Citrus Sinensis ID: 045431
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 433 | 2.2.26 [Sep-21-2011] | |||||||
| Q93ZN9 | 461 | LL-diaminopimelate aminot | yes | no | 0.997 | 0.937 | 0.824 | 0.0 | |
| Q10MQ2 | 464 | Probable LL-diaminopimela | yes | no | 0.967 | 0.903 | 0.811 | 0.0 | |
| Q9ZQI7 | 456 | Aminotransferase ALD1 OS= | no | no | 0.953 | 0.905 | 0.619 | 1e-159 | |
| Q6VMN7 | 440 | Aminotransferase ALD1 hom | no | no | 0.951 | 0.936 | 0.660 | 1e-152 | |
| Q6MDE0 | 411 | LL-diaminopimelate aminot | yes | no | 0.921 | 0.970 | 0.558 | 1e-134 | |
| B7KL61 | 411 | LL-diaminopimelate aminot | yes | no | 0.905 | 0.953 | 0.490 | 2e-98 | |
| B8HJY4 | 411 | LL-diaminopimelate aminot | yes | no | 0.909 | 0.958 | 0.492 | 3e-98 | |
| B1XKF6 | 410 | LL-diaminopimelate aminot | yes | no | 0.926 | 0.978 | 0.486 | 1e-97 | |
| B1WSG7 | 411 | LL-diaminopimelate aminot | yes | no | 0.919 | 0.968 | 0.482 | 1e-97 | |
| Q04UL5 | 408 | LL-diaminopimelate aminot | yes | no | 0.914 | 0.970 | 0.472 | 4e-97 |
| >sp|Q93ZN9|DAPAT_ARATH LL-diaminopimelate aminotransferase, chloroplastic OS=Arabidopsis thaliana GN=DAP PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/433 (82%), Positives = 398/433 (91%), Gaps = 1/433 (0%)
Query: 1 RQNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLGKLQAGYLFPEIARRKAAHMLKY 60
R AKR++ CKCVA PQE KI YKTKVSRN N+ KLQAGYLFPEIARR++AH+LKY
Sbjct: 30 RNACLPMAKRVNTCKCVATPQE-KIEYKTKVSRNSNMSKLQAGYLFPEIARRRSAHLLKY 88
Query: 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK 120
PDA+VISLGIGDTTEPIPEVITSA+AK+++ LST EGYSGYGAEQG KPLRAAIA TFY
Sbjct: 89 PDAQVISLGIGDTTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYG 148
Query: 121 DLGIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAE 180
LGI + D+FVSDGAKCDISRLQ++FGSNVT+AVQDPSYPAYVDSSVIMGQTG+F D +
Sbjct: 149 GLGIGDDDVFVSDGAKCDISRLQVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQ 208
Query: 181 KYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSI 240
KYG IEYMRCT ENGFFPDLSTV RTDIIFFCSPNNPTGAAATREQLT+LV+FAK NGSI
Sbjct: 209 KYGNIEYMRCTPENGFFPDLSTVGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSI 268
Query: 241 IVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDG 300
IVYDSAYA+Y+SDDNPRSIFEIPGA+EVA+ET+SFSKYAGFTGVRLGWTVIPK+LL+SDG
Sbjct: 269 IVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSKYAGFTGVRLGWTVIPKKLLYSDG 328
Query: 301 FPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLG 360
FPVAKDFNRI+CTCFNGASNISQAG LACL+PEG +A+H+VIGFYKENT+II++TF SLG
Sbjct: 329 FPVAKDFNRIICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSLG 388
Query: 361 FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGN 420
+ VYGGKNAPYVWV FP +SSWDVF+EILEKTHVVTTPGSGFGPGGEGF+RVSAFGHR N
Sbjct: 389 YDVYGGKNAPYVWVHFPNQSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHREN 448
Query: 421 VLEACKRFKHLYK 433
+LEAC+RFK LYK
Sbjct: 449 ILEACRRFKQLYK 461
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Required for lysine biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate, a reaction that requires three enzymes in E.coli. Not active with meso-diaminopimelate, lysine or ornithine as substrates. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 8EC: 3 |
| >sp|Q10MQ2|DAPAT_ORYSJ Probable LL-diaminopimelate aminotransferase, chloroplastic OS=Oryza sativa subsp. japonica GN=AGD2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/419 (81%), Positives = 388/419 (92%)
Query: 15 KCVAAPQEEKIAYKTKVSRNGNLGKLQAGYLFPEIARRKAAHMLKYPDAEVISLGIGDTT 74
+CV++P + ++KTKV RN N+ KLQAGYLFPEIARR+AAH+LK+PDA++ISLGIGDTT
Sbjct: 46 RCVSSPPATETSFKTKVPRNANMAKLQAGYLFPEIARRRAAHLLKFPDAKIISLGIGDTT 105
Query: 75 EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDG 134
EPIP+VIT+A+AKR++ALST +GYSGYGAEQGEK LRAAIA+T+Y DLGIEE DIFVSDG
Sbjct: 106 EPIPDVITNAMAKRAHALSTVDGYSGYGAEQGEKKLRAAIAATYYADLGIEETDIFVSDG 165
Query: 135 AKCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAEN 194
AKCDISRLQ++FGSNV +AVQDPSYPAYVDSSVIMGQTG +Q+D +KYG IEYM+C+ EN
Sbjct: 166 AKCDISRLQVLFGSNVKIAVQDPSYPAYVDSSVIMGQTGLYQEDVQKYGNIEYMKCSPEN 225
Query: 195 GFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDD 254
GFFPDLS+V RTDIIFFCSPNNPTGAAA+R+QLT+LV+FAKDNGSIIVYDSAYA+YISDD
Sbjct: 226 GFFPDLSSVPRTDIIFFCSPNNPTGAAASRDQLTKLVKFAKDNGSIIVYDSAYAMYISDD 285
Query: 255 NPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTC 314
+P+SIFEIPGAKEVAIET+SFSKYAGFTGVRLGWTV+PKELLFSDG PVAKDFNRIVCTC
Sbjct: 286 SPKSIFEIPGAKEVAIETASFSKYAGFTGVRLGWTVVPKELLFSDGHPVAKDFNRIVCTC 345
Query: 315 FNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWV 374
FNGASNISQAGGL CLSPEG KA+ +V+GFYKENT IIV+TF SLGF VYG KNAPYVWV
Sbjct: 346 FNGASNISQAGGLGCLSPEGLKAMSDVVGFYKENTKIIVDTFTSLGFNVYGAKNAPYVWV 405
Query: 375 QFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433
FPGR+SWDVF+EILEK HVVTTPGSGFGPGGEGF+RVSAFGHR N++EA +R K LYK
Sbjct: 406 HFPGRNSWDVFAEILEKAHVVTTPGSGFGPGGEGFVRVSAFGHRENIIEAARRLKQLYK 464
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Required for lysine biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate, a reaction that requires three enzymes in E.coli. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 8 EC: 3 |
| >sp|Q9ZQI7|ALD1_ARATH Aminotransferase ALD1 OS=Arabidopsis thaliana GN=ALD1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 561 bits (1446), Expect = e-159, Method: Compositional matrix adjust.
Identities = 256/413 (61%), Positives = 324/413 (78%)
Query: 21 QEEKIAYKTKVSRNGNLGKLQAGYLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEV 80
+ +K+ TK+ RN NL KL+ YLFPEI RR+ H+ K+P+ ++ISLG GDTTEPIPE
Sbjct: 28 EMKKLGGSTKLVRNVNLEKLKNNYLFPEINRRELEHIEKHPNVQLISLGTGDTTEPIPEQ 87
Query: 81 ITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDIS 140
ITS ++ ++ LST EGY GYG EQG K LR AIA TFY+DL ++ ++FVSDGA+ DIS
Sbjct: 88 ITSHMSNFAHGLSTVEGYRGYGLEQGNKTLRKAIAETFYRDLHVKSNEVFVSDGAQSDIS 147
Query: 141 RLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDL 200
RLQ++ GSNVT+AVQDP++PAY+DSSVI+GQTG F + +KY + YM C N FFPDL
Sbjct: 148 RLQLLLGSNVTIAVQDPTFPAYIDSSVIIGQTGHFHEKTKKYQNVVYMPCGPNNSFFPDL 207
Query: 201 STVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIF 260
+ RTD+IFFCSPNNPTG A+R+QL +LV FAK NGSII++DSAYA +I D +PRSI+
Sbjct: 208 AMTPRTDVIFFCSPNNPTGYVASRKQLHQLVDFAKTNGSIIIFDSAYAAFIEDGSPRSIY 267
Query: 261 EIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASN 320
EIPGA+EVAIE SSFSK+AGFTGVRLGW++IP ELL+S+GFP+ DF+RIV T FNGASN
Sbjct: 268 EIPGAREVAIEVSSFSKFAGFTGVRLGWSIIPDELLYSNGFPIINDFHRIVTTSFNGASN 327
Query: 321 ISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRS 380
I+QAGGLACLS G K + V +YKEN I+++T SLG KVYGG NAPY+WV F G
Sbjct: 328 IAQAGGLACLSSGGLKEIRSVNNYYKENRKILMDTLVSLGLKVYGGVNAPYLWVHFKGSK 387
Query: 381 SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433
SWDVF+EILE TH++T PGSGFGPGGE ++R+S FG R +++EA KR ++ +
Sbjct: 388 SWDVFNEILENTHIITVPGSGFGPGGEEYLRISGFGRRDHIVEASKRLQNFFN 440
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Aminotransferase involved in local and systemic acquired resistance (SAR) to the bacterial pathogen P.syringae. Required for salicylic acid (SA) and camalexin accumulation upon pathogen infection. Possesses aminotransferase activity in vitro and may generate amino-acid-derived defense signals in vivo. May be involved in ethylene-induced senescence signaling. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|Q6VMN7|ALD1_ORYSJ Aminotransferase ALD1 homolog OS=Oryza sativa subsp. japonica GN=ALD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 536 bits (1382), Expect = e-152, Method: Compositional matrix adjust.
Identities = 276/418 (66%), Positives = 331/418 (79%), Gaps = 6/418 (1%)
Query: 17 VAAPQEEKIAYKTKVSRNGNLGKLQAGYLFPEIARRKAAHMLKYPDAEVISLGIGDTTEP 76
VA P + +T V RN N+ KLQ GYLFPEI+ ++ H+ KYPDA+VISLGIGDTTEP
Sbjct: 20 VAPPVKIGGPRRTSVLRNPNMEKLQKGYLFPEISIKREEHLKKYPDAKVISLGIGDTTEP 79
Query: 77 IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAK 136
IP ++TSA+A+ + ALST EGY GYG EQG K LR IA Y D+GI+E ++F+SDGA+
Sbjct: 80 IPSIVTSAMAEYALALSTPEGYQGYGPEQGHKNLRKEIADKVYPDMGIKESEVFISDGAQ 139
Query: 137 CDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGF 196
CDI+RLQ +FG NVT+AVQDP++P YVD+ VIMGQTG+ D +Y IEYMRC EN F
Sbjct: 140 CDIARLQTLFGPNVTIAVQDPTFPGYVDNGVIMGQTGK-ADDGGRYAGIEYMRCAPENAF 198
Query: 197 FPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYD----SAYALYIS 252
FPDLS V RTD+IFFCSPNNPTG AA+REQL +LV+ A+ NGSIIV+D S + S
Sbjct: 199 FPDLSRVRRTDVIFFCSPNNPTGHAASREQLRQLVELARRNGSIIVFDSAYSSYISSSSS 258
Query: 253 DDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVC 312
PRSI+EIPGA+EVAIE SSFSK+AGFTGVRLGW V+P ELL+SDG PVA+DF+R+VC
Sbjct: 259 SSTPRSIYEIPGAREVAIEVSSFSKFAGFTGVRLGWAVVPDELLYSDGVPVARDFDRVVC 318
Query: 313 TCFNGASNISQAGGLACLSP-EGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPY 371
TCFNGAS I+QAGG+ACLS EG AV V+G Y+EN ++VETF SLG +V+GG +APY
Sbjct: 319 TCFNGASGIAQAGGVACLSTEEGRGAVARVVGVYRENARVLVETFRSLGKEVHGGGDAPY 378
Query: 372 VWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFK 429
VWV+FPGR SWDVF+EILEKTHV+T PGSGFGPGGEGFIRVSAF R VLEAC+R K
Sbjct: 379 VWVRFPGRRSWDVFAEILEKTHVITVPGSGFGPGGEGFIRVSAFNSRDKVLEACQRLK 436
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Probable aminotransferase that may generate amino-acid-derived defense signals and be involved in resistance to pathogens. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|Q6MDE0|DAPAT_PARUW LL-diaminopimelate aminotransferase OS=Protochlamydia amoebophila (strain UWE25) GN=dapL PE=1 SV=2 | Back alignment and function description |
|---|
Score = 477 bits (1227), Expect = e-134, Method: Compositional matrix adjust.
Identities = 224/401 (55%), Positives = 297/401 (74%), Gaps = 2/401 (0%)
Query: 31 VSRNGNLGKLQAGYLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSY 90
V RN +L KLQ+GYLFPEI RRK + K+P A++I+LGIGDTT+PIP I+ A+ +
Sbjct: 2 VKRNVHLTKLQSGYLFPEINRRKNEFLKKHPSAQLINLGIGDTTQPIPLYISEAMQNFAK 61
Query: 91 ALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQIVFGSNV 150
L++++ Y GYG EQG LR AIA +Y+ I+ ++FVSDG+KCD+ RLQI+FGS+
Sbjct: 62 QLASEKTYRGYGTEQGSILLREAIAEQYYQG-KIDPQEVFVSDGSKCDVGRLQILFGSDA 120
Query: 151 TMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIF 210
T+AVQ+P+YPAYVD+ VI GQ FQ ++Y +I YM C EN FFPDL+ + +TD+I+
Sbjct: 121 TIAVQNPTYPAYVDTGVINGQASFFQTSTKQYQRITYMSCLPENNFFPDLANLPKTDLIY 180
Query: 211 FCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYI-SDDNPRSIFEIPGAKEVA 269
FCSPNNPTG+AAT EQL LVQFAK SII++D+AYA ++ S PRSI+EI GAKEVA
Sbjct: 181 FCSPNNPTGSAATNEQLRELVQFAKKRQSIIIFDAAYASFVRSSHIPRSIYEIEGAKEVA 240
Query: 270 IETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLAC 329
IE SFSK GFTGVRLGW+V+PK+L F DG V +D+ RIVCT FNGASNI+QAGGLA
Sbjct: 241 IEVGSFSKMIGFTGVRLGWSVVPKQLRFEDGHSVQQDWERIVCTFFNGASNIAQAGGLAA 300
Query: 330 LSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSWDVFSEIL 389
L EG +A+ E+ +Y +N++I+ + F G+KVYGG+N PY+WV FP +SW+ F +L
Sbjct: 301 LQKEGLQAIDELSSYYMKNSNILKKAFEECGYKVYGGENVPYLWVHFPQLTSWEAFEILL 360
Query: 390 EKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKH 430
+++ +V+ PGSGFG GEGF+R SAFG + ++ A R KH
Sbjct: 361 KQSQLVSVPGSGFGSAGEGFLRFSAFGKQSDITVALPRIKH 401
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Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate, a reaction that requires three enzymes in E.coli. Is also able to use meso-diaminopimelate, lysine or ornithine as substrates. Protochlamydia amoebophila (strain UWE25) (taxid: 264201) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 8 EC: 3 |
| >sp|B7KL61|DAPAT_CYAP7 LL-diaminopimelate aminotransferase OS=Cyanothece sp. (strain PCC 7424) GN=dapL PE=3 SV=1 | Back alignment and function description |
|---|
Score = 359 bits (921), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 197/402 (49%), Positives = 254/402 (63%), Gaps = 10/402 (2%)
Query: 34 NGNLGKLQAGYLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALS 93
N N KL+AGYLFPEIARR A +P+A++I LGIGD TEP+P+ A+ K +
Sbjct: 5 NDNYLKLKAGYLFPEIARRVNAFAEAHPEAKIIKLGIGDVTEPLPQACRQAMIKAVEEMG 64
Query: 94 TQEGYSGYGAEQGEKPLRAAIASTFYKDLG--IEEGDIFVSDGAKCDISRLQIVFGSNVT 151
+ + GYG EQG LR IA ++ G I+ +IF+SDG+KCD + +FG N T
Sbjct: 65 DRATFKGYGPEQGYNWLREKIAQNDFQARGCDIDASEIFISDGSKCDTGNILDIFGKNNT 124
Query: 152 MAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFF 211
+AV DP YP YVD++V+ G TG+ E G + Y+ TA N F P+L + + D+I+
Sbjct: 125 IAVTDPVYPVYVDTNVMAGHTGDANDKGEYLGLV-YLPMTANNNFTPELPS-QKVDLIYL 182
Query: 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAI 270
C PNNPTGA AT+E LT+ V +AK+NGSII +D+AY +I+D + P SI+EI GA++ AI
Sbjct: 183 CFPNNPTGATATKENLTKWVNYAKENGSIIFFDAAYEAFITDPSLPHSIYEIEGARDCAI 242
Query: 271 ETSSFSKYAGFTGVRLGWTVIPKEL--LFSDGFPVA--KDFNRIVCTCFNGASNISQAGG 326
E SFSK AGFTG R TV+PK L SDG V K +NR T FNG S I Q G
Sbjct: 243 EFRSFSKNAGFTGTRCALTVVPKTLKAKASDGSEVELWKLWNRRQSTKFNGVSYIVQRGA 302
Query: 327 LACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFP-GRSSWDVF 385
A S EG V ++ FY EN II + + G VYGG NAPYVWV+ P G SSWD F
Sbjct: 303 EAVYSEEGQAQVKALVNFYLENAKIICDKLSFAGLTVYGGVNAPYVWVKTPDGLSSWDFF 362
Query: 386 SEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKR 427
++L+ +VV TPGSGFG GEG+ R+SAF R NV EA +R
Sbjct: 363 DKLLQSANVVGTPGSGFGAAGEGYFRISAFNSRENVEEATRR 404
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Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate, a reaction that requires three enzymes in E.coli. Cyanothece sp. (strain PCC 7424) (taxid: 65393) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 8 EC: 3 |
| >sp|B8HJY4|DAPAT_CYAP4 LL-diaminopimelate aminotransferase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=dapL PE=3 SV=1 | Back alignment and function description |
|---|
Score = 358 bits (920), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 199/404 (49%), Positives = 252/404 (62%), Gaps = 10/404 (2%)
Query: 34 NGNLGKLQAGYLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALS 93
N + KL+AGYLFPEIARR A PDA++I LGIGD TEP+P +A+ K +
Sbjct: 5 NDHYLKLKAGYLFPEIARRVNAFAAAQPDAQIIRLGIGDVTEPLPAACRTAMIKAVEDMG 64
Query: 94 TQEGYSGYGAEQGEKPLRAAIASTFYKDLG--IEEGDIFVSDGAKCDISRLQIVFGSNVT 151
+ + GYG EQG + LR +IA ++ G I+ +IFVSDG+KCD + +FG N T
Sbjct: 65 DRSSFRGYGPEQGYEWLRQSIAEHDFQRRGCEIDASEIFVSDGSKCDTGNILDIFGDNNT 124
Query: 152 MAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFF 211
+AV DP YP YVD++V+ G TG + E Y + Y+ TAENGF L + D+I+
Sbjct: 125 IAVTDPVYPVYVDTNVMAGHTGAANEQGE-YAGLVYLPVTAENGFTASLPE-QKVDLIYL 182
Query: 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISD-DNPRSIFEIPGAKEVAI 270
C PNNPTGA A+R L + V +A+ NGSII +D+AY +I+D D P SI+EIPGA+ AI
Sbjct: 183 CFPNNPTGATASRAHLQQWVDYARANGSIIFFDAAYEAFITDPDLPHSIYEIPGARSCAI 242
Query: 271 ETSSFSKYAGFTGVRLGWTVIPKELL--FSDGFPVA--KDFNRIVCTCFNGASNISQAGG 326
E SFSK AGFTG R TV+PK L +DG V K +NR T FNG S I Q G
Sbjct: 243 EFRSFSKNAGFTGTRCALTVVPKTLTAKAADGSEVEIWKLWNRRQSTKFNGVSYIVQRGA 302
Query: 327 LACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFP-GRSSWDVF 385
A SPEG V ++ FY EN II E ++ G VYGG NAPYVWV+ P G SSW+ F
Sbjct: 303 EAVYSPEGQAEVKGLVSFYLENARIIREQLSANGLAVYGGVNAPYVWVKTPSGFSSWEFF 362
Query: 386 SEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFK 429
++L HVV TPGSGFG GEG+ RVSAF R NV A +R +
Sbjct: 363 DKLLHTCHVVVTPGSGFGAAGEGYFRVSAFNSRANVEMAMQRIR 406
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Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate, a reaction that requires three enzymes in E.coli. Cyanothece sp. (strain PCC 7425 / ATCC 29141) (taxid: 395961) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 8 EC: 3 |
| >sp|B1XKF6|DAPAT_SYNP2 LL-diaminopimelate aminotransferase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=dapL PE=3 SV=1 | Back alignment and function description |
|---|
Score = 357 bits (916), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 200/411 (48%), Positives = 258/411 (62%), Gaps = 10/411 (2%)
Query: 31 VSRNGNLGKLQAGYLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSY 90
V N N KL+AGYLFPEIARR + + P+A +I LGIGD TEP+P A+AK
Sbjct: 2 VRINENYLKLKAGYLFPEIARRVNGFLAENPNAPIIKLGIGDVTEPLPAACREAMAKAID 61
Query: 91 ALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLG--IEEGDIFVSDGAKCDISRLQIVFGS 148
+ + + GYG EQG LR IA+ ++ G I+ +IFVSDGAKCD + +FG
Sbjct: 62 DMGDRANFKGYGPEQGYAWLREKIAAHDFQARGCDIDASEIFVSDGAKCDTGNILDIFGK 121
Query: 149 NVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDI 208
+ T+AV DP YP YVD++V+ G TGE ++ KYG + Y+ TA+N F + T + D+
Sbjct: 122 DNTIAVTDPVYPVYVDTNVMAGHTGE-ADESGKYGGLTYIPITADNDFVAQIPT-EKVDL 179
Query: 209 IFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKE 267
I+ C PNNPTGA AT+EQL V +AK NGSII +D+AY +I+D++ P SI+E+ GAK+
Sbjct: 180 IYLCFPNNPTGATATKEQLQAWVDYAKTNGSIIFFDAAYEAFITDESLPHSIYELEGAKD 239
Query: 268 VAIETSSFSKYAGFTGVRLGWTVIPKELLF--SDGFPVA--KDFNRIVCTCFNGASNISQ 323
AIE SFSK AGFTG R +TV+PK L S+G V +NR T FNG S I Q
Sbjct: 240 CAIEFRSFSKNAGFTGTRCAFTVVPKNLTVTASNGQAVQLWSLWNRRQSTKFNGVSYIVQ 299
Query: 324 AGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFP-GRSSW 382
G A S G + +I FY EN II ++GF VYGG NAPYVWV+ P G SSW
Sbjct: 300 RGAEAVYSEAGQAQIKTLIDFYLENAAIIRRELQAVGFDVYGGVNAPYVWVKTPAGLSSW 359
Query: 383 DVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433
D F ++L +VV TPGSGFG GEG+ R+SAF R NVLEA KR ++
Sbjct: 360 DFFDKLLINCNVVGTPGSGFGAAGEGYFRISAFNSRENVLEAMKRITTAFQ 410
|
Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate, a reaction that requires three enzymes in E.coli. Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (taxid: 32049) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 8 EC: 3 |
| >sp|B1WSG7|DAPAT_CYAA5 LL-diaminopimelate aminotransferase OS=Cyanothece sp. (strain ATCC 51142) GN=dapL PE=3 SV=1 | Back alignment and function description |
|---|
Score = 357 bits (916), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 197/408 (48%), Positives = 256/408 (62%), Gaps = 10/408 (2%)
Query: 34 NGNLGKLQAGYLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALS 93
N N KL+AGYLFPEIARR + P+A++I LGIGD TEP+PE +A+ K +
Sbjct: 5 NDNYLKLKAGYLFPEIARRVNTFIEANPEAKIIKLGIGDVTEPLPEACRTAMIKAVEDMG 64
Query: 94 TQEGYSGYGAEQGEKPLRAAIASTFYKDLG--IEEGDIFVSDGAKCDISRLQIVFGSNVT 151
+ + GYG EQG LR IA+ ++ G I+ +IFVSDGAKCD + +FG N
Sbjct: 65 DRSSFKGYGPEQGYGWLREKIAAQDFQARGCDIDASEIFVSDGAKCDTGNILDIFGKNNK 124
Query: 152 MAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFF 211
+AV DP YP YVD++V+ G TGE + E Y + Y+ +A+N F D+ + + D+I+
Sbjct: 125 IAVTDPVYPVYVDTNVMAGHTGETNEKGE-YEGLVYLPISADNHFVADIPS-EKVDLIYL 182
Query: 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAI 270
C PNNPTGA AT+E L V +A N SII +D+AY +I+D++ P SI+EI GAK+ AI
Sbjct: 183 CFPNNPTGATATKEYLKAWVDYATANDSIIFFDAAYEAFITDESLPHSIYEIEGAKDCAI 242
Query: 271 ETSSFSKYAGFTGVRLGWTVIPKELL--FSDGFPVA--KDFNRIVCTCFNGASNISQAGG 326
E SFSK AGFTG R +TV+PK+L SDG V K +NR T FNG S I Q G
Sbjct: 243 EFRSFSKNAGFTGTRCAFTVVPKQLTAKASDGSQVELWKLWNRRQSTKFNGVSYIVQRGA 302
Query: 327 LACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGR-SSWDVF 385
A S G + ++ FY EN II E S GF+VYGG NAPY+W++ P SSWD F
Sbjct: 303 EAVYSEAGKAQIKGLVSFYLENAKIICEQLKSAGFEVYGGVNAPYIWLKTPHNLSSWDFF 362
Query: 386 SEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433
++L+ THVV TPGSGFG GEG+ R+SAF R NV EA KR +K
Sbjct: 363 DKLLQTTHVVGTPGSGFGAAGEGYFRISAFNSRENVEEAMKRITQAFK 410
|
Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate, a reaction that requires three enzymes in E.coli. Cyanothece sp. (strain ATCC 51142) (taxid: 43989) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 8 EC: 3 |
| >sp|Q04UL5|DAPAT_LEPBJ LL-diaminopimelate aminotransferase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=dapL PE=3 SV=1 | Back alignment and function description |
|---|
Score = 355 bits (911), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 192/406 (47%), Positives = 253/406 (62%), Gaps = 10/406 (2%)
Query: 34 NGNLGKLQAGYLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALS 93
N N KL+AGYLFPEI++R + K P A++I LGIGD T PI + A+ S +
Sbjct: 5 NENYLKLKAGYLFPEISKRVKTYSEKNPSAKIIRLGIGDVTLPIVPSVVDAMIAASKEMG 64
Query: 94 TQEGYSGYGAEQGEKPLRAAIASTFYKDLG--IEEGDIFVSDGAKCDISRLQIVFGSNVT 151
T G+ GYG EQG L +IA+ Y LG I+E +IFVSDG+KCD +Q +F ++
Sbjct: 65 TAGGFHGYGPEQGYSFLLKSIANNDYGSLGIKIDESEIFVSDGSKCDCGNIQEIFSTDAK 124
Query: 152 MAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFF 211
+AV DP YP YVD++V+ G+TGE D +Y + YM T ENGF P++ + DII+
Sbjct: 125 IAVSDPVYPVYVDTNVMAGRTGEIGADG-RYSNLIYMPATKENGFQPEIPK-EKADIIYL 182
Query: 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAI 270
C PNNPTG T+E L V++AK N SII+YDSAY +IS+ PRSI+E+ GAKEVAI
Sbjct: 183 CYPNNPTGTVTTKEALRAWVEYAKKNNSIILYDSAYEAFISEPGVPRSIYEVAGAKEVAI 242
Query: 271 ETSSFSKYAGFTGVRLGWTVIPKEL----LFSDGFPVAKDFNRIVCTCFNGASNISQAGG 326
E SFSK AGFTG+R + VIPKEL + + ++R T FNG S ++Q G
Sbjct: 243 EFRSFSKTAGFTGLRCAYIVIPKELKGRTRGGEEVSINSLWSRRHTTKFNGVSYVTQKGA 302
Query: 327 LACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGR-SSWDVF 385
AC SP+G K + I +Y N I E G++V+GG NAPY+W++ SSWD F
Sbjct: 303 EACYSPQGKKEIQASIAYYMSNAAKIREGLKKAGYEVFGGVNAPYIWLKTSDNLSSWDFF 362
Query: 386 SEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHL 431
+L+K VV TPGSGFGP GEG+ R+SAFG + +V EA R L
Sbjct: 363 DRLLDKAQVVGTPGSGFGPAGEGYFRLSAFGKKEDVEEAIARISFL 408
|
Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate, a reaction that requires three enzymes in E.coli. Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) (taxid: 355277) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 8 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 433 | ||||||
| 449459566 | 461 | PREDICTED: LL-diaminopimelate aminotrans | 0.981 | 0.921 | 0.854 | 0.0 | |
| 359475515 | 460 | PREDICTED: LL-diaminopimelate aminotrans | 0.995 | 0.936 | 0.844 | 0.0 | |
| 297736359 | 469 | unnamed protein product [Vitis vinifera] | 0.995 | 0.918 | 0.830 | 0.0 | |
| 225429094 | 459 | PREDICTED: LL-diaminopimelate aminotrans | 0.995 | 0.938 | 0.830 | 0.0 | |
| 357476071 | 459 | LL-diaminopimelate aminotransferase [Med | 1.0 | 0.943 | 0.856 | 0.0 | |
| 118483001 | 461 | unknown [Populus trichocarpa] | 0.995 | 0.934 | 0.849 | 0.0 | |
| 356521265 | 458 | PREDICTED: LL-diaminopimelate aminotrans | 0.997 | 0.943 | 0.847 | 0.0 | |
| 356524774 | 458 | PREDICTED: LL-diaminopimelate aminotrans | 0.997 | 0.943 | 0.845 | 0.0 | |
| 255562088 | 460 | Transaminase mtnE, putative [Ricinus com | 0.983 | 0.926 | 0.859 | 0.0 | |
| 297736361 | 397 | unnamed protein product [Vitis vinifera] | 0.916 | 1.0 | 0.871 | 0.0 |
| >gi|449459566|ref|XP_004147517.1| PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic-like [Cucumis sativus] gi|449520054|ref|XP_004167049.1| PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/425 (85%), Positives = 394/425 (92%)
Query: 9 KRISVCKCVAAPQEEKIAYKTKVSRNGNLGKLQAGYLFPEIARRKAAHMLKYPDAEVISL 68
KR+ VC CVA Q+ K A+KT VSRN N+ KLQAGYLFPEIARR+ AH+LK+PDA+VISL
Sbjct: 37 KRVGVCMCVATSQDSKTAHKTAVSRNENMAKLQAGYLFPEIARRRNAHLLKFPDAKVISL 96
Query: 69 GIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGD 128
GIGDTTEPIP+VITSA+A+RS+ALST EGYSGYGAEQGEKPLR+ I TFY DL IEE D
Sbjct: 97 GIGDTTEPIPDVITSAMAQRSHALSTLEGYSGYGAEQGEKPLRSLIGKTFYSDLDIEEDD 156
Query: 129 IFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYM 188
IFVSDGAKCDI+RLQ+VFGSNV+MAVQDPSYPAYVDSSVI+GQTG++QKD EKYG IEYM
Sbjct: 157 IFVSDGAKCDITRLQLVFGSNVSMAVQDPSYPAYVDSSVILGQTGQYQKDVEKYGNIEYM 216
Query: 189 RCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYA 248
RCT ENGFFPDLS V RTDIIFFCSPNNPTG++A+REQLT+LVQFAK NGSIIVYDSAYA
Sbjct: 217 RCTPENGFFPDLSKVPRTDIIFFCSPNNPTGSSASREQLTQLVQFAKKNGSIIVYDSAYA 276
Query: 249 LYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFN 308
+YISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTV+PKELLFSDGFPVAKDFN
Sbjct: 277 MYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVVPKELLFSDGFPVAKDFN 336
Query: 309 RIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKN 368
RIVCTCFNGASNISQAGGLACLSPEG +A+H VIGFYKENT II++TFNSLGF VYGGKN
Sbjct: 337 RIVCTCFNGASNISQAGGLACLSPEGLEAMHGVIGFYKENTSIIMDTFNSLGFNVYGGKN 396
Query: 369 APYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRF 428
APYVWV FPGRSSWDVF+EILEKTHVVTTPGSGFGP GEGFIRVSAFGHR NVLEAC+RF
Sbjct: 397 APYVWVHFPGRSSWDVFAEILEKTHVVTTPGSGFGPAGEGFIRVSAFGHRENVLEACRRF 456
Query: 429 KHLYK 433
K LYK
Sbjct: 457 KQLYK 461
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359475515|ref|XP_002269153.2| PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 770 bits (1987), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/431 (84%), Positives = 395/431 (91%)
Query: 3 NAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLGKLQAGYLFPEIARRKAAHMLKYPD 62
NA + K +CKCVA P E A+ TKVSRN N+ KLQAGYLFPEIARR++AHMLKYPD
Sbjct: 30 NARLPTKDSWICKCVATPPTETTAHMTKVSRNANMAKLQAGYLFPEIARRRSAHMLKYPD 89
Query: 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDL 122
A+VISLGIGDTTEPIPEVITS +AK++ ALST EGYSGYGAEQGE LRAAIAST+Y DL
Sbjct: 90 AQVISLGIGDTTEPIPEVITSGMAKKANALSTLEGYSGYGAEQGENRLRAAIASTYYGDL 149
Query: 123 GIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKY 182
IEE DIFVSDGAK DISRLQ++FGSNVTMAVQDPSYPAYVDSSVI+GQTG+FQKD EKY
Sbjct: 150 SIEESDIFVSDGAKSDISRLQVMFGSNVTMAVQDPSYPAYVDSSVILGQTGQFQKDVEKY 209
Query: 183 GKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIV 242
G IEYM+C ENGFFPDLSTV+RTDIIFFCSPNNPTG AATREQLTRLVQFAKDNGSI+V
Sbjct: 210 GNIEYMKCNPENGFFPDLSTVSRTDIIFFCSPNNPTGNAATREQLTRLVQFAKDNGSILV 269
Query: 243 YDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFP 302
YDSAYA+YISDD+PRSIFEIPGAKEVAIE SSFSKYAGFTGVRLGWTV+PKELL+SDGFP
Sbjct: 270 YDSAYAMYISDDSPRSIFEIPGAKEVAIEVSSFSKYAGFTGVRLGWTVVPKELLYSDGFP 329
Query: 303 VAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFK 362
VAKDFNRIVCT FNGASNISQAGGLACLSPEG +A+H+V+GFY+ENT+II+ETF SLGF
Sbjct: 330 VAKDFNRIVCTTFNGASNISQAGGLACLSPEGLEAMHKVVGFYQENTNIIMETFTSLGFS 389
Query: 363 VYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVL 422
VYGGKNAPYVWV FPG+SSWDVFSEILEKTHVVTTPGSGFGP G+GFIRVSAFGHRGNVL
Sbjct: 390 VYGGKNAPYVWVHFPGQSSWDVFSEILEKTHVVTTPGSGFGPAGDGFIRVSAFGHRGNVL 449
Query: 423 EACKRFKHLYK 433
EACKRFK LYK
Sbjct: 450 EACKRFKQLYK 460
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297736359|emb|CBI25082.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 757 bits (1954), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/431 (83%), Positives = 389/431 (90%)
Query: 3 NAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLGKLQAGYLFPEIARRKAAHMLKYPD 62
NA + K +CKCVA P E A+ TKVSRN N+ KLQAGYLFPEIARR++AHMLKYPD
Sbjct: 39 NACLPTKDSWICKCVATPSTETTAHTTKVSRNANMAKLQAGYLFPEIARRRSAHMLKYPD 98
Query: 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDL 122
A+VISLGIGDTTEPIPEVITS +AK+++ALST EGYSGYGAEQGEK LRAAIASTFY DL
Sbjct: 99 AQVISLGIGDTTEPIPEVITSGMAKKAHALSTLEGYSGYGAEQGEKQLRAAIASTFYGDL 158
Query: 123 GIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKY 182
IEE DIFVSDGAK DISRLQ++FGSNVTMAVQDPSYPAYVD SVI+GQTG+FQKD EKY
Sbjct: 159 SIEESDIFVSDGAKSDISRLQVMFGSNVTMAVQDPSYPAYVDLSVILGQTGQFQKDVEKY 218
Query: 183 GKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIV 242
G IEYM+C ENGFFPDLSTV+RTDIIFFCSP NPTG AATREQLTRLVQFAKDNGSI+V
Sbjct: 219 GNIEYMKCNPENGFFPDLSTVSRTDIIFFCSPYNPTGNAATREQLTRLVQFAKDNGSILV 278
Query: 243 YDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFP 302
YDS YA+YISDD+PRSIFEIPGAKEVAIE SSFSKYAGFTGVRLGWTV+PKELL+SDGFP
Sbjct: 279 YDSGYAMYISDDSPRSIFEIPGAKEVAIEVSSFSKYAGFTGVRLGWTVVPKELLYSDGFP 338
Query: 303 VAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFK 362
VAKDFNRI CT FN ASNISQA GLACLSPEG +A+H+++GFYKENT+II+ETF SLGF
Sbjct: 339 VAKDFNRIECTTFNAASNISQASGLACLSPEGLEAMHKLVGFYKENTNIIMETFTSLGFS 398
Query: 363 VYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVL 422
VYGGKNAPYVWV FPG+SSWDVFSEILEKTHVVTTPGSGFGP G+GFIRV AF HRGNVL
Sbjct: 399 VYGGKNAPYVWVHFPGQSSWDVFSEILEKTHVVTTPGSGFGPAGDGFIRVCAFSHRGNVL 458
Query: 423 EACKRFKHLYK 433
EACKRFK LYK
Sbjct: 459 EACKRFKRLYK 469
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225429094|ref|XP_002272305.1| PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 756 bits (1951), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/431 (83%), Positives = 389/431 (90%)
Query: 3 NAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLGKLQAGYLFPEIARRKAAHMLKYPD 62
NA + K +CKCVA P E A+ TKVSRN N+ KLQAGYLFPEIARR++AHMLKYPD
Sbjct: 29 NACLPTKDSWICKCVATPSTETTAHTTKVSRNANMAKLQAGYLFPEIARRRSAHMLKYPD 88
Query: 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDL 122
A+VISLGIGDTTEPIPEVITS +AK+++ALST EGYSGYGAEQGEK LRAAIASTFY DL
Sbjct: 89 AQVISLGIGDTTEPIPEVITSGMAKKAHALSTLEGYSGYGAEQGEKQLRAAIASTFYGDL 148
Query: 123 GIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKY 182
IEE DIFVSDGAK DISRLQ++FGSNVTMAVQDPSYPAYVD SVI+GQTG+FQKD EKY
Sbjct: 149 SIEESDIFVSDGAKSDISRLQVMFGSNVTMAVQDPSYPAYVDLSVILGQTGQFQKDVEKY 208
Query: 183 GKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIV 242
G IEYM+C ENGFFPDLSTV+RTDIIFFCSP NPTG AATREQLTRLVQFAKDNGSI+V
Sbjct: 209 GNIEYMKCNPENGFFPDLSTVSRTDIIFFCSPYNPTGNAATREQLTRLVQFAKDNGSILV 268
Query: 243 YDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFP 302
YDS YA+YISDD+PRSIFEIPGAKEVAIE SSFSKYAGFTGVRLGWTV+PKELL+SDGFP
Sbjct: 269 YDSGYAMYISDDSPRSIFEIPGAKEVAIEVSSFSKYAGFTGVRLGWTVVPKELLYSDGFP 328
Query: 303 VAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFK 362
VAKDFNRI CT FN ASNISQA GLACLSPEG +A+H+++GFYKENT+II+ETF SLGF
Sbjct: 329 VAKDFNRIECTTFNAASNISQASGLACLSPEGLEAMHKLVGFYKENTNIIMETFTSLGFS 388
Query: 363 VYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVL 422
VYGGKNAPYVWV FPG+SSWDVFSEILEKTHVVTTPGSGFGP G+GFIRV AF HRGNVL
Sbjct: 389 VYGGKNAPYVWVHFPGQSSWDVFSEILEKTHVVTTPGSGFGPAGDGFIRVCAFSHRGNVL 448
Query: 423 EACKRFKHLYK 433
EACKRFK LYK
Sbjct: 449 EACKRFKRLYK 459
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357476071|ref|XP_003608321.1| LL-diaminopimelate aminotransferase [Medicago truncatula] gi|355509376|gb|AES90518.1| LL-diaminopimelate aminotransferase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/433 (85%), Positives = 403/433 (93%)
Query: 1 RQNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLGKLQAGYLFPEIARRKAAHMLKY 60
R + K +S+CKCVA PQE + AYKT+VSRN NLGKLQAGYLFPEIARR++AH+LKY
Sbjct: 27 RSQVSLPVKSVSICKCVATPQEAETAYKTRVSRNENLGKLQAGYLFPEIARRRSAHLLKY 86
Query: 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK 120
PDA++ISLGIGDTTEPIPEVITSALAK+S+ALST EGYSGYGAEQGEKPLR+AIASTFY
Sbjct: 87 PDAKIISLGIGDTTEPIPEVITSALAKKSHALSTLEGYSGYGAEQGEKPLRSAIASTFYP 146
Query: 121 DLGIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAE 180
DLGIE+ DIFVSDGAKCDISRLQIVFGSNV MAVQDPSYPAYVDSSVIMGQTG +QKD +
Sbjct: 147 DLGIEDDDIFVSDGAKCDISRLQIVFGSNVKMAVQDPSYPAYVDSSVIMGQTGLYQKDVQ 206
Query: 181 KYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSI 240
K+ IEYMRC ENGFFPDLS+++R DIIFFCSPNNPTGAAATREQL +LVQFAKDNGSI
Sbjct: 207 KFANIEYMRCNPENGFFPDLSSLSRPDIIFFCSPNNPTGAAATREQLVQLVQFAKDNGSI 266
Query: 241 IVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDG 300
IVYDSAYA+YIS DNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPK+LLFSDG
Sbjct: 267 IVYDSAYAMYISGDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKQLLFSDG 326
Query: 301 FPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLG 360
FPVAKDFNRIVCTCFNGASNISQAGGLACLSPEG KA+ VIGFYKENT+IIV+TF+SLG
Sbjct: 327 FPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGLKAMRGVIGFYKENTNIIVDTFDSLG 386
Query: 361 FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGN 420
FKVYGGK+APYVWV FPG++SWDVFSEILEKTHVVTTPGSGFGPGGEGF+RVSAFGHR N
Sbjct: 387 FKVYGGKSAPYVWVHFPGQNSWDVFSEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHREN 446
Query: 421 VLEACKRFKHLYK 433
VLEAC+RFK LYK
Sbjct: 447 VLEACRRFKQLYK 459
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118483001|gb|ABK93412.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/431 (84%), Positives = 398/431 (92%)
Query: 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLGKLQAGYLFPEIARRKAAHMLKYP 61
QN + +K S+C C AAPQE+K YKT+VSRN N+ KLQAGYLFPE+ARR+ AHMLKYP
Sbjct: 30 QNVSIASKTPSICTCAAAPQEQKTVYKTQVSRNANIAKLQAGYLFPEVARRRNAHMLKYP 89
Query: 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKD 121
DA+VISLGIGDTTEPIPEVITSA+AKR+ ALST EGY GYG EQGEKPLR AIASTFY
Sbjct: 90 DAKVISLGIGDTTEPIPEVITSAIAKRAEALSTLEGYGGYGPEQGEKPLRTAIASTFYSG 149
Query: 122 LGIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEK 181
LGIEE DIFVSDGAKCDISRLQ+VFG+NVTMAVQDPSYPAYVDSSVIMGQTG+FQKD EK
Sbjct: 150 LGIEEDDIFVSDGAKCDISRLQMVFGANVTMAVQDPSYPAYVDSSVIMGQTGQFQKDIEK 209
Query: 182 YGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSII 241
YGKIEYMRCT ENGFFPDLS V+RTDIIFFCSPNNPTG+AATREQLT+LVQFAKDNGSII
Sbjct: 210 YGKIEYMRCTPENGFFPDLSKVSRTDIIFFCSPNNPTGSAATREQLTQLVQFAKDNGSII 269
Query: 242 VYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGF 301
VYDSAYA+Y+SDDNPRSIFEIPGAKEVA+ETSSFSKYAGFTGVRLGWTV+PK+LL+SDGF
Sbjct: 270 VYDSAYAMYMSDDNPRSIFEIPGAKEVALETSSFSKYAGFTGVRLGWTVVPKQLLYSDGF 329
Query: 302 PVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGF 361
PV KDFNR+VCT FNGASNI QAGG ACLSPEG KA+ EVIGFYKEN++II++TFNSLGF
Sbjct: 330 PVVKDFNRVVCTSFNGASNICQAGGRACLSPEGLKAMSEVIGFYKENSNIIMDTFNSLGF 389
Query: 362 KVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNV 421
VYGGKNAPYVWV FPG+SSWDVFSEILEKTHVVTTPGSGFGPGGEGF+RVSAFGHR NV
Sbjct: 390 NVYGGKNAPYVWVHFPGQSSWDVFSEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENV 449
Query: 422 LEACKRFKHLY 432
LEAC+RFK LY
Sbjct: 450 LEACRRFKQLY 460
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356521265|ref|XP_003529277.1| PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/433 (84%), Positives = 401/433 (92%), Gaps = 1/433 (0%)
Query: 1 RQNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLGKLQAGYLFPEIARRKAAHMLKY 60
R + K +S+CKCVA P+ E AYKT V+RN N+GKLQAGYLFPEIARR++AH+LKY
Sbjct: 27 RGQVSLPVKSVSICKCVATPEAET-AYKTGVTRNPNMGKLQAGYLFPEIARRRSAHLLKY 85
Query: 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK 120
PDA+VISLGIGDTTEPIPEVIT A++KRS+ALST EGYSGYGAEQGEKPLR A+ASTFY
Sbjct: 86 PDAKVISLGIGDTTEPIPEVITDAMSKRSHALSTIEGYSGYGAEQGEKPLRRALASTFYS 145
Query: 121 DLGIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAE 180
DLGIEE DIFVSDGAKCDISRLQIVFGSNV MAVQDPSYPAYVDSSVIMGQTG +QKD E
Sbjct: 146 DLGIEEDDIFVSDGAKCDISRLQIVFGSNVKMAVQDPSYPAYVDSSVIMGQTGLYQKDVE 205
Query: 181 KYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSI 240
K+ IEYMRC ENGFFPDLS+++R DIIFFCSPNNPTGAAATREQLT+LVQFAKDNGSI
Sbjct: 206 KFANIEYMRCNPENGFFPDLSSISRPDIIFFCSPNNPTGAAATREQLTQLVQFAKDNGSI 265
Query: 241 IVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDG 300
+++DSAYA+YIS DNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTV+PK+LLFSDG
Sbjct: 266 VIHDSAYAMYISGDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVVPKQLLFSDG 325
Query: 301 FPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLG 360
FPVAKDFNRIVCTCFNGASNISQAGGLACLSP+G KA+ +VIGFYKENTDII+ETF+SLG
Sbjct: 326 FPVAKDFNRIVCTCFNGASNISQAGGLACLSPDGLKAMRDVIGFYKENTDIIMETFDSLG 385
Query: 361 FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGN 420
FKVYGGK+APYVWV FPGRSSWDVF+EILEKTHVVTTPGSGFGPGGEGFIRVSAFGHR N
Sbjct: 386 FKVYGGKDAPYVWVHFPGRSSWDVFAEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHREN 445
Query: 421 VLEACKRFKHLYK 433
VLEAC+RFK LYK
Sbjct: 446 VLEACRRFKQLYK 458
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356524774|ref|XP_003531003.1| PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 741 bits (1912), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/433 (84%), Positives = 400/433 (92%), Gaps = 1/433 (0%)
Query: 1 RQNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLGKLQAGYLFPEIARRKAAHMLKY 60
R + K +S+CKCVA P+ E AYKT V+RN N+GKLQAGYLFPEIARR++AH+LKY
Sbjct: 27 RGQVSLPVKSVSICKCVATPEAET-AYKTGVNRNPNMGKLQAGYLFPEIARRRSAHLLKY 85
Query: 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK 120
PDA+VISLGIGDTTEPIPEVIT A++KRS+ALST EGYSGYGAEQGEKPLR A+ASTFY
Sbjct: 86 PDAKVISLGIGDTTEPIPEVITDAMSKRSHALSTIEGYSGYGAEQGEKPLRRALASTFYS 145
Query: 121 DLGIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAE 180
DLGIEE DIFVSDGAKCDISRLQIVFGSNV MAVQDPSYPAYVDSSVIMGQTG FQK+ E
Sbjct: 146 DLGIEEDDIFVSDGAKCDISRLQIVFGSNVKMAVQDPSYPAYVDSSVIMGQTGLFQKNVE 205
Query: 181 KYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSI 240
K+ IEYMRC ENGFFPDLS+++R DIIFFCSPNNPTGA ATREQLT+LVQFAKDNGSI
Sbjct: 206 KFANIEYMRCNPENGFFPDLSSISRPDIIFFCSPNNPTGAVATREQLTQLVQFAKDNGSI 265
Query: 241 IVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDG 300
+++DSAYA+YIS DNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTV+PK+LLFSDG
Sbjct: 266 VIHDSAYAMYISGDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVVPKQLLFSDG 325
Query: 301 FPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLG 360
FPVAKDFNRIVCTCFNGASNISQAGGLACLSPEG KA+ +VIGFYKENT+II+ETF+SLG
Sbjct: 326 FPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGLKAMRDVIGFYKENTNIIMETFDSLG 385
Query: 361 FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGN 420
FKVYGGK+APYVWV FPGRSSWDVF+EILEKTHVVTTPGSGFGPGGEGFIRVSAFGHR N
Sbjct: 386 FKVYGGKDAPYVWVHFPGRSSWDVFAEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHREN 445
Query: 421 VLEACKRFKHLYK 433
VLEAC+RFK LYK
Sbjct: 446 VLEACRRFKQLYK 458
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255562088|ref|XP_002522052.1| Transaminase mtnE, putative [Ricinus communis] gi|223538651|gb|EEF40252.1| Transaminase mtnE, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/426 (85%), Positives = 393/426 (92%)
Query: 8 AKRISVCKCVAAPQEEKIAYKTKVSRNGNLGKLQAGYLFPEIARRKAAHMLKYPDAEVIS 67
+K +C+CVAAPQEE YKTKVSRN N+ KLQAGYLFPEIARR+ AH+ KYPD++VIS
Sbjct: 35 SKNFGICRCVAAPQEETTIYKTKVSRNVNMAKLQAGYLFPEIARRRNAHLQKYPDSKVIS 94
Query: 68 LGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEG 127
LGIGDTTEPIPEVITSA+AKRS ALST EGYSGYGAEQGEK LR AIASTFY DLGI E
Sbjct: 95 LGIGDTTEPIPEVITSAMAKRSQALSTLEGYSGYGAEQGEKLLRTAIASTFYGDLGIGED 154
Query: 128 DIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEY 187
DIFVSDGAKCDISRLQ++FGSNVT+AVQDPSYPAYVDSSVIMGQTG +QKDAE+YG IEY
Sbjct: 155 DIFVSDGAKCDISRLQVLFGSNVTIAVQDPSYPAYVDSSVIMGQTGLYQKDAERYGNIEY 214
Query: 188 MRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAY 247
MRC ENGFFPDLS V+RTDIIFFCSPNNPTG+AATREQLTRLVQFAKDNGSIIVYDSAY
Sbjct: 215 MRCNPENGFFPDLSKVSRTDIIFFCSPNNPTGSAATREQLTRLVQFAKDNGSIIVYDSAY 274
Query: 248 ALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDF 307
A+YISDD PRSIFEIPGAKEVA+ET+SFSKYAGFTGVRLGWTV+PKELLFSDGFPVAKDF
Sbjct: 275 AMYISDDKPRSIFEIPGAKEVALETASFSKYAGFTGVRLGWTVVPKELLFSDGFPVAKDF 334
Query: 308 NRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGK 367
NRIVCTCFNGASN+ QAGGLACLS EG A+ +V+GFYKEN DII++TFNSLGF VYGGK
Sbjct: 335 NRIVCTCFNGASNVVQAGGLACLSEEGRNAMQKVVGFYKENADIIMDTFNSLGFNVYGGK 394
Query: 368 NAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKR 427
NAPYVWV FPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHR NVLEAC+R
Sbjct: 395 NAPYVWVHFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRDNVLEACRR 454
Query: 428 FKHLYK 433
FK LYK
Sbjct: 455 FKQLYK 460
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297736361|emb|CBI25084.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/397 (87%), Positives = 374/397 (94%)
Query: 37 LGKLQAGYLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQE 96
+ KLQAGYLFPEIARR++AHMLKYPDA+VISLGIGDTTEPIPEVITS +AK++ ALST E
Sbjct: 1 MAKLQAGYLFPEIARRRSAHMLKYPDAQVISLGIGDTTEPIPEVITSGMAKKANALSTLE 60
Query: 97 GYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQD 156
GYSGYGAEQGE LRAAIAST+Y DL IEE DIFVSDGAK DISRLQ++FGSNVTMAVQD
Sbjct: 61 GYSGYGAEQGENRLRAAIASTYYGDLSIEESDIFVSDGAKSDISRLQVMFGSNVTMAVQD 120
Query: 157 PSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNN 216
PSYPAYVDSSVI+GQTG+FQKD EKYG IEYM+C ENGFFPDLSTV+RTDIIFFCSPNN
Sbjct: 121 PSYPAYVDSSVILGQTGQFQKDVEKYGNIEYMKCNPENGFFPDLSTVSRTDIIFFCSPNN 180
Query: 217 PTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFS 276
PTG AATREQLTRLVQFAKDNGSI+VYDSAYA+YISDD+PRSIFEIPGAKEVAIE SSFS
Sbjct: 181 PTGNAATREQLTRLVQFAKDNGSILVYDSAYAMYISDDSPRSIFEIPGAKEVAIEVSSFS 240
Query: 277 KYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFK 336
KYAGFTGVRLGWTV+PKELL+SDGFPVAKDFNRIVCT FNGASNISQAGGLACLSPEG +
Sbjct: 241 KYAGFTGVRLGWTVVPKELLYSDGFPVAKDFNRIVCTTFNGASNISQAGGLACLSPEGLE 300
Query: 337 AVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVT 396
A+H+V+GFY+ENT+II+ETF SLGF VYGGKNAPYVWV FPG+SSWDVFSEILEKTHVVT
Sbjct: 301 AMHKVVGFYQENTNIIMETFTSLGFSVYGGKNAPYVWVHFPGQSSWDVFSEILEKTHVVT 360
Query: 397 TPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433
TPGSGFGP G+GFIRVSAFGHRGNVLEACKRFK LYK
Sbjct: 361 TPGSGFGPAGDGFIRVSAFGHRGNVLEACKRFKQLYK 397
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 433 | ||||||
| TAIR|locus:2134243 | 461 | AGD2 "ABERRANT GROWTH AND DEAT | 0.995 | 0.934 | 0.799 | 1.4e-190 | |
| TAIR|locus:2040481 | 456 | ALD1 "AGD2-like defense respon | 0.946 | 0.899 | 0.6 | 2.9e-135 | |
| UNIPROTKB|Q74GT3 | 410 | dapL "LL-diaminopimelate amino | 0.909 | 0.960 | 0.440 | 4.1e-81 | |
| TIGR_CMR|GSU_0162 | 410 | GSU_0162 "aromatic aminotransf | 0.909 | 0.960 | 0.440 | 4.1e-81 | |
| TIGR_CMR|CHY_1492 | 390 | CHY_1492 "putative aspartate a | 0.831 | 0.923 | 0.306 | 3e-30 | |
| TIGR_CMR|DET_0739 | 388 | DET_0739 "aminotransferase, cl | 0.792 | 0.884 | 0.286 | 1.9e-26 | |
| UNIPROTKB|Q58786 | 418 | dapL "LL-diaminopimelate amino | 0.757 | 0.784 | 0.293 | 2e-25 | |
| UNIPROTKB|Q6LX26 | 416 | dapL "LL-diaminopimelate amino | 0.720 | 0.75 | 0.298 | 2.5e-25 | |
| TIGR_CMR|CHY_0115 | 392 | CHY_0115 "putative aspartate a | 0.792 | 0.875 | 0.257 | 5.3e-25 | |
| UNIPROTKB|Q81MJ3 | 392 | BAS3945 "Aminotransferase, cla | 0.789 | 0.872 | 0.265 | 5.1e-23 |
| TAIR|locus:2134243 AGD2 "ABERRANT GROWTH AND DEATH 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1847 (655.2 bits), Expect = 1.4e-190, P = 1.4e-190
Identities = 346/433 (79%), Positives = 389/433 (89%)
Query: 2 QNAWV-QAKRISVCKCVAAPQEEKIAYKTKVSRNGNLGKLQAGYLFPEIARRKAAHMLKY 60
+NA + AKR++ CKCVA PQE KI YKTKVSRN N+ KLQAGYLFPEIARR++AH+LKY
Sbjct: 30 RNACLPMAKRVNTCKCVATPQE-KIEYKTKVSRNSNMSKLQAGYLFPEIARRRSAHLLKY 88
Query: 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK 120
PDA+VISLGIGDTTEPIPEVITSA+AK+++ LST EGYSGYGAEQG KPLRAAIA TFY
Sbjct: 89 PDAQVISLGIGDTTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYG 148
Query: 121 DLGIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAE 180
LGI + D+FVSDGAKCDISRLQ++FGSNVT+AVQDPSYPAYVDSSVIMGQTG+F D +
Sbjct: 149 GLGIGDDDVFVSDGAKCDISRLQVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQ 208
Query: 181 KYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSI 240
KYG IEYMRCT ENGFFPDLSTV RTDIIFFCSPNNPTGAAATREQLT+LV+FAK NGSI
Sbjct: 209 KYGNIEYMRCTPENGFFPDLSTVGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSI 268
Query: 241 IVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDG 300
IVYDSAYA+Y+SDDNPRSIFEIPGA+EVA+ET+SFSKYAGFTGVRLGWTVIPK+LL+SDG
Sbjct: 269 IVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSKYAGFTGVRLGWTVIPKKLLYSDG 328
Query: 301 FPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLG 360
FPVAKDFNRI+CTCFNGASNISQAG LACL+PEG +A+H+VIGFYKENT+II++TF SLG
Sbjct: 329 FPVAKDFNRIICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSLG 388
Query: 361 FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTXXXXXXXXXXXXIRVSAFGHRGN 420
+ VYGGKNAPYVWV FP +SSWDVF+EILEKTHVVTT +RVSAFGHR N
Sbjct: 389 YDVYGGKNAPYVWVHFPNQSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHREN 448
Query: 421 VLEACKRFKHLYK 433
+LEAC+RFK LYK
Sbjct: 449 ILEACRRFKQLYK 461
|
|
| TAIR|locus:2040481 ALD1 "AGD2-like defense response protein 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1325 (471.5 bits), Expect = 2.9e-135, P = 2.9e-135
Identities = 246/410 (60%), Positives = 312/410 (76%)
Query: 23 EKIAYKTKVSRNGNLGKLQAGYLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVIT 82
+K+ TK+ RN NL KL+ YLFPEI RR+ H+ K+P+ ++ISLG GDTTEPIPE IT
Sbjct: 30 KKLGGSTKLVRNVNLEKLKNNYLFPEINRRELEHIEKHPNVQLISLGTGDTTEPIPEQIT 89
Query: 83 SALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRL 142
S ++ ++ LST EGY GYG EQG K LR AIA TFY+DL ++ ++FVSDGA+ DISRL
Sbjct: 90 SHMSNFAHGLSTVEGYRGYGLEQGNKTLRKAIAETFYRDLHVKSNEVFVSDGAQSDISRL 149
Query: 143 QIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST 202
Q++ GSNVT+AVQDP++PAY+DSSVI+GQTG F + +KY + YM C N FFPDL+
Sbjct: 150 QLLLGSNVTIAVQDPTFPAYIDSSVIIGQTGHFHEKTKKYQNVVYMPCGPNNSFFPDLAM 209
Query: 203 VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEI 262
RTD+IFFCSPNNPTG A+R+QL +LV FAK NGSII++DSAYA +I D +PRSI+EI
Sbjct: 210 TPRTDVIFFCSPNNPTGYVASRKQLHQLVDFAKTNGSIIIFDSAYAAFIEDGSPRSIYEI 269
Query: 263 PGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNIS 322
PGA+EVAIE SSFSK+AGFTGVRLGW++IP ELL+S+GFP+ DF+RIV T FNGASNI+
Sbjct: 270 PGAREVAIEVSSFSKFAGFTGVRLGWSIIPDELLYSNGFPIINDFHRIVTTSFNGASNIA 329
Query: 323 QAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSW 382
QAGGLACLS G K + V +YKEN I+++T SLG KVYGG NAPY+WV F G SW
Sbjct: 330 QAGGLACLSSGGLKEIRSVNNYYKENRKILMDTLVSLGLKVYGGVNAPYLWVHFKGSKSW 389
Query: 383 DVFSEILEKTHVVTTXXXXXXXXXXXXIRVSAFGHRGNVLEACKRFKHLY 432
DVF+EILE TH++T +R+S FG R +++EA KR ++ +
Sbjct: 390 DVFNEILENTHIITVPGSGFGPGGEEYLRISGFGRRDHIVEASKRLQNFF 439
|
|
| UNIPROTKB|Q74GT3 dapL "LL-diaminopimelate aminotransferase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 814 (291.6 bits), Expect = 4.1e-81, P = 4.1e-81
Identities = 178/404 (44%), Positives = 240/404 (59%)
Query: 34 NGNLGKLQAGYLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALS 93
N + KL+AGYLFPEI RR P A+VI LGIGD T P+ + A + L+
Sbjct: 5 NDHYLKLKAGYLFPEIGRRVREFAAANPSAKVIRLGIGDVTRPLAPAVIKAFHEAVDDLA 64
Query: 94 TQEGYSGYGAEQGEKPLRAAIASTFYKDLGIE--EGDIFVSDGAKCDISRLQIVFGSNVT 151
T E ++GYG EQG L AI YK LG++ ++F+SDG+KCD + + +F +
Sbjct: 65 TTENFAGYGPEQGYDWLINAIIEKSYKPLGVDLKTEEMFISDGSKCDCANILDIFALDNV 124
Query: 152 MAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFF 211
+A+ DP YP Y D++V++G+TGE D Y I YM CT ENGF P L T + DII+
Sbjct: 125 VAIGDPVYPVYNDTNVMIGRTGEAD-DKGYYKGIVYMPCTEENGFIPSLPT-EKVDIIYL 182
Query: 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAI 270
C PNNPTG AT+ +L + V +A N ++I +D+AY +I+D P SI+EI GAK+ AI
Sbjct: 183 CFPNNPTGTVATKAELKKWVDYAIANDAVIFFDAAYEAFITDPAIPHSIYEIEGAKKCAI 242
Query: 271 ETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRI----VCTCFNGASNISQAGG 326
E SFSK AGFTGVR G V+P+E++ + FN++ T FNGAS Q
Sbjct: 243 EFRSFSKTAGFTGVRCGLVVVPEEVMGTTPTGEKYSFNKLWLRRTTTKFNGASYPVQKAA 302
Query: 327 LACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPG-RSSWDVF 385
A S EG++ E+I +Y EN II E + G VYGG NAPY+W++ PG SSWD F
Sbjct: 303 AAVYSDEGWQQNKEIIDYYMENARIIREGLAAAGLTVYGGVNAPYIWLKTPGGMSSWDFF 362
Query: 386 SEILEKTHVVTTXXXXXXXXXXXXIRVSAFGHRGNVLEACKRFK 429
++L + +VV T R+SAFGHR NV+EA +R K
Sbjct: 363 DKLLNECNVVGTPGSGFGPSGEGFFRLSAFGHRENVIEAVERIK 406
|
|
| TIGR_CMR|GSU_0162 GSU_0162 "aromatic aminotransferase, putative" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 814 (291.6 bits), Expect = 4.1e-81, P = 4.1e-81
Identities = 178/404 (44%), Positives = 240/404 (59%)
Query: 34 NGNLGKLQAGYLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALS 93
N + KL+AGYLFPEI RR P A+VI LGIGD T P+ + A + L+
Sbjct: 5 NDHYLKLKAGYLFPEIGRRVREFAAANPSAKVIRLGIGDVTRPLAPAVIKAFHEAVDDLA 64
Query: 94 TQEGYSGYGAEQGEKPLRAAIASTFYKDLGIE--EGDIFVSDGAKCDISRLQIVFGSNVT 151
T E ++GYG EQG L AI YK LG++ ++F+SDG+KCD + + +F +
Sbjct: 65 TTENFAGYGPEQGYDWLINAIIEKSYKPLGVDLKTEEMFISDGSKCDCANILDIFALDNV 124
Query: 152 MAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFF 211
+A+ DP YP Y D++V++G+TGE D Y I YM CT ENGF P L T + DII+
Sbjct: 125 VAIGDPVYPVYNDTNVMIGRTGEAD-DKGYYKGIVYMPCTEENGFIPSLPT-EKVDIIYL 182
Query: 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAI 270
C PNNPTG AT+ +L + V +A N ++I +D+AY +I+D P SI+EI GAK+ AI
Sbjct: 183 CFPNNPTGTVATKAELKKWVDYAIANDAVIFFDAAYEAFITDPAIPHSIYEIEGAKKCAI 242
Query: 271 ETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRI----VCTCFNGASNISQAGG 326
E SFSK AGFTGVR G V+P+E++ + FN++ T FNGAS Q
Sbjct: 243 EFRSFSKTAGFTGVRCGLVVVPEEVMGTTPTGEKYSFNKLWLRRTTTKFNGASYPVQKAA 302
Query: 327 LACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPG-RSSWDVF 385
A S EG++ E+I +Y EN II E + G VYGG NAPY+W++ PG SSWD F
Sbjct: 303 AAVYSDEGWQQNKEIIDYYMENARIIREGLAAAGLTVYGGVNAPYIWLKTPGGMSSWDFF 362
Query: 386 SEILEKTHVVTTXXXXXXXXXXXXIRVSAFGHRGNVLEACKRFK 429
++L + +VV T R+SAFGHR NV+EA +R K
Sbjct: 363 DKLLNECNVVGTPGSGFGPSGEGFFRLSAFGHRENVIEAVERIK 406
|
|
| TIGR_CMR|CHY_1492 CHY_1492 "putative aspartate aminotransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
Identities = 124/405 (30%), Positives = 178/405 (43%)
Query: 44 YLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA 103
YLF I R A K +VISLGIGD P P+ I L A E + Y +
Sbjct: 13 YLFARIERLIAEK--KEAGVDVISLGIGDPDTPTPKHIIEELY---LAAQNPENHQ-YPS 66
Query: 104 EQGEKPLRAAIASTFYKDLGIE---EGDIFVSDGAKCDISRLQIVF-GSNVTMAVQDPSY 159
G R A+A+ + + G+E + ++ G+K I+ + + + V DP Y
Sbjct: 67 SVGMLSYRQAVAAWYARRFGVELDPKTEVVSLLGSKEGIAHISWCYVDPGDLVLVPDPGY 126
Query: 160 PAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST----VAR-TDIIFFCSP 214
P Y +++ G T Y M ENGF PDL + VAR ++F P
Sbjct: 127 PVYEGGTILAGGT--------TYK----MPLKPENGFLPDLDSIPEEVARKAKLMFINYP 174
Query: 215 NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPR--SIFEIPGAKEVAIET 272
NNPTGA A ++V FAK ++ +D+AY+ I+ D R S E+ GAK+V IE
Sbjct: 175 NNPTGAVADLGFFEKVVHFAKKYEILVCHDAAYS-EITFDGYRAPSFLEVKGAKDVGIEF 233
Query: 273 SSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKD-FNRIVCTCFNGASNISQAGGLACLS 331
S SK TG R+GW V G A D R+ +G Q G+ L
Sbjct: 234 HSLSKTYNMTGWRIGWAV---------GNAKAIDALGRLKSNIDSGVFQAIQYAGIKALE 284
Query: 332 -PEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSWDVFSE-IL 389
P+ V E+ Y + D+++ET N LG+ + K Y+W P + F+E ++
Sbjct: 285 GPQD--VVKELCDLYAQRRDLVIETLNKLGWNLSKPKGTFYIWAPVPKGFTSASFAEYLI 342
Query: 390 EKTHVVTTXXXXXXXXXXXXIRVSAFGHRGNVLEACKRFK-HLYK 433
EK VV T R+S + EA +R + HL K
Sbjct: 343 EKAGVVITPGNGYGTNGEGYFRISLTIPTSRLKEALQRIEQHLGK 387
|
|
| TIGR_CMR|DET_0739 DET_0739 "aminotransferase, classes I and II" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 109/381 (28%), Positives = 163/381 (42%)
Query: 44 YLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA 103
YLF +I+++ A K EVIS IGD P P+ I + L K + + Y
Sbjct: 13 YLFVQISKKIAEKRAK--GEEVISFAIGDPDLPTPKHILAELCKAAEDPANHR----YPE 66
Query: 104 EQGEKPLRAAIASTFYKDLGIE---EGDIFVSDGAKCDISRLQIVFGSNVTMA-VQDPSY 159
+G LR A+A + K G++ + ++ G+K I F +A V DP+Y
Sbjct: 67 TEGLPVLRKAMAEWYEKRFGVKLNPDTEVLPLIGSKEGIGHAAWCFLDPGDVALVPDPAY 126
Query: 160 PAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV-----ARTDIIFFCSP 214
P Y SS + G AE + YM EN F PD + + ++ I++ P
Sbjct: 127 PVYAISSQLAG--------AEVF----YMPLNKENNFLPDFNAIPQDVLSKAKILWINYP 174
Query: 215 NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDD-NPRSIFEIPGAKEVAIETS 273
NNPTGA A + +FA + + +D Y+ D P S E GAKEV IE
Sbjct: 175 NNPTGAVAGLDFFKEAAEFAAKHNLAVCHDGPYSEIAFDGYRPVSFLEADGAKEVGIEFH 234
Query: 274 SFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPE 333
S SK TG R+G V +++ D R +G Q +A L+
Sbjct: 235 SLSKSYNMTGWRIGMAVGNAKMI--DAL------RRFKSNLDSGIPQAIQLMAIAALNGS 286
Query: 334 GFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFP-GRSSWDVFSEILEKT 392
+ + Y+ D +VE ++G +V K + Y+W P G +S +E+L+KT
Sbjct: 287 Q-DVISQNCAVYQRRRDRLVEALRNIGMEVTAPKASLYIWAPVPEGYTSASFATELLDKT 345
Query: 393 HVVTTXXXXXXXXXXXXIRVS 413
VV T IR+S
Sbjct: 346 GVVVTPGTGYGTSGEGYIRLS 366
|
|
| UNIPROTKB|Q58786 dapL "LL-diaminopimelate aminotransferase" [Methanocaldococcus jannaschii DSM 2661 (taxid:243232)] | Back alignment and assigned GO terms |
|---|
Score = 297 (109.6 bits), Expect = 2.0e-25, P = 2.0e-25
Identities = 112/381 (29%), Positives = 174/381 (45%)
Query: 38 GKLQAGYLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPI-PEVITSALAKRSYALSTQE 96
GK Y F +I R K M ++PD E+I +G+G+ E PEVI L + + +
Sbjct: 19 GKEDVIYKFEKIKRAKQEAMKRHPDMELIDMGVGEPDEMADPEVIR-VLCEEAKKWENR- 76
Query: 97 GYSGYGAEQGEKPLRAAIASTFYKDLGIEEGD----IFVSDGAKCDISRLQIVF---GSN 149
GY A+ G + L+ A+ K G+++ D + S G+K ++ + F G
Sbjct: 77 GY----ADNGIQELKDAVPPYMEKVYGVKDIDPVNEVIHSIGSKPALAYITSAFINPGDV 132
Query: 150 VTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA----- 204
M V P YP + G G++ + EN F PDL ++
Sbjct: 133 CLMTV--PGYPVTATHTKWYG------------GEVYNLPLLEENDFLPDLESIPEDIKK 178
Query: 205 RTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPG 264
R I++ PNNPTGA AT++ +V FA +N I+V D+AY + D P S +
Sbjct: 179 RAKILYLNYPNNPTGAQATKKFYKEVVDFAFENEVIVVQDAAYGALVYDGKPLSFLSVKD 238
Query: 265 AKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNIS-Q 323
AKEV +E SFSK TG RL + ++ EL+ F KD N F+ I Q
Sbjct: 239 AKEVGVEIHSFSKAFNMTGWRLAF-LVGNELIIK-AFATVKD-N------FDSGQFIPIQ 289
Query: 324 AGGLACLS-PEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSW 382
G+ CL PE + V + Y+ +V+ N +GFK Y++V+ P +++
Sbjct: 290 KAGIYCLQHPEITERVRQK---YERRLRKMVKILNEVGFKARMPGGTFYLYVKSPTKANG 346
Query: 383 ------DVFSEILEKTHVVTT 397
+ FS+ L K +++T
Sbjct: 347 IEFKTAEDFSQYLIKEKLIST 367
|
|
| UNIPROTKB|Q6LX26 dapL "LL-diaminopimelate aminotransferase" [Methanococcus maripaludis S2 (taxid:267377)] | Back alignment and assigned GO terms |
|---|
Score = 296 (109.3 bits), Expect = 2.5e-25, P = 2.5e-25
Identities = 106/355 (29%), Positives = 156/355 (43%)
Query: 36 NLGKLQAGYLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQ 95
+ GK Y F +I R K A LKYPD E+I +G+G+ E E + L + +
Sbjct: 17 SFGKEDVIYKFEKIKRAKQAAKLKYPDMELIDMGVGEPDEMADESVVEVLCEEAKK-HVN 75
Query: 96 EGYSGYGAEQGEKPLRAAIASTF-YKDLGIEEGDIFVSDGAKCDISRLQIVF---GSNVT 151
GYS G + + + + F KDL ++ S G+K ++ + VF G
Sbjct: 76 RGYSDNGVQALKDEIPIYLEKIFGVKDLD-PVNEVVHSIGSKPALAYITSVFINPGDVTL 134
Query: 152 MAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVAR-----T 206
M V P YP + G G +E + +N F P+L +++
Sbjct: 135 MTV--PGYPVTATHTKWYG------------GSVETLPLLEKNNFLPELDAISKEVRENA 180
Query: 207 DIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAK 266
I++ PNNPTGA AT++ V FA +N I++ D+AYA D P S + AK
Sbjct: 181 KILYLNYPNNPTGAQATKKFYKEAVDFAFENDLIVIQDAAYAALTYGDKPLSFLSVKDAK 240
Query: 267 EVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNIS-QAG 325
EV +E SFSK TG RL + V EL+ GF KD N ++ I Q
Sbjct: 241 EVGVEIHSFSKAYNMTGWRLAF-VAGNELIVR-GFAAVKD-N------YDSGQFIPIQKA 291
Query: 326 GLACLS-PEGFKAVHEVIGFYKENTDIIVETFNSLGF--KVYGGKNAPYVWVQFP 377
G+ CL PE + Y+ +V+ GF K+ GG Y++V+ P
Sbjct: 292 GIHCLRHPE---ITEKTRAKYERRLSKMVKILKEAGFNAKMPGGTF--YLYVKAP 341
|
|
| TIGR_CMR|CHY_0115 CHY_0115 "putative aspartate aminotransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 287 (106.1 bits), Expect = 5.3e-25, P = 5.3e-25
Identities = 98/380 (25%), Positives = 169/380 (44%)
Query: 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGI 124
VISLG+G+ P+ +T + S ++GY+ Y + QG LR I+ + G+
Sbjct: 32 VISLGVGE-----PDFVTPWYIREEGIYSLEKGYTMYTSNQGLLELREEISRYLLRLTGV 86
Query: 125 EEG---DIFVSDGAKCDIS-RLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAE 180
++ V+ G + L+ + + + +PSY +Y ++++ G
Sbjct: 87 AYDPVQEVLVTVGVSEGVDLALRALVSPGDEVLIPEPSYVSYGPTTMLAG---------- 136
Query: 181 KYGKIEYMRCTAENGF--FPDLSTVA---RTDIIFFCSPNNPTGAAATREQLTRLVQFAK 235
GK Y+R ENGF P+L A ++ I+ C PNNPTGA T + L +L+
Sbjct: 137 --GKPVYIRTRPENGFKLTPELLEEAITPKSKILLLCYPNNPTGAVMTADDLAKLLPVIA 194
Query: 236 DNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKEL 295
++ +++ D YA + S+ PG KE + + FSK TG RLG+ PKE+
Sbjct: 195 EHDLLVISDEIYAELTYEGKHVSVASFPGMKERTVILNGFSKAFAMTGWRLGYAAGPKEI 254
Query: 296 LFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVET 355
+ + + K ++ C A +Q + L + AV +++ Y I+VE
Sbjct: 255 IAA----MTK-IHQYTMLC---APITAQKAAIEALKNQN-DAVKKMVEEYNYRRRILVEA 305
Query: 356 FNSLGFKVYGGKNAPYVW--VQFPGRSSWDVFSEILEKTHVVTTXXXXXXXXXXXXIRVS 413
F+ +G ++ K A Y + + G SS + +L + V IR+S
Sbjct: 306 FSEMGLWLFEPKGAFYAFPDISATGLSSEEFAERLLFEEKVAVVPGSAFGPSGEGFIRIS 365
Query: 414 AFGHRGNVLEACKRFKHLYK 433
R +++EA KR K +
Sbjct: 366 YATARKDLIEALKRIKRFVR 385
|
|
| UNIPROTKB|Q81MJ3 BAS3945 "Aminotransferase, classes I and II" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 278 (102.9 bits), Expect = 5.1e-23, P = 5.1e-23
Identities = 101/380 (26%), Positives = 172/380 (45%)
Query: 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--- 120
+VI+LG G+ +P P+ I AL + A T + Y +G + L+ A+A TFY+
Sbjct: 34 DVINLGQGNPDQPTPQHIVKAL--QDAAEKTI--HHKYPPFRGHESLKEAVA-TFYQREY 88
Query: 121 DLGIE-EGDIFVSDGAKCDISRLQIVFGS-NVTMAVQDPSYPAYVDSSVIMGQTGEFQKD 178
D+ + + ++ + G K + L + F + T+ V DP YP Y+ S V + +
Sbjct: 89 DVVVNPKTEVAILFGGKAGLVELPVCFTNPGDTILVPDPGYPDYL-SGVALAKA------ 141
Query: 179 AEKYGKIEYMRCTAENGFFPDLSTV-----ARTDIIFFCSPNNPTGAAATREQLTRLVQF 233
+ E M AEN F PD + + R ++F PNNPTGA A+++ + F
Sbjct: 142 -----QFETMPLIAENNFLPDYTKIDDSIAERAKLMFLNYPNNPTGATASKDFFDETIHF 196
Query: 234 AKDNGSIIVYDSAY-ALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIP 292
A + ++V+D AY A+ P S + GAK+ IE + SK G R+ + V
Sbjct: 197 ANKHNILVVHDFAYGAIGFDGQKPVSFLQADGAKDTGIEIYTLSKTFNMAGWRIAFAVGN 256
Query: 293 KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDII 352
+ ++ + + +D + + F GA I A A LS + V +++ Y+ + +
Sbjct: 257 ESVI--ETINLLQD--HMYVSIF-GA--IQDAAREALLSSQS--CVIDLVNSYESRRNAL 307
Query: 353 VETFNSLGFKVYGGKNAPYVWVQFPGRSSWDVFSEIL-EKTHVVTTXXXXXXXXXXXXIR 411
+ +S+G+ V + + W+ P + + FS+IL EK HV +R
Sbjct: 308 ISACHSIGWNVDIPTGSFFAWLPVPEGYTSEQFSDILLEKAHVAVAPGVGFGEHGEGYVR 367
Query: 412 VSAFGHRGNVLEACKRFKHL 431
V + EA R L
Sbjct: 368 VGLLHTEDRLREAINRIDKL 387
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q31PY6 | DAPAT_SYNE7 | 2, ., 6, ., 1, ., 8, 3 | 0.4653 | 0.9099 | 0.9586 | yes | no |
| A5GIN1 | DAPAT_SYNPW | 2, ., 6, ., 1, ., 8, 3 | 0.4669 | 0.9214 | 0.9779 | yes | no |
| Q5LC03 | DAPAT_BACFN | 2, ., 6, ., 1, ., 8, 3 | 0.4345 | 0.9145 | 0.9658 | yes | no |
| B9M384 | DAPAT_GEOSF | 2, ., 6, ., 1, ., 8, 3 | 0.4558 | 0.9191 | 0.9707 | yes | no |
| B5EGX2 | DAPAT_GEOBB | 2, ., 6, ., 1, ., 8, 3 | 0.4656 | 0.9191 | 0.9683 | yes | no |
| Q04UL5 | DAPAT_LEPBJ | 2, ., 6, ., 1, ., 8, 3 | 0.4729 | 0.9145 | 0.9705 | yes | no |
| Q7UZZ3 | DAPAT_PROMP | 2, ., 6, ., 1, ., 8, 3 | 0.4596 | 0.9214 | 0.9779 | yes | no |
| B8HJY4 | DAPAT_CYAP4 | 2, ., 6, ., 1, ., 8, 3 | 0.4925 | 0.9099 | 0.9586 | yes | no |
| Q46IX2 | DAPAT_PROMT | 2, ., 6, ., 1, ., 8, 3 | 0.4583 | 0.9214 | 0.9779 | yes | no |
| A2C4T7 | DAPAT_PROM1 | 2, ., 6, ., 1, ., 8, 3 | 0.4583 | 0.9214 | 0.9779 | yes | no |
| A1ATI6 | DAPAT_PELPD | 2, ., 6, ., 1, ., 8, 3 | 0.4705 | 0.9191 | 0.9707 | yes | no |
| Q10MQ2 | DAPAT_ORYSJ | 2, ., 6, ., 1, ., 8, 3 | 0.8114 | 0.9676 | 0.9030 | yes | no |
| Q2JLL9 | DAPAT_SYNJB | 2, ., 6, ., 1, ., 8, 3 | 0.4570 | 0.9168 | 0.9543 | yes | no |
| B1XKF6 | DAPAT_SYNP2 | 2, ., 6, ., 1, ., 8, 3 | 0.4866 | 0.9260 | 0.9780 | yes | no |
| B0JUM0 | DAPAT_MICAN | 2, ., 6, ., 1, ., 8, 3 | 0.4850 | 0.9053 | 0.9537 | yes | no |
| B1WSG7 | DAPAT_CYAA5 | 2, ., 6, ., 1, ., 8, 3 | 0.4828 | 0.9191 | 0.9683 | yes | no |
| Q8YM38 | DAPT1_NOSS1 | 2, ., 6, ., 1, ., 8, 3 | 0.4803 | 0.9191 | 0.9683 | yes | no |
| Q8F814 | DAPAT_LEPIN | 2, ., 6, ., 1, ., 8, 3 | 0.4753 | 0.9145 | 0.9705 | yes | no |
| Q93ZN9 | DAPAT_ARATH | 2, ., 6, ., 1, ., 8, 3 | 0.8244 | 0.9976 | 0.9370 | yes | no |
| Q64SY6 | DAPAT_BACFR | 2, ., 6, ., 1, ., 8, 3 | 0.4345 | 0.9145 | 0.9658 | yes | no |
| Q24S01 | DAPAT_DESHY | 2, ., 6, ., 1, ., 8, 3 | 0.4485 | 0.9214 | 0.9708 | yes | no |
| B0CDH5 | DAPAT_ACAM1 | 2, ., 6, ., 1, ., 8, 3 | 0.4689 | 0.9076 | 0.9608 | yes | no |
| Q3MAL4 | DAPT1_ANAVT | 2, ., 6, ., 1, ., 8, 3 | 0.4730 | 0.9191 | 0.9683 | yes | no |
| Q2JS04 | DAPAT_SYNJA | 2, ., 6, ., 1, ., 8, 3 | 0.4545 | 0.9168 | 0.9659 | yes | no |
| A6L7E4 | DAPAT_BACV8 | 2, ., 6, ., 1, ., 8, 3 | 0.4381 | 0.9076 | 0.9608 | yes | no |
| A3DK17 | DAPAT_CLOTH | 2, ., 6, ., 1, ., 8, 3 | 0.4556 | 0.9145 | 0.9658 | yes | no |
| Q3AMU5 | DAPAT_SYNSC | 2, ., 6, ., 1, ., 8, 3 | 0.4743 | 0.9214 | 0.9779 | yes | no |
| Q7U4C3 | DAPAT_SYNPX | 2, ., 6, ., 1, ., 8, 3 | 0.4743 | 0.9214 | 0.9779 | yes | no |
| Q0ID68 | DAPAT_SYNS3 | 2, ., 6, ., 1, ., 8, 3 | 0.4669 | 0.9214 | 0.9779 | yes | no |
| Q18T09 | DAPAT_DESHD | 2, ., 6, ., 1, ., 8, 3 | 0.4485 | 0.9214 | 0.9708 | yes | no |
| C6E9Q7 | DAPAT_GEOSM | 2, ., 6, ., 1, ., 8, 3 | 0.4681 | 0.9191 | 0.9683 | yes | no |
| B7KL61 | DAPAT_CYAP7 | 2, ., 6, ., 1, ., 8, 3 | 0.4900 | 0.9053 | 0.9537 | yes | no |
| Q39Z65 | DAPAT_GEOMG | 2, ., 6, ., 1, ., 8, 3 | 0.4632 | 0.9191 | 0.9707 | yes | no |
| A5GD93 | DAPAT_GEOUR | 2, ., 6, ., 1, ., 8, 3 | 0.4607 | 0.9191 | 0.9707 | yes | no |
| A9KJ19 | DAPAT_CLOPH | 2, ., 6, ., 1, ., 8, 3 | 0.4577 | 0.9145 | 0.9801 | yes | no |
| B7JVL5 | DAPAT_CYAP8 | 2, ., 6, ., 1, ., 8, 3 | 0.4850 | 0.9053 | 0.9537 | yes | no |
| A5GW23 | DAPAT_SYNR3 | 2, ., 6, ., 1, ., 8, 3 | 0.4605 | 0.9145 | 0.9705 | yes | no |
| O26158 | DAPAT_METTH | 2, ., 6, ., 1, ., 8, 3 | 0.4400 | 0.9214 | 0.9731 | yes | no |
| A2BYM6 | DAPAT_PROM5 | 2, ., 6, ., 1, ., 8, 3 | 0.4621 | 0.9214 | 0.9779 | yes | no |
| Q04YV8 | DAPAT_LEPBL | 2, ., 6, ., 1, ., 8, 3 | 0.4704 | 0.9145 | 0.9705 | yes | no |
| Q10ZC3 | DAPAT_TRIEI | 2, ., 6, ., 1, ., 8, 3 | 0.4754 | 0.9191 | 0.9683 | yes | no |
| Q72NJ3 | DAPAT_LEPIC | 2, ., 6, ., 1, ., 8, 3 | 0.4753 | 0.9145 | 0.9705 | yes | no |
| B2J2U3 | DAPAT_NOSP7 | 2, ., 6, ., 1, ., 8, 3 | 0.4779 | 0.9191 | 0.9683 | yes | no |
| Q5N492 | DAPAT_SYNP6 | 2, ., 6, ., 1, ., 8, 3 | 0.4653 | 0.9099 | 0.9586 | yes | no |
| A3PEY9 | DAPAT_PROM0 | 2, ., 6, ., 1, ., 8, 3 | 0.4611 | 0.9145 | 0.9705 | yes | no |
| Q74GT3 | DAPAT_GEOSL | 2, ., 6, ., 1, ., 8, 3 | 0.4656 | 0.9191 | 0.9707 | yes | no |
| Q6MDE0 | DAPAT_PARUW | 2, ., 6, ., 1, ., 8, 3 | 0.5586 | 0.9214 | 0.9708 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.6.1 | 0.983 |
| 4th Layer | 4.4.1.8 | LOW CONFIDENCE prediction! |
| 3rd Layer | 2.6.1.83 | 0.979 |
| 4th Layer | 2.6.1.9 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 433 | |||
| PRK07590 | 409 | PRK07590, PRK07590, L,L-diaminopimelate aminotrans | 0.0 | |
| TIGR03542 | 402 | TIGR03542, DAPAT_plant, LL-diaminopimelate aminotr | 0.0 | |
| COG0436 | 393 | COG0436, COG0436, Aspartate/tyrosine/aromatic amin | 3e-85 | |
| cd00609 | 350 | cd00609, AAT_like, Aspartate aminotransferase fami | 1e-75 | |
| PRK09276 | 385 | PRK09276, PRK09276, LL-diaminopimelate aminotransf | 8e-62 | |
| TIGR03540 | 383 | TIGR03540, DapC_direct, LL-diaminopimelate aminotr | 1e-58 | |
| PRK08068 | 389 | PRK08068, PRK08068, transaminase; Reviewed | 7e-49 | |
| PRK05764 | 393 | PRK05764, PRK05764, aspartate aminotransferase; Pr | 1e-45 | |
| PRK06290 | 410 | PRK06290, PRK06290, aspartate aminotransferase; Pr | 1e-40 | |
| PRK05942 | 394 | PRK05942, PRK05942, aspartate aminotransferase; Pr | 1e-37 | |
| PRK07682 | 378 | PRK07682, PRK07682, hypothetical protein; Validate | 2e-36 | |
| PRK07681 | 399 | PRK07681, PRK07681, aspartate aminotransferase; Pr | 3e-36 | |
| PRK08361 | 391 | PRK08361, PRK08361, aspartate aminotransferase; Pr | 2e-35 | |
| PRK07337 | 388 | PRK07337, PRK07337, aminotransferase; Validated | 3e-35 | |
| pfam00155 | 357 | pfam00155, Aminotran_1_2, Aminotransferase class I | 4e-34 | |
| PRK09148 | 405 | PRK09148, PRK09148, aminotransferase; Validated | 1e-29 | |
| PRK07366 | 388 | PRK07366, PRK07366, succinyldiaminopimelate transa | 2e-29 | |
| PRK08175 | 395 | PRK08175, PRK08175, aminotransferase; Validated | 2e-26 | |
| TIGR03537 | 350 | TIGR03537, DapC, succinyldiaminopimelate transamin | 5e-26 | |
| PRK08636 | 403 | PRK08636, PRK08636, aspartate aminotransferase; Pr | 5e-25 | |
| PRK06348 | 384 | PRK06348, PRK06348, aspartate aminotransferase; Pr | 1e-24 | |
| PRK07683 | 387 | PRK07683, PRK07683, aminotransferase A; Validated | 9e-24 | |
| PRK06108 | 382 | PRK06108, PRK06108, aspartate aminotransferase; Pr | 4e-23 | |
| COG0079 | 356 | COG0079, HisC, Histidinol-phosphate/aromatic amino | 3e-22 | |
| PRK07550 | 386 | PRK07550, PRK07550, hypothetical protein; Provisio | 4e-22 | |
| TIGR03538 | 393 | TIGR03538, DapC_gpp, succinyldiaminopimelate trans | 1e-21 | |
| COG1167 | 459 | COG1167, ARO8, Transcriptional regulators containi | 2e-19 | |
| PRK08960 | 387 | PRK08960, PRK08960, hypothetical protein; Provisio | 3e-19 | |
| TIGR01141 | 346 | TIGR01141, hisC, histidinol-phosphate aminotransfe | 7e-19 | |
| PRK07309 | 391 | PRK07309, PRK07309, aromatic amino acid aminotrans | 5e-18 | |
| PRK06836 | 394 | PRK06836, PRK06836, aspartate aminotransferase; Pr | 4e-17 | |
| TIGR03539 | 357 | TIGR03539, DapC_actino, succinyldiaminopimelate tr | 5e-17 | |
| PRK08363 | 398 | PRK08363, PRK08363, alanine aminotransferase; Vali | 3e-16 | |
| PRK09147 | 396 | PRK09147, PRK09147, succinyldiaminopimelate transa | 5e-16 | |
| PRK05166 | 371 | PRK05166, PRK05166, histidinol-phosphate aminotran | 1e-15 | |
| PRK07568 | 397 | PRK07568, PRK07568, aspartate aminotransferase; Pr | 1e-14 | |
| PRK07324 | 373 | PRK07324, PRK07324, transaminase; Validated | 1e-14 | |
| TIGR01265 | 403 | TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine | 2e-14 | |
| COG1168 | 388 | COG1168, MalY, Bifunctional PLP-dependent enzyme w | 4e-14 | |
| PRK07865 | 364 | PRK07865, PRK07865, N-succinyldiaminopimelate amin | 2e-13 | |
| PRK06225 | 380 | PRK06225, PRK06225, aspartate aminotransferase; Pr | 4e-13 | |
| PLN00175 | 413 | PLN00175, PLN00175, aminotransferase family protei | 5e-13 | |
| TIGR03947 | 359 | TIGR03947, viomycin_VioD, capreomycidine synthase | 3e-12 | |
| PRK03321 | 352 | PRK03321, PRK03321, putative aminotransferase; Pro | 5e-12 | |
| TIGR01264 | 401 | TIGR01264, tyr_amTase_E, tyrosine aminotransferase | 1e-11 | |
| PRK06107 | 402 | PRK06107, PRK06107, aspartate aminotransferase; Pr | 1e-11 | |
| PRK02731 | 367 | PRK02731, PRK02731, histidinol-phosphate aminotran | 2e-11 | |
| PRK00950 | 361 | PRK00950, PRK00950, histidinol-phosphate aminotran | 2e-11 | |
| PRK03158 | 359 | PRK03158, PRK03158, histidinol-phosphate aminotran | 1e-10 | |
| PRK06358 | 354 | PRK06358, PRK06358, threonine-phosphate decarboxyl | 1e-10 | |
| PRK09440 | 416 | PRK09440, avtA, valine--pyruvate transaminase; Pro | 2e-10 | |
| TIGR04350 | 384 | TIGR04350, C_S_lyase_PatB, putative C-S lyase | 2e-10 | |
| PRK09265 | 404 | PRK09265, PRK09265, aminotransferase AlaT; Validat | 2e-10 | |
| PRK05957 | 389 | PRK05957, PRK05957, aspartate aminotransferase; Pr | 4e-10 | |
| PRK05839 | 374 | PRK05839, PRK05839, hypothetical protein; Provisio | 4e-10 | |
| COG3977 | 417 | COG3977, COG3977, Alanine-alpha-ketoisovalerate (o | 6e-10 | |
| PRK07777 | 387 | PRK07777, PRK07777, aminotransferase; Validated | 1e-09 | |
| PLN00145 | 430 | PLN00145, PLN00145, tyrosine/nicotianamine aminotr | 6e-09 | |
| PRK03317 | 368 | PRK03317, PRK03317, histidinol-phosphate aminotran | 1e-08 | |
| PRK01533 | 366 | PRK01533, PRK01533, histidinol-phosphate aminotran | 2e-08 | |
| PRK14807 | 351 | PRK14807, PRK14807, histidinol-phosphate aminotran | 2e-08 | |
| PRK14809 | 357 | PRK14809, PRK14809, histidinol-phosphate aminotran | 3e-08 | |
| PLN02656 | 409 | PLN02656, PLN02656, tyrosine transaminase | 7e-08 | |
| PRK09105 | 370 | PRK09105, PRK09105, putative aminotransferase; Pro | 9e-08 | |
| PRK03967 | 337 | PRK03967, PRK03967, histidinol-phosphate aminotran | 1e-07 | |
| TIGR01140 | 330 | TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phospha | 5e-07 | |
| PRK01688 | 351 | PRK01688, PRK01688, histidinol-phosphate aminotran | 1e-06 | |
| PLN02187 | 462 | PLN02187, PLN02187, rooty/superroot1 | 1e-06 | |
| PRK13355 | 517 | PRK13355, PRK13355, bifunctional HTH-domain contai | 1e-06 | |
| PRK08354 | 311 | PRK08354, PRK08354, putative aminotransferase; Pro | 3e-06 | |
| PRK09082 | 386 | PRK09082, PRK09082, methionine aminotransferase; V | 3e-06 | |
| PRK12414 | 384 | PRK12414, PRK12414, putative aminotransferase; Pro | 3e-06 | |
| COG1448 | 396 | COG1448, TyrB, Aspartate/tyrosine/aromatic aminotr | 1e-05 | |
| PLN00143 | 409 | PLN00143, PLN00143, tyrosine/nicotianamine aminotr | 3e-05 | |
| PRK08056 | 356 | PRK08056, PRK08056, threonine-phosphate decarboxyl | 3e-05 | |
| PRK04781 | 364 | PRK04781, PRK04781, histidinol-phosphate aminotran | 4e-05 | |
| PRK08912 | 387 | PRK08912, PRK08912, hypothetical protein; Provisio | 5e-05 | |
| PRK04635 | 354 | PRK04635, PRK04635, histidinol-phosphate aminotran | 7e-05 | |
| PTZ00377 | 481 | PTZ00377, PTZ00377, alanine aminotransferase; Prov | 1e-04 | |
| PLN02231 | 534 | PLN02231, PLN02231, alanine transaminase | 1e-04 | |
| PRK04870 | 356 | PRK04870, PRK04870, histidinol-phosphate aminotran | 3e-04 | |
| PRK09275 | 527 | PRK09275, PRK09275, aspartate aminotransferase; Pr | 3e-04 | |
| TIGR03801 | 521 | TIGR03801, asp_4_decarbox, aspartate 4-decarboxyla | 3e-04 | |
| PLN03026 | 380 | PLN03026, PLN03026, histidinol-phosphate aminotran | 4e-04 | |
| PRK08153 | 369 | PRK08153, PRK08153, histidinol-phosphate aminotran | 8e-04 | |
| PTZ00376 | 404 | PTZ00376, PTZ00376, aspartate aminotransferase; Pr | 0.003 | |
| PRK07908 | 349 | PRK07908, PRK07908, hypothetical protein; Provisio | 0.004 |
| >gnl|CDD|181053 PRK07590, PRK07590, L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 561 bits (1449), Expect = 0.0
Identities = 206/409 (50%), Positives = 262/409 (64%), Gaps = 10/409 (2%)
Query: 31 VSRNGNLGKLQAGYLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSY 90
N N KL+AGYLFPEIARR A P+A++I LGIGD T+P+P + A+ K
Sbjct: 2 AKINENYLKLKAGYLFPEIARRVNAFREANPEAKIIRLGIGDVTQPLPPAVIEAMHKAVD 61
Query: 91 ALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLG--IEEGDIFVSDGAKCDISRLQIVFGS 148
+ T E + GYG EQG LR IA Y+ G I +IF+SDGAKCD + +FG
Sbjct: 62 EMGTAETFRGYGPEQGYDFLREKIAENDYQARGCDISADEIFISDGAKCDTGNILDIFGP 121
Query: 149 NVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDI 208
+ T+AV DP YP YVD++V+ G+TGE +D Y I Y+ CTAEN F P+L + DI
Sbjct: 122 DNTIAVTDPVYPVYVDTNVMAGRTGEANEDGR-YSGIVYLPCTAENNFVPELPE-EKVDI 179
Query: 209 IFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKE 267
I+ C PNNPTG T+EQL V +AK+NGS+I++D+AY +ISD + P SI+EI GA+E
Sbjct: 180 IYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARE 239
Query: 268 VAIETSSFSKYAGFTGVRLGWTVIPKELLF----SDGFPVAKDFNRIVCTCFNGASNISQ 323
AIE SFSK AGFTG R +TV+PKEL +G + +NR T FNG S I Q
Sbjct: 240 CAIEFRSFSKTAGFTGTRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQ 299
Query: 324 AGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFP-GRSSW 382
A SPEG + E+I +Y EN II E S GF+VYGG NAPY+WV+ P G SSW
Sbjct: 300 RAAEAVYSPEGKAQIKELIDYYMENAKIIREGLESAGFEVYGGVNAPYIWVKTPDGMSSW 359
Query: 383 DVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHL 431
D F ++L++ +VV TPGSGFGP GEG+ R+SAFG R NVLEA +R K
Sbjct: 360 DFFDKLLQEANVVGTPGSGFGPSGEGYFRLSAFGSRENVLEAMERIKKA 408
|
Length = 409 |
| >gnl|CDD|163316 TIGR03542, DAPAT_plant, LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Score = 520 bits (1340), Expect = 0.0
Identities = 210/403 (52%), Positives = 273/403 (67%), Gaps = 4/403 (0%)
Query: 31 VSRNGNLGKLQAGYLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSY 90
+ RN + KL++ YLF EI +R A K P A++I LGIGDTT+P+P + A
Sbjct: 1 MKRNPHFLKLKSSYLFSEINKRVAEFRKKNPSADIIRLGIGDTTQPLPASVIEAFHNAVD 60
Query: 91 ALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQIVFGSNV 150
L++ E + GYG EQG LR AIA Y+ I+ +IF+SDGAKCD+ RLQ +FG +
Sbjct: 61 ELASPETFRGYGPEQGYPFLREAIAENDYRGR-IDPEEIFISDGAKCDVFRLQSLFGPDN 119
Query: 151 TMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIF 210
T+AVQDP YPAY+DS+V+ G+ G D +Y KI Y+ CTAEN F P+L DII+
Sbjct: 120 TVAVQDPVYPAYLDSNVMAGRAGVLD-DDGRYSKITYLPCTAENNFIPELPEEPHIDIIY 178
Query: 211 FCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVA 269
CSPNNPTG T+EQL LV +A ++GS+I++D+AY+ +ISD + P SIFEIPGA+ A
Sbjct: 179 LCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGARFCA 238
Query: 270 IETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLAC 329
IE SFSK AGFTGVRLGWTV+PKEL ++DG V +D+ R CT FNGAS Q A
Sbjct: 239 IEFRSFSKTAGFTGVRLGWTVVPKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAG 298
Query: 330 LSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFP-GRSSWDVFSEI 388
+ EG + + E I +Y EN I+ + + GFKVYGG++APY+WV+ P G SSWD F +
Sbjct: 299 YAGEGLQPILEAISYYMENARILRKALEAAGFKVYGGEHAPYLWVKTPEGISSWDFFDFL 358
Query: 389 LEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHL 431
L + HVV TPGSGFGP GEGF+R SAFG R N++EAC+R K
Sbjct: 359 LYEYHVVGTPGSGFGPSGEGFVRFSAFGKRENIIEACERIKEA 401
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Length = 402 |
| >gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 265 bits (680), Expect = 3e-85
Identities = 126/402 (31%), Positives = 188/402 (46%), Gaps = 41/402 (10%)
Query: 44 YLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA 103
Y F +A KAA LK +VI L IG+ P PE I A + AL +EG + Y
Sbjct: 10 YTFAVLAEAKAAAELK-GKEDVIDLSIGEPDFPTPEHIIEAAIE---AL--EEGGTHYTP 63
Query: 104 EQGEKPLRAAIASTFYKDLGIE---EGDIFVSDGAKCDISRLQIVFGSNV-TMAVQDPSY 159
G LR AIA + + G++ E +I V+ GAK + + + + + DP Y
Sbjct: 64 SAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALLNPGDEVLIPDPGY 123
Query: 160 PAYVDSSVIMGQTGEFQKDAEKYGKIEYMRC-TAENGFFPDLSTVA-----RTDIIFFCS 213
P+Y + + G GK + ENGF PDL + +T I S
Sbjct: 124 PSYEAAVKLAG------------GKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNS 171
Query: 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIET 272
PNNPTGA ++E+L +V+ A+++ II+ D Y + D SI E+ GA++ I
Sbjct: 172 PNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITI 231
Query: 273 SSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSP 332
+SFSK G TG R+GW V P E L ++ + A +Q +A L+
Sbjct: 232 NSFSKTYGMTGWRIGWVVGPPEEL-------IAALRKLKSYLTSCAPTPAQYAAIAALNG 284
Query: 333 EGFKAVHE-VIGFYKENTDIIVETFNSL-GFKVYGG-KNAPYVWVQFP-GRSSWDVFSEI 388
V E + Y+E D++VE N + G V + A Y++ + P S + ++
Sbjct: 285 PQSDEVVEEMREEYRERRDLLVEALNEIGGLSVVKPPEGAFYLFPKIPELLDSEEFAKKL 344
Query: 389 LEKTHVVTTPGSGFG-PGGEGFIRVSAFGHRGNVLEACKRFK 429
LE+ V PGSGFG P GEG++R+S + EA +R
Sbjct: 345 LEEAGVAVVPGSGFGEPPGEGYVRLSLATSEETLEEALRRLA 386
|
Length = 393 |
| >gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family | Back alignment and domain information |
|---|
Score = 239 bits (612), Expect = 1e-75
Identities = 109/375 (29%), Positives = 168/375 (44%), Gaps = 37/375 (9%)
Query: 66 ISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLG-- 123
I L IG+ P P + ALA + G GY + G LR AIA + G
Sbjct: 1 IDLSIGEPDFPPPPEVLEALAAAALR----AGLLGYYPDPGLPELREAIAEWLGRRGGVD 56
Query: 124 IEEGDIFVSDGAKCDISRLQIVF---GSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAE 180
+ +I V++GA+ +S L G V V DP+YP Y ++ + G
Sbjct: 57 VPPEEIVVTNGAQEALSLLLRALLNPGDEV--LVPDPTYPGYEAAARLAG---------- 104
Query: 181 KYGKIEYMRCTAENGFFPDLSTVA-----RTDIIFFCSPNNPTGAAATREQLTRLVQFAK 235
++ + E GF DL + +T +++ +PNNPTGA + E+L L + AK
Sbjct: 105 --AEVVPVPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELAELAK 162
Query: 236 DNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKEL 295
+G +I+ D AYA + D P + A E I SFSK G G+R+G+ + P E
Sbjct: 163 KHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEE 222
Query: 296 LFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVET 355
L + +++ +G S +SQA A L +G + + E+ Y+ D ++E
Sbjct: 223 L-------LERLKKLLPYTTSGPSTLSQAAAAAALD-DGEEHLEELRERYRRRRDALLEA 274
Query: 356 FNSLGFKV-YGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA 414
LG V ++W+ P + +L + VV PGS FG GGEGF+R+S
Sbjct: 275 LKELGPLVVVKPSGGFFLWLDLPEGDDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSF 334
Query: 415 FGHRGNVLEACKRFK 429
+ EA +R
Sbjct: 335 ATPEEELEEALERLA 349
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350 |
| >gnl|CDD|181749 PRK09276, PRK09276, LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 204 bits (522), Expect = 8e-62
Identities = 129/401 (32%), Positives = 191/401 (47%), Gaps = 42/401 (10%)
Query: 44 YLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA 103
YLF EI ++KA + + +VISLGIGD P P+ I A+ K + Y +
Sbjct: 14 YLFAEIDKKKAEKIAR--GVDVISLGIGDPDLPTPDHIIEAMCKAVEDPENHQ----YPS 67
Query: 104 EQGEKPLRAAIASTFYKDLGIE---EGDIFVSDGAKCDISRLQIVF--GSNVTMAVQDPS 158
+G R A+A + + G+E E ++ G+K I+ + + F +V + V DP
Sbjct: 68 YEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAHIPLAFVNPGDVVL-VPDPG 126
Query: 159 YPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV-----ARTDIIFFCS 213
YP Y ++ G G+ +M ENGF PDL + + ++F
Sbjct: 127 YPVYKIGTIFAG------------GEPYFMPLKEENGFLPDLDAIPEDVAKKAKLMFINY 174
Query: 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYA-LYISDDNPRSIFEIPGAKEVAIET 272
PNNPTGA A E +V FAK I+ +D+AY+ + P S E+PGAK+V IE
Sbjct: 175 PNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEF 234
Query: 273 SSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACL-S 331
S SK TG R+G+ V +L+ ++ +G Q G+A L
Sbjct: 235 HSLSKTYNMTGWRIGFAVGNADLI--------AGLGKVKSNVDSGVFQAIQEAGIAALNG 286
Query: 332 PEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFP-GRSSWDVFSEILE 390
P+ V E+ Y+E DI+VE LG +V K YVW P G +S + + +L+
Sbjct: 287 PQEV--VEELRKIYQERRDILVEGLRKLGLEVEPPKATFYVWAPVPKGYTSAEFATLLLD 344
Query: 391 KTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHL 431
K VV TPG+GFG GEG+ R++ + EA +R K L
Sbjct: 345 KAGVVVTPGNGFGEYGEGYFRIALTVPDERIEEAVERIKKL 385
|
Length = 385 |
| >gnl|CDD|234250 TIGR03540, DapC_direct, LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Score = 196 bits (500), Expect = 1e-58
Identities = 128/401 (31%), Positives = 183/401 (45%), Gaps = 42/401 (10%)
Query: 44 YLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA 103
YLF EI ++KA + +VISLGIGD P P+ I AL K + Y +
Sbjct: 12 YLFAEIDKKKAEKKAE--GVDVISLGIGDPDLPTPKHIVEALCKAAENPENHR----YPS 65
Query: 104 EQGEKPLRAAIASTFYKDLGIE---EGDIFVSDGAKCDISRLQIVF---GSNVTMAVQDP 157
+G R A+A + + G+E E ++ G+K I+ + + F G V V DP
Sbjct: 66 YEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFVNPGDIVL--VPDP 123
Query: 158 SYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV-----ARTDIIFFC 212
YP Y ++ G G+ M ENGF PD + + ++F
Sbjct: 124 GYPVYRIGTLFAG------------GEPYEMPLKEENGFLPDFDAIPEDIAKKAKLMFIN 171
Query: 213 SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYA-LYISDDNPRSIFEIPGAKEVAIE 271
PNNPTGA A + LV+FAK+ I+ +D+AY+ + S E+ GAK+V IE
Sbjct: 172 YPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIE 231
Query: 272 TSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLS 331
S SK TG R+G V +L+ G K +G Q +A L+
Sbjct: 232 FHSLSKTYNMTGWRIGMAVGNADLI--AGLGKVKT------NVDSGVFQAIQYAAIAALN 283
Query: 332 PEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFP-GRSSWDVFSEILE 390
V E+ Y+ D+++E +G V K YVWV P G +S + + +LE
Sbjct: 284 GPQ-DVVKEIRKIYQRRRDLLLEALKKIGIDVEKPKATFYVWVPVPEGYTSAEFAARLLE 342
Query: 391 KTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHL 431
+T VV TPG GFG GEG+IR+S + EA R K L
Sbjct: 343 ETGVVVTPGVGFGEYGEGYIRISLTVPDERLEEAVARIKKL 383
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia and the clade containing the Chlamydia gene is a neighboring one in the same pfam00155 superfamily so it seems quite reasonable that these enzymes catalyze the same transformation. Length = 383 |
| >gnl|CDD|181219 PRK08068, PRK08068, transaminase; Reviewed | Back alignment and domain information |
|---|
Score = 170 bits (433), Expect = 7e-49
Identities = 113/404 (27%), Positives = 178/404 (44%), Gaps = 54/404 (13%)
Query: 45 LFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAE 104
L ++ ++ A +VI+LG G+ +P PE I AL + A + Y
Sbjct: 20 LVAKVNKKVAEG------HDVINLGQGNPDQPTPEHIVEAL--QEAAENPA--NHKYSPF 69
Query: 105 QGEKPLRAAIASTFYKD-LGIE---EGDIFVSDGAKCDISRL-QIVFGSNVTMAVQDPSY 159
+G L+ A A FYK G+ E ++ + G K + L Q + T+ V DP Y
Sbjct: 70 RGYPFLKEAAA-DFYKREYGVTLDPETEVAILFGGKAGLVELPQCLMNPGDTILVPDPGY 128
Query: 160 PAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV-----ARTDIIFFCSP 214
P Y+ S V + + + E M AEN F PD + + + +++ P
Sbjct: 129 PDYL-SGVALAR-----------AQFETMPLIAENNFLPDYTKIPEEVAEKAKLMYLNYP 176
Query: 215 NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAY-ALYISDDNPRSIFEIPGAKEVAIETS 273
NNPTGA AT+ V FAK + +V+D AY A+ P S + PGAK+V IE
Sbjct: 177 NNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELY 236
Query: 274 SFSKYAGFTGVRLGWTVIPKEL-----LFSDGFPVAKDFNRIVCTCFNGASNISQAGGLA 328
+ SK G R+ + V + + L D + + F I A A
Sbjct: 237 TLSKTFNMAGWRVAFAVGNESVIEAINLLQD---------HLFVSLFGA---IQDAAIEA 284
Query: 329 CLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSWDVFSEI 388
LS + V E++ Y+ + + +G++V K + + W+ P + + F+++
Sbjct: 285 LLSDQ--SCVAELVARYESRRNAFISACREIGWEVDAPKGSFFAWMPVPKGYTSEQFADL 342
Query: 389 -LEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHL 431
LEK HV PG+GFG GEG++RV + EA +R L
Sbjct: 343 LLEKAHVAVAPGNGFGEHGEGYVRVGLLTDEERLREAVERIGKL 386
|
Length = 389 |
| >gnl|CDD|235596 PRK05764, PRK05764, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 162 bits (412), Expect = 1e-45
Identities = 104/393 (26%), Positives = 170/393 (43%), Gaps = 67/393 (17%)
Query: 65 VISLGIGDTTEP---IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKD 121
VISLG G EP PE I A A AL +G + Y G LR AIA+ +D
Sbjct: 33 VISLGAG---EPDFDTPEHIKEA-AIE--AL--DDGKTKYTPAAGIPELREAIAAKLKRD 84
Query: 122 LGIE--EGDIFVSDGAKCDISRLQIVFGSNVTMAVQD---------PSYPAYVDSSVIMG 170
G++ + V+ GAK Q ++ N MA+ D P + +Y + + G
Sbjct: 85 NGLDYDPSQVIVTTGAK------QALY--NAFMALLDPGDEVIIPAPYWVSYPEMVKLAG 136
Query: 171 QTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA-----RTDIIFFCSPNNPTGAAATRE 225
G ++ ENGF + + +T + SP+NPTGA + E
Sbjct: 137 ------------GVPVFVPTGEENGFKLTVEQLEAAITPKTKALILNSPSNPTGAVYSPE 184
Query: 226 QLTRLVQFAKDNGSIIVYDSAYALYISDDNP-RSIFEI-PGAKEVAIETSSFSKYAGFTG 283
+L + A ++ ++ D Y + D SI + P ++ I + FSK TG
Sbjct: 185 ELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTG 244
Query: 284 VRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIG 343
RLG+ PKEL K +++ + ++I+Q +A L+ V E+
Sbjct: 245 WRLGYAAGPKEL--------IKAMSKLQSHSTSNPTSIAQYAAVAALN-GPQDEVEEMRQ 295
Query: 344 FYKENTDIIVETFNSL-GFKVYGGKNAPYVWV---QFPGRSSWDV--FSE-ILEKTHVVT 396
++E D++V+ N + G + + A YV+ + G+S D F+E +LE+ V
Sbjct: 296 AFEERRDLMVDGLNEIPGLECPKPEGAFYVFPNVSKLLGKSITDSLEFAEALLEEAGVAV 355
Query: 397 TPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFK 429
PG FG G++R+S ++ E +R +
Sbjct: 356 VPGIAFGA--PGYVRLSYATSLEDLEEGLERIE 386
|
Length = 393 |
| >gnl|CDD|235772 PRK06290, PRK06290, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 149 bits (377), Expect = 1e-40
Identities = 119/400 (29%), Positives = 175/400 (43%), Gaps = 55/400 (13%)
Query: 36 NLGKLQAGYLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQ 95
N GK Y F +I R K A K+PD E+I +G+G+ E E + L + +
Sbjct: 17 NFGKETVIYKFEKIKRAKRAAKEKHPDMELIDMGVGEPDEMADESVVEVLCEEA-KKPEN 75
Query: 96 EGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGD----IFVSDGAKCDISRLQIVF---GS 148
GY A+ G + + A A K G+++ D + S G+K ++ L F G
Sbjct: 76 RGY----ADNGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALAMLPSCFINPGD 131
Query: 149 NVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV----- 203
M V P YP + G ++ G++ + EN F PDL ++
Sbjct: 132 VTLMTV--PGYP-------VTGTHTKYYG-----GEVYNLPLLEENNFLPDLDSIPKDIK 177
Query: 204 ARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIP 263
+ +++ PNNPTGA AT+E +V FAK+N I+V D+AYA D P S +P
Sbjct: 178 EKAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVP 237
Query: 264 GAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQ 323
GAKEV +E S SK TG RL + V+ EL+ F KD N +G Q
Sbjct: 238 GAKEVGVEIHSLSKAYNMTGWRLAF-VVGNELIVK-AFATVKDNND------SGQFIAIQ 289
Query: 324 AGGLACLS-PEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFP----- 377
G+ L PE ++ Y D +V+ N +GFK Y++V+ P
Sbjct: 290 KAGIYALDHPE---ITEKIREKYSRRLDKLVKILNEVGFKAEMPGGTFYLYVKAPKGTKS 346
Query: 378 GR--SSWDVFSEILEKTH-VVTTPGSGFGPGGEGFIRVSA 414
G + + FS+ L K + T P G F+R S
Sbjct: 347 GIKFENAEEFSQYLIKEKLISTVPWDDAGH----FLRFSV 382
|
Length = 410 |
| >gnl|CDD|180317 PRK05942, PRK05942, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 1e-37
Identities = 110/383 (28%), Positives = 179/383 (46%), Gaps = 48/383 (12%)
Query: 64 EVISLGIGDTTEPIPE-VITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDL 122
++I LG+G+ P+ VI +A+A AL+ + GY +G R AI +++
Sbjct: 36 DLIDLGMGNPDGAAPQPVIEAAIA----ALADPQ-NHGYPPFEGTASFRQAITDWYHRRY 90
Query: 123 GIE---EGDIFVSDGAKCDISRLQIVF---GSNVTMAVQDPSYPAYVDSSVIMGQTGEFQ 176
G+E + + G+K ++ L + + G V V P+YPA+ +I G
Sbjct: 91 GVELDPDSEALPLLGSKEGLTHLALAYVNPGDVVL--VPSPAYPAHFRGPLIAG------ 142
Query: 177 KDAEKYGKIEYMRCTAENGFFPDLSTVA-----RTDIIFFCSPNNPTGAAATREQLTRLV 231
+I + EN + DLS++ + I++F P+NPT A A RE +V
Sbjct: 143 ------AQIYPIILKPENDWLIDLSSIPEEVAQQAKILYFNYPSNPTTATAPREFFEEIV 196
Query: 232 QFAKDNGSIIVYDSAYA-LYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTV 290
FA+ ++V+D YA L P S+ EIPGAK++ +E + SK G R+G+ V
Sbjct: 197 AFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVV 256
Query: 291 IPKELLFSDGFPVAK---DFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKE 347
+ ++ G K D+ S + +A A P+ + + +V Y+
Sbjct: 257 GNRHII--QGLRTLKTNLDYGIF--------SALQKAAETALQLPDSY--LQQVQERYRT 304
Query: 348 NTDIIVETFNSLGFKVYGGKNAPYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGG 406
D +++ LG+ + K Y+WV P G S D +L+KT VV TPG+ FG GG
Sbjct: 305 RRDFLIQGLGELGWNIPPTKATMYLWVPCPVGMGSTDFALNVLQKTGVVVTPGNAFGEGG 364
Query: 407 EGFIRVSAFGHRGNVLEACKRFK 429
EG++R+S + EA R K
Sbjct: 365 EGYVRISLIADCDRLGEALDRLK 387
|
Length = 394 |
| >gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated | Back alignment and domain information |
|---|
Score = 137 bits (346), Expect = 2e-36
Identities = 102/377 (27%), Positives = 157/377 (41%), Gaps = 39/377 (10%)
Query: 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGI 124
VISLG+G+ P+ +T + + S ++GY+ Y A G LR IA K +
Sbjct: 22 VISLGVGE-----PDFVTPWNVREASIRSLEQGYTSYTANAGLLELRQEIAKYLKKRFAV 76
Query: 125 E---EGDIFVSDGAK--CDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDA 179
+I V+ GA D++ ++ + + + +PS+ +Y + G
Sbjct: 77 SYDPNDEIIVTVGASQALDVA-MRAIINPGDEVLIVEPSFVSYAPLVTLAG--------- 126
Query: 180 EKYGKIEYMRCTAENGF---FPDLSTV--ARTDIIFFCSPNNPTGAAATREQLTRLVQFA 234
G + T EN F + A+T I CSPNNPTGA + +L +
Sbjct: 127 ---GVPVPVATTLENEFKVQPAQIEAAITAKTKAILLCSPNNPTGAVLNKSELEEIAVIV 183
Query: 235 KDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKE 294
+ + I++ D YA D+ S I G +E I S FSK TG RLG+ P
Sbjct: 184 EKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAPVY 243
Query: 295 LLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVE 354
+ ++C A ++Q L L G V + Y++ + V
Sbjct: 244 FS---EAMLKIHQYSMMC-----APTMAQFAALEALR-AGNDDVIRMRDSYRKRRNFFVT 294
Query: 355 TFNSLGFKVYGGKNAPYVW--VQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRV 412
+FN +G + A Y + + G SS + ++L + V PGS FG GEGFIR
Sbjct: 295 SFNEIGLTCHVPGGAFYAFPSISSTGLSSEEFAEQLLLEEKVAVVPGSVFGESGEGFIRC 354
Query: 413 SAFGHRGNVLEACKRFK 429
S + EA KR K
Sbjct: 355 SYATSLEQLQEAMKRMK 371
|
Length = 378 |
| >gnl|CDD|181081 PRK07681, PRK07681, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 3e-36
Identities = 96/380 (25%), Positives = 165/380 (43%), Gaps = 39/380 (10%)
Query: 45 LFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAE 104
+F E+ K ++I L IG+ P + + + + +E Y GY
Sbjct: 16 IFSELGAYKKEK--IAAGHKMIDLSIGNPDMPPADFVREEMVH---TANQKESY-GY-TL 68
Query: 105 QGEKPLRAAIASTFYKDLGI---EEGDIFVSDGAKCDISRLQIVFGS-NVTMAVQDPSYP 160
G + A+ + + + ++ + G++ + L +V+ + + V DP Y
Sbjct: 69 SGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPMVYANPGDIILVPDPGYT 128
Query: 161 AYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA-----RTDIIFFCSPN 215
AY + G A Y YM EN F PDL + + ++ P
Sbjct: 129 AYETGIQMAG--------ATSY----YMPLKKENDFLPDLELIPEEIADKAKMMILNFPG 176
Query: 216 NPTGAAATREQLTRLVQFAKDNGSIIVYDSAYA-LYISDDNPRSIFEIPGAKEVAIETSS 274
NP A A + ++ FAK + I+V+D AYA Y + P S +PGAKEV +E +S
Sbjct: 177 NPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINS 236
Query: 275 FSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEG 334
SK G R+G+ + +E++ + + + F I +A A +
Sbjct: 237 LSKSYSLAGSRIGYMIGNEEIV----RALTQFKSNTDYGVF---LPIQKAACAALRNGAA 289
Query: 335 FKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFP-GRSSWDVFSEILEKTH 393
F + I Y+E D +V+ F + G+ V + +VW + P G +S ++++ +
Sbjct: 290 FCEKNRGI--YQERRDTLVDGFRTFGWNVDKPAGSMFVWAEIPKGWTSLSFAYALMDRAN 347
Query: 394 VVTTPGSGFGPGGEGFIRVS 413
VV TPG FGP GEGF+R++
Sbjct: 348 VVVTPGHAFGPHGEGFVRIA 367
|
Length = 399 |
| >gnl|CDD|236248 PRK08361, PRK08361, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 135 bits (340), Expect = 2e-35
Identities = 114/379 (30%), Positives = 173/379 (45%), Gaps = 42/379 (11%)
Query: 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIAS---TFYKD 121
VISLGIG+ P+ I A AKR+ EG++ Y G LR AIA FY
Sbjct: 35 VISLGIGEPDFDTPKNIKEA-AKRA----LDEGWTHYTPNAGIPELREAIAEYYKKFYG- 88
Query: 122 LGIEEGDIFVSDGA-KCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAE 180
+ ++ ++ V+ GA + + + + + DP++ YV+ + I
Sbjct: 89 VDVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCYVEDAKIAE---------- 138
Query: 181 KYGKIEYMRCTAENGFFPDLSTV-----ARTDIIFFCSPNNPTGAAATREQLTRLVQFAK 235
K + EN F PD + RT +I PNNPTGA +E + A+
Sbjct: 139 --AKPIRIPLREENEFQPDPDELLELITKRTRMIVINYPNNPTGATLDKEVAKAIADIAE 196
Query: 236 DNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKEL 295
D I+ D Y ++ + + I A + I +SFSK TG RLG+ + P++
Sbjct: 197 DYNIYILSDEPYEHFLYEG-AKHYPMIKYAPDNTILANSFSKTFAMTGWRLGFVIAPEQ- 254
Query: 296 LFSDGFPVAKDFNRIVCTCF-NGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVE 354
V KD ++ N AS + AG A S E +KAV E+ Y E ++++
Sbjct: 255 -------VIKDMIKLHAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLK 307
Query: 355 TFNSL-GFKVYGGKNAPYVWVQFP--GRSSWDVFSE-ILEKTHVVTTPGSGFGPGGEGFI 410
+ KV+ K A YV+ G SS D F+E +LEK VV PG+ FG GEG+I
Sbjct: 308 RLKEMPHIKVFEPKGAFYVFANIDETGMSSED-FAEWLLEKARVVVIPGTAFGKAGEGYI 366
Query: 411 RVSAFGHRGNVLEACKRFK 429
R+S + ++EA +R +
Sbjct: 367 RISYATSKEKLIEAMERME 385
|
Length = 391 |
| >gnl|CDD|180937 PRK07337, PRK07337, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 134 bits (338), Expect = 3e-35
Identities = 117/409 (28%), Positives = 165/409 (40%), Gaps = 62/409 (15%)
Query: 48 EIARRKAAHMLKYPDAEVISLGIG--DTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQ 105
E+A K A L+ ++I +GIG D T P V+ +A A + + G + Y +
Sbjct: 17 ELA--KEAQALERAGRDIIHMGIGEPDFTAP-EPVVEAA------ARALRRGVTQYTSAL 67
Query: 106 GEKPLRAAIASTFYKD---LGIEEGDIFVSDGAKCDISRLQ------IVFGSNVTMAVQD 156
G PLR AIA+ +Y L + I V+ GA + L + G V M D
Sbjct: 68 GLAPLREAIAA-WYARRFGLDVAPERIVVTAGAS---AALLLACLALVERGDEVLMP--D 121
Query: 157 PSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA-----RTDIIFF 211
PSYP F AE G+ + F + V RT +
Sbjct: 122 PSYPC----------NRHFVAAAE--GRPVLVPSGPAERFQLTAADVEAAWGERTRGVLL 169
Query: 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIE 271
SP+NPTG + ++L R+V+ + G + D Y D P S + + I
Sbjct: 170 ASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSALSL---GDDVIT 226
Query: 272 TSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLS 331
+SFSKY TG RLGW V+P+ L+ F ++ F AS ++Q LAC
Sbjct: 227 INSFSKYFNMTGWRLGWLVVPEALV-----GT---FEKLAQNLFICASALAQHAALACFE 278
Query: 332 PEGFKAVHEVIGFYKENTDIIVETFNSLGFKV-YGGKNAPYVW-----VQFPGRS-SWDV 384
P+ +K D IV SLGFKV A YV+ V P S +
Sbjct: 279 PDTLAIYERRRAEFKRRRDFIVPALESLGFKVPVMPDGAFYVYADCRGVAHPAAGDSAAL 338
Query: 385 FSEILEKTHVVTTPGSGFGP-GGEGFIRVSAFGHRGNVLEACKRFKHLY 432
+L VV PG FGP +IR+S + EA R L+
Sbjct: 339 TQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYATSMSRLEEAVARLGKLF 387
|
Length = 388 |
| >gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 4e-34
Identities = 82/388 (21%), Positives = 145/388 (37%), Gaps = 53/388 (13%)
Query: 63 AEVISLGIGD--TTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK 120
+ I+LG + + A + YG G LR A+A +
Sbjct: 1 TDKINLGSNEYLGDSGTLPAVAKAEKD----ALAGGTRNLYGPTDGLPELREALAKFLGR 56
Query: 121 DLGIE---EGDIFVSDGAKCDISRLQIVF----GSNVTMAVQDPSYPAYVDSSVIMGQTG 173
++ E + GA +I L + G + V P+YP+Y+ + G
Sbjct: 57 SPVLKLDREAAVVFGSGAGANIEALIFLLRLNPGDAI--LVPAPTYPSYIRIFRLAG--- 111
Query: 174 EFQKDAEKYGKIEYMRCTAENGFFPDL--------STVARTDIIFFCSPNNPTGAAATRE 225
G++ + N F D ++ SP+NPTG AT E
Sbjct: 112 ---------GEVVRYPLYSSNDFHLDFDALEAALKEATEGNKVVLHTSPHNPTGTVATLE 162
Query: 226 QLTRLVQFAKDNGSIIVYDSAYA--LYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTG 283
+L +L+ AK++ +++ D AYA ++ S D + + + + SFSK G G
Sbjct: 163 ELEKLLDLAKEHNILLLVDEAYAGFVFGSLDAVATRALLAEGPNLLV-VGSFSKAFGLAG 221
Query: 284 VRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKA--VHEV 341
R+G+ + ++ + R + S QA A LS A + E+
Sbjct: 222 WRVGYILGNAAVI--SQ---LRKLARPFYS-----STHLQAAAAAALSDPLLVASELEEM 271
Query: 342 IGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSG 401
KE D + + + G V + ++ ++ + +LE+ V TPGS
Sbjct: 272 RQRIKERRDYLRDGLEAAGLSVLPSQAGFFLLTGLDPEAALALAQVLLEEVGVYVTPGSS 331
Query: 402 FGPGGEGFIRVSAFGH-RGNVLEACKRF 428
F GG G++R++ G + E +
Sbjct: 332 F--GGPGWLRITVAGGTEEELEELLEAI 357
|
Length = 357 |
| >gnl|CDD|181674 PRK09148, PRK09148, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 119 bits (299), Expect = 1e-29
Identities = 97/383 (25%), Positives = 170/383 (44%), Gaps = 41/383 (10%)
Query: 44 YLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA 103
Y+F ++ R KAA + A++I LG+G+ P P+ I L + + T Y A
Sbjct: 13 YVFEQVNRLKAA--ARAAGADIIDLGMGNPDLPTPQHIVDKLCETAQDPRTH----RYSA 66
Query: 104 EQGEKPLRAAIASTFYKDLGIE---EGDIFVSDGAKCDISRL-QIVFGSNVTMAVQDPSY 159
+G LR A A+ + + G++ + + + G+K + + Q + + +PSY
Sbjct: 67 SKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMAQAITAPGDVILCPNPSY 126
Query: 160 PAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS-----TVARTDIIFFCSP 214
P + ++ G G I + + FFP L ++ + + P
Sbjct: 127 PIHAFGFIMAG------------GVIRSVPAEPDEEFFPALERAVRHSIPKPIALIVNYP 174
Query: 215 NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYA-LYISDDNPRSIFEIPGAKEVAIETS 273
+NPT A + +V FAK + II+ D AY+ +Y + P S+ ++PGAK+V +E +
Sbjct: 175 SNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFT 234
Query: 274 SFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPE 333
S SK G R+G+ V + L+ + R+ GA Q A L+
Sbjct: 235 SMSKTFSMAGWRMGFAVGNERLIAA--------LTRVKSYLDYGAFTPIQVAATAALNGP 286
Query: 334 GFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGR----SSWDVFSEIL 389
+ E+ YK+ D++VE+F G+ + + + W P S + ++
Sbjct: 287 Q-DCIAEMRELYKKRRDVLVESFGRAGWDIPPPAASMFAWAPIPEAFRHLGSLEFSKLLV 345
Query: 390 EKTHVVTTPGSGFGPGGEGFIRV 412
EK V PG GFG G+G++R+
Sbjct: 346 EKADVAVAPGVGFGEHGDGYVRI 368
|
Length = 405 |
| >gnl|CDD|180947 PRK07366, PRK07366, succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 2e-29
Identities = 93/376 (24%), Positives = 164/376 (43%), Gaps = 44/376 (11%)
Query: 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLG 123
E+I L +G + P P A+A+ + ST GY G R A A + + G
Sbjct: 31 ELIDLSLGSSDLPAPAHALEAIAQSLHDPSTH----GYLLFHGTLDFREAAAQWYEQRFG 86
Query: 124 IE---EGDIFVSDGAKCDISRLQIVFGSNVTMA-VQDPSYPAYVDSSVIMGQTGEFQKDA 179
+ E ++ G++ + L + + A + DP YP++ + G
Sbjct: 87 LAVDPETEVLPLIGSQEGTAHLPLAVLNPGDFALLLDPGYPSHAGGVYLAG--------- 137
Query: 180 EKYGKIEYMRCTAENGFFPDLSTV-----ARTDIIFFCSPNNPTGAAATREQLTRLVQFA 234
G+I M AEN F P + + A+ ++ P+NPT A A V F
Sbjct: 138 ---GQIYPMPLRAENDFLPVFADIPTEVLAQARLMVLSYPHNPTTAIAPLSFFQEAVAFC 194
Query: 235 KDNGSIIVYDSAYA--LYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIP 292
+ + ++V+D Y ++ + P SI + K V+IE + SK G R+G+ +
Sbjct: 195 QQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGGFRIGFAIGN 254
Query: 293 KELLFS-DGFPVAKDFNRIVCTCFNGASNISQAGGLACL-SPEGFKAVHEVIGFYKENTD 350
+L+ + DFN+ + G N G +A L P+ V + + +++ D
Sbjct: 255 AQLIQALRQVKAVVDFNQ-----YRGILN----GAIAALTGPQAT--VQQTVQIFRQRRD 303
Query: 351 IIVETFNSLGFKVYGGKNAPYVWVQFP---GRSSWDVFSEILEKTHVVTTPGSGFGPGGE 407
+ + +G+ V + YVW + P +S + ++++ +T V +PGSGFG GE
Sbjct: 304 AFINALHQIGWPVPLPEATMYVWAKLPEPWQGNSVEFCTQLVAQTGVAASPGSGFGKSGE 363
Query: 408 GFIRVSAFGHRGNVLE 423
G++R A H ++LE
Sbjct: 364 GYVRF-ALVHDPDILE 378
|
Length = 388 |
| >gnl|CDD|181268 PRK08175, PRK08175, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 2e-26
Identities = 101/405 (24%), Positives = 173/405 (42%), Gaps = 43/405 (10%)
Query: 44 YLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA 103
Y+F A K A + D +I +G+ P P I L + ++ + GY
Sbjct: 12 YVFNITAELKMAARRRGED--IIDFSMGNPDGPTPPHIVEKLCE----VAQRPDTHGYST 65
Query: 104 EQGEKPLRAAIASTFYKDLGIE---EGDIFVSDGAKCDISRLQI-VFGSNVTMAVQDPSY 159
+G LR AI+ + ++ E + V+ G+K ++ L + T+ V +PSY
Sbjct: 66 SRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAHLMLATLDHGDTVLVPNPSY 125
Query: 160 PAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDI-----IFFCSP 214
P ++ +VI G ++ + FF +L R + P
Sbjct: 126 PIHIYGAVIAG------------AQVRSVPLVEGVDFFNELERAIRESYPKPKMMILGFP 173
Query: 215 NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDD-NPRSIFEIPGAKEVAIETS 273
+NPT E ++V AK ++V+D AYA + D SI ++PGAK+VA+E
Sbjct: 174 SNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFF 233
Query: 274 SFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPE 333
+ SK G R+G+ V EL+ + RI G Q +A L E
Sbjct: 234 TLSKSYNMAGWRIGFMVGNPELVSA--------LARIKSYHDYGTFTPLQVAAIAAL--E 283
Query: 334 GFK-AVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGR----SSWDVFSEI 388
G + V ++ YK D++V+ + G+ V K + YVW + P S + ++
Sbjct: 284 GDQQCVRDIAEQYKRRRDVLVKGLHEAGWMVEMPKASMYVWAKIPEPYAAMGSLEFAKKL 343
Query: 389 LEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433
L + V +PG GFG G+ +R + +R + +A + K +++
Sbjct: 344 LNEAKVCVSPGIGFGDYGDTHVRFALIENRDRIRQAIRGIKAMFR 388
|
Length = 395 |
| >gnl|CDD|163313 TIGR03537, DapC, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 5e-26
Identities = 100/371 (26%), Positives = 147/371 (39%), Gaps = 48/371 (12%)
Query: 69 GIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIE--- 125
G GD EP P I AL + S Y + G K LR AI+ F + G++
Sbjct: 6 GTGDPKEPTPPFIRKAL------IDAVPEVSQYPSALGTKALREAISGWFERRFGVKLDP 59
Query: 126 EGDIFVSDGAKCDISRLQIVFGSNV----TMAVQDPSYPAYVDSSVIMGQTGEFQKDAEK 181
+ + S G+K I +VF + P YP Y ++ G
Sbjct: 60 DAQVLPSAGSKEAIFHFPLVFIDPEEDRRRVIFGTPGYPVYERGALFAG----------- 108
Query: 182 YGKIEYMRCTAENGFFPDLSTVA-----RTDIIFFCSPNNPTGAAATREQLTRLVQFAKD 236
G+ ++ E+GF L V T I++ P+NPTGA A R L + ++
Sbjct: 109 -GEPTAVKLKKEDGFLLRLEKVEKSILEETKIVWINYPHNPTGATAPRSYLKETIAMCRE 167
Query: 237 NGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELL 296
+G I+ D Y + P S E+ E + S SK +G TG R G
Sbjct: 168 HGIILCSDECYTEIYFGEPPHSALEV--GIENVLAFHSLSKRSGMTGYRSG--------- 216
Query: 297 FSDGFPVAKDFNRIVCTCFNGAS-NISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVET 355
F G F R + F AS + QA A S + V E +K D+ +E
Sbjct: 217 FVAGDEKLISFLRKLRANFGVASPDFVQAAAKAAWSDD--NHVLERRKIFKRKRDLFIEF 274
Query: 356 FNSLGFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF 415
FN +G + Y+WV+ P ++ L + +V PG FG G EG++RV+
Sbjct: 275 FNKVGLEYLYPDATFYLWVKVPSGIDAKDYALRLLENGIVVAPGENFGSGEEGYVRVALV 334
Query: 416 GHRGNVLEACK 426
LE C+
Sbjct: 335 ----PTLEECE 341
|
The four sequences which make up the seed for this model are not closely related, although they are all members of the pfam00155 family of aminotransferases and are more closely related to each other than to anything else. Additionally, all of them are found in the vicinity of genes involved in the biosynthesis of lysine via the diaminopimelate pathway (GenProp0125), although this amount to a separation of 12 genes in the case of Sulfurihydrogenibium azorense Az-Fu1. None of these genomes contain another strong candidate for this role in the pathway. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. Length = 350 |
| >gnl|CDD|236316 PRK08636, PRK08636, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 5e-25
Identities = 101/393 (25%), Positives = 173/393 (44%), Gaps = 52/393 (13%)
Query: 44 YLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA 103
Y+F E+ K A D +I +G+ P P+ I L + + T GY
Sbjct: 16 YVFAEVNELKMAARRAGED--IIDFSMGNPDGPTPQHIIDKLCESAQKPKTH----GYSV 69
Query: 104 EQGEKPLRAAIASTFYKDLGIE---EGDIFVSDGAKCDISRL--QIVFGSNVTMAVQDPS 158
+G LR AI + + + ++ E ++ + G+K L I +V + V DP+
Sbjct: 70 SKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAITNPGDVAI-VPDPA 128
Query: 159 YPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDI-----IFFCS 213
YP + + ++ G G K +Y E E+ FF +L R +
Sbjct: 129 YPIHSQAFILAG--GNVHKMPLEYN--EDFELD-EDQFFENLEKALRESSPKPKYVVVNF 183
Query: 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDD--NPRSIFEIPGAKEVAIE 271
P+NPT A + RLV AK I+ D AYA D P SI E+ GAK+VA+E
Sbjct: 184 PHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTP-SILEVEGAKDVAVE 242
Query: 272 TSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRI-------VCTCFNGASNISQA 324
+ + SK G R+G+ V K+L+ + +I + T A+ I+
Sbjct: 243 SYTLSKSYNMAGWRVGFVVGNKKLVGA--------LKKIKSWLDYGMFTPIQVAATIALD 294
Query: 325 GGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFP----GRS 380
G +C V E+ Y++ D+++E+F + G+++ + + +VW + P
Sbjct: 295 GDQSC--------VEEIRETYRKRRDVLIESFANAGWELQKPRASMFVWAKIPEPARHLG 346
Query: 381 SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS 413
S + ++L + V +PG GFG G+ ++R++
Sbjct: 347 SLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIA 379
|
Length = 403 |
| >gnl|CDD|180537 PRK06348, PRK06348, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 1e-24
Identities = 89/369 (24%), Positives = 158/369 (42%), Gaps = 43/369 (11%)
Query: 59 KYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTF 118
K+PD +I L +GD P++IT + ++G++ Y G+ L I +
Sbjct: 27 KFPD--IIDLSLGD-----PDLITDESIINAAFEDAKKGHTRYTDSGGDVELIEEIIK-Y 78
Query: 119 YK---DLGIEEGDIFVSDGAKCD--ISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTG 173
Y DL + +I + GA C LQ + + + +P + Y D ++G
Sbjct: 79 YSKNYDLSFKRNEIMATVGA-CHGMYLALQSILDPGDEVIIHEPYFTPYKDQIEMVG--- 134
Query: 174 EFQKDAEKYGKIEYMRCTAENGFFPDLSTV-----ARTDIIFFCSPNNPTGAAATREQLT 228
GK + E+GF ++ + ++T I SPNNPTGA ++E L
Sbjct: 135 ---------GKPIILETYEEDGFQINVKKLEALITSKTKAIILNSPNNPTGAVFSKETLE 185
Query: 229 RLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGW 288
+ + A + I+ D Y + ++ + + G E I SFSK TG R+G+
Sbjct: 186 EIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTITFGSFSKDFAMTGWRIGY 245
Query: 289 TVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKEN 348
+ P ++ AK N +C A ISQ + L V + +++
Sbjct: 246 VIAPDYII-----ETAKIINEGICF---SAPTISQRAAIYALKHRD-TIVPLIKEEFQKR 296
Query: 349 TDIIVETFNSLGF-KVYGGKNAPYVWV--QFPGRSSWDVFSEILEKTHVVTTPGSGFGPG 405
+ + S+ ++ K + Y ++ + G SS + ++L++ HV+ PG FG
Sbjct: 297 LEYAYKRIESIPNLSLHPPKGSIYAFINIKKTGLSSVEFCEKLLKEAHVLVIPGKAFGES 356
Query: 406 GEGFIRVSA 414
GEG+IR++
Sbjct: 357 GEGYIRLAC 365
|
Length = 384 |
| >gnl|CDD|236075 PRK07683, PRK07683, aminotransferase A; Validated | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 9e-24
Identities = 97/371 (26%), Positives = 149/371 (40%), Gaps = 50/371 (13%)
Query: 59 KYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTF 118
Y + +ISL IG P P + A AKR+ E Y+ Y G LR A +
Sbjct: 26 NYDN--LISLTIGQPDFPTPSHVKEA-AKRAIT----ENYTSYTHNAGLLELRKAACNFV 78
Query: 119 YKDLGIE---EGDIFVSDGAK--CDIS-RLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQT 172
+ E +I V+ GA DI+ R + G+ V + P YP Y I+
Sbjct: 79 KDKYDLHYSPESEIIVTIGASEAIDIAFRTILEPGTEVILPA--PIYPGY---EPIIRLC 133
Query: 173 GEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA-----RTDIIFFCSPNNPTGAAATREQL 227
G K ++ T GF + +T + P+NPTG ++E+L
Sbjct: 134 G---------AKPVFID-TRSTGFRLTAEALENAITEKTRCVVLPYPSNPTGVTLSKEEL 183
Query: 228 TRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLG 287
+ KD ++ D Y+ + + SI P +E I + SK TG R+G
Sbjct: 184 QDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTGWRIG 243
Query: 288 WTVIPKELLFSDGFPVAKDFNRI---VCTCFNGASNISQAGGLACLSPEGFKAVHEVIGF 344
+ P L AK ++ TC AS+ISQ L L+ G +
Sbjct: 244 FLFAPSYL--------AKHILKVHQYNVTC---ASSISQYAALEALT-AGKDDAKMMRHQ 291
Query: 345 YKENTDIIVETFNSLGFKVYGGKNAPYVWVQFP--GRSSWDVFSEILEKTHVVTTPGSGF 402
YK+ D + S+G V A Y++ SS+D +++E+ + PGS F
Sbjct: 292 YKKRRDYVYNRLISMGLDVEKPTGAFYLFPSIGHFTMSSFDFALDLVEEAGLAVVPGSAF 351
Query: 403 GPGGEGFIRVS 413
GEG++R+S
Sbjct: 352 SEYGEGYVRLS 362
|
Length = 387 |
| >gnl|CDD|180404 PRK06108, PRK06108, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 4e-23
Identities = 94/362 (25%), Positives = 150/362 (41%), Gaps = 43/362 (11%)
Query: 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGI 124
V+ L G++ P P+ I A A + +G + Y G LR A+A + G+
Sbjct: 26 VLPLWFGESDLPTPDFIRDAAAA-----ALADGETFYTHNLGIPELREALARYVSRLHGV 80
Query: 125 EEG--DIFV-SDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMG---QTGEFQKD 178
I V S G + + Q + G + P +P V + I+G
Sbjct: 81 ATPPERIAVTSSGVQALMLAAQALVGPGDEVVAVTPLWPNLVAAPKILGARVVCVPLD-- 138
Query: 179 AEKYGKIEYMRCTAENGFFPDLSTVA-----RTDIIFFCSPNNPTGAAATREQLTRLVQF 233
+G G+ DL + RT +F SPNNPTG A+R+ L ++
Sbjct: 139 ---FG---------GGGWTLDLDRLLAAITPRTRALFINSPNNPTGWTASRDDLRAILAH 186
Query: 234 AKDNGSIIVYDSAYALYISDDNPR--SIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVI 291
+ +G IV D Y R S +I + I +SFSK TG RLGW V
Sbjct: 187 CRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVA 246
Query: 292 PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDI 351
P L + +++ + + Q +A L EG V E++ + + D
Sbjct: 247 PPAL--------GQVLEKLIEYNTSCVAQFVQRAAVAALD-EGEDFVAELVARLRRSRDH 297
Query: 352 IVETFNSL-GFKVYGGKNAPYVWVQFPGRS-SWDVFSEILEKTHVVTTPGSGFGPGGEGF 409
+V+ +L G +V A Y + + PG + S + ++++ + PG+ FGPGGEGF
Sbjct: 298 LVDALRALPGVEVAKPDGAMYAFFRIPGVTDSLALAKRLVDEAGLGLAPGTAFGPGGEGF 357
Query: 410 IR 411
+R
Sbjct: 358 LR 359
|
Length = 382 |
| >gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 3e-22
Identities = 70/312 (22%), Positives = 131/312 (41%), Gaps = 47/312 (15%)
Query: 110 LRAAIASTFYKDLGIEEGDIFVSDGAKCD--ISRL-QIVFGSNVTMAVQDPSYPAYVDSS 166
LRAA+A +Y ++ ++ V +G+ D I L + T+ + +P++ Y ++
Sbjct: 62 LRAALAE-YYG--VVDPENVLVGNGS--DELIELLVRAFVEPGDTVLIPEPTFSMYEIAA 116
Query: 167 VIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA-----RTDIIFFCSPNNPTGAA 221
+ G E K F DL + +T ++F C+PNNPTG
Sbjct: 117 QLAG--AEVVK-------------VPLKEFRLDLDAILAAIRDKTKLVFLCNPNNPTGTL 161
Query: 222 ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGF 281
RE+L L++ A G ++V D AY + + S+ + + + +FSK G
Sbjct: 162 LPREELRALLE-ALPEGGLVVIDEAYIEFSPES---SLELLKYPPNLIV-LRTFSKAFGL 216
Query: 282 TGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEV 341
G+R+G+ + EL N++ FN S+ + A +A L + + E
Sbjct: 217 AGLRVGYAIANPEL--------IAALNKVR-PPFN-VSSPALAAAIAALRDADY--LEES 264
Query: 342 IGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSG 401
+ +E + + +LG A +V V+ P + + +L+K +V S
Sbjct: 265 VERIREERERLYAALKALGLFGVFPSQANFVLVRVPDAEAAALAEALLKKGILVRDCSS- 323
Query: 402 FGPGGEGFIRVS 413
G++R++
Sbjct: 324 -VGLLPGYLRIT 334
|
Length = 356 |
| >gnl|CDD|181026 PRK07550, PRK07550, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 4e-22
Identities = 87/386 (22%), Positives = 138/386 (35%), Gaps = 71/386 (18%)
Query: 75 EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLG--IEEGDIFVS 132
P P + ALA + YG +G LR A A+ + + G I + ++
Sbjct: 41 YPPPPELLRALA----EAAADPAAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHIT 96
Query: 133 DGAK----CDISRLQIVFGSNVTMAVQDPSY---PAYVDSSVIMGQTGEFQKDAEKYGKI 185
G + L G+ + + P Y ++D I
Sbjct: 97 SGCNQAFWAAMVTLA---GAGDEVILPLPWYFNHKMWLDMLGIR---------------P 138
Query: 186 EYMRCTAENGFFPDLSTVA-----RTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSI 240
Y+ C G PD + RT I +PNNPTG E L L A+ +G
Sbjct: 139 VYLPCDEGPGLLPDPAAAEALITPRTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIA 198
Query: 241 IVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSD 299
++ D Y + S P +F P + + SFSK TG R+G V +
Sbjct: 199 LILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVVASPARIAE- 257
Query: 300 GFPVAK--DFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKEN-------TD 350
+ K D +C A I Q L + N D
Sbjct: 258 ---IEKFMD-TVAIC-----APRIGQIAVAWGLPNLA--------DWRAGNRAEIARRRD 300
Query: 351 IIVETFNSL-GFKVYGGKNAPYVWVQ--FPGRSSWDVFSEILEKTHVVTTPGSGFGPGGE 407
F L G+++ A + +V+ FP R S +V + ++ ++ PG+ FGPG E
Sbjct: 301 AFRAVFARLPGWEL-LASGAYFAYVRHPFPDRPSREVARRLAKEAGILCLPGTMFGPGQE 359
Query: 408 GFIRVSAFGH--RGNVLEACKRFKHL 431
G++R+ AF + + E +R +
Sbjct: 360 GYLRL-AFANADVAGIGELVERLRAF 384
|
Length = 386 |
| >gnl|CDD|234249 TIGR03538, DapC_gpp, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 1e-21
Identities = 116/435 (26%), Positives = 168/435 (38%), Gaps = 78/435 (17%)
Query: 34 NGNLGKLQAGYLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALS 93
N NL +LQ Y F ++A A + I+L IG+ P P + AL + + LS
Sbjct: 1 NPNLSRLQP-YPFEKLAALLAG-VTPPASKPPIALSIGEPKHPTPAFVLEALRENLHGLS 58
Query: 94 TQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQI--VFGS--- 148
T Y +G LR AIA + + G D R + V G+
Sbjct: 59 T------YPTTKGLPELRQAIARWLERRFDLPTG---------VDPER-HVLPVNGTREA 102
Query: 149 --NVTMAVQDPSYPAYVDSSVIMGQTGE---FQKDAEKYGKIEYMRCTAENGFFPDLSTV 203
AV +P V Q E AE Y ++ CTAENGF PD V
Sbjct: 103 LFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAGAEPY----FLNCTAENGFLPDFDAV 158
Query: 204 -----ARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYA-LYISDDNPR 257
R ++F CSP NPTGA + + L +L++ A G II D Y+ LY + NP
Sbjct: 159 PESVWRRCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPP 218
Query: 258 SIFEIPGAKEVAIET-----------SSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKD 306
G + A + S SK + G+R G+ E+L K
Sbjct: 219 -----AGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLRSGFVAGDAEIL--------KA 265
Query: 307 FNRIVCTCFNGASNIS-QAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYG 365
F R T A I Q +A + E + V E Y+E ++E + +
Sbjct: 266 FLRYR-TYHGCAMPIPTQLASIAAWNDE--QHVRENRALYREKFAAVLEILGQV-LDLEL 321
Query: 366 GKNAPYVWVQFPGRSSWDVFSEIL-EKTHVVTTPGS-------GFGPGGEGFIRVSAFGH 417
Y+W + PG + F+ L E+ +V PG G P GEG +R++
Sbjct: 322 PDAGFYLWPKVPGDD--EAFARALYEEENVTVLPGRFLAREAEGVNP-GEGRVRIALVAP 378
Query: 418 RGNVLEACKRFKHLY 432
+EA +R +
Sbjct: 379 LEECVEAAERIRSFI 393
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 393 |
| >gnl|CDD|224089 COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 2e-19
Identities = 92/421 (21%), Positives = 145/421 (34%), Gaps = 61/421 (14%)
Query: 26 AYKTKVSRNGNLGKLQAGYLFPEIARRKAAHM----LKYPDAEVISLGIGDT-TEPIPEV 80
AY+ +R + + R + L D VI G P
Sbjct: 48 AYEELEARGYIESRPGSAPPSGRPVRLELLKPSDPELLEDDPSVIDFAGGLPDPSLFPLE 107
Query: 81 ITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGI--EEGDIFVSDGA--- 135
R YG G LR AIA+ GI E I ++ GA
Sbjct: 108 ALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQA 167
Query: 136 --KCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTA- 192
L+++ T+ V+DP+YP + + G R
Sbjct: 168 LDLL----LRLLLDPGDTVLVEDPTYPG---ALQALEALG--------------ARVIPV 206
Query: 193 ---ENGFFPD-LSTVARTDII--FFCSPN--NPTGAAATREQLTRLVQFAKDNGSIIVYD 244
E+G P+ L + +P NPTG + E+ L+ A+ +I+ D
Sbjct: 207 PVDEDGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIED 266
Query: 245 SAYA-LYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPV 303
Y L P + + V I SFSK G+RLG+ V P EL
Sbjct: 267 DYYGELRYDGPPPPPLKALDAPGRV-IYLGSFSKTL-APGLRLGYVVAPPEL-------- 316
Query: 304 AKDFNRIVCTCFNGASNISQAGGLACLSPEGF-KAVHEVIGFYKENTDIIVE---TFNSL 359
+ R+ G S++SQA A L + + + + Y D ++E +
Sbjct: 317 IEKLLRLKQAADLGPSSLSQAALAAFLLSGHYDRHLRRLRREYARRRDALLEALAEYLPE 376
Query: 360 GFKVYGGKNAPYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEG--FIRVSAFG 416
+ ++W++ P G + ++ + LEK VVT GS F G+ +R+S F
Sbjct: 377 LATWTRPEGGLFLWLELPEGIDARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLS-FS 435
Query: 417 H 417
Sbjct: 436 S 436
|
Length = 459 |
| >gnl|CDD|181595 PRK08960, PRK08960, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 3e-19
Identities = 97/370 (26%), Positives = 140/370 (37%), Gaps = 77/370 (20%)
Query: 64 EVISLGIGD----TTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFY 119
+VI L IG+ T EPI +ALA G++ Y A +G LR AIA FY
Sbjct: 33 DVIHLEIGEPDFTTAEPIVAAGQAALA---------AGHTRYTAARGLPALREAIAG-FY 82
Query: 120 KD---LGIEEGDIFVSDGAKCDI---SRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTG 173
+ ++ I V+ G + S L + G + +A DP YP
Sbjct: 83 AQRYGVDVDPERILVTPGGSGALLLASSLLVDPGKHWLLA--DPGYPCN----------R 130
Query: 174 EFQKDAEKYGKIEYMRCTAENGFFPDLSTV-----ARTDIIFFCSPNNPTGAAATREQLT 228
F + E G + + ++ + + V A T SP NPTG +R++L
Sbjct: 131 HFLRLVE--GAAQLVPVGPDSRYQLTPALVERHWNADTVGALVASPANPTGTLLSRDELA 188
Query: 229 RLVQFAKDNGSIIVYDSAY-----------ALYISDDNPRSIFEIPGAKEVAIETSSFSK 277
L Q + G +V D Y L + DD F + +SFSK
Sbjct: 189 ALSQALRARGGHLVVDEIYHGLTYGVDAASVLEVDDD----AFVL----------NSFSK 234
Query: 278 YAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKA 337
Y G TG RLGW V P + ++ + AS +Q LAC PE
Sbjct: 235 YFGMTGWRLGWLVAPPAA--------VPELEKLAQNLYISASTPAQHAALACFEPETLAI 286
Query: 338 VHEVIGFYKENTDIIVETFNSLGFKV-YGGKNAPYVWVQFPGRSSWDVFS---EILEKTH 393
+ + D ++ LGF + + A Y++ D F+ LE H
Sbjct: 287 LEARRAEFARRRDFLLPALRELGFGIAVEPQGAFYLYADI-SAFGGDAFAFCRHFLETEH 345
Query: 394 VVTTPGSGFG 403
V TPG FG
Sbjct: 346 VAFTPGLDFG 355
|
Length = 387 |
| >gnl|CDD|233290 TIGR01141, hisC, histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 7e-19
Identities = 69/321 (21%), Positives = 131/321 (40%), Gaps = 65/321 (20%)
Query: 110 LRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQIVFG-SNVTMAVQDPSYPAYVDSSVI 168
L+ A+A G++ I + +G+ I L F + V P+Y Y S+ I
Sbjct: 59 LKQALA----DYYGVDPEQILLGNGSDEIIELLIRAFLEPGDAVLVPPPTYSMYEISAKI 114
Query: 169 MGQTGEFQKDAEKYGKIEYMRC-TAENGF--FPDLSTVA--RTDIIFFCSPNNPTGAAAT 223
G E ++ E+G D+ + ++F CSPNNPTG +
Sbjct: 115 HG--------------AEVVKVPLDEDGQLDLEDILVAIDDKPKLVFLCSPNNPTGNLLS 160
Query: 224 REQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKE---VAIETSSFSKYAG 280
R + +++ ++ ++V D AY + + + +P E + + + SK G
Sbjct: 161 RSDIEAVLERTPEDA-LVVVDEAYGEFSGEPST-----LPLLAEYPNLIV-LRTLSKAFG 213
Query: 281 FTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHE 340
G+R+G+ + E + N+ V FN S ++QA +A L +
Sbjct: 214 LAGLRIGYAIANAE--------IIDALNK-VRAPFN-LSRLAQAAAIAALRDD------- 256
Query: 341 VIGFYKENTDIIVET----FNSL----GFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKT 392
F ++ + I ++ L G +VY A +V ++FP + +F +LEK
Sbjct: 257 --DFIEKTVEEINAERERLYDGLKKLPGLEVYPSD-ANFVLIRFPRDAD-ALFEALLEKG 312
Query: 393 HVVTTPGSGFGPGGEGFIRVS 413
++ + + PG +R++
Sbjct: 313 -IIVRDLNSY-PGLPNCLRIT 331
|
Alternate names: histidinol-phosphate transaminase; imidazole acetol-phosphate transaminase Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme [Amino acid biosynthesis, Histidine family]. Length = 346 |
| >gnl|CDD|235985 PRK07309, PRK07309, aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 5e-18
Identities = 93/382 (24%), Positives = 150/382 (39%), Gaps = 45/382 (11%)
Query: 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGI 124
++ L +G+ P+ + A AKR+ S Y G LR A A + +
Sbjct: 32 ILKLTLGEPDFTTPDHVKEA-AKRA----IDANQSHYTGMAGLLELRQAAADFVKEKYNL 86
Query: 125 E---EGDIFVSDGAKCDIS-RLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAE 180
+ E +I V+ GA +S L + + + P+YP Y ++G
Sbjct: 87 DYAPENEILVTIGATEALSASLTAILEPGDKVLLPAPAYPGYEPIVNLVG---------- 136
Query: 181 KYGKIEYMRCTAENGFF--PDLSTVARTD------IIFFCSPNNPTGAAATREQLTRLVQ 232
+I + T EN F P++ A + + P NPTG +REQ+ L
Sbjct: 137 --AEIVEID-TTENDFVLTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALAD 193
Query: 233 FAKDNGSIIVYDSAYA-LYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVI 291
K ++ D Y+ L + + SI E + I + SK TG R+G
Sbjct: 194 VLKKYDIFVISDEVYSELTYTGEPHVSIAEY--LPDQTILINGLSKSHAMTGWRIGLIFA 251
Query: 292 PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDI 351
P E + K +V A+ ++Q + L+ G + Y + D
Sbjct: 252 PAEFTAQ----LIKSHQYLV----TAATTMAQFAAVEALT-NGKDDALPMKKEYIKRRDY 302
Query: 352 IVETFNSLGFKVYGGKNAPYVWVQFP---GRSSWDVFSEILEKTHVVTTPGSGFGPGGEG 408
I+E LGFK+ A Y++ + P + S+ + K V PG+ FGP GEG
Sbjct: 303 IIEKMTDLGFKIIKPDGAFYIFAKIPAGYNQDSFKFLQDFARKKAVAFIPGAAFGPYGEG 362
Query: 409 FIRVSAFGHRGNVLEACKRFKH 430
++R+S + EA KR K
Sbjct: 363 YVRLSYAASMETIKEAMKRLKE 384
|
Length = 391 |
| >gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 4e-17
Identities = 105/403 (26%), Positives = 154/403 (38%), Gaps = 85/403 (21%)
Query: 45 LFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAE 104
+F E AR KA +Y V +G+ + P P + AL R A G GY
Sbjct: 19 MFEEGARLKA----EYGADNVFDFSLGNPSVPPPAAVKEAL--RELAEEEDPGLHGYMPN 72
Query: 105 QGEKPLRAAIASTFYKDLGIE--EGDIFVSDGAKCDISRLQIVFGSNVTM-AVQDPS--- 158
G +R AIA + + G I ++ GA + NV + A+ +P
Sbjct: 73 AGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGAL---------NVALKAILNPGDEV 123
Query: 159 ---------YPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA----- 204
Y YVD+ G GK+ + T + F PDL +
Sbjct: 124 IVFAPYFVEYRFYVDN------HG---------GKLVVVP-TDTDTFQPDLDALEAAITP 167
Query: 205 RTDIIFFCSPNNPTGAAATREQLTRLVQF----AKDNGSII--VYDSAYALYISDDN--P 256
+T + SPNNPTG + E L L +K+ G I + D Y + D P
Sbjct: 168 KTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVP 227
Query: 257 RSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKEL----LFSDGFPVAKDFNRIVC 312
I + +I SFSK G R+G+ + E+ A NRI
Sbjct: 228 ----YIFKYYDNSIVVYSFSKSLSLPGERIGYIAVNPEMEDADDLVAALVFA---NRI-- 278
Query: 313 TCFNGASNISQAGGLACLSPEGFKAVHEV-IGFYKENTDIIVETFNSLGFKVYGGKNAPY 371
F A + Q CL V + YK N D++ + LGF+ + A Y
Sbjct: 279 LGFVNAPALMQRVVAKCLD-------ATVDVSIYKRNRDLLYDGLTELGFECVKPQGAFY 331
Query: 372 VWVQFPGRSSWDV-FSEILEKTHVVTTPGSGFGPGGEGFIRVS 413
++ + P DV F E +K +++ PGSGF G G+ R+S
Sbjct: 332 LFPKSPEED--DVAFCEKAKKHNLLLVPGSGF--GCPGYFRLS 370
|
Length = 394 |
| >gnl|CDD|132578 TIGR03539, DapC_actino, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 5e-17
Identities = 87/387 (22%), Positives = 146/387 (37%), Gaps = 52/387 (13%)
Query: 50 ARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKP 109
+ KAA +PD ++ L +G +P+P +I +ALA + A GY G
Sbjct: 12 YKAKAA---SHPDG-IVDLSVGTPVDPVPPLIRAALAAAADA-------PGYPQTWGTPE 60
Query: 110 LRAAIASTF---YKDLGIEEGDIFVSDGAKCDISRL--QIVFGSNVTMAVQDPSYPAYVD 164
LR AI G++ + G K ++ L + G T+ + + +YP Y
Sbjct: 61 LREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLPTLLGLGPGDTVVIPELAYPTYEV 120
Query: 165 SSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATR 224
+++ G T P D+I+ SP NPTG +
Sbjct: 121 GALLAG-------------------ATPVAADDPTELDPVGPDLIWLNSPGNPTGRVLSV 161
Query: 225 EQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIP----GAKEVAIETSSFSKYAG 280
++L +V +A++ G+++ D Y + P SI + P G + S SK +
Sbjct: 162 DELRAIVAWARERGAVVASDECYLELGWEGRPVSILD-PRVCGGDHTGLLAVHSLSKRSN 220
Query: 281 FTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHE 340
G R G+ L+ ++ V K +V QA +A L +G V E
Sbjct: 221 LAGYRAGFVAGDPALV-AELLTVRKHAGLMV-------PAPVQAAMVAALGDDGH--VAE 270
Query: 341 VIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGS 400
Y + GF++ + Y+W G +WD + E ++ PG
Sbjct: 271 QKARYAARRAQLKPALEKAGFRIDHSEAGLYLWAT-RGEDAWDTVDRLAELG-ILVAPGD 328
Query: 401 GFGPGGEGFIRVSAFGHRGNVLEACKR 427
+GP G +RV+ + A R
Sbjct: 329 FYGPAGSQHVRVALTATDERIAAAVAR 355
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 357 |
| >gnl|CDD|181402 PRK08363, PRK08363, alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 3e-16
Identities = 98/384 (25%), Positives = 159/384 (41%), Gaps = 57/384 (14%)
Query: 54 AAHMLKYPDAEVISLGIGDTT----EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKP 109
A L+ +VI L IGD +P + K +Y + +EG++ YG +G
Sbjct: 21 PARELEKKGIKVIRLNIGDPVKFDFQPPEHM------KEAYCRAIKEGHNYYGPSEGLPE 74
Query: 110 LRAAIASTFYKDLG--IEEGDIFVSDGAKCDISRLQIVFGSNVT----MAVQDPSYPAYV 163
LR AI + G I D+ V+ LQ++FG+ + + + PSYP Y
Sbjct: 75 LREAIVKREKRKNGVDITPDDVRVTAAVT---EALQLIFGALLDPGDEILIPGPSYPPYT 131
Query: 164 DSSVIMGQTGEFQKDAEKYG--KIEYMRCTAENGFFPDLSTV-----ARTDIIFFCSPNN 216
+ YG +EY R E G+ PD+ + +T I +PNN
Sbjct: 132 GL-------------VKFYGGVPVEY-RTIEEEGWQPDIDDIRKKITEKTKAIAVINPNN 177
Query: 217 PTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEV-AIETSSF 275
PTGA ++ L ++ A ++ ++ D Y L + S + K+V I +
Sbjct: 178 PTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSL--TKDVPVIVMNGL 235
Query: 276 SKYAGFTGVRLGWT--VIPKELLFSDGFPVAKDFNRI-VCTCFNGASNISQAGGLACLSP 332
SK TG RLG+ V P+ L + K RI +C + +Q +A L+
Sbjct: 236 SKVYFATGWRLGYIYFVDPEGKLAEVREAIDK-LARIRLCP-----NTPAQFAAIAGLT- 288
Query: 333 EGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAPYVWVQF---PGRSSWDVFSEI 388
+ E + KE D I + N + G + A Y++ + P + + ++
Sbjct: 289 GPMDYLEEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPRIEEGPWKDDKEFVLDV 348
Query: 389 LEKTHVVTTPGSGFGPGGEGFIRV 412
L + HV+ GSGFG G G R+
Sbjct: 349 LHEAHVLFVHGSGFGEYGAGHFRL 372
|
Length = 398 |
| >gnl|CDD|236393 PRK09147, PRK09147, succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 5e-16
Identities = 79/285 (27%), Positives = 105/285 (36%), Gaps = 62/285 (21%)
Query: 34 NGNLGKLQAGYLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALS 93
N L +LQ Y F E R A + D ISL IG+ P P I ALA +
Sbjct: 2 NPRLDRLQP-YPF-EKLRALFAGVTPPADLPPISLSIGEPKHPTPAFIKDALA------A 53
Query: 94 TQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQI--VFGSN-- 149
+G + Y G LR AIA+ + G+ D + Q+ V GS
Sbjct: 54 NLDGLASYPTTAGLPALREAIAAWLERRYGL----------PALDPAT-QVLPVNGSREA 102
Query: 150 ---VTMAVQDPSYPAYVDSSVIMG----QTGE---FQKDAEKYGKIEYMRCTAENGFFPD 199
V D P + V+ Q E AE Y ++ C N F PD
Sbjct: 103 LFAFAQTVIDRDGPGPL---VVCPNPFYQIYEGAALLAGAEPY----FLNCDPANNFAPD 155
Query: 200 LSTV-----ARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYA-LYISD 253
V ART ++F CSP NPTGA + +L + G +I D Y+ +Y +
Sbjct: 156 FDAVPAEVWARTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDE 215
Query: 254 DNPRSIFEIPGAKEVAIET-----------SSFSKYAGFTGVRLG 287
P G E A E S SK + G+R G
Sbjct: 216 AAPP-----LGLLEAAAELGRDDFKRLVVFHSLSKRSNVPGLRSG 255
|
Length = 396 |
| >gnl|CDD|179950 PRK05166, PRK05166, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 1e-15
Identities = 83/313 (26%), Positives = 140/313 (44%), Gaps = 46/313 (14%)
Query: 110 LRAAIASTFYKDLGIEEGDIFVSDGAKCDISRL-QIVFGSNVTMAVQDPSYPAYVDSSVI 168
LR AIA+ G+ I + +G++ I+ + + V + PS+P + D +
Sbjct: 76 LREAIAART----GVPADRIILGNGSEDLIAVICRAVLRPGDRVVTLYPSFPLHEDYPTM 131
Query: 169 MGQTGEFQKDAEKYGKIEYMRCTAENGFFPD--LSTVART-DIIFFCSPNNPTGAAATRE 225
MG ++E + T + GF D + VAR ++ F +P+NP G+ T +
Sbjct: 132 MG------------ARVERVTVTPDLGFDLDALCAAVARAPRMLMFSNPSNPVGSWLTAD 179
Query: 226 QLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKE---VAIETSSFSKYAGFT 282
QL R++ A ++IV D AYA Y + D+ S + A+ + + T FSK G
Sbjct: 180 QLARVLD-ATPPETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRT--FSKAYGLA 236
Query: 283 GVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVI 342
G+R+G+ ++ SD V +R V T FN + +QA LA L E + + +
Sbjct: 237 GLRVGYGLV------SDPELVGL-LDR-VRTPFN-VNGAAQAAALAALDDEEH--LAKGV 285
Query: 343 GFYKENTDIIVETFNSLGFKVYGGKNAPYV--WVQFPGRSSWDVFSEILEKTHVVTTPGS 400
+ + + +G+++ AP ++ F R +E L + V+ P
Sbjct: 286 ALALAERERLKKELAEMGYRI-----APSRANFLFFDARRPASAVAEALLRQGVIVKPWK 340
Query: 401 GFGPGGEGFIRVS 413
PG E FIRVS
Sbjct: 341 --QPGFETFIRVS 351
|
Length = 371 |
| >gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 1e-14
Identities = 93/365 (25%), Positives = 132/365 (36%), Gaps = 66/365 (18%)
Query: 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGI 124
V L IG PEV A+ Y Y QG LR A A +YK GI
Sbjct: 32 VYHLNIGQPDIKTPEVFFEAIKN--YDEEVLA----YSHSQGIPELREAFA-KYYKKWGI 84
Query: 125 --EEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDP------SYPAYVDSSVIMGQTGEFQ 176
E +I +++G + MA+ DP P Y + +
Sbjct: 85 DVEPDEILITNGGS---EAILFAM-----MAICDPGDEILVPEPFYAN----------YN 126
Query: 177 KDAEKYG-KIEYMRCTAENGF-FPDLSTV-----ARTDIIFFCSPNNPTGAAATREQLTR 229
A G KI + E GF P + +T I +P NPTG T+E+L
Sbjct: 127 GFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLITPKTKAILISNPGNPTGVVYTKEELEM 186
Query: 230 LVQFAKDNGSIIVYDSAYALYISDDNP-RSIFEIPGAKEVAIETSSFSKYAGFTGVRLGW 288
L + AK + ++ D Y ++ D S + G ++ I S SK G R+G
Sbjct: 187 LAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIG- 245
Query: 289 TVIPKELLFSDGFPVAKDFNRIV---CTCFNGASNISQAGGLACLS-PEGFKAVHEVIGF 344
+I K K+ C + Q G A L PE + EV
Sbjct: 246 CLISKN----------KELIAAAMKLCQARLSPPTLEQIGAAALLDTPESY--FDEVREE 293
Query: 345 YKENTDIIVETFNSL-GFKVYGGKNAPYVWVQFPGRSSWDVFSEILE------KTHVVTT 397
YK+ DI+ E N + G K A Y+ + P + D +L +T V+
Sbjct: 294 YKKRRDILYEELNKIPGVVCEKPKGAFYIIAKLPVDDAEDFAKWLLTDFNYNGET-VMVA 352
Query: 398 PGSGF 402
P SGF
Sbjct: 353 PASGF 357
|
Length = 397 |
| >gnl|CDD|235989 PRK07324, PRK07324, transaminase; Validated | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 1e-14
Identities = 67/259 (25%), Positives = 104/259 (40%), Gaps = 58/259 (22%)
Query: 180 EKYG-KIEYMRCTAENGFFPDLSTVAR-----TDIIFFCSPNNPTGAAATREQLTRLVQF 233
E G +++Y + ENG+ PDL + R T +I + NNPTGA R L +V+
Sbjct: 122 ESLGAEVDYWQLKEENGWLPDLDELRRLVRPNTKLICINNANNPTGALMDRAYLEEIVEI 181
Query: 234 AKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPK 293
A+ + ++ D Y D + SI ++ E I T+S SK G+R+GW +
Sbjct: 182 ARSVDAYVLSDEVYRPLDEDGSTPSIADL---YEKGISTNSMSKTYSLPGIRVGWIAANE 238
Query: 294 ELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIV 353
E++ D +D+ I F+ LA L+ E A+ E N I+
Sbjct: 239 EVI--DILRKYRDYTMICAGVFDDM--------LASLALEHRDAILE------RNRKIVR 282
Query: 354 ETFNSLGFKVYGGKNAPYVWVQFPGRSSW---------------DVFSEI-----LEKTH 393
L WV R S+ D+ SE L++T
Sbjct: 283 TNLAIL-------DE----WVAKEPRVSYVKPKAVSTSFVKLDVDMPSEDFCLKLLKETG 331
Query: 394 VVTTPGSGFGPGGEGFIRV 412
V+ PG+ F EG +R+
Sbjct: 332 VLLVPGNRFDL--EGHVRI 348
|
Length = 373 |
| >gnl|CDD|188123 TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine family aminotransferase | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 2e-14
Identities = 94/420 (22%), Positives = 155/420 (36%), Gaps = 74/420 (17%)
Query: 52 RKAAHMLK---YPDAEVISLGIGDTTE----PIPEVITSALAKRSYALSTQEGYSGYGAE 104
R LK P+ VI L GD + A+ AL + + ++GY
Sbjct: 17 RAIVDNLKVKPNPEKPVIPLSHGDPSVFGNLRTDPEAEEAVKD---ALRSGK-FNGYAPS 72
Query: 105 QGEKPLRAAIASTFYKDLG--IEEGDIFVSDGAKCDISRLQIVF------GSNVTMAVQD 156
G R A+A DL + D+ ++ G C ++I G+N+ V
Sbjct: 73 VGALAAREAVAEYLSSDLPGKLTADDVVLTSG--CS-QAIEICIEALANPGANIL--VPR 127
Query: 157 PSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA-----RTDIIFF 211
P +P Y + G ++ E + DL + +T I
Sbjct: 128 PGFPLYDTRAAFSGL------------EVRLYDLLPEKDWEIDLDGLESLADEKTVAIVV 175
Query: 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAK---EV 268
+P+NP G+ +R+ L ++ + A+ G I+ D Y + D P F IP A V
Sbjct: 176 INPSNPCGSVFSRDHLQKIAEVAEKLGIPIIADEIYGHMVFGDAP---F-IPMASFASIV 231
Query: 269 AIET-SSFSKYAGFTGVRLGWTVI--PKELL---FSDGFPVAKDFNRIVCTCFNGASNIS 322
+ + SK G RLGW +I P + G K+ + + G + I
Sbjct: 232 PVLSLGGISKRWVVPGWRLGWIIIHDPHGIFRDTVLQGL---KNLLQRIL----GPATIV 284
Query: 323 QAGGLACL--SPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAPYVWVQ---- 375
Q L +P+ F I K N ++ E + G + A Y+ V+
Sbjct: 285 QGALPDILENTPQEF--FDGKISVLKSNAELCYEELKDIPGLVCPKPEGAMYLMVKLELE 342
Query: 376 -FPG-RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433
FP + D ++ + V+ PGS F G ++R++ + EAC R K +
Sbjct: 343 LFPEIKDDVDFCEKLAREESVICLPGSAF--GLPNWVRITITVPESMLEEACSRIKEFCE 400
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. Length = 403 |
| >gnl|CDD|224090 COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 4e-14
Identities = 97/426 (22%), Positives = 165/426 (38%), Gaps = 78/426 (18%)
Query: 44 YLFPEIARRKAAHMLK----YPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYS 99
Y F + R + LK + +V+ + + D P P I AL +R G
Sbjct: 2 YDFDTVIERLGTNSLKWDAHPGNEDVLPMWVADMDFPTPPEIIEALRER-----VDHGVF 56
Query: 100 GYGAEQGEKPLRAAIASTFYK---DLGI-EEGDIFVSD---GAKCDISRLQIVFGSNVTM 152
GY G L AAI + ++K I E +FV G I L G V
Sbjct: 57 GY--PYGSDELYAAI-AHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALTKP-GDGV-- 110
Query: 153 AVQDPSYPAYVDSSVIMGQT----------GEFQKDAEKYGKIEYMRCTAENGFFPDLST 202
+Q P YP + ++ + G+ G ++ D + +E + +
Sbjct: 111 VIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDA---LE--KAFVDE-------- 157
Query: 203 VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYA-LYISDDNPRSIFE 261
R + C+P+NPTG T+E+L ++ + +G ++ D +A L +
Sbjct: 158 --RVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFAS 215
Query: 262 I-PGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASN 320
+ + +I +S SK G++ + +I L AK R+ +G S
Sbjct: 216 LSERFADNSITLTSASKTFNLAGLKCAYIIISNREL------RAKFLKRLKRNGLHGPSA 269
Query: 321 ISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRS 380
+ A + +G + E++ + K+N D + + N K+ P V V P +
Sbjct: 270 LGIIATEAAYN-QGEPWLDELLEYLKDNRDYVADFLN---------KHLPGVKVTEPQGT 319
Query: 381 --SWDVFSE-----------ILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKR 427
+W E +LE+ V +PGS FG G GF+R++ R + EA +R
Sbjct: 320 YLAWLDCRELGLDDSELAEFLLEEAKVALSPGSTFGEEGSGFVRLNFACPRAILEEALER 379
Query: 428 FKHLYK 433
K K
Sbjct: 380 LKRALK 385
|
Length = 388 |
| >gnl|CDD|236119 PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 2e-13
Identities = 91/391 (23%), Positives = 147/391 (37%), Gaps = 61/391 (15%)
Query: 50 ARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKP 109
AAH PD ++ L +G +P+P VI ALA + A GY G
Sbjct: 19 KATAAAH----PDG-IVDLSVGTPVDPVPPVIQEALAAAADA-------PGYPTTAGTPE 66
Query: 110 LRAAIASTFYKDLGI---EEGDIFVSDGAKCDISRL--QIVFGSNVTMAVQDPSYPAYVD 164
LR AI + G+ + + G+K ++ L + G + + + +YP Y
Sbjct: 67 LREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLLGLGPGDVVVIPELAYPTYEV 126
Query: 165 SSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATR 224
+ + G T + G R +I+ SP+NPTG
Sbjct: 127 GARLAGATVVRADSLTELGP-------------------QRPALIWLNSPSNPTGRVLGV 167
Query: 225 EQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIP----GAKEVAIETSSFSKYAG 280
+ L ++V +A++ G+++ D Y D P SI + P G + S SK +
Sbjct: 168 DHLRKVVAWARERGAVVASDECYLELGWDAEPVSILD-PRVCGGDHTGLLAVHSLSKQSN 226
Query: 281 FTGVRLGWTV----IPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFK 336
G R G+ + ELL V K +V QA +A L +
Sbjct: 227 LAGYRAGFVAGDPALVAELL-----EVRKHAGMMVPAPV-------QAAMVAALGDDA-- 272
Query: 337 AVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVT 396
V E Y ++ + GF+V + Y+W G WD + + E+ +V
Sbjct: 273 HVREQRERYARRRAVLRPALEAAGFRVDHSEAGLYLWATR-GEDCWDTVAWLAERGILV- 330
Query: 397 TPGSGFGPGGEGFIRVSAFGHRGNVLEACKR 427
PG +GP G +RV+ + A +R
Sbjct: 331 APGDFYGPAGAQHVRVALTATDERIAAAVER 361
|
Length = 364 |
| >gnl|CDD|235749 PRK06225, PRK06225, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 4e-13
Identities = 65/282 (23%), Positives = 111/282 (39%), Gaps = 44/282 (15%)
Query: 59 KYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEG-YSGYGAEQGEKPLRAAIAST 117
+ D E+I +G E + A+ + +EG Y Y +G LR I
Sbjct: 24 VFKDKEMIWMGQNTNHLGPHEEVREAMIR-----CIEEGEYCKYPPPEGFPELRELIL-- 76
Query: 118 FYKDLGIEEGDIFVSDGAKCDISRLQIV---FGSNVTMAVQDPSYPAYVDSSVIMGQTGE 174
KDLG+++ + ++ GA L +V F S AV P Y+ + G
Sbjct: 77 --KDLGLDDDEALITAGA---TESLYLVMRAFLSPGDNAVT--PDPGYLIIDNFASRFGA 129
Query: 175 FQKDAEKYGKIEYMRCTAENGF--FPDLSTVA---RTDIIFFCSPNNPTGAAATREQLTR 229
+ Y + E + P+L T +I+ P NP G++ T E++
Sbjct: 130 EVIEVPIY--------SEECNYKLTPELVKENMDENTRLIYLIDPLNPLGSSYTEEEIKE 181
Query: 230 LVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWT 289
+ A+DN + +++D Y + + + + A E + + SFSK G G+R+G
Sbjct: 182 FAEIARDNDAFLLHDCTYRDFAREHTLAAEY----APEHTVTSYSFSKIFGMAGLRIGAV 237
Query: 290 VIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLS 331
V +L+ V D G + I+Q +A L
Sbjct: 238 VATPDLIEVVKSIVINDL---------GTNVIAQEAAIAGLK 270
|
Length = 380 |
| >gnl|CDD|215089 PLN00175, PLN00175, aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 5e-13
Identities = 84/321 (26%), Positives = 129/321 (40%), Gaps = 36/321 (11%)
Query: 95 QEGYSGYGAEQGEKPLRAAIASTFYKDLGIE---EGDIFVSDGAKCDISRLQIVF---GS 148
++G + Y G L +AIA F KD G+ E ++ V+ G I+ + G
Sbjct: 81 RDGKNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILGLINPGD 140
Query: 149 NVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA---- 204
V + P Y +Y + + G KI+ + + P+ A
Sbjct: 141 EVILFA--PFYDSYEATLSMAG------------AKIKTVTLRPPDFAVPEDELKAAFTS 186
Query: 205 RTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPG 264
+T I +P+NPTG TRE+L + K+N + D Y + + S+ +PG
Sbjct: 187 KTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPG 246
Query: 265 AKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQA 324
E + +S K TG ++GW + P L + G A F F A+ + A
Sbjct: 247 MYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTW--GVRQAHSF-----LTFATATPMQWA 299
Query: 325 GGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQF-PGRSSWD 383
A +PE + E+ Y DI+VE +GFKVY +V V P D
Sbjct: 300 AVAALRAPESYYE--ELKRDYSAKKDILVEGLKEVGFKVYPSSGTYFVMVDHTPFGFEND 357
Query: 384 V-FSEIL-EKTHVVTTPGSGF 402
+ F E L E+ V P S F
Sbjct: 358 IAFCEYLIEEVGVAAIPPSVF 378
|
Length = 413 |
| >gnl|CDD|188462 TIGR03947, viomycin_VioD, capreomycidine synthase | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 3e-12
Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 21/149 (14%)
Query: 154 VQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA-----RTDI 208
V DP+Y + +V G ++ A GF PDL + RT
Sbjct: 98 VVDPAYHSLSHLAVATG------------CEVRPWPLLAVRGFRPDLDALRALLTPRTRA 145
Query: 209 IFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAK-E 267
+ P+NPTGA+ T +L L++ A +G+++++D+A+A + D P P A +
Sbjct: 146 VVVNFPHNPTGASVTPRELDELLERAARSGAVLLWDNAFADLVHDAPP---LPDPSALYD 202
Query: 268 VAIETSSFSKYAGFTGVRLGWTVIPKELL 296
I + SK G G+R+GW V P +LL
Sbjct: 203 RVISFGTLSKAFGLPGLRVGWCVGPADLL 231
|
Members of this family are the enzyme capreomycidine synthase, which performs the second of two steps in the biosynthesis of 2S,3R-capreomycidine from arginine. Capreomycidine is an unusual amino acid used by non-ribosomal peptide synthases (NRPS) to make the tuberactinomycin class of peptide antibiotic. The best characterized member is VioD from the biosynthetic pathway for viomycin [Cellular processes, Biosynthesis of natural products]. Length = 359 |
| >gnl|CDD|179559 PRK03321, PRK03321, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 5e-12
Identities = 60/212 (28%), Positives = 96/212 (45%), Gaps = 28/212 (13%)
Query: 205 RTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIP 263
RT +IF C+PNNPTG T +L R + A ++V D AY Y+ DD+ P + +
Sbjct: 145 RTRLIFVCNPNNPTGTVVTPAELARFLD-AVPADVLVVLDEAYVEYVRDDDVPDGLELVR 203
Query: 264 GAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQ 323
V + +FSK G G+R+G+ V E++ R V F ++++Q
Sbjct: 204 DHPNVVV-LRTFSKAYGLAGLRVGYAVGHPEVI---------AALRKVAVPF-SVNSLAQ 252
Query: 324 AGGLACLSPEG--FKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSS 381
A +A L+ E + V V+ D + + G+ V + A +VW+ R+
Sbjct: 253 AAAIASLAAEDELLERVDAVV----AERDRVRAALRAAGWTVPPSQ-ANFVWLPLGERT- 306
Query: 382 WDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS 413
F+ + VV P F GEG +RV+
Sbjct: 307 -ADFAAAAAEAGVVVRP---F--AGEG-VRVT 331
|
Length = 352 |
| >gnl|CDD|188122 TIGR01264, tyr_amTase_E, tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 1e-11
Identities = 93/409 (22%), Positives = 151/409 (36%), Gaps = 83/409 (20%)
Query: 61 PDAEVISLGIGDTTE----PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIAS 116
P+ VI L IGD T P + A+ +L + + Y+GY G R AIAS
Sbjct: 29 PEKPVIKLSIGDPTVFGNLPTDPEVMQAMKD---SLDSGK-YNGYAPTVGALSAREAIAS 84
Query: 117 TFYK-DLGIEEGDIFVSDGAKCDISRLQIVF---GSNVTMAVQDPSYPAYVDSSVIMGQT 172
++ D IE D+ + G I G N+ V P +P Y ++
Sbjct: 85 YYHNPDGPIEADDVVLCSGCSHAIEMCIAALANAGQNIL--VPRPGFPLY--RTL----- 135
Query: 173 GEFQKDAEKYG-KIEYMRCTAENGFFPDLSTVA-----RTDIIFFCSPNNPTGAAATREQ 226
AE G +++ + + DL + +T + +P+NP G+ +R+
Sbjct: 136 ------AESMGIEVKLYNLLPDKSWEIDLKQLESLIDEKTAALVVNNPSNPCGSVFSRQH 189
Query: 227 LTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSS----------FS 276
L ++ A+ I+ D Y + GA + + S +
Sbjct: 190 LEEILAVAERQCLPIIADEIYGDMV----------FSGATFEPVASLSSNVPILSCGGLA 239
Query: 277 KYAGFTGVRLGWTVI--PKELL--FSDGFPVAKDFNRIV--CTCFNGA-SNISQAGGLAC 329
K G RLGW +I + +L DG + K RI+ CT GA +I
Sbjct: 240 KRWLVPGWRLGWIIIHDRRGILRDIRDG--LVKLSQRILGPCTIVQGALPSILLR----- 292
Query: 330 LSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAPYVWV-----QFPGRSSWD 383
+P+ + + + N + ++ G + A Y+ V FP + D
Sbjct: 293 -TPQEY--FDGTLSVLESNAMLCYGALAAVPGLQPVMPSGAMYMMVGIEMEHFPEFKN-D 348
Query: 384 V--FSEILEKTHVVTTPGSGFG-PGGEGFIRVSAFGHRGNVLEACKRFK 429
V ++ + V PGS F P GF RV + EAC R +
Sbjct: 349 VEFTERLIAEQSVFCLPGSCFEYP---GFFRVVLTVPVVMMEEACSRIQ 394
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs [Energy metabolism, Amino acids and amines]. Length = 401 |
| >gnl|CDD|180403 PRK06107, PRK06107, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 1e-11
Identities = 94/406 (23%), Positives = 154/406 (37%), Gaps = 54/406 (13%)
Query: 47 PEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQG 106
P A A L+ ++ L +G+ P+ T K++ + + G + Y G
Sbjct: 17 PSTAAAARARELRAAGRSIVDLTVGE-----PDFDTPDHIKQAAVAAIERGETKYTLVNG 71
Query: 107 EKPLRAAIASTFYKDLGIEEGD--IFVSDGAKCDI-SRLQIVFGSNVTMAVQDPSYPAYV 163
LR AI + + G+ D I V GAK I L + + + P + +Y
Sbjct: 72 TPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMATLEAGDEVIIPAPYWVSYP 131
Query: 164 DSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFF--PDLSTVA---RTDIIFFCSPNNPT 218
D + G + C E GF P+ A RT + +P+NPT
Sbjct: 132 DMVLAND------------GTPVIVACPEEQGFKLTPEALEAAITPRTRWLILNAPSNPT 179
Query: 219 GAAATREQLTRLVQFAKDNGSIIVY-DSAYALYISDDNPRS--IFEIPGAKEVAIETSSF 275
GA +R +L L + ++V D Y DD P + P ++ + T+
Sbjct: 180 GAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGV 239
Query: 276 SKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACL-SPEG 334
SK TG R+G+ P +L+ + N++ + S+ISQA A L +
Sbjct: 240 SKTYAMTGWRIGYAAGPADLIAA--------INKLQSQSSSCPSSISQAAAAAALNGDQS 291
Query: 335 FKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAPYVWVQFPG------------RSS 381
F V E + YK+ D + N++ G A Y++V G +
Sbjct: 292 F--VTESVAVYKQRRDYALALLNAIPGLSCLVPDGAFYLYVNCAGLIGKTTPEGKVLETD 349
Query: 382 WDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKR 427
DV +L+ V G+ +G + R+S + EAC R
Sbjct: 350 QDVVLYLLDSAGVAVVQGTAYGLS--PYFRLSIATSLETLEEACAR 393
|
Length = 402 |
| >gnl|CDD|235064 PRK02731, PRK02731, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 65.2 bits (160), Expect = 2e-11
Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 11/131 (8%)
Query: 205 RTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPG 264
RT ++F +PNNPTG E++ R + ++V D AYA Y+ + E+
Sbjct: 154 RTRLVFIANPNNPTGTYLPAEEVERFLA-GVPPDVLVVLDEAYAEYVRRKDYEDGLELVA 212
Query: 265 AKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQA 324
+ T +FSK G G+R+G+ + P E + NR+ FN ++++ A
Sbjct: 213 KFPNVVVTRTFSKAYGLAGLRVGYGIAPPE--------IIDALNRVRQP-FN-VNSLALA 262
Query: 325 GGLACLSPEGF 335
+A L + F
Sbjct: 263 AAVAALDDDAF 273
|
Length = 367 |
| >gnl|CDD|234872 PRK00950, PRK00950, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 2e-11
Identities = 59/215 (27%), Positives = 98/215 (45%), Gaps = 36/215 (16%)
Query: 205 RTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPG 264
+T +IF C+PNNPTG E + ++ + +++ D AY + D P
Sbjct: 158 KTKVIFLCTPNNPTGNLIPEEDIRKI---LESTDALVFVDEAYVEFAEYDY------TPL 208
Query: 265 AKE----VAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASN 320
A E + T FSK G G+R+G+ +P+ L D+ T F+ +
Sbjct: 209 ALEYDNLIIGRT--FSKVFGLAGLRIGYGFVPEWL---------IDYYMRAKTPFS-LTR 256
Query: 321 ISQAGGLACLSPEGF--KAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPG 378
+SQA +A LS + + K++ I ++ + + +N L FKVY + A +V V
Sbjct: 257 LSQAAAIAALSDKEYIEKSIEHGI----KSREYL---YNELPFKVYPSE-ANFVLVDVTP 308
Query: 379 RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS 413
++ F E L K V+ + F G+ +IRVS
Sbjct: 309 MTA-KEFCEELLKRGVIVRDCTSFRGLGDYYIRVS 342
|
Length = 361 |
| >gnl|CDD|235106 PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 1e-10
Identities = 75/320 (23%), Positives = 134/320 (41%), Gaps = 63/320 (19%)
Query: 110 LRAAIASTFYKDLGIEEGDIFVSDGAKCD-----ISRLQIVFGSNVTMAVQDPSYPAYVD 164
LR +A K LG++E + GA D ISR + G+N MA +P++ Y
Sbjct: 69 LRTKVA----KHLGVDEEQLLF--GAGLDEVIQMISRALLNPGTNTVMA--EPTFSQYRH 120
Query: 165 SSVIMG--------QTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNN 216
+++I G + G +A I+ +T I++ C+PNN
Sbjct: 121 NAIIEGAEVREVPLKDGGHDLEA-MLKAIDE-----------------QTKIVWICNPNN 162
Query: 217 PTGAAATREQLTR-LVQFAKDNGSIIVYDSAYALYIS-DDNPRSIFEIPGAKEVAIETSS 274
PTG E+L L ++V D AY Y++ +D P ++ + + + + +
Sbjct: 163 PTGTYVNHEELLSFLESVPSH--VLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIV-LRT 219
Query: 275 FSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEG 334
FSK G +R+G+ + +EL+ + N I FN + I+Q +A L +
Sbjct: 220 FSKAYGLAALRVGYGIASEELI--------EKLN-IARPPFN-TTRIAQYAAIAALEDQA 269
Query: 335 FKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHV 394
F + E + E + G Y +++V GR + ++F +L+K
Sbjct: 270 F--LKECVEKNAEGLEQYYAFCKEYGLFYYPS-QTNFIFVDT-GRDANELFEALLKKG-Y 324
Query: 395 VTTPGSGFG-PGGEGFIRVS 413
+ G+ G P G +R++
Sbjct: 325 IVRSGAALGFPTG---VRIT 341
|
Length = 359 |
| >gnl|CDD|180542 PRK06358, PRK06358, threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 1e-10
Identities = 43/186 (23%), Positives = 89/186 (47%), Gaps = 27/186 (14%)
Query: 110 LRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIM 169
LR IAS F + ++ ++ + +GA +++F + V P +I+
Sbjct: 59 LRKRIAS-FEQ---LDLENVILGNGAT------ELIFN---IVKVTKPK------KVLIL 99
Query: 170 GQT-GEFQKDAEKY-GKIEYMRCTAENGFFPD---LSTVART-DIIFFCSPNNPTGAAAT 223
T E+++ + + +IEY T E F + L + D++F C+PNNPTG +
Sbjct: 100 APTFAEYERALKAFDAEIEYAELTEETNFAANEIVLEEIKEEIDLVFLCNPNNPTGQLIS 159
Query: 224 REQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRS-IFEIPGAKEVAIETSSFSKYAGFT 282
+E++ +++ + ++ D A+ ++ ++ S I + K + I +F+K+
Sbjct: 160 KEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLII-IRAFTKFFAIP 218
Query: 283 GVRLGW 288
G+RLG+
Sbjct: 219 GLRLGY 224
|
Length = 354 |
| >gnl|CDD|236517 PRK09440, avtA, valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 2e-10
Identities = 72/349 (20%), Positives = 124/349 (35%), Gaps = 87/349 (24%)
Query: 101 YGAEQGEKPLRAAIASTFYKDLG--IEEGDIFVSDGAK--------------CDISRLQI 144
Y QG+ L A+A+ + G I +I +++G++ D S +I
Sbjct: 70 YDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQSAFFYLFNLFAGRRADGSLKKI 129
Query: 145 VFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFF---PDLS 201
+F +A P Y Y D+ + ++ + E G F D
Sbjct: 130 LF----PLA---PEYIGYADAGLEEDLFVSYRPNIEL----------LPEGQFKYHVDFE 172
Query: 202 TVARTD---IIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRS 258
+ + I P NPTG T E+L +L A+ + ++ D+AY P
Sbjct: 173 HLHIDEDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPF----PGI 228
Query: 259 IFEIPGAKEVA-------IETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIV 311
IF E I S SK G GVR G + +E++ + N I+
Sbjct: 229 IFS-----EATPLWNPNIILCMSLSK-LGLPGVRCGIVIADEEII-----EALSNMNGII 277
Query: 312 CTCFNGASNISQA--------GGLACLSPEGFKAVHEVIG-FYKENTDIIVETFN----S 358
+ A G L LS VI FY++ + +
Sbjct: 278 SLA---PGRLGPAIAAEMIESGDLLRLS-------ETVIRPFYRQKVQLAIALLRRYLPD 327
Query: 359 LGFKVYGGKNAPYVWVQFPGR--SSWDVFSEILEKTHVVTTPGSGFGPG 405
++ + A ++W+ F ++ +++ + L+ V+ PG F PG
Sbjct: 328 EPCLIHKPEGAIFLWLWFKDLPITTEELY-QRLKARGVLVVPGHYFFPG 375
|
Length = 416 |
| >gnl|CDD|213963 TIGR04350, C_S_lyase_PatB, putative C-S lyase | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 2e-10
Identities = 51/245 (20%), Positives = 87/245 (35%), Gaps = 32/245 (13%)
Query: 60 YPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFY 119
+ A+V+ + + D P + AL +R + GY L AA+ +
Sbjct: 22 FGRADVLPMWVADMDFATPPAVLEALKQR-----LEHPVFGY--TLPPDSLYAAVINWLA 74
Query: 120 K--DLGIEEGDIFVSDGAKCDISRLQIVF---GSNVTMAVQDPSYPAYVDSSVIMGQ--- 171
+ I+ I G + G V VQ P YP ++ + G+
Sbjct: 75 QRHGWQIDPEWIVFLPGVVPSLFAAVRALTAPGEGV--IVQTPVYPPFLSAVKSNGRELV 132
Query: 172 TGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA--RTDIIFFCSPNNPTGAAATREQLTR 229
+ D +Y + DL + ++ CSP+NP G TRE+LTR
Sbjct: 133 LNPLKLDPGRYR-FD----------LEDLEDAITEKARLLLLCSPHNPVGRVWTREELTR 181
Query: 230 LVQFAKDNGSIIVYDSAYALYISDDNPRSIFE--IPGAKEVAIETSSFSKYAGFTGVRLG 287
L + + ++V D +A + N P E + S K G+ +
Sbjct: 182 LAELCLRHNVVVVSDEIHADLVYPPNKHIPLASLSPEIAERTVTLLSPGKTFNIAGLNIS 241
Query: 288 WTVIP 292
+ +IP
Sbjct: 242 FAIIP 246
|
Members of this subfamily are probable C-S lyases from a family of pyridoxal phosphate-dependent enzymes that tend to be (mis)annotated as probable aminotransferases. One member is PatB of Bacillus subtilis, a proven C-S-lyase. Another is the virulence factor cystalysin from Treponema denticola, whose hemolysin activity may stem from H2S production. Members of the seed alignment occur next to examples of the enzyme 5-histidylcysteine sulfoxide synthase, from ovothiol A biosynthesis, and would be expected to perform a C-S cleavage of 5-histidylcysteine sulfoxide to leave 1-methyl-4-mercaptohistidine (ovothiol A). Length = 384 |
| >gnl|CDD|181738 PRK09265, PRK09265, aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 2e-10
Identities = 72/254 (28%), Positives = 105/254 (41%), Gaps = 82/254 (32%)
Query: 78 PEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEE---GDIFVSDG 134
P+ I + + L T +GYS +G R AI +Y+ GI + DI++ +G
Sbjct: 51 PDEILRDVIR---NLPTAQGYS---DSKGLFSARKAIM-QYYQQKGIPDVDVDDIYIGNG 103
Query: 135 AKCDISRLQIVFGSNVTMAVQ------D------PSYPAYVDSSVIMGQTGEFQKDAEKY 182
S L + MA+Q D P YP + + + G
Sbjct: 104 V----SEL-------IVMAMQALLNNGDEVLVPAPDYPLWTAAVSLSG------------ 140
Query: 183 GKIEYMRCTAENGFFPDLSTV-----ARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDN 237
GK + C E G+FPDL + RT I +PNNPTGA ++E L +V+ A+ +
Sbjct: 141 GKPVHYLCDEEAGWFPDLDDIRSKITPRTKAIVIINPNNPTGAVYSKELLEEIVEIARQH 200
Query: 238 GSIIVYDSAY--ALYISDDNPRSIFEIPGAKEVAIET----------SSFSK-Y--AGFT 282
II D Y LY D GA ++I + + SK Y AGF
Sbjct: 201 NLIIFADEIYDKILY--D----------GAVHISIASLAPDLLCVTFNGLSKAYRVAGF- 247
Query: 283 GVRLGWTVI--PKE 294
R+GW V+ PK+
Sbjct: 248 --RVGWMVLSGPKK 259
|
Length = 404 |
| >gnl|CDD|235654 PRK05957, PRK05957, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 4e-10
Identities = 50/204 (24%), Positives = 79/204 (38%), Gaps = 13/204 (6%)
Query: 204 ARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPR-SIFEI 262
+T I SPNNPTG L + Q ++G + D AY + D S I
Sbjct: 159 PKTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSI 218
Query: 263 PGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNIS 322
PG+ I S SK GF R+G+ VIP LL + +I T +S
Sbjct: 219 PGSGNHTISLYSLSKAYGFASWRIGYMVIPIHLL--------EAIKKIQDTILICPPVVS 270
Query: 323 QAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLG--FKVYGGKNAPYVWVQFPGRS 380
Q L L G + + + I++++ L ++ A Y +++
Sbjct: 271 QYAALGALQ-VGKSYCQQHLPEIAQVRQILLKSLGQLQDRCTLHPANGAFYCFLKVNTDL 329
Query: 381 SWDVFSEILEKTH-VVTTPGSGFG 403
+ + L + + V PG+ FG
Sbjct: 330 NDFELVKQLIREYRVAVIPGTTFG 353
|
Length = 389 |
| >gnl|CDD|180281 PRK05839, PRK05839, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 4e-10
Identities = 52/218 (23%), Positives = 83/218 (38%), Gaps = 47/218 (21%)
Query: 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKD 121
+ + + L IG+ P+ I AL ++ L+ Y GE+ LR A F +
Sbjct: 23 EYKGLDLTIGEPQFETPKFIQDALKNNAHLLNK------YPKSAGEESLREAQRGFFKRR 76
Query: 122 LGIEEGDIFVSDGAKCDISRLQIVFGS----------------NVTMAVQDPSYPAYVDS 165
IE + L FG+ N T+A +P Y Y +
Sbjct: 77 FKIE-----------LKENELIPTFGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGA 125
Query: 166 SVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS--TVARTDIIFFCSPNNPTGAAAT 223
++ K+ M T EN F P L+ + D++ SPNNPTG +
Sbjct: 126 AIASR------------AKVLLMPLTKENDFTPSLNEKELQEVDLVILNSPNNPTGRTLS 173
Query: 224 REQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFE 261
E+L V+ A + I++ D Y+ + P S+ E
Sbjct: 174 LEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLE 211
|
Length = 374 |
| >gnl|CDD|226485 COG3977, COG3977, Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 6e-10
Identities = 85/380 (22%), Positives = 140/380 (36%), Gaps = 63/380 (16%)
Query: 58 LKYPDAEVISLGIGDTTEPIPEV-------ITSALAKRSYALSTQEGYSGYGAEQGEKPL 110
L+ P A I LG G+ IPE+ + LA E Y QG+ L
Sbjct: 27 LRTPGA--IMLGGGNPAR-IPEMDDYFQDLLAEMLASGKAT----EALCNYDGPQGKAVL 79
Query: 111 RAAIASTFYKDLG--IEEGDIFVSDGAKCDISRLQIVFG----SNVTMAVQDPSYPAYVD 164
A+A ++ G I +I +++G++ L +F + P P Y+
Sbjct: 80 IDALAKMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIG 139
Query: 165 SSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFF---PDLSTVA---RTDIIFFCSPNNPT 218
+ G + A+ IE + G F D + T I P NPT
Sbjct: 140 YADA-GLEEDLFVSAKP--NIELL----PAGQFKYHVDFEHLHIGESTGAICVSRPTNPT 192
Query: 219 GAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFE--IPGAKEVAIETSSFS 276
G T E+L +L A+ +G ++ D+AY + P IF P E I S S
Sbjct: 193 GNVLTDEELAKLDALARQHGIPLIIDNAYGVPF----PGIIFSDATPLWNENIILCMSLS 248
Query: 277 KYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNG-----ASNISQAGGLACLS 331
K G G R G +I E + + N I+ A+ + ++G L LS
Sbjct: 249 K-LGLPGSRCG-IIIANEKVIQ----AITNMNGIISLAPGRMGPAIAAEMIESGDLLRLS 302
Query: 332 PEGFKAVHEVIGFYKENTDIIVETFNS----LGFKVYGGKNAPYVWVQFPGR--SSWDVF 385
+ + FY+ + ++ + A ++W+ F ++ +++
Sbjct: 303 EQVIRP------FYRNRVQTTIAILRRYLPEYRCLIHKPEGAIFLWLWFKDLPITTEELY 356
Query: 386 SEILEKTHVVTTPGSGFGPG 405
L+ V+ PG F PG
Sbjct: 357 QR-LKARGVLMVPGHYFFPG 375
|
Length = 417 |
| >gnl|CDD|236095 PRK07777, PRK07777, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 84/394 (21%), Positives = 141/394 (35%), Gaps = 65/394 (16%)
Query: 66 ISLGIG----DTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKD 121
++LG G D + E A+A G + Y G LRAAIA+ +
Sbjct: 27 VNLGQGFPDEDGPPEMLEAAQEAIA---------GGVNQYPPGPGIPELRAAIAAQRRRR 77
Query: 122 LGIE---EGDIFVSDGAKCDISRLQIVF---GSNVTMAVQDPSYPAYVDSSVIMGQTGEF 175
G+E + ++ V+ GA I+ + G V + +P Y +Y + G
Sbjct: 78 YGLEYDPDTEVLVTVGATEAIAAAVLGLVEPGDEVL--LIEPYYDSYAAVIAMAGAH--- 132
Query: 176 QKDAEKYGKIEYMRCTA-----ENGFFPDLSTV-----ARTDIIFFCSPNNPTGAAATRE 225
R GF DL + RT + SP+NPTG T
Sbjct: 133 -------------RVPVPLVPDGRGFALDLDALRAAVTPRTRALIVNSPHNPTGTVLTAA 179
Query: 226 QLTRLVQFAKDNGSIIVYDSAYALYISDDNP-RSIFEIPGAKEVAIETSSFSKYAGFTGV 284
+L + + A ++ +++ D Y + D + +PG +E + SS +K TG
Sbjct: 180 ELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGW 239
Query: 285 RLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGF 344
++GW P L+ AK + + G + A A + + V +
Sbjct: 240 KIGWACGPAPLI--AAVRAAKQY-----LTYVGGAPFQPAVAHALDHEDAW--VAALRDS 290
Query: 345 YKENTDIIVETFNSLGFKVYGGKNAPYVWVQ---FPGRSSWDVFSEILEKTHVVTTPGSG 401
+ D + GF+V+ ++ + + E+ V P S
Sbjct: 291 LQAKRDRLAAGLAEAGFEVHDSAGTYFLCADPRPLGYDDGTEFCRALPERVGVAAIPMSV 350
Query: 402 F-GPGGEG--FIRVSAFGHRGNVL-EACKRFKHL 431
F P +R AF R + L EA +R + L
Sbjct: 351 FYDPADAWNHLVRF-AFCKRDDTLDEAIRRLRAL 383
|
Length = 387 |
| >gnl|CDD|215074 PLN00145, PLN00145, tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 6e-09
Identities = 61/238 (25%), Positives = 95/238 (39%), Gaps = 26/238 (10%)
Query: 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEG-YSGYGAEQGEKPLRAAIASTFYKDLG 123
V+ LG GD + P T+ A+ + A + + G Y+ Y G P R AIA +DL
Sbjct: 54 VLPLGHGDPS-AFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLP 112
Query: 124 IE--EGDIFVSDGAKCDISRLQIVF---GSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKD 178
E DI+++ G I + V G+N+ + P YP Y +V G
Sbjct: 113 YELSTDDIYLTAGCAQAIEIIMSVLAQPGANILLP--RPGYPLYEARAVFSGL------- 163
Query: 179 AEKYGKIEYMRCTAENGFFPDLSTV-----ARTDIIFFCSPNNPTGAAATREQLTRLVQF 233
++ + E G+ DL V T + +PNNP G+ + E L ++ +
Sbjct: 164 -----EVRHFDLLPERGWEVDLEGVEALADENTVAMVIINPNNPCGSVYSYEHLAKIAET 218
Query: 234 AKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVI 291
A+ G +++ D Y P + G + S SK G RLGW
Sbjct: 219 ARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVPGWRLGWIAT 276
|
Length = 430 |
| >gnl|CDD|235115 PRK03317, PRK03317, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 1e-08
Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 20/161 (12%)
Query: 205 RTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPG 264
R D++F SPNNPTG A + + ++ A I+V D AYA + P ++ +P
Sbjct: 160 RPDVVFLTSPNNPTGTALPLDDVEAILDAA---PGIVVVDEAYAEFRRSGTPSALTLLPE 216
Query: 265 AKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQA 324
+ + + + SK F G RLG+ ++ D R+V ++ S ++QA
Sbjct: 217 YPRLVV-SRTMSKAFAFAGGRLGYLAAAPAVV---------DALRLVRLPYH-LSAVTQA 265
Query: 325 GGLACL--SPEGFKAVHEVIGFYKENTDIIVETFNSLGFKV 363
A L + E +V + + D +V LG +V
Sbjct: 266 AARAALRHADELLASVAAL----RAERDRVVAWLRELGLRV 302
|
Length = 368 |
| >gnl|CDD|134568 PRK01533, PRK01533, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 2e-08
Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 25/164 (15%)
Query: 139 ISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFP 198
ISR + G N+ A ++P Y ++I G E NG +
Sbjct: 97 ISRAVLKAGDNIVTA--GATFPQYRHHAIIEG--------------CEVKEVALNNGVY- 139
Query: 199 DLSTVA-----RTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYIS- 252
DL ++ T I++ C+PNNPTG +LT+ ++ +N ++IV D AY Y++
Sbjct: 140 DLDEISSVVDNDTKIVWICNPNNPTGTYVNDRKLTQFIEGISEN-TLIVIDEAYYEYVTA 198
Query: 253 DDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELL 296
D P ++ + K + + +FSK G R+G+ V +EL+
Sbjct: 199 KDFPETLPLLEKHKNILV-LRTFSKAYGLASFRVGYAVGHEELI 241
|
Length = 366 |
| >gnl|CDD|184829 PRK14807, PRK14807, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 2e-08
Identities = 66/285 (23%), Positives = 119/285 (41%), Gaps = 61/285 (21%)
Query: 123 GIEEGDIFVSDGAKCDISRLQIVFGS-NVTMAVQDPSYPAYVDSSVIMG----------- 170
+ +IFV +G+ I + + F + + PS+ Y S I G
Sbjct: 73 SVVPTNIFVGNGSDEIIHLIMLAFINKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLKED 132
Query: 171 ---QTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQL 227
G F K EKY + ++F C+PNNPTG+ RE +
Sbjct: 133 YTYDVGSFIKVIEKY----------------------QPKLVFLCNPNNPTGSVIEREDI 170
Query: 228 TRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLG 287
++++ K G I+V D AY + + +I ++ E I + SK G G+R+G
Sbjct: 171 IKIIE--KSRG-IVVVDEAYFEFYGN----TIVDVINEFENLIVLRTLSKAFGLAGLRVG 223
Query: 288 WTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKE 347
+ V + +L K N +V + +N +++SQ L L K E + +
Sbjct: 224 YAVANENIL--------KYLN-LVKSPYN-INSLSQVIALKVLRTGVLK---ERVNYILN 270
Query: 348 NTDIIVETFNSL-GFKVYGGKNAPYVWVQFPGRSSWDVFSEILEK 391
+ +++ + + G KVY K ++ V+F + + V+ +LE+
Sbjct: 271 ERERLIKELSKIPGIKVYPSK-TNFILVKF--KDADYVYQGLLER 312
|
Length = 351 |
| >gnl|CDD|184830 PRK14809, PRK14809, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 3e-08
Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 208 IIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKE 267
I++ SP+NPTG+ +++ L + D +++V D AY + + P ++ + +
Sbjct: 157 IVYLTSPHNPTGSEIPLDEVEALAE-RTDEETLVVVDEAYGEFA--ERPSAVALVEERDD 213
Query: 268 VAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGL 327
VA+ +FSK G G+RLG+ V+P+E A + R V T F AS ++ GL
Sbjct: 214 VAV-LRTFSKAYGLAGLRLGYAVVPEEW--------ADAYAR-VNTPF-AASELACRAGL 262
Query: 328 ACLSPE 333
A L +
Sbjct: 263 AALDDD 268
|
Length = 357 |
| >gnl|CDD|178262 PLN02656, PLN02656, tyrosine transaminase | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 7e-08
Identities = 55/236 (23%), Positives = 92/236 (38%), Gaps = 22/236 (9%)
Query: 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQ-EGYSGYGAEQGEKPLRAAIASTFYKDL- 122
VISLG+GD T T+ +A+ + + Q ++GY G R AIA +DL
Sbjct: 33 VISLGMGDPT-AYSCFHTTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLP 91
Query: 123 -GIEEGDIFVSDGAKCDIS-RLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAE 180
+ D+F++ G I L ++ + + P +P Y +
Sbjct: 92 YKLSLDDVFITSGCTQAIDVALSMLARPGANILLPRPGFPIYELCAAFRHL--------- 142
Query: 181 KYGKIEYMRCTAENGFFPDLSTV-----ARTDIIFFCSPNNPTGAAATREQLTRLVQFAK 235
++ Y+ E G+ DL V T + +P NP G + + L ++ + A+
Sbjct: 143 ---EVRYVDLLPEKGWEVDLDAVEALADQNTVALVIINPGNPCGNVYSYQHLKKIAETAE 199
Query: 236 DNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVI 291
+++ D Y NP + G+ + S SK G RLGW V
Sbjct: 200 KLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRLGWFVT 255
|
Length = 409 |
| >gnl|CDD|181651 PRK09105, PRK09105, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 9e-08
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 200 LSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSI 259
L+ +I+ C+PNNPTG R + L+ K GS+++ D AY + D P +
Sbjct: 160 LAADPNAGLIYICNPNNPTGTVTPRADIEWLLA-NKPAGSVLLVDEAYIHF--SDAPSVV 216
Query: 260 FEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELL 296
+ K++ I +FSK G G+RLG +LL
Sbjct: 217 DLVAQRKDL-IVLRTFSKLYGMAGMRLGLAAARPDLL 252
|
Length = 370 |
| >gnl|CDD|167650 PRK03967, PRK03967, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 1e-07
Identities = 51/197 (25%), Positives = 82/197 (41%), Gaps = 31/197 (15%)
Query: 104 EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYV 163
PLR AIA FY G++ +I V +G+ IS L +F + + P++ Y
Sbjct: 54 HITSDPLREAIA-EFY---GLDAENIAVGNGSDELISYLVKLFEGK-HIVITPPTFGMYS 108
Query: 164 DSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA----RTDIIFFCSPNNPTG 219
+ + G I + + F D +A +F CSPNNPTG
Sbjct: 109 FYAKLNG--------------IPVIDVPLKEDFTIDGERIAEKAKNASAVFICSPNNPTG 154
Query: 220 AAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYA 279
E++ +++ + G +V D AYA + I E P I +FSK
Sbjct: 155 NLQPEEEILKVL----ETGKPVVLDEAYAEFSGKSLIGLIDEYPN----LILLRTFSKAF 206
Query: 280 GFTGVRLGWTVIPKELL 296
G G+R G+ + +E++
Sbjct: 207 GLAGIRAGYAIANEEII 223
|
Length = 337 |
| >gnl|CDD|233289 TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 5e-07
Identities = 56/248 (22%), Positives = 90/248 (36%), Gaps = 43/248 (17%)
Query: 52 RKAAHMLKYPDAEVI--SLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKP 109
R+AA P + + S GI P+P + SA A E
Sbjct: 6 RRAAARYGIPPEDWLDLSTGINPLGPPVPPIPLSAWA----RYPDPEYDE---------- 51
Query: 110 LRAAIASTFYKDLGIEEGDIFVSDGAKCDISRL-QIVFGSNVTMAVQDPSYPAYVDSSVI 168
LRAA A+ + G+ + +GA+ I L +++ V V P+Y Y +
Sbjct: 52 LRAAAAAYY----GLPAASVLPVNGAQEAIYLLPRLLAPGRV--LVLAPTYSEYARAWRA 105
Query: 169 MGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLT 228
G D ++ + + D++ C+PNNPTG E L
Sbjct: 106 AGHEVVELPDLDRL-----------------PAALEEADLLVVCNPNNPTGRLIPPETLL 148
Query: 229 RLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGW 288
L + G +V D A+ + D S+ + S +K+ G G+RLG+
Sbjct: 149 ALAARLRARGGWLVVDEAFIDFTPDA---SLAPQAARFPGLVVLRSLTKFFGLAGLRLGF 205
Query: 289 TVIPKELL 296
V L+
Sbjct: 206 VVAHPALI 213
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see pfam00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 330 |
| >gnl|CDD|234972 PRK01688, PRK01688, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 1e-06
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 179 AEKYGKIEYMRCTAENGFFPDLSTVAR----TDIIFFCSPNNPTGAAATREQLTRLVQFA 234
AE G +E + + DL +A +++ CSPNNPTG + L L++
Sbjct: 116 AETIG-VEIRTVPTLDNWQLDLPAIADNLDGVKVVYVCSPNNPTGNLINPQDLRTLLELT 174
Query: 235 KDNGSIIVYDSAY 247
+ +I+V D AY
Sbjct: 175 RGK-AIVVADEAY 186
|
Length = 351 |
| >gnl|CDD|215119 PLN02187, PLN02187, rooty/superroot1 | Back alignment and domain information |
|---|
Score = 50.5 bits (120), Expect = 1e-06
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 18/165 (10%)
Query: 99 SGYGAEQGEKPLRAAIASTFYKDL--GIEEGDIFVSDGAKCDISRLQIVFGS----NVTM 152
+ YG G P R A+A +DL + DIF++ G I +IVF S N +
Sbjct: 102 NSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGI---EIVFESLARPNANI 158
Query: 153 AVQDPSYPAYVDSSVIMG-QTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFF 211
+ P +P Y + G + +F EK +I+ A D +TVA I
Sbjct: 159 LLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEA----IADENTVAMVVI--- 211
Query: 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNP 256
+PNNP G + + L ++ + A+ G +++ D Y I DNP
Sbjct: 212 -NPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNP 255
|
Length = 462 |
| >gnl|CDD|237361 PRK13355, PRK13355, bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 59/228 (25%), Positives = 92/228 (40%), Gaps = 48/228 (21%)
Query: 99 SGYGAEQGEKPLRAAIASTFYKDL----GIEEGDIFVSDGAKCDISRLQIVFGSNVTMAV 154
GY +G R AI Y L ++ DI+ +G +S L I + +
Sbjct: 179 EGYSDSKGLFSARKAIMQ--YAQLKGLPNVDVDDIYTGNG----VSEL-INLSMSALLDD 231
Query: 155 QD------PSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV----- 203
D P YP + + G G + RC ++ ++PD+ +
Sbjct: 232 GDEVLIPSPDYPLWTACVNLAG------------GTAVHYRCDEQSEWYPDIDDIRSKIT 279
Query: 204 ARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPR-SIFEI 262
+RT I +PNNPTGA RE L ++V A+++ II D Y + D SI +
Sbjct: 280 SRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASL 339
Query: 263 PGAKEVAIET-SSFSKYAGFTGVRLGWTVIP--KELLFSDGFPVAKDF 307
A ++ T S SK G R+GW ++ K + AKD+
Sbjct: 340 --APDLFCVTFSGLSKSHMIAGYRIGWMILSGNKRI--------AKDY 377
|
Length = 517 |
| >gnl|CDD|169399 PRK08354, PRK08354, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 3e-06
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 203 VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEI 262
V R ++FFC+PNNP G ++L L+ +D ++++ D A+ ++ P S
Sbjct: 115 VERNSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKK--PESP--- 169
Query: 263 PGAKEVAIETSSFSKYAGFTGVRLGW 288
E I+ +F+K G G+R+G+
Sbjct: 170 --EGENIIKLRTFTKSYGLPGIRVGY 193
|
Length = 311 |
| >gnl|CDD|181642 PRK09082, PRK09082, methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 3e-06
Identities = 54/221 (24%), Positives = 81/221 (36%), Gaps = 41/221 (18%)
Query: 94 TQEGYSGYGAEQGEKPLRAAIASTFYKDLGIE---EGDIFVSDGAK----CDISRL---- 142
G++ Y G LR AIA+ + G + + +I V+ GA I L
Sbjct: 56 MAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAILALVRPG 115
Query: 143 --QIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDL 200
IVF DPSY +Y + + G G+ + F D
Sbjct: 116 DEVIVF---------DPSYDSYAPAIELAG------------GRAVRVALQPP-DFRVDW 153
Query: 201 STVA-----RTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN 255
A RT +I +P+NP+G + + L Q ++ D Y + D
Sbjct: 154 QRFAAAISPRTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGA 213
Query: 256 P-RSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKEL 295
S+ P +E A SSF K TG ++G+ V P L
Sbjct: 214 GHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCVAPAAL 254
|
Length = 386 |
| >gnl|CDD|183514 PRK12414, PRK12414, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 3e-06
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 205 RTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNP-RSIFEIP 263
RT +I +P+NP+ + L RL Q ++ +I+ D Y + D S+
Sbjct: 162 RTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHR 221
Query: 264 GAKEVAIETSSFSKYAGFTGVRLGWTVIPKELL 296
E ++ SSF K TG R+G+ + P EL+
Sbjct: 222 ELAERSVIVSSFGKSYHVTGWRVGYCLAPAELM 254
|
Length = 384 |
| >gnl|CDD|224365 COG1448, TyrB, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 60/252 (23%), Positives = 86/252 (34%), Gaps = 40/252 (15%)
Query: 59 KYPDAEVISLGIG---DTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIA 115
P ++LGIG D P + A+ K L QE Y +G A+
Sbjct: 22 ADPRPNKVNLGIGVYKDEDGKTP--VLRAVKKAEKRLLEQEKTKNYLPIEGLPEFLEAVQ 79
Query: 116 S-TFYKDLGIEEGDIFVS------DGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVI 168
F D D + GA + F + T+ + DP++P + I
Sbjct: 80 KLLFGADSPALAEDRVATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKA---I 136
Query: 169 MGQTGEFQKDAEKYGKIEYMRCTAEN-------GFFPDLSTVARTDIIFF--CSPNNPTG 219
G ++E G DL T ++ C +NPTG
Sbjct: 137 FEAAG---------LEVETYPYYDAETKGLDFDGMLADLKTAPEGSVVLLHGCC-HNPTG 186
Query: 220 AAATREQLTRLVQFAKDNGSIIVYDSAYALYIS----DDNPRSIFEIPGAKEVAIETSSF 275
T EQ L K+ G I +D AY + D +F G E+ + SSF
Sbjct: 187 IDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEVG-PELLV-ASSF 244
Query: 276 SKYAGFTGVRLG 287
SK G G R+G
Sbjct: 245 SKNFGLYGERVG 256
|
Length = 396 |
| >gnl|CDD|165711 PLN00143, PLN00143, tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 3e-05
Identities = 60/255 (23%), Positives = 90/255 (35%), Gaps = 42/255 (16%)
Query: 66 ISLGIGDT-------TEPIPE-VITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIAST 117
IS G GD T I E I A+ RS ++ Y G P R AIA
Sbjct: 35 ISFGFGDPSCFECFRTTNIAEDAIVEAV--RS------AKFNSYAPTGGILPARRAIADY 86
Query: 118 FYKDL--GIEEGDIFVSDGAKCDISRLQIVF---GSNVTMAVQDPSYPAYVDSSVIMGQT 172
DL + D++++ G K + V +N+ + P +P +T
Sbjct: 87 LSNDLPYQLSPDDVYLTLGCKHAAEIIIKVLARPEANILLP--RPGFPDV--------ET 136
Query: 173 GEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA-----RTDIIFFCSPNNPTGAAATREQL 227
E I + E G+ DL V T + +P NP G+ + E L
Sbjct: 137 YAIFHHLE----IRHFDLLPEKGWEVDLDAVEAIADENTIAMVIINPGNPCGSVYSYEHL 192
Query: 228 TRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLG 287
++ + A+ G +++ D Y + P + + I S SK G LG
Sbjct: 193 NKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWMIPGWGLG 252
Query: 288 WTVI--PKELLFSDG 300
W V P LL
Sbjct: 253 WLVTCDPSGLLQICE 267
|
Length = 409 |
| >gnl|CDD|181212 PRK08056, PRK08056, threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 3e-05
Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 6/104 (5%)
Query: 191 TAENGFFPDLSTV----ARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSA 246
+G+ + + D +F C+PNNPTG R+ L + + K ++ D A
Sbjct: 124 READGWQLTDAILEALTPDLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEA 183
Query: 247 YALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTV 290
+ +I D I ++ + + S +K+ G+RLG+ V
Sbjct: 184 FIDFIP-DETGFIPQLADNPHLWV-LRSLTKFYAIPGLRLGYLV 225
|
Length = 356 |
| >gnl|CDD|235311 PRK04781, PRK04781, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 4e-05
Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 10/118 (8%)
Query: 185 IEYMRCTAENGFFPDLSTV------ARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNG 238
+E +GF D+ + + ++F CSP+NP G+A +Q+ R +Q +
Sbjct: 126 VEVPLVDGADGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERALQALQGK- 184
Query: 239 SIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELL 296
+++V D AY + D P ++ + +A+ + SK R+G + EL+
Sbjct: 185 ALVVVDEAYGEF--SDVPSAVGLLARYDNLAV-LRTLSKAHALAAARIGSLIANAELI 239
|
Length = 364 |
| >gnl|CDD|181580 PRK08912, PRK08912, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 5e-05
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Query: 204 ARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNP-RSIFEI 262
RT + +P NP G RE+L L +F + + ++ + D + + D + +
Sbjct: 158 PRTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTL 217
Query: 263 PGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAK 305
PG +E ++ S K TG ++G+ LL +AK
Sbjct: 218 PGMRERTVKIGSAGKIFSLTGWKVGFVCAAPPLL----RVLAK 256
|
Length = 387 |
| >gnl|CDD|179869 PRK04635, PRK04635, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 7e-05
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 198 PDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAY 247
+ + ++F C+PNNPTG R + +L++ D +I+V D AY
Sbjct: 140 DYIEQLDGAKLVFICNPNNPTGTVIDRADIEQLIEMTPD--AIVVVDEAY 187
|
Length = 354 |
| >gnl|CDD|240391 PTZ00377, PTZ00377, alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 80/328 (24%), Positives = 123/328 (37%), Gaps = 76/328 (23%)
Query: 128 DIFVSDGAKCDISR-LQ-IVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKI 185
DIF++DGA I LQ ++ + + + P YP Y S+ I G Q Y
Sbjct: 140 DIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPLY--SAAIT-LLGGKQ---VPYYLD 193
Query: 186 EYMRCTAENGFFPDLSTVAR----------TDIIFFC-SPNNPTGAAATREQLTRLVQFA 234
E E G+ D + T +P NPTG TR+ + +++F
Sbjct: 194 E------EKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFC 247
Query: 235 KDNGSIIVYDSAYALYISDDNPRSI------FEIPGAKEVAIETSSF---SKYAGFT--- 282
+ G +++ D Y I D I E+P +E SF SK G
Sbjct: 248 YEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSK--GIIGEC 305
Query: 283 GVRLGW---TVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSP------- 332
G R G+ T IP E+ + K + + C N + GL C P
Sbjct: 306 GRRGGYFELTNIPPEVREQ----IYKLAS--INLCSNVVGQL--MTGLMCNPPREGDASY 357
Query: 333 EGFKAVHEVIGFY---KENTDIIVETFNSL-GFKVYGGKNAPYVWVQ--FPGRS------ 380
+K E + K +++ + N + G + A Y + + P ++
Sbjct: 358 PLYK--RERDAIFTSLKRRAELLTDELNKIEGVSCQPVEGAMYAFPRIELPEKAIQEAKE 415
Query: 381 ---SWDVFS--EILEKTHVVTTPGSGFG 403
+ DV E+LE T +V PGSGFG
Sbjct: 416 RGLAPDVLYCLELLESTGIVVVPGSGFG 443
|
Length = 481 |
| >gnl|CDD|177876 PLN02231, PLN02231, alanine transaminase | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 1e-04
Identities = 92/350 (26%), Positives = 142/350 (40%), Gaps = 59/350 (16%)
Query: 101 YGAEQGEKPLRAAIASTFYKDLGI--EEGDIFVSDGAKCDISRL-QIVFGSNVT-MAVQD 156
Y QG K LR AIA+ G + DIF++DGA + + Q++ S +
Sbjct: 164 YSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPI 223
Query: 157 PSYPAYVDSSVIMGQT--GEFQKDAEKYG-KIEYMRCTAENGFFPDLSTVARTDIIFFCS 213
P YP Y S + G T + +A +G +I ++ E+ ++ A I +
Sbjct: 224 PQYPLYSASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVI----N 279
Query: 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYA--LYISDDNPRSIFEIP-----GAK 266
P NPTG E +V+F K G +++ D Y +Y+ D S ++ G K
Sbjct: 280 PGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEK 339
Query: 267 EVAIET-SSFSK-YAGFTGVRLGWTVIPKELLFSDGF--PVAKDFNRIVCTCFNGASNIS 322
++++ + S SK Y G G R G+ + GF V + ++ N SNIS
Sbjct: 340 DISLVSFQSVSKGYYGECGKRGGYMEV-------TGFTSDVREQIYKVASV--NLCSNIS 390
Query: 323 QAGGLACLSPEGFKAVHEVIGFYKENTDIIV-----------ETFNSL-GFKVYGGKNAP 370
LA L K E Y D I+ + NSL G + A
Sbjct: 391 -GQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSLEGVTCNKAEGAM 449
Query: 371 YVW--VQFP---------GRSSWDVF--SEILEKTHVVTTPGSGFG--PG 405
Y++ + P +++ D F +L T +V PGSGFG PG
Sbjct: 450 YLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPG 499
|
Length = 534 |
| >gnl|CDD|179888 PRK04870, PRK04870, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 3e-04
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
Query: 208 IIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDD-NPRSIFEIPGAK 266
++F PNNPTG + R+++ A ++V D AY + D PR + P
Sbjct: 156 LVFLAYPNNPTGNLFDDADVERIIEAA---PGLVVVDEAYQPFAGDSWLPR-LARFPNL- 210
Query: 267 EVAIETSSFSKYAGFTGVRLGWTVIPKELL 296
+ + T SK G G+RLG+ +
Sbjct: 211 -LVMRT--VSKL-GLAGLRLGYLAGHPAWI 236
|
Length = 356 |
| >gnl|CDD|236444 PRK09275, PRK09275, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 3e-04
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 209 IFFC-SPNNPTGAAATREQLTRLVQF-AKDNGS-IIVYDSAYALYISDDNPRSIF-EIPG 264
F +P+NP A + E L ++ + +I+ D Y ++ D+ RS+F +P
Sbjct: 244 ALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFV--DDFRSLFAVLP- 300
Query: 265 AKEVAIETSSFSKYAGFTGVRLG 287
I SFSKY G TG RLG
Sbjct: 301 --YNTILVYSFSKYFGATGWRLG 321
|
Length = 527 |
| >gnl|CDD|163513 TIGR03801, asp_4_decarbox, aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 209 IFFC-SPNNPTGAAATREQLTRLVQF-AKDNGS-IIVYDSAYALYISDDNPRSIF-EIPG 264
F +P+NP A + E + ++V A D +I+ D Y ++ D+ RS+F E+P
Sbjct: 243 ALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFV--DDFRSLFAELP- 299
Query: 265 AKEVAIETSSFSKYAGFTGVRLGWTVIPKELLF 297
I SFSKY G TG RLG + K+ +F
Sbjct: 300 --YNTIGVYSFSKYFGATGWRLGTIALHKDNIF 330
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1) [Energy metabolism, Amino acids and amines]. Length = 521 |
| >gnl|CDD|178597 PLN03026, PLN03026, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 208 IIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKE 267
++F SPNNP G+ + + L ++++ ++V D AY + + + +
Sbjct: 178 LLFLTSPNNPDGSIISDDDLLKILELP----ILVVLDEAYIEFSTQ--ESRMKWVKKYDN 231
Query: 268 VAIETSSFSKYAGFTGVRLGWTVIPKELL 296
+ I +FSK AG G+R+G+ P ++
Sbjct: 232 L-IVLRTFSKRAGLAGLRVGYGAFPLSII 259
|
Length = 380 |
| >gnl|CDD|181255 PRK08153, PRK08153, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 8e-04
Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 42/158 (26%)
Query: 200 LSTVARTD--IIFFCSPNNPTGAAATREQLTRLVQFAKD--NGSIIVYDSAY-------- 247
L R + +++ +P+NP G+ +V F + +++V D AY
Sbjct: 148 LDAARRENAPLVYLANPDNPMGSWHPAA---DIVAFIEALPETTLLVLDEAYCETAPAGA 204
Query: 248 ALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDF 307
A I D+P I +FSK G G R+G+ + K F
Sbjct: 205 APPIDTDDPN-----------VIRMRTFSKAYGLAGARVGYAIGAPG--------TIKAF 245
Query: 308 NRIVCTCFN--GASNISQAGGLACLSPEGFKAVHEVIG 343
+++ N G + I+QA LA L + + + EV+G
Sbjct: 246 DKVR----NHFGMNRIAQAAALAALKDQAY--LAEVVG 277
|
Length = 369 |
| >gnl|CDD|240390 PTZ00376, PTZ00376, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.003
Identities = 39/155 (25%), Positives = 61/155 (39%), Gaps = 19/155 (12%)
Query: 142 LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEY----MRCTAENGFF 197
L+ + T+ V +P++P +V+ I G + Y + +G
Sbjct: 117 LKRFLPAGTTVYVSNPTWPNHVN---IFKSAGL------NVKEYRYYDPKTKGLDFDGML 167
Query: 198 PDLSTVARTDIIFF--CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN 255
DL T ++ C+ +NPTG T EQ + K I +D AY + S D
Sbjct: 168 EDLRTAPNGSVVLLHACA-HNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDL 226
Query: 256 PRSIFEIPGAKEVAIE---TSSFSKYAGFTGVRLG 287
+ + I E +E SFSK G G R+G
Sbjct: 227 DKDAYAIRLFAERGVEFLVAQSFSKNMGLYGERIG 261
|
Length = 404 |
| >gnl|CDD|236128 PRK07908, PRK07908, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.004
Identities = 38/178 (21%), Positives = 60/178 (33%), Gaps = 43/178 (24%)
Query: 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETS 273
P NPT EQL L + G I+V D A+A D +PG E
Sbjct: 148 PTNPTSVLHPAEQLLALRR----PGRILVVDEAFA-----D------AVPGEPESLAGDD 192
Query: 274 --------SFSKYAGFTGVRLGWTVIPKELL--FSDG---FPVAKDFNRIVCTCFNGASN 320
S +K G+R+G+ + ++L + G +PV
Sbjct: 193 LPGVLVLRSLTKTWSLAGLRVGYALGAPDVLARLTRGRAHWPV---------------GT 237
Query: 321 ISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPG 378
+ AC +P + +V ++G +V AP+V V+ P
Sbjct: 238 LQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRAVGARVVDPAAAPFVLVRVPD 295
|
Length = 349 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 433 | |||
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 100.0 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 100.0 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 100.0 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 100.0 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 100.0 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 100.0 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 100.0 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK09148 | 405 | aminotransferase; Validated | 100.0 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 100.0 | |
| PRK08068 | 389 | transaminase; Reviewed | 100.0 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 100.0 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07682 | 378 | hypothetical protein; Validated | 100.0 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 100.0 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 100.0 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 100.0 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06855 | 433 | aminotransferase; Validated | 100.0 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 100.0 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| PLN02187 | 462 | rooty/superroot1 | 100.0 | |
| PRK07683 | 387 | aminotransferase A; Validated | 100.0 | |
| PRK07337 | 388 | aminotransferase; Validated | 100.0 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 100.0 | |
| PRK08175 | 395 | aminotransferase; Validated | 100.0 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 100.0 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 100.0 | |
| PLN02656 | 409 | tyrosine transaminase | 100.0 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 100.0 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 100.0 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 100.0 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 100.0 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07324 | 373 | transaminase; Validated | 100.0 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 100.0 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 100.0 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 100.0 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 100.0 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 100.0 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 100.0 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 100.0 | |
| PRK07777 | 387 | aminotransferase; Validated | 100.0 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 100.0 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 100.0 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 100.0 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 100.0 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 100.0 | |
| PLN02231 | 534 | alanine transaminase | 100.0 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 100.0 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 100.0 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 100.0 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 100.0 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 100.0 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 100.0 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 100.0 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 100.0 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 100.0 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 100.0 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PLN02397 | 423 | aspartate transaminase | 100.0 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 100.0 | |
| PLN02368 | 407 | alanine transaminase | 100.0 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 100.0 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 100.0 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 100.0 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 100.0 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 100.0 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 100.0 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 100.0 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 100.0 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 100.0 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 100.0 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 100.0 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 100.0 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 100.0 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 100.0 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 100.0 | |
| PLN02822 | 481 | serine palmitoyltransferase | 100.0 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 100.0 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 100.0 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.98 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.98 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.97 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.97 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.97 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.97 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 99.97 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 99.97 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.97 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.97 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.96 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.96 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.96 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.96 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.96 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.96 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.96 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.96 | |
| PLN02721 | 353 | threonine aldolase | 99.96 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.96 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.96 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.96 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.96 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 99.96 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.96 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.96 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.96 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.96 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.95 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.95 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.95 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.95 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.95 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.95 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.95 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.95 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.95 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.95 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.95 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.95 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.95 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.95 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.94 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.94 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.94 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.94 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.94 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.94 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.93 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.93 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.93 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.93 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.93 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.93 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.93 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.92 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.92 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.92 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.92 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.92 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.92 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.91 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.91 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.91 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.91 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.91 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.91 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.91 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.91 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.91 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.9 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.9 | |
| PLN02651 | 364 | cysteine desulfurase | 99.9 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.9 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.9 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.9 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.9 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.89 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.89 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.89 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.89 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 99.89 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.89 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.89 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.89 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.89 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.88 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.88 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.88 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.88 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.88 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 99.87 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 99.87 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.87 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.87 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.87 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.87 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.87 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.87 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.87 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.86 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.86 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.86 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.86 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.86 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.85 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.85 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.85 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.85 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.84 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.84 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.84 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.84 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.84 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.84 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.83 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.83 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.83 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.82 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.82 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.82 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.82 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.82 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.82 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.81 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.81 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.81 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.81 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.81 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 99.81 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 99.81 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.81 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 99.81 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.81 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.8 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.8 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 99.8 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 99.8 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 99.8 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.8 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.8 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 99.8 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.79 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 99.79 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.78 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.78 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.78 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.77 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.77 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 99.77 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.77 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 99.76 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.76 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.75 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 99.75 | |
| PRK07678 | 451 | aminotransferase; Validated | 99.73 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 99.73 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.73 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 99.73 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.73 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.73 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 99.72 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.72 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 99.72 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.72 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.72 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 99.71 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.71 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 99.71 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 99.71 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.7 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 99.7 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.7 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.7 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.7 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.7 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 99.7 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.69 | |
| PRK06105 | 460 | aminotransferase; Provisional | 99.69 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.69 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 99.69 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.69 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.69 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.69 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.69 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.69 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.69 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 99.69 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.69 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 99.68 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 99.68 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 99.68 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 99.68 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.68 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.68 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.67 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 99.67 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.67 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.66 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 99.66 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 99.66 | |
| PRK07046 | 453 | aminotransferase; Validated | 99.66 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 99.65 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.65 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.65 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.65 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.65 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.64 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.64 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.64 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 99.63 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 99.63 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 99.62 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 99.62 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.62 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.62 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.61 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.61 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.6 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.6 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.59 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.59 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.59 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 99.58 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 99.57 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.56 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.55 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.55 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.55 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.54 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.54 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.53 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.53 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.53 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 99.52 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.52 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 99.51 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.51 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 99.51 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 99.48 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 99.46 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.45 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 99.45 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 99.44 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.43 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 99.42 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.39 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.39 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.39 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.37 | |
| PLN02263 | 470 | serine decarboxylase | 99.34 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.34 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 99.29 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.23 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.22 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 99.21 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 99.18 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 99.13 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 99.1 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 99.09 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 98.99 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.93 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.84 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 98.78 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 98.74 | |
| COG1725 | 125 | Predicted transcriptional regulators [Transcriptio | 98.68 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 98.64 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 98.57 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 98.51 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 98.41 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 98.4 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 98.38 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 98.37 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 98.34 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 98.13 | |
| PF00392 | 64 | GntR: Bacterial regulatory proteins, gntR family; | 98.12 | |
| COG2186 | 241 | FadR Transcriptional regulators [Transcription] | 97.96 | |
| COG2188 | 236 | PhnF Transcriptional regulators [Transcription] | 97.9 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 97.89 | |
| PRK14999 | 241 | histidine utilization repressor; Provisional | 97.89 | |
| TIGR02325 | 238 | C_P_lyase_phnF phosphonates metabolism transcripti | 97.88 | |
| TIGR02404 | 233 | trehalos_R_Bsub trehalose operon repressor, B. sub | 97.85 | |
| TIGR02018 | 230 | his_ut_repres histidine utilization repressor, pro | 97.82 | |
| PRK09764 | 240 | DNA-binding transcriptional repressor MngR; Provis | 97.8 | |
| PRK11402 | 241 | DNA-binding transcriptional regulator FrlR; Provis | 97.79 | |
| PRK04984 | 239 | fatty acid metabolism regulator; Provisional | 97.76 | |
| PRK09990 | 251 | DNA-binding transcriptional regulator GlcC; Provis | 97.68 | |
| TIGR02812 | 235 | fadR_gamma fatty acid metabolism transcriptional r | 97.68 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 97.66 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 97.62 | |
| PRK11523 | 253 | DNA-binding transcriptional repressor ExuR; Provis | 97.62 | |
| PRK09464 | 254 | pdhR transcriptional regulator PdhR; Reviewed | 97.62 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 97.61 | |
| PRK10079 | 241 | phosphonate metabolism transcriptional regulator P | 97.58 | |
| PRK10421 | 253 | DNA-binding transcriptional repressor LldR; Provis | 97.58 | |
| PRK03837 | 241 | transcriptional regulator NanR; Provisional | 97.55 | |
| PRK10225 | 257 | DNA-binding transcriptional repressor UxuR; Provis | 97.55 | |
| TIGR03337 | 231 | phnR transcriptional regulator protein. This famil | 97.17 | |
| PRK11414 | 221 | colanic acid/biofilm transcriptional regulator; Pr | 97.11 | |
| KOG2790 | 370 | consensus Phosphoserine aminotransferase [Coenzyme | 97.08 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 96.92 | |
| PRK11534 | 224 | DNA-binding transcriptional regulator CsiR; Provis | 96.85 | |
| smart00345 | 60 | HTH_GNTR helix_turn_helix gluconate operon transcr | 96.74 | |
| TIGR03338 | 212 | phnR_burk phosphonate utilization associated trans | 96.62 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 96.28 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 96.13 | |
| PF14502 | 48 | HTH_41: Helix-turn-helix domain | 95.85 | |
| COG1802 | 230 | GntR Transcriptional regulators [Transcription] | 95.43 | |
| cd07377 | 66 | WHTH_GntR Winged helix-turn-helix (WHTH) DNA-bindi | 91.47 | |
| COG1737 | 281 | RpiR Transcriptional regulators [Transcription] | 87.74 | |
| PF02796 | 45 | HTH_7: Helix-turn-helix domain of resolvase; Inter | 84.54 | |
| PF13730 | 55 | HTH_36: Helix-turn-helix domain | 81.39 | |
| PRK12423 | 202 | LexA repressor; Provisional | 80.63 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 80.44 |
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-62 Score=477.81 Aligned_cols=406 Identities=23% Similarity=0.333 Sum_probs=336.0
Q ss_pred ccccccccccccccccCCChhhHHHHHhccccccc---cccCC-CCCCcHHHHH-----------HHHHHH--hcCCCCc
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGN---LGKLQ-AGYLFPEIAR-----------RKAAHM--LKYPDAE 64 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~---~~~l~-~g~~~~~~~~-----------~~~~~~--~~~~~~~ 64 (433)
++++.+|.+|+|++|+||||+|+||+.++||++|+ |..+. +||+.+++++ ...... .....+.
T Consensus 11 ~~i~~~I~~g~l~~g~rLPs~R~la~~l~vs~~Tv~~ay~~L~~~G~i~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (459)
T COG1167 11 EQLREAILSGRLKPGDRLPSIRQLAQDLGVSRSTVSRAYEELEARGYIESRPGSAPPSGRPVRLELLKPSDPELLEDDPS 90 (459)
T ss_pred HHHHHHHHcCCCCCCCcCCcHHHHHHHhCCcHHHHHHHHHHHHhCcceeeccCCCcccccccccchhhhhhcccccCCCc
Confidence 57899999999999999999999999999999996 55554 4898887642 100000 0012257
Q ss_pred eEEecCCCCCC-CChHHHHH-HHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHh--ccCCCCCCcEEEcCChHHHHH
Q 045431 65 VISLGIGDTTE-PIPEVITS-ALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFY--KDLGIEEGDIFVSDGAKCDIS 140 (433)
Q Consensus 65 ~i~l~~g~~~~-~~~~~~~~-a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~--~~~~~~~~~i~~~~G~~~al~ 140 (433)
+++|+.|.|+. .+|...++ ++.+.+..... .....|++..|.++||+++++++. +++.+++++|++|+|++++++
T Consensus 91 ~i~f~~g~p~~~~fp~~~~~~~~~~~~~~~~~-~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al~ 169 (459)
T COG1167 91 VIDFAGGLPDPSLFPLEALRRALARVLRNYGA-SLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQALD 169 (459)
T ss_pred eecCCCCCCCcccCCHHHHHHHHHHHHhhcch-hhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHHH
Confidence 89999998753 35555554 44444443321 226688888999999999999997 488899999999999999999
Q ss_pred HH-HHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC---CCCccEEEEc-CC
Q 045431 141 RL-QIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST---VARTDIIFFC-SP 214 (433)
Q Consensus 141 ~l-~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~i~l~-~p 214 (433)
++ ..+++|||+|++++|+|++...+++.+| .+++.+|+|++ +++++ ++. ..++|++|++ +.
T Consensus 170 l~~~~l~~pGd~v~vE~PtY~~~~~~~~~~g------------~~~~~vp~d~~-G~~~e~le~~~~~~~~k~~y~~P~~ 236 (459)
T COG1167 170 LLLRLLLDPGDTVLVEDPTYPGALQALEALG------------ARVIPVPVDED-GIDPEALEEALAQWKPKAVYVTPTF 236 (459)
T ss_pred HHHHHhCCCCCEEEEcCCCcHHHHHHHHHcC------------CcEEecCCCCC-CCCHHHHHHHHhhcCCcEEEECCCC
Confidence 85 7778999999999999999999999999 58999999855 55544 333 2369998887 67
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccceeeeeccc
Q 045431 215 NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPK 293 (433)
Q Consensus 215 ~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~ 293 (433)
|||||.+||.+++++|+++|++||++|||||+|+++.+++. +.++..++. +++|||++||||+++ ||+|+||+++|+
T Consensus 237 qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~-~~rViy~gSFSK~l~-PglRlG~vv~p~ 314 (459)
T COG1167 237 QNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDA-PGRVIYLGSFSKTLA-PGLRLGYVVAPP 314 (459)
T ss_pred CCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCC-CCCEEEEeeehhhcc-cccceeeeeCCH
Confidence 99999999999999999999999999999999999999865 456777765 689999999999995 999999999999
Q ss_pred cccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-hHHHHHHHHHHHHHHHHHHHHhhc---CCeeecCCCc
Q 045431 294 ELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-KAVHEVIGFYKENTDIIVETFNSL---GFKVYGGKNA 369 (433)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~---g~~~~~~~~g 369 (433)
+++ +.+.+.+.....+++.++|.+....+.++.+ +|++++++.|+++++.+.+.|+++ +..+..|.+|
T Consensus 315 ~~~--------~~~~~~k~~~~~~~s~~~Q~~la~~l~~G~~~~hl~~lR~~y~~rr~~l~~~L~~~~~~~~~~~~p~gG 386 (459)
T COG1167 315 ELI--------EKLLRLKQAADLGPSSLSQAALAAFLLSGHYDRHLRRLRREYARRRDALLEALAEYLPELATWTRPEGG 386 (459)
T ss_pred HHH--------HHHHHHHHHhcCCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeecCCce
Confidence 985 7888888888889999999999999985444 799999999999999999999997 3678888999
Q ss_pred cEEEEECCC-CChHHHHHHHHHcCCeEecC-CCCCCCCC--CCeEEEeecc-ChhHHHHHHHHHHHhh
Q 045431 370 PYVWVQFPG-RSSWDVFSEILEKTHVVTTP-GSGFGPGG--EGFIRVSAFG-HRGNVLEACKRFKHLY 432 (433)
Q Consensus 370 ~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~-g~~f~~~~--~~~iRi~~~~-~~~~l~~~l~~l~~~l 432 (433)
+|+|++++. .+..+++..++++ ||.+.| |..|...+ .+++||+++. +++++++++++|.+++
T Consensus 387 ~flwl~l~~~~~~~~l~~~a~~~-gv~i~~~g~~f~~~~~~~~~~Rl~~s~~~~e~i~~gi~~l~~~~ 453 (459)
T COG1167 387 LFLWLELPEGIDARELLAAALEK-GVVVTPLGSAFSADGDPRNGLRLSFSSPSEEEIEEGIKRLAALL 453 (459)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHC-CCEEEcCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 999999994 5677777777665 999999 99987543 5689999865 7999999999998875
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-60 Score=449.79 Aligned_cols=346 Identities=33% Similarity=0.535 Sum_probs=308.0
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCc-EEEcCChHHHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGD-IFVSDGAKCDI 139 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~-i~~~~G~~~al 139 (433)
.++|+|+.|+|+++.|+.+.+++.+++... .. .|++..|.++||++|++++.+ ++.+++++ |++|+|+++++
T Consensus 28 ~~vi~l~iG~Pd~~~p~~i~~a~~~a~~~~----~~-~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al 102 (393)
T COG0436 28 EDVIDLSIGEPDFPTPEHIIEAAIEALEEG----GT-HYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEAL 102 (393)
T ss_pred CCEEEeCCCCCCCCCCHHHHHHHHHHHhcc----cC-CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHH
Confidence 469999999999999999999999998752 22 777999999999999999997 55567766 99999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCcc-CCcccCCCC-----CCCccEEEEc
Q 045431 140 SR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAE-NGFFPDLST-----VARTDIIFFC 212 (433)
Q Consensus 140 ~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~i~l~ 212 (433)
.+ +.++++|||+|++++|.|+.|......+| ..++.++.+.+ .+|.++++. ++++|+|+++
T Consensus 103 ~~~~~a~~~pGDeVlip~P~Y~~y~~~~~~~g------------g~~v~v~l~~~~~~f~~d~~~l~~~i~~ktk~i~ln 170 (393)
T COG0436 103 FLAFLALLNPGDEVLIPDPGYPSYEAAVKLAG------------GKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILN 170 (393)
T ss_pred HHHHHHhcCCCCEEEEeCCCCcCHHHHHHhcC------------CEEEEEeCCcCccCCcCCHHHHHhhcCccceEEEEe
Confidence 97 68899999999999999999999999999 58888887654 477777542 4689999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccceeeeec
Q 045431 213 SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVI 291 (433)
Q Consensus 213 ~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~ 291 (433)
+||||||.+++++++++|+++|++|+++||.||+|.++.+++. +.++.++....+++|+++||||+++++|||+||+++
T Consensus 171 ~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~ 250 (393)
T COG0436 171 SPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVVG 250 (393)
T ss_pred CCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccccccceeEeec
Confidence 9999999999999999999999999999999999999999984 778887765468899999999999999999999999
Q ss_pred c-ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-hHHHHHHHHHHHHHHHHHHHHhhc-CCeeec-CC
Q 045431 292 P-KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-KAVHEVIGFYKENTDIIVETFNSL-GFKVYG-GK 367 (433)
Q Consensus 292 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~-~~ 367 (433)
+ ++++ +.+..+......+++.++|.++.++|+.... ..++.+++.|++||+.+.+.|.+. |+.+.. |.
T Consensus 251 ~~~~l~--------~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~~g~~~~~~p~ 322 (393)
T COG0436 251 PPEELI--------AALRKLKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIGGLSVVKPPE 322 (393)
T ss_pred ChHHHH--------HHHHHHHHhcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccCCC
Confidence 9 5554 6677777888888999999999999996543 567888899999999999999988 598887 78
Q ss_pred CccEEEEECCC-CChHHHHHHHHHcCCeEecCCCCCCCC-CCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 368 NAPYVWVQFPG-RSSWDVFSEILEKTHVVTTPGSGFGPG-GEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 368 ~g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~~~-~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
+++|+|++++. .++.++...|++++||.+.||..|+.. +.++|||+++.+.+++++++++|.++++
T Consensus 323 Ga~Y~~~~i~~~~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~~~~~~~l~~a~~rl~~~~~ 390 (393)
T COG0436 323 GAFYLFPKIPELLDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLATSEETLEEALRRLARFLA 390 (393)
T ss_pred eeEEEEeecCCCCCHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEEEecCHHHHHHHHHHHHHHHH
Confidence 99999999995 688999999999999999999999985 8999999998888999999999998763
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-59 Score=456.96 Aligned_cols=398 Identities=17% Similarity=0.177 Sum_probs=316.0
Q ss_pred ccccccccccccccccCCChhhHHHHHhccccccc---cccCC-CCCCcHHHHHHHHH--------HHhcCCCCceEEec
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGN---LGKLQ-AGYLFPEIARRKAA--------HMLKYPDAEVISLG 69 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~---~~~l~-~g~~~~~~~~~~~~--------~~~~~~~~~~i~l~ 69 (433)
++++++|.+|+|++|+||||+|+||+.++|||+|+ |..|. +|++....+++... ......+..+++|+
T Consensus 12 ~~i~~~i~~g~l~~g~~lps~r~la~~~~vsr~tv~~a~~~L~~~g~i~~~~~~G~~v~~~~~~~~~~~~~~~~~~i~L~ 91 (431)
T PRK15481 12 DSIRQLIQAGRLRPGDSLPPVRELASELGVNRNTVAAAYKRLVTAGLAQSQGRNGTVIRGSPSPVALEGGDPGTPLHDLA 91 (431)
T ss_pred HHHHHHHHcCCCCCCCcCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCCceEEccCcchhhhcccCCcchhhhhh
Confidence 56889999999999999999999999999999996 33332 35554432211100 00011223578999
Q ss_pred CCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCC
Q 045431 70 IGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGS 148 (433)
Q Consensus 70 ~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~ 148 (433)
.|.|+.+.++.+.+++.+... ....|+++.|.++||+++++|+.+..+ ++++|++|+|+++++.+ +..+++|
T Consensus 92 ~g~p~~~~~p~~~~~~~~~~~------~~~~Y~~~~g~~~lr~~ia~~~~~~~~-~~~~Iiit~G~~~al~~~~~~l~~p 164 (431)
T PRK15481 92 GGNPDPQRLPDLSRYFARLSR------TPRLYGDAPVSPELHAWAARWLRDDCP-VAFEIDLTSGAIDAIERLLCAHLLP 164 (431)
T ss_pred cCCCChhHhHHHHHHHHHhhh------hhhhcCCcCCCHHHHHHHHHHHhhccC-CcCeEEEecCcHHHHHHHHHHhCCC
Confidence 999877666667777766543 235798899999999999999865332 45799999999999997 5788899
Q ss_pred CCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEEEEc-CCCCccccCCCH
Q 045431 149 NVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIFFC-SPNNPTGAAATR 224 (433)
Q Consensus 149 gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~-~p~nPtG~~~~~ 224 (433)
||.|++++|+|+.+...++.+| .+++.++.+.+ ++..+ +++ ..++++++++ |||||||.++|.
T Consensus 165 gd~Vlv~~P~y~~~~~~~~~~g------------~~~~~v~~~~~-g~~~~~l~~~~~~~~k~i~~~p~p~NPTG~~~s~ 231 (431)
T PRK15481 165 GDSVAVEDPCFLSSINMLRYAG------------FSASPVSVDAE-GMQPEKLERALAQGARAVILTPRAHNPTGCSLSA 231 (431)
T ss_pred CCEEEEeCCCcHHHHHHHHHcC------------CeEEeeccCCC-CCCHHHHHHHHhcCCCEEEECCCCCCCCCccCCH
Confidence 9999999999999999999999 47888888644 44332 222 2478999998 999999999999
Q ss_pred HHHHHHHHHHHHc-CCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcch
Q 045431 225 EQLTRLVQFAKDN-GSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPV 303 (433)
Q Consensus 225 ~~~~~i~~~a~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~ 303 (433)
+++++|+++|++| +++||+||+|.++.+++.+ +.... ..+++|+++||||++| ||+|+||++++++++
T Consensus 232 ~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~-~~~~~--~~~~vi~~~SfSK~~~-~GlRiG~~i~~~~~~------- 300 (431)
T PRK15481 232 RRAAALRNLLARYPQVLVIIDDHFALLSSSPYH-SVIPQ--TTQRWALIRSVSKALG-PDLRLAFVASDSATS------- 300 (431)
T ss_pred HHHHHHHHHHHhcCCceEEecCchhhhccCCCC-CCCcC--CCCCEEEEeeeccccC-CCceeEEEeCCHHHH-------
Confidence 9999999999999 9999999999998765432 22222 2468999999999999 999999999998875
Q ss_pred hHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-hHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCCCChH
Q 045431 304 AKDFNRIVCTCFNGASNISQAGGLACLSPEGF-KAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSW 382 (433)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~ 382 (433)
+.+.........+++.++|.++.++|++..+ +|++++++.++++++.+.+.|+++|+.+..|.+|+|+|++++. +..
T Consensus 301 -~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~~~~~~~~p~gg~f~~~~l~~-~~~ 378 (431)
T PRK15481 301 -ARLRLRLNSGTQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARALQQYGIAIPSPGDGLNLWLPLDT-DSQ 378 (431)
T ss_pred -HHHHHHHhccccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCeEEEEEECCC-CHH
Confidence 6665544444455899999999999987654 6789999999999999999999998888778899999999984 455
Q ss_pred HHHHHHHHcCCeEecCCCCCCCC-CCCeEEEeecc-ChhHHHHHHHHHHHhhC
Q 045431 383 DVFSEILEKTHVVTTPGSGFGPG-GEGFIRVSAFG-HRGNVLEACKRFKHLYK 433 (433)
Q Consensus 383 ~~~~~l~~~~gi~v~~g~~f~~~-~~~~iRi~~~~-~~~~l~~~l~~l~~~l~ 433 (433)
++...+. ++||.+.||..|+.. ..+++||+++. +++++++++++|++++.
T Consensus 379 ~~~~~l~-~~gV~v~pg~~f~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~~~ 430 (431)
T PRK15481 379 ATALTLA-KSGWLVREGEAFGVSAPSHGLRITLSTLNDAEINRLAADLHQALN 430 (431)
T ss_pred HHHHHHH-HCCcEEecCCccccCCCCCeEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 6666665 569999999999643 34689999875 78999999999999874
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-58 Score=443.71 Aligned_cols=397 Identities=51% Similarity=0.872 Sum_probs=321.7
Q ss_pred ccccccCCCCCCcHHHHHHHHHHHhcCCCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHH
Q 045431 34 NGNLGKLQAGYLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAA 113 (433)
Q Consensus 34 ~t~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ 113 (433)
|..|..+..+|.+.++..+......++.++++++|+.|+|++++|+.+.+++.+++.+.........|+++.|.++||++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~a 84 (409)
T PRK07590 5 NENYLKLKAGYLFPEIARRVNAFREANPEAKIIRLGIGDVTQPLPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREK 84 (409)
T ss_pred ccccCccCCcchHHHHHHHHHHHhhhcCCCceEEecCcCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHH
Confidence 34567777788888887776666666656679999999999999999999999888753211245689999999999999
Q ss_pred HHHHHhc--cCCCCCCcEEEcCChHHHHHHHHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecC
Q 045431 114 IASTFYK--DLGIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCT 191 (433)
Q Consensus 114 la~~l~~--~~~~~~~~i~~~~G~~~al~~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 191 (433)
+|+|+.+ ++++++++|++|+|+++++.++..++.+||+|++++|+|+.+...++..|..++.. ....|.+++.++.+
T Consensus 85 ia~~~~~~~g~~~~~~~I~it~Ga~~al~~l~~~~~~gd~V~v~~P~Y~~~~~~~~~~g~~~~~~-~~~~~~~~~~v~~~ 163 (409)
T PRK07590 85 IAENDYQARGCDISADEIFISDGAKCDTGNILDIFGPDNTIAVTDPVYPVYVDTNVMAGRTGEAN-EDGRYSGIVYLPCT 163 (409)
T ss_pred HHHHHHHhcCCcCChhhEEECCCHHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHHHcCCccccc-ccccccceeEeecc
Confidence 9999864 77889999999999999999877778999999999999999999999999653311 11112348888887
Q ss_pred ccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceE
Q 045431 192 AENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAI 270 (433)
Q Consensus 192 ~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi 270 (433)
.++++..++.. .++++|++||||||||.++|.+++++|+++|++|+++||+||+|.++.+++. +.++.+++...+++|
T Consensus 164 ~~~~~~~d~~~-~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi 242 (409)
T PRK07590 164 AENNFVPELPE-EKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAI 242 (409)
T ss_pred cccCCcccCcc-cCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceE
Confidence 66667666544 6899999999999999999999999999999999999999999999887654 456666655456899
Q ss_pred EEecccccccccccceeeeeccccccccC----CcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHH
Q 045431 271 ETSSFSKYAGFTGVRLGWTVIPKELLFSD----GFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYK 346 (433)
Q Consensus 271 ~i~S~sK~~~~~G~r~G~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 346 (433)
+++||||++|+||+|+||++++++++... .......+.........+++.++|.++..++.+.+..+++++++.++
T Consensus 243 ~~~SfSK~~~~pGlRiG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~ 322 (409)
T PRK07590 243 EFRSFSKTAGFTGTRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEGKAQIKELIDYYM 322 (409)
T ss_pred EEecCccccCCcCceeEEEEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 99999999999999999999999886210 00000112222222334578899999988887655678999999999
Q ss_pred HHHHHHHHHHhhcCCeeecCCCccEEEEECCC-CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHH
Q 045431 347 ENTDIIVETFNSLGFKVYGGKNAPYVWVQFPG-RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEAC 425 (433)
Q Consensus 347 ~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l 425 (433)
++++.+.+.|+++|+.+..+.+|+|+|+++++ .++.++...+++++||.+.||+.|+..+.+++||+++.+++++++++
T Consensus 323 ~~r~~l~~~L~~~~~~~~~~~g~~f~wi~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~l 402 (409)
T PRK07590 323 ENAKIIREGLESAGFEVYGGVNAPYIWVKTPDGMSSWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLSAFGSRENVLEAM 402 (409)
T ss_pred HHHHHHHHHHHhcCCceecCCcceEEEEECCCCCCHHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEEccCCHHHHHHHH
Confidence 99999999999998888878899999999984 45677788888778999999999987667899999877899999999
Q ss_pred HHHHHhh
Q 045431 426 KRFKHLY 432 (433)
Q Consensus 426 ~~l~~~l 432 (433)
++|++++
T Consensus 403 ~rl~~~~ 409 (409)
T PRK07590 403 ERIKKAL 409 (409)
T ss_pred HHHHhhC
Confidence 9999864
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-56 Score=430.59 Aligned_cols=399 Identities=53% Similarity=0.936 Sum_probs=320.9
Q ss_pred ccccccccCCCCCCcHHHHHHHHHHHhcCCCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHH
Q 045431 32 SRNGNLGKLQAGYLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLR 111 (433)
Q Consensus 32 s~~t~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr 111 (433)
.||.++.+++.++++..+...........++.++|+|+.|+|++++++.+.+++.+.+.+.........|++..|.++||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr 81 (402)
T TIGR03542 2 KRNPHFLKLKSSYLFSEINRRVNEFRKKHPSADIIRLGIGDTTQPLPASVIEAFHNAVDELASEETFRGYGPEQGYPFLR 81 (402)
T ss_pred ccCCCccccCcchHHHHHHHHHHHHHhccCCCCeEEcCCCCCCCCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHH
Confidence 46788888888888887766655554444567899999999998889999999998887532212345798889999999
Q ss_pred HHHHHHHhccCCCCCCcEEEcCChHHHHHHHHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecC
Q 045431 112 AAIASTFYKDLGIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCT 191 (433)
Q Consensus 112 ~~la~~l~~~~~~~~~~i~~~~G~~~al~~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 191 (433)
+++|+++.+. ++++++|++|+|+++++.++..++.+||+|++++|+|+.+...++..|..++....+. +.+++.++.+
T Consensus 82 ~aia~~~~~~-~~~~d~I~it~Ga~~al~~l~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~-~~~~~~v~~~ 159 (402)
T TIGR03542 82 EAIAENDYRG-RIDPEEIFISDGAKCDVFRLQSLFGSDNTVAVQDPVYPAYVDSNVMAGRAGVLDDDGR-YSKITYLPCT 159 (402)
T ss_pred HHHHHHHHhc-CCCHHHEEECCCcHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHHHcCCccccccccc-cceEEEeecc
Confidence 9999987542 3789999999999999998777789999999999999999999999996444322211 2267778876
Q ss_pred ccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceE
Q 045431 192 AENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAI 270 (433)
Q Consensus 192 ~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi 270 (433)
.++++..++....++++|+++|||||||.++|.+++++|+++|++|+++||+||+|.++.+++. +.++.+++...+++|
T Consensus 160 ~~~~~~~~~~~~~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi 239 (402)
T TIGR03542 160 KENNFIPDLPEEPKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAI 239 (402)
T ss_pred hhhCCCCCccccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEE
Confidence 5556666665446889999999999999999999999999999999999999999999887653 455666655456899
Q ss_pred EEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHH
Q 045431 271 ETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTD 350 (433)
Q Consensus 271 ~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 350 (433)
+++||||.+|+||+|+||++++++++..........+.........+++.++|.++..++.+....++.+.++.++++++
T Consensus 240 ~~~SfSK~~g~pGlRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 319 (402)
T TIGR03542 240 EFRSFSKTAGFTGVRLGWTVVPKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEGLQPILEAISYYMENAR 319 (402)
T ss_pred EEecCccccCCCCcceEEEEecHHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcchhHHHHHHHHHHHHHH
Confidence 99999999999999999999998874221111123333323333445788999998888886655667778899999999
Q ss_pred HHHHHHhhcCCeeecCCCccEEEEECCC-CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHH
Q 045431 351 IIVETFNSLGFKVYGGKNAPYVWVQFPG-RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFK 429 (433)
Q Consensus 351 ~l~~~l~~~g~~~~~~~~g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~ 429 (433)
.+.+.|++.|+.+.++.+|+|+|++++. .++.+++..+++++||.+.||+.|+..+.+++||+++.+++++++++++|+
T Consensus 320 ~~~~~L~~~~~~~~~~~~~~f~~v~l~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~l~~~l~~l~ 399 (402)
T TIGR03542 320 ILRKALEAAGFKVYGGEHAPYLWVKTPEGISSWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFSAFGKRENIVEACERIK 399 (402)
T ss_pred HHHHHHHhcCceecCCCceeEEEEECCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHH
Confidence 9999999988888777889999999984 466788888887789999999999766678999998779999999999999
Q ss_pred Hhh
Q 045431 430 HLY 432 (433)
Q Consensus 430 ~~l 432 (433)
++|
T Consensus 400 ~~~ 402 (402)
T TIGR03542 400 EAL 402 (402)
T ss_pred hhC
Confidence 875
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-55 Score=420.33 Aligned_cols=347 Identities=24% Similarity=0.415 Sum_probs=288.3
Q ss_pred CCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCC-cEEEcCChHH
Q 045431 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEG-DIFVSDGAKC 137 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~-~i~~~~G~~~ 137 (433)
.+.++|+|+.|++++++|+.+.+++.+.+.. ....+|++..|.++||+++|+|+.+ +++++++ +|++|+|+++
T Consensus 28 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~ 103 (388)
T PRK07366 28 AGKELIDLSLGSSDLPAPAHALEAIAQSLHD----PSTHGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQE 103 (388)
T ss_pred cCCCeEEeCCCCCCCCCCHHHHHHHHHHHhC----cccCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHH
Confidence 3456899999999998899999999887753 3456798889999999999999975 6778888 6999999999
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEE
Q 045431 138 DISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFF 211 (433)
Q Consensus 138 al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l 211 (433)
++.+ +..++++||.|++++|+|+.+...++..| .+++.++.+.++++..+++. ..+++++++
T Consensus 104 al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l 171 (388)
T PRK07366 104 GTAHLPLAVLNPGDFALLLDPGYPSHAGGVYLAG------------GQIYPMPLRAENDFLPVFADIPTEVLAQARLMVL 171 (388)
T ss_pred HHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcC------------CEEEEEECCCccCCCCCHHHHHHhhcccceEEEE
Confidence 9997 47788999999999999999999999999 48888998766666555332 257899999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCcccccCCCCcceEEEecccccccccccceeee
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN--PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWT 289 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l 289 (433)
+|||||||.++|.+++++|+++|++|+++||+||+|.++.+++. +.++.+++...+++|+++||||++|+||+|+||+
T Consensus 172 ~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~ 251 (388)
T PRK07366 172 SYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGGFRIGFA 251 (388)
T ss_pred eCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcchhheeh
Confidence 99999999999999999999999999999999999999987653 3456666543457899999999999999999999
Q ss_pred eccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCc
Q 045431 290 VIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNA 369 (433)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g 369 (433)
+++++++ +.+.+.......+.+...|.++.+.+.. ..+++++.++.++++++.+.+.|+++|+.+..|.+|
T Consensus 252 v~~~~li--------~~l~~~~~~~~~~~~~~~~~~a~~~l~~-~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~g 322 (388)
T PRK07366 252 IGNAQLI--------QALRQVKAVVDFNQYRGILNGAIAALTG-PQATVQQTVQIFRQRRDAFINALHQIGWPVPLPEAT 322 (388)
T ss_pred cCCHHHH--------HHHHHHHhhcccCCCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCee
Confidence 9998885 6666655544433333334445555542 346889999999999999999999988887778899
Q ss_pred cEEEEECCCC---ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 370 PYVWVQFPGR---SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 370 ~~~~~~~~~~---~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+|+|++++.. ++.++...+++++||.+.||+.|+..+.+++||+++.+.+++++++++|++++
T Consensus 323 ~f~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~l~rl~~~l 388 (388)
T PRK07366 323 MYVWAKLPEPWQGNSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFALVHDPDILEEAVERIAAFL 388 (388)
T ss_pred EEEEEECCcccCCCHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEecCCHHHHHHHHHHHHHhC
Confidence 9999999842 45677778877889999999999765678999999888999999999999864
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-54 Score=415.45 Aligned_cols=344 Identities=24% Similarity=0.351 Sum_probs=295.0
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCC-cEEEcCChHHHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEG-DIFVSDGAKCDI 139 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~-~i~~~~G~~~al 139 (433)
.++|+|+.|.|++++|+.+.+++.+.+.+ ....|++..|.++||+++++++.+ ++.++++ +|++|+|+++++
T Consensus 54 ~~~i~l~~G~P~~~~~~~~~~~~~~~~~~-----~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al 128 (413)
T PLN00175 54 HGAINLGQGFPNFDGPDFVKEAAIQAIRD-----GKNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAI 128 (413)
T ss_pred CCeEecCCCCCCCCCCHHHHHHHHHHHhc-----CCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHH
Confidence 36899999999988899999999888763 346899999999999999999985 6667787 799999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC---CCC--CCCccEEEEcC
Q 045431 140 SR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD---LST--VARTDIIFFCS 213 (433)
Q Consensus 140 ~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~i~l~~ 213 (433)
.+ +..+++|||+|++++|+|+.+...++..| .+++.++.+.++ +..+ +++ .+++++|+++|
T Consensus 129 ~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g------------~~~~~v~~~~~~-~~~~~~~l~~~~~~~~k~i~i~~ 195 (413)
T PLN00175 129 AATILGLINPGDEVILFAPFYDSYEATLSMAG------------AKIKTVTLRPPD-FAVPEDELKAAFTSKTRAILINT 195 (413)
T ss_pred HHHHHHhCCCCCEEEEeCCCchhHHHHHHHcC------------CEEEEEECCccc-CCCCHHHHHHhcCcCceEEEecC
Confidence 87 57788999999999999999999999999 478888886542 3333 222 35789999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccc
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPK 293 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~ 293 (433)
||||||.++|.+++++|+++|++|+++||+||+|.++.+++.+.++.++++..+++|+++||||.|+++|+|+||+++++
T Consensus 196 p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G~RiG~~v~~~ 275 (413)
T PLN00175 196 PHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPP 275 (413)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEEEEecchhhccCcchheeeeEeCH
Confidence 99999999999999999999999999999999999988876555676776556789999999999999999999999999
Q ss_pred cccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEE
Q 045431 294 ELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVW 373 (433)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~ 373 (433)
+++ +.+.........+++.+.|.++.++|++. ..++++.++.|+++++.+.+.|+++|+.+..|.+|+|+|
T Consensus 276 ~l~--------~~l~~~~~~~~~~~s~~~Q~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p~g~~f~~ 346 (413)
T PLN00175 276 HLT--------WGVRQAHSFLTFATATPMQWAAVAALRAP-ESYYEELKRDYSAKKDILVEGLKEVGFKVYPSSGTYFVM 346 (413)
T ss_pred HHH--------HHHHHHHhhccCCCCHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCeeEEEE
Confidence 885 66766666566778999999999999753 568899999999999999999999999988888999999
Q ss_pred EECC--CC-ChHHHHHHHHHcCCeEecCCCCCCC---CCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 374 VQFP--GR-SSWDVFSEILEKTHVVTTPGSGFGP---GGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 374 ~~~~--~~-~~~~~~~~l~~~~gi~v~~g~~f~~---~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
++++ +. ++.++...+++++||.+.||..|+. .+.+++||+++.+++++++++++|+++++
T Consensus 347 ~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~~~~e~l~~~~~rL~~~~~ 412 (413)
T PLN00175 347 VDHTPFGFENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFCKDEETLRAAVERMKTKLK 412 (413)
T ss_pred EeccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 9985 33 4578888888888999999999863 24679999998899999999999998864
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-53 Score=413.61 Aligned_cols=343 Identities=26% Similarity=0.480 Sum_probs=292.7
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCC-CcEEEcCChHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEE-GDIFVSDGAKCD 138 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~-~~i~~~~G~~~a 138 (433)
+.++|+|+.|+|++++++.+.+++.+.+.. .....|. ..|.++||++||+|+.+ ++.+++ ++|++|+|++++
T Consensus 31 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~----~~~~~y~-~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~a 105 (399)
T PRK07681 31 GHKMIDLSIGNPDMPPADFVREEMVHTANQ----KESYGYT-LSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDG 105 (399)
T ss_pred CCCeEEeCCCCCCCCCCHHHHHHHHHHHhc----cccCCCC-CCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHH
Confidence 457999999999988888888888887653 2234564 58999999999999975 677888 899999999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEEc
Q 045431 139 ISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFFC 212 (433)
Q Consensus 139 l~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~ 212 (433)
+.+ +..++++||.|++++|+|+.+...++..| .+++.++.+.++++..+++. .+++++|+++
T Consensus 106 l~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G------------~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~ 173 (399)
T PRK07681 106 LVHLPMVYANPGDIILVPDPGYTAYETGIQMAG------------ATSYYMPLKKENDFLPDLELIPEEIADKAKMMILN 173 (399)
T ss_pred HHHHHHHhCCCCCEEEECCCCccchHHHHHhcC------------CEEEEEecCCCCCCcCCHHHHHHhccccceEEEEe
Confidence 997 57788999999999999999999999999 58888998766566554332 2578999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccceeeeec
Q 045431 213 SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVI 291 (433)
Q Consensus 213 ~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~ 291 (433)
|||||||.++|.+++++|+++|++|+++||+||+|.++.+++. +.++.+++...+++|+++||||.+|++|+|+||+++
T Consensus 174 ~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~i~ 253 (399)
T PRK07681 174 FPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGSRIGYMIG 253 (399)
T ss_pred CCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCccceeEEEec
Confidence 9999999999999999999999999999999999999887653 455666655457899999999999999999999999
Q ss_pred cccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccE
Q 045431 292 PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPY 371 (433)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~ 371 (433)
+++++ +.+.........+++.+.|.++.+++++. ..++++.++.++++++.+.+.|+++|+.+..|.+|+|
T Consensus 254 ~~~l~--------~~~~~~~~~~~~~~s~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p~~g~f 324 (399)
T PRK07681 254 NEEIV--------RALTQFKSNTDYGVFLPIQKAACAALRNG-AAFCEKNRGIYQERRDTLVDGFRTFGWNVDKPAGSMF 324 (399)
T ss_pred CHHHH--------HHHHHHHhhcccCCCHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCeeeE
Confidence 98885 66766665555678899999999999853 4678899999999999999999999988877889999
Q ss_pred EEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHH
Q 045431 372 VWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKH 430 (433)
Q Consensus 372 ~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~ 430 (433)
+|++++ +.++.++...+++++||.+.||..|+..+++++||+++.+.+++++++++|++
T Consensus 325 ~~~~l~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~l~~l~~ 384 (399)
T PRK07681 325 VWAEIPKGWTSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALVQDEEVLQQAVENIRN 384 (399)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEecCCHHHHHHHHHHHHH
Confidence 999998 44677888888886799999999998666789999998888999999999987
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-53 Score=411.14 Aligned_cols=347 Identities=25% Similarity=0.441 Sum_probs=289.6
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCC-cEEEcCChHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEG-DIFVSDGAKCD 138 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~-~i~~~~G~~~a 138 (433)
+.++++|+.|.|+.+.|+.+++++.+.+.. .....|++..|.++||+++|+|+++ ++.++++ +|++|+|++++
T Consensus 32 ~~~~~~l~~g~p~~~~~~~~~~~~~~~~~~----~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~a 107 (403)
T PRK08636 32 GEDIIDFSMGNPDGPTPQHIIDKLCESAQK----PKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEG 107 (403)
T ss_pred CCCEEEcCCcCCCCCCCHHHHHHHHHHhcC----CccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHH
Confidence 456899999999877788788888776642 3457899899999999999999975 6667887 79999999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCC-------C-----CCC
Q 045431 139 ISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS-------T-----VAR 205 (433)
Q Consensus 139 l~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-----~~~ 205 (433)
+.+ +..++++||.|++++|+|+.+...++..| .+++.++.+.++++..+++ + ..+
T Consensus 108 l~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~ 175 (403)
T PRK08636 108 YVHLVQAITNPGDVAIVPDPAYPIHSQAFILAG------------GNVHKMPLEYNEDFELDEDQFFENLEKALRESSPK 175 (403)
T ss_pred HHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcC------------CEEEEEeccccccCccChhhhhhHHHHHHhhccCC
Confidence 997 57888999999999999999999999999 4788887753332332221 1 247
Q ss_pred ccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEeccccccccccc
Q 045431 206 TDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGV 284 (433)
Q Consensus 206 ~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~ 284 (433)
+++++++|||||||.++|.+++++|+++|++|+++||+||+|+++.+++. ..++.+++...+++|+++||||++|+||+
T Consensus 176 ~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~Gl 255 (403)
T PRK08636 176 PKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNMAGW 255 (403)
T ss_pred ceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccccCCccc
Confidence 88999999999999999999999999999999999999999999888753 45666665545678999999999999999
Q ss_pred ceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeee
Q 045431 285 RLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVY 364 (433)
Q Consensus 285 r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 364 (433)
|+||++++++++ +.+.+.......+++.+.|.++..+++ ....+++++++.++++++.+.+.|++.|+.+.
T Consensus 256 RiG~iv~~~~li--------~~~~~~~~~~~~~~~~~~q~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 326 (403)
T PRK08636 256 RVGFVVGNKKLV--------GALKKIKSWLDYGMFTPIQVAATIALD-GDQSCVEEIRETYRKRRDVLIESFANAGWELQ 326 (403)
T ss_pred eeeeeeCCHHHH--------HHHHHHHHHhcccCChHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCccc
Confidence 999999999885 666665554445567888888777665 33578899999999999999999999888888
Q ss_pred cCCCccEEEEECCC----CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 365 GGKNAPYVWVQFPG----RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 365 ~~~~g~~~~~~~~~----~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
.|.+|+|+|++++. .++.++...+++++||.+.||..|+..+.+++||+++.+++++++++++|+++++
T Consensus 327 ~p~~g~~~~~~l~~~~~~~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~~~rl~~~l~ 399 (403)
T PRK08636 327 KPRASMFVWAKIPEPARHLGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALIENENRIRQAARNIKKFLK 399 (403)
T ss_pred CCCcceEEEEECCCccCCCCHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence 88899999999983 2356777787877899999999998766789999998889999999999998763
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-53 Score=407.83 Aligned_cols=343 Identities=25% Similarity=0.397 Sum_probs=290.6
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHHHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDIS 140 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~al~ 140 (433)
+++|+|+.|+|++++++.+.+++.+... .....|+++.|.++||+++|+|+.+ ++++++++|++|+|+++++.
T Consensus 29 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~-----~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~ 103 (384)
T PRK06348 29 PDIIDLSLGDPDLITDESIINAAFEDAK-----KGHTRYTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMY 103 (384)
T ss_pred CCcEEcCCCCCCCCCCHHHHHHHHHHHh-----cCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHH
Confidence 3589999999998888888776666543 3456899999999999999999975 77889999999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEEcCC
Q 045431 141 R-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFFCSP 214 (433)
Q Consensus 141 ~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~~p 214 (433)
+ +..++++||+|++++|+|+.+...++.+| ..++.++.++++++..+++. .+++++|++++|
T Consensus 104 ~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p 171 (384)
T PRK06348 104 LALQSILDPGDEVIIHEPYFTPYKDQIEMVG------------GKPIILETYEEDGFQINVKKLEALITSKTKAIILNSP 171 (384)
T ss_pred HHHHHhcCCCCEEEEeCCCCcchHHHHHHcC------------CEEEEecCCcCcCCcCCHHHHHHhhCcCccEEEEeCC
Confidence 7 57788999999999999999999999998 36777776544454444332 257899999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecccc
Q 045431 215 NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKE 294 (433)
Q Consensus 215 ~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~ 294 (433)
|||||.++|.+++++|+++|++|+++||+||+|.++.+++...++.++++..+++|+++||||++|+||+|+||++++++
T Consensus 172 ~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~v~~~~ 251 (384)
T PRK06348 172 NNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTITFGSFSKDFAMTGWRIGYVIAPDY 251 (384)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCcCcEEEEecchhccCCccccceeeecCHH
Confidence 99999999999999999999999999999999999888755456666654467899999999999999999999999988
Q ss_pred ccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCCccEEE
Q 045431 295 LLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAPYVW 373 (433)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~ 373 (433)
++ +.+.........+++.++|.++..++.. ..++++++++.++++++.+.+.|++. ++.+..|.+|+|+|
T Consensus 252 ~~--------~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p~gg~~~~ 322 (384)
T PRK06348 252 II--------ETAKIINEGICFSAPTISQRAAIYALKH-RDTIVPLIKEEFQKRLEYAYKRIESIPNLSLHPPKGSIYAF 322 (384)
T ss_pred HH--------HHHHHHHHhccCCCCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeEEEE
Confidence 75 6676666555566899999999988873 34678899999999999999999887 77878888999999
Q ss_pred EECC--CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHh
Q 045431 374 VQFP--GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHL 431 (433)
Q Consensus 374 ~~~~--~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~ 431 (433)
++++ +.++.++...+++++||.+.||+.|+..+++++||+++.+.+++++++++|+++
T Consensus 323 ~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~~ 382 (384)
T PRK06348 323 INIKKTGLSSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLACTVGIEVLEEAFNRIEKM 382 (384)
T ss_pred EecccCCCCHHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEecCCHHHHHHHHHHHHhh
Confidence 9997 356778888888778999999999986667899999988899999999999875
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-53 Score=409.40 Aligned_cols=347 Identities=27% Similarity=0.473 Sum_probs=294.1
Q ss_pred CCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCC-cEEEcCChHH
Q 045431 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEG-DIFVSDGAKC 137 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~-~i~~~~G~~~ 137 (433)
.+.++|+|+.|+|++++|+.+++++.+.+.. .....|+++.|.++||+++|+|+.+ ++.++++ +|++|+|+++
T Consensus 28 ~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~----~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~ 103 (405)
T PRK09148 28 AGADIIDLGMGNPDLPTPQHIVDKLCETAQD----PRTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKE 103 (405)
T ss_pred cCCCeEEcCCCCCCCCCCHHHHHHHHHHHcC----cccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHH
Confidence 3457899999999888889999988887642 3456898889999999999999975 6667787 8999999999
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEE
Q 045431 138 DISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFF 211 (433)
Q Consensus 138 al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l 211 (433)
++.+ +..++++||+|++++|+|+.+...+...| .+++.++.+.++.+..++++ .++++++++
T Consensus 104 al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g------------~~v~~v~~~~~~~~~~~l~~~~~~~~~~~~~v~l 171 (405)
T PRK09148 104 GFANMAQAITAPGDVILCPNPSYPIHAFGFIMAG------------GVIRSVPAEPDEEFFPALERAVRHSIPKPIALIV 171 (405)
T ss_pred HHHHHHHHhcCCCCEEEEcCCCCcccHHHHHhcC------------CEEEEEeCCCCCCCccCHHHHHhhccccceEEEE
Confidence 9997 57788999999999999999998888888 47888888766555544432 257889999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccceeeee
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTV 290 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~ 290 (433)
++||||||.++|.+++++|+++|++|+++||+||+|.++.+++. +.++.+++...+++|+++||||.+|+||+|+||++
T Consensus 172 ~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~G~~v 251 (405)
T PRK09148 172 NYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAV 251 (405)
T ss_pred eCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCcchheeeee
Confidence 99999999999999999999999999999999999999887653 34555555445678999999999999999999999
Q ss_pred ccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCcc
Q 045431 291 IPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAP 370 (433)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~ 370 (433)
++++++ +.+.+.......+++.+.|.++.+++++ ...+++++++.++++++.+.+.|+++|+.+..|.+|+
T Consensus 252 ~~~~~i--------~~l~~~~~~~~~~~~~~~q~~~~~~L~~-~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~g~ 322 (405)
T PRK09148 252 GNERLI--------AALTRVKSYLDYGAFTPIQVAATAALNG-PQDCIAEMRELYKKRRDVLVESFGRAGWDIPPPAASM 322 (405)
T ss_pred CCHHHH--------HHHHHHHHHhccCCChHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCeeE
Confidence 998885 6777766665666788999999999974 3468899999999999999999999988877788999
Q ss_pred EEEEECCCC----ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 371 YVWVQFPGR----SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 371 ~~~~~~~~~----~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
|+|++++.. ...++...+++++||.+.||..|+..+++++||++..+.+++++++++|++++
T Consensus 323 f~~~~l~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~~~~~~l~~al~~l~~~l 388 (405)
T PRK09148 323 FAWAPIPEAFRHLGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALVENEQRIRQAARNIKRFL 388 (405)
T ss_pred EEEEECCCccCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 999999842 34677778887779999999999765678999999888999999999998875
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-54 Score=390.14 Aligned_cols=362 Identities=28% Similarity=0.431 Sum_probs=298.7
Q ss_pred CCcHHHHHHHHHHHhcCCCCceEE-ecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--
Q 045431 44 YLFPEIARRKAAHMLKYPDAEVIS-LGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK-- 120 (433)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~i~-l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~-- 120 (433)
+++.++.++..... ..+ |+.|.|++++|+.+.+++.+.+.. ....+|++..|.++|+++|++.++.
T Consensus 18 ~vw~e~~~la~e~~-------~~~~LgqGfp~~~~P~fv~ea~~~~~~~----~~~~qYt~~~G~p~L~~aL~k~~se~~ 86 (420)
T KOG0257|consen 18 YVWTEINRLAAEHK-------VPNPLGQGFPDFPPPKFVTEAAKNAAKE----PSTNQYTRGYGLPQLRKALAKAYSEFY 86 (420)
T ss_pred cHHHHHHHHHHhcC-------CCCcccCCCCCCCCcHHHHHHHHHHhcc----chhccccccCCchHHHHHHHHHHHHHh
Confidence 67777766544322 223 999999999999999999999975 3567899999999999999999886
Q ss_pred -cCCCCCCcEEEcCChHHHHH-HHHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCccc
Q 045431 121 -DLGIEEGDIFVSDGAKCDIS-RLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFP 198 (433)
Q Consensus 121 -~~~~~~~~i~~~~G~~~al~-~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (433)
+...+.++|++|+|+.+++. .+..+|++||+|++.+|.|..|....+++|..++++..+..+.+ + ....+..
T Consensus 87 ~~~~~~~~eVlVT~GA~~ai~~~~~~l~~~GDeVii~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~-~-----~s~~~~~ 160 (420)
T KOG0257|consen 87 GGLLDPDDEVLVTAGANEAISSALLGLLNPGDEVIVFEPFFDCYIPQVVMAGGTPVFVPLKPKEGN-V-----SSSDWTL 160 (420)
T ss_pred ccccCCcccEEEecCchHHHHHHHHHHcCCCCEEEEecCcchhhhhHHhhcCCcceeecccccccc-c-----cCccccC
Confidence 44446788999999999998 58999999999999999999999999999976554333322222 0 1223333
Q ss_pred CCC-----CCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEE
Q 045431 199 DLS-----TVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIET 272 (433)
Q Consensus 199 ~~~-----~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i 272 (433)
|.+ -++++|+|++|+||||||.++|++++++|+++|++||++||.||+|..+.+++. ...+.+++++.+++|.+
T Consensus 161 D~~~le~~~t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitv 240 (420)
T KOG0257|consen 161 DPEELESKITEKTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITV 240 (420)
T ss_pred ChHHHHhhccCCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEe
Confidence 322 257999999999999999999999999999999999999999999999999986 67788889999999999
Q ss_pred ecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCC-------hhHHHHHHHHH
Q 045431 273 SSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEG-------FKAVHEVIGFY 345 (433)
Q Consensus 273 ~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~-------~~~~~~~~~~~ 345 (433)
+|+||+||+.|||+||+++++.++ .....+........+.+.|.|..+++.... ..++..+.+.|
T Consensus 241 gS~gKtf~~TGWrlGW~igp~~L~--------~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y 312 (420)
T KOG0257|consen 241 GSFGKTFGVTGWRLGWAIGPKHLY--------SALFPVHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEY 312 (420)
T ss_pred ccccceeeeeeeeeeeeechHHhh--------hhHHHHhhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHH
Confidence 999999999999999999987775 555555555666678888888887776322 14567799999
Q ss_pred HHHHHHHHHHHhhcCCeeecCCCccEEEEECCC-------------CChHHHHHHHHHcCCeEecCCCCCCCCC-----C
Q 045431 346 KENTDIIVETFNSLGFKVYGGKNAPYVWVQFPG-------------RSSWDVFSEILEKTHVVTTPGSGFGPGG-----E 407 (433)
Q Consensus 346 ~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~-------------~~~~~~~~~l~~~~gi~v~~g~~f~~~~-----~ 407 (433)
+++|+.+.+.|+++|+++..|++++|+|++++. .++-.+..+++++.|+.+.|++.|+... .
T Consensus 313 ~~krdil~k~L~~lg~~v~~p~gayyl~adfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~~~~~~~ 392 (420)
T KOG0257|consen 313 KEKRDILAKALEELGLKVTGPEGAYYLWADFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFGSREHIKVAE 392 (420)
T ss_pred HHHHHHHHHHHHhcCCccccCCCceEEEEeccccccCCcchhhccCCCceeeehhhhccCcEEEeCchhcCCchhhHHHH
Confidence 999999999999999999999999999999981 0234567889999999999999998543 4
Q ss_pred CeEEEeeccChhHHHHHHHHHHH
Q 045431 408 GFIRVSAFGHRGNVLEACKRFKH 430 (433)
Q Consensus 408 ~~iRi~~~~~~~~l~~~l~~l~~ 430 (433)
+++|++++.+.+.++.++++|++
T Consensus 393 ~~~r~~~~k~~~~L~~a~e~l~~ 415 (420)
T KOG0257|consen 393 RLVRFCFCKADETLRKAIERLKK 415 (420)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhh
Confidence 57899999999999999999984
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-53 Score=407.30 Aligned_cols=345 Identities=28% Similarity=0.480 Sum_probs=289.7
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCC-cEEEcCChHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEG-DIFVSDGAKCD 138 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~-~i~~~~G~~~a 138 (433)
++++|+|+.|.|+.+.++.+.+++.+.+.. .....|++..|.++||+++|+|+.+ ++.++++ +|++|+|++++
T Consensus 31 ~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~----~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~ 106 (389)
T PRK08068 31 GHDVINLGQGNPDQPTPEHIVEALQEAAEN----PANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAG 106 (389)
T ss_pred CCCeEEecCCCCCCCCCHHHHHHHHHHHhC----CCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHH
Confidence 446899999999888788888888887753 3356898899999999999999975 6667888 89999999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEEc
Q 045431 139 ISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFFC 212 (433)
Q Consensus 139 l~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~ 212 (433)
+.. +..++++||.|++++|+|+.+...++..| .+++.++.+.+.++..+++. ..++++|+++
T Consensus 107 l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g------------~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~ 174 (389)
T PRK08068 107 LVELPQCLMNPGDTILVPDPGYPDYLSGVALAR------------AQFETMPLIAENNFLPDYTKIPEEVAEKAKLMYLN 174 (389)
T ss_pred HHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcC------------CEEEEeecccccCCCCCHHHHHHhccccceEEEEE
Confidence 987 57788999999999999999999999999 48888888765566555322 2578999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC-CCCcccccCCCCcceEEEecccccccccccceeeeec
Q 045431 213 SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDD-NPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVI 291 (433)
Q Consensus 213 ~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~ 291 (433)
|||||||.++|.+++++|+++|++|+++||+||+|.++.+++ .+.++....+..+++++++||||+||++|+|+||+++
T Consensus 175 ~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~ 254 (389)
T PRK08068 175 YPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFAVG 254 (389)
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCccceeEeEec
Confidence 999999999999999999999999999999999999987765 3445444433356889999999999999999999999
Q ss_pred cccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccE
Q 045431 292 PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPY 371 (433)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~ 371 (433)
+++++ +.+.+.......+.+.+.|.++.+++.+ +..+++++++.++++++.+.+.|+++|+.+.+|.+|+|
T Consensus 255 ~~~l~--------~~l~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~r~~~~~~L~~~g~~~~~~~g~~~ 325 (389)
T PRK08068 255 NESVI--------EAINLLQDHLFVSLFGAIQDAAIEALLS-DQSCVAELVARYESRRNAFISACREIGWEVDAPKGSFF 325 (389)
T ss_pred CHHHH--------HHHHHHHhhccCCCChHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCeeEE
Confidence 98885 6666665544455566778888888763 34788999999999999999999999988888888999
Q ss_pred EEEECCC-CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHh
Q 045431 372 VWVQFPG-RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHL 431 (433)
Q Consensus 372 ~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~ 431 (433)
+|+++++ .++.++...+++++||.+.||..|+..+++++||++..+++++++++++|+++
T Consensus 326 ~~v~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~~ 386 (389)
T PRK08068 326 AWMPVPKGYTSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLLTDEERLREAVERIGKL 386 (389)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEcCCHHHHHHHHHHHHHh
Confidence 9999984 46677888887777999999999986667899999988889999999999874
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-52 Score=404.15 Aligned_cols=344 Identities=33% Similarity=0.516 Sum_probs=292.4
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCC-cEEEcCChHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEG-DIFVSDGAKCD 138 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~-~i~~~~G~~~a 138 (433)
++++++|+.|+|++++|+.+++++.+.+.. .....|+++.|.++||+++|+|+.+ ++.++++ +|++|+|++++
T Consensus 28 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~ 103 (383)
T TIGR03540 28 GVDVISLGIGDPDLPTPKHIVEALCKAAEN----PENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEG 103 (383)
T ss_pred CCCeEEeCCCCCCCCCCHHHHHHHHHHHhC----CCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHH
Confidence 457899999999988899999999987753 3356898889999999999999985 5666766 69999999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEEc
Q 045431 139 ISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFFC 212 (433)
Q Consensus 139 l~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~ 212 (433)
+.+ +..++++||.|++++|+|+.+...++.+| .+++.++.+.++++..+++. ..++++++++
T Consensus 104 l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~G------------~~v~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~i~ 171 (383)
T TIGR03540 104 IAHIPLAFVNPGDIVLVPDPGYPVYRIGTLFAG------------GEPYEMPLKEENGFLPDFDAIPEDIAKKAKLMFIN 171 (383)
T ss_pred HHHHHHHhCCCCCEEEEeCCCCcchHHHHHhcC------------CEEEEEecCcccCCccCHHHHHhhccccceEEEEe
Confidence 997 57778999999999999999999999999 48888888765555444321 3578999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccceeeeec
Q 045431 213 SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVI 291 (433)
Q Consensus 213 ~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~ 291 (433)
|||||||.++|.+++++|+++|++|+++||+||+|.++.+++. +.++.+++...+++|+++||||.+|++|+|+||+++
T Consensus 172 ~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~i~ 251 (383)
T TIGR03540 172 YPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAVG 251 (383)
T ss_pred CCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCccceeeEEeC
Confidence 9999999999999999999999999999999999999887653 455666654346789999999999999999999999
Q ss_pred cccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccE
Q 045431 292 PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPY 371 (433)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~ 371 (433)
+++++ +.+.........+++.+.|.++.+++.+. .++++++++.++++++.+.+.|+++|+.+..+.+|+|
T Consensus 252 ~~~l~--------~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~ 322 (383)
T TIGR03540 252 NADLI--------AGLGKVKTNVDSGVFQAIQYAAIAALNGP-QDVVKEIRKIYQRRRDLLLEALKKIGIDVEKPKATFY 322 (383)
T ss_pred CHHHH--------HHHHHHHHhcccCCChHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHhCCCEecCCCcceE
Confidence 98885 66666655555567888999999998753 5788999999999999999999999998888888999
Q ss_pred EEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHH
Q 045431 372 VWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKH 430 (433)
Q Consensus 372 ~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~ 430 (433)
+|++++ +.++.++...+++++||.+.||..|+..+++++||++..+++++++++++|++
T Consensus 323 ~~~~l~~~~~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~ 382 (383)
T TIGR03540 323 VWVPVPEGYTSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLTVPDERLEEAVARIKK 382 (383)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCEEEecchhhCccCCCeEEEEecCCHHHHHHHHHHHhh
Confidence 999998 45677888888777799999999997656789999998889999999999975
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-52 Score=404.43 Aligned_cols=345 Identities=18% Similarity=0.267 Sum_probs=285.7
Q ss_pred CceEEecCCCCC-CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCC-CcEEEcCChHHH
Q 045431 63 AEVISLGIGDTT-EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEE-GDIFVSDGAKCD 138 (433)
Q Consensus 63 ~~~i~l~~g~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~-~~i~~~~G~~~a 138 (433)
.+.|+|+.|.++ .++|+.+.+++.+.+.+ .....|++..|.++||+++++|+.+ ++.+++ ++|++|+|++++
T Consensus 39 ~~~i~l~~g~~~~~~p~~~~~~~~~~~~~~----~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~a 114 (405)
T PRK06207 39 GRPVDFSHGDVDAHEPTPGAFELFSAGVER----GGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGA 114 (405)
T ss_pred CCceecCCcCCCCCCCCHHHHHHHHHHHhc----CCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHH
Confidence 357999999987 45677888888887753 3346898899999999999999986 555777 899999999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCc---cCCcccCCC---C--CCCccEE
Q 045431 139 ISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTA---ENGFFPDLS---T--VARTDII 209 (433)
Q Consensus 139 l~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---~--~~~~~~i 209 (433)
+.+ +..++++||+|++++|+|+.+...++..| .+++.++.+. +.++..+++ + ..+++++
T Consensus 115 l~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~g------------~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~~~k~v 182 (405)
T PRK06207 115 LFLAVAATVARGDKVAIVQPDYFANRKLVEFFE------------GEMVPVQLDYLSADKRAGLDLDQLEEAFKAGVRVF 182 (405)
T ss_pred HHHHHHHhcCCCCEEEEeCCCchhHHHHHHHcC------------CEEEEEeccccCcccCCCcCHHHHHHhhhhcCeEE
Confidence 997 57788999999999999999999999999 4777777652 222333322 1 2468899
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccceee
Q 045431 210 FFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGW 288 (433)
Q Consensus 210 ~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~ 288 (433)
+++|||||||.+++.+++++|+++|++||++||+||+|.++.+++. +.++..++...+++|+++||||++++||+|+||
T Consensus 183 ~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG~ 262 (405)
T PRK06207 183 LFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYRLGV 262 (405)
T ss_pred EECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcccceEE
Confidence 9999999999999999999999999999999999999999988764 344544443457899999999999999999999
Q ss_pred eeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCC
Q 045431 289 TVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGK 367 (433)
Q Consensus 289 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~ 367 (433)
++++++++ +.+.........+.+.+.|.++.+++++. ..++++..+.++++++.+.+.|+++ ++.+..|.
T Consensus 263 ii~~~~l~--------~~~~~~~~~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~ 333 (405)
T PRK06207 263 AFGSPAII--------DRMEKLQAIVSLRAAGYSQAVLRTWFSEP-DGWMKDRIARHQAIRDDLLRVLRGVEGVFVRAPQ 333 (405)
T ss_pred EEcCHHHH--------HHHHHHHhHhccCCCHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCC
Confidence 99998885 66766665555667888999999999742 3456777888889999999999887 78888888
Q ss_pred CccEEEEECCC--CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 368 NAPYVWVQFPG--RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 368 ~g~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+|+|+|++++. .+..++...+++++||.+.||..|+...++++||+++.+.+++++++++|++++
T Consensus 334 gg~fl~~~l~~~~~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~~~~~~l~~al~rl~~~l 400 (405)
T PRK06207 334 AGSYLFPRLPRLAVSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFSQDHAAAVAAAERIAQLI 400 (405)
T ss_pred eeEEEEEeCcccCCCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 99999999984 356778877776779999999999766678999999888999999999999876
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-52 Score=403.16 Aligned_cols=344 Identities=29% Similarity=0.419 Sum_probs=290.0
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCC-cEEEcCChHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEG-DIFVSDGAKCDIS 140 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~-~i~~~~G~~~al~ 140 (433)
++|+|+.|+|++++++.+.+++.+.+. .....|++..|.++||+++|+|+.+ ++.++++ +|++|+|+++++.
T Consensus 21 ~~i~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~ 95 (378)
T PRK07682 21 GVISLGVGEPDFVTPWNVREASIRSLE-----QGYTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALD 95 (378)
T ss_pred CeEEeCCCCCCCCCCHHHHHHHHHHHh-----cCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHH
Confidence 589999999998888888888888764 2356798889999999999999986 6666775 8999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCC---C--CCCccEEEEcCC
Q 045431 141 R-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS---T--VARTDIIFFCSP 214 (433)
Q Consensus 141 ~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~i~l~~p 214 (433)
+ +..++++||+|++++|+|+.+...++..| ..++.++.+.++++..+++ + .++++++++++|
T Consensus 96 ~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p 163 (378)
T PRK07682 96 VAMRAIINPGDEVLIVEPSFVSYAPLVTLAG------------GVPVPVATTLENEFKVQPAQIEAAITAKTKAILLCSP 163 (378)
T ss_pred HHHHHhCCCCCEEEEeCCCchhhHHHHHHcC------------CEEEEeecCCccCCCCCHHHHHhhcCcccEEEEEECC
Confidence 7 57788999999999999999999998888 3667777654333333322 2 257899999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecccc
Q 045431 215 NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKE 294 (433)
Q Consensus 215 ~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~ 294 (433)
|||||.++|.+++++|+++|++|+++||+||+|.++.+++.+.++..+++..+++++++||||.+|+||+|+||++++++
T Consensus 164 ~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~ 243 (378)
T PRK07682 164 NNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAPVY 243 (378)
T ss_pred CCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccChhhhhhhhhcCHH
Confidence 99999999999999999999999999999999999988765455555554457899999999999999999999999998
Q ss_pred ccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEE
Q 045431 295 LLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWV 374 (433)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~ 374 (433)
++ +.+.........+++.++|.++.++|++. ..+++++++.++++++.+.+.|+++|+.+..|.+++|+|+
T Consensus 244 ~i--------~~l~~~~~~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~p~g~~~~~~ 314 (378)
T PRK07682 244 FS--------EAMLKIHQYSMMCAPTMAQFAALEALRAG-NDDVIRMRDSYRKRRNFFVTSFNEIGLTCHVPGGAFYAFP 314 (378)
T ss_pred HH--------HHHHHHHHhhccCCCHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHHCCCccCCCCeeEEEEE
Confidence 85 66665555555667899999999999743 4568899999999999999999999988888889999999
Q ss_pred ECC--CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 375 QFP--GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 375 ~~~--~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
.++ +.++.++...+++++||.+.||..|+..+++++||+++.+.+++++++++|+++++
T Consensus 315 ~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~l~ 375 (378)
T PRK07682 315 SISSTGLSSEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYATSLEQLQEAMKRMKRFVE 375 (378)
T ss_pred eccCCCCCHHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeCCCHHHHHHHHHHHHHHHh
Confidence 985 45677788888777799999999997666789999998889999999999998863
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-52 Score=401.90 Aligned_cols=345 Identities=34% Similarity=0.546 Sum_probs=291.2
Q ss_pred CCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCC-cEEEcCChHH
Q 045431 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEG-DIFVSDGAKC 137 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~-~i~~~~G~~~ 137 (433)
.+.++|+|+.|+|++++++.+.+++.+.+.. .....|++..|.++||+++++|+.+ ++.++++ +|++|+|+++
T Consensus 29 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~ 104 (385)
T PRK09276 29 RGVDVISLGIGDPDLPTPDHIIEAMCKAVED----PENHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKE 104 (385)
T ss_pred cCCCEEEecCCCCCCCCCHHHHHHHHHHHhC----CCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHH
Confidence 3456899999999988888999999888753 2346798889999999999999985 5556776 5999999999
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEE
Q 045431 138 DISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFF 211 (433)
Q Consensus 138 al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l 211 (433)
++.+ +..++++||+|++++|+|+.+...++..| .+++.++.+.+.++..+++. ..++++|++
T Consensus 105 ~i~~~~~~~~~~gd~Vl~~~P~y~~~~~~~~~~g------------~~~~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~l 172 (385)
T PRK09276 105 GIAHIPLAFVNPGDVVLVPDPGYPVYKIGTIFAG------------GEPYFMPLKEENGFLPDLDAIPEDVAKKAKLMFI 172 (385)
T ss_pred HHHHHHHHhCCCCCEEEEcCCCCcChHHHHHHcC------------CEEEEEecCCCCCCcCCHHHHHHhccccceEEEE
Confidence 9997 57778999999999999999999999888 47888888765555444322 357899999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccceeeee
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTV 290 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~ 290 (433)
+|||||||.+++.+++++|+++|++|+++||+||+|.++.+++. +.++.+++...+++|+++||||.+|++|+|+||++
T Consensus 173 ~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~i 252 (385)
T PRK09276 173 NYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFAV 252 (385)
T ss_pred eCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCCcchhheeee
Confidence 99999999999999999999999999999999999999887653 45666665445678999999999999999999999
Q ss_pred ccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCcc
Q 045431 291 IPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAP 370 (433)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~ 370 (433)
++++++ +.+.+.......+.+.+.|.++..++.+ ...+++++++.++++++.+.+.|++.|+.+..+.+|+
T Consensus 253 ~~~~l~--------~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 323 (385)
T PRK09276 253 GNADLI--------AGLGKVKSNVDSGVFQAIQEAGIAALNG-PQEVVEELRKIYQERRDILVEGLRKLGLEVEPPKATF 323 (385)
T ss_pred CCHHHH--------HHHHHHHhhccCCCCHHHHHHHHHHHcC-cHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcce
Confidence 998885 6666655545555777899988888874 3568899999999999999999999898888888899
Q ss_pred EEEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHH
Q 045431 371 YVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKH 430 (433)
Q Consensus 371 ~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~ 430 (433)
|+|++++ +.++.++...+++++||.+.||..|+..+++++||+++.+++++++++++|++
T Consensus 324 ~~~v~~~~~~~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~ 384 (385)
T PRK09276 324 YVWAPVPKGYTSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALTVPDERIEEAVERIKK 384 (385)
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeCCCHHHHHHHHHHHhh
Confidence 9999998 45677788888877799999999997666789999998889999999999975
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-52 Score=402.17 Aligned_cols=345 Identities=25% Similarity=0.396 Sum_probs=291.5
Q ss_pred CCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHH
Q 045431 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCD 138 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~a 138 (433)
.++++|+|+.|+|++++|+.+.+++.+.+.. ....|++..|.++||+++|+|+.+ ++++++++|++|+|++++
T Consensus 30 ~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~-----~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~a 104 (387)
T PRK08960 30 AGHDVIHLEIGEPDFTTAEPIVAAGQAALAA-----GHTRYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGA 104 (387)
T ss_pred cCCCeEEeCCCCCCCCCCHHHHHHHHHHHhc-----CCCccCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHH
Confidence 3457899999999988899999999998863 235798899999999999999975 677899999999999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEEc
Q 045431 139 ISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFFC 212 (433)
Q Consensus 139 l~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~ 212 (433)
+.+ +..++.+||+|++++|+|+.+...+...| .+++.++++.++++..+++. .+++++++++
T Consensus 105 l~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~ 172 (387)
T PRK08960 105 LLLASSLLVDPGKHWLLADPGYPCNRHFLRLVE------------GAAQLVPVGPDSRYQLTPALVERHWNADTVGALVA 172 (387)
T ss_pred HHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcC------------CeEEEEecCcccCCCCCHHHHHHHhCccceEEEEE
Confidence 997 57778999999999999999999998888 47778888665554444332 2467888999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecc
Q 045431 213 SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIP 292 (433)
Q Consensus 213 ~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~ 292 (433)
+||||||.++|.+++++|+++|++||++||+||+|.++.+++.+.++... ++++++++||||.+|++|+|+||++++
T Consensus 173 ~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~~~~~~---~~~vi~~~S~SK~~g~~GlRiG~~~~~ 249 (387)
T PRK08960 173 SPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAASVLEV---DDDAFVLNSFSKYFGMTGWRLGWLVAP 249 (387)
T ss_pred CCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhc---cCCEEEEeecccccCCcccEEEEEEcC
Confidence 99999999999999999999999999999999999998776544454443 458999999999999999999999999
Q ss_pred ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCee-ecCCCccE
Q 045431 293 KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKV-YGGKNAPY 371 (433)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~-~~~~~g~~ 371 (433)
++++ +.+.+.......+++.+.|.++.+++.+....++++.++.++++++.+.+.|+++|+.+ ..|.+|+|
T Consensus 250 ~~~~--------~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~f 321 (387)
T PRK08960 250 PAAV--------PELEKLAQNLYISASTPAQHAALACFEPETLAILEARRAEFARRRDFLLPALRELGFGIAVEPQGAFY 321 (387)
T ss_pred HHHH--------HHHHHHHhhhccCCCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcCCCeeEE
Confidence 8885 66766666556668999999999998754447889999999999999999999988765 45778999
Q ss_pred EEEECCC--CChHHHHHHHHHcCCeEecCCCCCCCC-CCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 372 VWVQFPG--RSSWDVFSEILEKTHVVTTPGSGFGPG-GEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 372 ~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~f~~~-~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
+|++++. .++.++...+++++||.+.||+.|+.. ..+++||++..+.+++++++++|+++++
T Consensus 322 ~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~~~~~l~~al~~l~~~~~ 386 (387)
T PRK08960 322 LYADISAFGGDAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQSLPRLQEAVERIARGLR 386 (387)
T ss_pred EEEeccccCCCHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecCCHHHHHHHHHHHHHHHh
Confidence 9999984 466777778887789999999999753 3579999998889999999999998763
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-52 Score=399.19 Aligned_cols=359 Identities=28% Similarity=0.415 Sum_probs=294.8
Q ss_pred CCCcHHHHHHHHHHHhcCCCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--
Q 045431 43 GYLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK-- 120 (433)
Q Consensus 43 g~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~-- 120 (433)
.|.+..+...........++.++|+|+.|+|++.+++.+++++.+.+.. .....|+ ..|.++||+++|+|+++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~i~L~~g~p~~~~~~~~~~~l~~~~~~----~~~~~Y~-~~G~~~lr~aia~~~~~~~ 98 (410)
T PRK06290 24 IYKFEKIKRAKRAAKEKHPDMELIDMGVGEPDEMADESVVEVLCEEAKK----PENRGYA-DNGIQEFKEAAARYMEKVF 98 (410)
T ss_pred hhHHHHHHHHHHHHhhhcCCCCeEEcCCCCCCCCCCHHHHHHHHHHHhC----CCCCCCC-CCCcHHHHHHHHHHHHHHc
Confidence 4555444433333333345667999999999988889999988887643 2345686 48999999999999975
Q ss_pred cCC-CCCC-cEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcc
Q 045431 121 DLG-IEEG-DIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFF 197 (433)
Q Consensus 121 ~~~-~~~~-~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (433)
++. ++++ +|++|+|+++++.+ +..++++||.|++++|+|+.+...++..| .+++.++.+.++++.
T Consensus 99 g~~~~~~~~~I~it~Gs~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g------------~~v~~v~~~~~~~~~ 166 (410)
T PRK06290 99 GVKDIDPVTEVIHSIGSKPALAMLPSCFINPGDVTLMTVPGYPVTGTHTKYYG------------GEVYNLPLLEENNFL 166 (410)
T ss_pred CCCcCCCcceEEEccCHHHHHHHHHHHhCCCCCEEEEeCCCCccHHHHHHHcC------------CEEEEEecCCCcCCc
Confidence 565 7776 79999999999987 57788999999999999999999999998 588899987666665
Q ss_pred cCCCC-----CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEE
Q 045431 198 PDLST-----VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIET 272 (433)
Q Consensus 198 ~~~~~-----~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i 272 (433)
.+++. ..++++|+++|||||||.++|.+++++|+++|++|+++||+||+|.++.+++.+.++.+++...+++|++
T Consensus 167 ~d~~~l~~~~~~~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i 246 (410)
T PRK06290 167 PDLDSIPKDIKEKAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEI 246 (410)
T ss_pred CCHHHHHHhhcccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEE
Confidence 55432 2478999999999999999999999999999999999999999999988765555666665445678999
Q ss_pred ecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHH
Q 045431 273 SSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDII 352 (433)
Q Consensus 273 ~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 352 (433)
+||||.+|++|+|+||++++++++ +.+.+.......+++.++|.++..++++. .++++.++.++++++.+
T Consensus 247 ~SfSK~~g~~GlRiG~ii~~~~l~--------~~l~~~~~~~~~~~~~~~q~aa~~~l~~~--~~~~~~~~~~~~~~~~l 316 (410)
T PRK06290 247 HSLSKAYNMTGWRLAFVVGNELIV--------KAFATVKDNNDSGQFIAIQKAGIYALDHP--EITEKIREKYSRRLDKL 316 (410)
T ss_pred eechhhcCCchhheEeEEeCHHHH--------HHHHHHHhccccCCcHHHHHHHHHHhhCc--HHHHHHHHHHHHHHHHH
Confidence 999999999999999999998885 66776665556666789999999999753 56788999999999999
Q ss_pred HHHHhhcCCeeecCCCccEEEEECCC--------CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec---cChhHH
Q 045431 353 VETFNSLGFKVYGGKNAPYVWVQFPG--------RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF---GHRGNV 421 (433)
Q Consensus 353 ~~~l~~~g~~~~~~~~g~~~~~~~~~--------~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~---~~~~~l 421 (433)
.+.|+++|+.+.+|.+|+|+|++++. .++.++.+.|+++.++.+.||..|+ +++||+++ .++++.
T Consensus 317 ~~~L~~~g~~~~~p~g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~~----~~lRi~~~~~~~~~~~~ 392 (410)
T PRK06290 317 VKILNEVGFKAEMPGGTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDDAG----HFLRFSVTFEAKDEEEE 392 (410)
T ss_pred HHHHHhCCCeecCCCeeeEEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCcccc----CeEEEEEEcccccccch
Confidence 99999999988888899999999984 2567888888888788888987653 68999986 378888
Q ss_pred HHHHHHHHHhh
Q 045431 422 LEACKRFKHLY 432 (433)
Q Consensus 422 ~~~l~~l~~~l 432 (433)
++.+++|++.|
T Consensus 393 ~~~~~~l~~~~ 403 (410)
T PRK06290 393 DRILEEIKRRL 403 (410)
T ss_pred hHHHHHHHHHH
Confidence 88888888765
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-52 Score=401.10 Aligned_cols=343 Identities=24% Similarity=0.410 Sum_probs=285.4
Q ss_pred CCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCC-CCCC-cEEEcCChH
Q 045431 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLG-IEEG-DIFVSDGAK 136 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~-~~~~-~i~~~~G~~ 136 (433)
.+.++|+|+.|+|++++|+.+.+++.+.+. ....|++..|.++||+++|+|+.+ ++. ++++ +|++|+|++
T Consensus 27 ~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~------~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~ 100 (396)
T PRK09147 27 ADLPPISLSIGEPKHPTPAFIKDALAANLD------GLASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSR 100 (396)
T ss_pred cCCCeEecCCCCCCCCCCHHHHHHHHHHhh------hhcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChH
Confidence 466899999999998889999999888663 346798899999999999999975 666 7775 999999999
Q ss_pred HHHHH-HHHhcCC---CCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCcc
Q 045431 137 CDISR-LQIVFGS---NVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTD 207 (433)
Q Consensus 137 ~al~~-l~~l~~~---gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 207 (433)
+++.+ +..++++ ||.|++++|+|+.+...++..| .+++.+|.+.++++..+++. .++++
T Consensus 101 ~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~g------------~~~~~vp~~~~~~~~~d~~~l~~~~~~~~k 168 (396)
T PRK09147 101 EALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLAG------------AEPYFLNCDPANNFAPDFDAVPAEVWARTQ 168 (396)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEcCCCccchHHHHHhcC------------CEEEEeccCccccCccCHHHHHHHHhhccE
Confidence 99997 5778899 8999999999999999999998 58889998766555555432 25789
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCccc-c---cC-CCCcceEEEeccccccc
Q 045431 208 IIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN--PRSIF-E---IP-GAKEVAIETSSFSKYAG 280 (433)
Q Consensus 208 ~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~--~~~~~-~---~~-~~~~~vi~i~S~sK~~~ 280 (433)
++++||||||||.++|.+++++|+++|++|+++||+||+|.++.+++. +.+.. . .+ ...+++|+++||||.++
T Consensus 169 ~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~ 248 (396)
T PRK09147 169 LLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSN 248 (396)
T ss_pred EEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccccccC
Confidence 999999999999999999999999999999999999999999887652 22211 1 11 12468999999999999
Q ss_pred ccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcC
Q 045431 281 FTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLG 360 (433)
Q Consensus 281 ~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 360 (433)
++|+|+||++++++++ +.+.+.......+++.+.|.++.+.+.. ..++++.++.++++++.+.+.|++.
T Consensus 249 ~~GlRiG~~~~~~~l~--------~~~~~~~~~~~~~~~~~~q~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~L~~~- 317 (396)
T PRK09147 249 VPGLRSGFVAGDAALL--------KKFLLYRTYHGCAMPPAVQAASIAAWND--EAHVRENRALYREKFDAVTPILAPV- 317 (396)
T ss_pred CccceeeeecCCHHHH--------HHHHHHhhhcccCCCHHHHHHHHHHhcc--hhHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 9999999999998885 6666555544556788999988887753 3578899999999999999999885
Q ss_pred CeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCC------CCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 361 FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGP------GGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 361 ~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~------~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
+.+..|.+|+|+|++++ .++.++...+++++||.+.||..|+. .+.+++||+++.+++++++++++|+++++
T Consensus 318 ~~~~~p~~g~f~~~~~~-~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~~~~~~l~~~l~rl~~~~~ 395 (396)
T PRK09147 318 LDVQLPDAGFYLWAKVP-GDDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALVAPLAECVEAAERIVDFCR 395 (396)
T ss_pred cCCCCCCeeEEEEEECC-CCHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEecCCHHHHHHHHHHHHHHhc
Confidence 66667889999999998 45677888888778999999998863 23679999998889999999999998763
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-52 Score=399.87 Aligned_cols=346 Identities=28% Similarity=0.467 Sum_probs=289.3
Q ss_pred CCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCC-cEEEcCChHH
Q 045431 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEG-DIFVSDGAKC 137 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~-~i~~~~G~~~ 137 (433)
.+.++|+|+.|.|+.++|+.+++++.+.+.. .....|+++.|.++||+++|+|+.+ ++.++++ +|++|+|+++
T Consensus 33 ~g~~~i~l~~g~p~~~~p~~~~~~~~~~~~~----~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~ 108 (394)
T PRK05942 33 QGLDLIDLGMGNPDGAAPQPVIEAAIAALAD----PQNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKE 108 (394)
T ss_pred cCCCeEEcCCCCCCCCCCHHHHHHHHHHHhC----CCCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHH
Confidence 3456899999998877778888888777653 3346898899999999999999975 5667787 5999999999
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEE
Q 045431 138 DISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFF 211 (433)
Q Consensus 138 al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l 211 (433)
++.+ +..++++||+|++++|+|+.+...+...| .+++.++.+.++++..+++. .+++++|++
T Consensus 109 al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l 176 (394)
T PRK05942 109 GLTHLALAYVNPGDVVLVPSPAYPAHFRGPLIAG------------AQIYPIILKPENDWLIDLSSIPEEVAQQAKILYF 176 (394)
T ss_pred HHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHcC------------CEEEEeecCCccCCccCHHHHHHhccccceEEEE
Confidence 9997 57788999999999999999988888888 47888888755554444321 258899999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccceeeee
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTV 290 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~ 290 (433)
+|||||||.++|.+++++|+++|++|+++||+||+|.++.+++. +.++.++++..+++|+++||||.||++|+|+||++
T Consensus 177 ~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i~ 256 (394)
T PRK05942 177 NYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVV 256 (394)
T ss_pred cCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccCChhhheeeee
Confidence 99999999999999999999999999999999999999887653 45565665445678999999999999999999999
Q ss_pred ccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCcc
Q 045431 291 IPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAP 370 (433)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~ 370 (433)
++++++ +.+.........+.+.++|.++..+++. ..+++++.+++++++++.+.+.|++.|+.+..+.+|+
T Consensus 257 ~~~~l~--------~~l~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~ 327 (394)
T PRK05942 257 GNRHII--------QGLRTLKTNLDYGIFSALQKAAETALQL-PDSYLQQVQERYRTRRDFLIQGLGELGWNIPPTKATM 327 (394)
T ss_pred cCHHHH--------HHHHHHHhhcccCCCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCeee
Confidence 998875 6676665554556788999999988863 3467899999999999999999998888888888899
Q ss_pred EEEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHh
Q 045431 371 YVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHL 431 (433)
Q Consensus 371 ~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~ 431 (433)
|+|++++ +.++.++..++++++||.+.||+.|+..+.+++|+++..+.+.+.+++++|.++
T Consensus 328 f~~~~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~ 389 (394)
T PRK05942 328 YLWVPCPVGMGSTDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLIADCDRLGEALDRLKQA 389 (394)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEecCCHHHHHHHHHHHHHh
Confidence 9999998 446677777788888999999999976667899999987889999999999764
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-52 Score=405.16 Aligned_cols=352 Identities=20% Similarity=0.238 Sum_probs=279.4
Q ss_pred CCceEEecCCCC---CCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChH
Q 045431 62 DAEVISLGIGDT---TEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAK 136 (433)
Q Consensus 62 ~~~~i~l~~g~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~ 136 (433)
+.++++++.|+| ++++|+.+.+++.+.+.. ....+|++..|.++||+++|+|+++ ++.+++++|++|+|++
T Consensus 31 g~~~~~~~~G~p~~~~~~~p~~~~~a~~~~~~~----~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~ 106 (433)
T PRK06855 31 GVKITWENIGDPIAKGEKIPDWMKEIVAELVMD----DKSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLG 106 (433)
T ss_pred cccccccccCCCcccCCCCCHHHHHHHHHHhhc----CCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHH
Confidence 456899999999 678999999998887753 3456899999999999999999985 6778999999999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCChhhhhhH-HHhCCcccccccccccceEEEeecCccCCcccCCCC-------CCCccE
Q 045431 137 CDISRLQIVFGSNVTMAVQDPSYPAYVDSS-VIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-------VARTDI 208 (433)
Q Consensus 137 ~al~~l~~l~~~gd~Vl~~~p~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 208 (433)
+++.++..++.+||.|++++|+|+.+.... ...| ..++.++.++++++..+++. .+++++
T Consensus 107 ~al~~~~~l~~~Gd~Vlv~~P~Y~~~~~~~~~~~g------------~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~ 174 (433)
T PRK06855 107 DAIAKIYGLLRREARVIGPSPAYSTHSSAEAAHAG------------YPPVTYRLDPENNWYPDLDDLENKVKYNPSIAG 174 (433)
T ss_pred HHHHHHHHhcCCCCeEEEeCCCCchHHHHHHHhcC------------CeEEEEecccccCCCCCHHHHHHHHhcCCCceE
Confidence 999986568899999999999999876442 2335 36777787655555444332 146789
Q ss_pred EEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEeccccccccccccee
Q 045431 209 IFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLG 287 (433)
Q Consensus 209 i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G 287 (433)
++++|||||||.++|.+++++|+++|++||++||+||+|.++.+++. +.++.++.. ..++|+++||||++++||+|+|
T Consensus 175 i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~-~~~~I~~~S~SK~~~~pGlRiG 253 (433)
T PRK06855 175 ILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIG-DVPGIALKGISKELPWPGSRCG 253 (433)
T ss_pred EEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcC-cCCeEEEecCccccCCCcceEE
Confidence 99999999999999999999999999999999999999999988654 456666632 2357999999999988999999
Q ss_pred eeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-hHHHHHHHHHHHHHHHHHHHHhhc-CCeeec
Q 045431 288 WTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-KAVHEVIGFYKENTDIIVETFNSL-GFKVYG 365 (433)
Q Consensus 288 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~ 365 (433)
|+++++........+....+..... ...+++.+.|.++.+++.+... ++++++++.++++++.+.+.|++. |+.+..
T Consensus 254 ~ii~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~ 332 (433)
T PRK06855 254 WIEVYNADKDEVFKKYINSILNAKM-IEVCSTTLPQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEKLKDVPGLKVNR 332 (433)
T ss_pred EEEEeCCchhhHHHHHHHHHHHhhc-cccCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccC
Confidence 9998531100000001122222222 2335788999999999986543 689999999999999999999887 788888
Q ss_pred CCCccEEEEECCCC----------------------------ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc-
Q 045431 366 GKNAPYVWVQFPGR----------------------------SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG- 416 (433)
Q Consensus 366 ~~~g~~~~~~~~~~----------------------------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~- 416 (433)
|.+|+|+|+++++. ++.++...+++++||.+.||+.|+... .++||+|+.
T Consensus 333 p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~~~-~~~Rls~~~~ 411 (433)
T PRK06855 333 TNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCTEL-NGFRVTLLER 411 (433)
T ss_pred CCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCCCC-CceEEEECCC
Confidence 88999999999842 255667777888899999999997543 459999975
Q ss_pred ChhHHHHHHHHHHHhh
Q 045431 417 HRGNVLEACKRFKHLY 432 (433)
Q Consensus 417 ~~~~l~~~l~~l~~~l 432 (433)
+.++|++++++|++++
T Consensus 412 ~~~~i~~~~~~l~~~~ 427 (433)
T PRK06855 412 DEEKFEWIYQTLAEKI 427 (433)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 8999999999999876
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-51 Score=393.97 Aligned_cols=337 Identities=22% Similarity=0.346 Sum_probs=277.3
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDI 139 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~al 139 (433)
+.++|+|+.|+|++++|+.+.+++.+.. .....|+++.|.++||+++|+|+++ ++++++++|++|+|+++++
T Consensus 23 ~~~~i~l~~~~p~~~~~~~~~~a~~~~~------~~~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al 96 (374)
T PRK05839 23 EYKGLDLTIGEPQFETPKFIQDALKNNA------HLLNKYPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVL 96 (374)
T ss_pred CCCeEEcCCCCCCCCCCHHHHHHHHHHh------hccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHH
Confidence 5589999999999888888888887754 2356798899999999999999975 6668999999999999999
Q ss_pred HHH-HHhc--CCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC--CCCccEEEEcCC
Q 045431 140 SRL-QIVF--GSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST--VARTDIIFFCSP 214 (433)
Q Consensus 140 ~~l-~~l~--~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~p 214 (433)
..+ ..++ .+||.|++++|+|+.+...++..| .+++.++.+.++++..++.. ..++++++++||
T Consensus 97 ~~~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g------------~~v~~v~~~~~~~~~~d~~~~~~~~~k~v~i~nP 164 (374)
T PRK05839 97 FNFPQFVLFDKQNPTIAYPNPFYQIYEGAAIASR------------AKVLLMPLTKENDFTPSLNEKELQEVDLVILNSP 164 (374)
T ss_pred HHHHHHHhcCCCCCEEEECCCCchhhHHHHHhcC------------CEEEEeecccccCCcCCcchhhhccccEEEEeCC
Confidence 875 4443 579999999999999999999888 58889998766666666432 357899999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCccccc-----CCCCcceEEEecccccccccccceeee
Q 045431 215 NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEI-----PGAKEVAIETSSFSKYAGFTGVRLGWT 289 (433)
Q Consensus 215 ~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~-----~~~~~~vi~i~S~sK~~~~~G~r~G~l 289 (433)
|||||.++|.+++++|+++|++||++||+||+|.++.+++...++... ....+++|+++||||.|++||+|+||+
T Consensus 165 ~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~i 244 (374)
T PRK05839 165 NNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPGLRSGFI 244 (374)
T ss_pred CCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEeccccccCCccceeEEE
Confidence 999999999999999999999999999999999997654433333321 112368999999999999999999999
Q ss_pred eccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCc
Q 045431 290 VIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNA 369 (433)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g 369 (433)
+++++++ +.+.+.........+.+.|.++..++.+ ..++++.++.++++++.+.+.| ++. .|.+|
T Consensus 245 i~~~~~~--------~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~l---~~~--~p~gg 309 (374)
T PRK05839 245 AGDASIL--------KKYKAYRTYLGCASPLPLQKAAAVAWLD--DEHAEFFRNIYAKNLKLAREIL---GIT--IPPAT 309 (374)
T ss_pred ecCHHHH--------HHHHHHHhhcCCCCChHHHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHhc---CCC--CCCee
Confidence 9988775 6666655444456788899988877764 3577888999999999888766 343 56799
Q ss_pred cEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCC--CCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 370 PYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPG--GEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~--~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
+|+|++++ +..++..++++++||.+.||..|+.. +++++||++..+++++++++++|+++++
T Consensus 310 ~fi~~~~~--~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~~~~~~~~~~~l~~l~~~l~ 373 (374)
T PRK05839 310 FYVWLPVD--NDEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALVYDTPKLEKALEIIKTYLE 373 (374)
T ss_pred EEEEEeCC--ChHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEecCCHHHHHHHHHHHHHHhh
Confidence 99999997 35678888877679999999988643 3689999998789999999999998874
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-51 Score=397.17 Aligned_cols=352 Identities=17% Similarity=0.255 Sum_probs=283.6
Q ss_pred cCCCCceEEecCCCCC----CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEc
Q 045431 59 KYPDAEVISLGIGDTT----EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVS 132 (433)
Q Consensus 59 ~~~~~~~i~l~~g~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~ 132 (433)
...++++|+|+.|+|+ +++|+.+.+++.+++.. .....|++..|.++||+++|+|+.+ ++++++++|++|
T Consensus 28 ~~~~~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~~----~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it 103 (409)
T PLN00143 28 EDDHRLAISFGFGDPSCFECFRTTNIAEDAIVEAVRS----AKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLT 103 (409)
T ss_pred cCCCCceeeCCCCCCCCCCCCCCCHHHHHHHHHHHhC----cCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEe
Confidence 4456789999999998 89999999999998764 3456799999999999999999975 667899999999
Q ss_pred CChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCc
Q 045431 133 DGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VART 206 (433)
Q Consensus 133 ~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 206 (433)
+|+++++.+ +..++++||.|++++|+|+.+...++..| .+++.++.++++++..+++. ..++
T Consensus 104 ~G~~~al~~~~~~l~~~gd~v~v~~P~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 171 (409)
T PLN00143 104 LGCKHAAEIIIKVLARPEANILLPRPGFPDVETYAIFHH------------LEIRHFDLLPEKGWEVDLDAVEAIADENT 171 (409)
T ss_pred cChHHHHHHHHHHHcCCCCEEEEcCCCCcCHHHHHHHcC------------CEEEEEeccCCCCCcCCHHHHHHhcccCC
Confidence 999999997 57788999999999999999999999888 47777877544455444332 2568
Q ss_pred cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCC-CcccccCCCCcceEEEecccccccccccc
Q 045431 207 DIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNP-RSIFEIPGAKEVAIETSSFSKYAGFTGVR 285 (433)
Q Consensus 207 ~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~-~~~~~~~~~~~~vi~i~S~sK~~~~~G~r 285 (433)
++++++|||||||.+++.+++++|+++|++|+++||+||+|.++.+++.+ .++..++. .+++|+++||||.|++||+|
T Consensus 172 ~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~-~~~vi~~~SfSK~f~~pGlR 250 (409)
T PLN00143 172 IAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFAS-IVPVITLGSISKRWMIPGWG 250 (409)
T ss_pred EEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcc-cCcEEEEccchhhcCCCccc
Confidence 88999999999999999999999999999999999999999999887542 44444433 45799999999999999999
Q ss_pred eeeeecc-c-cccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCC-e
Q 045431 286 LGWTVIP-K-ELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGF-K 362 (433)
Q Consensus 286 ~G~l~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~-~ 362 (433)
+||++++ + .++. .....+.+.+.... ...++.++|.++.+++.+....++++.++.++++++.+.+.|++++. .
T Consensus 251 vG~~v~~~p~~~~~--~~~~~~~~~~~~~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~ 327 (409)
T PLN00143 251 LGWLVTCDPSGLLQ--ICEIADSIKKALNP-APFPPTFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKEIPCIM 327 (409)
T ss_pred eEEEEeeCchhhhh--hHHHHHHHHHHHhc-cCCCCchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 9999984 3 3320 00011223333222 22357899999999997554567888999999999999999988743 3
Q ss_pred -eecCCCccEEEEECCC------CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 363 -VYGGKNAPYVWVQFPG------RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 363 -~~~~~~g~~~~~~~~~------~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+..|.+|+|+|++++. .++.+++..+++++||.+.||..|+ .++++||+++.+.+++++++++|++++
T Consensus 328 ~~~~p~gg~f~w~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~--~~~~iRi~~~~~~~~l~~al~rl~~~l 402 (409)
T PLN00143 328 CPQKAEGAFFALVKLNLLLLEDIEDDMEFCLKLAKEESLIILPGVTVG--LKNWLRITFAVEQSSLEDGLGRLKSFC 402 (409)
T ss_pred CCCCCCeeEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEeCccccC--CCCeEEEEEcCCHHHHHHHHHHHHHHH
Confidence 2357799999999973 2466777788788899999999995 368999999888999999999999876
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-51 Score=401.33 Aligned_cols=350 Identities=19% Similarity=0.264 Sum_probs=283.1
Q ss_pred CCCCceEEecCCCCC----CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcC
Q 045431 60 YPDAEVISLGIGDTT----EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSD 133 (433)
Q Consensus 60 ~~~~~~i~l~~g~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~ 133 (433)
.++.++|+|+.|+|+ +.+|+.+.+++.+.+.. .....|++..|.++||+++|+|+.+ ++++++++|++|+
T Consensus 63 ~~~~~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~----~~~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~ 138 (462)
T PLN02187 63 DVNKTILPLGHGDPSVYPCFRTCIEAEDAVVDVLRS----GKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTA 138 (462)
T ss_pred CCCCCeEECCCCCCCCCCCCCCCHHHHHHHHHHHhC----CCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEEeC
Confidence 446789999999987 55678889999888764 2345798999999999999999975 6678999999999
Q ss_pred ChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCcc
Q 045431 134 GAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTD 207 (433)
Q Consensus 134 G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 207 (433)
|+++++.+ +..+++|||+|++++|+|+.|...+...| .+++.++..+++++..+++. ..+++
T Consensus 139 G~~~al~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g------------~~~~~~~l~~~~~~~~d~~~l~~~~~~~~~ 206 (462)
T PLN02187 139 GCNQGIEIVFESLARPNANILLPRPGFPHYDARAAYSG------------LEVRKFDLLPEKEWEIDLEGIEAIADENTV 206 (462)
T ss_pred CHHHHHHHHHHHhcCCCCEEEEeCCCCccHHHHHHHcC------------CEEEEEeCccccCCccCHHHHHHhcCCCcE
Confidence 99999997 57788999999999999999998888888 47777777544445444332 25688
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccce
Q 045431 208 IIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRL 286 (433)
Q Consensus 208 ~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~ 286 (433)
+++++|||||||.+++.+++++|+++|++||++||+||+|.++.+++. ..++..++. ..++|+++||||+|++||+|+
T Consensus 207 ~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~-~~~vi~l~SfSK~f~~pGlRi 285 (462)
T PLN02187 207 AMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFAS-IVPVLTLAGISKGWVVPGWKI 285 (462)
T ss_pred EEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhcc-CCcEEEEecchhhcCCcccee
Confidence 999999999999999999999999999999999999999999888654 345656543 246999999999999999999
Q ss_pred eeeeccc-cccccCCcchhHHHHHHHhhccC--CCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCC-e
Q 045431 287 GWTVIPK-ELLFSDGFPVAKDFNRIVCTCFN--GASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGF-K 362 (433)
Q Consensus 287 G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~-~ 362 (433)
||+++++ +.+. ...+.+......... +++.+.|.++.++|++....++++.++.++++++.+.+.|++++. .
T Consensus 286 G~~v~~~p~~~~----~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~l~~~L~~~~~~~ 361 (462)
T PLN02187 286 GWIALNDPEGVF----ETTKVLQSIKQNLDVTPDPATIIQAALPAILEKADKNFFAKKNKILKHNVDLVCDRLKDIPCVV 361 (462)
T ss_pred EEEEecCchhHH----HHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Confidence 9999853 2110 001344444433322 358899999999997544578999999999999999999998743 2
Q ss_pred -eecCCCccEEEEECCC-----C-ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 363 -VYGGKNAPYVWVQFPG-----R-SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 363 -~~~~~~g~~~~~~~~~-----~-~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+..|.+|+|+|++++. . ++.+++..+++++||.+.||..|+ .+++|||+++.+++++++++++|.+++
T Consensus 362 ~~~~P~gg~fl~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg--~~~~iRis~~~~~e~l~~al~rL~~~l 436 (462)
T PLN02187 362 CPKKPESCTYLLTKLELSLMDNIKDDIDFCVKLAREENLVFLPGDALG--LKNWMRITIGVEAHMLEDALERLKGFC 436 (462)
T ss_pred CCCCCCEeEEEEeecChhhCCCCCCHHHHHHHHHhhCCEEEECccccC--CCCeEEEEeCCCHHHHHHHHHHHHHHH
Confidence 3357789999998752 1 355777788888899999999996 368999999889999999999999876
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-51 Score=393.98 Aligned_cols=343 Identities=25% Similarity=0.390 Sum_probs=290.5
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCC-cEEEcCChHHHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEG-DIFVSDGAKCDI 139 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~-~i~~~~G~~~al 139 (433)
+++|+|+.|.|++++++.+.+++.+.+. .....|++..|.++||+++|+|+.+ +++++++ +|++|+|+++++
T Consensus 28 ~~~i~l~~~~p~~~~~~~~~~a~~~~~~-----~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al 102 (387)
T PRK07683 28 DNLISLTIGQPDFPTPSHVKEAAKRAIT-----ENYTSYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAI 102 (387)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHh-----cCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHH
Confidence 4689999999988888889999999876 2346898889999999999999974 6677888 999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCC---CC--CCCccEEEEcC
Q 045431 140 SR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDL---ST--VARTDIIFFCS 213 (433)
Q Consensus 140 ~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~i~l~~ 213 (433)
.+ +..++++||.|++++|+|+.+...++..| .+++.++.+.+ ++..+. +. .++++++++++
T Consensus 103 ~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g------------~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~i~i~~ 169 (387)
T PRK07683 103 DIAFRTILEPGTEVILPAPIYPGYEPIIRLCG------------AKPVFIDTRST-GFRLTAEALENAITEKTRCVVLPY 169 (387)
T ss_pred HHHHHHhCCCCCEEEEcCCCccchHHHHHHcC------------CEEEEeecCcc-cCCCCHHHHHHhcCcCceEEEEeC
Confidence 97 56778999999999999999999999888 47888887643 444332 11 25789999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccc
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPK 293 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~ 293 (433)
||||||.+++.+++++|+++|+++|++||+||+|+++.+++.+.++.++.+.++++++++||||.+|+||+|+||+++++
T Consensus 170 p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~i~~~~ 249 (387)
T PRK07683 170 PSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTGWRIGFLFAPS 249 (387)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeEEEeeccccccCccceeEEEEcCH
Confidence 99999999999999999999999999999999999988776555666664446789999999999999999999999998
Q ss_pred cccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEE
Q 045431 294 ELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVW 373 (433)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~ 373 (433)
+++ +.+.........+++.++|.++.+++.+ +..++++.++.++++++.+.+.|++.|+.+..+.+|+|+|
T Consensus 250 ~l~--------~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 320 (387)
T PRK07683 250 YLA--------KHILKVHQYNVTCASSISQYAALEALTA-GKDDAKMMRHQYKKRRDYVYNRLISMGLDVEKPTGAFYLF 320 (387)
T ss_pred HHH--------HHHHHHHHhccCCCChHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCeeEEEE
Confidence 875 5565554444455678899999888874 3457888999999999999999999888888888999999
Q ss_pred EECCC--CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 374 VQFPG--RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 374 ~~~~~--~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+.+++ .++.+++..+++++||.+.||..|+..+++++||+++.+++++++++++|.+++
T Consensus 321 ~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~~~~~~~~~~al~~l~~~l 381 (387)
T PRK07683 321 PSIGHFTMSSFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYAYSIETLKEGLDRLEAFL 381 (387)
T ss_pred EecccCCCCHHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 99874 456677778788889999999999866678999999889999999999999876
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-51 Score=393.86 Aligned_cols=345 Identities=29% Similarity=0.471 Sum_probs=288.6
Q ss_pred CCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHH
Q 045431 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCD 138 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~a 138 (433)
.++++|+|+.|.|++++|+.+.+++.+.+. .....|++..|.++||+++|+|+.+ ++.+++++|++|+|++++
T Consensus 28 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~a 102 (388)
T PRK07337 28 AGRDIIHMGIGEPDFTAPEPVVEAAARALR-----RGVTQYTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAA 102 (388)
T ss_pred cCCCEEEeCCcCCCCCCCHHHHHHHHHHHh-----cCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHH
Confidence 345789999999998888888999888775 2346798888999999999999975 667789999999999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEEc
Q 045431 139 ISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFFC 212 (433)
Q Consensus 139 l~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~ 212 (433)
+.+ +..++++||+|++++|+|+.+...++..| .+++.++.+.++++..+++. .+++++|+++
T Consensus 103 l~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~ 170 (388)
T PRK07337 103 LLLACLALVERGDEVLMPDPSYPCNRHFVAAAE------------GRPVLVPSGPAERFQLTAADVEAAWGERTRGVLLA 170 (388)
T ss_pred HHHHHHHhcCCCCEEEEeCCCchhhHHHHHHcC------------CEEEEeecCCccCCcCCHHHHHhhcCccceEEEEE
Confidence 997 57788999999999999999998888888 47788888654444444332 2578999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecc
Q 045431 213 SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIP 292 (433)
Q Consensus 213 ~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~ 292 (433)
+||||||.+++.+++++|+++|+++++++|+||+|.++.+++.+.+...+ .+++|+++||||.+|++|+|+||++++
T Consensus 171 ~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~---~~~vi~~~S~SK~~~~~G~RiG~~~~~ 247 (388)
T PRK07337 171 SPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSALSL---GDDVITINSFSKYFNMTGWRLGWLVVP 247 (388)
T ss_pred CCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcChhhc---cCCEEEEEechhhcCCchhheeeeecC
Confidence 99999999999999999999999999999999999988776544444333 457899999999999999999999999
Q ss_pred ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCee-ecCCCccE
Q 045431 293 KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKV-YGGKNAPY 371 (433)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~-~~~~~g~~ 371 (433)
++++ +.+.........+.+.+.|.++..++.+....++++.++.++++++.+.+.|++.|+.+ ..|.+|+|
T Consensus 248 ~~l~--------~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~p~~g~f 319 (388)
T PRK07337 248 EALV--------GTFEKLAQNLFICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALESLGFKVPVMPDGAFY 319 (388)
T ss_pred HHHH--------HHHHHHHHHhccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCeeEE
Confidence 8875 66766665555567899999999998755555668889999999999999999987764 46789999
Q ss_pred EEEECCC------CChHHHHHHHHHcCCeEecCCCCCCC-CCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 372 VWVQFPG------RSSWDVFSEILEKTHVVTTPGSGFGP-GGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 372 ~~~~~~~------~~~~~~~~~l~~~~gi~v~~g~~f~~-~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
+|++++. .++.++...+++++||.+.||..|+. .+.+++||+++.+++++++++++|++++.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~~~~~~l~~~l~rl~~~l~ 388 (388)
T PRK07337 320 VYADCRGVAHPAAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYATSMSRLEEAVARLGKLFG 388 (388)
T ss_pred EEEecccccCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEecCCHHHHHHHHHHHHHHhC
Confidence 9999974 35667777888888999999999974 34689999998889999999999998763
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-51 Score=393.06 Aligned_cols=340 Identities=20% Similarity=0.315 Sum_probs=283.9
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCC-CcEEEcCChHHHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEE-GDIFVSDGAKCDI 139 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~-~~i~~~~G~~~al 139 (433)
.++|+|+.|+|++++++.+.+++.+.+.. ....|+++.|.++||+++++++++ +..+++ ++|++|+|+++++
T Consensus 29 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~-----~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al 103 (384)
T PRK12414 29 HDALNLSQGAPNFAPDPALVEGVARAMRD-----GHNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGL 103 (384)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHHHh-----CCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHH
Confidence 35899999999988899999998887652 346799999999999999999976 444444 6899999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCC---C--CCCccEEEEcC
Q 045431 140 SR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS---T--VARTDIIFFCS 213 (433)
Q Consensus 140 ~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~i~l~~ 213 (433)
.+ +..++.+||+|++++|+|..+...++.+| .+++.++.+.+ ++..+++ + .+++++|+++|
T Consensus 104 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g------------~~~~~v~~~~~-~~~~d~~~l~~~l~~~~~~v~i~~ 170 (384)
T PRK12414 104 YAAISALVHPGDEVIYFEPSFDSYAPIVRLQG------------ATPVAIKLSPE-DFRVNWDEVAAAITPRTRMIIVNT 170 (384)
T ss_pred HHHHHHhcCCCCEEEEeCCCccchHHHHHHcC------------CEEEEEecCcc-ccccCHHHHHhhcCcccEEEEEcC
Confidence 87 67889999999999999999999988888 47778887643 2333322 1 25789999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccceeeeecc
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIP 292 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~ 292 (433)
||||||.++|.+++++|+++|++|+++||+||+|.++.+++. ..++.+++...+++|+++||||.+|+||+|+||++++
T Consensus 171 p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v~~ 250 (384)
T PRK12414 171 PHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCLAP 250 (384)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCccceEEEEecC
Confidence 999999999999999999999999999999999999888753 3355555444568999999999999999999999999
Q ss_pred ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEE
Q 045431 293 KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYV 372 (433)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~ 372 (433)
++++ +.+.+.......+++.+.|.++.++|++.. +..+.++.++++++.+.+.|+++|+.+.++.+|+|+
T Consensus 251 ~~l~--------~~l~~~~~~~~~~~s~~~q~a~~~~l~~~~--~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~gg~~~ 320 (384)
T PRK12414 251 AELM--------DEIRKVHQFMVFSADTPMQHAFAEALAEPA--SYLGLGAFYQRKRDLLARELAGSRFELLPSEGSFFM 320 (384)
T ss_pred HHHH--------HHHHHHHhheecCCCcHHHHHHHHHhcCCh--HHHHHHHHHHHHHHHHHHHHHhCCCeecCCCcceEE
Confidence 9885 667776665666789999999999997533 234678899999999999999999888888899999
Q ss_pred EEECCC---CChHHHHHHHHHcCCeEecCCCCCCCCC--CCeEEEeeccChhHHHHHHHHHHH
Q 045431 373 WVQFPG---RSSWDVFSEILEKTHVVTTPGSGFGPGG--EGFIRVSAFGHRGNVLEACKRFKH 430 (433)
Q Consensus 373 ~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~f~~~~--~~~iRi~~~~~~~~l~~~l~~l~~ 430 (433)
|+++++ ..+.+++..+++++||.+.||+.|+..+ .+++||+++.+++++++++++|.+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~~~~~~~~~~~~rl~~ 383 (384)
T PRK12414 321 LARFRHFSDESDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFSKDDATLVEGARRLCS 383 (384)
T ss_pred EEcccccCCCCHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEecCCHHHHHHHHHHHhh
Confidence 999863 3566777777888899999999996433 579999998889999999999976
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-51 Score=394.92 Aligned_cols=347 Identities=27% Similarity=0.463 Sum_probs=292.0
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCC-cEEEcCChHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEG-DIFVSDGAKCD 138 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~-~i~~~~G~~~a 138 (433)
+.++++|+.|.|+.+.|+.+++++.+.+.. .....|+++.|.++||+++++|+.+ ++.++++ +|++|+|++++
T Consensus 28 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~----~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~ 103 (395)
T PRK08175 28 GEDIIDFSMGNPDGPTPPHIVEKLCEVAQR----PDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEG 103 (395)
T ss_pred CCCeEEcCCCCCCCCCCHHHHHHHHHHHhC----CCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHH
Confidence 457899999999877788888888877653 3456899999999999999999975 6777776 89999999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEEc
Q 045431 139 ISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFFC 212 (433)
Q Consensus 139 l~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~ 212 (433)
+.+ +..+++|||+|++++|+|+.+...++..| .+++.++.+.++++..++++ .+++++++++
T Consensus 104 l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~l~~~l~~~~~~~~~v~i~ 171 (395)
T PRK08175 104 LAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAG------------AQVRSVPLVEGVDFFNELERAIRESYPKPKMMILG 171 (395)
T ss_pred HHHHHHHhCCCCCEEEEcCCCCcchHHHHHHcC------------CeEEEEecccCCCcHHHHHHHHhhccCCceEEEEe
Confidence 987 57788999999999999999988888888 47888888766555444432 2478999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccceeeeec
Q 045431 213 SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVI 291 (433)
Q Consensus 213 ~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~ 291 (433)
+||||||.+++.+++++|+++|++||++||+||+|.++.+++. +.++.++++..+++++++||||.+|+||+|+||+++
T Consensus 172 ~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~ 251 (395)
T PRK08175 172 FPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVG 251 (395)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccccCcchhheeeeC
Confidence 9999999999999999999999999999999999999887653 455555554456789999999999999999999999
Q ss_pred cccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccE
Q 045431 292 PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPY 371 (433)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~ 371 (433)
+++++ +.+.+.......+++.+.|.++..++.+ ...+++++++.++++++.+.+.|+++|+.+..|.+|+|
T Consensus 252 ~~~l~--------~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~p~~g~~ 322 (395)
T PRK08175 252 NPELV--------SALARIKSYHDYGTFTPLQVAAIAALEG-DQQCVRDIAEQYKRRRDVLVKGLHEAGWMVEMPKASMY 322 (395)
T ss_pred CHHHH--------HHHHHHHhhcccCCCcHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEE
Confidence 98885 6666666555566778889988888864 35688999999999999999999999988877889999
Q ss_pred EEEECCCC----ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 372 VWVQFPGR----SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 372 ~~~~~~~~----~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
+|++++.. ++.+++..+++++||.+.||..|+..+++++||++..+.+.+++++++|+++++
T Consensus 323 i~i~l~~~~~~~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~~~~~~~~~~al~~l~~~l~ 388 (395)
T PRK08175 323 VWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIENRDRIRQAIRGIKAMFR 388 (395)
T ss_pred EEEECCcccCCCCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 99999842 356777788877899999999997666789999998789999999999998763
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-51 Score=395.69 Aligned_cols=349 Identities=20% Similarity=0.305 Sum_probs=284.9
Q ss_pred CCceEEecCCCCC----CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCCh
Q 045431 62 DAEVISLGIGDTT----EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGA 135 (433)
Q Consensus 62 ~~~~i~l~~g~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~ 135 (433)
+.++|+|+.|+|+ +++|+.+.+++.+++.. .....|++..|.++||+++++++.+ +..+++++|++|+|+
T Consensus 51 ~~~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~----~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~ 126 (430)
T PLN00145 51 PRPVLPLGHGDPSAFPCFRTAPEAEDAVAAALRS----GKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGC 126 (430)
T ss_pred CCCeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHc----CcCCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCH
Confidence 5679999999995 67788999999988864 2345798889999999999999975 666789999999999
Q ss_pred HHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEE
Q 045431 136 KCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDII 209 (433)
Q Consensus 136 ~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i 209 (433)
++++.+ +..++++||+|++++|+|+.|.......| .+++.++..++.++..+++. .++++++
T Consensus 127 ~~al~l~~~~l~~~Gd~Vlv~~P~y~~y~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i 194 (430)
T PLN00145 127 AQAIEIIMSVLAQPGANILLPRPGYPLYEARAVFSG------------LEVRHFDLLPERGWEVDLEGVEALADENTVAM 194 (430)
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHcC------------CEEEEeeCCcccCCcCCHHHHHHHhCcCceEE
Confidence 999998 57778999999999999999988888888 47777776555555555432 3578999
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccceee
Q 045431 210 FFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGW 288 (433)
Q Consensus 210 ~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~ 288 (433)
+++|||||||.+++.+++++|+++|+++|++||+||+|.++.+++. ..++..++. .+++|+++||||.|++||||+||
T Consensus 195 ~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~~~pG~RlG~ 273 (430)
T PLN00145 195 VIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGE-VAPVLTLGSISKRWVVPGWRLGW 273 (430)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcc-cCcEEEEeccccccCCCCeeEEE
Confidence 9999999999999999999999999999999999999999888753 455555544 46899999999999999999999
Q ss_pred eecc--ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCee-e
Q 045431 289 TVIP--KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKV-Y 364 (433)
Q Consensus 289 l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~-~ 364 (433)
++++ +.++. ..++...+.... .....++.+.|.++..+|++....++++.++.++++++.+.+.|+++ |+.+ .
T Consensus 274 iv~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~ 350 (430)
T PLN00145 274 IATCDPNGILK--ETKVVDSIRNYL-NISTDPATFVQGAIPQIIANTKEEFFTKTLGLLKETADICYEKIKEIKCITCPH 350 (430)
T ss_pred EEEecchhhhh--hhHHHHHHHHHh-cccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc
Confidence 9973 33321 001112333332 22334678999999999985445788999999999999999999987 7775 4
Q ss_pred cCCCccEEEEECCC------CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 365 GGKNAPYVWVQFPG------RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 365 ~~~~g~~~~~~~~~------~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
.|++|+|+|++++. .++.++...+++++||.+.||..|+. ++++||+++.+.+++++++++|++++
T Consensus 351 ~P~ga~y~~v~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~--~~~lRis~~~~~~~l~~al~rl~~~~ 422 (430)
T PLN00145 351 KPEGSMFVMVKLDLSCLSGIKDDMDFCCKLAKEESVVVLPGSALGM--KNWLRITFAIDPPSLEDGLERLKSFC 422 (430)
T ss_pred CCCeeeEEEeccChhhcCCCCCHHHHHHHHHHhCCEEEeCccccCC--CCeEEEEeCCCHHHHHHHHHHHHHHH
Confidence 68899999999862 24567888888888999999999974 58999999888999999999999876
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-51 Score=393.82 Aligned_cols=342 Identities=25% Similarity=0.443 Sum_probs=282.4
Q ss_pred CCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCC--CCCC-cEEEcCCh
Q 045431 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLG--IEEG-DIFVSDGA 135 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~--~~~~-~i~~~~G~ 135 (433)
.+.++|+|+.|+|++++|+.+.+++.+.+. ....|+++.|.++||+++|+|+.+ +++ ++++ +|++|+|+
T Consensus 26 ~~~~~i~l~~~~p~~~~~~~~~~a~~~~~~------~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga 99 (393)
T TIGR03538 26 ASKPPIALSIGEPKHPTPAFVLEALRENLH------GLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGT 99 (393)
T ss_pred cCCCeEEecCCCCCCCCCHHHHHHHHHHhh------ccCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCc
Confidence 456799999999999889999999988653 346798899999999999999975 443 6774 89999999
Q ss_pred HHHHHH-HHHhcCCCCE--EEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCcc
Q 045431 136 KCDISR-LQIVFGSNVT--MAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTD 207 (433)
Q Consensus 136 ~~al~~-l~~l~~~gd~--Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 207 (433)
++++.+ +..+++|||. |++++|+|+.+...++..| .+++.++.+.++++..+++. ..+++
T Consensus 100 ~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k 167 (393)
T TIGR03538 100 REALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAG------------AEPYFLNCTAENGFLPDFDAVPESVWRRCQ 167 (393)
T ss_pred HHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHHhcC------------CeEEEeeccccCCCCCCHHHHHHHHhhcce
Confidence 999997 5778899986 9999999999999988888 48888888766566555322 24789
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC--CCCccc-c---cC-CCCcceEEEeccccccc
Q 045431 208 IIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDD--NPRSIF-E---IP-GAKEVAIETSSFSKYAG 280 (433)
Q Consensus 208 ~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~--~~~~~~-~---~~-~~~~~vi~i~S~sK~~~ 280 (433)
+|+++|||||||.+++.+++++|+++|++|+++||+||+|.++.+++ .+.+.. . .. ...+++|+++||||.++
T Consensus 168 ~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~ 247 (393)
T TIGR03538 168 LLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSN 247 (393)
T ss_pred EEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhcC
Confidence 99999999999999999999999999999999999999999987764 222222 1 11 12468999999999998
Q ss_pred ccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcC
Q 045431 281 FTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLG 360 (433)
Q Consensus 281 ~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 360 (433)
++|+|+||++++++++ +.+.+.......+++.+.|.++.+.+.. .+++++.++.++++++.+.+.|+++
T Consensus 248 ~~GlRvG~~i~~~~l~--------~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~L~~~- 316 (393)
T TIGR03538 248 LPGLRSGFVAGDAEIL--------KAFLRYRTYHGCAMPIPTQLASIAAWND--EQHVRENRALYREKFAAVLEILGQV- 316 (393)
T ss_pred CcccceEEEecCHHHH--------HHHHHHHHhhccCcCHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 9999999999998885 6666655544556788999988888753 3678899999999999999999876
Q ss_pred CeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCC------CCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 361 FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGP------GGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 361 ~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~------~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+.+..|.+|+|+|++++ .++.++...+++++||.+.||+.|+. .+.+++||+++.+++++++++++|++++
T Consensus 317 ~~~~~p~gg~f~~~~~~-~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~~~~~~l~~~l~~l~~~~ 393 (393)
T TIGR03538 317 LDLELPDAGFYLWPKVP-GDDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALVAPLEECVEAAERIRSFI 393 (393)
T ss_pred CcccCCCeeEEEEEECC-CCHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEecCCHHHHHHHHHHHHHhC
Confidence 55567889999999998 45677777887778999999999852 2367999999889999999999998763
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-51 Score=363.26 Aligned_cols=364 Identities=25% Similarity=0.388 Sum_probs=313.5
Q ss_pred CCcHHHHHHHHHHHhcCCC----CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHh
Q 045431 44 YLFPEIARRKAAHMLKYPD----AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFY 119 (433)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~----~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~ 119 (433)
|.+.++..+..+...+|+. .+++.|.++++|++.||.+.+|+.+.+. .+.++|+ .+..++-++++.|.+
T Consensus 2 ~~F~~~~~r~~t~s~KWd~~~g~~DvlPmWVADMDf~~pp~i~~Al~~rvd-----hGvfGY~--~~~~~~~~ai~~w~~ 74 (388)
T COG1168 2 YDFDTVIERLGTNSLKWDAHPGNEDVLPMWVADMDFPTPPEIIEALRERVD-----HGVFGYP--YGSDELYAAIAHWFK 74 (388)
T ss_pred CchhhhhhhcCCCceeccccCCCCCcceeeeecccCCCCHHHHHHHHHHHh-----cCCCCCC--CCCHHHHHHHHHHHH
Confidence 3445555555555555543 4799999999999999999999999997 6788994 688999999999998
Q ss_pred c--cCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecC-ccCC
Q 045431 120 K--DLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCT-AENG 195 (433)
Q Consensus 120 ~--~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~ 195 (433)
+ ++.++++-|++++|...++.+ +..+.+|||.|++..|.|+++....+..|+ +++..|+. +++.
T Consensus 75 ~r~~~~i~~e~i~~~p~VVpgi~~~I~~~T~~gd~Vvi~tPvY~PF~~~i~~n~R------------~~i~~pL~~~~~~ 142 (388)
T COG1168 75 QRHQWEIKPEWIVFVPGVVPGISLAIRALTKPGDGVVIQTPVYPPFYNAIKLNGR------------KVIENPLVEDDGR 142 (388)
T ss_pred HhcCCCCCcceEEEcCcchHhHHHHHHHhCcCCCeeEecCCCchHHHHHHhhcCc------------EEEeccccccCCc
Confidence 5 778889999999999999997 789999999999999999999999999995 67777765 3344
Q ss_pred cccCCCC------CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC-CCCcccccCC-CCc
Q 045431 196 FFPDLST------VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDD-NPRSIFEIPG-AKE 267 (433)
Q Consensus 196 ~~~~~~~------~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~~~~-~~~ 267 (433)
+..|++. ..++++.+|||||||||.+++.+++.+|.++|.+||++||+||+|+++++.+ .+.++.++.. ..+
T Consensus 143 y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~ 222 (388)
T COG1168 143 YEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFAD 222 (388)
T ss_pred EEecHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhc
Confidence 5445332 3567999999999999999999999999999999999999999999999988 4666665542 247
Q ss_pred ceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHH
Q 045431 268 VAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKE 347 (433)
Q Consensus 268 ~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 347 (433)
+.|++.|.||+|+++|+++++++.+++.+. .+.+.++......++|.++..|..++++ .+..|++++.+.++.
T Consensus 223 ~~it~~saSKtFNlaGL~~a~~Ii~n~~lr------~~~~~~l~~~~~~~~n~lg~~A~~aAY~-~G~~WLd~L~~yl~~ 295 (388)
T COG1168 223 NSITLTSASKTFNLAGLKCAYIIISNRELR------AKFLKRLKRNGLHGPSALGIIATEAAYN-QGEPWLDELLEYLKD 295 (388)
T ss_pred ceEEEeeccccccchhhhheeEEecCHHHH------HHHHHHHHHhcCCCCchHHHHHHHHHHH-hchHHHHHHHHHHHH
Confidence 899999999999999999999998887752 1334556666778899999999999998 566899999999999
Q ss_pred HHHHHHHHHhhc--CCeeecCCCccEEEEECC--CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHH
Q 045431 348 NTDIIVETFNSL--GFKVYGGKNAPYVWVQFP--GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLE 423 (433)
Q Consensus 348 ~~~~l~~~l~~~--g~~~~~~~~g~~~~~~~~--~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~ 423 (433)
+++++.+.|.++ ++.+..|++++.+|+++. +.++.++...++++.+|.+.+|..||..+++++|++++.+.+.+++
T Consensus 296 N~~~~~~~l~~~~P~v~v~~p~gTYL~WLD~r~l~l~d~~l~~~ll~~akVal~~G~~FG~~g~gf~RlN~acpr~~L~e 375 (388)
T COG1168 296 NRDYVADFLNKHLPGVKVTEPQGTYLAWLDCRELGLDDSELAEFLLEEAKVALSPGSTFGEEGSGFVRLNFACPRAILEE 375 (388)
T ss_pred HHHHHHHHHHhhCCCcEEecCCCceeeeeeccccCCChHHHHHHHHHhhcEeccCCCccCcCCCceEEEecCCCHHHHHH
Confidence 999999999987 899999999999999998 5666788899999999999999999999999999999999999999
Q ss_pred HHHHHHHhhC
Q 045431 424 ACKRFKHLYK 433 (433)
Q Consensus 424 ~l~~l~~~l~ 433 (433)
++++|+.+++
T Consensus 376 al~ri~~al~ 385 (388)
T COG1168 376 ALERLKRALK 385 (388)
T ss_pred HHHHHHHHHh
Confidence 9999998764
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-51 Score=393.74 Aligned_cols=353 Identities=20% Similarity=0.286 Sum_probs=284.4
Q ss_pred CCCCceEEecCCCCC----CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcC
Q 045431 60 YPDAEVISLGIGDTT----EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSD 133 (433)
Q Consensus 60 ~~~~~~i~l~~g~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~ 133 (433)
..+.++|+|+.|+|+ +++|+.+.+++.+++.. .....|++..|.++||+++++|+.+ ++++++++|++|+
T Consensus 28 ~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~ 103 (409)
T PLN02656 28 ENGKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQS----NKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITS 103 (409)
T ss_pred ccCCeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhc----CCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEeC
Confidence 356689999999998 78899999999988863 3456899999999999999999975 6678899999999
Q ss_pred ChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCcc
Q 045431 134 GAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTD 207 (433)
Q Consensus 134 G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 207 (433)
|+++++.+ +..++++||+|++++|+|+.+.......| .+++.++.+++.++..+++. .++++
T Consensus 104 G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g------------~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~ 171 (409)
T PLN02656 104 GCTQAIDVALSMLARPGANILLPRPGFPIYELCAAFRH------------LEVRYVDLLPEKGWEVDLDAVEALADQNTV 171 (409)
T ss_pred ChHHHHHHHHHHHhCCCCeEEEeCCCCCcHHHHHHHcC------------CEEEEEeCCCcCCCCCCHHHHHHHhccCce
Confidence 99999997 57778999999999999999988888888 47888887654454444332 25688
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccce
Q 045431 208 IIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRL 286 (433)
Q Consensus 208 ~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~ 286 (433)
+++++|||||||.+++.+++++|+++|++|+++||+||+|.++.+++. ..++..++. .+++|+++||||+|++||+|+
T Consensus 172 ~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~vi~~~SfSK~f~~pGlRi 250 (409)
T PLN02656 172 ALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGS-IVPVLTLGSLSKRWIVPGWRL 250 (409)
T ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcc-cCcEEEEcccchhccCcceeE
Confidence 999999999999999999999999999999999999999999988764 345555543 467999999999988999999
Q ss_pred eeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCe-ee
Q 045431 287 GWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFK-VY 364 (433)
Q Consensus 287 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~-~~ 364 (433)
||+++++.-.....+.+.+.+...... ..+++.++|.++.+++++....++++.++.++++++.+.+.|+++ ++. +.
T Consensus 251 G~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~ 329 (409)
T PLN02656 251 GWFVTTDPSGSFRDPKIVERIKKYFDI-LGGPATFIQAAVPTILEQTDESFFKKTINILKQSSDICCDRIKEIPCITCPH 329 (409)
T ss_pred EEEEEeCcccccccHHHHHHHHHHHhh-hcCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCc
Confidence 999985310000000113555544332 345789999999999985445678999999999999999999987 333 34
Q ss_pred cCCCccEEEEECCC-----C-ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 365 GGKNAPYVWVQFPG-----R-SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 365 ~~~~g~~~~~~~~~-----~-~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
.|.+|+|+|++++. . ++.+++..+++++||.+.||+.|+. ++++||+++.+++++++++++|++++
T Consensus 330 ~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~--~~~iRi~~~~~~e~l~eal~rl~~~~ 401 (409)
T PLN02656 330 KPEGSMAVMVKLNLSLLEDISDDIDFCFKLAREESVIILPGTAVGL--KNWLRITFAADPSSLEEALGRIKSFY 401 (409)
T ss_pred CCCeEEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEecchhcCC--CCeEEEEeCCCHHHHHHHHHHHHHHH
Confidence 67899999999862 1 3446666777788999999999963 68999999889999999999999875
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=391.48 Aligned_cols=344 Identities=20% Similarity=0.287 Sum_probs=286.4
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCC-cEEEcCChHHHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEG-DIFVSDGAKCDI 139 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~-~i~~~~G~~~al 139 (433)
.++|+|+.|.|+.+.|+.+++++.+.+. .....|++..|.++||+++++++.+ ++.++++ +|++|+|+++++
T Consensus 26 ~~~i~l~~g~p~~~~p~~~~~~~~~~~~-----~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al 100 (387)
T PRK08912 26 HGAINLGQGFPDDPGPEDVRRAAADALL-----DGSNQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEAL 100 (387)
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHh-----cCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHH
Confidence 3689999999988888888888888764 2346799999999999999999975 6667888 999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCC---C--CCCccEEEEcC
Q 045431 140 SR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS---T--VARTDIIFFCS 213 (433)
Q Consensus 140 ~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~i~l~~ 213 (433)
.+ +..++++||+|++++|+|+.+...++..| .+++.++.+.+ ++..+++ + .+++++++++|
T Consensus 101 ~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g------------~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~v~l~~ 167 (387)
T PRK08912 101 AAALLALVEPGDEVVLFQPLYDAYLPLIRRAG------------GVPRLVRLEPP-HWRLPRAALAAAFSPRTKAVLLNN 167 (387)
T ss_pred HHHHHHhcCCCCEEEEeCCCchhhHHHHHHcC------------CEEEEEecCcc-cCcCCHHHHHHHhCccceEEEEeC
Confidence 86 57788999999999999999999999888 47777877542 2222322 1 25788999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccceeeeecc
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIP 292 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~ 292 (433)
||||||.++|.+++++|+++|++|+++||+||+|.++.+++. ..++.++++..+++++++||||.+|++|+|+||++++
T Consensus 168 p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~ 247 (387)
T PRK08912 168 PLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGFVCAA 247 (387)
T ss_pred CCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcCceeEEEecC
Confidence 999999999999999999999999999999999999887653 4456666544578999999999999999999999999
Q ss_pred ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEE
Q 045431 293 KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYV 372 (433)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~ 372 (433)
++++ +.+.+.......+.+...|.++..++.. ..+++++.++.++++++.+.+.|++.|+.+.++.+++|+
T Consensus 248 ~~~~--------~~l~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~g~~~l 318 (387)
T PRK08912 248 PPLL--------RVLAKAHQFLTFTTPPNLQAAVAYGLGK-PDDYFEGMRADLARSRDRLAAGLRRIGFPVLPSQGTYFL 318 (387)
T ss_pred HHHH--------HHHHHHHhhccccCChHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEE
Confidence 8885 5666555444455677788888887763 346788999999999999999999999888888889999
Q ss_pred EEECCC----CChHHHHHHHHHcCCeEecCCCCCCC--CCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 373 WVQFPG----RSSWDVFSEILEKTHVVTTPGSGFGP--GGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 373 ~~~~~~----~~~~~~~~~l~~~~gi~v~~g~~f~~--~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
|++++. .++.++...+++++||.+.||..|+. ...+++||+++.+++++++++++|+++++
T Consensus 319 ~~~l~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~~~~~~l~~~l~rl~~~l~ 385 (387)
T PRK08912 319 TVDLAPLGLAEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAKRDATLDEAVERLAAARR 385 (387)
T ss_pred EecccccCCCCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 999974 35667888887778999999999853 34689999998889999999999998764
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-51 Score=401.70 Aligned_cols=348 Identities=20% Similarity=0.300 Sum_probs=276.1
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcc-------cCCCCCCCCCCCCCHHHHHHHHHHHhc--c--CCCCCCcEEE
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALS-------TQEGYSGYGAEQGEKPLRAAIASTFYK--D--LGIEEGDIFV 131 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~Y~~~~g~~~lr~~la~~l~~--~--~~~~~~~i~~ 131 (433)
..+|+|+.+++.++. +.+.+.+.+...... .......|++..|.++||++||+|+.+ + ..+++++|++
T Consensus 38 ~g~i~L~~~En~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~~~Iii 116 (468)
T PLN02450 38 SGIIQMGLAENQLSF-DLIESWLAKNPDAAGLKRNGQSIFRELALFQDYHGLPAFKNALAEFMSEIRGNKVTFDPNKLVL 116 (468)
T ss_pred CeeEEeehhHhHhhH-HHHHHHHHhCchhhhcccccccchhhhhcCCCCCChHHHHHHHHHHHHHhhCCCCCcChHHeEE
Confidence 368999999986544 444444443221000 012344688889999999999999975 4 3368999999
Q ss_pred cCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHH-HhCCcccccccccccceEEEeecCccCCcccCCCC-------
Q 045431 132 SDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSV-IMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST------- 202 (433)
Q Consensus 132 ~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 202 (433)
|+|+++++.+ +..+++|||.|++++|+|+.+...+. ..| .+++.++.+.++++..+++.
T Consensus 117 t~Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~~~~~~~~~~g------------~~~v~v~~~~~~~~~~~~~~le~~~~~ 184 (468)
T PLN02450 117 TAGATSANETLMFCLAEPGDAFLLPTPYYPGFDRDLKWRTG------------VEIVPIHCSSSNGFQITESALEEAYQQ 184 (468)
T ss_pred ccChHHHHHHHHHHhCCCCCEEEECCCCCCchHHHHhhcCC------------cEEEEEecCCccCCcCCHHHHHHHHHH
Confidence 9999999997 57788999999999999999988777 467 47888888655566554321
Q ss_pred ----CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccC--------CCCcce
Q 045431 203 ----VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIP--------GAKEVA 269 (433)
Q Consensus 203 ----~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~--------~~~~~v 269 (433)
..++++|++||||||||.++|.+++++|+++|++|+++||+||+|+++.+++. +.++.+.. ...+++
T Consensus 185 ~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~v 264 (468)
T PLN02450 185 AQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRV 264 (468)
T ss_pred HHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcE
Confidence 13789999999999999999999999999999999999999999999877653 33433321 124689
Q ss_pred EEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh--hHHHHHHHHHHH
Q 045431 270 IETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF--KAVHEVIGFYKE 347 (433)
Q Consensus 270 i~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~--~~~~~~~~~~~~ 347 (433)
++++||||.+|++|+|+||++++++.+ .+.+.+.. ....++.++|.++..+|++..+ .++++.++.+++
T Consensus 265 i~l~S~SK~~~l~GlRiG~li~~~~~l-------~~~~~~~~--~~~~~s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~ 335 (468)
T PLN02450 265 HIVYSLSKDLGLPGFRVGAIYSNDEMV-------VSAATKMS--SFGLVSSQTQYLLSALLSDKKFTKNYLEENQKRLKQ 335 (468)
T ss_pred EEEEeccccCCCCCccEEEEEECCHHH-------HHHHHHHh--hcCCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence 999999999999999999999987653 24344332 2234789999999999987654 368889999999
Q ss_pred HHHHHHHHHhhcCCeeecCCCccEEEEECCCC-------ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc-Chh
Q 045431 348 NTDIIVETFNSLGFKVYGGKNAPYVWVQFPGR-------SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG-HRG 419 (433)
Q Consensus 348 ~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~-------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~ 419 (433)
+++.+.+.|+++|+.+.++.+|+|+|++++.. ...++...+++++||.+.||+.|+..++++|||+|+. +++
T Consensus 336 rr~~l~~~L~~~gi~~~~~~~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~~~~g~~Rl~f~~~~~~ 415 (468)
T PLN02450 336 RQKKLVSGLEAAGIKCLKSNAGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHCTEPGWFRVCFANMSEE 415 (468)
T ss_pred HHHHHHHHHHHcCCcccCCCceEEEEEEchHhcCcCCchHHHHHHHHHHHhCCEEEeCccccCCCCCCEEEEEecCCCHH
Confidence 99999999999999888888999999999721 1245677778878999999999987678899999985 899
Q ss_pred HHHHHHHHHHHhh
Q 045431 420 NVLEACKRFKHLY 432 (433)
Q Consensus 420 ~l~~~l~~l~~~l 432 (433)
++++++++|++++
T Consensus 416 ~l~~~l~ri~~~l 428 (468)
T PLN02450 416 TLDLAMKRLKSFV 428 (468)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999876
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=390.71 Aligned_cols=342 Identities=22% Similarity=0.279 Sum_probs=288.3
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCC-cEEEcCChHHHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEG-DIFVSDGAKCDI 139 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~-~i~~~~G~~~al 139 (433)
.++|+|+.|.|+++.++.+.+++.+.+.. ....|++..|.++||+++++++.+ +...+++ +|++|+|+++++
T Consensus 30 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~-----~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al 104 (386)
T PRK09082 30 HGAINLSQGFPDFDGPPYLVEALAYAMAA-----GHNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEAL 104 (386)
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHHc-----CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHH
Confidence 46899999999988888889988887752 346798899999999999999986 4444554 899999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEEcC
Q 045431 140 SR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFFCS 213 (433)
Q Consensus 140 ~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~~ 213 (433)
.+ +..++.+||+|++++|+|+.+...++.+| .+++.++.+.+ ++..+++. .++++++++++
T Consensus 105 ~~~~~~~~~~gd~Vli~~p~y~~~~~~~~~~g------------~~~~~~~~~~~-~~~~d~~~l~~~~~~~~~~v~l~~ 171 (386)
T PRK09082 105 FAAILALVRPGDEVIVFDPSYDSYAPAIELAG------------GRAVRVALQPP-DFRVDWQRFAAAISPRTRLIILNT 171 (386)
T ss_pred HHHHHHHcCCCCEEEEeCCCchhhHHHHHHcC------------CEEEEEecCcc-cccCCHHHHHHhcCccceEEEEeC
Confidence 87 57788999999999999999999999888 47888888643 33333221 35789999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccceeeeecc
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIP 292 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~ 292 (433)
||||||.+++.+++++|+++|++|++++|+||+|+++.+++. +.++.++++..+++++++||||.+|++|+|+||++++
T Consensus 172 p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~iv~~ 251 (386)
T PRK09082 172 PHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCVAP 251 (386)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchhhhhhhhhCC
Confidence 999999999999999999999999999999999999888653 4566666555678999999999999999999999999
Q ss_pred ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEE
Q 045431 293 KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYV 372 (433)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~ 372 (433)
++++ +.+.+........++.++|.++.+++.. ..++++++++.++++++.+.+.|++.|+.+.++.+|+|+
T Consensus 252 ~~l~--------~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~g~~~~ 322 (386)
T PRK09082 252 AALS--------AEFRKVHQYNTFTVNTPAQLALADYLRA-EPEHYLELPAFYQAKRDRFRAALANSRFKLLPCEGTYFQ 322 (386)
T ss_pred HHHH--------HHHHHHHhhhcCCCChHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCeeEEE
Confidence 8885 6677666555566899999988888863 346788899999999999999999989998888899999
Q ss_pred EEECC---CCChHHHHHHHHHcCCeEecCCCCCC--CCCCCeEEEeeccChhHHHHHHHHHHHh
Q 045431 373 WVQFP---GRSSWDVFSEILEKTHVVTTPGSGFG--PGGEGFIRVSAFGHRGNVLEACKRFKHL 431 (433)
Q Consensus 373 ~~~~~---~~~~~~~~~~l~~~~gi~v~~g~~f~--~~~~~~iRi~~~~~~~~l~~~l~~l~~~ 431 (433)
|++++ +.++.++...+++++||.+.||+.|+ +.+.+++||+++.+++++++++++|+++
T Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~~~~~~l~~~~~rl~~~ 386 (386)
T PRK09082 323 LVDYSAISDLDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFAKQEETLDAAAERLCQL 386 (386)
T ss_pred EEeccccCCCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEecCCHHHHHHHHHHHhhC
Confidence 99987 34577788888888899999999885 3356899999988999999999999864
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=400.13 Aligned_cols=349 Identities=22% Similarity=0.356 Sum_probs=279.1
Q ss_pred CCCceEEecCCCCC----------------CCC-------------hHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHH
Q 045431 61 PDAEVISLGIGDTT----------------EPI-------------PEVITSALAKRSYALSTQEGYSGYGAEQGEKPLR 111 (433)
Q Consensus 61 ~~~~~i~l~~g~~~----------------~~~-------------~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr 111 (433)
++.++|+|+.|+|+ +.. |..+++++.+.+.... .....|++..|.++||
T Consensus 44 ~~~~vi~~~~G~p~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~~~P~~~~~~~~~~~~~~~--~~~~~Y~~~~G~~~LR 121 (481)
T PTZ00377 44 PFDSIVYCNIGNPQALGQKPLTFYRQVLSLVEYPFLLEDPSVSSLFPADVVARAKEYLNAIG--GGTGAYTDSAGYPFVR 121 (481)
T ss_pred CcceeEEcCCCChhhcCCCCchHHHHHHHHccChhhhcCccccccCCHHHHHHHHHHHHhCC--CcccCcCcccCCHHHH
Confidence 56789999999995 655 4477888776665432 2456799999999999
Q ss_pred HHHHHHHhc--cCCCCCCcEEEcCChHHHHHHH-HHhc-CCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEE
Q 045431 112 AAIASTFYK--DLGIEEGDIFVSDGAKCDISRL-QIVF-GSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEY 187 (433)
Q Consensus 112 ~~la~~l~~--~~~~~~~~i~~~~G~~~al~~l-~~l~-~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 187 (433)
++||+|+.+ ++.+++++|++|+|+++++.++ ..++ ++||.|++++|+|+.|...++.+| ..++.
T Consensus 122 ~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~~P~y~~y~~~~~~~g------------~~~v~ 189 (481)
T PTZ00377 122 KAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPLYSAAITLLG------------GKQVP 189 (481)
T ss_pred HHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhccCCCCEEEECCCCchhHHHHHHHcC------------CEEEE
Confidence 999999985 7778999999999999999984 6777 799999999999999999999999 47888
Q ss_pred eecCccCCcccCCCC-----C------CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC--
Q 045431 188 MRCTAENGFFPDLST-----V------ARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDD-- 254 (433)
Q Consensus 188 ~~~~~~~~~~~~~~~-----~------~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~-- 254 (433)
++.+.++++..+++. . .++++++++|||||||.++|.+++++|+++|++|+++||+||+|.++.+++
T Consensus 190 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~ 269 (481)
T PTZ00377 190 YYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEK 269 (481)
T ss_pred EEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCC
Confidence 888766566555332 1 178999999999999999999999999999999999999999999988853
Q ss_pred CCCcccc----cCCC---CcceEEEeccccc-ccccccceeeeec---cccccccCCcchhHHHHHHHhhccCCCcHHHH
Q 045431 255 NPRSIFE----IPGA---KEVAIETSSFSKY-AGFTGVRLGWTVI---PKELLFSDGFPVAKDFNRIVCTCFNGASNISQ 323 (433)
Q Consensus 255 ~~~~~~~----~~~~---~~~vi~i~S~sK~-~~~~G~r~G~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 323 (433)
...++.. ++.. ..++|+++||||+ ++++|||+||+++ +++++ +.+.+... ...+++.++|
T Consensus 270 ~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~li--------~~l~~~~~-~~~~~~~~~Q 340 (481)
T PTZ00377 270 PFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVR--------EQIYKLAS-INLCSNVVGQ 340 (481)
T ss_pred CcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHHHH--------HHHHHHhh-eecCCChHHH
Confidence 2334332 2211 1368999999997 5889999999986 77764 66666553 3445889999
Q ss_pred HHHHHhcCcC----C----h-hHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCCccEEEEECC--CC-----------C
Q 045431 324 AGGLACLSPE----G----F-KAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAPYVWVQFP--GR-----------S 380 (433)
Q Consensus 324 ~~~~~~l~~~----~----~-~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~~~~~--~~-----------~ 380 (433)
.++..+++.. + + +++++.++.++++++.+.+.|+++ |+.+..|++|+|+|++++ .. .
T Consensus 341 ~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~~~~p~gg~fl~~~~~l~~~~~~~~~~~~~~~ 420 (481)
T PTZ00377 341 LMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVSCQPVEGAMYAFPRIELPEKAIQEAKERGLAP 420 (481)
T ss_pred HHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeecCCeeEEEEeeccCchhhHHHHHhcCCCc
Confidence 9999998631 1 1 234555557899999999999988 899988999999998764 11 1
Q ss_pred hHHHHHHHHHcCCeEecCCCCCCCC-CCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 381 SWDVFSEILEKTHVVTTPGSGFGPG-GEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 381 ~~~~~~~l~~~~gi~v~~g~~f~~~-~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+..++..+++++||.+.||+.|+.. +++++||+++.+++++++++++|++++
T Consensus 421 ~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~~~~e~l~~~l~rl~~~~ 473 (481)
T PTZ00377 421 DVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITILPPEEQIEEMVKKIKEFH 473 (481)
T ss_pred HHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEEEECCCHHHHHHHHHHHHHHH
Confidence 3445677888889999999999753 457999999877889999999999876
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-50 Score=401.80 Aligned_cols=347 Identities=21% Similarity=0.337 Sum_probs=280.4
Q ss_pred CCCceEEecCCCC---CCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCCh
Q 045431 61 PDAEVISLGIGDT---TEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGA 135 (433)
Q Consensus 61 ~~~~~i~l~~g~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~ 135 (433)
.+.++|+|+.|+| ++++|+.+.+++.+++.. ...|++..|.++||++||+|+.+ +.++++++|++|+|+
T Consensus 144 ~g~~~i~l~~G~p~~~~~~~p~~~~~~~~~~~~~------~~~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~ 217 (517)
T PRK13355 144 AGTHILKLNIGNPAPFGFRTPDEVVYDMAQQLTD------TEGYSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGV 217 (517)
T ss_pred cCCCeEEecCcCCCcCCCCCCHHHHHHHHHHhhc------CCCCCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcH
Confidence 4567999999998 466799999999887742 34799999999999999999975 335789999999999
Q ss_pred HHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEE
Q 045431 136 KCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDII 209 (433)
Q Consensus 136 ~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i 209 (433)
++++.+ +..++++||+|++++|+|+.|...++.+| .+++.++.+.+++|..+++. .+++++|
T Consensus 218 ~eal~~~~~~l~~~Gd~Vli~~P~y~~y~~~~~~~g------------~~~v~~~~~~~~~~~~d~~~l~~~~~~~~k~i 285 (517)
T PRK13355 218 SELINLSMSALLDDGDEVLIPSPDYPLWTACVNLAG------------GTAVHYRCDEQSEWYPDIDDIRSKITSRTKAI 285 (517)
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCCCcCHHHHHHHCC------------CEEEEeecCcccCCCCCHHHHHHhcCcCceEE
Confidence 999987 57788999999999999999999999998 47888888766666655432 3688999
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccceee
Q 045431 210 FFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGW 288 (433)
Q Consensus 210 ~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~ 288 (433)
+++|||||||.+++.+++++|+++|++|+++||+||+|.++.+++. ..++.++.. ...+++++||||+++++|+|+||
T Consensus 286 ~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~-~~~vi~~~S~SK~~~~~G~RiG~ 364 (517)
T PRK13355 286 VIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAP-DLFCVTFSGLSKSHMIAGYRIGW 364 (517)
T ss_pred EEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCC-CCeEEEEecchhhccCcccceEE
Confidence 9999999999999999999999999999999999999999988763 456666532 23578889999999999999999
Q ss_pred eecc--ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCC--hhHHHHHHHHHHHHHHHHHHHHhhc-CCee
Q 045431 289 TVIP--KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEG--FKAVHEVIGFYKENTDIIVETFNSL-GFKV 363 (433)
Q Consensus 289 l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~ 363 (433)
++++ ++++ ..+.+.+... .....+.+.++|.++.++|.... .+++.+.+ ++.++++.+.+.|+++ |+.+
T Consensus 365 ~i~~~~~~~~----~~~~~~l~~~-~~~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~-~~~~~r~~l~~~L~~~~g~~~ 438 (517)
T PRK13355 365 MILSGNKRIA----KDYIEGLNML-ANMRLCSNVPAQSIVQTALGGHQSVKDYLVPGG-RVYEQRELVYNALNAIPGISA 438 (517)
T ss_pred EEeeCchhhH----HHHHHHHHHH-hcCcCCcChHHHHHHHHHhcCCccHHHHHHHHH-HHHHHHHHHHHHHhcCCCccc
Confidence 9965 3332 0011223222 22334578899999999996432 24555543 4456689999999988 8999
Q ss_pred ecCCCccEEEEECCC-----CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 364 YGGKNAPYVWVQFPG-----RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 364 ~~~~~g~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
..|.+++|+|++++. .++.+++..+++++||.+.||..|+..++++|||+++.+++++++++++|++++
T Consensus 439 ~~p~g~fy~~~~l~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~~~~~~~l~~a~~rl~~~~ 512 (517)
T PRK13355 439 VKPKAAFYIFPKIDVKKFNIHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVYLPRLEDLEDAMDRLADFF 512 (517)
T ss_pred CCCCeeeEEEeecCcccCCCCCHHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 999999999999873 245677778888889999999999866788999999889999999999999876
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-50 Score=387.42 Aligned_cols=345 Identities=26% Similarity=0.422 Sum_probs=289.6
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHHHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDIS 140 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~al~ 140 (433)
+++|+|+.|+|++++|+.+.+++.+.+.. ....|++..|.++||+++++++++ +..+++++|++|+|+++++.
T Consensus 24 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~-----~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~ 98 (382)
T PRK06108 24 EGVLPLWFGESDLPTPDFIRDAAAAALAD-----GETFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALM 98 (382)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHhc-----CCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHH
Confidence 36899999999999999999999888763 234698889999999999999986 55588999999999999998
Q ss_pred H-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCcc-CCcccCCCC-----CCCccEEEEcC
Q 045431 141 R-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAE-NGFFPDLST-----VARTDIIFFCS 213 (433)
Q Consensus 141 ~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~i~l~~ 213 (433)
+ +..++++||.|++++|+|+.+...++.+| .+++.++.+.+ .++..+++. .++++++++++
T Consensus 99 ~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~ 166 (382)
T PRK06108 99 LAAQALVGPGDEVVAVTPLWPNLVAAPKILG------------ARVVCVPLDFGGGGWTLDLDRLLAAITPRTRALFINS 166 (382)
T ss_pred HHHHHhcCCCCEEEEeCCCccchHHHHHHCC------------CEEEEeeCCCCCCCccCCHHHHHHhcCccceEEEEEC
Confidence 7 57778999999999999999999888888 47888888643 233333322 25788999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccC-CC-CCcccccCCCCcceEEEecccccccccccceeeeec
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISD-DN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVI 291 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~-~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~ 291 (433)
||||||.+++.+++++|+++|+++|++||+||+|.++.++ +. ..++..+....+++++++||||.+|++|+|+||+++
T Consensus 167 p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~ 246 (382)
T PRK06108 167 PNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVA 246 (382)
T ss_pred CCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcccceeeeeC
Confidence 9999999999999999999999999999999999998876 22 233444433346899999999999999999999999
Q ss_pred cccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCCcc
Q 045431 292 PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAP 370 (433)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~ 370 (433)
+++++ +.+.+.......+++.+.|.++..++.+. ..++++++++++++++.+.+.|+++ |+.+..|.+|+
T Consensus 247 ~~~~~--------~~~~~~~~~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~g~ 317 (382)
T PRK06108 247 PPALG--------QVLEKLIEYNTSCVAQFVQRAAVAALDEG-EDFVAELVARLRRSRDHLVDALRALPGVEVAKPDGAM 317 (382)
T ss_pred CHHHH--------HHHHHHHHhcccCCChHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeE
Confidence 98885 56665555455668899999999999743 5678899999999999999999887 88888888999
Q ss_pred EEEEECCC-CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 371 YVWVQFPG-RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 371 ~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
|+|++++. .+..++...+++++||.+.||..|++.+++++||++..+++++++++++|+++++
T Consensus 318 ~~~~~l~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~~l~ 381 (382)
T PRK06108 318 YAFFRIPGVTDSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFARDPARLDEAVERLRRFLA 381 (382)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 99999984 3566788888887899999999997666789999987799999999999998764
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-50 Score=389.06 Aligned_cols=343 Identities=24% Similarity=0.381 Sum_probs=288.2
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDI 139 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~al 139 (433)
+.++|+|+.|.|++++++.+.+++.+.+.. ...+|+++.|.++||+++++++++ +..+++++|++|+|+++++
T Consensus 32 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~-----~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 106 (402)
T PRK06107 32 GRSIVDLTVGEPDFDTPDHIKQAAVAAIER-----GETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAI 106 (402)
T ss_pred cCCEEEcCCCCCCCCCCHHHHHHHHHHHHc-----CCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHH
Confidence 457899999999988888899998888753 235799999999999999999975 5566889999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCC---C--CCCccEEEEcC
Q 045431 140 SR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS---T--VARTDIIFFCS 213 (433)
Q Consensus 140 ~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~i~l~~ 213 (433)
.+ +..++++||.|++++|+|+.|...+...+ ..++.++.+.++++..+++ + .+++++++++|
T Consensus 107 ~~~~~~~~~~gd~vl~~~p~y~~y~~~~~~~~------------~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~ 174 (402)
T PRK06107 107 FLALMATLEAGDEVIIPAPYWVSYPDMVLAND------------GTPVIVACPEEQGFKLTPEALEAAITPRTRWLILNA 174 (402)
T ss_pred HHHHHHhcCCCCEEEEecCCCcCHHHHHHHcC------------CEEEEecCCcccCCCCCHHHHHhhcCcCceEEEEEC
Confidence 97 56778999999999999999988877776 3566666654445444332 2 25788999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHc-CCEEEEeccccccccCCC-CCcccccC-CCCcceEEEecccccccccccceeeee
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDN-GSIIVYDSAYALYISDDN-PRSIFEIP-GAKEVAIETSSFSKYAGFTGVRLGWTV 290 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~-~~~li~De~~~~~~~~~~-~~~~~~~~-~~~~~vi~i~S~sK~~~~~G~r~G~l~ 290 (433)
||||||.++|.+++++|+++|++| +++||+||+|+++.+++. ..++.++. +..+++++++||||.+++||+|+||++
T Consensus 175 p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~~ 254 (402)
T PRK06107 175 PSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYAA 254 (402)
T ss_pred CCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcccceeeee
Confidence 999999999999999999999998 999999999999877653 34455542 234689999999999999999999999
Q ss_pred ccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCCc
Q 045431 291 IPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNA 369 (433)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g 369 (433)
++++++ +.+.........+++.++|.++..+|+. +..++++.++.++++++.+.+.|+++ |+.+..|++|
T Consensus 255 ~~~~~~--------~~~~~~~~~~~~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~p~gg 325 (402)
T PRK06107 255 GPADLI--------AAINKLQSQSSSCPSSISQAAAAAALNG-DQSFVTESVAVYKQRRDYALALLNAIPGLSCLVPDGA 325 (402)
T ss_pred cCHHHH--------HHHHHHHHhcccCCChHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcc
Confidence 999885 6777777666677899999999999974 35688999999999999999999987 8888888999
Q ss_pred cEEEEECCC------------CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 370 PYVWVQFPG------------RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 370 ~~~~~~~~~------------~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+|+|++++. .++.++...+++++||.+.||..|+. .+++||+++.+.+++++++++|++++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~--~~~iRis~~~~~e~l~~~l~~l~~~l 398 (402)
T PRK06107 326 FYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGL--SPYFRLSIATSLETLEEACARIERAV 398 (402)
T ss_pred eEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCC--CCeEEEEeCCCHHHHHHHHHHHHHHH
Confidence 999999742 14567787888888999999999964 57999999989999999999999876
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=388.54 Aligned_cols=337 Identities=21% Similarity=0.292 Sum_probs=287.5
Q ss_pred CCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHH
Q 045431 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDIS 140 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~ 140 (433)
.+.++++|+.|+|+++.|+.+ +++.+++. ....+|++..|.++||+++|+++. ++++++|++|+|+++++.
T Consensus 24 ~~~~~~~~~~~e~~~~~~~~~-~~~~~~~~-----~~~~~Y~~~~G~~~lr~~ia~~~~---~~~~~~vi~t~G~~~al~ 94 (373)
T PRK07324 24 AESCIDSLTLEELLALAGKNP-EAFYQELG-----QKKLTYGWIEGSPEFKEAVASLYQ---NVKPENILQTNGATGANF 94 (373)
T ss_pred ccCCCCCCcHHHHHhccCcch-HHHHHHHh-----cCCccCCCCCCCHHHHHHHHHHhc---CCChhhEEEcCChHHHHH
Confidence 356799999999998888888 88888875 334589999999999999999973 368899999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEEcCC
Q 045431 141 R-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFFCSP 214 (433)
Q Consensus 141 ~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~~p 214 (433)
+ +..++++||+|+++.|+|+.+...++..| .+++.++.+.++++..+++. .++++++++++|
T Consensus 95 ~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g------------~~v~~v~~~~~~~~~~d~~~l~~~~~~~~kli~i~~p 162 (373)
T PRK07324 95 LVLYALVEPGDHVISVYPTYQQLYDIPESLG------------AEVDYWQLKEENGWLPDLDELRRLVRPNTKLICINNA 162 (373)
T ss_pred HHHHHhCCCCCEEEEcCCCchhHHHHHHHcC------------CEEEEEecccccCCCCCHHHHHHhCCCCCcEEEEeCC
Confidence 7 57889999999999999999999999888 48888988766565554332 367899999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecccc
Q 045431 215 NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKE 294 (433)
Q Consensus 215 ~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~ 294 (433)
|||||.+++.+++++|+++|++||++||+||+|.++.+++...++.+. .+++|+++||||.+|++|+|+||++++++
T Consensus 163 ~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~~~~---~~~~I~~~s~SK~~~~~G~RiG~i~~~~~ 239 (373)
T PRK07324 163 NNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIADL---YEKGISTNSMSKTYSLPGIRVGWIAANEE 239 (373)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCChhhc---cCCEEEEecchhhcCCccceeEEEecCHH
Confidence 999999999999999999999999999999999998776544444433 45789999999999999999999999888
Q ss_pred ccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCCccEEE
Q 045431 295 LLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAPYVW 373 (433)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~ 373 (433)
++ +.+.+.......+++.++|.++..+++. ...++++.++.++++++.+.+.|++. ++.+..|.+|+++|
T Consensus 240 li--------~~~~~~~~~~~~~~~~~~q~~a~~~l~~-~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~gg~~~~ 310 (373)
T PRK07324 240 VI--------DILRKYRDYTMICAGVFDDMLASLALEH-RDAILERNRKIVRTNLAILDEWVAKEPRVSYVKPKAVSTSF 310 (373)
T ss_pred HH--------HHHHHHhCcEEecCChHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHhcCCCceEECCCceEEEE
Confidence 75 6777777666666788999988888863 34678899999999999999999887 78888888999999
Q ss_pred EECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 374 VQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 374 ~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+.++ +.++.++..++++++||.+.||+.|+. ++++||+++.+++.+++++++|++++
T Consensus 311 i~~~~~~~~~~~~~~ll~~~gv~v~pg~~F~~--~~~iRis~~~~~~~l~~~l~rl~~~l 368 (373)
T PRK07324 311 VKLDVDMPSEDFCLKLLKETGVLLVPGNRFDL--EGHVRIGYCCDTETLKKGLKKLSEFL 368 (373)
T ss_pred EEeCCCCCHHHHHHHHHHhcCEEEECccccCC--CCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 9887 456778888888888999999999964 57999999888999999999999876
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-50 Score=388.39 Aligned_cols=344 Identities=29% Similarity=0.471 Sum_probs=290.5
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHHHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDIS 140 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~al~ 140 (433)
+++|+|+.|+|++++++.+.+++.+.+. .....|++..|.++||+++|+++.+ +.++++++|++|+|+++++.
T Consensus 33 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~ 107 (391)
T PRK08361 33 ENVISLGIGEPDFDTPKNIKEAAKRALD-----EGWTHYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATY 107 (391)
T ss_pred cCeEEcCCCCCCCCCCHHHHHHHHHHHh-----cCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHH
Confidence 3589999999998888888888888765 2345798889999999999999975 66788999999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEEcCC
Q 045431 141 R-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFFCSP 214 (433)
Q Consensus 141 ~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~~p 214 (433)
+ +..++++||+|++++|+|+.+...+...| .+++.++++.++++..+++. .+++++++++||
T Consensus 108 ~~~~~l~~~g~~Vlv~~p~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~i~~p 175 (391)
T PRK08361 108 LAFESLLEEGDEVIIPDPAFVCYVEDAKIAE------------AKPIRIPLREENEFQPDPDELLELITKRTRMIVINYP 175 (391)
T ss_pred HHHHHhcCCCCEEEEcCCCCcccHHHHHHcC------------CEEEEEecCCccCCCCCHHHHHHhcccccEEEEEeCC
Confidence 7 57788999999999999999998888888 47888888765544444332 257889999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccceeeeeccc
Q 045431 215 NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPK 293 (433)
Q Consensus 215 ~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~ 293 (433)
|||||.++|.+++++|+++|++++++||+||+|+++.+++. ..++...+ .+++++++||||++|++|+|+||+++++
T Consensus 176 ~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~--~~~~i~~~s~SK~~~~~GlRiG~~~~~~ 253 (391)
T PRK08361 176 NNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYA--PDNTILANSFSKTFAMTGWRLGFVIAPE 253 (391)
T ss_pred CCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcC--CCCEEEEecCchhcCCcHhhhhhhccCH
Confidence 99999999999999999999999999999999999877543 34444442 4678999999999999999999999998
Q ss_pred cccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-hHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCCccE
Q 045431 294 ELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-KAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAPY 371 (433)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~ 371 (433)
+++ +.+.........+++.+.|.++..++++... .++++.++.++++++.+.+.|+++ |+.+..|.+|+|
T Consensus 254 ~~~--------~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~g~~~ 325 (391)
T PRK08361 254 QVI--------KDMIKLHAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEMPHIKVFEPKGAFY 325 (391)
T ss_pred HHH--------HHHHHHHhhhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCCEEEE
Confidence 875 5555555444556788999999999986543 578999999999999999999987 888888888999
Q ss_pred EEEECCC--CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 372 VWVQFPG--RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 372 ~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
+|++++. .++.++...+++++||.+.||..|+..+.++|||++..+++++++++++|+++++
T Consensus 326 ~~~~l~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~~l~ 389 (391)
T PRK08361 326 VFANIDETGMSSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYATSKEKLIEAMERMEKALE 389 (391)
T ss_pred EEEECCCCCCCHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 9999973 5677888888777899999999998666789999998888999999999998763
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-50 Score=389.95 Aligned_cols=349 Identities=19% Similarity=0.317 Sum_probs=283.8
Q ss_pred CCCCceEEecCCCCC----CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--------cCCCCCC
Q 045431 60 YPDAEVISLGIGDTT----EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--------DLGIEEG 127 (433)
Q Consensus 60 ~~~~~~i~l~~g~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--------~~~~~~~ 127 (433)
..+.++|+|+.|.|+ +.+|+.+.+++.+.+.. .....|+++.|.++||+++|+|+.+ +..++++
T Consensus 30 ~~~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~----~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~ 105 (412)
T PTZ00433 30 PSPKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDS----QECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKD 105 (412)
T ss_pred CCCCCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhc----CCCCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCChh
Confidence 356689999999986 45788888988887763 3456898889999999999999975 3457899
Q ss_pred cEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC----
Q 045431 128 DIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST---- 202 (433)
Q Consensus 128 ~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 202 (433)
+|++|+|+++++.+ +..++++||+|++++|+|+.+...++..| .+++.++.+.+.++..+++.
T Consensus 106 ~i~it~G~~~al~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g------------~~~~~i~~~~~~~~~~d~~~l~~~ 173 (412)
T PTZ00433 106 NVVLCSGVSHAILMALTALCDEGDNILVPAPGFPHYETVCKAYG------------IEMRFYNCRPEKDWEADLDEIRRL 173 (412)
T ss_pred hEEEeCChHHHHHHHHHHhcCCCCEEEEccCCcccHHHHHHHcC------------CEEEEEecCccccCcCCHHHHHHH
Confidence 99999999999997 57778999999999999999999999999 47888887654444333321
Q ss_pred -CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEeccccccc
Q 045431 203 -VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAG 280 (433)
Q Consensus 203 -~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~ 280 (433)
..++++|+++|||||||.+++.+++++|+++|++||++||+||+|.++.+++. ..++.+++. ..++|+++||||++|
T Consensus 174 ~~~~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~SfSK~~~ 252 (412)
T PTZ00433 174 VDDRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDT-TVPRVILGGTAKNLV 252 (412)
T ss_pred hccCceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccC-CCceEEEccchhhcC
Confidence 24789999999999999999999999999999999999999999999887653 345555543 235799999999999
Q ss_pred ccccceeeeec--cccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhh
Q 045431 281 FTGVRLGWTVI--PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNS 358 (433)
Q Consensus 281 ~~G~r~G~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 358 (433)
+||+|+||+++ ++... +.+.+.+.+... ...+++.++|.++.+++.+....++++.++.++++++.+.+.|++
T Consensus 253 ~pGlRlG~~i~~~p~~~~----~~~~~~~~~~~~-~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 327 (412)
T PTZ00433 253 VPGWRLGWLLLVDPHGNG----GDFLDGMKRLGM-LVCGPCSVVQAALGEALLNTPQEHLEQIVAKLEEGAMVLYNHIGE 327 (412)
T ss_pred CCCeeEEEEEEeCCcccH----HHHHHHHHHHhh-ccCCCChHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999997 22110 001244444332 234689999999999987644578999999999999999999998
Q ss_pred c-CCeeecCCCccEEEEECCC------CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHh
Q 045431 359 L-GFKVYGGKNAPYVWVQFPG------RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHL 431 (433)
Q Consensus 359 ~-g~~~~~~~~g~~~~~~~~~------~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~ 431 (433)
+ |+.+..|++|+|+|++++. .++.+++..+++++||.+.||+.|+. ++++||++..+++++++++++|+++
T Consensus 328 ~~~~~~~~p~gg~f~~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~l~~al~~l~~~ 405 (412)
T PTZ00433 328 CIGLSPTMPRGSMFLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFHM--PGFTRLTISRPVEVLREAVERIKAF 405 (412)
T ss_pred CCCCcccCCCeeEEEEEEechhhcCCCCCHHHHHHHHHHhcCEEEeCccccCC--CCeEEEEecCCHHHHHHHHHHHHHH
Confidence 6 7888888899999999873 14567888888777999999999864 5799999988889999999999987
Q ss_pred h
Q 045431 432 Y 432 (433)
Q Consensus 432 l 432 (433)
+
T Consensus 406 ~ 406 (412)
T PTZ00433 406 C 406 (412)
T ss_pred H
Confidence 6
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-50 Score=380.55 Aligned_cols=335 Identities=27% Similarity=0.462 Sum_probs=279.8
Q ss_pred eEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCC-cEEEcCChHHHHHH
Q 045431 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEG-DIFVSDGAKCDISR 141 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~-~i~~~~G~~~al~~ 141 (433)
+++|+.|.|++++++.+.+++.+... ....|+++.|.++||+++++|+.+ ++.++++ +|++|+|+++++.+
T Consensus 2 ~~~~~~g~p~~~~~~~~~~~~~~~~~------~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~ 75 (350)
T TIGR03537 2 LFDFGTGDPKEPTPPFIRKALIDAVP------EVSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFH 75 (350)
T ss_pred eEeccCCCCCCCCCHHHHHHHHHHHh------ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHH
Confidence 68999999998888899888888753 345798889999999999999975 6778887 99999999999997
Q ss_pred -HHHhcCCC---CEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEEc
Q 045431 142 -LQIVFGSN---VTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFFC 212 (433)
Q Consensus 142 -l~~l~~~g---d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~ 212 (433)
+..++++| |.|++++|+|+.+...++..| .+++.++.+.++++..+++. .+++++++++
T Consensus 76 ~~~~~~~~g~~~d~Vl~~~p~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~ 143 (350)
T TIGR03537 76 FPLVFIDPEEDRRRVIFGTPGYPVYERGALFAG------------GEPTAVKLKKEDGFLLRLEKVEKSILEETKIVWIN 143 (350)
T ss_pred HHHHHcCCCCCCceEEEcCCCCcchHHHHHhcC------------CEEEEcccCcccCCccCHHHHHHhhhhccEEEEEe
Confidence 46778887 699999999999999999999 58888888755555334321 2578999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecc
Q 045431 213 SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIP 292 (433)
Q Consensus 213 ~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~ 292 (433)
+||||||.+++.+++++|+++|++||++||+||+|+++.+++.+.++...+ .+++|+++||||.+|++|+|+||++++
T Consensus 144 ~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~--~~~~i~~~s~SK~~g~~GlRiG~~~~~ 221 (350)
T TIGR03537 144 YPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPPHSALEVG--IENVLAFHSLSKRSGMTGYRSGFVAGD 221 (350)
T ss_pred CCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCchhhcC--cCCEEEEeecccccCCccccceeeecC
Confidence 999999999999999999999999999999999999877665444454442 468999999999999999999999998
Q ss_pred ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEE
Q 045431 293 KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYV 372 (433)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~ 372 (433)
+.++ +.+...........+.++|.++.+++.. ..++++.++.++++++.+.+.|++.|+.+..|.+|+|+
T Consensus 222 ~~~~--------~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~r~~l~~~~~~~~~~l~~~g~~~~~~~g~~~~ 291 (350)
T TIGR03537 222 EKLI--------SFLRKLRANFGVASPDFVQAAAKAAWSD--DNHVLERRKIFKRKRDLFIEFFNKVGLEYLYPDATFYL 291 (350)
T ss_pred HHHH--------HHHHHHHHhhccCCCHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCeEEEE
Confidence 8774 6666655555555666788887777763 35678889999999999999999999888888889999
Q ss_pred EEECCC-CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHH
Q 045431 373 WVQFPG-RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKH 430 (433)
Q Consensus 373 ~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~ 430 (433)
|++++. .++.++.+.+++ +||.+.||..|+...++++||+++.+++++++++++|++
T Consensus 292 ~~~~~~~~~~~~l~~~L~~-~gv~v~~g~~f~~~~~~~~Ri~~~~~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 292 WVKVPSGIDAKDYALRLLE-NGIVVAPGENFGSGEEGYVRVALVPTLEECEEALRLWER 349 (350)
T ss_pred EEECCCCCCHHHHHHHHHH-CCEEEcCchhhCCCCCCEEEEEecCCHHHHHHHHHHHhc
Confidence 999984 356777777765 599999999997666789999987788999999999976
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=384.31 Aligned_cols=341 Identities=25% Similarity=0.382 Sum_probs=283.5
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCC-CCcEEEcCChHHHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIE-EGDIFVSDGAKCDI 139 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~-~~~i~~~~G~~~al 139 (433)
+++|+|+.|.|++.+|+.+.+++.+.+.. ....|.+..|.++||+++++|+.+ ++.++ +++|++|+|+++++
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al 104 (391)
T PRK07309 30 PGILKLTLGEPDFTTPDHVKEAAKRAIDA-----NQSHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEAL 104 (391)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHHhc-----CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHH
Confidence 46999999999988888888888887752 235698899999999999999975 55555 47999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCC---C-----CCCccEEE
Q 045431 140 SR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS---T-----VARTDIIF 210 (433)
Q Consensus 140 ~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~i~ 210 (433)
.+ +..++++||+|++++|+|+++...++..| .+++.++.+.+ ++..+.+ + .+++++++
T Consensus 105 ~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g------------~~~~~~~~~~~-~~~~d~~~l~~~~~~~~~~~~~i~ 171 (391)
T PRK07309 105 SASLTAILEPGDKVLLPAPAYPGYEPIVNLVG------------AEIVEIDTTEN-DFVLTPEMLEKAILEQGDKLKAVI 171 (391)
T ss_pred HHHHHHhcCCCCEEEEeCCCCcchHHHHHHcC------------CEEEEEecCCc-CCcCCHHHHHHHhhccCCCeEEEE
Confidence 97 57788999999999999999999999888 47777877542 2322221 1 13689999
Q ss_pred EcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccceeee
Q 045431 211 FCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWT 289 (433)
Q Consensus 211 l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l 289 (433)
+++||||||.+++.+++++|+++|++|++++|+||+|.++.+++. +.++.++. .+++|+++||||.+|++|+|+||+
T Consensus 172 l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~~g~~GlRvG~~ 249 (391)
T PRK07309 172 LNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYL--PDQTILINGLSKSHAMTGWRIGLI 249 (391)
T ss_pred EECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhc--cCCEEEEecChhhccCccceeEEE
Confidence 999999999999999999999999999999999999999888653 34555542 468999999999999999999999
Q ss_pred eccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCc
Q 045431 290 VIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNA 369 (433)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g 369 (433)
+++++++ +.+.........+++.++|.++.+++++. ..+....++.++++++.+.+.|+++|+.+..|.+|
T Consensus 250 v~~~~~~--------~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~gg 320 (391)
T PRK07309 250 FAPAEFT--------AQLIKSHQYLVTAATTMAQFAAVEALTNG-KDDALPMKKEYIKRRDYIIEKMTDLGFKIIKPDGA 320 (391)
T ss_pred EeCHHHH--------HHHHHHHhhcccCCChHHHHHHHHHHhCC-hhHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCee
Confidence 9999885 56665544445567899999999998753 33346778899999999999999999988888899
Q ss_pred cEEEEECCCC---ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 370 PYVWVQFPGR---SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 370 ~~~~~~~~~~---~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+|+|++++.. ++.++...+++++||.+.||..|+..++++|||++..+.+++++++++|++++
T Consensus 321 ~~~~~~l~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~i~~l~~~~ 386 (391)
T PRK07309 321 FYIFAKIPAGYNQDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYAASMETIKEAMKRLKEYM 386 (391)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHH
Confidence 9999999842 45677777777789999999999877788999999888899999999999876
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-50 Score=394.78 Aligned_cols=348 Identities=17% Similarity=0.262 Sum_probs=274.4
Q ss_pred ceEEecCCCCCC--CC-hHHHHHHHHHHHhh---cccCCCCCCCCCCCCCHHHHHHHHHHHhc--c--CCCCCCcEEEcC
Q 045431 64 EVISLGIGDTTE--PI-PEVITSALAKRSYA---LSTQEGYSGYGAEQGEKPLRAAIASTFYK--D--LGIEEGDIFVSD 133 (433)
Q Consensus 64 ~~i~l~~g~~~~--~~-~~~~~~a~~~~~~~---~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~--~~~~~~~i~~~~ 133 (433)
.+|+|+.+++.+ +. ++.+.+.....+.. .........|++..|.++||++||+|+.+ + +.+++++|++|+
T Consensus 47 g~i~l~~aEN~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~ 126 (496)
T PLN02376 47 GIIQMGLAENQLCLDLIKDWVKENPEASICTLEGIHQFSDIANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPERVVMSG 126 (496)
T ss_pred ceEEeecchhhhhHHHHHHHHHhCchhhccccccccccchhhccCCCCCcHHHHHHHHHHHHHHhCCCCcCChhhEEEcc
Confidence 689999999864 22 33444333321111 11113445788899999999999999985 4 447899999999
Q ss_pred ChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHH-HhCCcccccccccccceEEEeecCccCCcccCCCC---------
Q 045431 134 GAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSV-IMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST--------- 202 (433)
Q Consensus 134 G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 202 (433)
|+++++.+ +..+++|||.|++++|+|+.+...+. ..| .+++.++++.++++..+++.
T Consensus 127 Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~~~~~~~~~G------------~~vv~v~~~~~~~~~~~~~~le~a~~~a~ 194 (496)
T PLN02376 127 GATGANETIMFCLADPGDVFLIPSPYYAAFDRDLRWRTG------------VEIIPVPCSSSDNFKLTVDAADWAYKKAQ 194 (496)
T ss_pred chHHHHHHHHHHhCCCCCEEEECCCCccchHHHHHhhCC------------CEEEEEeCCCCccCcCCHHHHHHHHHHHH
Confidence 99999997 58889999999999999999998776 467 47888888654444333221
Q ss_pred --CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCC-------CCcceEEE
Q 045431 203 --VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPG-------AKEVAIET 272 (433)
Q Consensus 203 --~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~-------~~~~vi~i 272 (433)
..++|+|+++|||||||.++|.+++++|+++|++|+++||+||+|+++.+++. +.++.++.. ..++++++
T Consensus 195 ~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv 274 (496)
T PLN02376 195 ESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIV 274 (496)
T ss_pred hcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEE
Confidence 24789999999999999999999999999999999999999999999887753 556555421 12467889
Q ss_pred ecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh--hHHHHHHHHHHHHHH
Q 045431 273 SSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF--KAVHEVIGFYKENTD 350 (433)
Q Consensus 273 ~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~~~ 350 (433)
+||||.||+||+|+||++++++.+ .+.+.... ....++.+.|.++.+++.+..+ +++.+.++.++++++
T Consensus 275 ~S~SK~~glpGlRvG~li~~~~~l-------~~~~~~~~--~~~~vs~~~Q~a~~~~L~d~~~~~~~l~~~r~~l~~r~~ 345 (496)
T PLN02376 275 YSLSKDMGLPGFRVGIVYSFNDSV-------VSCARKMS--SFGLVSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHK 345 (496)
T ss_pred EeccccCCCCcceEEEEEECCHHH-------HHHHHHHh--hcCCCCHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999975554 23333222 2334789999999999987654 568888999999999
Q ss_pred HHHHHHhhcCCeeecCCCccEEEEECCCC-C-------hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc-ChhHH
Q 045431 351 IIVETFNSLGFKVYGGKNAPYVWVQFPGR-S-------SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG-HRGNV 421 (433)
Q Consensus 351 ~l~~~l~~~g~~~~~~~~g~~~~~~~~~~-~-------~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~l 421 (433)
.+.+.|++.|+.+..+.+|+|+|++++.. . ..++...++++.||.+.||+.|+...+++|||+|+. +++++
T Consensus 346 ~l~~~L~~~gi~~~~~~aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~fa~~~~~~l 425 (496)
T PLN02376 346 VFTTGIKKADIACLTSNAGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFANMDDDTL 425 (496)
T ss_pred HHHHHHHHCCCcccCCCceEEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEeCccccCCCCCCEEEEEeeCCCHHHH
Confidence 99999999999988888999999999731 1 246677777778999999999987678899999975 78999
Q ss_pred HHHHHHHHHhh
Q 045431 422 LEACKRFKHLY 432 (433)
Q Consensus 422 ~~~l~~l~~~l 432 (433)
++++++|++++
T Consensus 426 ~~al~rl~~~l 436 (496)
T PLN02376 426 HVALGRIQDFV 436 (496)
T ss_pred HHHHHHHHHHH
Confidence 99999999876
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=385.50 Aligned_cols=349 Identities=21% Similarity=0.326 Sum_probs=282.4
Q ss_pred CCCceEEecCCCCC----CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc-cCCCCCCcEEEcCCh
Q 045431 61 PDAEVISLGIGDTT----EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK-DLGIEEGDIFVSDGA 135 (433)
Q Consensus 61 ~~~~~i~l~~g~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~-~~~~~~~~i~~~~G~ 135 (433)
++.++|+|+.|+|+ +++++.+.+++.+.+.. .....|++..|.++||+++++++.+ +..+++++|++|+|+
T Consensus 29 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~Y~~~~g~~~lr~aia~~~~~~~~~~~~~~i~~t~G~ 104 (401)
T TIGR01264 29 PEKPMIKLSIGDPTVFGNLPTDPEVMQAMKDSLDS----GKYNGYAPTVGALSAREAIASYYHNPDGPIEADDVVLCSGC 104 (401)
T ss_pred cCCCeeecCCCCCCCcCCCCCCHHHHHHHHHHHhc----cCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHEEECcCh
Confidence 34578999999985 67888899998887753 3346798999999999999999975 555789999999999
Q ss_pred HHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEE
Q 045431 136 KCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDII 209 (433)
Q Consensus 136 ~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i 209 (433)
++++.+ +..++++||+|++++|+|+.+...++..| ..++.++.+.++++..+++. ..+++++
T Consensus 105 ~~al~~~~~~l~~~gd~v~i~~P~y~~~~~~~~~~g------------~~v~~~~~~~~~~~~~d~~~l~~~~~~~~~~v 172 (401)
T TIGR01264 105 SHAIEMCIAALANAGQNILVPRPGFPLYETLAESMG------------IEVKLYNLLPDKSWEIDLKQLESLIDEKTAAL 172 (401)
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCCChhHHHHHHHcC------------CEEEEeecCCccCCCCCHHHHHHHhccCceEE
Confidence 999997 57788999999999999999999999898 47777777544333333321 2467899
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccceee
Q 045431 210 FFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGW 288 (433)
Q Consensus 210 ~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~ 288 (433)
+++|||||||.+++.+++++|+++|+++|++||+||+|.++.+++. ..++.+++. ..++|+++||||+|+++|+|+||
T Consensus 173 ~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~vi~~~SfSK~~~~~GlRiG~ 251 (401)
T TIGR01264 173 IVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSS-TVPILSCGGLAKRWLVPGWRLGW 251 (401)
T ss_pred EEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCC-CCcEEEEccCcccCCCccceEEE
Confidence 9999999999999999999999999999999999999999887653 445555543 23589999999999999999999
Q ss_pred eecccc--ccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeec
Q 045431 289 TVIPKE--LLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYG 365 (433)
Q Consensus 289 l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~ 365 (433)
+++++. .+ ....+.+..... ...+++.+.|.++.+++.+....++++.++.++++++.+.+.|+++ |+.+..
T Consensus 252 iv~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~~ 326 (401)
T TIGR01264 252 IIIHDRRGIL----RDIRDGLVKLSQ-RILGPCTIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAAVPGLRPVM 326 (401)
T ss_pred EEecCcchhH----HHHHHHHHHHhh-ccCCCCcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccC
Confidence 998852 11 001233333222 2345788999999999975445788999999999999999999998 777777
Q ss_pred CCCccEEEEECCC------CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 366 GKNAPYVWVQFPG------RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 366 ~~~g~~~~~~~~~------~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
|.+|+|+|++++. .++.++...+++++||.+.||+.|+. ++++||+++.+++++++++++|+++++
T Consensus 327 p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~--~~~iRis~~~~~~~l~~~l~rl~~~~~ 398 (401)
T TIGR01264 327 PSGAMYMMVGIEMEHFPEFKNDVEFTERLVAEQSVFCLPGSCFEY--PGFFRVVLTVPVVMMEEACSRIQEFCE 398 (401)
T ss_pred CCeeeEEEEEecccccCCCCCHHHHHHHHHHhCCEEEeCchhcCC--CCeEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 8899999999752 24567778887778999999999863 579999998889999999999998763
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-49 Score=381.65 Aligned_cols=346 Identities=23% Similarity=0.324 Sum_probs=284.3
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCC-CCcEEEcCChHHHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIE-EGDIFVSDGAKCDI 139 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~-~~~i~~~~G~~~al 139 (433)
++.++|+.|++++++|+.+.+++.+.+.. .....|++..|.+++|+++++++++ +..++ +++|++|+|+++++
T Consensus 27 ~~~~~l~~g~~~~~~~~~~~~a~~~~~~~----~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l 102 (389)
T PRK05957 27 PGTISLGQGVVSYPPPPEAIEALNNFLAN----PENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAF 102 (389)
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhC----CCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHH
Confidence 35799999999988999999999887753 2335798899999999999999986 44445 78999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEEEEcCCC
Q 045431 140 SR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIFFCSPN 215 (433)
Q Consensus 140 ~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~~p~ 215 (433)
.. +..++++||+|++++|+|..+...++..| .+++.++.+.+.++..+ ++. .+++++|+++|||
T Consensus 103 ~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~i~~~~klv~~~~p~ 170 (389)
T PRK05957 103 MNAILAITDPGDEIILNTPYYFNHEMAITMAG------------CQPILVPTDDNYQLQPEAIEQAITPKTRAIVTISPN 170 (389)
T ss_pred HHHHHHhcCCCCEEEEeCCCCcCHHHHHHhcC------------CEEEEeecCCCCCcCHHHHHHhcCcCceEEEEeCCC
Confidence 86 57778999999999999999888888778 47777877543232222 222 3578999999999
Q ss_pred CccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCC-CcccccCCCCcceEEEecccccccccccceeeeecccc
Q 045431 216 NPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNP-RSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKE 294 (433)
Q Consensus 216 nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~-~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~ 294 (433)
||||.++|.+++++|+++|++||++||+||+|.++.+++.+ .+...+....+++|+++||||.+|++|+|+||++++++
T Consensus 171 NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~ 250 (389)
T PRK05957 171 NPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYMVIPIH 250 (389)
T ss_pred CCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCccceeEEEecCHH
Confidence 99999999999999999999999999999999998876532 23334433346899999999999999999999999988
Q ss_pred ccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CC-eeecCCCccEE
Q 045431 295 LLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GF-KVYGGKNAPYV 372 (433)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~-~~~~~~~g~~~ 372 (433)
++ +.+.........+++.+.|.++..++++ +..++++.++.++++++.+.+.|+++ ++ .+.++.+|+|+
T Consensus 251 ~~--------~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~gg~~~ 321 (389)
T PRK05957 251 LL--------EAIKKIQDTILICPPVVSQYAALGALQV-GKSYCQQHLPEIAQVRQILLKSLGQLQDRCTLHPANGAFYC 321 (389)
T ss_pred HH--------HHHHHHHhhcccCCCcHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCeeEEE
Confidence 75 6777666555566788999998898874 33567888888999999999999987 53 66677889999
Q ss_pred EEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc-ChhHHHHHHHHHHHhhC
Q 045431 373 WVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG-HRGNVLEACKRFKHLYK 433 (433)
Q Consensus 373 ~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~l~~~l~~l~~~l~ 433 (433)
|++++ +.++.++..++++++||.+.||+.|+..+++++||+++. +.+++++++++|.+.++
T Consensus 322 ~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~l~~~~~~l~~~~~ 384 (389)
T PRK05957 322 FLKVNTDLNDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGALQKATAKEGIERLVQGLK 384 (389)
T ss_pred EEeCCCCCChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHH
Confidence 99997 567778888888777999999999976666799999964 78999999999988763
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-49 Score=383.47 Aligned_cols=344 Identities=24% Similarity=0.342 Sum_probs=281.4
Q ss_pred CCCceEEecCCCC---CCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCCh
Q 045431 61 PDAEVISLGIGDT---TEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGA 135 (433)
Q Consensus 61 ~~~~~i~l~~g~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~ 135 (433)
++.++|+|+.|.| ++++|+.+.+++.+.+.. ....|++..|.++||+++++|+.+ ++++++++|++|+|+
T Consensus 28 ~~~~~i~l~~g~p~~~~~~p~~~~~~~~~~~~~~-----~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~ 102 (398)
T PRK08363 28 KGIKVIRLNIGDPVKFDFQPPEHMKEAYCRAIKE-----GHNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAV 102 (398)
T ss_pred cCCCeEEEeCCCCCcCCCCCCHHHHHHHHHHHHc-----CCCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCH
Confidence 3457999999998 677889999999887753 235788889999999999999975 677899999999999
Q ss_pred HHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEe-ecCccCCcccCCC---C--CCCccE
Q 045431 136 KCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYM-RCTAENGFFPDLS---T--VARTDI 208 (433)
Q Consensus 136 ~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~--~~~~~~ 208 (433)
++++.+ +..++++||.|++++|+|+.+...++..|. .++.+ +.+. .++..+++ + .+++++
T Consensus 103 ~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~------------~~v~~~~~~~-~~~~~d~~~l~~~~~~~~~~ 169 (398)
T PRK08363 103 TEALQLIFGALLDPGDEILIPGPSYPPYTGLVKFYGG------------VPVEYRTIEE-EGWQPDIDDIRKKITEKTKA 169 (398)
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHcCC------------EEEEeccccc-cCCcCCHHHHHhhCCcceEE
Confidence 999997 577889999999999999999998888883 55555 3332 23333322 1 257899
Q ss_pred EEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceee
Q 045431 209 IFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGW 288 (433)
Q Consensus 209 i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~ 288 (433)
++++|||||||.+++.+++++|+++|+++|++||+||+|.++.+++.+.++.+++. .+++++++||||++++||+|+||
T Consensus 170 v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~-~~~vi~~~SfSK~~~~~GlRiG~ 248 (398)
T PRK08363 170 IAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTK-DVPVIVMNGLSKVYFATGWRLGY 248 (398)
T ss_pred EEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCc-CCcEEEEecchhccCCccceEEE
Confidence 99999999999999999999999999999999999999999887665555556653 45799999999998899999999
Q ss_pred eec--cccccccCCcchhHHHHHHHh---hccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCe
Q 045431 289 TVI--PKELLFSDGFPVAKDFNRIVC---TCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFK 362 (433)
Q Consensus 289 l~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~ 362 (433)
+++ +++++ +.+..... ....+++.++|.++.++|.+ ..+++++.++.++++++.+.+.|+++ ++.
T Consensus 249 ~~~~~~~~~~--------~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~-~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~ 319 (398)
T PRK08363 249 IYFVDPEGKL--------AEVREAIDKLARIRLCPNTPAQFAAIAGLTG-PMDYLEEYMKKLKERRDYIYKRLNEIPGIS 319 (398)
T ss_pred EEEeCcHHHH--------HHHHHHHHHHhcccccCChHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 997 55553 33332221 12245789999999988874 35788999999999999999999987 788
Q ss_pred eecCCCccEEEEECCC---CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 363 VYGGKNAPYVWVQFPG---RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 363 ~~~~~~g~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+..|.+|+|+|+++++ .++.+++..+++++||.+.||..|+..+++++||+++.+++++++++++|++++
T Consensus 320 ~~~p~g~~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~~ 392 (398)
T PRK08363 320 TTKPQGAFYIFPRIEEGPWKDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFLPPVEILEEAMDRFEEFM 392 (398)
T ss_pred ecCCCeEEEEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 8788899999999874 245667777777889999999999766678999999888899999999999875
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=386.60 Aligned_cols=348 Identities=21% Similarity=0.296 Sum_probs=276.7
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhc-------ccCCCCCCCCCCCCCHHHHHHHHHHHhc--c--CCCCCCcEEE
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYAL-------STQEGYSGYGAEQGEKPLRAAIASTFYK--D--LGIEEGDIFV 131 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~--~~~~~~~i~~ 131 (433)
..+|+|+++++.+ ....+.+.+.+..... ........|.+..|.++||+++|+|+++ + ..+++++|++
T Consensus 47 ~g~i~l~~aeN~l-~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivi 125 (447)
T PLN02607 47 SGVIQMGLAENQV-SFDLLEEYLKQHPEASSWGGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGKARFDPDRIVL 125 (447)
T ss_pred CceEEEechhhhh-hHHHHHHHHHhCchhhccccccccccchhhccCCCcchHHHHHHHHHHHHHhcCCCCCcCHHHeEE
Confidence 3599999999853 5556666665543210 0112345688889999999999999985 2 3478999999
Q ss_pred cCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHH-hCCcccccccccccceEEEeecCccCCcccCCCC-------
Q 045431 132 SDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVI-MGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST------- 202 (433)
Q Consensus 132 ~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 202 (433)
|+|+++++.+ +..+++|||.|++++|+|+++...+.. .| .+++.++.+.++++..+++.
T Consensus 126 t~G~t~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~~~~~~~g------------~~vv~v~~~~~~~f~~~~~~le~a~~~ 193 (447)
T PLN02607 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTG------------VKIVPIHCDSSNNFQVTPQALEAAYQE 193 (447)
T ss_pred cCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCC------------cEEEEEeCCCCCCCcCCHHHHHHHHHH
Confidence 9999999997 477889999999999999999877763 45 47788887755555444321
Q ss_pred ----CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCccccc----C--CCCcceEE
Q 045431 203 ----VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEI----P--GAKEVAIE 271 (433)
Q Consensus 203 ----~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~----~--~~~~~vi~ 271 (433)
..++|+|+++|||||||.++|.+++++|+++|++|+++||+||+|+++.+++. +.++.++ + +.++++++
T Consensus 194 a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~v 273 (447)
T PLN02607 194 AEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHI 273 (447)
T ss_pred HHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEE
Confidence 13789999999999999999999999999999999999999999999877653 4555543 1 12568999
Q ss_pred EecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh--hHHHHHHHHHHHHH
Q 045431 272 TSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF--KAVHEVIGFYKENT 349 (433)
Q Consensus 272 i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~~ 349 (433)
++||||.||++|+|+||+++.++.+ ...+... .....+|.++|.++..+|.+..+ .+++..++++++++
T Consensus 274 i~s~SK~fg~~GlRvG~ivs~n~~l-------~~~~~~~--~~~~~~s~~~q~~~~~~L~d~~~~~~~l~~~r~~l~~~~ 344 (447)
T PLN02607 274 VYSLSKDLGLPGFRVGTIYSYNDKV-------VTTARRM--SSFTLVSSQTQHLLASMLSDEEFTENYIRTNRERLRKRY 344 (447)
T ss_pred EEcchhcCCCCcceEEEEEEcCHHH-------HHHHHHH--hhcCCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999844332 2333332 22334688999999999987654 57888999999999
Q ss_pred HHHHHHHhhcCCeeecCCCccEEEEECCCC------C-hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc-ChhHH
Q 045431 350 DIIVETFNSLGFKVYGGKNAPYVWVQFPGR------S-SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG-HRGNV 421 (433)
Q Consensus 350 ~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~------~-~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~l 421 (433)
+.+.+.|++.|+.+..+.+|+|+|++++.. + ..++...+++++||.+.||..|+...++++||+|+. +++++
T Consensus 345 ~~~~~~L~~~gi~~~~~~ag~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~~~~g~fRi~fa~~~~~~l 424 (447)
T PLN02607 345 EMIVQGLRRAGIECLKGNAGLFCWMNLSPLLETPTREGELALWDSILREVKLNISPGSSCHCSEPGWFRVCFANMSEDTL 424 (447)
T ss_pred HHHHHHHHhCCCCcccCCeeEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEcCccccCCCCCCEEEEEeccCCHHHH
Confidence 999999999999988888999999999731 1 235666778778999999999987778999999986 89999
Q ss_pred HHHHHHHHHhh
Q 045431 422 LEACKRFKHLY 432 (433)
Q Consensus 422 ~~~l~~l~~~l 432 (433)
+++++||++++
T Consensus 425 ~~gl~Ri~~~l 435 (447)
T PLN02607 425 EVALKRIHRFM 435 (447)
T ss_pred HHHHHHHHHHH
Confidence 99999999876
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=376.97 Aligned_cols=345 Identities=23% Similarity=0.359 Sum_probs=286.7
Q ss_pred CCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHH
Q 045431 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCD 138 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~a 138 (433)
.+.+.|+|+.|+|+.++++.+.+++.+.+.. .....|++..|.++||+++++++.+ +..+++++|++|+|++++
T Consensus 27 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~a 102 (386)
T PRK07550 27 ADGPLIDLSQAVPGYPPPPELLRALAEAAAD----PAAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQA 102 (386)
T ss_pred cCCCeEEeCCCCCCCCCCHHHHHHHHHHHhC----cCCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHH
Confidence 3556899999999888888888888887742 3456898889999999999999985 666789999999999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEEc
Q 045431 139 ISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFFC 212 (433)
Q Consensus 139 l~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~ 212 (433)
+.+ +..++++||+|++++|+|+.+...++..| .+++.++.+.+.++..+++. ..++++++++
T Consensus 103 l~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~~~ 170 (386)
T PRK07550 103 FWAAMVTLAGAGDEVILPLPWYFNHKMWLDMLG------------IRPVYLPCDEGPGLLPDPAAAEALITPRTRAIALV 170 (386)
T ss_pred HHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcC------------CEEEEEecCCCcCCCCCHHHHHHHhcccCcEEEEe
Confidence 997 56778999999999999999998888888 58888888754455444321 2578899999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccceeeeec
Q 045431 213 SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVI 291 (433)
Q Consensus 213 ~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~ 291 (433)
+||||||.++|.+++++|+++|++||++||+||+|+++.+++. +.++.......+++++++||||.+|++|+|+||+++
T Consensus 171 ~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~ 250 (386)
T PRK07550 171 TPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVVA 250 (386)
T ss_pred CCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhccCcccceEeeec
Confidence 9999999999999999999999999999999999998866432 333443322356899999999999999999999999
Q ss_pred cccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCCcc
Q 045431 292 PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAP 370 (433)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~ 370 (433)
+++++ +.+.+.......+++.++|.++..++.+ ..+++++.++.++++++.+.+.|.++ ++.+. +.+|+
T Consensus 251 ~~~~~--------~~~~~~~~~~~~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~g~~ 320 (386)
T PRK07550 251 SPARI--------AEIEKFMDTVAICAPRIGQIAVAWGLPN-LADWRAGNRAEIARRRDAFRAVFARLPGWELL-ASGAY 320 (386)
T ss_pred CHHHH--------HHHHHHHhhcccCCCcHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHhCCCceeC-CCceE
Confidence 98875 6666666555666789999999998874 34678889999999999999999986 66554 56899
Q ss_pred EEEEECC--CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc-ChhHHHHHHHHHHHh
Q 045431 371 YVWVQFP--GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG-HRGNVLEACKRFKHL 431 (433)
Q Consensus 371 ~~~~~~~--~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~l~~~l~~l~~~ 431 (433)
|+|++++ +.++.++...+++++||.+.||..|+..+++++||+++. +++++++++++|+++
T Consensus 321 ~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~~~~~l~~~ 384 (386)
T PRK07550 321 FAYVRHPFPDRPSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFANADVAGIGELVERLRAF 384 (386)
T ss_pred EEEecCCCCCCCHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeecCCHHHHHHHHHHHHhh
Confidence 9999997 356788888888888999999999976667899999875 789999999999875
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=376.94 Aligned_cols=343 Identities=21% Similarity=0.279 Sum_probs=283.4
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCC-cEEEcCChHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEG-DIFVSDGAKCDIS 140 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~-~i~~~~G~~~al~ 140 (433)
++|+|+.|.|+.+.|+.+++++.+.+.. ....|++..|.++||+++++++.+ ++.++++ +|++|+|+++++.
T Consensus 25 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~-----~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~ 99 (387)
T PRK07777 25 GAVNLGQGFPDEDGPPEMLEAAQEAIAG-----GVNQYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIA 99 (387)
T ss_pred CeEEccCCCCCCCCCHHHHHHHHHHHhc-----CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHH
Confidence 6899999999887777788887776652 346798889999999999999875 5556665 7999999999998
Q ss_pred H-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccC-CcccCCCC-----CCCccEEEEcC
Q 045431 141 R-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAEN-GFFPDLST-----VARTDIIFFCS 213 (433)
Q Consensus 141 ~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~i~l~~ 213 (433)
+ +..++++||+|++++|+|+.+...++..| ..++.++.++++ ++..+++. .+++++|++++
T Consensus 100 ~~~~~~~~~gd~vli~~p~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~ 167 (387)
T PRK07777 100 AAVLGLVEPGDEVLLIEPYYDSYAAVIAMAG------------AHRVPVPLVPDGRGFALDLDALRAAVTPRTRALIVNS 167 (387)
T ss_pred HHHHHhcCCCCEEEEeCCCchhhHHHHHHCC------------CEEEEeecCCccCCCcCCHHHHHHhcCcccEEEEEcC
Confidence 7 67788999999999999999998888888 367777776542 33334322 25789999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccceeeeecc
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIP 292 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~ 292 (433)
||||||.+++.+++++|+++|++|+++||+||+|.++.+++. +.++.++++..+++++++||||.||++|+|+||++++
T Consensus 168 p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~ 247 (387)
T PRK07777 168 PHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGWKIGWACGP 247 (387)
T ss_pred CCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCcCceeEEEecC
Confidence 999999999999999999999999999999999999887653 4455555544568999999999999999999999999
Q ss_pred ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEE
Q 045431 293 KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYV 372 (433)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~ 372 (433)
++++ +.+...........+.+.|.++..++.. ...+++++++.++++++.+.+.|++.|+.+.++.+++|+
T Consensus 248 ~~l~--------~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~ 318 (387)
T PRK07777 248 APLI--------AAVRAAKQYLTYVGGAPFQPAVAHALDH-EDAWVAALRDSLQAKRDRLAAGLAEAGFEVHDSAGTYFL 318 (387)
T ss_pred HHHH--------HHHHHHHhhcccCCCCHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCCcceEE
Confidence 8875 6666555544455677888888888864 346788999999999999999999988888888899999
Q ss_pred EEECCC---CChHHHHHHHHHcCCeEecCCCCCCC---CCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 373 WVQFPG---RSSWDVFSEILEKTHVVTTPGSGFGP---GGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 373 ~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~f~~---~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
|++++. .++.++...+++++||.+.||..|+. .+++++||+++.+++++++++++|+++.
T Consensus 319 ~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~~~~~~l~~~l~~l~~~~ 384 (387)
T PRK07777 319 CADPRPLGYDDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFCKRDDTLDEAIRRLRALR 384 (387)
T ss_pred EecccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEecCCHHHHHHHHHHHHHHh
Confidence 999752 35678888887778999999998863 2357899999889999999999998864
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-48 Score=377.00 Aligned_cols=349 Identities=23% Similarity=0.346 Sum_probs=274.4
Q ss_pred CCCCceEEecCCCC---CCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc-c-CCCCCCcEEEcCC
Q 045431 60 YPDAEVISLGIGDT---TEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK-D-LGIEEGDIFVSDG 134 (433)
Q Consensus 60 ~~~~~~i~l~~g~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~-~-~~~~~~~i~~~~G 134 (433)
+.+.++|+|+.|+| ++++|+.+.+++.+.+. ....|+++.|.++||+++|+|+.+ + +++++++|++|+|
T Consensus 30 ~~~~~~i~l~~g~p~~~~~~~~~~i~~~~~~~~~------~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G 103 (404)
T PRK09265 30 EEGHKILKLNIGNPAPFGFEAPDEILRDVIRNLP------TAQGYSDSKGLFSARKAIMQYYQQKGIPDVDVDDIYIGNG 103 (404)
T ss_pred HcCCCeEEecCCCCCcCCCCCCHHHHHHHHHHhh------cCCCCCCCCCcHHHHHHHHHHHhccCCCCCCcccEEEeCC
Confidence 45667999999988 45678888888887653 235799999999999999999975 3 3789999999999
Q ss_pred hHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCC---C--CCCccE
Q 045431 135 AKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS---T--VARTDI 208 (433)
Q Consensus 135 ~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~ 208 (433)
+++++.+ +..++++||+|++++|+|+.+...++..| ..++.++.+.++++..+++ . .+++++
T Consensus 104 ~~~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g------------~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~ 171 (404)
T PRK09265 104 VSELIVMAMQALLNNGDEVLVPAPDYPLWTAAVSLSG------------GKPVHYLCDEEAGWFPDLDDIRSKITPRTKA 171 (404)
T ss_pred hHHHHHHHHHHhCCCCCEEEEeCCCCcChHHHHHHcC------------CEEEEEecccccCCCCCHHHHHHhccccceE
Confidence 9999987 57788999999999999999999888888 3666777654444433322 1 257899
Q ss_pred EEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEeccccccccccccee
Q 045431 209 IFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLG 287 (433)
Q Consensus 209 i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G 287 (433)
|+++|||||||.+++.+++++|+++|++||++||+||+|.++.+++. ..++..++. ..++++++||||++|+||+|+|
T Consensus 172 v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~~~pGlRiG 250 (404)
T PRK09265 172 IVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAP-DLLCVTFNGLSKAYRVAGFRVG 250 (404)
T ss_pred EEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCC-CceEEEEecchhhccCcccceE
Confidence 99999999999999999999999999999999999999999887653 455555543 3478999999999999999999
Q ss_pred eeecc--ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-hHHHHHHHHHHHHHHHHHHHHhhc-CCee
Q 045431 288 WTVIP--KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-KAVHEVIGFYKENTDIIVETFNSL-GFKV 363 (433)
Q Consensus 288 ~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~-g~~~ 363 (433)
|++++ +.+. ..+.+.+... .....+++.++|.++.++|.+... .++.+..+++.++++.+.+.|+++ |+.+
T Consensus 251 ~~v~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~ 325 (404)
T PRK09265 251 WMVLSGPKKHA----KGYIEGLDML-ASMRLCANVPAQHAIQTALGGYQSINELILPGGRLYEQRDRAWELLNAIPGVSC 325 (404)
T ss_pred EEEEeCchHHH----HHHHHHHHHH-hccccCCCcHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 99964 3221 0012223221 223455788999999999864322 222223356778899999999887 8888
Q ss_pred ecCCCccEEEEECCCC-----ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 364 YGGKNAPYVWVQFPGR-----SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 364 ~~~~~g~~~~~~~~~~-----~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
..|.+|+|+|++++.. ++.+.+..++.++||.+.||..|+..+++++|++++.+++++++++++|++++
T Consensus 326 ~~p~~g~~l~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~~~~~e~l~~~l~rl~~~l 399 (404)
T PRK09265 326 VKPKGALYAFPKLDPKVYPIHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVTLPRVDDLEEAIGRIGRFL 399 (404)
T ss_pred cCCCcceEEEEEecccccCCCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEeCCCHHHHHHHHHHHHHHH
Confidence 8888999999999732 35566667777889999999999765678999999878999999999999876
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-48 Score=371.28 Aligned_cols=330 Identities=22% Similarity=0.410 Sum_probs=270.1
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCC-CCCCcEEEcCChHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLG-IEEGDIFVSDGAKCD 138 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~-~~~~~i~~~~G~~~a 138 (433)
+.++|+|+.|.|..+.++.+.+++.+... ..+|+++.|.++||+++++|+.+ ++. +++++|++|+|++++
T Consensus 26 ~~~~i~l~~~~p~~~~~~~~~~~~~~~~~-------~~~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~ 98 (364)
T PRK07865 26 PDGIVDLSVGTPVDPVPPVIQEALAAAAD-------APGYPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKEL 98 (364)
T ss_pred CCCEEEcCCCCCCCCCCHHHHHHHHHHHh-------hCCCCCccCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHH
Confidence 34689999999887778888888776432 13798889999999999999985 664 789999999999999
Q ss_pred HHHH-HHh-cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCC
Q 045431 139 ISRL-QIV-FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNN 216 (433)
Q Consensus 139 l~~l-~~l-~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~n 216 (433)
+.++ ..+ +++||.|++++|+|+.+...++..|. +++.++. ..+++. .++++|+++||||
T Consensus 99 i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~------------~~~~~~~------~~~l~~-~~~~~v~~~~p~N 159 (364)
T PRK07865 99 VAWLPTLLGLGPGDVVVIPELAYPTYEVGARLAGA------------TVVRADS------LTELGP-QRPALIWLNSPSN 159 (364)
T ss_pred HHHHHHHHcCCCCCEEEECCCCcccHHHHHHhcCC------------EEEecCC------hhhCCc-ccceEEEEcCCCC
Confidence 9985 555 69999999999999999999988884 5555532 112222 5789999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCccccc---CCCCcceEEEecccccccccccceeeeeccc
Q 045431 217 PTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEI---PGAKEVAIETSSFSKYAGFTGVRLGWTVIPK 293 (433)
Q Consensus 217 PtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~---~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~ 293 (433)
|||.+++.+++++|+++|++||++||+||+|.++.+++.+.+.... ....+++|+++||||.+|++|+|+||+++++
T Consensus 160 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~i~~~~ 239 (364)
T PRK07865 160 PTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLAGYRAGFVAGDP 239 (364)
T ss_pred CCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhccCCCceeeEEEecCH
Confidence 9999999999999999999999999999999998876533322221 1124689999999999999999999999998
Q ss_pred cccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEE
Q 045431 294 ELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVW 373 (433)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~ 373 (433)
+++ +.+..........++.+.|.++.+++.+ .+++++.++.++++++.+.+.|+++|+.+..+++|+|+|
T Consensus 240 ~~~--------~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 309 (364)
T PRK07865 240 ALV--------AELLEVRKHAGMMVPAPVQAAMVAALGD--DAHVREQRERYARRRAVLRPALEAAGFRVDHSEAGLYLW 309 (364)
T ss_pred HHH--------HHHHHHHHhcCCCcCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCccEEEE
Confidence 885 6666655555566889999999998875 456788899999999999999999998888888999999
Q ss_pred EECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHH
Q 045431 374 VQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFK 429 (433)
Q Consensus 374 ~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~ 429 (433)
+.++. +..++...+ +++||.+.||..|+...++++||+++.+++++++++++|+
T Consensus 310 ~~~~~-~~~~~~~~l-~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~~~~~~~~l~ 363 (364)
T PRK07865 310 ATRGE-DCWDTVAWL-AERGILVAPGDFYGPAGAQHVRVALTATDERIAAAVERLA 363 (364)
T ss_pred EeCCC-CHHHHHHHH-HHCCEEEeCccccCcCCCCEEEEEecCCHHHHHHHHHHhh
Confidence 99852 344555554 5669999999988766678999999878999999999985
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-48 Score=374.59 Aligned_cols=349 Identities=20% Similarity=0.330 Sum_probs=282.8
Q ss_pred CCCceEEecCCCCC----CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCC
Q 045431 61 PDAEVISLGIGDTT----EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDG 134 (433)
Q Consensus 61 ~~~~~i~l~~g~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G 134 (433)
++.++|+|+.|+|. +++++.+.+++.+.+.. .....|++..|.+++|+++++++.+ ++.+++++|++|+|
T Consensus 29 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~----~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G 104 (403)
T TIGR01265 29 PEKPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRS----GKFNGYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSG 104 (403)
T ss_pred cCCCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhc----CCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecC
Confidence 45689999999984 67888999999988753 2345798899999999999999975 56678899999999
Q ss_pred hHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccE
Q 045431 135 AKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDI 208 (433)
Q Consensus 135 ~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 208 (433)
+++++.+ +..++++||+|++++|+|+.+...+...| .+++.++.+.++++..+++. .+++++
T Consensus 105 ~t~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ 172 (403)
T TIGR01265 105 CSQAIEICIEALANPGANILVPRPGFPLYDTRAAFSG------------LEVRLYDLLPEKDWEIDLDGLEALADEKTVA 172 (403)
T ss_pred hHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHcC------------CEEEEecCCcccCCccCHHHHHHHhCcCccE
Confidence 9999997 57778999999999999999988888888 47777776544343333321 357889
Q ss_pred EEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEeccccccccccccee
Q 045431 209 IFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLG 287 (433)
Q Consensus 209 i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G 287 (433)
+++++||||||.+++.+++++|+++|+++|++||+||+|+++.+++. ..++.+++. ..++|+++||||.|++||+|+|
T Consensus 173 v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~~~pGlRiG 251 (403)
T TIGR01265 173 IVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFAS-IVPVLSLGGISKRWVVPGWRLG 251 (403)
T ss_pred EEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhcc-CCcEEEEeecccccCCCcceEE
Confidence 99999999999999999999999999999999999999999987763 345666643 3469999999999989999999
Q ss_pred eeeccc--cccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeee
Q 045431 288 WTVIPK--ELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVY 364 (433)
Q Consensus 288 ~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~ 364 (433)
|+++++ .++. .++.+.+..... ...+++.++|.++.+++++....++++.+++++++++.+.+.|+.+ |+.+.
T Consensus 252 ~~v~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 327 (403)
T TIGR01265 252 WIIIHDPHGIFR---DTVLQGLKNLLQ-RILGPATIVQGALPDILENTPQEFFDGKISVLKSNAELCYEELKDIPGLVCP 327 (403)
T ss_pred EEEEeCchhhhH---HHHHHHHHHHhh-hhcCCChHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCCceec
Confidence 999853 3320 001122332221 2345788999999999976545788999999999999999999987 78877
Q ss_pred cCCCccEEEEECCCC------ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 365 GGKNAPYVWVQFPGR------SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 365 ~~~~g~~~~~~~~~~------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
.|.+|+|+|++++.. ++.++...+++++||.+.||..|+. ++++||+++.+++++++++++|++++
T Consensus 328 ~p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~--~~~iRis~~~~~~~l~~~l~~l~~~~ 399 (403)
T TIGR01265 328 KPEGAMYLMVKLELELFPEIKDDVDFCEKLVREESVICLPGSAFGL--PNWVRITITVPESMLEEACSRIKEFC 399 (403)
T ss_pred CCCceeEEEEeccccccCCCCCHHHHHHHHHHhCCEEEeCccccCC--CCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 788999999999732 5677878878788999999999963 68999999888899999999999876
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-48 Score=373.78 Aligned_cols=342 Identities=25% Similarity=0.360 Sum_probs=282.1
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc-cCCCCCCcEEEcCChHHHHHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK-DLGIEEGDIFVSDGAKCDISR 141 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~-~~~~~~~~i~~~~G~~~al~~ 141 (433)
..+|+|+.|.|+.+.|+.+.+++.+.. .....|++..|.++||+++++++.+ ++++++++|++|+|+++++.+
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~a~~~~~------~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~al~~ 103 (397)
T PRK07568 30 IKVYHLNIGQPDIKTPEVFFEAIKNYD------EEVLAYSHSQGIPELREAFAKYYKKWGIDVEPDEILITNGGSEAILF 103 (397)
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHh------cCCcCcCCCCCCHHHHHHHHHHHHHhCCCCCcceEEEcCChHHHHHH
Confidence 468999999999888888888887754 2345798899999999999999975 677889999999999999997
Q ss_pred -HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCccc-C---CCC--CCCccEEEEcCC
Q 045431 142 -LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFP-D---LST--VARTDIIFFCSP 214 (433)
Q Consensus 142 -l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~--~~~~~~i~l~~p 214 (433)
+..++++||+|++++|+|+.+...++..| .+++.++.+.+.++.. + ++. .+++++|+++||
T Consensus 104 ~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g------------~~~~~v~~~~~~g~~~~~~~~l~~~~~~~~~~v~i~~p 171 (397)
T PRK07568 104 AMMAICDPGDEILVPEPFYANYNGFATSAG------------VKIVPVTTKIEEGFHLPSKEEIEKLITPKTKAILISNP 171 (397)
T ss_pred HHHHhcCCCCEEEEecCCCccHHHHHHHcC------------CEEEEeecCcccCCCCCCHHHHHHhcCccceEEEEECC
Confidence 56778999999999999999988888888 4788888764444432 1 222 357889999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccceeeeeccc
Q 045431 215 NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPK 293 (433)
Q Consensus 215 ~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~ 293 (433)
|||||.+++.+++++|+++|++++++||+||+|.++.+++. +.++.++++..+++++++||||.+|++|+|+||+++++
T Consensus 172 ~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~ 251 (397)
T PRK07568 172 GNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCLISKN 251 (397)
T ss_pred CCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccCCCcceEEEecCC
Confidence 99999999999999999999999999999999999887654 45566665446789999999999998999999999864
Q ss_pred -cccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCCccE
Q 045431 294 -ELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAPY 371 (433)
Q Consensus 294 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~ 371 (433)
+++ +.+.+.... ..+++.+.|.++..+++. ...+++++++.++++++.+.+.|+++ ++.+..|.+|+|
T Consensus 252 ~~~~--------~~~~~~~~~-~~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~~ 321 (397)
T PRK07568 252 KELI--------AAAMKLCQA-RLSPPTLEQIGAAALLDT-PESYFDEVREEYKKRRDILYEELNKIPGVVCEKPKGAFY 321 (397)
T ss_pred HHHH--------HHHHHHhhc-cCCCCcHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCcceE
Confidence 453 444443322 345788999999998874 35688999999999999999999987 778788889999
Q ss_pred EEEECCCCChHHHHHHHHHc-----CCeEecCCCCCCC---CCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 372 VWVQFPGRSSWDVFSEILEK-----THVVTTPGSGFGP---GGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 372 ~~~~~~~~~~~~~~~~l~~~-----~gi~v~~g~~f~~---~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+|++++..+..++...++++ +||.+.||..|+. .+++++||+++.+++++++++++|++++
T Consensus 322 ~~~~l~~~~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~~~~~~~~~~~~~~l~~~l 390 (397)
T PRK07568 322 IIAKLPVDDAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYVLNEEDLKRAMEILKEAL 390 (397)
T ss_pred EEEecCCCCHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHHH
Confidence 99999865667777777664 6999999998852 1357999999888899999999999876
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=371.96 Aligned_cols=344 Identities=26% Similarity=0.427 Sum_probs=289.3
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDI 139 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~al 139 (433)
+.++++|+.|+|+.++++.+.+++.+.+.. ....|++..|.++||+++|+++.+ +.++++++|++|+|+++++
T Consensus 30 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~ 104 (393)
T PRK05764 30 GRDVISLGAGEPDFDTPEHIKEAAIEALDD-----GKTKYTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQAL 104 (393)
T ss_pred cCCEEEeCCCCCCCCCCHHHHHHHHHHHhc-----CCCCcCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHH
Confidence 457899999999988888999998888763 234698899999999999999975 5567889999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEEcC
Q 045431 140 SR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFFCS 213 (433)
Q Consensus 140 ~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~~ 213 (433)
.+ +..++++||.|++++|+|..+...++..| .+++.++.+.++++..+++. .++++++++++
T Consensus 105 ~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~ 172 (393)
T PRK05764 105 YNAFMALLDPGDEVIIPAPYWVSYPEMVKLAG------------GVPVFVPTGEENGFKLTVEQLEAAITPKTKALILNS 172 (393)
T ss_pred HHHHHHhcCCCCEEEecCCCCcchHHHHHHcC------------CEEEEEecCcccCCcCCHHHHHHhhCccceEEEEEC
Confidence 87 57788999999999999999999888888 47888888755455444321 25788999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCccccc-CCCCcceEEEecccccccccccceeeeec
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEI-PGAKEVAIETSSFSKYAGFTGVRLGWTVI 291 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~-~~~~~~vi~i~S~sK~~~~~G~r~G~l~~ 291 (433)
||||||.++|.+++++|+++|++|++++|+||+|+++.+++. +.++.++ .+..+++++++||||.+|++|+|+||+++
T Consensus 173 p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~i~~ 252 (393)
T PRK05764 173 PSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTGWRLGYAAG 252 (393)
T ss_pred CCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCccceeEEEec
Confidence 999999999999999999999999999999999999877643 3455554 22356899999999999999999999999
Q ss_pred cccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCCcc
Q 045431 292 PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAP 370 (433)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~ 370 (433)
+++++ +.+.+.......+++.++|.++.+++.. ...+++++++.++++++.+.+.|+++ |+.+..|.+++
T Consensus 253 ~~~~~--------~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~g~~ 323 (393)
T PRK05764 253 PKELI--------KAMSKLQSHSTSNPTSIAQYAAVAALNG-PQDEVEEMRQAFEERRDLMVDGLNEIPGLECPKPEGAF 323 (393)
T ss_pred CHHHH--------HHHHHHHhhcccCCChHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCcce
Confidence 98875 6666666555667899999999999873 34678889999999999999999998 88888888899
Q ss_pred EEEEECCCC------ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 371 YVWVQFPGR------SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 371 ~~~~~~~~~------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
|+|++++.. ++.++...+++++||.+.||..|+. ++++||++..+++++++++++|.++++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~--~~~vRis~~~~~~~~~~~i~~l~~~~~ 390 (393)
T PRK05764 324 YVFPNVSKLLGKSITDSLEFAEALLEEAGVAVVPGIAFGA--PGYVRLSYATSLEDLEEGLERIERFLE 390 (393)
T ss_pred EEEEecccccccccCCHHHHHHHHHHhCCEEEccccccCC--CCEEEEEecCCHHHHHHHHHHHHHHHH
Confidence 999999742 2367777888878999999998865 689999998899999999999998763
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-47 Score=364.33 Aligned_cols=329 Identities=22% Similarity=0.389 Sum_probs=269.0
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCC-CCCCcEEEcCChHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLG-IEEGDIFVSDGAKCD 138 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~-~~~~~i~~~~G~~~a 138 (433)
..++|+|+.|+|+.++++.+.+++.+... ...|+++.|.++||+++++|+.+ ++. +++++|++|+|++++
T Consensus 20 ~~~~i~l~~~~p~~~~~~~~~~~~~~~~~-------~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~ 92 (357)
T TIGR03539 20 PDGIVDLSVGTPVDPVPPLIRAALAAAAD-------APGYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKEL 92 (357)
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHHh-------hCCCCcccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHH
Confidence 34689999999988888888888876542 24788889999999999999975 664 889999999999999
Q ss_pred HHHH-HHh-cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCC
Q 045431 139 ISRL-QIV-FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNN 216 (433)
Q Consensus 139 l~~l-~~l-~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~n 216 (433)
+.++ ..+ +++||.|++++|+|+.+...++..|. +++.++. . ..++ ..++++|++++|||
T Consensus 93 i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~------------~~~~v~~--~----~~l~-~~~~~~v~~~~p~N 153 (357)
T TIGR03539 93 VAWLPTLLGLGPGDTVVIPELAYPTYEVGALLAGA------------TPVAADD--P----TELD-PVGPDLIWLNSPGN 153 (357)
T ss_pred HHHHHHHHcCCCCCEEEECCCCcHHHHHHHHhcCC------------EEeccCC--h----hhcC-ccCccEEEEeCCCC
Confidence 9985 555 69999999999999999988888883 5555431 1 1122 24789999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCccccc---CCCCcceEEEecccccccccccceeeeeccc
Q 045431 217 PTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEI---PGAKEVAIETSSFSKYAGFTGVRLGWTVIPK 293 (433)
Q Consensus 217 PtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~---~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~ 293 (433)
|||.++|.+++++|+++|++||++||+||+|.++.+++.+.+.... +...+++|+++||||.++++|+|+||+++++
T Consensus 154 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~G~~i~~~ 233 (357)
T TIGR03539 154 PTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAGFVAGDP 233 (357)
T ss_pred CcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccCCCceeEEEEecCH
Confidence 9999999999999999999999999999999988776543222211 1224579999999999999999999999998
Q ss_pred cccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEE
Q 045431 294 ELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVW 373 (433)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~ 373 (433)
+++ +.+.+.......+++.+.|.++.+++.+ ..++++.++.++++++.+.+.|++.|+.+..|.+|+|+|
T Consensus 234 ~~~--------~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~p~~~~~~~ 303 (357)
T TIGR03539 234 ALV--------AELLTVRKHAGLMVPAPVQAAMVAALGD--DGHVAEQKARYAARRAQLKPALEKAGFRIDHSEAGLYLW 303 (357)
T ss_pred HHH--------HHHHHHHhhcccCCCHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCCCccEEEE
Confidence 875 5666655555566889999999999874 356788899999999999999999898888888999999
Q ss_pred EECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHH
Q 045431 374 VQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRF 428 (433)
Q Consensus 374 ~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l 428 (433)
+.++. +..++...+ .++||.+.||..|+..+++++||+++.+++++++++++|
T Consensus 304 ~~~~~-~~~~~~~~l-~~~gV~v~pg~~f~~~~~~~iRis~~~~~~~i~~~~~~l 356 (357)
T TIGR03539 304 ATRGE-DAWDTVDRL-AELGILVAPGDFYGPAGSQHVRVALTATDERIAAAVARL 356 (357)
T ss_pred EECCC-CHHHHHHHH-HhCCEEECCccccCCCCCCeEEEEecCCHHHHHHHHHhh
Confidence 99863 445566555 566999999998876667899999988899999999987
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-48 Score=382.14 Aligned_cols=346 Identities=19% Similarity=0.297 Sum_probs=270.2
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHHHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDIS 140 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~al~ 140 (433)
+++|+|+.+.+.+ |..+++.+.+.+.... ......|+++.|.++||++||+|+.+ ++.+++++|++|+|+++++.
T Consensus 129 p~~i~~~~~~~~f--p~~~i~~a~~~l~~~~-~~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~ 205 (534)
T PLN02231 129 PSLLDKSETHGLF--SADAIERAWQILDQIP-GRATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVH 205 (534)
T ss_pred CccCCCCCccccC--CHHHHHHHHHHHHhcC-CccccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHH
Confidence 4577887655544 4466666666665421 12456899999999999999999975 67789999999999999999
Q ss_pred HH-HHhc-CCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCC-----------CCcc
Q 045431 141 RL-QIVF-GSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV-----------ARTD 207 (433)
Q Consensus 141 ~l-~~l~-~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~ 207 (433)
++ ..++ .+||.|++++|+|+.|...+...| ..++.++.+.+++|..+++.. .+++
T Consensus 206 ~~~~~l~~~~gd~Vli~~P~Y~~y~~~~~~~g------------~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k 273 (534)
T PLN02231 206 MMMQLLIRSEKDGILCPIPQYPLYSASIALHG------------GTLVPYYLDEATGWGLEISELKKQLEDARSKGITVR 273 (534)
T ss_pred HHHHHhccCCCCEEEEeCCCChhHHHHHHHcC------------CEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeE
Confidence 85 5666 479999999999999999999999 478888887665555553321 1689
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC--CCCcccccCC------CCcceEEEecccccc
Q 045431 208 IIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDD--NPRSIFEIPG------AKEVAIETSSFSKYA 279 (433)
Q Consensus 208 ~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~--~~~~~~~~~~------~~~~vi~i~S~sK~~ 279 (433)
+++++|||||||.++|.+++++|+++|++|+++||+||+|.++.+++ .+.++..+.. ...++|+++||||.+
T Consensus 274 ~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~ 353 (534)
T PLN02231 274 ALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGY 353 (534)
T ss_pred EEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCccc
Confidence 99999999999999999999999999999999999999999998853 2445554421 123689999999975
Q ss_pred -cccccceeeeec---cccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcC-----Ch-h---HHHHHHHHHH
Q 045431 280 -GFTGVRLGWTVI---PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPE-----GF-K---AVHEVIGFYK 346 (433)
Q Consensus 280 -~~~G~r~G~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-----~~-~---~~~~~~~~~~ 346 (433)
|++|+|+||+++ +++++ +.+.+... ...+++.+.|.++..+++.. .+ . +...+++.|+
T Consensus 354 ~g~pGlRiGy~~~~~~~~~l~--------~~l~k~~~-~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~ 424 (534)
T PLN02231 354 YGECGKRGGYMEVTGFTSDVR--------EQIYKVAS-VNLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLA 424 (534)
T ss_pred ccCCccceEEEEEecCCHHHH--------HHHHHHHh-hhcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHH
Confidence 789999999986 45553 55655443 23456788899888888642 22 2 3445688999
Q ss_pred HHHHHHHHHHhhc-CCeeecCCCccEEEEEC--CCC-----------ChHHHHHHHHHcCCeEecCCCCCCC-CCCCeEE
Q 045431 347 ENTDIIVETFNSL-GFKVYGGKNAPYVWVQF--PGR-----------SSWDVFSEILEKTHVVTTPGSGFGP-GGEGFIR 411 (433)
Q Consensus 347 ~~~~~l~~~l~~~-g~~~~~~~~g~~~~~~~--~~~-----------~~~~~~~~l~~~~gi~v~~g~~f~~-~~~~~iR 411 (433)
++++.+.+.|+++ |+.+.+|++|+|+|+++ +.. .+..+...+++++||.+.||+.|+. .+..+||
T Consensus 425 ~r~~~l~~~L~~~~gi~~~~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~R 504 (534)
T PLN02231 425 RRAKTLEDALNSLEGVTCNKAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHFR 504 (534)
T ss_pred HHHHHHHHHHhcCCCceecCCCeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCCCeEE
Confidence 9999999999998 89999999999999655 321 1223456678888999999999985 3456899
Q ss_pred EeeccChhHHHHHHHHHHHhh
Q 045431 412 VSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 412 i~~~~~~~~l~~~l~~l~~~l 432 (433)
+++..+++++++++++|++++
T Consensus 505 it~~~~~e~l~eal~RL~~~~ 525 (534)
T PLN02231 505 CTILPQEDKIPAIVSRLTEFH 525 (534)
T ss_pred EEeCCCHHHHHHHHHHHHHHH
Confidence 999889999999999999875
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-48 Score=374.03 Aligned_cols=359 Identities=21% Similarity=0.267 Sum_probs=273.4
Q ss_pred HHHHHHHHHhcCCC-------CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHh-c
Q 045431 49 IARRKAAHMLKYPD-------AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFY-K 120 (433)
Q Consensus 49 ~~~~~~~~~~~~~~-------~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~-~ 120 (433)
+..+...+...+.+ .++|+|+.|+|++++|+.+.++. +++. . .+|+++.|.++||+++++++. +
T Consensus 79 ~~~r~~~~~~~~~~~~g~~~l~~~i~l~~g~p~~~~~~~v~e~~-~~~~-----~--~~Y~~~~g~~~lreaia~~~~~~ 150 (527)
T PRK09275 79 IEERFEAFLEEHKDVPGIDFLRDAVSYVRDQLGFDADEFVYELV-DGII-----G--DNYPVPDRMLKHTEKIVKDYLRQ 150 (527)
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHhhcCCCCCCCCCHHHHHHH-HHHh-----c--CCCCCCCCCHHHHHHHHHHHHHh
Confidence 34455555554443 24799999999999999988844 4443 1 259999999999999999654 3
Q ss_pred c--CCC-C--CCcEEEcCChHHHHHH-HHH-----hcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEee
Q 045431 121 D--LGI-E--EGDIFVSDGAKCDISR-LQI-----VFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMR 189 (433)
Q Consensus 121 ~--~~~-~--~~~i~~~~G~~~al~~-l~~-----l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 189 (433)
. ... + +++|++|+|+++++.. +.+ +++|||+|++++|+|+.|...++..|.. ..++.++
T Consensus 151 ~~~~~~~~~~~~~I~vT~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l~g~~----------~~~v~v~ 220 (527)
T PRK09275 151 EMCGGRPPKGEFDLFAVEGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPELPRYD----------LEVVHIN 220 (527)
T ss_pred hccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHHHcCCC----------eEEEEee
Confidence 2 222 2 3499999999999986 443 6899999999999999999998887632 2455565
Q ss_pred cCccCCcccCCC---C--CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHH--cCCEEEEeccccccccCCCCCccccc
Q 045431 190 CTAENGFFPDLS---T--VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKD--NGSIIVYDSAYALYISDDNPRSIFEI 262 (433)
Q Consensus 190 ~~~~~~~~~~~~---~--~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~--~~~~li~De~~~~~~~~~~~~~~~~~ 262 (433)
.+.+++|..+.+ + .+++|+|+++|||||||.++|.+++++|+++|++ ++++||+||+|.++.+. +.++.+.
T Consensus 221 ~~~~~~f~~d~~~l~~~~~~~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~--~~s~~~~ 298 (527)
T PRK09275 221 ADEENEWQYPDSELEKLRDPSIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDD--FRSLFAV 298 (527)
T ss_pred cCcccCCCCCHHHHHhhcCCCCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhccc--ccCHHHh
Confidence 555555655532 2 3689999999999999999999999999999965 59999999999988652 3444443
Q ss_pred CCCCcceEEEecccccccccccceeeeecccc-----ccccC------------------------CcchhHHHHHHHhh
Q 045431 263 PGAKEVAIETSSFSKYAGFTGVRLGWTVIPKE-----LLFSD------------------------GFPVAKDFNRIVCT 313 (433)
Q Consensus 263 ~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~-----~~~~~------------------------~~~~~~~~~~~~~~ 313 (433)
.++++|+++||||.||++|||+||++++++ ++..- ..++.++..++...
T Consensus 299 --~~~~~I~v~SfSK~f~mtG~RlG~i~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~ 376 (527)
T PRK09275 299 --LPYNTILVYSFSKYFGATGWRLGVIALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALN 376 (527)
T ss_pred --CCCCEEEEeehhhhccCcHhHHhhhhcCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHh
Confidence 357899999999999999999999999987 22100 00112223555666
Q ss_pred ccCCCcHHHHHHH-----HHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCC----------
Q 045431 314 CFNGASNISQAGG-----LACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPG---------- 378 (433)
Q Consensus 314 ~~~~~~~~~q~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~---------- 378 (433)
...+.+.+.|.++ .++++ ....+++.+++.+++|++.+.+.|. .++...+|.+++|+|++++.
T Consensus 377 ~t~~~s~p~Q~a~al~~~~all~-~~~~~~~~~~~~~~~Rr~~l~~~Lg-~~~~~~~p~g~fY~~~di~~~~~~~~g~~f 454 (527)
T PRK09275 377 HTAGLSTPQQVQMALFSLFALLD-EEDAYKKAMKDIIRRRYKALYEGLG-LPEPEDPNNAAYYTLIDLEEWAEKNYGKEF 454 (527)
T ss_pred hccCCCCHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHcC-CCCcCCCCCeeEEEEEEhHHhhhhccCchh
Confidence 6778888999862 24454 3446788999999999999988883 23333567899999999862
Q ss_pred -------CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc-ChhHHHHHHHHHHHhh
Q 045431 379 -------RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG-HRGNVLEACKRFKHLY 432 (433)
Q Consensus 379 -------~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~l~~~l~~l~~~l 432 (433)
.++.+++.+|++++||.+.||..|+. +++++|+|+++ ++++++++.++|++++
T Consensus 455 ~~~l~~~~~~~~f~~~Ll~e~gV~v~PG~~Fg~-~~~~vRis~a~~~~~~~~~~~~rl~~~l 515 (527)
T PRK09275 455 ADYLKKNYSPVDLLFRLAEETGVVLLPGGGFGG-PEWSVRVSLANLNEEDYAKIGKAIRKLL 515 (527)
T ss_pred hhhhhccCCHHHHHHHHHhcCCEEEeCchhhCC-CCCeEEEEEecCCHHHHHHHHHHHHHHH
Confidence 14677889999999999999999975 46789999985 8899999999999876
|
|
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=332.38 Aligned_cols=350 Identities=20% Similarity=0.310 Sum_probs=296.9
Q ss_pred CceEEecCCCCC----CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccC--CCCCCcEEEcCChH
Q 045431 63 AEVISLGIGDTT----EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDL--GIEEGDIFVSDGAK 136 (433)
Q Consensus 63 ~~~i~l~~g~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~--~~~~~~i~~~~G~~ 136 (433)
.++|.++.|+|. +++.+...+|+.+++.. ....+|+|..|.+..|+++|+|+++.+ ..++++|++|+|+.
T Consensus 61 k~iipl~~GDPsv~~~~~ts~~a~~Av~~al~S----gk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~ 136 (447)
T KOG0259|consen 61 KPILPLGHGDPSVYPCFRTSQEAEQAVVDALRS----GKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCS 136 (447)
T ss_pred ceeccCCCCCCCccccccCCHHHHHHHHHHHhc----CCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccch
Confidence 479999999985 55678888899988874 667799999999999999999998743 46899999999999
Q ss_pred HHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEE
Q 045431 137 CDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIF 210 (433)
Q Consensus 137 ~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~ 210 (433)
+|+++ +..+.+||..|+++.|+|+.|.......| +++..+..-++.+|..|++. .++|.+++
T Consensus 137 qAIe~~i~~LA~p~aNILlPrPGfp~Y~~~a~~~~------------lEVR~ydlLPe~~weIDL~~veal~DENT~Aiv 204 (447)
T KOG0259|consen 137 QAIELAISSLANPGANILLPRPGFPLYDTRAIYSG------------LEVRYYDLLPEKDWEIDLDGVEALADENTVAIV 204 (447)
T ss_pred HHHHHHHHHhcCCCCceecCCCCCchHHHhhhhcC------------ceeEeecccCcccceechHHHHHhhccCeeEEE
Confidence 99998 68888999999999999999998887777 58888888888888888653 47999999
Q ss_pred EcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccceeee
Q 045431 211 FCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWT 289 (433)
Q Consensus 211 l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l 289 (433)
++||+||+|.++|.+.+++|++.|+|++++||.||+|.++.|++. ..++..+...- -|+++||.||.|=.||||+||+
T Consensus 205 viNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiV-PVitlggisKrW~VPGWRlGWi 283 (447)
T KOG0259|consen 205 VINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIV-PVITLGGISKRWIVPGWRLGWI 283 (447)
T ss_pred EeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccC-ceEeecccccccccCCceeeeE
Confidence 999999999999999999999999999999999999999999876 45666654322 3799999999777899999999
Q ss_pred eccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCe-eecCC
Q 045431 290 VIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFK-VYGGK 367 (433)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~-~~~~~ 367 (433)
+..+..=......+.+.+..+. ....+++.+.|.|.-..|+....+........++.+.+..++.|++. ++. ...|+
T Consensus 284 ~~hD~~gvf~~~~~~q~~~~~~-~~~~~p~TiiQ~AlP~IL~kTp~efF~k~~~~lk~na~l~y~~Lk~IP~l~cp~kPe 362 (447)
T KOG0259|consen 284 ALHDPRGVFRDTKVVQGIKNFL-DIIPGPATIIQGALPDILEKTPEEFFDKKLSFLKSNADLCYSRLKDIPCLTCPVKPE 362 (447)
T ss_pred EEecccccccchHHHHHHHHHH-hccCCccHhHHHHhHHHHHhChHHHHHHHHHHHHhhHHHHHHHHhcCCCcccCcCCC
Confidence 9876652112222223344333 34566899999999999997777888999999999999999999998 887 67889
Q ss_pred CccEEEEECC------CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 368 NAPYVWVQFP------GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 368 ~g~~~~~~~~------~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+++|+|+.+. -.++.++...|.++..+.+.||..|+. ++|+|+++..+.+.+++++.||+++.
T Consensus 363 g~mylmv~l~~s~~~~~~dD~dFc~kL~~Eesv~~LPG~af~~--~nw~Ri~i~~~~~~leea~~Rik~Fc 431 (447)
T KOG0259|consen 363 GCMYLMVKLNLSLFPDIEDDVDFCQKLAREESVICLPGQAFGL--KNWLRIVITVEEEMLEEAFSRIKEFC 431 (447)
T ss_pred cceEEEeccchhhhccccccHHHHHHHhhhcceEEeccccccC--CCeEEEEEccChHHHHHHHHHHHHHH
Confidence 9999999986 246778999999999999999999975 68999999999999999999999874
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=366.48 Aligned_cols=350 Identities=19% Similarity=0.273 Sum_probs=259.7
Q ss_pred CceEEecCCCCCC-CChH-HHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHH
Q 045431 63 AEVISLGIGDTTE-PIPE-VITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCD 138 (433)
Q Consensus 63 ~~~i~l~~g~~~~-~~~~-~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~a 138 (433)
+++|+|+.|.|+. +.|. .+.+++.+.+...........|++..|.++||++||+|+++ ++++++++|++|+|++++
T Consensus 30 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~~a 109 (416)
T PRK09440 30 PGAIMLGGGNPAHIPEMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQSA 109 (416)
T ss_pred CCceeccCCCCCccCCHHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccChHHH
Confidence 4689999999874 3333 44555555554321112346899999999999999999975 777899999999999999
Q ss_pred HHHH-HHhcC-----CCCEEEE-eCCCChhhhhhHHHhCCcccccccccccceEEEeecCccC-CcccCC---CCCCCcc
Q 045431 139 ISRL-QIVFG-----SNVTMAV-QDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAEN-GFFPDL---STVARTD 207 (433)
Q Consensus 139 l~~l-~~l~~-----~gd~Vl~-~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~ 207 (433)
+.++ ..++. +||.|++ ++|+|+.|.......+... . .....++.+.++ ++..++ +...+++
T Consensus 110 l~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~---~-----~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 181 (416)
T PRK09440 110 FFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFV---S-----YRPNIELLPEGQFKYHVDFEHLHIDEDTG 181 (416)
T ss_pred HHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhccCcee---e-----cccccccccccccccCCCHHHcccCCCce
Confidence 9975 66664 6899999 7999999987655444210 0 011122222110 122222 2235778
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccccccee
Q 045431 208 IIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLG 287 (433)
Q Consensus 208 ~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G 287 (433)
+++++|||||||.++|.+++++|+++|++|+++||+||+|.++.......+.. +...+++|+++||||+ ++||+|+|
T Consensus 182 ~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~--~~~~~~vI~~~SfSK~-~~pGlRiG 258 (416)
T PRK09440 182 AICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPGIIFSEAT--PLWNPNIILCMSLSKL-GLPGVRCG 258 (416)
T ss_pred EEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCCcchhhcC--ccccCCeEEEeccccc-CCCcceEE
Confidence 99999999999999999999999999999999999999998542211001111 1124689999999997 78999999
Q ss_pred eeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-hHHHH-HHHHHHHHHHHHHHHHhhc----CC
Q 045431 288 WTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-KAVHE-VIGFYKENTDIIVETFNSL----GF 361 (433)
Q Consensus 288 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~-~~~~~~~~~~~l~~~l~~~----g~ 361 (433)
|++++++++ +.+.........+++.+.|.++.+++++..+ .++.+ +++.|+++++.+.+.|++. ++
T Consensus 259 ~~i~~~~l~--------~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~l~~~~~ 330 (416)
T PRK09440 259 IVIADEEII--------EALSNMNGIISLAPGRLGPAIAAEMIESGDLLRLSETVIRPFYRQKVQLAIALLRRYLPDEPC 330 (416)
T ss_pred EEeCCHHHH--------HHHHHHHHHhccCCCcHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCe
Confidence 999998885 6677666655566899999999999986554 44444 6888999999998888764 45
Q ss_pred eeecCCCccEEEEECCC--CChHHHHHHHHHcCCeEecCCCCCCCC-------CCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 362 KVYGGKNAPYVWVQFPG--RSSWDVFSEILEKTHVVTTPGSGFGPG-------GEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 362 ~~~~~~~g~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~f~~~-------~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
.+..|.+|+|+|++++. .++.++...+ +++||.+.||+.|+.. +.+++||+++.+.+++++++++|++++
T Consensus 331 ~~~~p~gg~fiw~~~~~~~~~~~~~~~~l-~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~~~~~~l~~~i~~l~~~~ 409 (416)
T PRK09440 331 LIHKPEGAIFLWLWFKDLPITTEELYQRL-KARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYVQDDEEIEKGIAILAEEV 409 (416)
T ss_pred EEecCCCceEEEEECCCCCCCHHHHHHHH-HHCCEEEechHhhCCCCccccCCcCceEEEEecCCHHHHHHHHHHHHHHH
Confidence 66678899999999984 4556666655 5679999999998542 136899999778999999999999876
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-47 Score=360.73 Aligned_cols=323 Identities=18% Similarity=0.324 Sum_probs=262.0
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR 141 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~ 141 (433)
+.++|+|+.|++++++|+.+.+++.+.+.. ...|+ ..|.++||+++|+++ ++++++|++|+|+++++.+
T Consensus 29 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~------~~~Y~-~~~~~~lr~~ia~~~----~~~~~~I~it~G~~~al~~ 97 (357)
T PRK14809 29 PDDLVKLSSNENPHGPSPAAVEAIREAAER------VHSYP-KASHADLTAALADRW----DVSPEQVWLANGGDGALDY 97 (357)
T ss_pred ccceeEecCCCCCCCCCHHHHHHHHHHHhh------hhcCC-CCCHHHHHHHHHHHh----CCCcceEEECCCHHHHHHH
Confidence 446999999999998899999998887642 35674 578999999999998 7899999999999999997
Q ss_pred -HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC----CCCccEEEEcCCCC
Q 045431 142 -LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST----VARTDIIFFCSPNN 216 (433)
Q Consensus 142 -l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~l~~p~n 216 (433)
+..++++||.|++++|+|+.+.......| ..++.++.+.++++..+.+. ..++++|++|||||
T Consensus 98 ~~~~~~~~gd~V~v~~P~y~~~~~~~~~~g------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~i~l~~p~N 165 (357)
T PRK14809 98 LARAMLDPGDTVLVPDPGFAYYGMSARYHH------------GEVREYPVSKADDFEQTADTVLDAYDGERIVYLTSPHN 165 (357)
T ss_pred HHHHhcCCCCEEEEeCCChHHHHHHHHHcC------------CeEEEEecccCcCCCcCHHHHHHhhcCCcEEEEeCCCC
Confidence 57778999999999999998887777777 46777777654455444322 24689999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecccccc
Q 045431 217 PTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELL 296 (433)
Q Consensus 217 PtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~ 296 (433)
|||.++|.+++++|+++|++ +++||+||+|.++.+++. .+..++ ..+++++++||||.+|++|+|+||++++++++
T Consensus 166 PTG~~~s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~~--~~~~~~-~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~ 241 (357)
T PRK14809 166 PTGSEIPLDEVEALAERTDE-ETLVVVDEAYGEFAERPS--AVALVE-ERDDVAVLRTFSKAYGLAGLRLGYAVVPEEWA 241 (357)
T ss_pred CCCcCCCHHHHHHHHHhCcc-CcEEEEechhhhccCCch--hHHHHh-hCCCEEEEecchhHhcCcchhheeeecCHHHH
Confidence 99999999999999999875 789999999999876432 222222 24689999999999999999999999998885
Q ss_pred ccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEEC
Q 045431 297 FSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQF 376 (433)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~ 376 (433)
+.+.+.. ...+.+.++|.++.+++++ ..++++.++.++++++.+.+.|+..++ +.+|+|+|+++
T Consensus 242 --------~~~~~~~--~~~~~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~----~~~g~f~~~~~ 305 (357)
T PRK14809 242 --------DAYARVN--TPFAASELACRAGLAALDD--DEHVERTVETARWAREYIREELDAPTW----ESAGNFVLAEV 305 (357)
T ss_pred --------HHHHHhC--CCCCCCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHhcCccC----CCCCCEEEEEC
Confidence 5665543 2455788999989998874 467888899999999999999976422 46899999998
Q ss_pred CCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 377 PGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 377 ~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
+ +..++...+ +++||.+.||..|+. +++|||++. +.+++++++++|+++++
T Consensus 306 ~--~~~~~~~~l-~~~gv~v~~g~~f~~--~~~iRls~~-~~~~~~~~l~~L~~~l~ 356 (357)
T PRK14809 306 G--DASAVAEAA-QERGVIVRDCTSFGL--PECIRITCG-TREETERAVEVLNEVLA 356 (357)
T ss_pred C--CHHHHHHHH-HHCCEEEEECccCCC--CCeEEEecC-CHHHHHHHHHHHHHHhc
Confidence 6 455666665 566999999999863 479999975 57899999999998874
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-46 Score=356.52 Aligned_cols=327 Identities=19% Similarity=0.355 Sum_probs=264.9
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQ 143 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l~ 143 (433)
++++|+.|+++.++|+.+++++.+.+. ....|+ ..+.++||+++|+|+ ++++++|++|+|+++++.++.
T Consensus 20 ~~~~l~~~~~~~~~p~~~~~a~~~~~~------~~~~Y~-~~~~~~lr~~ia~~~----~~~~~~i~it~Ga~~~l~~~~ 88 (354)
T PRK06358 20 MILDFSANINPLGVPESLKQAITENLD------KLVEYP-DPDYLELRKRIASFE----QLDLENVILGNGATELIFNIV 88 (354)
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHHH------hhhcCC-CccHHHHHHHHHHHh----CCChhhEEECCCHHHHHHHHH
Confidence 479999999888889999999988763 245685 457899999999998 789999999999999999864
Q ss_pred HhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC--C-CC-CCCccEEEEcCCCCccc
Q 045431 144 IVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD--L-ST-VARTDIIFFCSPNNPTG 219 (433)
Q Consensus 144 ~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~-~~~~~~i~l~~p~nPtG 219 (433)
..+.+ +.|++++|+|+.+...++..| .+++.++.+.++++..+ + +. ..++++++++|||||||
T Consensus 89 ~~~~~-~~v~i~~P~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~~P~NPtG 155 (354)
T PRK06358 89 KVTKP-KKVLILAPTFAEYERALKAFD------------AEIEYAELTEETNFAANEIVLEEIKEEIDLVFLCNPNNPTG 155 (354)
T ss_pred HHhCC-CcEEEecCChHHHHHHHHHcC------------CeeEEEeCccccCCCccHHHHHhhccCCCEEEEeCCCCCCC
Confidence 44554 689999999999999998888 47788887655444333 1 11 24689999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCccc-ccCCCCcceEEEecccccccccccceeeeeccc-cccc
Q 045431 220 AAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIF-EIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPK-ELLF 297 (433)
Q Consensus 220 ~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~-~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~-~~~~ 297 (433)
.+++.+++++|+++|++|+++||+||+|.+|.+++.+.+.. .++ ..+++|+++||||++|++|+|+||+++++ .++
T Consensus 156 ~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~-~~~~vi~~~S~SK~~gl~G~RiG~lv~~~~~~~- 233 (354)
T PRK06358 156 QLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLE-NFKNLIIIRAFTKFFAIPGLRLGYGLTSNKNLA- 233 (354)
T ss_pred CccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhcc-CCCCEEEEEechhhccCcchhheeeecCCHHHH-
Confidence 99999999999999999999999999999998876443333 333 34789999999999999999999999864 443
Q ss_pred cCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCCccEEEEEC
Q 045431 298 SDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAPYVWVQF 376 (433)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~~~~ 376 (433)
+.+.+... ....+.++|.++..++++ ..++++.++.++++++.+.+.|+++ |+.+..+ .|.|+|+++
T Consensus 234 -------~~~~~~~~--~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~-~g~f~~~~~ 301 (354)
T PRK06358 234 -------EKLLQMRE--PWSINTFADLAGQTLLDD--KEYIKKTIQWIKEEKDFLYNGLSEFKGIKVYKP-SVNFIFFKL 301 (354)
T ss_pred -------HHHHHhCC--CCcchHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCC-cceEEEEEc
Confidence 55555432 345789999999999863 3567888999999999999999987 7777766 567999999
Q ss_pred CCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 377 PGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 377 ~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+. ..++...+++ +||.+.||+.|+..+++++||++ .+.++.+++++.|++++
T Consensus 302 ~~--~~~~~~~l~~-~gI~v~~~~~f~~~~~~~iRls~-~~~~~~~~l~~~l~~~~ 353 (354)
T PRK06358 302 EK--PIDLRKELLK-KGILIRSCSNYRGLDENYYRVAV-KSREDNKKLLKALEVIL 353 (354)
T ss_pred Cc--hHHHHHHHHH-CCeEEEECCCCCCCCCCEEEEEe-CCHHHHHHHHHHHHHHh
Confidence 74 3677777765 59999999999654568999996 67788888888888765
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-46 Score=358.28 Aligned_cols=326 Identities=17% Similarity=0.265 Sum_probs=258.0
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRL 142 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l 142 (433)
.++|+|+.+++++++|+.+.+++.+.+.. ...|++. +..+||++||+|+ ++++++|++|+|+++++.++
T Consensus 22 ~~~i~l~~~~n~~~~~~~~~~a~~~~~~~------~~~Y~~~-~~~~Lr~aia~~~----~v~~~~I~it~G~~~~i~~~ 90 (360)
T PRK07392 22 DAILDFSASINPLGPPESVIAAIQSALSA------LRHYPDP-DYRELRLALAQHH----QLPPEWILPGNGAAELLTWA 90 (360)
T ss_pred ccEEEeCCcCCCCCCCHHHHHHHHHHHHH------hhcCCCc-CHHHHHHHHHHHh----CcChhhEEECCCHHHHHHHH
Confidence 36899999999999999999998876642 4578654 5689999999998 78999999999999999986
Q ss_pred HHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCc---ccCCCC----CCCccEEEEcCCC
Q 045431 143 QIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGF---FPDLST----VARTDIIFFCSPN 215 (433)
Q Consensus 143 ~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~i~l~~p~ 215 (433)
...+.+||.|++++|+|+.+...++..| .+++.++.+.++++ ..+++. ..++++++++|||
T Consensus 91 ~~~l~~g~~vlv~~P~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nP~ 158 (360)
T PRK07392 91 GRELAQLRAVYLITPAFGDYRRALRAFG------------ATVKELPLPLDQPSPGLTLRLQTLPPQLTPNDGLLLNNPH 158 (360)
T ss_pred HHHhCCCCeEEEECCCcHHHHHHHHHcC------------CeEEEEecccccCCcccccCHHHHHHhccCCCEEEEeCCC
Confidence 4445678999999999999999999999 47888888765543 122221 2567899999999
Q ss_pred CccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccc
Q 045431 216 NPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKEL 295 (433)
Q Consensus 216 nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~ 295 (433)
||||.+++.++ |.++++++++ +|+||+|.+|.+++.+.++.......+++|+++||||++|++|+|+||+++++++
T Consensus 159 NPTG~~~~~~~---l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~~~~ 234 (360)
T PRK07392 159 NPTGKLWSREA---ILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIAHPDR 234 (360)
T ss_pred CCCCCCcCHHH---HHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCchheeeeeCCHHH
Confidence 99999999655 5555667885 6669999999876543343322223468999999999999999999999999887
Q ss_pred cccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCCccEEEE
Q 045431 296 LFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAPYVWV 374 (433)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~~ 374 (433)
+ +.+.... ....++.++|.++.+++++. .+.+..++.++++++.+.+.|+++ |+.+.+ .+++|+|+
T Consensus 235 ~--------~~~~~~~--~~~~~s~~~q~~~~~~l~~~--~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~-~~~~fl~~ 301 (360)
T PRK07392 235 L--------QRWQQWR--DPWPVNGLAAAAAIAALADR--DFQQQTWAWLPPAREALFQGLASLPGLTPLP-SAANFLLV 301 (360)
T ss_pred H--------HHHHhhC--CCCCCCHHHHHHHHHHhccH--HHHHHHHHHHHHHHHHHHHHHHhCCCcEECC-CCCCEEEE
Confidence 5 5555433 23568999999999999753 455677778999999999999987 777654 68999999
Q ss_pred ECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccC--hhHHHHHHHHHH
Q 045431 375 QFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGH--RGNVLEACKRFK 429 (433)
Q Consensus 375 ~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~--~~~l~~~l~~l~ 429 (433)
+++. ++.++...+++++||.+.||..|+..+++++||+++.+ .+++.++++++.
T Consensus 302 ~~~~-~~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~~~l~~al~~~~ 357 (360)
T PRK07392 302 QSQG-SALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAVRTEAENQRLLEALAAIL 357 (360)
T ss_pred EcCC-CHHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHh
Confidence 9875 56777778777789999999999765678999998664 356777777653
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-47 Score=365.57 Aligned_cols=340 Identities=18% Similarity=0.216 Sum_probs=260.3
Q ss_pred CceEEecCCCC-CCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEE--EcCChHH
Q 045431 63 AEVISLGIGDT-TEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIF--VSDGAKC 137 (433)
Q Consensus 63 ~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~--~~~G~~~ 137 (433)
+++|+|+.|.| ++++|....+++.+++..........+|+++.|.++||+++++|+.+ +..+++++|+ .|.|+++
T Consensus 29 ~~~i~l~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~~ 108 (404)
T PTZ00376 29 PSKVNLGIGAYRDENGKPYVLESVRKAEKIIAEKNLDKEYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTG 108 (404)
T ss_pred cccEecccceeECCCCCEehhhHHHHHHHHhccccCCCCCCCCCCCHHHHHHHHHHhcCCCccccccCeEEEeeccCcch
Confidence 46899999986 45566555666666653322114457899999999999999999975 2346889999 5999999
Q ss_pred HHHHH----HHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCC---C-----CCC
Q 045431 138 DISRL----QIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS---T-----VAR 205 (433)
Q Consensus 138 al~~l----~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----~~~ 205 (433)
++.++ ..+++|||+|++++|+|+.|...++.+| .+++.++..+++++..+++ + .++
T Consensus 109 al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G------------~~~~~v~l~~~~~~~~d~~~l~~~~~~~~~~ 176 (404)
T PTZ00376 109 ALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFKSAG------------LNVKEYRYYDPKTKGLDFDGMLEDLRTAPNG 176 (404)
T ss_pred HHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcC------------CceeeccccCcccCCcCHHHHHHHHHhCCCC
Confidence 98864 2567999999999999999999999999 4788888743322333322 1 134
Q ss_pred ccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC---CCCcccccCCCCcceEEEeccccccccc
Q 045431 206 TDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDD---NPRSIFEIPGAKEVAIETSSFSKYAGFT 282 (433)
Q Consensus 206 ~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~---~~~~~~~~~~~~~~vi~i~S~sK~~~~~ 282 (433)
+++++++|||||||.++|.+++++|+++|++|+++||+||+|.++.+++ .+.++..+....+++|+++||||+++++
T Consensus 177 ~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~ 256 (404)
T PTZ00376 177 SVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLY 256 (404)
T ss_pred CEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCccccc
Confidence 5666678999999999999999999999999999999999999988864 1223444433346899999999999999
Q ss_pred ccceeee---eccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-----hHHHHHHHHHHHHHHHHHH
Q 045431 283 GVRLGWT---VIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-----KAVHEVIGFYKENTDIIVE 354 (433)
Q Consensus 283 G~r~G~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~l~~ 354 (433)
|+|+||+ +++++++. ++.+.+.+.......+.+.++|.++..++++... .++++.+++++++++.+.+
T Consensus 257 GlRvG~~~~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~ 332 (404)
T PTZ00376 257 GERIGALHIVCANKEEAA----NVLSQLKLIIRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGRIQNMRQLLYD 332 (404)
T ss_pred ccccceEEEEeCCHHHHH----HHHHHHHHHHhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 46666430 0112333323333444678999999999986431 3466778899999999999
Q ss_pred HHhhcC----CeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec-cChhHHHHHHHHHH
Q 045431 355 TFNSLG----FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF-GHRGNVLEACKRFK 429 (433)
Q Consensus 355 ~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~-~~~~~l~~~l~~l~ 429 (433)
.|++++ +.+..|.+|+|+|++++ .++...|++++||.+.|| + |++++ .+.++++.++++|+
T Consensus 333 ~L~~~~~~~~~~~~~p~gg~f~~~~~~----~~~~~~L~~~~~v~v~p~--------~--Ris~~~~~~~~~~~~~~~l~ 398 (404)
T PTZ00376 333 ELKALGSPGDWEHIINQIGMFSFTGLT----KEQVERLIEKYHIYLLDN--------G--RISVAGLTSKNVDYVAEAIH 398 (404)
T ss_pred HHHhcCCCCcccccccCceEEEecCCC----HHHHHHHHHhCCEeecCC--------C--eEEEeccCHHhHHHHHHHHH
Confidence 999875 44567889999999985 477888888889999986 1 99996 69999999999999
Q ss_pred Hhh
Q 045431 430 HLY 432 (433)
Q Consensus 430 ~~l 432 (433)
+++
T Consensus 399 ~~~ 401 (404)
T PTZ00376 399 DVV 401 (404)
T ss_pred HHH
Confidence 876
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-46 Score=357.37 Aligned_cols=321 Identities=18% Similarity=0.333 Sum_probs=260.3
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR 141 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~ 141 (433)
..++|+|+.|++++++|+.+.+++.+.+.. ...| +..|.++||+++|+|+ ++++++|++|+|+++++.+
T Consensus 28 ~~~~i~l~~nen~~~~~~~v~~a~~~~~~~------~~~Y-p~~g~~~Lr~aia~~~----~~~~~~I~vt~Gs~e~i~~ 96 (366)
T PRK01533 28 DHSFVKLASNENPFGCSPRVLDELQKSWLD------HALY-PDGGATTLRQTIANKL----HVKMEQVLCGSGLDEVIQI 96 (366)
T ss_pred CCceEEeCCCCCCCCCCHHHHHHHHHHHHh------cCcC-CCCCHHHHHHHHHHHh----CCCcceEEECCCHHHHHHH
Confidence 346899999999999999999999887643 1246 6779999999999998 8899999999999999997
Q ss_pred -HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEEEEcCCCCc
Q 045431 142 -LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIFFCSPNNP 217 (433)
Q Consensus 142 -l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~~p~nP 217 (433)
+..++++||+|++++|+|+.|...++..| .+++.++.+. +.++.+ ++. .++++++++||||||
T Consensus 97 ~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g------------~~v~~v~~~~-~~~d~~~l~~~~~~~~~~v~i~~P~NP 163 (366)
T PRK01533 97 ISRAVLKAGDNIVTAGATFPQYRHHAIIEG------------CEVKEVALNN-GVYDLDEISSVVDNDTKIVWICNPNNP 163 (366)
T ss_pred HHHHhcCCCCEEEEcCCcHHHHHHHHHHcC------------CEEEEeecCC-CCcCHHHHHHHhCcCCcEEEEeCCCCC
Confidence 57778999999999999999999999998 4788888753 233222 221 257899999999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccceeeeecccccc
Q 045431 218 TGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELL 296 (433)
Q Consensus 218 tG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~ 296 (433)
||.+++.+++++|+++|++++ ++|+||+|.+|.+.+. +..+..++ ..+++|+++||||+||++|+|+||++++++++
T Consensus 164 TG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~-~~~~vi~~~SfSK~~~l~GlRiG~~i~~~~~~ 241 (366)
T PRK01533 164 TGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLE-KHKNILVLRTFSKAYGLASFRVGYAVGHEELI 241 (366)
T ss_pred CCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhc-cCCCEEEEeCchHHhcChHHHHhHHhCCHHHH
Confidence 999999999999999998876 5677999998876542 22222232 24689999999999999999999999998875
Q ss_pred ccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEEC
Q 045431 297 FSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQF 376 (433)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~ 376 (433)
+.+.+.. ..+..+.++|.++.++|++ ..++++.++.++++++++.+.++.+|+.+.++ .|+|+|+++
T Consensus 242 --------~~l~~~~--~~~~~~~~~q~aa~~~l~~--~~~~~~~~~~~~~~r~~~~~~l~~~g~~~~~~-~~nf~~~~~ 308 (366)
T PRK01533 242 --------EKLNVVR--LPFNVSSLAQKAATIAFGD--DEFIEEIVRVNTEGLRQYESFCKENEIPFYQS-QTNFIFLPV 308 (366)
T ss_pred --------HHHHHhc--CCCCcCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHhCCCccCCC-cCcEEEEeC
Confidence 6666544 2456899999999999974 45677888888999999999998889887765 788999998
Q ss_pred CCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 377 PGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 377 ~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+ +..++...++ ++||.+++ | ++++||++ .+.++.+.++++|++++
T Consensus 309 ~--~~~~~~~~l~-~~GI~Vr~---~----~~~iRis~-~~~~~~~~l~~al~~~~ 353 (366)
T PRK01533 309 E--NGGEIYEACA-HAGFIIRP---F----PNGVRITV-GTREQNEGVISVLQQHF 353 (366)
T ss_pred C--CHHHHHHHHH-HCCcEEcc---C----CCceEEeC-CCHHHHHHHHHHHHHHH
Confidence 6 3556666665 56999997 3 36899997 66788889999888765
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=354.27 Aligned_cols=342 Identities=24% Similarity=0.379 Sum_probs=272.8
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHHHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDIS 140 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~al~ 140 (433)
+++++|+.|.|++++|+.+.+++.+.+.... .....|++..|.+++|+++++++.+ +.++++++|++|+|+++++.
T Consensus 33 ~~~~~l~~g~p~~~~~~~v~~a~~~~~~~~~--~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~ 110 (394)
T PRK06836 33 DNVFDFSLGNPSVPPPAAVKEALRELAEEED--PGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALN 110 (394)
T ss_pred CCeEEecCcCCCCCCCHHHHHHHHHHHhcCC--cCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHHH
Confidence 4689999999888888899998888775432 3356898899999999999999975 66788999999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCC---C--CCCccEEEEcCC
Q 045431 141 R-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS---T--VARTDIIFFCSP 214 (433)
Q Consensus 141 ~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~i~l~~p 214 (433)
+ +..++++||.|++++|+|..+...++..| .+++.++.+++ .+..+++ + .++++++++++|
T Consensus 111 ~~~~~l~~~gd~Vli~~p~~~~~~~~~~~~g------------~~v~~v~~~~~-~~~~d~~~l~~~~~~~~~~v~~~~p 177 (394)
T PRK06836 111 VALKAILNPGDEVIVFAPYFVEYRFYVDNHG------------GKLVVVPTDTD-TFQPDLDALEAAITPKTKAVIINSP 177 (394)
T ss_pred HHHHHhcCCCCEEEEcCCCCccHHHHHHHcC------------CEEEEEecCCc-cCcCCHHHHHhhcCcCceEEEEeCC
Confidence 7 57788999999999999999998888888 48888888654 1223322 2 357899999999
Q ss_pred CCccccCCCHHHHHHHHHHHHH------cCCEEEEeccccccccCCC-CCcccccCCCCcceEEEeccccccccccccee
Q 045431 215 NNPTGAAATREQLTRLVQFAKD------NGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLG 287 (433)
Q Consensus 215 ~nPtG~~~~~~~~~~i~~~a~~------~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G 287 (433)
|||||.++|.+++++|+++|++ |+++||+||+|.++.+++. ..++... .+++++++||||.+|+||+|+|
T Consensus 178 ~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~---~~~~i~~~S~SK~~~~pGlRiG 254 (394)
T PRK06836 178 NNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKY---YDNSIVVYSFSKSLSLPGERIG 254 (394)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHHc---cCcEEEEecchhhccCcceeeE
Confidence 9999999999999999999999 8999999999999887653 2333222 4579999999999999999999
Q ss_pred eeeccccccccCCcchhHHHHHHHh-hccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecC
Q 045431 288 WTVIPKELLFSDGFPVAKDFNRIVC-TCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGG 366 (433)
Q Consensus 288 ~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ 366 (433)
|+++++.+.. ...+...+..... ......+.+.|.++..++++. ..++.++++++.+.+.|+++|+.+..+
T Consensus 255 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~------~~~~~~~~~r~~l~~~L~~~g~~~~~~ 326 (394)
T PRK06836 255 YIAVNPEMED--ADDLVAALVFANRILGFVNAPALMQRVVAKCLDAT------VDVSIYKRNRDLLYDGLTELGFECVKP 326 (394)
T ss_pred EEecCHHHhh--hHHHHHHHHHHhhccccccCCHHHHHHHHHHhCCh------HHHHHHHHHHHHHHHHHHhCCCEeecC
Confidence 9999877631 0001111111111 112346788999888888752 125678889999999999999988888
Q ss_pred CCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 367 KNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 367 ~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
.+|+|+|++++..+..++...+ .++||.+.||..|+. .+++||+++.+++++++++++|+++++
T Consensus 327 ~gg~~~~~~~~~~~~~~~~~~l-~~~gv~v~~g~~f~~--~~~iRi~~~~~~~~~~~~i~~l~~~l~ 390 (394)
T PRK06836 327 QGAFYLFPKSPEEDDVAFCEKA-KKHNLLLVPGSGFGC--PGYFRLSYCVDTETIERSLPAFEKLAK 390 (394)
T ss_pred CceEEEEEeCCCCCHHHHHHHH-HhCCEEEECchhcCC--CCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence 8999999999865666776554 566999999999864 579999998899999999999998863
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-46 Score=360.67 Aligned_cols=336 Identities=18% Similarity=0.221 Sum_probs=256.1
Q ss_pred CceEEecCCCC---CCCCh--HHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc-c-CCCCCCcE--EEcC
Q 045431 63 AEVISLGIGDT---TEPIP--EVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK-D-LGIEEGDI--FVSD 133 (433)
Q Consensus 63 ~~~i~l~~g~~---~~~~~--~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~-~-~~~~~~~i--~~~~ 133 (433)
+++|+|+.|.| +..+| +.+.+++.+.+.. .....|++..|.++||+++++|+.+ + ..+++++| ++|+
T Consensus 26 ~~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~----~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~ 101 (396)
T PRK09257 26 PDKVNLGVGVYKDEQGRTPVLRAVKKAEARLLET----ETTKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTP 101 (396)
T ss_pred cCcEecceeeEECCCCCEeccHHHHHHHHHhccc----ccCCCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEecC
Confidence 36899999963 33344 6777777776542 2345799999999999999999975 2 23478887 9999
Q ss_pred ChHHHHHHH-HHh--cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCC---C----C
Q 045431 134 GAKCDISRL-QIV--FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS---T----V 203 (433)
Q Consensus 134 G~~~al~~l-~~l--~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~ 203 (433)
|+++++.++ ..+ ++|||+|++++|+|+.+...++..| .+++.++..+++++..+++ . .
T Consensus 102 Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~g------------~~~v~v~~~~~~~~~~d~~~l~~~~~~~ 169 (396)
T PRK09257 102 GGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAG------------LEVKTYPYYDAATKGLDFDAMLADLSQA 169 (396)
T ss_pred CccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHcC------------CcEEEEeccccccCccCHHHHHHHHHhC
Confidence 999999975 333 5899999999999999999999999 4788888732222233322 1 1
Q ss_pred -CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccC-CC-CCcccccCCCCcceEEEeccccccc
Q 045431 204 -ARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISD-DN-PRSIFEIPGAKEVAIETSSFSKYAG 280 (433)
Q Consensus 204 -~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~-~~-~~~~~~~~~~~~~vi~i~S~sK~~~ 280 (433)
.+..++++++||||||.++|.+++++|+++|++|+++||+||+|.++.++ +. ..++.+++...+++|+++||||+++
T Consensus 170 ~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~ 249 (396)
T PRK09257 170 PAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFG 249 (396)
T ss_pred CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCc
Confidence 22344455799999999999999999999999999999999999998764 22 3445455443568999999999999
Q ss_pred ccccceeeeec--c-ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCC-----hhHHHHHHHHHHHHHHHH
Q 045431 281 FTGVRLGWTVI--P-KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEG-----FKAVHEVIGFYKENTDII 352 (433)
Q Consensus 281 ~~G~r~G~l~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~l 352 (433)
++|+|+||+++ + ++.+. ++...+..........++.+.|.++.+++.+.. .++++++++.++++++.+
T Consensus 250 ~~GlRiG~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~l 325 (396)
T PRK09257 250 LYGERVGALSVVAEDAEEAD----RVLSQLKATIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLL 325 (396)
T ss_pred cccccceeEEEEeCCHHHHH----HHHHHHHHHhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999984 2 23220 011333333333445568899999999998643 257888999999999999
Q ss_pred HHHHhhcC----CeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec-cChhHHHHHHHH
Q 045431 353 VETFNSLG----FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF-GHRGNVLEACKR 427 (433)
Q Consensus 353 ~~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~-~~~~~l~~~l~~ 427 (433)
.+.|++++ +.+..|++|+|+|++++ .+++.++++++||.+.|. + ||+++ .+++++++++++
T Consensus 326 ~~~L~~~~~~~~~~~~~p~gg~~~w~~l~----~~~~~~l~~~~~V~~~p~--------~--ri~~~~~~~~~i~~~~~~ 391 (396)
T PRK09257 326 VEALKAKGPSRDFDFIARQRGMFSYSGLT----PEQVDRLREEFGVYAVGS--------G--RINVAGLNESNIDYVAEA 391 (396)
T ss_pred HHHHHhcCCCCCcccccccceEEEecCCC----HHHHHHHHHcCCEEEcCC--------C--eEEEeeCCHHHHHHHHHH
Confidence 99999874 56777899999999985 356677888889999762 2 99996 699999999999
Q ss_pred HHHhh
Q 045431 428 FKHLY 432 (433)
Q Consensus 428 l~~~l 432 (433)
|++++
T Consensus 392 i~~~~ 396 (396)
T PRK09257 392 IAAVL 396 (396)
T ss_pred HHhhC
Confidence 99864
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=377.48 Aligned_cols=378 Identities=13% Similarity=0.181 Sum_probs=285.4
Q ss_pred cccccCCChhhHHHHHhccccccccccCCCCCCcHHHHHHHHHHHhcCCCCceEEecCCCCCCCChHHHHHHHHHHHhhc
Q 045431 13 VCKCVAAPQEEKIAYKTKVSRNGNLGKLQAGYLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYAL 92 (433)
Q Consensus 13 l~~g~~LPs~r~la~~~~vs~~t~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~ 92 (433)
-++-.++|-.++.++..++|.++ .+.+.+ ........++.++|+|+.|+|++++|+.+.+++.+++.+.
T Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~----------~~~~~~~~~g~~vI~LsinE~d~ppPp~V~eAi~eal~~~ 726 (1082)
T PLN02672 658 HTPQERLPEEEESSKFIGFSSSA-RSALKE----------AELSVSGSQESSLIHMDVDESFLPVPSAVKASIFESFVRQ 726 (1082)
T ss_pred CCCccccchhhhhHhhhCCCchh-HHHHHh----------cccCCcccCCCCEEEEeCCCCCCCCCHHHHHHHHHHHhhc
Confidence 34566777777778777777544 111111 0000111234579999999999999999999999877532
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCC-CcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHH
Q 045431 93 STQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEE-GDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVI 168 (433)
Q Consensus 93 ~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~-~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~ 168 (433)
++ ..|.+++|+++++|+.+ ++..++ ++|++|+|+++++.+ +..+++|||.|++++|+|+.|...++.
T Consensus 727 -------~~--s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~lll~aLl~pGD~VLVp~PtY~~Y~~~a~~ 797 (1082)
T PLN02672 727 -------NI--SESETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNKLVLCCVQEGGTLCFPAGSNGTYVSAAKF 797 (1082)
T ss_pred -------CC--CCCChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHH
Confidence 11 23678899999999986 444433 589999999999986 588899999999999999999999999
Q ss_pred hCCcccccccccccceEEEeecCccCCcccCCCC----C-C-CccEEEEcCCC-CccccCCCHHHHHHHHHHHHHcCCEE
Q 045431 169 MGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST----V-A-RTDIIFFCSPN-NPTGAAATREQLTRLVQFAKDNGSII 241 (433)
Q Consensus 169 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~-~~~~i~l~~p~-nPtG~~~~~~~~~~i~~~a~~~~~~l 241 (433)
.| .+++.++.+.++++..+.+. . . +.++|+++||| ||||.+++.+++++|+++|++||++|
T Consensus 798 ~G------------a~vv~Vpl~~e~gf~lD~d~Le~al~~~~~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~V 865 (1082)
T PLN02672 798 LK------------ANFRRIPTKSSDGFKLTAKTLASTLETVKKPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARV 865 (1082)
T ss_pred cC------------CEEEEEecccccCCCCCHHHHHHHhccCCCCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEE
Confidence 99 48889998766677665322 1 2 34578999996 99999999999999999999999999
Q ss_pred EEeccccccccCCCCC---ccc----ccCCC--CcceEEEecccccccccccceeeeecccc-ccccCCcchhHHHHHHH
Q 045431 242 VYDSAYALYISDDNPR---SIF----EIPGA--KEVAIETSSFSKYAGFTGVRLGWTVIPKE-LLFSDGFPVAKDFNRIV 311 (433)
Q Consensus 242 i~De~~~~~~~~~~~~---~~~----~~~~~--~~~vi~i~S~sK~~~~~G~r~G~l~~~~~-~~~~~~~~~~~~~~~~~ 311 (433)
|+||+|+++.+++.+. ++. .++.. ..+|++++||||.++++|+|+||++++++ ++ +.+....
T Consensus 866 IsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGLRIGylIap~~eLi--------~~l~~~~ 937 (1082)
T PLN02672 866 IIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGGHEFGFLALNDSVLI--------DAFHSAP 937 (1082)
T ss_pred EEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhccHHHHheeEEeCCHHHH--------HHHHHhh
Confidence 9999999888865321 111 12211 23799999999999999999999999766 53 5555433
Q ss_pred hhccC-CCcHHHHHHHHHhcC--cCCh-hHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECC----------
Q 045431 312 CTCFN-GASNISQAGGLACLS--PEGF-KAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFP---------- 377 (433)
Q Consensus 312 ~~~~~-~~~~~~q~~~~~~l~--~~~~-~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~---------- 377 (433)
..... ..+..++.++.+++. +..+ .++++.++.++++++++.+.|+++|+.+.+|.+|+|+|++++
T Consensus 938 ~~s~~~~~~q~Aaaaalall~~~~~~~~~~l~e~r~~Lk~rRd~L~e~L~~~Gi~v~~PeGGFfLwl~l~~~l~~~~~~~ 1017 (1082)
T PLN02672 938 GLSRPHSTLKYTIKKLLGLKNQKSSDLLDGVAEQKKILKSRAERLKETLEACGWDVLEPQGGISMVAKPSAYLGKTVKLK 1017 (1082)
T ss_pred hhcCCCcHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHCCCeEecCCcEEEEEEEcccccccccccc
Confidence 22221 122333333334342 2222 567888899999999999999999999999999999999763
Q ss_pred --------CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 378 --------GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 378 --------~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+.++.++...+++++||.+.||..|+. ++++||+++.+++++++++++|++++
T Consensus 1018 ~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~--~g~~RIsfa~~~e~LeeALerL~kf~ 1078 (1082)
T PLN02672 1018 SIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGI--PGYCRFSFALEDSEFDRALKAIARFK 1078 (1082)
T ss_pred ccccccccCCCHHHHHHHHHHcCCEEEecCcccCC--CCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 125677888888888999999988764 67999999889999999999999865
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=358.56 Aligned_cols=342 Identities=19% Similarity=0.280 Sum_probs=258.9
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHH-HHhcc--CC-CCCC--cEEEcCChHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIAS-TFYKD--LG-IEEG--DIFVSDGAKC 137 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~-~l~~~--~~-~~~~--~i~~~~G~~~ 137 (433)
++|+++.|+|++++++.+ .++.+.+.. . +|+++.|..++++++++ |+.+. .. .+++ +|++|+|+++
T Consensus 95 ~~i~l~~g~p~~~~~~~~-~~~~~~~~~----~---~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~ 166 (521)
T TIGR03801 95 DIISYVIDQLGFDPDAFL-YEMCDGIIG----D---NYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTA 166 (521)
T ss_pred HHHhhcCCCCCCCCCHHH-HHHHHHhhc----C---CCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHH
Confidence 479999999999866554 555555421 1 58778888888888885 55542 22 2344 8999999999
Q ss_pred HHHH-HHH-----hcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCC-----cccCCC---C-
Q 045431 138 DISR-LQI-----VFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENG-----FFPDLS---T- 202 (433)
Q Consensus 138 al~~-l~~-----l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~---~- 202 (433)
++.. +.+ ++.|||+|++++|+|+.|...+...+.. ..++.++.+.+++ |..+.+ +
T Consensus 167 al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~~g----------~~vv~i~~~~~~~~g~~~~~~d~~~l~~~ 236 (521)
T TIGR03801 167 AMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELPRYD----------FEVVRIKADEMTEDGTHTWQYPDKELEKL 236 (521)
T ss_pred HHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhcCC----------cEEEEeecccccccccccCCCCHHHHHHh
Confidence 9987 444 6899999999999999999988876421 3566666654322 444322 2
Q ss_pred -CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHc--CCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccc
Q 045431 203 -VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDN--GSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYA 279 (433)
Q Consensus 203 -~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~--~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~ 279 (433)
.+++|+|+++|||||||.++|.+++++|+++|++| +++||+||+|.+|.+ .+.++.+. .++++|+++||||.|
T Consensus 237 ~~~~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~--~~~sl~~~--~~~~vI~v~SfSK~f 312 (521)
T TIGR03801 237 RDPSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVD--DFRSLFAE--LPYNTIGVYSFSKYF 312 (521)
T ss_pred cCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcc--cccchhhh--CCCCEEEEEcchhhc
Confidence 36899999999999999999999999999999987 899999999998875 24455444 356899999999999
Q ss_pred cccccceeeeecccccccc-----C------------------------CcchhHHHHHHHhhccCCCcHHHHH-----H
Q 045431 280 GFTGVRLGWTVIPKELLFS-----D------------------------GFPVAKDFNRIVCTCFNGASNISQA-----G 325 (433)
Q Consensus 280 ~~~G~r~G~l~~~~~~~~~-----~------------------------~~~~~~~~~~~~~~~~~~~~~~~q~-----~ 325 (433)
|++|||+||++++++.+.+ - ..++.++.+.+......+.+.+.|. +
T Consensus 313 g~~G~RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~al~a 392 (521)
T TIGR03801 313 GATGWRLGTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFS 392 (521)
T ss_pred cCchhhhhhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHH
Confidence 9999999999998762210 0 0111223344455555667788776 3
Q ss_pred HHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCe--eecCCCccEEEEECCCC-----------------ChHHHHH
Q 045431 326 GLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFK--VYGGKNAPYVWVQFPGR-----------------SSWDVFS 386 (433)
Q Consensus 326 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~--~~~~~~g~~~~~~~~~~-----------------~~~~~~~ 386 (433)
+.++++ ....+.+.+++.+++|++.+.+.| |+. ..++.+++|+|++++.. ++.+++.
T Consensus 393 ~~all~-~~~~y~~~~~~~~~~R~~~l~~~L---g~~~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~~~~~~~~~~ 468 (521)
T TIGR03801 393 LFALMD-KENAYKAETKDICRRREKLLFRGL---GLPLQEDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKKNYSPVDVLF 468 (521)
T ss_pred HHHHhc-cchhHHHHHHHHHHHHHHHHHHhc---CCCCcCCCCCeEEEEEeehHHHHHHhcchHHHHHHhccCCHHHHHH
Confidence 444554 344678999999999999999988 444 34578899999999731 4678899
Q ss_pred HHHHcCCeEecCCCCCCCCCCCeEEEeecc-ChhHHHHHHHHHHHhh
Q 045431 387 EILEKTHVVTTPGSGFGPGGEGFIRVSAFG-HRGNVLEACKRFKHLY 432 (433)
Q Consensus 387 ~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~l~~~l~~l~~~l 432 (433)
+|++++||.+.||..|+.. ++++|+|+++ ++++++++.++|++++
T Consensus 469 ~L~~e~gV~v~PG~~Fg~~-~~~vRisla~l~~~~~~~~~~rl~~~~ 514 (521)
T TIGR03801 469 RLAEETGIVLLPGGGFGGP-EWSVRVSLANLNEYDYAEIGRAIRKIL 514 (521)
T ss_pred HHHHhCCEEEeCchhcCCC-CCeEEEEecCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999853 5789999974 8899999999999875
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-45 Score=347.69 Aligned_cols=326 Identities=19% Similarity=0.289 Sum_probs=259.7
Q ss_pred CCCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHH
Q 045431 60 YPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDI 139 (433)
Q Consensus 60 ~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al 139 (433)
+.+.+++||+.+++++++|+.+.+++.+.+.. ...|++..|.++||+++++|+ ++++++|++|+|+++++
T Consensus 19 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~Y~~~~g~~~lr~aia~~~----~~~~~~I~it~Ga~~al 88 (349)
T PRK07908 19 DAGPGLLDFAVNVRHDTPPEWLRERLAARLGD------LAAYPSTEDERRARAAVAARH----GRTPDEVLLLAGAAEGF 88 (349)
T ss_pred cCCCCeEEecCCCCCCCCCHHHHHHHHHHhhH------hhcCCCccchHHHHHHHHHHh----CcChhhEEECCCHHHHH
Confidence 33567999999999999999999999997743 356877889999999999998 78999999999999999
Q ss_pred HHHHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-CCCccEEEEcCCCCcc
Q 045431 140 SRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-VARTDIIFFCSPNNPT 218 (433)
Q Consensus 140 ~~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~l~~p~nPt 218 (433)
.++.. +++| .++++.|+|..+...++..| .+++.++.+.+.+ .+.+. .+++++++++||||||
T Consensus 89 ~~~~~-l~~~-~viv~~P~y~~~~~~~~~~G------------~~i~~v~~~~~~~--~d~~~l~~~~~~i~l~np~NPT 152 (349)
T PRK07908 89 ALLAR-LRPR-RAAVVHPSFTEPEAALRAAG------------IPVHRVVLDPPFR--LDPAAVPDDADLVVIGNPTNPT 152 (349)
T ss_pred HHHHh-cCCC-eEEEeCCCChHHHHHHHHcC------------CEEEeeccCcccC--cChhHhccCCCEEEEcCCCCCC
Confidence 98655 6775 67778999999998888888 4788888865423 23222 2578899999999999
Q ss_pred ccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecccccccc
Q 045431 219 GAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFS 298 (433)
Q Consensus 219 G~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~ 298 (433)
|.++|.+++ .++|+ ++.++|+||+|+++.. +.+.++.+.+ .+++++++||||++|++|+|+||++++++++
T Consensus 153 G~~~~~~~l---~~l~~-~~~~iIvDe~y~~~~~-~~~~~l~~~~--~~~~i~i~S~SK~~~l~GlRiG~~~~~~~~~-- 223 (349)
T PRK07908 153 SVLHPAEQL---LALRR-PGRILVVDEAFADAVP-GEPESLAGDD--LPGVLVLRSLTKTWSLAGLRVGYALGAPDVL-- 223 (349)
T ss_pred CCCcCHHHH---HHHHh-cCCEEEEECcchhhcc-CCcccccccc--CCCEEEEeecccccCCccceeeeeecCHHHH--
Confidence 999997655 45555 4788999999998754 3344554432 3579999999999999999999999998875
Q ss_pred CCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCC
Q 045431 299 DGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPG 378 (433)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~ 378 (433)
+.+..... .+..+.+.|.++.+++.....+++++.+++++++++.+.+.|+++|+.+..|.+|+|+|+++++
T Consensus 224 ------~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~g~~~~~~~~~ 295 (349)
T PRK07908 224 ------ARLTRGRA--HWPVGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRAVGARVVDPAAAPFVLVRVPD 295 (349)
T ss_pred ------HHHHhcCC--CCCccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhCCcEeccCCCceEEEEECCc
Confidence 55554332 2446777888777777744457888999999999999999999888888888899999999984
Q ss_pred CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 379 RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 379 ~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
. +.+..+++++||.+.||..|+..++++|||++ .++++++++++.|++++
T Consensus 296 --~-~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~-~~~~~~~~l~~al~~~~ 345 (349)
T PRK07908 296 --A-ELLRKRLRERGIAVRRGDTFPGLDPDYLRLAV-RPRAEVPVLVQALAEIL 345 (349)
T ss_pred --H-HHHHHHHHhCCEEEEECCCCCCCCCCeEEEEe-CCCccHHHHHHHHHHHH
Confidence 3 34445556779999999998654578999999 56778888888887765
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=349.05 Aligned_cols=315 Identities=15% Similarity=0.258 Sum_probs=246.7
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQ 143 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l~ 143 (433)
.+|+|+.++++++.. .....| |..-..+||+++|+|+ ++++++|++|+|+++++.++.
T Consensus 17 ~~i~l~~Nenp~~~~-----------------~~~~~Y-p~~~~~~lr~~ia~~~----~~~~~~I~it~Gs~~~l~~~~ 74 (332)
T PRK06425 17 RIIDFSANINDFMDI-----------------GDISIY-PEISYTDIEDQIKIYT----QGLKIKVLIGPGLTHFIYRLL 74 (332)
T ss_pred CEEEeccccCCCcCh-----------------hhcccC-cCcCHHHHHHHHHHHh----CCCcceEEECCCHHHHHHHHH
Confidence 589999999876310 223457 4556899999999998 889999999999999999865
Q ss_pred HhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCC
Q 045431 144 IVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAAT 223 (433)
Q Consensus 144 ~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~ 223 (433)
.++++| .|++++|+|+.|...++..| .+++.+|.+.. +.+.+..+..+++++++||||||||.++|
T Consensus 75 ~~~~~~-~vv~~~P~y~~y~~~~~~~G------------~~v~~vp~~~~-~~~~~~l~~~~~k~v~l~nP~NPTG~~~s 140 (332)
T PRK06425 75 SYINVG-NIIIVEPNFNEYKGYAFTHG------------IRISALPFNLI-NNNPEILNNYNFDLIFIVSPDNPLGNLIS 140 (332)
T ss_pred HHhCCC-cEEEeCCChHHHHHHHHHcC------------CeEEEEeCCcc-cCcHHHHhhcCCCEEEEeCCCCCcCCccC
Confidence 567887 47777999999999999999 47888888642 22222222348899999999999999999
Q ss_pred HHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcch
Q 045431 224 REQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPV 303 (433)
Q Consensus 224 ~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~ 303 (433)
.+++++|+++|++|+++||+||+|.+|.+++. .+...+....+++|+++||||++|+||+|+||++++++++
T Consensus 141 ~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~-~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v~~~~li------- 212 (332)
T PRK06425 141 RDSLLTISEICRKKGALLFIDEAFIDFVPNRA-EEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIATDDYNM------- 212 (332)
T ss_pred HHHHHHHHHHHHHcCCEEEEecchhccccccc-hhHHHHhccCCCEEEEeecHHhcCCchhhheeeecCHHHH-------
Confidence 99999999999999999999999999876542 2333333334689999999999999999999999998885
Q ss_pred hHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-hHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCCCChH
Q 045431 304 AKDFNRIVCTCFNGASNISQAGGLACLSPEGF-KAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSW 382 (433)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~ 382 (433)
+.+.+... .+..+.+++. ++..... .++++.++.++++++.+.+.|+++|+.+..+.+|+|+|++++ ++.
T Consensus 213 -~~l~~~~~--~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~g~f~~~~~~--~~~ 283 (332)
T PRK06425 213 -KISRKITE--PWSVCDPAID----FIRSIDLDYVAKHSLDIMENERSYLINNLEAMGFRAAGDPSANFITFMIP--DAH 283 (332)
T ss_pred -HHHHHcCC--CCccCHHHHH----HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCceEEEEEcC--CHH
Confidence 55554322 2223333332 2322222 466788999999999999999999988765568899999987 567
Q ss_pred HHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 383 DVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 383 ~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
++.+.+++ +||.++||..|+..+++++||++. +.++.+.++++|++++.
T Consensus 284 ~~~~~l~~-~gi~v~~~~~f~~~~~~~iRis~~-~~~~~~~l~~al~~~~~ 332 (332)
T PRK06425 284 DFYSYLLK-NGILVRLLDDYECLGEQYIRIAIR-RRSFNIKLVNALRNFLN 332 (332)
T ss_pred HHHHHHHH-CCeEEEECCCCCCCCCCEEEEEeC-CHHHHHHHHHHHHHHhC
Confidence 77777776 499999999997555689999984 57799999999988763
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-45 Score=349.74 Aligned_cols=324 Identities=17% Similarity=0.237 Sum_probs=253.9
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc----cCCCCCCcEEEcCChHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK----DLGIEEGDIFVSDGAKCDI 139 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~----~~~~~~~~i~~~~G~~~al 139 (433)
.+++|+.|+|++++|+.+.+++.+++... .....| +..|.++||++||+|+.+ ++.+++++|++|+|+++++
T Consensus 29 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Y-~~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al 104 (374)
T PRK02610 29 QLDRLDTNEFPYDLPPDLKQKLAWLYQQG---IESNRY-PDGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELI 104 (374)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhhc---ccccCC-CCCchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHH
Confidence 48999999999999999999999876531 123468 457999999999999975 3458899999999999999
Q ss_pred HH-HHHhcCCCC-EEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC------C---CCccE
Q 045431 140 SR-LQIVFGSNV-TMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST------V---ARTDI 208 (433)
Q Consensus 140 ~~-l~~l~~~gd-~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~ 208 (433)
.. +..++.+|| .|++++|+|+.+...++..| .+++.++.+.+ ++..+++. . .++++
T Consensus 105 ~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g------------~~~~~~~~~~~-~~~~d~~~l~~~~~~~~~~~~k~ 171 (374)
T PRK02610 105 RSLLIATCLGGEGSILVAEPTFSMYGILAQTLG------------IPVVRVGRDPE-TFEIDLAAAQSAIEQTQNPPVRV 171 (374)
T ss_pred HHHHHHHcCCCCCeEEEcCCChHHHHHHHHHcC------------CEEEEecCCcc-cCCCCHHHHHHHHHhhcCCCceE
Confidence 86 567777886 89999999999999999999 47888887542 23333221 1 47899
Q ss_pred EEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceee
Q 045431 209 IFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGW 288 (433)
Q Consensus 209 i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~ 288 (433)
|++||||||||.+++.+++++|++++ ++++||+||+|.+|.+.. .+..+.. .+++|+++||||++|+||+|+||
T Consensus 172 i~l~~P~NPTG~~~s~~~l~~l~~~~--~~~~iI~De~Y~~~~~~~---~~~~~~~-~~~~ivi~SfSK~~g~~GlRiG~ 245 (374)
T PRK02610 172 VFVVHPNSPTGNPLTAAELEWLRSLP--EDILVVIDEAYFEFSQTT---LVGELAQ-HPNWVILRTFSKAFRLAAHRVGY 245 (374)
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHhcc--CCcEEEEeccccccCccc---hHHHHhc-CCCEEEEEecchhccCcccceee
Confidence 99999999999999999999999976 499999999999886432 1222322 35688999999999999999999
Q ss_pred eeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCC
Q 045431 289 TVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGK 367 (433)
Q Consensus 289 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~ 367 (433)
++++++++ +.+.+.. .....+.++|.++..++++. ..+.+.+++.+++ ++.+.+.|+++ ++.+. |+
T Consensus 246 ~v~~~~l~--------~~l~~~~--~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~-r~~l~~~L~~~~~~~~~-p~ 312 (374)
T PRK02610 246 AIGHPELI--------AVLEKVR--LPYNLPSFSQLAAQLALEHR-QELLAAIPEILQE-RDRLYQALQELPQLRVW-PS 312 (374)
T ss_pred eecCHHHH--------HHHHHhc--CCCCCCHHHHHHHHHHhcCH-HHHHHHHHHHHHH-HHHHHHHHHhCCCcEeC-CC
Confidence 99998875 5665544 23457889999998888743 3456666655554 67788889877 66654 67
Q ss_pred CccEEEEECCC-CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 368 NAPYVWVQFPG-RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 368 ~g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+|+|+|++++. .++.++...+ .++||.+.++ .+++||++.. .+++++++++|++++
T Consensus 313 ~g~f~~~~l~~~~~~~~~~~~l-~~~gi~v~~~-------~~~lRls~~~-~~~~~~~l~~l~~~l 369 (374)
T PRK02610 313 AANFLYLRLSQDAALAALHQAL-KAQGTLVRHT-------GGGLRITIGT-PEENQRTLERLQAAL 369 (374)
T ss_pred cceEEEEeCCCCCCHHHHHHHH-HHCCEEEEeC-------CCeEEEeCCC-HHHHHHHHHHHHHHH
Confidence 89999999984 3556666665 5569999753 4689999864 567899999999876
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=344.79 Aligned_cols=328 Identities=15% Similarity=0.230 Sum_probs=261.2
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR 141 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~ 141 (433)
+.++|+|+.|++++++|+.+.+++.+.+.. ...|++ .+..+||+++|+++ ++++++|++|+|+++++.+
T Consensus 19 ~~~~i~l~~~~~~~~~p~~~~~a~~~~~~~------~~~y~~-~~~~~lr~~ia~~~----~~~~~~i~it~Ga~~~l~~ 87 (356)
T PRK08056 19 PDQLLDFSANINPLGMPVSLKRAIIDNLDC------AERYPD-VEYRHLHQALARHH----QVPASWILAGNGETESIFA 87 (356)
T ss_pred hhhEEEeccccCCCCCCHHHHHHHHHHHHh------cccCcC-ccHHHHHHHHHHHh----CcChhhEEECCCHHHHHHH
Confidence 346899999999999999999999887653 235754 57899999999998 7899999999999999998
Q ss_pred HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCC--C--CCCccEEEEcCCCCc
Q 045431 142 LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS--T--VARTDIIFFCSPNNP 217 (433)
Q Consensus 142 l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~i~l~~p~nP 217 (433)
+...+.+|+ +++++|+|..+...++..| .+++.++.+.++++..+.+ + .+++++++++|||||
T Consensus 88 ~~~~l~~g~-viv~~P~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~k~v~l~~p~NP 154 (356)
T PRK08056 88 VVSGLKPRR-AMIVTPGFAEYRRALQQVG------------CEIRRYSLREADGWQLTDAILEALTPDLDCLFLCTPNNP 154 (356)
T ss_pred HHHHhCCCC-EEEeCCCcHHHHHHHHHcC------------CeEEEEecccccCCCccHHHHHhccCCCCEEEEeCCcCC
Confidence 644457776 7778999999999999988 4788888865555544411 1 368899999999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccceeeeeccc-cc
Q 045431 218 TGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPK-EL 295 (433)
Q Consensus 218 tG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~-~~ 295 (433)
||.+++.+++++|+++|++++++||+||+|.++.+++. ..+. +.. .+++++++||||++|++|+|+||+++++ .+
T Consensus 155 TG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~--~~~-~~~~i~~~S~SK~~~~~G~RiG~~v~~~~~~ 231 (356)
T PRK08056 155 TGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQ--LAD-NPHLWVLRSLTKFYAIPGLRLGYLVNSDDAA 231 (356)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHH--hcc-CCCEEEEEechhhccCcchhheeeecCCHHH
Confidence 99999999999999999999999999999999876542 2222 222 3578999999999999999999999864 44
Q ss_pred cccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCCccEEEE
Q 045431 296 LFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAPYVWV 374 (433)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~~ 374 (433)
+ +.+... .....++.++|.++..++++ ..+.++.++.++++++.+.+.|+++ ++.+.+ .+|+|+|+
T Consensus 232 ~--------~~l~~~--~~~~~~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~-~~~~~~~~ 298 (356)
T PRK08056 232 V--------ARMRRQ--QMPWSINAFAALAGEVILQD--RAYQQATWQWLAEEGARFYQALCALPLLTVWP-GRANYLFL 298 (356)
T ss_pred H--------HHHHHh--CCCCchhHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcC-CCCcEEEE
Confidence 3 445432 23345778899988888863 3567888899999999999999887 777655 47899999
Q ss_pred ECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 375 QFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 375 ~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+++. +..++...+++ +||.+++|..|...+.++|||++. +.++.+.+++.|++++
T Consensus 299 ~~~~-~~~~~~~~l~~-~gI~v~~~~~f~~~~~~~iRis~~-~~~~~~~l~~~l~~~~ 353 (356)
T PRK08056 299 RCER-PDIDLQRALLT-QRILIRSCANYPGLDSRYYRVAIR-SAAENERLLAALRNVL 353 (356)
T ss_pred EcCC-ChHHHHHHHHH-CCeEEEECCCCCCCCCCEEEEEEc-CHHHHHHHHHHHHHHH
Confidence 9974 35567777665 599999999996555679999984 5677778888877765
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-45 Score=349.50 Aligned_cols=325 Identities=18% Similarity=0.331 Sum_probs=263.5
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-H
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-L 142 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l 142 (433)
++|+|+.|++++++++.+.+++.+.+.. ..|.+..|.++||+++|+++ ++++++|++|+|+++++.+ +
T Consensus 30 ~~i~l~~n~~~~~~~~~v~~a~~~~~~~-------~~~~p~~g~~~lr~~ia~~~----~~~~~~i~~t~G~~~~l~~~~ 98 (359)
T PRK03158 30 KIVKLASNENPYGPSPKVKEAIAAHLDE-------LALYPDGYAPELRTKVAKHL----GVDEEQLLFGAGLDEVIQMIS 98 (359)
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHHHH-------hhcCCCCcHHHHHHHHHHHh----CCCHHHEEECCCHHHHHHHHH
Confidence 6899999999888888899998887642 24557789999999999998 7889999999999999987 4
Q ss_pred HHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEEEEcCCCCccc
Q 045431 143 QIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIFFCSPNNPTG 219 (433)
Q Consensus 143 ~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~~p~nPtG 219 (433)
..++++||.|++++|+|+.+...+...| .++..++.+ +...+.+ +++ .+++++++++|||||||
T Consensus 99 ~~~~~~gd~v~~~~p~y~~~~~~~~~~g------------~~~~~~~~~-~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG 165 (359)
T PRK03158 99 RALLNPGTNTVMAEPTFSQYRHNAIIEG------------AEVREVPLK-DGGHDLEAMLKAIDEQTKIVWICNPNNPTG 165 (359)
T ss_pred HHHhCCCCEEEEcCCCHHHHHHHHHHcC------------CeEEEEecC-CCCcCHHHHHHhcCCCCCEEEEeCCCCCCC
Confidence 6788999999999999999998888888 477788876 2232221 211 25789999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccceeeeecccccccc
Q 045431 220 AAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFS 298 (433)
Q Consensus 220 ~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~ 298 (433)
.+++.+++.++++.|+ ++++||+||+|.++.+++. +..+...+ ..+++++++||||.+|++|+|+||++++++++
T Consensus 166 ~~~~~~~l~~~~~~~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~-- 241 (359)
T PRK03158 166 TYVNHEELLSFLESVP-SHVLVVLDEAYYEYVTAEDYPDTLPLLE-KYENLIVLRTFSKAYGLAALRVGYGIASEELI-- 241 (359)
T ss_pred CCCCHHHHHHHHHhCC-CCcEEEEECchHhhcCCcccccHHHHHH-hcCCEEEEEechHhhcCcchhhehhcCCHHHH--
Confidence 9999999999888774 6999999999999877643 22222232 24689999999999999999999999998885
Q ss_pred CCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCC
Q 045431 299 DGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPG 378 (433)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~ 378 (433)
+.+.+... ...++.++|.++.+++++ ..++++.++.++++++.+.+.|+++|+.+.+ .+|+|+|++++
T Consensus 242 ------~~~~~~~~--~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~g~~i~~~~~- 309 (359)
T PRK03158 242 ------EKLNIARP--PFNTTRIAQYAAIAALED--QAFLKECVEKNAEGLEQYYAFCKEYGLFYYP-SQTNFIFVDTG- 309 (359)
T ss_pred ------HHHHHhcC--CCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCCCeeCC-CcCcEEEEECC-
Confidence 56655432 345899999999999974 3567788888999999999999988887765 57899999985
Q ss_pred CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 379 RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 379 ~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
.++.++...+++ +||.+.||..|+. ++++||++. +.++++.++++|++++
T Consensus 310 ~~~~~~~~~l~~-~gv~v~~g~~f~~--~~~iRi~~~-~~~~~~~l~~al~~~~ 359 (359)
T PRK03158 310 RDANELFEALLK-KGYIVRSGAALGF--PTGVRITIG-LKEQNDKIIELLKELL 359 (359)
T ss_pred CCHHHHHHHHHH-CCeEEeeCCCCCC--CCeEEEecC-CHHHHHHHHHHHHHhC
Confidence 356677777765 5999999999863 579999974 7889999999998763
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-46 Score=355.87 Aligned_cols=336 Identities=28% Similarity=0.474 Sum_probs=274.0
Q ss_pred ceEEecCCCCCCC----ChHHHHHHHHH-HHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCC-cEEEcCCh
Q 045431 64 EVISLGIGDTTEP----IPEVITSALAK-RSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEG-DIFVSDGA 135 (433)
Q Consensus 64 ~~i~l~~g~~~~~----~~~~~~~a~~~-~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~-~i~~~~G~ 135 (433)
++|+|+.|+++.. +++...+++.+ .... .....|+++.|.++||+++|+|+.+ ++.++++ +|++++|+
T Consensus 2 ~~I~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~ 77 (363)
T PF00155_consen 2 DVINLGSNAPLLLSQNPPPPAAIKAAIRGAATS----SSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGA 77 (363)
T ss_dssp TEEESSSSSTSSTTSSHHHHHHHHHHHHHHHHH----TGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHH
T ss_pred CEEEEECCCCCCcccccchHHHHHHHHHHhhcc----cccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEeccc
Confidence 5899999999765 45555555554 2221 5677999999999999999999984 6667888 99999999
Q ss_pred HHHHHHH-HHh-cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CC----
Q 045431 136 KCDISRL-QIV-FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VA---- 204 (433)
Q Consensus 136 ~~al~~l-~~l-~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---- 204 (433)
++++.++ ..+ .++||.|++++|+|+.+...++..| .+++.++.+.+.++..+++. .+
T Consensus 78 ~~~~~~~~~~~~~~~~~~vlv~~P~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~ 145 (363)
T PF00155_consen 78 QAALFLLLRLLKINPGDTVLVPDPCYPSYIEAARLLG------------AEVIPVPLDSENDFHLDPEALEEALDELPSK 145 (363)
T ss_dssp HHHHHHHHHHHHSSTTSEEEEEESSSTHHHHHHHHTT------------SEEEEEEEEETTTTEETHHHHHHHHHTSHTT
T ss_pred ccchhhhhhcccccccccceecCCccccccccccccC------------ceeeecccccccccccccccccccccccccc
Confidence 9999985 555 5799999999999999999999999 47778886544444444321 11
Q ss_pred --CccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCc-ccccCCCCcceEEEeccccccc
Q 045431 205 --RTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRS-IFEIPGAKEVAIETSSFSKYAG 280 (433)
Q Consensus 205 --~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~-~~~~~~~~~~vi~i~S~sK~~~ 280 (433)
+++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.+... ..+ ...++. ..++++++||||.+|
T Consensus 146 ~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~g 224 (363)
T PF00155_consen 146 GPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDE-DDNVIVVGSLSKSFG 224 (363)
T ss_dssp TETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTT-TSTEEEEEESTTTTT
T ss_pred ccccceeeecccccccccccccccccchhhhhcccccceeeeeceeccccCCCccCcccccccc-cccceeeeecccccc
Confidence 568899999999999999999999999999999999999999999888754 222 334433 345899999999999
Q ss_pred ccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh--hHHHHHHHHHHHHHHHHHHHHhh
Q 045431 281 FTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF--KAVHEVIGFYKENTDIIVETFNS 358 (433)
Q Consensus 281 ~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~ 358 (433)
++|+|+||++++++++ +.+.+....... +.+.|.++.+++.+... ++++++++.++++++.+.+.|++
T Consensus 225 ~~GlRvG~i~~~~~~~--------~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~ 294 (363)
T PF00155_consen 225 LPGLRVGYIVAPPELI--------ERLRRFQRSGLS--SSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEE 294 (363)
T ss_dssp SGGGTEEEEEEEHHHH--------HHHHHHHHHTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccchhhhh--------hhhhhccccccc--cchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHH
Confidence 9999999999988774 666665544333 78888888888886554 38899999999999999999999
Q ss_pred cCCeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee-ccChhHHHHHHHHH
Q 045431 359 LGFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA-FGHRGNVLEACKRF 428 (433)
Q Consensus 359 ~g~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~-~~~~~~l~~~l~~l 428 (433)
.|+.+.++.+|+|+|+.++..++.++.++|++++||.+.||..|+. +++||+++ ..+++++++++++|
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~pg~~~~~--~~~iRi~~a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 295 IGITVLPPEAGFFLWVRLDPNDAEELAQELLEEYGILVRPGSYFGV--PGYIRISLASHSEEDLEEALERL 363 (363)
T ss_dssp TTSEEEHHSBSSEEEEEESHHHHHHHHHHHHHHHTEEEEEGGGGTS--TTEEEEEGGCSCHHHHHHHHHHH
T ss_pred hhhheeeccCccEEEEEcccchHHHHHHHHHHhCCEEEEecCCCCC--CCEEEEEeccCCHHHHHHHHhhC
Confidence 9999998889999999998545678888988877999999999887 78999999 66999999999986
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=342.15 Aligned_cols=336 Identities=21% Similarity=0.310 Sum_probs=269.4
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR 141 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~ 141 (433)
+.++|+|+.+++++++++.+.+++.+.+.. .....|+++.|.++||+++|+++ ++++++|++|+|+++++.+
T Consensus 27 ~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~----~~~~~y~~~~g~~~lr~~ia~~l----~~~~~~v~~~~g~t~al~~ 98 (380)
T PRK06225 27 DKEMIWMGQNTNHLGPHEEVREAMIRCIEE----GEYCKYPPPEGFPELRELILKDL----GLDDDEALITAGATESLYL 98 (380)
T ss_pred cCCeEEccCCCCCCCCCHHHHHHHHHHHhc----CCCCCCCCCcchHHHHHHHHHhc----CCCCCcEEEeCCHHHHHHH
Confidence 346999999999999999999999998863 33567888889999999999997 7889999999999999997
Q ss_pred -HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCc-cCCcccCCC---C--CCCccEEEEcCC
Q 045431 142 -LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTA-ENGFFPDLS---T--VARTDIIFFCSP 214 (433)
Q Consensus 142 -l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~--~~~~~~i~l~~p 214 (433)
+..++.+||+|++++|+|..+...++..| ..++.++.+. ++++..+++ . .+++++++++||
T Consensus 99 ~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p 166 (380)
T PRK06225 99 VMRAFLSPGDNAVTPDPGYLIIDNFASRFG------------AEVIEVPIYSEECNYKLTPELVKENMDENTRLIYLIDP 166 (380)
T ss_pred HHHHhcCCCCEEEEcCCCCcchHHHHHHhC------------ceEEeeccccccCCccCCHHHHHhhcCCCceEEEEeCC
Confidence 57778999999999999999888888888 4777777642 223333322 1 357889999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecccc
Q 045431 215 NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKE 294 (433)
Q Consensus 215 ~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~ 294 (433)
|||||.+++.+++++|+++|++||+++|+||+|.+|..+. .+...++ +++++++.||||++|++|+|+||++++++
T Consensus 167 ~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~--~~~~~~~--~~~~i~~~s~SK~~g~~G~RiG~i~~~~~ 242 (380)
T PRK06225 167 LNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREH--TLAAEYA--PEHTVTSYSFSKIFGMAGLRIGAVVATPD 242 (380)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccC--CchhhcC--CCCEEEEeechhhcCCccceeEEEecCHH
Confidence 9999999999999999999999999999999998875432 2222332 46789999999999999999999999988
Q ss_pred ccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCee-ecCCCccEE
Q 045431 295 LLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKV-YGGKNAPYV 372 (433)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~-~~~~~g~~~ 372 (433)
++ +.+.... ....+.+.++|.++.+++... ..++++.++.++++++.+.+.|+++ |+.+ ..+.+|+|+
T Consensus 243 l~--------~~~~~~~-~~~~~~~~~~~~~a~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~ 312 (380)
T PRK06225 243 LI--------EVVKSIV-INDLGTNVIAQEAAIAGLKVK-DEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSHGNMM 312 (380)
T ss_pred HH--------HHHHHHH-hcccCCCHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCCCCCeEE
Confidence 75 5555443 234557889999888888742 3567788888888899999999885 5432 234678899
Q ss_pred EEECC--CCChHHHHHHHHHcCCeEecCCCCCCC-CCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 373 WVQFP--GRSSWDVFSEILEKTHVVTTPGSGFGP-GGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 373 ~~~~~--~~~~~~~~~~l~~~~gi~v~~g~~f~~-~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
|+.++ +.+..++...+. ++||.+.||..|+. .+++++|+++..+++++++++++|++++
T Consensus 313 ~~~~~~~~~~~~~l~~~l~-~~gi~v~~g~~~~~~~~~~~iR~s~~~~~e~l~~~~~~l~~~~ 374 (380)
T PRK06225 313 VIDISEAGIDPEDLVEYLL-ERKIFVRQGTYTSKRFGDRYIRVSFSIPREQVEVFCEEFPDVV 374 (380)
T ss_pred EEEcccccCCHHHHHHHHH-HCCEEEcCCcccCcCCCCceEEEEeCCCHHHHHHHHHHHHHHH
Confidence 99986 346677777776 55999999987753 2467999999888999999999999876
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=345.28 Aligned_cols=326 Identities=24% Similarity=0.363 Sum_probs=254.9
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR 141 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~ 141 (433)
.+++|+|+.|.+++.+|+.+.+++.+... ....|++..| .+||+++|+++ ++++++|++|+|+++++.+
T Consensus 35 ~~~~i~l~~~~~~~~~~~~~~~al~~~~~------~~~~Y~~~~g-~~lr~~ia~~~----~~~~~~i~~t~G~~~~l~~ 103 (371)
T PRK05166 35 VPRIAKLGSNENPLGPSPAVRRAFADIAE------LLRLYPDPQG-RALREAIAART----GVPADRIILGNGSEDLIAV 103 (371)
T ss_pred CcceEEcCCCCCCCCCCHHHHHHHHHHHH------HhhcCCCCcH-HHHHHHHHHHh----CcCHHHEEEcCCHHHHHHH
Confidence 44689999999988888888888877542 2457888788 49999999997 7889999999999999997
Q ss_pred -HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEEEEcCCCCc
Q 045431 142 -LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIFFCSPNNP 217 (433)
Q Consensus 142 -l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~~p~nP 217 (433)
+..++++||.|++++|+|+.+...++..| .+++.++.+.+.++..+ ++. .+++++++++|||||
T Consensus 104 ~~~~~~~~gd~vli~~P~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NP 171 (371)
T PRK05166 104 ICRAVLRPGDRVVTLYPSFPLHEDYPTMMG------------ARVERVTVTPDLGFDLDALCAAVARAPRMLMFSNPSNP 171 (371)
T ss_pred HHHHhcCCCCEEEEcCCChHHHHHHHHHcC------------CeEEEeecCCCCCCCHHHHHHhhhcCCCEEEEeCCCCC
Confidence 47778999999999999999998888888 47888888654343322 221 257799999999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccc-cCCCCcceEEEecccccccccccceeeeecc-ccc
Q 045431 218 TGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFE-IPGAKEVAIETSSFSKYAGFTGVRLGWTVIP-KEL 295 (433)
Q Consensus 218 tG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~-~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~-~~~ 295 (433)
||.+++.+++++|+++|++ +++||+||+|.++.+++...+... ++...+++|+++||||.+|++|+|+||++++ +++
T Consensus 172 tG~~~~~~~~~~l~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~~~l 250 (371)
T PRK05166 172 VGSWLTADQLARVLDATPP-ETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSDPEL 250 (371)
T ss_pred CCCCCCHHHHHHHHHhCCC-CcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecCCHHH
Confidence 9999999999999999874 899999999999886543333332 2222457999999999999999999998864 444
Q ss_pred cccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEE
Q 045431 296 LFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQ 375 (433)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~ 375 (433)
+ +.+.+.. ...+++.++|.++.+++.+. .++++.++.++++++.+.+.|+++|+.+. +.+|+|+|++
T Consensus 251 ~--------~~~~~~~--~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~r~~l~~~L~~~g~~~~-p~~g~fl~~~ 317 (371)
T PRK05166 251 V--------GLLDRVR--TPFNVNGAAQAAALAALDDE--EHLAKGVALALAERERLKKELAEMGYRIA-PSRANFLFFD 317 (371)
T ss_pred H--------HHHHHhc--cCCCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHCcCeeC-CCcCCEEEEe
Confidence 3 5555433 23457889998888888743 56888889999999999999999888764 4678999999
Q ss_pred CCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccC--hhHHHHHHHHH
Q 045431 376 FPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGH--RGNVLEACKRF 428 (433)
Q Consensus 376 ~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~--~~~l~~~l~~l 428 (433)
++. ++.++...++++ ||.+.||..++ .+++|||++... .+.+.++++++
T Consensus 318 ~~~-~~~~l~~~l~~~-gi~v~p~~~~~--~~~~iRi~~~~~~~~~~l~~~l~~i 368 (371)
T PRK05166 318 ARR-PASAVAEALLRQ-GVIVKPWKQPG--FETFIRVSIGSPEENDHFVAALDKV 368 (371)
T ss_pred CCC-CHHHHHHHHHHC-CeEEecCCCCC--CCCeEEEEcCCHHHHHHHHHHHHHH
Confidence 863 466777777665 99999997643 468999998642 34455555444
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=343.74 Aligned_cols=324 Identities=18% Similarity=0.274 Sum_probs=260.2
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHH-
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRL- 142 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l- 142 (433)
..|+|+.|++++++|+.+.+++.+.+.. ...|+++ +.++||++||+++ ++++++|++|+|+++++.++
T Consensus 33 ~~~~l~~~~~~~~~~~~~~~a~~~~~~~------~~~Y~~~-~~~~Lr~~ia~~~----~~~~~~I~it~G~~~~l~~~~ 101 (369)
T PRK08153 33 FRARIGANESGFGPSPSVIAAMREAAAE------IWKYGDP-ENHDLRHALAAHH----GVAPENIMVGEGIDGLLGLIV 101 (369)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHHH------hhcCCCC-ccHHHHHHHHHHh----CCCHHHEEEcCCHHHHHHHHH
Confidence 3579999999999999999999887632 2468655 5899999999998 78999999999999999985
Q ss_pred HHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCC---CCCCccEEEEcCCCCccc
Q 045431 143 QIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS---TVARTDIIFFCSPNNPTG 219 (433)
Q Consensus 143 ~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~l~~p~nPtG 219 (433)
..++++||.|++++|+|+.+...+...| .+++.+|.+.+.....++. ...++++++++|||||||
T Consensus 102 ~~~~~~gd~vlv~~p~y~~~~~~~~~~g------------~~~~~vp~~~~~~~~~~l~~~~~~~~~~~i~l~~P~NPtG 169 (369)
T PRK08153 102 RLYVEPGDPVVTSLGAYPTFNYHVAGFG------------GRLVTVPYRDDREDLDALLDAARRENAPLVYLANPDNPMG 169 (369)
T ss_pred HHhcCCCCEEEECCCcchHHHHHHHHcC------------CeEEEeeCCCCCCCHHHHHHHhcccCCcEEEEeCCCCCCC
Confidence 6678999999999999999998888888 4777888754421111121 125789999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccC
Q 045431 220 AAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSD 299 (433)
Q Consensus 220 ~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~ 299 (433)
.++|.+++++|+++|+ ++++||+||+|.++.+++...++.. ..+++|+++||||++|++|+|+||++++++++
T Consensus 170 ~~~~~~~l~~l~~~~~-~~~~lI~DE~y~~~~~~~~~~~~~~---~~~~~i~~~SfSK~~g~~GlRiG~~v~~~~~~--- 242 (369)
T PRK08153 170 SWHPAADIVAFIEALP-ETTLLVLDEAYCETAPAGAAPPIDT---DDPNVIRMRTFSKAYGLAGARVGYAIGAPGTI--- 242 (369)
T ss_pred CCCCHHHHHHHHHhCC-CCcEEEEeCchhhhcCcccchhhhh---cCCCEEEEecchHhccCcchheeeeecCHHHH---
Confidence 9999999999999887 4999999999999877653333322 24579999999999999999999999998875
Q ss_pred CcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCC-
Q 045431 300 GFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPG- 378 (433)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~- 378 (433)
+.+.+... ..+.+.++|.++.+++++ .+++++.++.++++++.+.+.|++.|+.+. |.+++|+|++++.
T Consensus 243 -----~~l~~~~~--~~~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~~~~~L~~~g~~~~-p~~~~f~~~~~~~~ 312 (369)
T PRK08153 243 -----KAFDKVRN--HFGMNRIAQAAALAALKD--QAYLAEVVGKIAAARDRIAAIARANGLTPL-PSATNFVAIDCGRD 312 (369)
T ss_pred -----HHHHHhhc--CCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCCCccC-CCcCcEEEEECCCC
Confidence 56665443 355899999999999974 356788899999999999999998888755 5789999999862
Q ss_pred -CChHHHHHHHHHcCCeEec-CCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 379 -RSSWDVFSEILEKTHVVTT-PGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 379 -~~~~~~~~~l~~~~gi~v~-~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
....++.+++++ +||.++ ||.. ..++++||++. ++++++.+++.|++++
T Consensus 313 ~~~a~~l~~~l~~-~Gi~v~~p~~~---~~~~~iRis~~-~~~~~~~~~~al~~~~ 363 (369)
T PRK08153 313 GAFARAVLDGLIA-RDIFVRMPGVA---PLDRCIRVSCG-PDEELDLFAEALPEAL 363 (369)
T ss_pred cccHHHHHHHHHH-CCeEEeeCCCC---CCCCeEEEecC-CHHHHHHHHHHHHHHH
Confidence 345566666665 599995 6542 23579999986 7889999999998875
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-44 Score=342.65 Aligned_cols=323 Identities=20% Similarity=0.285 Sum_probs=257.4
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR- 141 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~- 141 (433)
++.|+|+.|++++++|+.+.+++.+.+.. ...|++. +.++||+++++++ ++++++|++|+|+++++.+
T Consensus 43 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~------~~~Y~~~-~~~~Lr~aia~~~----~v~~e~I~it~Gs~~ai~~~ 111 (370)
T PRK09105 43 EGAVFLNANECPLGPSPAARDAAARSAAL------SGRYDLE-LEDDLRTLFAAQE----GLPADHVMAYAGSSEPLNYA 111 (370)
T ss_pred CCcEEecCCCCCCCCCHHHHHHHHHHHHH------hcCCCCc-hHHHHHHHHHHHh----CcChhhEEEcCChHHHHHHH
Confidence 46899999999999999999999887643 1357544 5999999999997 8899999999999999997
Q ss_pred HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CC-CCCCccEEEEcCCCCccc
Q 045431 142 LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LS-TVARTDIIFFCSPNNPTG 219 (433)
Q Consensus 142 l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~i~l~~p~nPtG 219 (433)
+..++++||+|++++|+|+.+...++..| .+++.++.+.+..++.+ ++ ..++++++++||||||||
T Consensus 112 ~~~l~~~gd~Vli~~P~y~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~~~~~~~v~l~nP~NPTG 179 (370)
T PRK09105 112 VLAFTSPTAGLVTADPTYEAGWRAADAQG------------APVAKVPLRADGAHDVKAMLAADPNAGLIYICNPNNPTG 179 (370)
T ss_pred HHHHcCCCCEEEEeCCChHHHHHHHHHcC------------CeEEEecCCCCCCCCHHHHHhcCCCCCEEEEeCCCCCCC
Confidence 57788999999999999999999999999 47778887643222211 21 135688999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccC
Q 045431 220 AAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSD 299 (433)
Q Consensus 220 ~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~ 299 (433)
.+++.++++++++.++ ++++||+||+|.+|... + +...+....+++++++||||++|++|+|+||++++++++
T Consensus 180 ~~~~~~~l~~l~~~~~-~~~~lIvDEaY~~f~~~--~-s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~~i--- 252 (370)
T PRK09105 180 TVTPRADIEWLLANKP-AGSVLLVDEAYIHFSDA--P-SVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAARPDLL--- 252 (370)
T ss_pred cCcCHHHHHHHHHhCC-CCcEEEEECchHHhccC--c-chHHHHhhCCCEEEEecccHhhcCCccceeeeecCHHHH---
Confidence 9999999999999754 58999999999876532 2 333333335689999999999999999999999998885
Q ss_pred CcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCCC
Q 045431 300 GFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGR 379 (433)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~ 379 (433)
+.+... ..+..+.+.|.++.+++.+ ..++++.++.++++++.+.+.|+++|+.+.++.+ .|+|++++ .
T Consensus 253 -----~~l~~~---~~~~~~~~~~~aa~~~L~~--~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~-~f~~~~~~-~ 320 (370)
T PRK09105 253 -----AKLARF---GHNPLPVPAAAAGLASLRD--PKLVPQRRAENAAVREDTIAWLKKKGYKCTPSQA-NCFMVDVK-R 320 (370)
T ss_pred -----HHHHhc---CCCCcCHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCC-cEEEEeCC-C
Confidence 555544 2344788889888888874 3678899999999999999999999988877655 45568876 3
Q ss_pred ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 380 SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 380 ~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+..++...++++ ||.+ |..|. ..++++||++. ++++++++++.|++++
T Consensus 321 ~~~~l~~~L~~~-gI~v--~~~~~-~~~~~~Ris~~-~~~~~~~l~~al~~~~ 368 (370)
T PRK09105 321 PAKAVADAMAKQ-GVFI--GRSWP-IWPNWVRVTVG-SEEEMAAFRSAFAKVM 368 (370)
T ss_pred CHHHHHHHHHHC-CcEE--ecCCC-CCCCeEEEEcC-CHHHHHHHHHHHHHHh
Confidence 566787887765 9998 34453 34689999985 5778899998888765
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-44 Score=342.40 Aligned_cols=325 Identities=20% Similarity=0.330 Sum_probs=258.6
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR- 141 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~- 141 (433)
.++|+|+.|++++++|+.+.+++.+.+.. ....|++ .|.++||+++|+++ ++++++|++|+|+++++.+
T Consensus 24 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~-----~~~~y~~-~~~~~lr~aia~~~----~~~~~~I~it~G~~~al~~~ 93 (353)
T PRK05387 24 AKLIKLNTNENPYPPSPKVLEAIRAALGD-----DLRLYPD-PNADALRQAIAAYY----GLDPEQVFVGNGSDEVLAHA 93 (353)
T ss_pred cceeeccCCCCCCCCCHHHHHHHHHHhhh-----hhhcCCC-CcHHHHHHHHHHHh----CCCHHHEEEcCCHHHHHHHH
Confidence 36899999999988889999999887652 2457854 47799999999998 7899999999999999998
Q ss_pred HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCC-CCccEEEEcCCCCcccc
Q 045431 142 LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV-ARTDIIFFCSPNNPTGA 220 (433)
Q Consensus 142 l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~p~nPtG~ 220 (433)
+..++++||.|++++|+|+.+...++..| .+++.++.+++..+ +++.. ..+++++++|||||||.
T Consensus 94 ~~~l~~~gd~vlv~~P~y~~~~~~~~~~g------------~~~~~v~~~~~~~~--d~~~l~~~~~~v~~~~P~NPtG~ 159 (353)
T PRK05387 94 FLAFFNHDRPLLFPDITYSFYPVYAGLYG------------IPYEEIPLDDDFSI--DVEDYLRPNGGIIFPNPNAPTGI 159 (353)
T ss_pred HHHhcCCCCEEEEeCCCHHHHHHHHHHcC------------CEEEEeecCCCCCC--CHHHHHhcCCEEEEeCCCCCCCC
Confidence 57788999999999999999998888888 47778887643333 33321 35678889999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCC
Q 045431 221 AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDG 300 (433)
Q Consensus 221 ~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~ 300 (433)
++|.+++++|+++++ +++||+||+|.+|... ...++.. ..+++++++||||.+|++|+|+||++++++++
T Consensus 160 ~~~~~~~~~l~~~~~--~~~livDe~y~~~~~~-~~~~~~~---~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~~---- 229 (353)
T PRK05387 160 ALPLAEIERILAANP--DSVVVIDEAYVDFGGE-SAIPLID---RYPNLLVVQTFSKSRSLAGLRVGFAIGHPELI---- 229 (353)
T ss_pred CCCHHHHHHHHHhCC--CcEEEEeCcccccCCc-chHHHHh---hCCCEEEEEehhHhhcchhhhceeeecCHHHH----
Confidence 999999999998653 8999999999876322 1222221 24678999999999999999999999998875
Q ss_pred cchhHHHHHHHhhc-cCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCCC
Q 045431 301 FPVAKDFNRIVCTC-FNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGR 379 (433)
Q Consensus 301 ~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~ 379 (433)
+.+.+..... ..+.+.++|.++.+++.+ ..++++.+++++++++.+.+.|+++|+.+. +.+++|+|+++++.
T Consensus 230 ----~~l~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~~~~~~~~~~ 302 (353)
T PRK05387 230 ----EALNRVKNSFNSYPLDRLAQAGAIAAIED--EAYFEETRAKVIATRERLVEELEALGFEVL-PSKANFVFARHPSH 302 (353)
T ss_pred ----HHHHHhhccCCCCCcCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCCCeEC-CCcCcEEEEECCCC
Confidence 6666554332 345788999998888874 345678889999999999999999988765 46789999999866
Q ss_pred ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 380 SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 380 ~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
++.++.+.+. ++||.+.+... +..++++||++. +.+++++++++|++++
T Consensus 303 ~~~~~~~~l~-~~gi~v~~~~~--~~~~~~iRis~~-~~~~~~~~~~~L~~~~ 351 (353)
T PRK05387 303 DAAELAAKLR-ERGIIVRHFNK--PRIDQFLRITIG-TDEEMEALVDALKEIL 351 (353)
T ss_pred CHHHHHHHHH-HCCEEEEECCC--CCCCCeEEEEeC-CHHHHHHHHHHHHHHh
Confidence 6777777765 45999975321 234679999985 6789999999999876
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=349.87 Aligned_cols=341 Identities=16% Similarity=0.197 Sum_probs=249.3
Q ss_pred CCceEEecCCC-CCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc-cC-CCCCCcE-----EEcC
Q 045431 62 DAEVISLGIGD-TTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK-DL-GIEEGDI-----FVSD 133 (433)
Q Consensus 62 ~~~~i~l~~g~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~-~~-~~~~~~i-----~~~~ 133 (433)
+...|+++.|. ++...++.+.+++.++...........+|++..|.++||+++++|+.+ +. ..++++| +.++
T Consensus 47 ~~~~l~l~~g~~p~~~~~p~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~ 126 (423)
T PLN02397 47 SPVKLNLGVGAYRTEEGKPVVLNVVRKAEQRLLAGSRNKEYLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGT 126 (423)
T ss_pred CcceEecccceeeCCCCCcccchHHHHHHHHhhccCCCCCCCCcCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccch
Confidence 44679999996 555455554455555432221113345899999999999999999965 22 1223333 3444
Q ss_pred ChHHHHHHHHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCC-------C-CCC
Q 045431 134 GAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS-------T-VAR 205 (433)
Q Consensus 134 G~~~al~~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~ 205 (433)
|+.+.+..+..++.|||+|++++|+|+.|...++..| .+++.++..+++++..+++ . .++
T Consensus 127 Ga~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~g------------~~~~~v~l~~~~~~~~d~~~l~~~l~~~~~~ 194 (423)
T PLN02397 127 GSLRLGAEFLARFYPGSTIYIPNPTWGNHHNIFRDAG------------VPVRTYRYYDPKTRGLDFDGLLEDLKAAPDG 194 (423)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHcC------------CeEEEeecccCcCCccCHHHHHHHHHhCCCC
Confidence 4444333456666799999999999999999999999 4777887632222223322 1 245
Q ss_pred ccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC---CCCcccccCCCCcceEEEeccccccccc
Q 045431 206 TDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDD---NPRSIFEIPGAKEVAIETSSFSKYAGFT 282 (433)
Q Consensus 206 ~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~---~~~~~~~~~~~~~~vi~i~S~sK~~~~~ 282 (433)
++++++++||||||.+++.+++++|+++|++||++||+||+|.++.+++ .+.++..+....+++|+++||||+++++
T Consensus 195 ~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~ 274 (423)
T PLN02397 195 SFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLY 274 (423)
T ss_pred CEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCc
Confidence 6777778999999999999999999999999999999999999998864 1233333332345799999999999999
Q ss_pred ccceeeee--c-cccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-----hHHHHHHHHHHHHHHHHHH
Q 045431 283 GVRLGWTV--I-PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-----KAVHEVIGFYKENTDIIVE 354 (433)
Q Consensus 283 G~r~G~l~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~l~~ 354 (433)
|||+||++ + +++++. ++...+.........+++.+.|.++.++|++..+ ++++++++.++++++.+.+
T Consensus 275 G~RvG~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~ 350 (423)
T PLN02397 275 GERVGALSVVCKSADVAV----RVKSQLKLIARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYD 350 (423)
T ss_pred cccceEEEEEeCCHHHHH----HHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999985 4 444320 0112333333333445778899988888886421 3478889999999999999
Q ss_pred HHhhcC----CeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec-cChhHHHHHHHHHH
Q 045431 355 TFNSLG----FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF-GHRGNVLEACKRFK 429 (433)
Q Consensus 355 ~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~-~~~~~l~~~l~~l~ 429 (433)
.|+++| +.+..|++|+|+|++++ .+++..|++++||.+.+ .+ |++++ .+.+.+++++++|+
T Consensus 351 ~L~~~~~~~~~~~~~p~gg~fl~~~l~----~~~~~~Ll~~~~V~v~~--------~~--Ri~~~~~~~~~i~~~~~~i~ 416 (423)
T PLN02397 351 ALEARGSPGDWSHITKQIGMFSFTGLN----KEQVDRMTKEYHIYMTR--------DG--RISMAGLSSKNVPYLADAIH 416 (423)
T ss_pred HHHhcCCCCCCCcccCCceEEEecCCC----HHHHHHHHHhCCEEECC--------CC--eEEEeeCCHHHHHHHHHHHH
Confidence 999987 77777899999999985 45888999999999963 12 99986 69999999999999
Q ss_pred Hhh
Q 045431 430 HLY 432 (433)
Q Consensus 430 ~~l 432 (433)
+++
T Consensus 417 ~~~ 419 (423)
T PLN02397 417 AVV 419 (423)
T ss_pred HHH
Confidence 886
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-44 Score=333.29 Aligned_cols=323 Identities=21% Similarity=0.351 Sum_probs=266.8
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCC-CCCCcEEEcCChHHHHHH-
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLG-IEEGDIFVSDGAKCDISR- 141 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~-~~~~~i~~~~G~~~al~~- 141 (433)
++++|+.+++++++|+.+.+++.+.+. ....| |.....+|++++++++ + .++++|++++|+++.|.+
T Consensus 23 ~~i~LssNenP~gp~~~~~~~~~~~~~------~~~rY-Pd~~~~~l~~a~a~~~----~~~~~~~V~~gnGsde~i~~l 91 (356)
T COG0079 23 GIIKLSSNENPYGPPPKVIEAIRAALD------KLNRY-PDPDYRELRAALAEYY----GVVDPENVLVGNGSDELIELL 91 (356)
T ss_pred cceeecCCCCCCCCCHHHHHHHHHHHH------hhccC-CCCcHHHHHHHHHHHh----CCCCcceEEEcCChHHHHHHH
Confidence 589999999999999999999988774 34577 4458999999999998 6 788999999999999998
Q ss_pred HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEEcCCCC
Q 045431 142 LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFFCSPNN 216 (433)
Q Consensus 142 l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~~p~n 216 (433)
+..++.+||+|+++.|+|..|...++..| .+++.++.++ +..+++. ..++++|++|||||
T Consensus 92 ~~~~~~~gd~vl~~~Ptf~~Y~~~a~~~g------------~~~~~v~~~~---~~~d~~~~~~~~~~~~~lv~i~nPNN 156 (356)
T COG0079 92 VRAFVEPGDTVLIPEPTFSMYEIAAQLAG------------AEVVKVPLKE---FRLDLDAILAAIRDKTKLVFLCNPNN 156 (356)
T ss_pred HHHhhcCCCEEEEcCCChHHHHHHHHhcC------------CeEEEecccc---cccCHHHHHHhhhcCCCEEEEeCCCC
Confidence 57888999999999999999999999999 4788888765 3333222 23799999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecccccc
Q 045431 217 PTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELL 296 (433)
Q Consensus 217 PtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~ 296 (433)
|||..++.++++++++.+.+ +.+||+||+|.+|... ..+.-.. .++|+++++||||.||++|+|+||++++++++
T Consensus 157 PTG~~~~~~~l~~l~~~~~~-~~~vVvDEAY~eF~~~---~~~~l~~-~~~nlivlRTfSKa~gLAGlRlGy~ia~~~~i 231 (356)
T COG0079 157 PTGTLLPREELRALLEALPE-GGLVVIDEAYIEFSPE---SSLELLK-YPPNLIVLRTFSKAFGLAGLRVGYAIANPELI 231 (356)
T ss_pred CCCCCCCHHHHHHHHHhCCC-CcEEEEeCchhhcCCc---hhhhhcc-CCCCEEEEEecHHhhhcchhceeeccCCHHHH
Confidence 99999999999999999988 9999999999998762 1121122 35779999999999999999999999999996
Q ss_pred ccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEEC
Q 045431 297 FSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQF 376 (433)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~ 376 (433)
+.+++++. .+..|.+++.++.+++.+. +++++.++...+.++++.+.|+.+|+.-+.|+.++|+++++
T Consensus 232 --------~~l~~vr~--p~~v~~~a~~aa~aal~~~--~~~~~~~~~~~~~r~rl~~~l~~~~~~~v~pS~aNFvlv~~ 299 (356)
T COG0079 232 --------AALNKVRP--PFNVSSPALAAAIAALRDA--DYLEESVERIREERERLYAALKALGLFGVFPSQANFVLVRV 299 (356)
T ss_pred --------HHHHHhcC--CCCCCHHHHHHHHHHcccH--HHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCCCcEEEEEC
Confidence 77776653 3457999999999999866 67899999999999999999999985524456799999999
Q ss_pred CCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 377 PGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 377 ~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+......+.+.|+++ ||.++.... .+..++++||++.. +++.++.+++|++++
T Consensus 300 ~~~~~~~l~~~L~~~-giivR~~~~-~~~~~~~lRitvgt-~een~~ll~AL~~~~ 352 (356)
T COG0079 300 PDAEAAALAEALLKK-GILVRDCSS-VGLLPGYLRITVGT-PEENDRLLAALREVL 352 (356)
T ss_pred CCccHHHHHHHHHHC-CEEEEeCCC-CCCCCCeEEEEeCC-HHHHHHHHHHHHHHH
Confidence 842244666666655 999998765 44457899999854 444499999998775
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=346.02 Aligned_cols=292 Identities=18% Similarity=0.264 Sum_probs=231.5
Q ss_pred CCceEEecCCCCC--------C----------------------CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHH
Q 045431 62 DAEVISLGIGDTT--------E----------------------PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLR 111 (433)
Q Consensus 62 ~~~~i~l~~g~~~--------~----------------------~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr 111 (433)
+.++|+|+.|+|+ + .+++.+.++ ...+.... .....|++..|.++||
T Consensus 37 g~~vi~l~iG~Pd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~~~i~~a-~~~l~~~~--~~~~~Y~~~~G~~~LR 113 (407)
T PLN02368 37 GKKIIFTNVGNPHALGQKPLTFPRQVVALCQAPFLLDDPNVGLLFPADAIARA-KHYLSLTS--GGLGAYSDSRGLPGVR 113 (407)
T ss_pred hhhhhcccCCChhHcCCCCchHHHHHHHHhcCchhcCCccccccCCHHHHHHH-HHHHhcCC--CCCCCCCCCCCCHHHH
Confidence 4579999999996 2 134444444 44432211 3467899999999999
Q ss_pred HHHHHHHhc--cCCCCCCcEEEcCChHHHHHH-HHHhc-CCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEE
Q 045431 112 AAIASTFYK--DLGIEEGDIFVSDGAKCDISR-LQIVF-GSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEY 187 (433)
Q Consensus 112 ~~la~~l~~--~~~~~~~~i~~~~G~~~al~~-l~~l~-~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 187 (433)
++||+|+.+ ++.+++++|++|+|+++++.+ +..++ ++||.|++++|+|+.|...++..| .+++.
T Consensus 114 ~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~y~~~~~~~g------------~~~v~ 181 (407)
T PLN02368 114 KEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYSATISLLG------------GTLVP 181 (407)
T ss_pred HHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCccHHHHHHHcC------------CEEEE
Confidence 999999975 666789999999999999987 56676 799999999999999999999999 47888
Q ss_pred eecCccCCcccCCCC-----C------CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-
Q 045431 188 MRCTAENGFFPDLST-----V------ARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN- 255 (433)
Q Consensus 188 ~~~~~~~~~~~~~~~-----~------~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~- 255 (433)
++.+.++++..+++. . .++++++++|||||||.+++.+++++|+++|++|+++||+||+|.++.+++.
T Consensus 182 v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~ 261 (407)
T PLN02368 182 YYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQDER 261 (407)
T ss_pred EecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCC
Confidence 888765555554332 1 1689999999999999999999999999999999999999999999988753
Q ss_pred -CCccccc----CC---CCcceEEEecccccc-cccccceeeeec---cccccccCCcchhHHHHHHHhhccCCCcHHHH
Q 045431 256 -PRSIFEI----PG---AKEVAIETSSFSKYA-GFTGVRLGWTVI---PKELLFSDGFPVAKDFNRIVCTCFNGASNISQ 323 (433)
Q Consensus 256 -~~~~~~~----~~---~~~~vi~i~S~sK~~-~~~G~r~G~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 323 (433)
+.++.++ +. ..+++|+++||||+| |++|||+||+++ +++++ +.+.+... ...+++.++|
T Consensus 262 ~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li--------~~~~~~~~-~~~~~~~~~Q 332 (407)
T PLN02368 262 PFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTV--------EEIYKVAS-IALSPNVSGQ 332 (407)
T ss_pred CcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHH--------HHHHHHhc-ccCCCCcHHH
Confidence 3454432 11 134899999999998 899999999994 76664 56665532 3455888999
Q ss_pred HHHHHhcCcCC---------hhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCCccEEEEECC
Q 045431 324 AGGLACLSPEG---------FKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAPYVWVQFP 377 (433)
Q Consensus 324 ~~~~~~l~~~~---------~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~~~~~ 377 (433)
.++.++++... .++++++++.|++|++.+.+.|+++ |+.+..|++|+|+|++++
T Consensus 333 ~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~~~~~P~Gafy~~~~i~ 396 (407)
T PLN02368 333 IFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVVCNFTEGAMYSFPQIK 396 (407)
T ss_pred HHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEeCCCCeeeEeccCCC
Confidence 99999997431 1234567899999999999999998 999988999999998776
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=339.48 Aligned_cols=329 Identities=19% Similarity=0.255 Sum_probs=256.2
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDISR 141 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~al~~ 141 (433)
..|+|+.|+|++++|+.+.+++.+.+.... .....|+ ..|.++||+++|+|+++ ++++++++|++|+|+++++.+
T Consensus 27 ~~i~l~~~~~~~~~~~~~~~al~~~l~~~~--~~~~~Y~-~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~ 103 (368)
T PRK03317 27 VPVRLNTNENPYPPSPALVADIAEAVAEAA--AGLNRYP-DRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQ 103 (368)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhhhh--hhhccCC-CCchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHH
Confidence 469999999999999999999999876421 2356784 56899999999999986 667899999999999999998
Q ss_pred -HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC---CCCccEEEEcCCCC
Q 045431 142 -LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST---VARTDIIFFCSPNN 216 (433)
Q Consensus 142 -l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~i~l~~p~n 216 (433)
+..++++||.|+++.|+|+.+...++..| .+++.++.+++.+++.+ +++ ..++++++++||||
T Consensus 104 ~~~~~~~~gd~v~v~~P~y~~~~~~~~~~g------------~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~i~l~~p~N 171 (368)
T PRK03317 104 LLQAFGGPGRTALGFVPSYSMHPIIARGTH------------TEWVEGPRAADFTLDVDAAVAAIAEHRPDVVFLTSPNN 171 (368)
T ss_pred HHHHhcCCCCEEEEeCCChHHHHHHHHhcC------------CeeEEcccCCCCCCCHHHHHHHHhccCCCEEEEeCCCC
Confidence 57788999999999999999999888777 36666665433232221 211 24688999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecccccc
Q 045431 217 PTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELL 296 (433)
Q Consensus 217 PtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~ 296 (433)
|||.+++.+++++|+++| +++||+||+|.++.+.+.+ +...+....+++++++||||.+|++|+|+||++++++++
T Consensus 172 PtG~~~~~~~l~~l~~~~---~~~lI~DE~y~~~~~~~~~-~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~~~~~~ 247 (368)
T PRK03317 172 PTGTALPLDDVEAILDAA---PGIVVVDEAYAEFRRSGTP-SALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLAAAPAVV 247 (368)
T ss_pred CCCCCCCHHHHHHHHHHC---CceEEEeCCchhhcccCCc-CHHHHHHhCCCEEEEEechhhhccchhhhhhhhCCHHHH
Confidence 999999999888888876 6999999999998765533 222221223478999999999999999999999998885
Q ss_pred ccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEEC
Q 045431 297 FSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQF 376 (433)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~ 376 (433)
+.+.... .....+.++|.++.+++++. +.+.+.+++++++++.+.+.|+++|+.+..+.+++++|.++
T Consensus 248 --------~~l~~~~--~~~~~s~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~ 315 (368)
T PRK03317 248 --------DALRLVR--LPYHLSAVTQAAARAALRHA--DELLASVAALRAERDRVVAWLRELGLRVAPSDANFVLFGRF 315 (368)
T ss_pred --------HHHHhcC--CCCCCCHHHHHHHHHHhhCH--HHHHHHHHHHHHHHHHHHHHHHHCCCEeCCCCCcEEEEecc
Confidence 5555433 24457899999999999742 33445567788999999999999999888777777787676
Q ss_pred CCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 377 PGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 377 ~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+ +..++...++ ++||.+.+.. .++++||++. +.++++.++++|++++
T Consensus 316 ~--~~~~~~~~l~-~~Gv~v~~~~-----~~~~iRi~~~-~~~~~~~~~~~l~~~~ 362 (368)
T PRK03317 316 A--DRHAVWQGLL-DRGVLIRDVG-----IPGWLRVTIG-TPEENDAFLAALAEVL 362 (368)
T ss_pred C--CHHHHHHHHH-HCCEEEEeCC-----CCCeEEEecC-CHHHHHHHHHHHHHHH
Confidence 4 4455666655 5699998642 2579999975 6678899999988775
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=337.50 Aligned_cols=324 Identities=19% Similarity=0.294 Sum_probs=259.4
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCC-CcEEEcCChHHHHHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEE-GDIFVSDGAKCDISR 141 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~-~~i~~~~G~~~al~~ 141 (433)
.++|+|+.|++++++|+.+.+++.+.+.. .....|++ .|.++||+++|+|+ ++++ ++|++|+|+++++.+
T Consensus 26 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Y~~-~~~~~lr~~ia~~~----~~~~~~~I~~t~G~~~~i~~ 96 (356)
T PRK04870 26 TGMVKLDAMENPYRLPAELRAELGERLAE----VALNRYPD-PRAAALKAALRAAM----GVPAGADVLLGNGSDELIQL 96 (356)
T ss_pred CCceeCcCCCCCCCCCHHHHHHHHHHhhc----cccccCCC-CCHHHHHHHHHHHh----CcCCCCcEEEcCCHHHHHHH
Confidence 46999999999999999999999998753 34567865 68899999999998 5554 589999999999997
Q ss_pred H-HHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC---CCCccEEEEcCCCC
Q 045431 142 L-QIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST---VARTDIIFFCSPNN 216 (433)
Q Consensus 142 l-~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~i~l~~p~n 216 (433)
+ ..++++||+|++++|+|..+...++..| .+++.++.+++.....+ +++ ..++++++++||||
T Consensus 97 ~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g------------~~~~~i~~~~~~~~d~~~l~~~~~~~~~~~v~l~~p~N 164 (356)
T PRK04870 97 LALACAKPGATVLAPEPGFVMYRMSAKLAG------------LEFVGVPLTADFTLDLPAMLAAIAEHRPALVFLAYPNN 164 (356)
T ss_pred HHHHhcCCCCEEEECCCCHHHHHHHHHHcC------------CEEEEecCCCCCCCCHHHHHHHhhcCCCCEEEEcCCCC
Confidence 4 6678999999999999999999999999 47888888643232222 211 24789999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecccccc
Q 045431 217 PTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELL 296 (433)
Q Consensus 217 PtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~ 296 (433)
|||.+++.+++++|+++| ++++|+||+|.++...+ ..+ .+.. .+++++++|||| ++++|+|+||++++++++
T Consensus 165 PtG~~~~~~~~~~i~~~~---~~~ii~De~y~~~~~~~-~~~--~~~~-~~~vi~~~S~SK-~~~~GlRiG~~i~~~~~i 236 (356)
T PRK04870 165 PTGNLFDDADVERIIEAA---PGLVVVDEAYQPFAGDS-WLP--RLAR-FPNLLVMRTVSK-LGLAGLRLGYLAGHPAWI 236 (356)
T ss_pred CCCCCCCHHHHHHHHHHC---CCEEEEECCchhhcCcc-hHH--HHhh-CCCEEEEecchh-hhhHHHhhhhhhCCHHHH
Confidence 999999999999999988 68899999999876432 111 1222 357999999999 789999999999998875
Q ss_pred ccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCCccEEEEE
Q 045431 297 FSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAPYVWVQ 375 (433)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~~~ 375 (433)
+.+.... ..+..+.++|.++..++++ ..++++.+++++++++.+.+.|+++ |+.+. +.+|+|+|++
T Consensus 237 --------~~~~~~~--~~~~~~~~~q~~a~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~ 303 (356)
T PRK04870 237 --------AELDKVR--PPYNVNVLTQATALFALEH--VDVLDAQAAQLRAERTRLAAALAALPGVTVF-PSAANFILVR 303 (356)
T ss_pred --------HHHHHcc--CCCcCCHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCeEEEEE
Confidence 5555443 2345788999988888864 2457888889999999999999987 87664 4678899999
Q ss_pred CCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 376 FPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 376 ~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
++ +..++... ++++||.+++|..|+...++++||++. +.++.+.++++|++++
T Consensus 304 ~~--~~~~~~~~-l~~~gI~v~~~~~f~~~~~~~iRis~~-~~~~~~~l~~al~~~~ 356 (356)
T PRK04870 304 VP--DAAAVFDG-LKTRGVLVKNLSGMHPLLANCLRVTVG-TPEENAQFLAALKAAL 356 (356)
T ss_pred CC--CHHHHHHH-HHHCCEEEEECCCCCCCCCCeEEEeCC-CHHHHHHHHHHHHHhC
Confidence 87 44555544 566799999999987656789999985 6788889988888764
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=339.34 Aligned_cols=323 Identities=21% Similarity=0.298 Sum_probs=252.8
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR 141 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~ 141 (433)
+.++|+|+.|++++++|+.+.+++.+. .....|+ ..+.++||+++|+++ ++++++|++|+|+++++.+
T Consensus 51 ~~~~i~l~~n~~p~~~~~~v~~a~~~~-------~~~~~Yp-~~~~~~lr~~ia~~~----~~~~~~I~~t~Ga~~~i~~ 118 (380)
T PLN03026 51 PEDIVKLDANENPYGPPPEVLEALGNM-------KFPYVYP-DPESRRLRAALAEDS----GLESENILVGCGADELIDL 118 (380)
T ss_pred ccceEEccCCCCCCCCCHHHHHHHHhh-------HhhccCC-CCCHHHHHHHHHHHh----CcChhhEEEcCCHHHHHHH
Confidence 357899999999988888888877542 1123474 457899999999998 7899999999999999997
Q ss_pred H-HHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC---CCCccEEEEcCCCC
Q 045431 142 L-QIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST---VARTDIIFFCSPNN 216 (433)
Q Consensus 142 l-~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~i~l~~p~n 216 (433)
+ ..++++||+|++++|+|+.|...++..| .+++.++.+.+..+..+ ++. .+++++|+++||||
T Consensus 119 ~~~~~~~~gd~Vlv~~P~y~~y~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~~~~~~~~~v~l~~P~N 186 (380)
T PLN03026 119 LMRCVLDPGDKIIDCPPTFGMYVFDAAVNG------------AEVIKVPRTPDFSLDVPRIVEAVETHKPKLLFLTSPNN 186 (380)
T ss_pred HHHHhcCCCCEEEEcCCChHHHHHHHHHcC------------CEEEEeecCCCCCcCHHHHHHHHhccCCcEEEEeCCCC
Confidence 4 6778999999999999999988888888 47777777533222211 211 36889999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecccccc
Q 045431 217 PTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELL 296 (433)
Q Consensus 217 PtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~ 296 (433)
|||.+++.+++++|++.+ ++||+||+|.+|.+.+... ..++ ..+++|+++||||.+|++|+|+||++++++++
T Consensus 187 PTG~~~~~~~l~~l~~~~----~~vi~DeaY~~~~~~~~~~--~~~~-~~~~viv~~SfSK~~glaGlRiGy~~~~~~~i 259 (380)
T PLN03026 187 PDGSIISDDDLLKILELP----ILVVLDEAYIEFSTQESRM--KWVK-KYDNLIVLRTFSKRAGLAGLRVGYGAFPLSII 259 (380)
T ss_pred CCCCCCCHHHHHHHHhcC----CEEEEECcchhhcCCcchH--HHHH-hCCCEEEEecchHhhcCccccceeeecCHHHH
Confidence 999999999998888753 8999999999987653221 1222 24689999999999999999999999998885
Q ss_pred ccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEEC
Q 045431 297 FSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQF 376 (433)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~ 376 (433)
+.+.+... .+..+.++|.++.++|++ ..++++.++.++++++.+.+.|++++.....+.+++|+|+++
T Consensus 260 --------~~l~~~~~--~~~~~~~~q~aa~~aL~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~~~f~~~~~ 327 (380)
T PLN03026 260 --------EYLWRAKQ--PYNVSVAAEVAACAALSN--PKYLEDVKNALVEERERLFGLLKEVPFLEPYPSDANFILCRV 327 (380)
T ss_pred --------HHHHHhcC--CCCCCHHHHHHHHHHhhC--HHHHHHHHHHHHHHHHHHHHHHHHCCCCeECCCCCeEEEEEC
Confidence 55655443 345788999999999974 357888999999999999999998853223567899999999
Q ss_pred C-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHh
Q 045431 377 P-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHL 431 (433)
Q Consensus 377 ~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~ 431 (433)
+ +.++.++...++ ++||.++++..+ ..++++||++. +.++++.+++.|+++
T Consensus 328 ~~~~~~~~~~~~l~-~~gI~v~~~~~~--~~~~~lRis~~-~~~~~~~l~~al~~~ 379 (380)
T PLN03026 328 TSGRDAKKLKEDLA-KMGVMVRHYNSK--ELKGYIRVSVG-KPEHTDALMEALKQL 379 (380)
T ss_pred CCCCCHHHHHHHHH-HCCeEEEECCCC--CCCCEEEEecC-CHHHHHHHHHHHHHh
Confidence 7 456677777776 569999998653 34679999986 556777777777654
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-44 Score=343.15 Aligned_cols=341 Identities=19% Similarity=0.217 Sum_probs=254.0
Q ss_pred EEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc-cCCCC---CCcEEEcCChHHHHHH
Q 045431 66 ISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK-DLGIE---EGDIFVSDGAKCDISR 141 (433)
Q Consensus 66 i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~-~~~~~---~~~i~~~~G~~~al~~ 141 (433)
++.+.|....+..+.+.+++.+.+.+... ...++|+++.|.++||+++++++.+ ..... .++|++|+|+++++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~ 84 (388)
T PRK08637 6 YNATIGMATEKGGPMYLSSLQDLLNDLTP-DEIFPYAPPQGIPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSL 84 (388)
T ss_pred eecceeeEecCCCcchHHHHHHHHHhhcc-ccccCCCCCCCCHHHHHHHHHHHhccCccccccccceeeEccchHHHHHH
Confidence 55555554333344666666666665322 5667999999999999999999875 32333 3689999999999997
Q ss_pred -HHHhcCCCCEEEEeCCCChhhhhhHH-HhCCcccccccccccceEEEeecC-ccCCcccC-CCC------CCCccEEEE
Q 045431 142 -LQIVFGSNVTMAVQDPSYPAYVDSSV-IMGQTGEFQKDAEKYGKIEYMRCT-AENGFFPD-LST------VARTDIIFF 211 (433)
Q Consensus 142 -l~~l~~~gd~Vl~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~------~~~~~~i~l 211 (433)
+..+++|||.|++++|+|+.+...+. ..| .+++.++.. +++++..+ ++. .+...++++
T Consensus 85 ~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~g------------~~vv~v~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~ 152 (388)
T PRK08637 85 VADLFVDQGDTVLLPDHNWGNYKLTFNTRRG------------AEIVTYPIFDEDGGFDTDALKEALQAAYNKGKVIVIL 152 (388)
T ss_pred HHHHhcCCCCEEEEcCCCCccHHHHHHHhcC------------CEEEEecccCCCCcCCHHHHHHHHHhhccCCCEEEEE
Confidence 57778999999999999999998764 567 478888873 33344332 211 123345666
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHH-----cCCEEEEeccccccccCCCC-Ccc-cccCCCCcce--EEEeccccccccc
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKD-----NGSIIVYDSAYALYISDDNP-RSI-FEIPGAKEVA--IETSSFSKYAGFT 282 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~-----~~~~li~De~~~~~~~~~~~-~~~-~~~~~~~~~v--i~i~S~sK~~~~~ 282 (433)
+|||||||.++|.+++++|+++|++ |+++||+||+|.++.+++.+ .++ ..+....+++ ++++||||.+++|
T Consensus 153 ~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~p 232 (388)
T PRK08637 153 NFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVW 232 (388)
T ss_pred eCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCc
Confidence 7999999999999999999998875 89999999999999887642 233 2222224564 4567999999899
Q ss_pred ccceeeeeccc------cccccCCcchhHHHHHH----HhhccCCCcHHHHHHHHHhcCcCCh-hHHHHHHHHHHHHHHH
Q 045431 283 GVRLGWTVIPK------ELLFSDGFPVAKDFNRI----VCTCFNGASNISQAGGLACLSPEGF-KAVHEVIGFYKENTDI 351 (433)
Q Consensus 283 G~r~G~l~~~~------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~ 351 (433)
|+|+||++++. +++ +.+.+. .......+|.++|.++.+++++..+ .++++.+..++++++.
T Consensus 233 GlRlG~~~~~~~~~~~~~l~--------~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~ 304 (388)
T PRK08637 233 GFRVGFITFGTKAGSSQTVK--------EALEKKVKGLIRSNISNGPHPSQSAVLRALNSPEFDKEKQEKFQILKERYEK 304 (388)
T ss_pred ccceEEEEEccccCCcHHHH--------HHHHHHHHHHhhcccCCCCcHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999753 342 444321 1123345789999999999986544 5677788889999999
Q ss_pred HHHHHhhc----CCeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc-ChhHHHHHHH
Q 045431 352 IVETFNSL----GFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG-HRGNVLEACK 426 (433)
Q Consensus 352 l~~~l~~~----g~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~l~~~l~ 426 (433)
+.+.|++. ++.+.+|.+|+|+|+++++.++.++...+++++||.+.+. +++++||+++. +.++++++++
T Consensus 305 ~~~~l~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~l~~~l~~~~gv~~~~~------~~~~iRi~~~~~~~~~i~~~~~ 378 (388)
T PRK08637 305 TKEVLYDGKYDDAWQAYPFNSGYFMCLKLKGVDAEELRVHLLEKYGIGTIAL------NETDLRIAFSCVEEEDIPELFD 378 (388)
T ss_pred HHHHHHhhCCCCCcccccccceEEEEecCChHHHHHHHHHHhhhcceEEEec------cCCceEEEeecCCHHHHHHHHH
Confidence 99999765 5777788899999999985456677788777779988742 35789999865 8999999999
Q ss_pred HHHHhhC
Q 045431 427 RFKHLYK 433 (433)
Q Consensus 427 ~l~~~l~ 433 (433)
+|+++++
T Consensus 379 ~l~~~~~ 385 (388)
T PRK08637 379 SIYKAIK 385 (388)
T ss_pred HHHHHHH
Confidence 9998863
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-43 Score=331.07 Aligned_cols=317 Identities=19% Similarity=0.324 Sum_probs=248.2
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR 141 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~ 141 (433)
+.++|+|+.|++++++|+.+.+++.+++.. .....|+ +.|.++||+++++|+.+.. +++++|++|+|+++++.+
T Consensus 18 ~~~~i~l~~~~~~~~~p~~~~~~~~~~~~~----~~~~~Y~-~~~~~~Lr~aia~~~~~~~-~~~~~i~it~Ga~~~i~~ 91 (335)
T PRK14808 18 KRDRTYLALNENPFPFPEDLVDEVFRRLNS----DTLRIYY-DSPDEELIEKILSYLDTDF-LSKNNVSVGNGADEIIYV 91 (335)
T ss_pred CCceeEecCCCCCCCCCHHHHHHHHHHhhh----hhhhcCC-CCChHHHHHHHHHHhCCCC-CCcceEEEcCCHHHHHHH
Confidence 457899999999999999999999987753 2233464 4589999999999996532 789999999999999998
Q ss_pred HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccC
Q 045431 142 LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAA 221 (433)
Q Consensus 142 l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~ 221 (433)
+...+ |.|++++|+|+.+...++.+| .+++.++.+.+.... + ....++++++++|||||||.+
T Consensus 92 ~~~~~---d~v~v~~P~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~-~-~~~~~~~~i~i~nP~NPTG~~ 154 (335)
T PRK14808 92 MMLMF---DRSVFFPPTYSCYRIFAKAVG------------AKFLEVPLTKDLRIP-E-VNVGEGDVVFIPNPNNPTGHV 154 (335)
T ss_pred HHHHh---CcEEECCCCHHHHHHHHHHcC------------CeEEEecCCCcCCCC-h-hHccCCCEEEEeCCCCCCCCC
Confidence 65445 679999999999999999999 478888886543221 1 122457899999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCc
Q 045431 222 ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGF 301 (433)
Q Consensus 222 ~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~ 301 (433)
+|.+++++|+ +++++||+||+|.+|.. ....++. . ..+++|+++||||++|++|+|+||++++++++
T Consensus 155 ~s~~~l~~l~----~~~~~ii~DE~Y~~f~~-~~~~~~~--~-~~~~vi~~~S~SK~~~l~GlRvG~~v~~~~~~----- 221 (335)
T PRK14808 155 FEREEIERIL----KTGAFVALDEAYYEFHG-ESYVDLL--K-KYENLAVIRTFSKAFSLAAQRIGYVVSSEKFI----- 221 (335)
T ss_pred cCHHHHHHHH----hcCCEEEEECchhhhcC-CchHHHH--H-hCCCEEEEEechhhccCcccceEEEEeCHHHH-----
Confidence 9999888886 47999999999998742 2222221 1 23589999999999999999999999998875
Q ss_pred chhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCCCCh
Q 045431 302 PVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSS 381 (433)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~~ 381 (433)
+.+.+.. ...+.+.++|.++..++++ .+++++..+.++++++.+.+.|++.|+.+.++ .|.|+|+.+++.+.
T Consensus 222 ---~~l~~~~--~~~~~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~-~g~f~~~~l~~~~~ 293 (335)
T PRK14808 222 ---DAYNRVR--LPFNVSYVSQMFAKVALDH--REIFEERTKFIVEERERMKSALREMGYRITDS-RGNFVFIFMEKEEK 293 (335)
T ss_pred ---HHHHHhc--CCCCCCHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHHCCCEECCC-CCeEEEEeCCCccH
Confidence 6665544 2355788999988888863 34567777888888999999999999887765 77899999986555
Q ss_pred HHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHh
Q 045431 382 WDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHL 431 (433)
Q Consensus 382 ~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~ 431 (433)
.++...+ .++||.++. | .+++||++ .+.++.++.++.|+++
T Consensus 294 ~~~~~~l-~~~Gi~V~~---~----~~~~Risi-~~~~~~~~~~~~l~~~ 334 (335)
T PRK14808 294 ERLLEHL-RAKNIAVRS---F----REGVRITI-GKREENDMILKELEVF 334 (335)
T ss_pred HHHHHHH-HHCCeEEEE---C----CCCeEEec-CCHHHHHHHHHHHHhh
Confidence 5555554 456999984 3 25799997 4568888998888753
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-43 Score=334.99 Aligned_cols=330 Identities=20% Similarity=0.334 Sum_probs=262.3
Q ss_pred CCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHH
Q 045431 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDIS 140 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~ 140 (433)
+..++|+|+.+.+++.+++.+.+++.+.+.. ...|++. +..+||+++|+++ ++++++|++|+|+++++.
T Consensus 30 ~~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~------~~~y~~~-~~~~lr~~ia~~~----~~~~~~i~~t~G~~~~l~ 98 (367)
T PRK02731 30 GIADIIKLASNENPLGPSPKAIEAIRAAADE------LHRYPDG-SGFELKAALAEKF----GVDPERIILGNGSDEILE 98 (367)
T ss_pred CCCceEEecCCCCCCCCCHHHHHHHHHHHHh------hcCCCCC-cHHHHHHHHHHHh----CcCHHHEEEcCCHHHHHH
Confidence 3456999999998888888888988887642 3567554 4579999999998 788899999999999998
Q ss_pred H-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEEEEcCCCC
Q 045431 141 R-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIFFCSPNN 216 (433)
Q Consensus 141 ~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~~p~n 216 (433)
+ +..++++||.|++++|+|..+.......| .+++.++.+. .+...+ ++. .+++++|+++||||
T Consensus 99 ~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g------------~~~~~~~~~~-~~~~~~~l~~~~~~~~~~v~l~~p~n 165 (367)
T PRK02731 99 LLARAYLGPGDEVIYSEHGFAVYPIAAQAVG------------AKPVEVPAKD-YGHDLDAMLAAVTPRTRLVFIANPNN 165 (367)
T ss_pred HHHHHhcCCCCEEEEecCCHHHHHHHHHHcC------------CeEEEecccC-CCCCHHHHHHHhCCCCcEEEEeCCCC
Confidence 7 47778999999999999999888788888 4777777632 222211 221 25789999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccceeeeeccccc
Q 045431 217 PTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKEL 295 (433)
Q Consensus 217 PtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~ 295 (433)
|||.+++.+++++|++.++ ++++||+||+|.++.+.+. ..++..++ ..+++++++||||.+|++|+|+||+++++++
T Consensus 166 ptG~~~~~~~l~~l~~~~~-~~~~li~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~ 243 (367)
T PRK02731 166 PTGTYLPAEEVERFLAGVP-PDVLVVLDEAYAEYVRRKDYEDGLELVA-KFPNVVVTRTFSKAYGLAGLRVGYGIAPPEI 243 (367)
T ss_pred CCCcCCCHHHHHHHHHhCC-CCcEEEEECcHHHhccCcCcccHHHHHh-hcCCEEEEeeehHhhcCcccceeeeeCCHHH
Confidence 9999999999999998875 6999999999998776543 22332222 2467999999999999999999999999887
Q ss_pred cccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEE
Q 045431 296 LFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQ 375 (433)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~ 375 (433)
+ +.+.+... ....+.++|.++.+++++ ..++++.++.++++++.+.+.|++.|+.+.+ .+|+|+|++
T Consensus 244 ~--------~~l~~~~~--~~~~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~g~~~~i~ 310 (367)
T PRK02731 244 I--------DALNRVRQ--PFNVNSLALAAAVAALDD--DAFVEKSRALNAEGMAWLTEFLAELGLEYIP-SVGNFILVD 310 (367)
T ss_pred H--------HHHHHccC--CCCCCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHCCCccCC-CCceEEEEE
Confidence 5 55554432 244688999999999974 3567888999999999999999998887764 578999999
Q ss_pred CC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 376 FP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 376 ~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
++ ..++.++...+. ++||.+.++..|+ .++++|+++. +.++++.+++.|+++++
T Consensus 311 ~~~~~~~~~~~~~L~-~~gI~v~~~~~~~--~~~~iRis~~-~~~e~~~l~~aL~~~~~ 365 (367)
T PRK02731 311 FDDGKDAAEAYQALL-KRGVIVRPVAGYG--LPNALRITIG-TEEENRRFLAALKEFLA 365 (367)
T ss_pred CCCCCCHHHHHHHHH-HCCEEEEeCCCCC--CCCeEEEecC-CHHHHHHHHHHHHHHHh
Confidence 96 446667777665 4599999998875 3579999985 67889999999988763
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=331.68 Aligned_cols=319 Identities=15% Similarity=0.235 Sum_probs=247.4
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-H
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-L 142 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l 142 (433)
..++++.+++++++++.. . .....|+++ +..+||+++|+++ ++++++|++|+|+++++.+ +
T Consensus 32 ~~~~~~~ne~~~~~~~~~-------~------~~~~~Y~~~-~~~~lr~~ia~~~----~~~~~~I~~t~G~~~~l~~~~ 93 (364)
T PRK04781 32 GDVWLNANESAWANPADP-------D------ASTRRYPDP-QPPGLRSALAALY----GCAPEQLLIGRGSDEAIDLLV 93 (364)
T ss_pred CCEEeeCCCCCCCCChhh-------c------chhccCCCC-CHHHHHHHHHHHh----CcChHHEEEeCCHHHHHHHHH
Confidence 368899998877666531 0 224567544 5799999999998 7899999999999999997 4
Q ss_pred HHhcCCC-CEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCc-cCCcccCCCC------CCCccEEEEcCC
Q 045431 143 QIVFGSN-VTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTA-ENGFFPDLST------VARTDIIFFCSP 214 (433)
Q Consensus 143 ~~l~~~g-d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~i~l~~p 214 (433)
..++.+| |.|++++|+|+.+...++..| .+++.++.+. ++++..+++. .+++++++++||
T Consensus 94 ~~~~~~g~~~vlv~~p~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~lv~l~~p 161 (364)
T PRK04781 94 RALCVPGRDAVLVTPPVFGMYAVCARLQN------------APLVEVPLVDGADGFHADVPAIVAAALASNAKLVFLCSP 161 (364)
T ss_pred HHhcCCCCCeEEEcCCChHHHHHHHHHcC------------CEEEEEecCCCccCCCcCHHHHHHHHhccCCeEEEEcCC
Confidence 6677888 799999999999988888888 4788888743 3344333221 367899999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecccc
Q 045431 215 NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKE 294 (433)
Q Consensus 215 ~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~ 294 (433)
|||||.+++.+++++++++|+ ++++||+||+|.+|.+.....++ .+ ..+++|+++||||+||+||+|+||++++++
T Consensus 162 ~NPTG~~~~~~~~~~l~~~~~-~~~~iI~Deay~~f~~~~~~~~~--~~-~~~~vi~~~SfSK~~gl~GlRvGy~v~~~~ 237 (364)
T PRK04781 162 SNPAGSAIALDQIERALQALQ-GKALVVVDEAYGEFSDVPSAVGL--LA-RYDNLAVLRTLSKAHALAAARIGSLIANAE 237 (364)
T ss_pred CCCCCCCcCHHHHHHHHHhCC-CCcEEEEeCcchhhcCCcchHHH--Hh-hCCCEEEEecChhhcccccceeeeeeCCHH
Confidence 999999999999999999885 47999999999998754222122 22 246899999999999999999999999998
Q ss_pred ccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCCccEEE
Q 045431 295 LLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAPYVW 373 (433)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~ 373 (433)
++ +.+.+... ..+.+.++|.++.+++++....+..+..+.++++++.+.+.|+++ |+....|.+|+|+|
T Consensus 238 l~--------~~l~~~~~--~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g~f~~ 307 (364)
T PRK04781 238 LI--------AVLRRCQA--PYPVPTPCAALAEQALSAPALAVTARRVAEVRAERERLHAALAQLPGVRRVYPSQGNFLL 307 (364)
T ss_pred HH--------HHHHhccC--CCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEE
Confidence 85 66665543 345788999999999986555555666678899999999999988 66544567899999
Q ss_pred EECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHh
Q 045431 374 VQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHL 431 (433)
Q Consensus 374 ~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~ 431 (433)
++++ +..++.+.+ +++||.++||..|. ..++++||++. +.++.+..++.|+++
T Consensus 308 ~~~~--~~~~~~~~l-~~~gI~v~~~~~~~-~~~~~~Ris~~-~~~~~~~l~~al~~~ 360 (364)
T PRK04781 308 VRFD--DAEAAFQAL-LAAGVVVRDQRAAP-RLSDALRITLG-TPEQNDRVLAALQRT 360 (364)
T ss_pred EEcC--CHHHHHHHH-HHCCeEEeeCCCCC-CCCCeEEEeCC-CHHHHHHHHHHHHHH
Confidence 9997 345566555 45699999998774 33679999985 567777777777654
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-42 Score=322.70 Aligned_cols=307 Identities=16% Similarity=0.200 Sum_probs=241.6
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCC-CCcEEEcCChHHHHHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIE-EGDIFVSDGAKCDISR 141 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~-~~~i~~~~G~~~al~~ 141 (433)
.++|+|+.+++++++|+....+ ..+ ..|+. .. .+||+++|+++ +++ +++|++|+|+++++.+
T Consensus 24 ~~~i~ls~Nenp~~~~~~~~~~--~~~---------~~Yp~-~~-~~L~~~ia~~~----~~~~~~~I~i~~Gs~e~i~~ 86 (339)
T PRK06959 24 DAWLDLSTGINPHGYPVPPVPA--DAW---------RRLPE-DD-DGLAACAARYY----GAPDAAHVLPVAGSQAAIRA 86 (339)
T ss_pred hhhceeccCCCCCCCCCCCCCH--HHH---------HhCCC-ch-HHHHHHHHHHh----CCCCcccEEECcCHHHHHHH
Confidence 3579999999987666222111 111 24743 33 89999999998 775 5899999999999998
Q ss_pred HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccC
Q 045431 142 LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAA 221 (433)
Q Consensus 142 l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~ 221 (433)
+..++++|| |++++|+|+.|...++..| .+++.++.+. + .+. ..++++++||||||||.+
T Consensus 87 l~~~~~~g~-v~v~~P~y~~y~~~~~~~g------------~~~~~v~~~~--~---~~~--~~~~~v~l~nPnNPTG~~ 146 (339)
T PRK06959 87 LPALLPRGR-VGIAPLAYSEYAPAFARHG------------HRVVPLDEAA--D---TLP--AALTHLIVVNPNNPTAER 146 (339)
T ss_pred HHHhcCCCe-EEEcCCCcHHHHHHHHHCC------------CEEEeecccc--h---hcc--ccCCEEEEeCCCCCCCCC
Confidence 766788887 8889999999999999999 4677777643 1 111 245789999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCc
Q 045431 222 ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGF 301 (433)
Q Consensus 222 ~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~ 301 (433)
++.+++++|++.|.+++.++|+||+|.++... .++..+.. .+++|+++||||.||++|+|+||++++++++
T Consensus 147 ~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~---~s~~~~~~-~~~vi~l~SfSK~~gl~GlRiGy~v~~~~li----- 217 (339)
T PRK06959 147 LPAARLLRWHAQLAARGGTLIVDEAFADTLPA---ASLAAHTD-RPGLVVLRSVGKFFGLAGVRAGFVLAAPALL----- 217 (339)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEECCCccCCCc---ccchhccC-CCCEEEEecChhhcCCcchheEEEecCHHHH-----
Confidence 99999999999999999999999999987643 33444332 3679999999999999999999999998885
Q ss_pred chhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCCCCh
Q 045431 302 PVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSS 381 (433)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~~ 381 (433)
+.+.+... .+..+.++|.++.++|++. .+.++.++.++++++++.+.|+++|+.+. ..++|+|++++ +.
T Consensus 218 ---~~l~~~~~--~~~vs~~~q~a~~~~L~~~--~~~~~~~~~~~~~r~~l~~~L~~~g~~~~--~~~~f~~~~~~--~~ 286 (339)
T PRK06959 218 ---AALRDALG--AWTVSGPARHAVRAAFADA--AWQAAMRERLAADGARLAALLRAHGFAVH--ATPLFSWTDDP--RA 286 (339)
T ss_pred ---HHHHHhcC--CCCCcHHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHHHHHHHCCCCcc--CcceEEEEeCC--CH
Confidence 66665543 3447889999999999753 45688899999999999999999988765 36799999986 45
Q ss_pred HHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 382 WDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 382 ~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
.++...+.+ +||.++. |+ ..+++||++..+.++++++++.|++++
T Consensus 287 ~~l~~~l~~-~GI~vr~---~~--~~~~lRisi~~~~~e~~~l~~al~~~~ 331 (339)
T PRK06959 287 AALHAALAR-RGIWTRY---FA--PPPSVRFGLPADEAEWQRLEDALAECV 331 (339)
T ss_pred HHHHHHHHh-CCeEEEE---CC--CCCeEEEECCCCHHHHHHHHHHHHHHH
Confidence 566666655 5999974 32 246899998777788888888887764
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=324.43 Aligned_cols=322 Identities=20% Similarity=0.331 Sum_probs=247.5
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-H
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-L 142 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l 142 (433)
..++|+.|++++++|+.+.+++.+.+.. .....|++ .+..+||+++|+|+ ++++++|++|+|+++++.+ +
T Consensus 23 ~~~~l~~~~~~~~~p~~~~~a~~~~~~~----~~~~~y~~-~~~~~lr~~ia~~~----~~~~~~i~it~G~~~~l~~~~ 93 (351)
T PRK14807 23 YKYKMDANETPFELPEEVIKNIQEIVKS----SQVNIYPD-PTAEKLREELARYC----SVVPTNIFVGNGSDEIIHLIM 93 (351)
T ss_pred ceeEccCCCCCCCCCHHHHHHHHHHhhc----CcccCCCC-ccHHHHHHHHHHHh----CCCcccEEEecCHHHHHHHHH
Confidence 4699999999999999999999887753 34457854 45799999999997 7889999999999999987 5
Q ss_pred HHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC---CCCccEEEEcCCCCcc
Q 045431 143 QIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST---VARTDIIFFCSPNNPT 218 (433)
Q Consensus 143 ~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~i~l~~p~nPt 218 (433)
..++++||+|++++|+|+.+...++..| .+++.++.+++.+++.+ +++ ..++++|+++||||||
T Consensus 94 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~~~~~~~k~v~l~~p~NPt 161 (351)
T PRK14807 94 LAFINKGDVVIYPHPSFAMYSVYSKIAG------------AVEIPVKLKEDYTYDVGSFIKVIEKYQPKLVFLCNPNNPT 161 (351)
T ss_pred HHhcCCCCEEEEeCCChHHHHHHHHHcC------------CeEEEeecCCCCCCCHHHHHHHhhccCCCEEEEeCCCCCC
Confidence 7778999999999999999988888888 47778877643333222 221 2378999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecccccccc
Q 045431 219 GAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFS 298 (433)
Q Consensus 219 G~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~ 298 (433)
|.+++.++++++++ +++.++|+||+|.++. +....++ ++ ..+++|+++||||++|+||+|+||++++++++
T Consensus 162 G~~~~~~~l~~l~~---~~~~~~ivDe~y~~~~-~~~~~~~--~~-~~~~vi~~~S~SK~~~~~GlRiG~~v~~~~~~-- 232 (351)
T PRK14807 162 GSVIEREDIIKIIE---KSRGIVVVDEAYFEFY-GNTIVDV--IN-EFENLIVLRTLSKAFGLAGLRVGYAVANENIL-- 232 (351)
T ss_pred CCCCCHHHHHHHHH---hCCCEEEEeCcchhhc-ccchHHH--hh-hCCCEEEEecchHhcccchhceeeeecCHHHH--
Confidence 99999777766654 5678899999998763 3222222 22 24689999999999999999999999998875
Q ss_pred CCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCCccEEEEECC
Q 045431 299 DGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAPYVWVQFP 377 (433)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~~~~~ 377 (433)
+.+..... ....+.++|.++.+++++ .++++..+.++++++.+.+.|++. |+.+.+ .+|+|+|++++
T Consensus 233 ------~~~~~~~~--~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~r~~l~~~l~~~~g~~~~~-~~~~~~~i~~~ 300 (351)
T PRK14807 233 ------KYLNLVKS--PYNINSLSQVIALKVLRT---GVLKERVNYILNERERLIKELSKIPGIKVYP-SKTNFILVKFK 300 (351)
T ss_pred ------HHHHHccC--CCCcCHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHhCCCcEECc-CCccEEEEEcC
Confidence 55554432 244788999999999974 245666778888999999999876 887654 57889999997
Q ss_pred CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 378 GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 378 ~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+..++...++ ++||.+.++..+ ...++++||+++ +.++.+.+++.|++++
T Consensus 301 --~~~~~~~~l~-~~gV~v~~~~~~-~~~~~~iRis~~-~~~~~~~l~~~l~~~~ 350 (351)
T PRK14807 301 --DADYVYQGLL-ERGILVRDFSKV-EGLEGALRITVS-SCEANDYLINGLKELL 350 (351)
T ss_pred --CHHHHHHHHH-HCCEEEEECCCC-CCCCCeEEEEcC-CHHHHHHHHHHHHHhh
Confidence 3455555555 559999876432 234679999985 4566777777777654
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=330.54 Aligned_cols=318 Identities=20% Similarity=0.257 Sum_probs=248.2
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRL 142 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l 142 (433)
...|+|+.|++++++|+.+ .. .....|++ .+.++||+++|+++ ++++++|++|+|+++++.++
T Consensus 31 ~~~~~l~~ne~~~~~~~~~------~~------~~~~~Yp~-~~~~~Lr~aia~~~----~~~~~~I~it~Gs~~~i~~~ 93 (354)
T PRK04635 31 RGDIWINANESPFNNEYKL------DL------ARLNRYPE-CQPPELINAYSAYA----GVAPEQILTSRGADEAIELL 93 (354)
T ss_pred CCcEEeeCCCCCCCCChhh------hh------HHhccCCC-CCHHHHHHHHHHHh----CcCHHHEEEeCCHHHHHHHH
Confidence 3569999999988877543 11 22456754 46899999999997 89999999999999999984
Q ss_pred -HHhcCCC-CEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCCCCCccEEEEcCCCCccc
Q 045431 143 -QIVFGSN-VTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LSTVARTDIIFFCSPNNPTG 219 (433)
Q Consensus 143 -~~l~~~g-d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~l~~p~nPtG 219 (433)
..++++| |+|++++|+|+.|...++..| .+++.++.+.+..+..+ ++..+++++|++||||||||
T Consensus 94 ~~~~~~~g~d~vlv~~P~y~~y~~~~~~~g------------~~v~~v~~~~~~~~~~~~l~~~~~~~li~i~nP~NPTG 161 (354)
T PRK04635 94 IRAFCEPGQDSIACFGPTYGMYAISAETFN------------VGVKALPLTADYQLPLDYIEQLDGAKLVFICNPNNPTG 161 (354)
T ss_pred HHHhcCCCCCeEEEcCCChHHHHHHHHHcC------------CEEEEEecCCCCCCCHHHHHhccCCCEEEEeCCCCCCC
Confidence 6777888 999999999999988888888 47888888643332222 22236889999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccC
Q 045431 220 AAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSD 299 (433)
Q Consensus 220 ~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~ 299 (433)
.+++.+++++|+++|+ +++||+||+|.+|.... +...+....+++++++||||++|++|+|+||++++++++
T Consensus 162 ~~~~~~~l~~l~~~~~--~~~vivDeay~~~~~~~---s~~~~~~~~~~~iv~~S~SK~~~l~GlRlG~~i~~~~~~--- 233 (354)
T PRK04635 162 TVIDRADIEQLIEMTP--DAIVVVDEAYIEFCPEY---SVADLLASYPNLVVLRTLSKAFALAGARCGFTLANEELI--- 233 (354)
T ss_pred ccCCHHHHHHHHHhCC--CcEEEEeCchHhhccCc---chHHHHhhCCCEEEEechHHHhhhhHHHHhhhhCCHHHH---
Confidence 9999999999999876 49999999999876432 222222224678999999999999999999999998885
Q ss_pred CcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcC-CeeecCCCccEEEEECCC
Q 045431 300 GFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLG-FKVYGGKNAPYVWVQFPG 378 (433)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~~~g~~~~~~~~~ 378 (433)
+.+.+.. .....+.+.|.++.+++.+.+.+++++.++.++++++.+.+.|++++ +.+.++ .|+|+|++++
T Consensus 234 -----~~l~~~~--~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~-~g~f~~~~~~- 304 (354)
T PRK04635 234 -----EILMRVI--APYPVPLPVSEIATQALSEAGLARMKFQVLDLNAQGARLQAALSMYGGAKVLEG-NGNYVLAKFD- 304 (354)
T ss_pred -----HHHHhhc--CCCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCceECCC-CCcEEEEECC-
Confidence 5555432 23456788888889999866556678888899999999999999985 777665 6789999987
Q ss_pred CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHh
Q 045431 379 RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHL 431 (433)
Q Consensus 379 ~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~ 431 (433)
+..++.. +++++||.++++..+ ..++++|||+ .+.++++.++++|++.
T Consensus 305 -~~~~~~~-~l~~~gv~v~~~~~~--~~~~~lRis~-~~~e~~~~l~~al~~~ 352 (354)
T PRK04635 305 -DVDAVFK-ALWDAGIVARAYKDP--RLANCIRFSF-SNRAETDKLIGLIRNQ 352 (354)
T ss_pred -CHHHHHH-HHHHCCEEEEECCCC--CCCCeEEEEe-CCHHHHHHHHHHHHHh
Confidence 3445544 456679999865432 2357999997 5789999999999764
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=328.92 Aligned_cols=316 Identities=19% Similarity=0.297 Sum_probs=248.2
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-H
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-L 142 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l 142 (433)
..|+|+.+++++++|+.+ . ......| |.....+|++++++++ ++++++|++|+|+++++.+ +
T Consensus 29 ~~~~l~~Nenp~~~~~~~--------~----~~~~~~Y-p~~~~~~l~~~~a~~~----g~~~~~I~~~~Gs~e~i~~~~ 91 (351)
T PRK01688 29 GDVWLNANEYPTAVEFQL--------T----QQTLNRY-PECQPKAVIENYAAYA----GVKPEQVLVSRGADEGIELLI 91 (351)
T ss_pred CceEecCCCCCCCCChhh--------c----ccccccC-CCCChHHHHHHHHHHh----CCCHHHEEEcCCHHHHHHHHH
Confidence 469999999988877643 1 0234567 4445689999999997 8999999999999999998 4
Q ss_pred HHhcCCC-CEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC----CCCccEEEEcCCCCc
Q 045431 143 QIVFGSN-VTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST----VARTDIIFFCSPNNP 217 (433)
Q Consensus 143 ~~l~~~g-d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~l~~p~nP 217 (433)
..++++| |.|++++|+|+.|...++..| .+++.++.+.+ +..+++. ..++++|++||||||
T Consensus 92 ~~~~~~g~~~vli~~P~y~~y~~~~~~~G------------~~~~~v~~~~~--~~~d~~~l~~~~~~~~lv~l~nPnNP 157 (351)
T PRK01688 92 RAFCEPGKDAILYCPPTYGMYSVSAETIG------------VEIRTVPTLDN--WQLDLPAIADNLDGVKVVYVCSPNNP 157 (351)
T ss_pred HHhcCCCCCEEEEcCCCHHHHHHHHHHcC------------CEEEEeecCCC--CCCCHHHHHHhccCCcEEEEeCCCCC
Confidence 6677887 999999999999999999888 47888887543 3333221 257899999999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccc
Q 045431 218 TGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLF 297 (433)
Q Consensus 218 tG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~ 297 (433)
||++++.+++++|++.|++ +.+||+||+|.+|.... +...+....+++++++||||+||++|+|+||++++++++
T Consensus 158 TG~~~~~~~l~~l~~~~~~-~~~vivDEay~~f~~~~---s~~~~~~~~~n~iv~rSfSK~~glaGlRiGy~i~~~~~i- 232 (351)
T PRK01688 158 TGNLINPQDLRTLLELTRG-KAIVVADEAYIEFCPQA---SLAGWLAEYPHLVILRTLSKAFALAGLRCGFTLANEEVI- 232 (351)
T ss_pred CCCCCCHHHHHHHHHhCCC-CcEEEEECchhhcCCCC---ChHHHHhhCCCEEEEecchHhhcCHHHHHhHHhCCHHHH-
Confidence 9999999999999999886 68899999999886432 222221224689999999999999999999999998885
Q ss_pred cCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCCccEEEEEC
Q 045431 298 SDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAPYVWVQF 376 (433)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~~~~ 376 (433)
+.+.+... .+..+.++|.++.++|.+.+.+++++.++.++++++++.+.|+++ ++....|++++|+|+++
T Consensus 233 -------~~l~~~~~--~~~v~~~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~ps~~nfi~~~~ 303 (351)
T PRK01688 233 -------NLLLKVIA--PYPLSTPVADIAAQALSPQGIAAMRERVAEINANRQWLIAALKEIPCVEQVFDSETNYILARF 303 (351)
T ss_pred -------HHHHhccC--CCCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEc
Confidence 55654432 344677888888888886555677888899999999999999988 66545567899999998
Q ss_pred CCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHH
Q 045431 377 PGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFK 429 (433)
Q Consensus 377 ~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~ 429 (433)
+ +..++...|++ +||.++++..|. ..++++||++. +.++++.++++|+
T Consensus 304 ~--~~~~l~~~L~~-~gi~vr~~~~~~-~~~~~iRis~~-~~~e~~~l~~al~ 351 (351)
T PRK01688 304 T--ASSAVFKSLWD-QGIILRDQNKQP-GLSNCLRITIG-TREECQRVIDALR 351 (351)
T ss_pred C--CHHHHHHHHHH-CCeEEEECCCcC-CCCCeEEEeCC-CHHHHHHHHHhhC
Confidence 6 45667777765 599999876552 23679999985 6788998888763
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=328.12 Aligned_cols=323 Identities=20% Similarity=0.368 Sum_probs=258.5
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR- 141 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~- 141 (433)
+++|+|+.|++++++|+.+.+++.++... ...|+++.+ ++||+++|+++ ++++++|++|+|+++++..
T Consensus 19 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~------~~~y~~~~~-~~lr~~ia~~~----~~~~~~i~~~~G~~~~l~~~ 87 (346)
T TIGR01141 19 KEVIKLNSNENPFGPPPKAKEALRAEADK------LHRYPDPDP-AELKQALADYY----GVDPEQILLGNGSDEIIELL 87 (346)
T ss_pred CceEEccCCCCCCCCCHHHHHHHHHhHHH------hhcCCCCCH-HHHHHHHHHHh----CcChHHEEEcCCHHHHHHHH
Confidence 47999999999999999999999987632 356766655 99999999998 6888999999999999986
Q ss_pred HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEEEEcCCCCcc
Q 045431 142 LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIFFCSPNNPT 218 (433)
Q Consensus 142 l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~~p~nPt 218 (433)
+..++++||+|++++|+|+.+....+..| .+++.++.+.++..+.+ +++ .+++++|++++|||||
T Consensus 88 ~~~l~~~gd~v~~~~p~y~~~~~~~~~~g------------~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~Npt 155 (346)
T TIGR01141 88 IRAFLEPGDAVLVPPPTYSMYEISAKIHG------------AEVVKVPLDEDGQLDLEDILVAIDDKPKLVFLCSPNNPT 155 (346)
T ss_pred HHHhcCCCCEEEEcCCCHHHHHHHHHHcC------------CeEEEeccCCCCCCCHHHHHHhcCCCCCEEEEeCCCCCC
Confidence 57778999999999999998888888888 47888887654222211 221 3578999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecccccccc
Q 045431 219 GAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFS 298 (433)
Q Consensus 219 G~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~ 298 (433)
|.+++.++++++++.++ +++++|+||+|+++...+.+.+... ..+++++++|+||++|++|+|+||++++++++
T Consensus 156 G~~~~~~~~~~l~~~~~-~~~~ii~D~~y~~~~~~~~~~~~~~---~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~-- 229 (346)
T TIGR01141 156 GNLLSRSDIEAVLERTP-EDALVVVDEAYGEFSGEPSTLPLLA---EYPNLIVLRTLSKAFGLAGLRIGYAIANAEII-- 229 (346)
T ss_pred CCCCCHHHHHHHHHhCC-CCcEEEEECchhhhcCCccHHHHHh---hCCCEEEEehhhHhhhchhhhceeeecCHHHH--
Confidence 99999999999999887 7999999999997665422222221 13468999999999988999999999988874
Q ss_pred CCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCCccEEEEECC
Q 045431 299 DGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAPYVWVQFP 377 (433)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~~~~~ 377 (433)
+.+..... ..+.+.++|.++.++++.. .++++.+++++++++.+.+.|+++ |+.+.+ .+|+|+|+.++
T Consensus 230 ------~~~~~~~~--~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~g~~~~~~~~ 298 (346)
T TIGR01141 230 ------DALNKVRA--PFNLSRLAQAAAIAALRDD--DFIEKTVEEINAERERLYDGLKKLPGLEVYP-SDANFVLIRFP 298 (346)
T ss_pred ------HHHHhccC--CCCCCHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHhcCCCEECC-CcCCEEEEecC
Confidence 55554332 3456889999998888754 367888999999999999999988 888654 57899999998
Q ss_pred CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHH
Q 045431 378 GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFK 429 (433)
Q Consensus 378 ~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~ 429 (433)
. ++.++...+.+ +||.+.||..|+.. ++++|+++. ++++++++++.|+
T Consensus 299 ~-~~~~~~~~L~~-~gI~v~~g~~f~~~-~~~iRls~~-~~~~i~~~~~~l~ 346 (346)
T TIGR01141 299 R-DADALFEALLE-KGIIVRDLNSYPGL-PNCLRITVG-TREENDRFLAALR 346 (346)
T ss_pred C-CHHHHHHHHHH-CCeEEEeCCCcCCC-CCeEEEecC-CHHHHHHHHHHhC
Confidence 6 66677776665 59999999988544 789999975 7889999988763
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=319.78 Aligned_cols=305 Identities=17% Similarity=0.212 Sum_probs=233.9
Q ss_pred ceEEecCCCCCCCChH-HHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHH
Q 045431 64 EVISLGIGDTTEPIPE-VITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRL 142 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l 142 (433)
++|+|+.+++++++|+ .+.+ ..+ ..|+. +..+||++|++++ + +++|++|+|++++|.++
T Consensus 21 ~~i~l~~ne~p~~~~~~~~~~---~~~---------~~yp~--~~~~Lr~~ia~~~----~--~~~I~it~Gs~~al~~~ 80 (330)
T PRK05664 21 DWLDLSTGIAPWPWPVPAIPA---DAW---------ARLPE--TDDGLEAAARAYY----G--APQLLPVAGSQAAIQAL 80 (330)
T ss_pred HheeecCCcCCCCCCCcccCH---HHH---------HhCCC--ChHHHHHHHHHHh----C--CCCEEECcCHHHHHHHH
Confidence 5799999987765542 2211 111 23533 4489999999997 4 47999999999999986
Q ss_pred HHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCC
Q 045431 143 QIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAA 222 (433)
Q Consensus 143 ~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~ 222 (433)
. .+.+||+|++++|+|+.+...++.+| .+++.++.+.. .. ...++++++++|||||||.++
T Consensus 81 ~-~~~~gd~v~v~~P~y~~~~~~~~~~g------------~~~~~v~~~~~---~~---~~~~~~~v~l~nP~NPTG~~~ 141 (330)
T PRK05664 81 P-RLRAPGRVGVLSPCYAEHAHAWRRAG------------HQVRELDEAEV---EA---ALDSLDVLVVVNPNNPTGRRF 141 (330)
T ss_pred H-HccCCCEEEEcCCChHHHHHHHHHcC------------CeEEEechhhH---hh---hhcCCCEEEEeCCcCCCCCcc
Confidence 4 45899999999999999999999999 47777776421 11 123678899999999999999
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcc
Q 045431 223 TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFP 302 (433)
Q Consensus 223 ~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~ 302 (433)
+.+++++|+++|++++++||+||+|.++.. ..++.+++. .+++++++||||++|+||+|+||++++++++
T Consensus 142 s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~---~~s~~~~~~-~~~vi~~~SfSK~~gl~GlRiG~~v~~~~l~------ 211 (330)
T PRK05664 142 DPARLLAWHARLAARGGWLVVDEAFMDNTP---QHSLAACAH-RPGLIVLRSFGKFFGLAGARLGFVLAEPALL------ 211 (330)
T ss_pred CHHHHHHHHHHHHhcCCEEEEECCcccCCC---ccccccccc-CCCEEEEeeccccccCCCcceEEEEeCHHHH------
Confidence 999999999999999999999999987642 234555543 4689999999999999999999999998875
Q ss_pred hhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCCCChH
Q 045431 303 VAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSW 382 (433)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~ 382 (433)
+.+..... .+..+.++|.++.++|.+. .+.++.++.++++++.+.+.|+++|+...+ ..++|+|++++ ++.
T Consensus 212 --~~~~~~~~--~~~~~~~~~~~~~~~L~~~--~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~~~~f~~~~~~--~~~ 282 (330)
T PRK05664 212 --RALAELLG--PWTVSGPTRWLAQAALADT--PWQRRQRERLLAASQRLAALLRRHGLTPAG-GCALFQWVRTE--DAA 282 (330)
T ss_pred --HHHHHhcC--CCCCCHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHHHHHHHHHCCCcccC-CcceEEEEecC--CHH
Confidence 55654432 3356889999999999753 445778899999999999999998765322 23478999875 455
Q ss_pred HHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 383 DVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 383 ~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
++...+. ++||.+.+ |+ ..+++||++..+.++++++++.|+++.
T Consensus 283 ~~~~~l~-~~gi~v~~---f~--~~~~iRis~~~~~~~~~~l~~al~~~~ 326 (330)
T PRK05664 283 ALHEFLA-RRGILTRL---FE--QPASLRFGLPADEADWARLDQALLAYR 326 (330)
T ss_pred HHHHHHH-HCCeEEEE---CC--CCCeEEEECCCCHHHHHHHHHHHHHHH
Confidence 6666654 56999974 43 347999998766667777777776553
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=324.53 Aligned_cols=323 Identities=22% Similarity=0.342 Sum_probs=252.2
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEE-cCChHHHHHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFV-SDGAKCDISR 141 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~-~~G~~~al~~ 141 (433)
.++|+|+.|++++++++.+.+++.+.+.. ...|+++ ..++||+++|+++ ++++++|++ |+|+++++.+
T Consensus 34 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~------~~~y~~~-~~~~lr~~ia~~~----~~~~~~i~~~~~Ga~~~i~~ 102 (361)
T PRK00950 34 ESIIKLGSNENPLGPSPKAVEAIEKELSK------IHRYPEP-DAPELREALSKYT----GVPVENIIVGGDGMDEVIDT 102 (361)
T ss_pred cceEEccCCCCCCCCCHHHHHHHHHHHHh------hcCCCCC-CHHHHHHHHHHHh----CCCHHHEEEeCCCHHHHHHH
Confidence 47899999999888888889888887643 2457554 4499999999998 888999999 7999999987
Q ss_pred -HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEEEEcCCCCc
Q 045431 142 -LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIFFCSPNNP 217 (433)
Q Consensus 142 -l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~~p~nP 217 (433)
+..++++||+|++++|+|+.+...++..| .+++.++.+.+.....+ +++ ..+++++++++||||
T Consensus 103 ~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~p~np 170 (361)
T PRK00950 103 LMRTFIDPGDEVIIPTPTFSYYEISAKAHG------------AKPVYAKREEDFSLDVDSVLNAITEKTKVIFLCTPNNP 170 (361)
T ss_pred HHHHhcCCCCEEEEcCCChHHHHHHHHHcC------------CEEEEeecCCCCCcCHHHHHHHhccCCCEEEEeCCCCC
Confidence 46677999999999999999988888888 47777775433222211 221 257889999999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccc
Q 045431 218 TGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLF 297 (433)
Q Consensus 218 tG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~ 297 (433)
||.+++.+++.+| |+++|+++|+||+|.++. .....++. + ..+++++++||||++|++|+|+||++++++++
T Consensus 171 tG~~~~~~~l~~l---~~~~~~~li~De~y~~~~-~~~~~~~~--~-~~~~vi~~~S~SK~~g~~GlRiG~~~~~~~~~- 242 (361)
T PRK00950 171 TGNLIPEEDIRKI---LESTDALVFVDEAYVEFA-EYDYTPLA--L-EYDNLIIGRTFSKVFGLAGLRIGYGFVPEWLI- 242 (361)
T ss_pred CCCCcCHHHHHHH---HHHCCcEEEEECchhhhC-ccchHHHH--H-hcCCEEEEEeehHhhcCchhhcchhcCCHHHH-
Confidence 9999997665555 567899999999999875 22222221 1 23578999999999999999999999998875
Q ss_pred cCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECC
Q 045431 298 SDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFP 377 (433)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~ 377 (433)
+.+.+... ....+.++|.++.+++++ ..++++.++.++++++.+.+.|. +.+. +.+++|+|++++
T Consensus 243 -------~~~~~~~~--~~~~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~r~~l~~~l~---~~~~-~~~~~~i~~~~~ 307 (361)
T PRK00950 243 -------DYYMRAKT--PFSLTRLSQAAAIAALSD--KEYIEKSIEHGIKSREYLYNELP---FKVY-PSEANFVLVDVT 307 (361)
T ss_pred -------HHHHHhcC--CCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHhhcC---eeEC-CCcceEEEEECC
Confidence 55554432 344778899988888874 34577888888888888888776 4544 468899999997
Q ss_pred CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 378 GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 378 ~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
+.+..++...+.+ +||.+.||..|+..+++++||++. +.+++++++++|+++++
T Consensus 308 ~~~~~~~~~~l~~-~gv~v~~~~~f~~~~~~~lRis~~-~~~~~~~l~~~L~~il~ 361 (361)
T PRK00950 308 PMTAKEFCEELLK-RGVIVRDCTSFRGLGDYYIRVSIG-TFEENERFLEILKEIVE 361 (361)
T ss_pred CCCHHHHHHHHHH-CCEEEeeCCccCCCCCCeEEEECC-CHHHHHHHHHHHHHHhC
Confidence 6677788888765 499999999886556789999986 67799999999998874
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=303.09 Aligned_cols=315 Identities=22% Similarity=0.324 Sum_probs=262.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhc----cCCCCCCcEEEcCChHHHHHHH-HHhcCCCCEEEEeCCCChhhhhhHHHhCCc
Q 045431 98 YSGYGAEQGEKPLRAAIASTFYK----DLGIEEGDIFVSDGAKCDISRL-QIVFGSNVTMAVQDPSYPAYVDSSVIMGQT 172 (433)
Q Consensus 98 ~~~Y~~~~g~~~lr~~la~~l~~----~~~~~~~~i~~~~G~~~al~~l-~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~ 172 (433)
+..|.+-.|.+.+|+++|+++.+ ....+|+++++++|++.+.+++ ..+++|||..+++.|.|+++..-++...
T Consensus 114 la~fqdy~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLadpgdafLvPtPyY~gfdrdl~~rT-- 191 (471)
T KOG0256|consen 114 LAMFQDYHGLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLADPGDAFLVPTPYYPGFDRDLRWRT-- 191 (471)
T ss_pred HhhcccccCchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhcCCCceeeecCCCCCcccccceecc--
Confidence 44677778999999999999975 3445899999999999999985 7788999999999999999976665543
Q ss_pred ccccccccccceEEEeecCccCCcccCCCC-----------CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEE
Q 045431 173 GEFQKDAEKYGKIEYMRCTAENGFFPDLST-----------VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSII 241 (433)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~l 241 (433)
| .+++++.+...+++..+.++ ..+++.++++||+||.|++++++++..++++|.++++.+
T Consensus 192 g---------veivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHv 262 (471)
T KOG0256|consen 192 G---------VEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHV 262 (471)
T ss_pred C---------ceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEE
Confidence 2 48888888877776665332 247899999999999999999999999999999999999
Q ss_pred EEeccccccccCCC-CCcccccCC----CCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccC
Q 045431 242 VYDSAYALYISDDN-PRSIFEIPG----AKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFN 316 (433)
Q Consensus 242 i~De~~~~~~~~~~-~~~~~~~~~----~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (433)
|+||+|+.-+|+.. ..++.++.. .+++|.++.|+||.+|+||+|+|.+...++.+ .....++ .+..
T Consensus 263 I~DEIya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne~V-------vsaA~km--ssf~ 333 (471)
T KOG0256|consen 263 ISDEIYAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDV-------VSAATKM--SSFG 333 (471)
T ss_pred EeehhhcccccCccCceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecChHH-------HHHHHHH--hhcc
Confidence 99999999888764 566655421 36789999999999999999999999887775 3333332 3455
Q ss_pred CCcHHHHHHHHHhcCcCCh--hHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCC-------CChHHHHHH
Q 045431 317 GASNISQAGGLACLSPEGF--KAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPG-------RSSWDVFSE 387 (433)
Q Consensus 317 ~~~~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~-------~~~~~~~~~ 387 (433)
..|+..|..+..+|.+... .++.+..++++.+.+++.+.|+++|+.+.+..+|+|+|+++.+ ....++...
T Consensus 334 ~vSs~tQ~~la~LLSD~~f~~~yl~en~~Rl~~rh~~~~~gLk~lgI~cl~s~AGlF~wvDlr~lL~s~tfe~El~Lw~~ 413 (471)
T KOG0256|consen 334 LVSSQTQYLLASLLSDEEFTREYLRENNKRLRIRHRYIVEGLKALGIPCLKSNAGLFCWVDLRKLLTSLTFEGELELWER 413 (471)
T ss_pred CCcHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCceeecCCeeEEEEEhHHhcCcCChHHHHHHHHH
Confidence 6899999999999997554 5789999999999999999999999999999999999999872 123467778
Q ss_pred HHHcCCeEecCCCCCCCCCCCeEEEeeccC-hhHHHHHHHHHHHhh
Q 045431 388 ILEKTHVVTTPGSGFGPGGEGFIRVSAFGH-RGNVLEACKRFKHLY 432 (433)
Q Consensus 388 l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~-~~~l~~~l~~l~~~l 432 (433)
++.+-++-+.||..|....+||||++|+.. ++.++-+++||++.+
T Consensus 414 i~~~vklnlSpG~s~~C~EpGWFRvcFAn~~~~t~~~am~Ri~~~~ 459 (471)
T KOG0256|consen 414 ILDNVKLNLSPGSSCHCHEPGWFRVCFANMSEETLEVAMRRLKQFL 459 (471)
T ss_pred HHHhhccccCCCCcceecCCCeEEEEeccCCHHHHHHHHHHHHHHH
Confidence 887779999999999888899999999875 555555999999875
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-41 Score=317.23 Aligned_cols=311 Identities=21% Similarity=0.337 Sum_probs=234.7
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRL 142 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l 142 (433)
.++|+|+.+++++++|+.+.+++.+++.. .....|+ ..|.++||+++++|+ ++++++|++|+|+++++.++
T Consensus 18 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Y~-~~g~~~lr~~ia~~~----~~~~~~I~~t~G~~~~l~~~ 88 (337)
T PRK03967 18 NYRIWLDKNENPFDLPEELKEEIFEELKR----VPFNRYP-HITSDPLREAIAEFY----GLDAENIAVGNGSDELISYL 88 (337)
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHHhhc----CccccCC-CCCHHHHHHHHHHHh----CcCcceEEEcCCHHHHHHHH
Confidence 35799999999988889999999888753 2345785 579999999999998 78999999999999999986
Q ss_pred HHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CC-CCCCccEEEEcCCCCcccc
Q 045431 143 QIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LS-TVARTDIIFFCSPNNPTGA 220 (433)
Q Consensus 143 ~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~i~l~~p~nPtG~ 220 (433)
...+ +||+|++++|+|+.+....+..| .+++.++.+.+.+.+.+ ++ ...++++++++|||||||.
T Consensus 89 ~~~~-~gd~V~v~~P~y~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~~~~~~~v~~~~P~NPtG~ 155 (337)
T PRK03967 89 VKLF-EGKHIVITPPTFGMYSFYAKLNG------------IPVIDVPLKEDFTIDGERIAEKAKNASAVFICSPNNPTGN 155 (337)
T ss_pred HHHh-CCCeEEEeCCChHHHHHHHHHcC------------CeEEEeecCCCCCcCHHHHHHhccCCCEEEEeCCCCCCCC
Confidence 5555 79999999999999888888888 47888887643222221 22 1357889999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCC
Q 045431 221 AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDG 300 (433)
Q Consensus 221 ~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~ 300 (433)
+++.+++.+++ +++++||+||+|.+|... ...++. ...+++|+++||||.||++|+|+||++++++++
T Consensus 156 ~~~~~~l~~i~----~~~~~ii~De~y~~~~~~-~~~~~~---~~~~~vi~l~S~SK~~~l~GlRiG~iv~~~~~i---- 223 (337)
T PRK03967 156 LQPEEEILKVL----ETGKPVVLDEAYAEFSGK-SLIGLI---DEYPNLILLRTFSKAFGLAGIRAGYAIANEEII---- 223 (337)
T ss_pred CCCHHHHHHHH----hcCCEEEEECchhhhccc-chHHHH---hhCCCEEEEecchHhhcchhhhheeeecCHHHH----
Confidence 99977666654 479999999999987532 111221 124579999999999999999999999998875
Q ss_pred cchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCCCC
Q 045431 301 FPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRS 380 (433)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~ 380 (433)
+.+.+... ..+.+.++|.++..++++ .+++.+.++.+.++++.+.+.|.+. ..+.+++|+|++++
T Consensus 224 ----~~~~~~~~--~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~----~~~~~~~~~~~~~~--- 288 (337)
T PRK03967 224 ----DALYRIKP--PFSLNILTMKIVRLALDH--YDLIEERIDYIIKERERVRRELGEY----AYPSDANFLLLKLD--- 288 (337)
T ss_pred ----HHHHhhcC--CCCCCHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHhccC----cCCCCCcEEEEhHH---
Confidence 66665443 345789999999988874 3345556666677788888888764 23578999999874
Q ss_pred hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc--ChhHHHHHHHHHH
Q 045431 381 SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG--HRGNVLEACKRFK 429 (433)
Q Consensus 381 ~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~--~~~~l~~~l~~l~ 429 (433)
+...+++ +||.++++.. ...+++||++.. +.+++.++++++.
T Consensus 289 ---~~~~l~~-~gi~v~~~~~---~~~~~~Ri~~~~~~~~~~l~~~l~~~~ 332 (337)
T PRK03967 289 ---AYDYLLE-NGIVVRKLSG---RLEGHIRVTVGKREENDEFIKALKEIK 332 (337)
T ss_pred ---HHHHHHH-CCEEEEeCCC---CCCCeEEEecCCHHHHHHHHHHHHHHH
Confidence 4555555 5999987642 235799999854 2344555555443
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=321.19 Aligned_cols=322 Identities=23% Similarity=0.346 Sum_probs=251.1
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-H
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-L 142 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l 142 (433)
.+|+|+.+.+++++|+.+.+++.+.+.. ...| +..|..+||+++|+++ ++++++|++|+|+++++.+ +
T Consensus 23 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~------~~~y-~~~g~~~lr~~ia~~~----~~~~~~I~~~~G~~~~l~~~~ 91 (352)
T PRK03321 23 GAIKLSSNETPFGPLPSVRAAIARAAAG------VNRY-PDMGAVELRAALAEHL----GVPPEHVAVGCGSVALCQQLV 91 (352)
T ss_pred cceeccCCCCCCCCCHHHHHHHHHHHHh------cCcC-CCCcHHHHHHHHHHHh----CcCHHHEEECCCHHHHHHHHH
Confidence 5899999999988888999999887642 3457 4579999999999998 7888999999999999987 4
Q ss_pred HHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEEEEcCCCCccc
Q 045431 143 QIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIFFCSPNNPTG 219 (433)
Q Consensus 143 ~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~~p~nPtG 219 (433)
..++++||.|+++.|+|..+...++..| .+++.++.+++.+...+ +++ .++++++++++||||||
T Consensus 92 ~~~~~~gd~Vli~~p~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG 159 (352)
T PRK03321 92 QATAGPGDEVIFAWRSFEAYPILVQVAG------------ATPVQVPLTPDHTHDLDAMAAAITDRTRLIFVCNPNNPTG 159 (352)
T ss_pred HHhcCCCCEEEeCCCCHHHHHHHHHHcC------------CEEEEccCCCCCCCCHHHHHHhhccCCCEEEEeCCCCCcC
Confidence 6778999999999999999888888888 47788887643333222 211 25789999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCC-CcccccCCCCcceEEEecccccccccccceeeeecccccccc
Q 045431 220 AAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNP-RSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFS 298 (433)
Q Consensus 220 ~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~-~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~ 298 (433)
.+++.+++.++++.+ +++++||+||+|.++.+++.. .++..++. .+++++++||||.+|++|+|+||++++++++
T Consensus 160 ~~~~~~~l~~l~~~~-~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~-- 235 (352)
T PRK03321 160 TVVTPAELARFLDAV-PADVLVVLDEAYVEYVRDDDVPDGLELVRD-HPNVVVLRTFSKAYGLAGLRVGYAVGHPEVI-- 235 (352)
T ss_pred CCcCHHHHHHHHHhC-CCCeEEEEechHHHhccCcCCCcHHHHHhh-CCCEEEEecchHHhhhHHHhhhhhcCCHHHH--
Confidence 999988888888765 479999999999998876532 33333332 4689999999999999999999999998875
Q ss_pred CCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCC
Q 045431 299 DGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPG 378 (433)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~ 378 (433)
+.+.+. ....+.+.++|.++.+++... ..+. +..+.+.++++.+.+.|++.|+.+.+ .+|+|+|++++.
T Consensus 236 ------~~~~~~--~~~~~~s~~~q~~a~~~l~~~-~~~~-~~~~~~~~~r~~~~~~L~~~~~~~~~-~~g~~i~i~l~~ 304 (352)
T PRK03321 236 ------AALRKV--AVPFSVNSLAQAAAIASLAAE-DELL-ERVDAVVAERDRVRAALRAAGWTVPP-SQANFVWLPLGE 304 (352)
T ss_pred ------HHHHHh--cCCCCCCHHHHHHHHHHhcCH-HHHH-HHHHHHHHHHHHHHHHHHHCCCccCC-CCCCEEEEeCCC
Confidence 566544 234568999999888888732 2333 34445556677889999988877644 578999999863
Q ss_pred CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 379 RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 379 ~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
...++...+ +++||.+.+ |+ ..++||++ .+.+++++++++|++++
T Consensus 305 -~~~~~~~~l-~~~gI~v~~---~~---~~~iRi~~-~~~~~~~~~~~al~~~~ 349 (352)
T PRK03321 305 -RTADFAAAA-AEAGVVVRP---FA---GEGVRVTI-GAPEENDAFLRAARAWR 349 (352)
T ss_pred -CHHHHHHHH-HHCCEEEEc---cC---CCcEEEee-CCHHHHHHHHHHHHHHh
Confidence 456666665 556999987 43 34699997 67888999999988765
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=318.30 Aligned_cols=313 Identities=19% Similarity=0.289 Sum_probs=245.8
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR 141 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~ 141 (433)
++++++|+.|.+++++| ..+ ... .....|+++.+ ++||+.+++++ ++++++|++|+|+++++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~--~~~---~~~------~~~~~y~~~~~-~~lr~~la~~~----~~~~~~i~~t~G~~~~i~~ 79 (330)
T TIGR01140 16 PEDWLDFSTGINPLGPP--VPP---IPA------SAWARYPDPEY-DELRAAAAAYY----GLPAASVLPVNGAQEAIYL 79 (330)
T ss_pred hhheeEccccCCCCCCC--hhh---cch------HHHhhCCCccH-HHHHHHHHHHh----CCChhhEEECCCHHHHHHH
Confidence 44689999999887766 111 111 33457866665 99999999998 7888999999999999998
Q ss_pred HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccC
Q 045431 142 LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAA 221 (433)
Q Consensus 142 l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~ 221 (433)
+..++.+| .|++++|+|..+...++..| .+++.++ +.+ .+... ..+++++++++||||||.+
T Consensus 80 ~~~~l~~g-~vl~~~p~y~~~~~~~~~~g------------~~~~~~~-d~~-~l~~~---~~~~~~v~i~~p~NPtG~~ 141 (330)
T TIGR01140 80 LPRLLAPG-RVLVLAPTYSEYARAWRAAG------------HEVVELP-DLD-RLPAA---LEELDVLVLCNPNNPTGRL 141 (330)
T ss_pred HHHHhCCC-eEEEeCCCcHHHHHHHHHcC------------CEEEEeC-CHH-HHHhh---cccCCEEEEeCCCCCCCCC
Confidence 76667888 79999999999999998888 4666666 221 22211 2457789999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCc
Q 045431 222 ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGF 301 (433)
Q Consensus 222 ~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~ 301 (433)
++.+++++|+++|+++|++||+||+|.++.... ++..+....+++++++||||++|++|+|+||++++++++
T Consensus 142 ~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~---~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~----- 213 (330)
T TIGR01140 142 IPPETLLALAARLRARGGWLVVDEAFIDFTPDA---SLAPQAARFPGLVVLRSLTKFFGLAGLRLGFVVAHPALL----- 213 (330)
T ss_pred CCHHHHHHHHHHhHhcCCEEEEECcccccCCcc---chhhHhccCCCEEEEEecchhhcCchhhhhheeCCHHHH-----
Confidence 999999999999999999999999999876542 233322224679999999999999999999999998874
Q ss_pred chhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcC-CeeecCCCccEEEEECCCCC
Q 045431 302 PVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLG-FKVYGGKNAPYVWVQFPGRS 380 (433)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~~~g~~~~~~~~~~~ 380 (433)
+.+..... ....+.++|.++.+++++. .+.++.++.++++++.+.+.|++++ +.+. +.+|+|+|++++.
T Consensus 214 ---~~l~~~~~--~~~~s~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~f~~~~~~~-- 283 (330)
T TIGR01140 214 ---ARLREALG--PWTVNGPARAAGRAALADT--AWQAATRARLAAERARLAALLARLGGLEVV-GGTALFLLVRTPD-- 283 (330)
T ss_pred ---HHHHhcCC--CCCchHHHHHHHHHHHhch--HHHHHHHHHHHHHHHHHHHHHHhCCCceEC-CCCCeEEEEEcCC--
Confidence 55554432 3457889999999999754 3457788999999999999999986 5554 4588999999873
Q ss_pred hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHH
Q 045431 381 SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRF 428 (433)
Q Consensus 381 ~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l 428 (433)
..++.+.+++ +||.+.||..|...+.+++||+++...++ +.++++|
T Consensus 284 ~~~l~~~l~~-~gi~v~pg~~f~~~~~~~iRi~~~~~~~~-~~~~~~l 329 (330)
T TIGR01140 284 AAALHEALAR-RGILIRDFDNFPGLDPRYLRFALPTDEEN-DRLEEAL 329 (330)
T ss_pred HHHHHHHHHH-CCEEEEECCCCCCCCCCEEEEEecCHHHH-HHHHHhh
Confidence 5677777766 59999999999644567999999776655 7777765
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=304.86 Aligned_cols=300 Identities=16% Similarity=0.281 Sum_probs=219.5
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQ 143 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l~ 143 (433)
++|+|+.++++++ |+.+.+++.+++.. ...|+ ....||+++++++ + ++|++|+|+++++.++.
T Consensus 9 ~~i~l~~~~np~~-p~~~~~a~~~~~~~------~~~yp---~~~~l~~~ia~~~----~---~~I~vt~G~~~al~~~~ 71 (311)
T PRK08354 9 GLIDFSASVNPYP-PEWLDEMFERAKEI------SGRYT---YYEWLEEEFSKLF----G---EPIVITAGITEALYLIG 71 (311)
T ss_pred ceeEecCCCCCCC-CHHHHHHHHHHHHH------hhcCC---ChHHHHHHHHHHH----C---CCEEECCCHHHHHHHHH
Confidence 5899999988775 57888888877542 23563 2578999999987 4 58999999999999865
Q ss_pred HhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCC
Q 045431 144 IVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAAT 223 (433)
Q Consensus 144 ~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~ 223 (433)
.++.+||+|++++|+|+.+...++..|. +++.++.+.+ .+. . ...++++++++|||||||.+++
T Consensus 72 ~~~~~gd~vlv~~P~y~~~~~~~~~~g~------------~~~~~~~d~~-~l~-~--~~~~~~~vi~~~P~NPTG~~~~ 135 (311)
T PRK08354 72 ILALRDRKVIIPRHTYGEYERVARFFAA------------RIIKGPNDPE-KLE-E--LVERNSVVFFCNPNNPDGKFYN 135 (311)
T ss_pred HhhCCCCeEEEeCCCcHHHHHHHHHcCC------------EEeecCCCHH-HHH-H--hhcCCCEEEEecCCCCCCCccC
Confidence 6666999999999999999999999994 6655554322 111 1 1125678899999999999999
Q ss_pred HHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcch
Q 045431 224 REQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPV 303 (433)
Q Consensus 224 ~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~ 303 (433)
.+++++|+++|+++|++||+||+|.+|.+++.. .. .+++++++||||++|+||+|+||+++ .
T Consensus 136 ~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~-----~~--~~~vi~~~S~SK~~~l~GlRiG~~v~---~-------- 197 (311)
T PRK08354 136 FKELKPLLDAVEDRNALLILDEAFIDFVKKPES-----PE--GENIIKLRTFTKSYGLPGIRVGYVKG---F-------- 197 (311)
T ss_pred HHHHHHHHHHhhhcCcEEEEeCcchhccccccc-----cC--CCcEEEEeccHhhcCCccceeeeeee---h--------
Confidence 999999999999999999999999998876421 11 46899999999999999999999998 3
Q ss_pred hHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCCCChHH
Q 045431 304 AKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSWD 383 (433)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~ 383 (433)
.+.+..... .+..+.+.|.++.++++ ...+++++.++.++++++.+.+.+ ..++ .+.|+|++++ ++.+
T Consensus 198 ~~~l~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l------~~~~-~~~~~~~~~~--~~~~ 265 (311)
T PRK08354 198 EEAFRSVRM--PWSIGSTGYAFLEFLIE-DDFEHLRKTMPLIWREKERFEKAL------YVKS-DANFFIKDVG--DAEK 265 (311)
T ss_pred HHHHHHcCC--CccCCHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHhc------CCCC-CCcEEEEECC--CHHH
Confidence 244544332 33456677777766666 333555666666666665554443 1234 4566667765 4556
Q ss_pred HHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHH
Q 045431 384 VFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKH 430 (433)
Q Consensus 384 ~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~ 430 (433)
+.+.+. ++||.+.||..|+. ++++||++.. .++.+++++.|++
T Consensus 266 ~~~~l~-~~gv~v~~g~~f~~--~~~iRi~~~~-~~~~~~l~~al~~ 308 (311)
T PRK08354 266 FVEFLK-RNGILVRDCTSFGL--PGYIRFSVRD-REENEKLIRALRE 308 (311)
T ss_pred HHHHHH-HCCeEEEecccCCC--CCeEEEEeCC-HHHHHHHHHHHHH
Confidence 666654 56999999999963 5899999864 3344444444444
|
|
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=298.87 Aligned_cols=314 Identities=21% Similarity=0.302 Sum_probs=253.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhc---cCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCc
Q 045431 97 GYSGYGAEQGEKPLRAAIASTFYK---DLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQT 172 (433)
Q Consensus 97 ~~~~Y~~~~g~~~lr~~la~~l~~---~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~ 172 (433)
...+|++..|.++|...+.++..- .......+|++|+|.+.++.. +..++++||.|+++.++|++.....+..|
T Consensus 92 ~alQYg~s~G~peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~AL~s~~a~g-- 169 (472)
T KOG0634|consen 92 RALQYGQSSGIPELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPSALQSMEALG-- 169 (472)
T ss_pred hhhccccccCcHHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHhhcCCCceEEecccchHHHHhccccC--
Confidence 456999999999999999996531 222345699999999999996 78899999999999999999998888888
Q ss_pred ccccccccccceEEEeecCccCCcccCCCC-----------CCCccEEEEcCC--CCccccCCCHHHHHHHHHHHHHcCC
Q 045431 173 GEFQKDAEKYGKIEYMRCTAENGFFPDLST-----------VARTDIIFFCSP--NNPTGAAATREQLTRLVQFAKDNGS 239 (433)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~i~l~~p--~nPtG~~~~~~~~~~i~~~a~~~~~ 239 (433)
++++++++|.++-..+.+++ .++++++| |-| |||||.+++.+++++|.++|+||++
T Consensus 170 ----------v~~ipv~md~~Gi~pE~l~~il~~w~~~~~k~~~p~vlY-TIPTgqNPTG~tls~errk~iy~LArKyDf 238 (472)
T KOG0634|consen 170 ----------VKIIPVKMDQDGIDPESLEEILSNWKPGSYKKPKPHVLY-TIPTGQNPTGNTLSLERRKKIYQLARKYDF 238 (472)
T ss_pred ----------ceEEeccccCCCCCHHHHHHHHhcCCcccccCCCCeEEE-eCcCCCCCCCCccCHHHHHHHHHHHHHcCE
Confidence 58888888765433222321 24566555 545 9999999999999999999999999
Q ss_pred EEEEeccccccccCC---C------C-----------CcccccCCCCcceEEEecccccccccccceeeeeccccccccC
Q 045431 240 IIVYDSAYALYISDD---N------P-----------RSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSD 299 (433)
Q Consensus 240 ~li~De~~~~~~~~~---~------~-----------~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~ 299 (433)
+||+||.|..+.+.. . + +++.++|. .+|||-..||||.++ ||+|+||+.+++-++
T Consensus 239 LIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDt-dGrVIr~dSFSKiia-PGlRlG~it~~~~~l--- 313 (472)
T KOG0634|consen 239 LIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDT-DGRVIRNDSFSKIIA-PGLRLGWITGNSLFL--- 313 (472)
T ss_pred EEEecCccceeeccccCCCccccCccccHHHHHHhhcCCcccccc-cccEEeccchhhhhc-CcceeEEeecCHHHH---
Confidence 999999999776652 1 1 12233443 579999999999997 999999999999886
Q ss_pred CcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh----hHHHHHHHHHHHHHHHHHHHHhhc---C-CeeecCCCccE
Q 045431 300 GFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF----KAVHEVIGFYKENTDIIVETFNSL---G-FKVYGGKNAPY 371 (433)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~----~~~~~~~~~~~~~~~~l~~~l~~~---g-~~~~~~~~g~~ 371 (433)
+++.+....++.++|.++|.+..++|+..+. +|+.+++..|..|++.+..+|.++ + .++.+|.+|+|
T Consensus 314 -----~ril~~ae~~t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~aGmF 388 (472)
T KOG0634|consen 314 -----KRILDLAEVATSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPKAGMF 388 (472)
T ss_pred -----HHHhhhcceeecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCcceE
Confidence 6777667777777999999988888875443 799999999999999999999886 4 67889999999
Q ss_pred EEEECC--------CCC-hHHHHHHHHHcCCeEecCCCCCCCC-----CCCeEEEee-ccChhHHHHHHHHHHHhhC
Q 045431 372 VWVQFP--------GRS-SWDVFSEILEKTHVVTTPGSGFGPG-----GEGFIRVSA-FGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 372 ~~~~~~--------~~~-~~~~~~~l~~~~gi~v~~g~~f~~~-----~~~~iRi~~-~~~~~~l~~~l~~l~~~l~ 433 (433)
+|++++ ..+ .++....++.++||.+.+|..|... ++-++|+++ +.+.++++++++|+..+++
T Consensus 389 iwv~i~~~~~~~~~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a~a~~e~l~~g~~rf~~~ik 465 (472)
T KOG0634|consen 389 IWVEIPYINFDTKKSINQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSIAFAEPEKLDEGIERFGSVIK 465 (472)
T ss_pred EEEEecccccccccchHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcceEEEEeecCCHHHHHHHHHHHHHHHH
Confidence 999996 122 4566677777889999999999643 234999997 4588999999999988764
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=283.25 Aligned_cols=339 Identities=32% Similarity=0.540 Sum_probs=270.0
Q ss_pred EEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHHHHH-H
Q 045431 66 ISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDISR-L 142 (433)
Q Consensus 66 i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~al~~-l 142 (433)
|+|+.|++++..++...+++.+. .. ......|++..|..++++.+++++.. +....++++++++|+++++.. +
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~ 76 (350)
T cd00609 1 IDLSIGEPDFPPPPEVLEALAAA--AL--RAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLL 76 (350)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHH--hh--ccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHH
Confidence 57899998877777777666651 11 14556788899999999999999975 333457899999999999987 5
Q ss_pred HHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCccc---CCC--CCCCccEEEEcCCCCc
Q 045431 143 QIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFP---DLS--TVARTDIIFFCSPNNP 217 (433)
Q Consensus 143 ~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~i~l~~p~nP 217 (433)
..+.++||+|++++|+|.++...++..| ..++.++.+.++.... .++ ..+++++|++++|+||
T Consensus 77 ~~~~~~g~~vl~~~~~~~~~~~~~~~~~------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~ 144 (350)
T cd00609 77 RALLNPGDEVLVPDPTYPGYEAAARLAG------------AEVVPVPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNP 144 (350)
T ss_pred HHhCCCCCEEEEcCCCchhHHHHHHHCC------------CEEEEEecccccCCccCHHHHHhhcCccceEEEEECCCCC
Confidence 6677899999999999999999999888 4788888876554433 111 2468899999999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCc-ccccCCCCcceEEEecccccccccccceeeeeccc-cc
Q 045431 218 TGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRS-IFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPK-EL 295 (433)
Q Consensus 218 tG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~-~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~-~~ 295 (433)
||.+++.+++++|+++|+++|+++|+|++|+.+.+.+.... +... ...+.+++++|++|.++++|+|+||+++++ .+
T Consensus 145 tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~ 223 (350)
T cd00609 145 TGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALL-DAYERVIVLRSFSKTFGLPGLRIGYLIAPPEEL 223 (350)
T ss_pred CCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccccCc-CccCcEEEEeecccccCCcccceEEEecCHHHH
Confidence 99999999999999999999999999999998776544322 1222 234568999999999988999999999998 55
Q ss_pred cccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCee-ecCCCccEEEE
Q 045431 296 LFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKV-YGGKNAPYVWV 374 (433)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~-~~~~~g~~~~~ 374 (433)
+ +.+..........++...+.++..++.... +++++.++.++++++.+.+.|++.+... ..+.+|+++|+
T Consensus 224 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~g~~~~~ 294 (350)
T cd00609 224 L--------ERLKKLLPYTTSGPSTLSQAAAAAALDDGE-EHLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWL 294 (350)
T ss_pred H--------HHHHHHHHhcccCCChHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCccEEEEE
Confidence 3 556655555556688888988888887543 5678889999999999999999985543 45678999999
Q ss_pred ECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHH
Q 045431 375 QFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKH 430 (433)
Q Consensus 375 ~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~ 430 (433)
.+++....+.+.++++++||.+.++..|...+..++|+++....+++++++++|++
T Consensus 295 ~~~~~~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~~~~i~~~~~al~~ 350 (350)
T cd00609 295 DLPEGDDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATPEEELEEALERLAE 350 (350)
T ss_pred ecCCCChHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCCHHHHHHHHHHhhC
Confidence 99865556677777788899999998876556789999986669999999999863
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=269.82 Aligned_cols=332 Identities=13% Similarity=0.107 Sum_probs=241.9
Q ss_pred CCCCceEEecCCCC--CCCChH---HHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCC
Q 045431 60 YPDAEVISLGIGDT--TEPIPE---VITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDG 134 (433)
Q Consensus 60 ~~~~~~i~l~~g~~--~~~~~~---~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G 134 (433)
..+.++|+|+.|+| |+++|+ .+.+++.+++. .+...|++..|.++||+++++++ + .++|++|+|
T Consensus 33 ~~g~~~~~L~~g~p~~D~~tds~t~a~~~a~~~a~~-----~g~~~Y~~~~g~~~Lreaia~~~----~--~~~vv~t~g 101 (460)
T PRK13238 33 EAGYNPFLLKSEDVFIDLLTDSGTGAMSDRQWAAMM-----RGDEAYAGSRSYYRLEDAVKDIF----G--YPYTIPTHQ 101 (460)
T ss_pred HcCCCEEeCCCCCCCCCCCCCCCchhhhHHHHHHHH-----hCCcccCCCCCHHHHHHHHHHHh----C--CCcEEECCC
Confidence 34567999999998 677766 57788888775 34468999999999999999998 3 357999999
Q ss_pred hHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCcc------CCcc--cCCCC---
Q 045431 135 AKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAE------NGFF--PDLST--- 202 (433)
Q Consensus 135 ~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~--- 202 (433)
+++++.+ +..+++||| |++++|.|..+...+...|. .++.++.+.. +++. .+++.
T Consensus 102 gt~A~~~~~~all~pGD-Vii~~p~~~~~~~~i~~~G~------------~~v~v~~~~~~~~~~~~~f~g~id~e~Le~ 168 (460)
T PRK13238 102 GRAAEQILFPVLIKKGD-VVPSNYHFDTTRAHIELNGA------------TAVDLVIDEALDTGSRHPFKGNFDLEKLEA 168 (460)
T ss_pred HHHHHHHHHHHhCCCCC-EEccCCcccchHHHHHHcCC------------EEEEEeccccccccccccccCCcCHHHHHH
Confidence 9999997 577899999 99999999999988888884 6777776531 2232 33221
Q ss_pred --C----CCccEEEEcCCCCccc-cCCCHHHHHHHHHHHHHcCCEEEEeccccc--cccCC------CCCcccccCCCCc
Q 045431 203 --V----ARTDIIFFCSPNNPTG-AAATREQLTRLVQFAKDNGSIIVYDSAYAL--YISDD------NPRSIFEIPGAKE 267 (433)
Q Consensus 203 --~----~~~~~i~l~~p~nPtG-~~~~~~~~~~i~~~a~~~~~~li~De~~~~--~~~~~------~~~~~~~~~~~~~ 267 (433)
. +++++|++++|||||| .+++.+++++|.++|++||++||+|+++.. ..+.. ...++.++
T Consensus 169 ~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i----- 243 (460)
T PRK13238 169 LIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEI----- 243 (460)
T ss_pred HHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHH-----
Confidence 1 3689999999999997 999999999999999999999999997742 22221 12233222
Q ss_pred ceEEEecccccccccccce------eeeeccc-cccccCCcchhHHHHHHH----hh-ccCCCcHHHHHHHHHhcCcCCh
Q 045431 268 VAIETSSFSKYAGFTGVRL------GWTVIPK-ELLFSDGFPVAKDFNRIV----CT-CFNGASNISQAGGLACLSPEGF 335 (433)
Q Consensus 268 ~vi~i~S~sK~~~~~G~r~------G~l~~~~-~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~q~~~~~~l~~~~~ 335 (433)
+..++|++|.+.++|+|+ |++++++ +++ +.++... .. +..+.+...|.|+...+++...
T Consensus 244 -~~~~~s~~D~~~~Sg~K~g~~~~GG~i~~~d~~l~--------~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~ 314 (460)
T PRK13238 244 -AREMFSYADGLTMSAKKDAMVNIGGLLCFRDEDLF--------TECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGMD 314 (460)
T ss_pred -hhhhcccCcEEEEecccCCCCcceeEEEcChHHHH--------HHhhhcccccCCcccccCcHHHHHHHHHhhHHHhhC
Confidence 233456667666666665 3566664 342 4444332 11 2223345557766666653111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCCC---------ChHHHHHHHHHcCCeEecCCCCCCCCC
Q 045431 336 KAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGR---------SSWDVFSEILEKTHVVTTPGSGFGPGG 406 (433)
Q Consensus 336 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~---------~~~~~~~~l~~~~gi~v~~g~~f~~~~ 406 (433)
+.......+++++|.+.|.+.|+.+..|.+|+|+++++... .+.++..+|+++.||.+.|+..|....
T Consensus 315 ---~~~~~~~~~~~~~l~~~L~~~G~~~~~p~Gg~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~ 391 (460)
T PRK13238 315 ---EDYLAYRIGQVEYLGEGLEEAGVPIQTPAGGHAVFVDAGKFLPHIPAEQFPAQALACELYLEAGIRGVEIGSLLLGR 391 (460)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHCCCCeEccCCceEEEEEchhcCCCCCCCCCchHHHHHHHHHHcCeeeecccceeccc
Confidence 12222223467999999999999999999999999998632 457799999999999999999885221
Q ss_pred -----------CCeEEEeecc---ChhHHHHHHHHHHHhh
Q 045431 407 -----------EGFIRVSAFG---HRGNVLEACKRFKHLY 432 (433)
Q Consensus 407 -----------~~~iRi~~~~---~~~~l~~~l~~l~~~l 432 (433)
...+||++.. +.++++.+.++|+.+.
T Consensus 392 ~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~ 431 (460)
T PRK13238 392 DPKTGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVK 431 (460)
T ss_pred CCCCccccCCccceEEEecccccCCHHHHHHHHHHHHHHH
Confidence 4789999866 8999999999998764
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=235.18 Aligned_cols=343 Identities=19% Similarity=0.282 Sum_probs=246.6
Q ss_pred CceEEecCCCCCC-CC-hHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHH
Q 045431 63 AEVISLGIGDTTE-PI-PEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCD 138 (433)
Q Consensus 63 ~~~i~l~~g~~~~-~~-~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~a 138 (433)
+..|.|+.|.|.. |- .....+...+.+.........-+|+.++|...|.+++++.+++ +|++++.||.+|+|++.+
T Consensus 30 ~g~imLggGNPa~iPem~~~f~~~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~ygwnit~~NIalTnGSQs~ 109 (417)
T COG3977 30 PGAIMLGGGNPARIPEMDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYGWNITAQNIALTNGSQSA 109 (417)
T ss_pred CCceeeCCCCcccChhHHHHHHHHHHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHHHHhCCCCccceeeecCCccch
Confidence 3589999999852 21 1122223333332211113345899999999999999999997 888999999999999999
Q ss_pred HHHHHHhc----CCC--CEEEE-eCCCChhhhhhHHHhCCcccccccccccceEEEeecCcc------CCcc--cC---C
Q 045431 139 ISRLQIVF----GSN--VTMAV-QDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAE------NGFF--PD---L 200 (433)
Q Consensus 139 l~~l~~l~----~~g--d~Vl~-~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~--~~---~ 200 (433)
...+..++ ..| .+|++ ..|.|-+|.++... +-.++...++ +.|. .| +
T Consensus 110 fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l~---------------~d~fVs~kP~iel~~~g~FKY~vDF~~l 174 (417)
T COG3977 110 FFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLE---------------EDLFVSAKPNIELLPAGQFKYHVDFEHL 174 (417)
T ss_pred HHHHHHHhcCccCCCcceeEeeccChhhccccccccC---------------ccceeeccCCcccccccceeeccCHHHc
Confidence 88765554 344 34555 67888887654321 1112222221 1111 11 2
Q ss_pred CCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccc
Q 045431 201 STVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAG 280 (433)
Q Consensus 201 ~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~ 280 (433)
...+.+.+|+++-|.||||.+++.+|+.+|-.+|++||+++|+|.+|+. -|.+--.+=.+ .-..+|++.+.|+||. |
T Consensus 175 ~i~e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~-PFP~iifsd~~-~~w~~NiilC~SLSK~-G 251 (417)
T COG3977 175 HIGESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGV-PFPGIIFSDAT-PLWNENIILCMSLSKL-G 251 (417)
T ss_pred ccccccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCC-CCCceeccccc-ccCCCCEEEEeehhhc-C
Confidence 2246788999999999999999999999999999999999999999984 12111000001 1135789999999996 5
Q ss_pred ccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHH--HHHHHHHHHHHHHHHHHHhh
Q 045431 281 FTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAV--HEVIGFYKENTDIIVETFNS 358 (433)
Q Consensus 281 ~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~--~~~~~~~~~~~~~l~~~l~~ 358 (433)
+||.|+|.+++.++++ +.+..+....+..++.+.++.+..++++.....+ +-.+-.|+++.+...+.|++
T Consensus 252 LPG~R~GIiIane~vi--------qaitnmn~iisLap~~~G~Aia~~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~ 323 (417)
T COG3977 252 LPGSRCGIIIANEKVI--------QAITNMNGIISLAPGRMGPAIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIAILRR 323 (417)
T ss_pred CCCcceeEEEccHHHH--------HHHHhccceeeecCCCccHHHHHHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 8999999999999886 6677666666666788899999999997665322 33445777777777777766
Q ss_pred c----CCeeecCCCccEEEEECC--CCChHHHHHHHHHcCCeEecCCCCCCC-------CCCCeEEEeeccChhHHHHHH
Q 045431 359 L----GFKVYGGKNAPYVWVQFP--GRSSWDVFSEILEKTHVVTTPGSGFGP-------GGEGFIRVSAFGHRGNVLEAC 425 (433)
Q Consensus 359 ~----g~~~~~~~~g~~~~~~~~--~~~~~~~~~~l~~~~gi~v~~g~~f~~-------~~~~~iRi~~~~~~~~l~~~l 425 (433)
. -+.+..|+++.|+|+=+. +....++.++|- +.||.+.||+.|-+ +...++|+++..++++++.++
T Consensus 324 ~lp~~~~~iHkpEGAIFlWLWf~dLPItt~~LYq~LK-a~Gvl~VPG~~FFpGl~~ewpH~hqC~Rmn~~~~~~~ie~Gv 402 (417)
T COG3977 324 YLPEYRCLIHKPEGAIFLWLWFKDLPITTEELYQRLK-ARGVLMVPGHYFFPGLDKEWPHTHQCMRMNYVPEPEKIEKGV 402 (417)
T ss_pred hcCccceeeecCCcceeehhhhccCCCCHHHHHHHHH-hCeEEEecccccCCCCCCCCCCccceEEEecCCCHHHHHHHH
Confidence 4 466788999999888776 567788887764 55999999999853 345789999989999999999
Q ss_pred HHHHHhh
Q 045431 426 KRFKHLY 432 (433)
Q Consensus 426 ~~l~~~l 432 (433)
.+|.+.+
T Consensus 403 a~lae~v 409 (417)
T COG3977 403 AILAEEV 409 (417)
T ss_pred HHHHHHH
Confidence 9998764
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-32 Score=255.12 Aligned_cols=307 Identities=15% Similarity=0.128 Sum_probs=226.9
Q ss_pred CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEE
Q 045431 75 EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMA 153 (433)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl 153 (433)
+...+.+.++..+++..++ +...-..+|++.+|+|+ +++++++++++|+.+++.. +.+++++||.|+
T Consensus 32 l~~~~~~~~~~~~~~~~~~--------g~~~~~~~Le~~lA~~~----g~~~e~ilv~~gg~~a~~~~~~al~~~gd~Vl 99 (346)
T TIGR03576 32 LAGGFKIDEEDLELLETYV--------GPAIFEEKVQELGREHL----GGPEEKILVFNRTSSAILATILALEPPGRKVV 99 (346)
T ss_pred CCCChhHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHHc----CCCcceEEEECCHHHHHHHHHHHhCCCCCEEE
Confidence 4567888888888886542 12234456666666665 8889999999999999987 688889999998
Q ss_pred Ee---CCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHH
Q 045431 154 VQ---DPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRL 230 (433)
Q Consensus 154 ~~---~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i 230 (433)
++ .|+|+.+...++..|. +++.+. +.+ . ++..+++++|++ ++++|+|.+++.+++++|
T Consensus 100 i~~~d~p~~~s~~~~~~l~ga------------~~~~~~-~l~-~----l~~~~~~~lIii-tg~s~~G~v~~~~~L~~i 160 (346)
T TIGR03576 100 HYLPEKPAHPSIPRSCKLAGA------------EYFESD-ELS-E----LKKIDGTSLVVI-TGSTMDLKVVSEEDLKRV 160 (346)
T ss_pred ECCCCCCCchhHHHHHHHcCC------------EEeccC-CHH-H----HhhCcCceEEEE-ECCCCCCcccCHHHHHHH
Confidence 74 5799999888888884 332211 111 1 222345777777 457999999999999999
Q ss_pred HHHHHHcCCEEEEeccccccccCC-CCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHH
Q 045431 231 VQFAKDNGSIIVYDSAYALYISDD-NPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNR 309 (433)
Q Consensus 231 ~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~ 309 (433)
+++|++||+++|+||+|+.+.... ...+.... + . .++++|||| +++|+|+||++++++++ +.+..
T Consensus 161 ~~la~~~~~~livDEAy~~~~~~~~~~~~~~~~-~-~--divv~s~SK--alaG~r~G~v~~~~~li--------~~l~~ 226 (346)
T TIGR03576 161 IKQAKSKEAIVLVDDASGARVRRLYGQPPALDL-G-A--DLVVTSTDK--LMDGPRGGLLAGRKELV--------DKIKS 226 (346)
T ss_pred HHHHHHcCCEEEEECCccccccccCCCCCHHHc-C-C--cEEEeccch--hccccceEEEEeCHHHH--------HHHHH
Confidence 999999999999999999754321 11122222 1 1 267889999 46899999999999885 66665
Q ss_pred HHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCCCChHHHHHHHH
Q 045431 310 IVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSWDVFSEIL 389 (433)
Q Consensus 310 ~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~l~ 389 (433)
.......+.+++.|.++.++|+... .+.+++.++++++.+.+.+++ +.+.++ .++|+|+++++.++.++...++
T Consensus 227 ~~~~~~~s~~~~~~~aa~~aL~~~~---~~~~~~~l~~r~~~~~~~l~~--~~~~~~-~~~f~~~~~~~~~~~~~~~~ll 300 (346)
T TIGR03576 227 VGEQFGLEAQAPLLAAVVRALEEFE---LSRIRDAFKRKEEVYLRLFDK--LNVERT-PTGFVIKGVEEEKLIEIGLDLL 300 (346)
T ss_pred hhcCcccCccHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHh--CCCCcC-CCeEEEEeCCCCCHHHHHHHHH
Confidence 5544333468889999999987432 256678888999888888874 444443 4558999997544567788888
Q ss_pred HcCCeEecCCCCCCCCCCCeEEEeeccChh---HHHHHHHHHHHhhC
Q 045431 390 EKTHVVTTPGSGFGPGGEGFIRVSAFGHRG---NVLEACKRFKHLYK 433 (433)
Q Consensus 390 ~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~---~l~~~l~~l~~~l~ 433 (433)
+++||.++||..|. ..++++||+++.+++ +++.+++.|++.++
T Consensus 301 ~~~gV~v~~~~~f~-~~~~~vRis~~~~~~~~~~~~~~~~al~~~~~ 346 (346)
T TIGR03576 301 RNYGIITITAVGMP-GASKTLRFDLAAKDAERIGDDYLVEAVKDSLK 346 (346)
T ss_pred HhCCEEEeCCcccC-CCCCeEEEEEecChHHhcCHHHHHHHHHhccC
Confidence 88999999998883 346799999987665 89999999988764
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-32 Score=259.05 Aligned_cols=331 Identities=15% Similarity=0.149 Sum_probs=230.2
Q ss_pred CCCceEEecCCCC-CCCChHHHHHHHHHHHhhcccCCCCCCCCCC----CCCHHHHHHHHHHHhccCCCCCCcEEEcCCh
Q 045431 61 PDAEVISLGIGDT-TEPIPEVITSALAKRSYALSTQEGYSGYGAE----QGEKPLRAAIASTFYKDLGIEEGDIFVSDGA 135 (433)
Q Consensus 61 ~~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~----~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~ 135 (433)
++.++|||+.|+| +.+.|+.+.+++.+++.++.. ....|... ....++++++++++ + .+++|++++|+
T Consensus 14 ~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~--~~~~~~~~~g~~~~~~~l~~~la~~~----~-~~~~i~~~~G~ 86 (360)
T TIGR00858 14 DGRRLLNFSSNDYLGLASHPEVIQAAQQGAEQYGA--GSTASRLVSGNSPLHEELEEELAEWK----G-TEAALLFSSGY 86 (360)
T ss_pred CCceEEecccCCcccCCCCHHHHHHHHHHHHhcCC--CCCCcCcccCCcHHHHHHHHHHHHHh----C-CCCEEEECchH
Confidence 4567999999965 345678999999998876432 22222222 23456888888876 4 36789999997
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCC--CCccEEEEcC
Q 045431 136 KCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV--ARTDIIFFCS 213 (433)
Q Consensus 136 ~~al~~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~ 213 (433)
++.+.++..++++||.|++++|+|+.+...++..|. +++.++..+...+...+... .+++++++.+
T Consensus 87 ~~~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~------------~~~~~~~~d~~~l~~~~~~~~~~~~~~v~~~~ 154 (360)
T TIGR00858 87 LANVGVISALVGKGDLILSDALNHASLIDGCRLSGA------------RVRRYRHNDVEHLERLLEKNRGERRKLIVTDG 154 (360)
T ss_pred HHHHHHHHHhCCCCCEEEEEccccHHHHHHHHhcCC------------ceEEecCCCHHHHHHHHHHcccCCCeEEEEeC
Confidence 777766777789999999999999999888888773 55555532111111111111 2467777778
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCccc---ccCCCCcceEEEecccccccccccceeeee
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIF---EIPGAKEVAIETSSFSKYAGFTGVRLGWTV 290 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~---~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~ 290 (433)
++||||...+ +++|.++|+++|++||+||+|+.+.++....+.. .++. .+++|+++||||++|++| ||++
T Consensus 155 ~~~~~G~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~s~sK~~~~~g---G~~~ 227 (360)
T TIGR00858 155 VFSMDGDIAP---LPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKP-EPVDIQVGTLSKALGSYG---AYVA 227 (360)
T ss_pred CccCCCCCcC---HHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCc-cCCcEEEEechhhhhccC---cEEE
Confidence 8999998877 7889999999999999999998655443222222 2221 357899999999998766 9999
Q ss_pred ccccccccCCcchhHHHHHHHhh-c-cCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCC
Q 045431 291 IPKELLFSDGFPVAKDFNRIVCT-C-FNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKN 368 (433)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~ 368 (433)
++++++ +.+...... . ..+.+...+.++.++++.. .+.++++++++++++.+.+.|+++++.+.+ ..
T Consensus 228 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~ 296 (360)
T TIGR00858 228 GSQALI--------DYLINRARTLIFSTALPPAVAAAALAALELI--QEEPWRREKLLALIARLRAGLEALGFTLMP-SC 296 (360)
T ss_pred cCHHHH--------HHHHHhCccceecCCCCHHHHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHHHHcCCccCC-CC
Confidence 988774 444332211 1 2224445455555656421 123567889999999999999998877664 47
Q ss_pred ccEEEEECCC-CChHHHHHHHHHcCCeEecCCCCCCC-CCCCeEEEeec--cChhHHHHHHHHHH
Q 045431 369 APYVWVQFPG-RSSWDVFSEILEKTHVVTTPGSGFGP-GGEGFIRVSAF--GHRGNVLEACKRFK 429 (433)
Q Consensus 369 g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~~-~~~~~iRi~~~--~~~~~l~~~l~~l~ 429 (433)
++++|+.++. .+..++...+++ +||.+.++..+.. .+.+++|+++. .+++++++++++|+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~l~~-~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~~i~~~l~~l~ 360 (360)
T TIGR00858 297 TPIVPVIIGDNASALALAEELQQ-QGIFVGAIRPPTVPAGTSRLRLTLSAAHTPGDIDRLAEALK 360 (360)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHH-CCeeEeeeCCCCCCCCCceEEEEEcCCCCHHHHHHHHHhhC
Confidence 8899999874 234566666654 5999998766542 34568999974 58999999999874
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-31 Score=257.86 Aligned_cols=336 Identities=18% Similarity=0.165 Sum_probs=229.3
Q ss_pred CCCceEEecCCC-CCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHH
Q 045431 61 PDAEVISLGIGD-TTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDI 139 (433)
Q Consensus 61 ~~~~~i~l~~g~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al 139 (433)
++.++|+|+.|+ ++++.++.+.+++.+.+.... .....|....|.+++++++++++.+.++.+ ++|++|+| ++++
T Consensus 40 ~g~~~i~l~~~~~~~~~~~~~i~~a~~~~~~~~~--~~~~~~~~~~G~~~l~~~l~~~la~~~g~~-~~i~~tsG-~~a~ 115 (397)
T PRK06939 40 DGKEVINFCANNYLGLANHPELIAAAKAALDSHG--FGMASVRFICGTQDLHKELEEKLAKFLGTE-DAILYSSC-FDAN 115 (397)
T ss_pred CCCeEEEeeccCccccCCCHHHHHHHHHHHHHcC--CCCcccccccCCcHHHHHHHHHHHHHhCCC-cEEEEcCh-HHHH
Confidence 567899999998 578889999999999887532 222334345688999999988888755654 78999999 4555
Q ss_pred HH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC----CCCccEEEEcCC
Q 045431 140 SR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST----VARTDIIFFCSP 214 (433)
Q Consensus 140 ~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~l~~p 214 (433)
.. +..++++||.|++++|+|+.+...+...+. +++.++..+...+...+.. ..++++|+..+.
T Consensus 116 ~~~~~~l~~~gd~vi~~~~~~~~~~~~~~~~~~------------~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~v 183 (397)
T PRK06939 116 GGLFETLLGKEDAIISDALNHASIIDGVRLCKA------------KRYRYANNDMADLEAQLKEAKEAGARHKLIATDGV 183 (397)
T ss_pred HHHHHHhCCCCCEEEEEhhhhHHHHHHHHhcCC------------ceEEeCCCCHHHHHHHHHhhhccCCCCeEEEEecC
Confidence 54 677889999999999999999888888874 4555544211111111111 125666665567
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccC--CCC-CcccccCCCCcceEEEecccccccccccceeeeec
Q 045431 215 NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISD--DNP-RSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVI 291 (433)
Q Consensus 215 ~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~--~~~-~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~ 291 (433)
+||||...+ +++|.++|++|+++||+||+|+..... +.+ .+...+. ++.+++++||||+++ |+|+||+++
T Consensus 184 ~~~~G~~~~---~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~--~~~~i~~~S~sK~~~--g~r~G~v~~ 256 (397)
T PRK06939 184 FSMDGDIAP---LPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVM--DRVDIITGTLGKALG--GASGGYTAG 256 (397)
T ss_pred cCCCCCcCC---HHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCC--CCCcEEEEECHHHhC--ccCceEEEe
Confidence 899998544 899999999999999999999632222 111 1111221 234699999999994 569999999
Q ss_pred cccccccCCcchhHHHHHHHhh--ccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCc
Q 045431 292 PKELLFSDGFPVAKDFNRIVCT--CFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNA 369 (433)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g 369 (433)
+++++ +.+...... .....+...+.++.++++.. ...++++++++++++.+.+.|+++++.+..+.+
T Consensus 257 ~~~~~--------~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~- 325 (397)
T PRK06939 257 RKEVI--------DWLRQRSRPYLFSNSLAPAIVAASIKVLELL--EESDELRDRLWENARYFREGMTAAGFTLGPGEH- 325 (397)
T ss_pred CHHHH--------HHHHHhCccccccCCCCHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHcCCCcCCCCC-
Confidence 98875 444432211 11112333445444444321 112567889999999999999988887665544
Q ss_pred cEEEEECCC-CChHHHHHHHHHcCCeEecCCCCCC--CCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 370 PYVWVQFPG-RSSWDVFSEILEKTHVVTTPGSGFG--PGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 370 ~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~--~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
.++++.++. .++.++...++++ ||.+.++. |. +.+.+++|+++ +.+++++++++++|++++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~L~~~-gI~v~~~~-~~~~~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~ 391 (397)
T PRK06939 326 PIIPVMLGDAKLAQEFADRLLEE-GVYVIGFS-FPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEKVG 391 (397)
T ss_pred CEEEEEECCHHHHHHHHHHHHHC-CceEeeeC-CCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 444455542 3456777777776 99998644 43 22356899986 468999999999999875
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-31 Score=258.76 Aligned_cols=339 Identities=13% Similarity=0.135 Sum_probs=249.2
Q ss_pred CCCceEEecCCCC-CCCChHHHHHHHHHHHhhcccCCC--CCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHH
Q 045431 61 PDAEVISLGIGDT-TEPIPEVITSALAKRSYALSTQEG--YSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 61 ~~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~~~~~~--~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~ 137 (433)
++.++|||+.+++ ++..++.+.+++.+++.+++.... ...|++..+..+|+++||+++ + .++.|++++|.+.
T Consensus 107 ~G~~~id~~s~~~lgl~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~----~-~~~~i~~s~G~~a 181 (481)
T PLN02822 107 NGKDVVNFASANYLGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFL----G-TPDSILYSYGLST 181 (481)
T ss_pred CCceEEEeECCCcCCCCCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHh----C-CCCEEEECCHHHH
Confidence 4567999998865 677899999999999988653111 125777888999999999998 5 4578999999886
Q ss_pred HHHHHHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-------CCCc-cEE
Q 045431 138 DISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-------VART-DII 209 (433)
Q Consensus 138 al~~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~i 209 (433)
...++.+++++||.|+++...|..+...+...+ .+++.++.++..++...+++ .+++ ++|
T Consensus 182 ~~sai~a~~~~gd~Ii~d~~~H~s~~~~~~ls~------------~~~~~~~~nd~~~l~~~l~~~~~~~~~~~~~~~~I 249 (481)
T PLN02822 182 IFSVIPAFCKKGDIIVADEGVHWGIQNGLYLSR------------STIVYFKHNDMESLRNTLEKLTAENKRKKKLRRYI 249 (481)
T ss_pred HHHHHHHhCCCCCEEEEeCCccHHHHHHHHHcC------------CeEEEECCCCHHHHHHHHHHHhhhhcccCCCcEEE
Confidence 555678899999999999888888877777776 36777777654444333321 1234 577
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCC--CcceEEEeccccccccccccee
Q 045431 210 FFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGA--KEVAIETSSFSKYAGFTGVRLG 287 (433)
Q Consensus 210 ~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~--~~~vi~i~S~sK~~~~~G~r~G 287 (433)
++..++|+||.+.+ +++|.++|++||+++|+||+|+...++.....+.+..+. .+..++++||||.+|++| |
T Consensus 250 vve~i~~~~G~i~~---L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg~~G---G 323 (481)
T PLN02822 250 VVEAIYQNSGQIAP---LDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALATEG---G 323 (481)
T ss_pred EEecCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhhhhCC---e
Confidence 77688999999999 799999999999999999999965554322222222111 244588999999999888 9
Q ss_pred eeeccccccccCCcchhHHHHHHHhhccCCC--cHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeee
Q 045431 288 WTVIPKELLFSDGFPVAKDFNRIVCTCFNGA--SNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVY 364 (433)
Q Consensus 288 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~ 364 (433)
|++++++++ +.+.........+. ++..+.++.++|+.. +...+++++++++++++.+.|++. |+.+.
T Consensus 324 ~i~g~~~ii--------~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l--~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~ 393 (481)
T PLN02822 324 FCTGSARVV--------DHQRLSSSGYVFSASLPPYLASAAITAIDVL--EDNPSVLAKLKENIALLHKGLSDIPGLSIG 393 (481)
T ss_pred EEEcCHHHH--------HHHHhcCCceeeccccCHHHHHHHHHHHHHH--HhCHHHHHHHHHHHHHHHHHHHhcCCcccC
Confidence 999998885 44443222222333 366777777777522 112567889999999999999987 88887
Q ss_pred cCCCccEEEEECCCC------C---hHHHHHHHHHcCCeEecCC--CCCCCC-CCCeEEEee--ccChhHHHHHHHHHHH
Q 045431 365 GGKNAPYVWVQFPGR------S---SWDVFSEILEKTHVVTTPG--SGFGPG-GEGFIRVSA--FGHRGNVLEACKRFKH 430 (433)
Q Consensus 365 ~~~~g~~~~~~~~~~------~---~~~~~~~l~~~~gi~v~~g--~~f~~~-~~~~iRi~~--~~~~~~l~~~l~~l~~ 430 (433)
.+.+++++++.+++. + ..++...+++++||.+.|+ ..|+.. .+.++|+++ ..++++|++++++|++
T Consensus 394 ~~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~edI~~~~~~l~~ 473 (481)
T PLN02822 394 SNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDILKASESLKR 473 (481)
T ss_pred CCCCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 777899999999632 1 2467788886779999976 333221 245799985 3699999999999988
Q ss_pred hh
Q 045431 431 LY 432 (433)
Q Consensus 431 ~l 432 (433)
++
T Consensus 474 ~~ 475 (481)
T PLN02822 474 VA 475 (481)
T ss_pred HH
Confidence 75
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-31 Score=253.09 Aligned_cols=339 Identities=15% Similarity=0.152 Sum_probs=236.2
Q ss_pred CCCCceEEecCCC-CCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHH
Q 045431 60 YPDAEVISLGIGD-TTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCD 138 (433)
Q Consensus 60 ~~~~~~i~l~~g~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~a 138 (433)
.+++++|||+.++ +++++++.+.+++.+++.+.. .....|....|.+++++++++++.+..+. +++|++++|+++.
T Consensus 30 ~~g~~~id~~~~~~~g~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~g~~~l~~~l~~~l~~~~g~-~~~i~~~sG~~a~ 106 (385)
T TIGR01825 30 VNGKEVINLSSNNYLGFADHPRLKEAAAQAIQQYG--VGAGAVRTIAGTLRLHEELEEKLAKFKKT-EAALVFQSGFNTN 106 (385)
T ss_pred ECCceEEEeeccCccCCCCCHHHHHHHHHHHHHcC--CCCCccCcccCCcHHHHHHHHHHHHHhCC-CcEEEECcHHHHH
Confidence 4566899999987 577788999999999887542 23456777889999999999999875554 4679999997666
Q ss_pred HHHHHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC--CCCccEEEEcCCCC
Q 045431 139 ISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST--VARTDIIFFCSPNN 216 (433)
Q Consensus 139 l~~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~p~n 216 (433)
+.++..++++||.|++++|+|+.+...+...|. ++..++..+...+...+.. .+++++|++++++|
T Consensus 107 ~~a~~~~~~~gd~vi~~~~~~~~~~~~~~~~g~------------~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~~~v~~ 174 (385)
T TIGR01825 107 QGVLSALLRKGDIVLSDELNHASIIDGLRLTKA------------TKKIYKHADMDDLDRVLRENPSYGKKLIVTDGVFS 174 (385)
T ss_pred HHHHHHhCCCCCEEEEEccccHHHHHHHHhcCC------------ceEEeCCCCHHHHHHHHHhhccCCCeEEEEecCCc
Confidence 655778899999999999999998877776663 3433331111111111111 13677777778899
Q ss_pred ccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCC-CcccccCCCCcceEEEecccccccccccceeeeeccccc
Q 045431 217 PTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNP-RSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKEL 295 (433)
Q Consensus 217 PtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~-~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~ 295 (433)
|||.+.+ +++|.++|++||+++|+||+|+.+.++... .....++-.++++++++||||++|++| ||+++++++
T Consensus 175 ~tG~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g---G~~~~~~~~ 248 (385)
T TIGR01825 175 MDGDVAP---LPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAIGVVG---GYAAGHKEL 248 (385)
T ss_pred CCCCccC---HHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEEeccHHhhcCC---CEEecCHHH
Confidence 9999888 788999999999999999999876544211 111111112467899999999998666 999988877
Q ss_pred cccCCcchhHHHHHHHh-hc-cCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEE
Q 045431 296 LFSDGFPVAKDFNRIVC-TC-FNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVW 373 (433)
Q Consensus 296 ~~~~~~~~~~~~~~~~~-~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~ 373 (433)
+ +.+..... .. ....+++.+.++.++++.... ..+..++++++++++.+.|++.|+++..+. +.+++
T Consensus 249 ~--------~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~ 317 (385)
T TIGR01825 249 I--------EYLKNRARPFLFSTAQPPAVVAALAAAVDELQR--SPELMERLWDNTRFFKAGLGKLGYDTGGSE-TPITP 317 (385)
T ss_pred H--------HHHHHhCccccccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCEEE
Confidence 4 44443221 11 122455667666666642111 134566778889999999998888877654 44666
Q ss_pred EECCC-CChHHHHHHHHHcCCeEecCCCCCC--CCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 374 VQFPG-RSSWDVFSEILEKTHVVTTPGSGFG--PGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 374 ~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~--~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
+.++. .+..++...++++ ||.+. +..|. +.+..++|++. +.+++++++++++|++++
T Consensus 318 ~~~~~~~~~~~~~~~L~~~-gi~v~-~~~~~~~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~ 379 (385)
T TIGR01825 318 VVIGDEKAAQEFSRRLFDE-GIFAQ-SIVFPTVPRGTARIRNIPTAEHTKDDLDQALDAYEKVG 379 (385)
T ss_pred EEECCHHHHHHHHHHHHHC-CcEEc-ccCCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 66553 2345677777776 99985 44443 23457899985 579999999999999875
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-30 Score=251.89 Aligned_cols=331 Identities=18% Similarity=0.170 Sum_probs=226.7
Q ss_pred CCCceEEecCCCC-CCCChHHHHHHHHHHHhhcccCCCCCCCCCCC---CC----HHHHHHHHHHHhccCCCCCCcEEEc
Q 045431 61 PDAEVISLGIGDT-TEPIPEVITSALAKRSYALSTQEGYSGYGAEQ---GE----KPLRAAIASTFYKDLGIEEGDIFVS 132 (433)
Q Consensus 61 ~~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~---g~----~~lr~~la~~l~~~~~~~~~~i~~~ 132 (433)
++.++|+|+.+++ +++.++.+.+++.+++.+.+ .+|+++. |. .+|++++|+++ +. ++++++
T Consensus 36 ~g~~~i~~~~~~~lg~~~~~~v~~~~~~~~~~~~-----~~~~~s~~~~G~~~~~~~le~~ia~~~----g~--~~~ii~ 104 (393)
T TIGR01822 36 DGREVLNFCANNYLGLSSHPDLIQAAKDALDEHG-----FGMSSVRFICGTQDIHKELEAKIAAFL----GT--EDTILY 104 (393)
T ss_pred CCceEEEeeCCCccccCCCHHHHHHHHHHHHHhC-----CCCCCcCcccCChHHHHHHHHHHHHHh----CC--CcEEEE
Confidence 4568999999996 78889999999999987642 1333333 65 88999999997 54 467777
Q ss_pred CChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC----CCCcc
Q 045431 133 DGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST----VARTD 207 (433)
Q Consensus 133 ~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 207 (433)
+|+++++.. +..++++||.|++++|+|+++...++..+.. .+.++..+...+...+.. ..+++
T Consensus 105 ~~~~~a~~~~~~~l~~~gd~vi~~~~~~~s~~~~~~~~~~~------------~~~~~~~d~~~l~~~i~~~~~~~~~~~ 172 (393)
T TIGR01822 105 ASCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAK------------RYRYANNDMADLEAQLKEARAAGARHR 172 (393)
T ss_pred CchHHHHHHHHHHhCCCCCEEEEeccccHHHHHHHHhcCCc------------eEEeCCCCHHHHHHHHHhhhhcCCCce
Confidence 888888886 5778899999999999999998888777742 222221111111111111 12677
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCC-CCcceEEEecccccccccccce
Q 045431 208 IIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPG-AKEVAIETSSFSKYAGFTGVRL 286 (433)
Q Consensus 208 ~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~-~~~~vi~i~S~sK~~~~~G~r~ 286 (433)
+|++.+++||||.+.+ +++|+++|++||++||+||+|+.........+.....+ ..+.+++++|+||++ +|+|+
T Consensus 173 ~v~~~~v~~~tG~~~~---l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l--~g~r~ 247 (393)
T TIGR01822 173 LIATDGVFSMDGVIAP---LDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLGKAL--GGASG 247 (393)
T ss_pred EEEEeCCccCCCCcCC---HHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEEEChHHh--hCCCc
Confidence 8887788999999987 88999999999999999999963222211222211111 124569999999987 47899
Q ss_pred eeeeccccccccCCcchhHHHHHHH-hhccC-CCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeee
Q 045431 287 GWTVIPKELLFSDGFPVAKDFNRIV-CTCFN-GASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVY 364 (433)
Q Consensus 287 G~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 364 (433)
||++++++++ +.+.... ..... +.+...+.++.++++.. +..++++++++++++++.+.|++.|+.+.
T Consensus 248 G~~~~~~~~~--------~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 317 (393)
T TIGR01822 248 GFTTARKEVV--------ELLRQRSRPYLFSNSLPPAVVGASIKVLEML--EASNELRDRLWANTRYFRERMEAAGFDIK 317 (393)
T ss_pred EEEEeCHHHH--------HHHHHhCccceecCCCCHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 9999998875 4444321 11112 23344444555555421 22467788999999999999998888765
Q ss_pred cCCCccEEEEECCC-CChHHHHHHHHHcCCeEecCCCCCC--CCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 365 GGKNAPYVWVQFPG-RSSWDVFSEILEKTHVVTTPGSGFG--PGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 365 ~~~~g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~--~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
++ .+.++++.+++ ....++...|+++ ||.+. +..|. +.+...+|+++ +.+++++++++++|++++
T Consensus 318 ~~-~~~~~~i~~~~~~~~~~l~~~L~~~-gI~v~-~~~~~~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~ 387 (393)
T TIGR01822 318 PA-DHPIIPVMLYDAVLAQRFARRLLEE-GIYVT-GFFYPVVPKGQARIRVQISAAHTEEQLDRAVEAFTRIG 387 (393)
T ss_pred CC-CCCEEEEEeCCHHHHHHHHHHHHHC-CeeEe-eeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 44 34556666553 3456677777665 99997 55553 22345799885 568999999999998874
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.6e-30 Score=252.44 Aligned_cols=336 Identities=16% Similarity=0.200 Sum_probs=233.5
Q ss_pred CCceEEecCCCC-CCC-ChHHHHHHHHHHHhhcccC--CCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHH
Q 045431 62 DAEVISLGIGDT-TEP-IPEVITSALAKRSYALSTQ--EGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 62 ~~~~i~l~~g~~-~~~-~~~~~~~a~~~~~~~~~~~--~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~ 137 (433)
...+++|++.++ .+. .++...+++.+++.+++.. .....|+...+..+|++++|+++ + .++.|++++|...
T Consensus 99 ~~~~~n~~s~~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~----g-~~~ai~~~~G~~a 173 (489)
T PLN02483 99 TRRCLNLGSYNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFV----G-KPAAIVFGMGYAT 173 (489)
T ss_pred CceEEEeecCCccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHh----C-CCcEEEECCHHHH
Confidence 456899988876 344 2455556666666665432 23335888889999999999998 5 4678999998777
Q ss_pred HHHHHHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCC-----cc
Q 045431 138 DISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VAR-----TD 207 (433)
Q Consensus 138 al~~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-----~~ 207 (433)
.+.++..++++||.|++++|+|+++...++..| .+++.++.++..++...+++ .++ .+
T Consensus 174 n~~~i~al~~~Gd~Vi~d~~~h~s~~~~~~~~G------------a~v~~~~~~d~~~le~~l~~~i~~~~p~t~~p~~k 241 (489)
T PLN02483 174 NSTIIPALIGKGGLIISDSLNHNSIVNGARGSG------------ATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKK 241 (489)
T ss_pred HHHHHHHhCCCCCEEEEcchhhHHHHHHHHHcC------------CeEEEEeCCCHHHHHHHHHhhhhccccccccCCce
Confidence 776678889999999999999999999988888 47777776532222111111 122 25
Q ss_pred EEEEcCC-CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCC---CcccccCCCCcceEEEecccccccccc
Q 045431 208 IIFFCSP-NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNP---RSIFEIPGAKEVAIETSSFSKYAGFTG 283 (433)
Q Consensus 208 ~i~l~~p-~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~---~~~~~~~~~~~~vi~i~S~sK~~~~~G 283 (433)
+++++++ .|++|...+ +++|+++|++||++||+||+|+....+... .++..++ ..+.+|+++||||++|++|
T Consensus 242 ~livve~v~s~~G~~~~---l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~-~~~~dI~~~SfSKs~g~~G 317 (489)
T PLN02483 242 IIVIVEGIYSMEGELCK---LPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVD-PADVDIMMGTFTKSFGSCG 317 (489)
T ss_pred EEEEECCCCCCCCcccC---HHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCC-cccCcEEEEecchhcccCc
Confidence 6666655 689998876 899999999999999999999843322111 2222222 1356799999999998777
Q ss_pred cceeeeeccccccccCCcchhHHHHHHHhh---ccCCCcHHHHHHHHHhc---C-cCChhHHHHHHHHHHHHHHHHHHHH
Q 045431 284 VRLGWTVIPKELLFSDGFPVAKDFNRIVCT---CFNGASNISQAGGLACL---S-PEGFKAVHEVIGFYKENTDIIVETF 356 (433)
Q Consensus 284 ~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~q~~~~~~l---~-~~~~~~~~~~~~~~~~~~~~l~~~l 356 (433)
||++++++++ +.+...... .....+...|. +.+.+ . ..+.....+++++++++++++.+.|
T Consensus 318 ---G~i~~~~~li--------~~l~~~~~~~~~~~~~~p~~~~~-~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L 385 (489)
T PLN02483 318 ---GYIAGSKELI--------QYLKRTCPAHLYATSMSPPAVQQ-VISAIKVILGEDGTNRGAQKLAQIRENSNFFRSEL 385 (489)
T ss_pred ---eEEEcCHHHH--------HHHHHhCccccccCCcCHHHHHH-HHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHH
Confidence 9999998885 555543221 11222333433 34444 2 2222334556789999999999999
Q ss_pred hhcCCeeecCCCccEEEEECCC-CChHHHHHHHHHcCCeEecCCCCCC--CCCCCeEEEeec--cChhHHHHHHHHHHHh
Q 045431 357 NSLGFKVYGGKNAPYVWVQFPG-RSSWDVFSEILEKTHVVTTPGSGFG--PGGEGFIRVSAF--GHRGNVLEACKRFKHL 431 (433)
Q Consensus 357 ~~~g~~~~~~~~g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~--~~~~~~iRi~~~--~~~~~l~~~l~~l~~~ 431 (433)
+++|+.+.++.+++.+|+.+.. ....++...++++ ||.+.| ..|. +...+.+||++. .+++++++++++|+++
T Consensus 386 ~~~G~~v~~~~~sp~~~l~l~~~~~~~~~~~~Ll~~-GI~v~~-~~fp~~p~~~~~vRi~isa~~t~edId~~l~~L~~~ 463 (489)
T PLN02483 386 QKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLKQ-NVAVVV-VGFPATPLLLARARICISASHSREDLIKALEVISEV 463 (489)
T ss_pred HHCCCcccCCCCCCEEEEEECCHHHHHHHHHHHHHC-CcEEee-eCCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 9999887766677788777642 2344677777665 999997 4442 334578999864 5899999999999887
Q ss_pred h
Q 045431 432 Y 432 (433)
Q Consensus 432 l 432 (433)
+
T Consensus 464 ~ 464 (489)
T PLN02483 464 G 464 (489)
T ss_pred H
Confidence 4
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.7e-30 Score=246.88 Aligned_cols=338 Identities=13% Similarity=0.119 Sum_probs=223.5
Q ss_pred CCCceEEecCCCC-CCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHH
Q 045431 61 PDAEVISLGIGDT-TEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDI 139 (433)
Q Consensus 61 ~~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al 139 (433)
++..+|||+.+++ ++.+++.+.+++.+++.++.. ....|....|..++++.+++.+.+.++ .++.|++++|+.+.+
T Consensus 37 ~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~--~~~~~~~~~g~~~~~~~l~~~la~~~~-~~~~i~~~~g~~~~~ 113 (385)
T PRK05958 37 DGRRMLNFASNDYLGLARHPRLIAAAQQAARRYGA--GSGGSRLVTGNSPAHEALEEELAEWFG-AERALLFSSGYAANL 113 (385)
T ss_pred CCceEEEeeCCCcccCCCCHHHHHHHHHHHHhcCC--CCCCcCcccCCcHHHHHHHHHHHHHhC-CCcEEEECcHHHHHH
Confidence 5678999999875 345678999999999876431 122232333444444444444433235 356677777666555
Q ss_pred HHHHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCCC-CccEEEEcCCCCcc
Q 045431 140 SRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA-RTDIIFFCSPNNPT 218 (433)
Q Consensus 140 ~~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~l~~p~nPt 218 (433)
.++..++++||.|++++|+|+.+...+...|. +++.++..+...+...+.... ++.++++.+++|||
T Consensus 114 ~~l~~~~~~gd~V~~~~~~~~~~~~~~~~~g~------------~~~~~~~~d~~~l~~~i~~~~~~~~lvi~~~~~~~~ 181 (385)
T PRK05958 114 AVLTALAGKGDLIVSDKLNHASLIDGARLSRA------------RVRRYPHNDVDALEALLAKWRAGRALIVTESVFSMD 181 (385)
T ss_pred HHHHHhCCCCCEEEEeCccCHHHHHHHHhcCC------------ceEEeCCCCHHHHHHHHHhccCCCeEEEEEecccCC
Confidence 55677889999999999999999888877773 555665432111111111111 24444444779999
Q ss_pred ccCCCHHHHHHHHHHHHHcCCEEEEeccccccccC--CC-CCcccccCCCCcceEEEecccccccccccceeeeeccccc
Q 045431 219 GAAATREQLTRLVQFAKDNGSIIVYDSAYALYISD--DN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKEL 295 (433)
Q Consensus 219 G~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~--~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~ 295 (433)
|...+ +++|.++|++||+++|+||+|+.+.++ +. ......++. .+++++++|+||++|++| ||+++++++
T Consensus 182 G~~~~---l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G---g~~~~~~~~ 254 (385)
T PRK05958 182 GDLAP---LAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAG-EPDVILVGTLGKALGSSG---AAVLGSETL 254 (385)
T ss_pred CCcCC---HHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCC-CCceEEEEechhhcccCC---cEEEcCHHH
Confidence 98766 889999999999999999999764443 21 111112332 356799999999998766 999988776
Q ss_pred cccCCcchhHHHHHHH-hh-ccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEE
Q 045431 296 LFSDGFPVAKDFNRIV-CT-CFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVW 373 (433)
Q Consensus 296 ~~~~~~~~~~~~~~~~-~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~ 373 (433)
+ +.+.... .. ...+.+++.+.++.++++.... . +.+.+++.++++.+.+.|++.++++..+ .+.++|
T Consensus 255 ~--------~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~-~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~ 323 (385)
T PRK05958 255 I--------DYLINRARPFIFTTALPPAQAAAARAALRILRR-E-PERRERLAALIARLRAGLRALGFQLMDS-QSAIQP 323 (385)
T ss_pred H--------HHHHHhCccceecCCCCHHHHHHHHHHHHHHhc-C-HHHHHHHHHHHHHHHHHHHHcCCCcCCC-CCCEEE
Confidence 4 4443221 11 1223445555555555542211 1 4667889999999999999888877654 667888
Q ss_pred EECCC-CChHHHHHHHHHcCCeEecCCCCCC-CCCCCeEEEeec--cChhHHHHHHHHHHHhh
Q 045431 374 VQFPG-RSSWDVFSEILEKTHVVTTPGSGFG-PGGEGFIRVSAF--GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 374 ~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~-~~~~~~iRi~~~--~~~~~l~~~l~~l~~~l 432 (433)
+.++. .++.++...+.+ +||.+.++..+. +.+++++|+++. .+++++++++++|++++
T Consensus 324 ~~~~~~~~~~~~~~~l~~-~gI~v~~~~~~~~~~~~~~lRis~~~~~~~~~i~~~l~~l~~~~ 385 (385)
T PRK05958 324 LIVGDNERALALAAALQE-QGFWVGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLEALAEAL 385 (385)
T ss_pred EEeCCHHHHHHHHHHHHH-CCceEecccCCCCCCCCceEEEEecCCCCHHHHHHHHHHHHhcC
Confidence 88874 344567777654 599998865432 234578999974 58999999999998864
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-30 Score=249.04 Aligned_cols=336 Identities=13% Similarity=0.121 Sum_probs=227.9
Q ss_pred CceEEecCCCC-CCCChHHHHHHHHHHHhhcccCCCC--CCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHH
Q 045431 63 AEVISLGIGDT-TEPIPEVITSALAKRSYALSTQEGY--SGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDI 139 (433)
Q Consensus 63 ~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~~~~~~~--~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al 139 (433)
.++++|+.+++ ++..++.+.+++.+++.++....+. ..|+......+|++.+|+++ +. ++.|++++|+++..
T Consensus 46 ~~~~~~~sn~yl~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~----g~-~~~i~~~sG~~a~~ 120 (410)
T PRK13392 46 RRVTIWCSNDYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLH----GK-ESALLFTSGYVSND 120 (410)
T ss_pred ceEEEEECCCccCCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHh----CC-CCEEEECcHHHHHH
Confidence 46888888765 6778999999999998775421111 12333334678999999987 63 57899999875444
Q ss_pred HHHHHhc--CCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC--CCCccEEEEcCCC
Q 045431 140 SRLQIVF--GSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST--VARTDIIFFCSPN 215 (433)
Q Consensus 140 ~~l~~l~--~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~p~ 215 (433)
.++..+. .+||.|+++.+.|..+...++..|. ++..++.++...+...++. .+++++|++++|+
T Consensus 121 ~~i~~l~~~~~g~~vi~~~~~h~s~~~~~~~~g~------------~~~~~~~~d~~~l~~~l~~~~~~~t~~v~i~~~~ 188 (410)
T PRK13392 121 AALSTLGKLLPGCVILSDALNHASMIEGIRRSGA------------EKQVFRHNDLADLEEQLASVDPDRPKLIAFESVY 188 (410)
T ss_pred HHHHHHhcCCCCCEEEEehhhhHHHHHHHHHcCC------------eEEEEeCCCHHHHHHHHHhccCCCCEEEEEeCCC
Confidence 4455454 4899888888888887777776663 4444443211111111221 2478899999999
Q ss_pred CccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcc-eEEEecccccccccccceeeeecccc
Q 045431 216 NPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEV-AIETSSFSKYAGFTGVRLGWTVIPKE 294 (433)
Q Consensus 216 nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~-vi~i~S~sK~~~~~G~r~G~l~~~~~ 294 (433)
||||.+++ +++|.++|++|++++|+||+|+...++.....+....+..++ .++++||||.+|++| ||++++++
T Consensus 189 n~tG~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~~G---G~~~~~~~ 262 (410)
T PRK13392 189 SMDGDIAP---IEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGCLG---GYIAASAD 262 (410)
T ss_pred CCCccccc---HHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhccc---chhhcCHH
Confidence 99999998 888888999999999999999943333222222222111122 388999999999888 99998887
Q ss_pred ccccCCcchhHHHHHHHhh--ccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEE
Q 045431 295 LLFSDGFPVAKDFNRIVCT--CFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYV 372 (433)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~ 372 (433)
++ +.+.+.... .....+++.+.++.++|+... .....+++++++++++.+.|++.|+.+.++ .+.++
T Consensus 263 ~~--------~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~--~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~ 331 (410)
T PRK13392 263 LI--------DFVRSFAPGFIFTTALPPAVAAGATAAIRHLK--TSQTERDAHQDRVAALKAKLNANGIPVMPS-PSHIV 331 (410)
T ss_pred HH--------HHHHHhCcchhccCcCCHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHcCCCCCCC-CCCEE
Confidence 75 444443321 123345577877777776322 223456788999999999999989887654 45555
Q ss_pred EEECCCC-ChHHHHHHHHHcCCeEecCCCCCC-CCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 373 WVQFPGR-SSWDVFSEILEKTHVVTTPGSGFG-PGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 373 ~~~~~~~-~~~~~~~~l~~~~gi~v~~g~~f~-~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
.+.++.. ...++.+.|++++||.+.++.... +.+..++|+++ ..++++++.+++.|++++
T Consensus 332 ~i~~~~~~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid~l~~aL~~~~ 395 (410)
T PRK13392 332 PVMVGDPTLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALVAALVAIW 395 (410)
T ss_pred EEEeCCHHHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 5555421 234667777766799999865332 23457899996 568999999999998864
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-30 Score=242.80 Aligned_cols=312 Identities=16% Similarity=0.169 Sum_probs=211.9
Q ss_pred eEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HH
Q 045431 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQ 143 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~ 143 (433)
+|||+++.++. +++.+++++.+.. .....|++..+..+|++++++++ ++++. ++++|+++++.+ +.
T Consensus 1 ~~~~~~~~~~~-p~~~~~~a~~~~~------~~~~~Y~~~~~~~~L~~~la~~~----g~~~~--~v~~~g~~a~~~~l~ 67 (333)
T PRK10534 1 MIDLRSDTVTR-PSRAMLEAMMAAP------VGDDVYGDDPTVNALQDYAAELS----GKEAA--LFLPTGTQANLVALL 67 (333)
T ss_pred CcccccccCCC-CCHHHHHHHHhcc------CCCcccCCCHHHHHHHHHHHHHh----CCCeE--EEeCchHHHHHHHHH
Confidence 48899999877 7788888887643 33457878889999999999997 66543 466666655554 66
Q ss_pred HhcCCCCEEEEeCCCChh-hhhh-HHHhCCcccccccccccceEEEeecCccCCcccCCC---C--CC------CccEEE
Q 045431 144 IVFGSNVTMAVQDPSYPA-YVDS-SVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS---T--VA------RTDIIF 210 (433)
Q Consensus 144 ~l~~~gd~Vl~~~p~~~~-~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~------~~~~i~ 210 (433)
.++.+||+|+++.|+|.. +... ....+. ..++.++.+.+ +..+++ + .+ ++++|+
T Consensus 68 ~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~--~~~d~~~l~~~i~~~~~~~~~~~lv~ 134 (333)
T PRK10534 68 SHCERGEEYIVGQAAHNYLYEAGGAAVLGS-----------IQPQPIDAAAD--GTLPLDKVAAKIKPDDIHFARTRLLS 134 (333)
T ss_pred HhcCCCCeeEEechhhhhHhcCCchHHhcC-----------ceEEeecCCCC--CCCCHHHHHHhhcccCcCcccceEEE
Confidence 778999999999888853 3221 233331 24555655432 333322 1 12 578999
Q ss_pred EcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccccccee-ee
Q 045431 211 FCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLG-WT 289 (433)
Q Consensus 211 l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G-~l 289 (433)
++||+ ||.+++.+++++|+++|++|+++||+||+|..........+...+....++++ .||||.+|++ +| |+
T Consensus 135 l~np~--~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~~~~~~~~~--~s~SK~~~~~---~G~~~ 207 (333)
T PRK10534 135 LENTH--NGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKEITQYCDSFT--ICLSKGLGTP---VGSLL 207 (333)
T ss_pred EecCC--CCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHHHHhcCCEEE--EEeEcCCCCc---ccceE
Confidence 99766 59999999999999999999999999999873221100112222222223333 4899988754 68 68
Q ss_pred eccccccccCCcchhHHHHHHHhhccCC--CcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCC
Q 045431 290 VIPKELLFSDGFPVAKDFNRIVCTCFNG--ASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGK 367 (433)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~ 367 (433)
+++++++ +.+..+....... .+.+.|.++.+.+++. ....++..++++++.+.|+++|+.+.++
T Consensus 208 ~~~~~~i--------~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~-----~~~~~~~~~~r~~l~~~L~~~g~~~~~~- 273 (333)
T PRK10534 208 VGNRDYI--------KRARRWRKMTGGGMRQAGILAAAGLYALKHN-----VARLQEDHDNAAWLAEQLREAGADVMRQ- 273 (333)
T ss_pred EcCHHHH--------HHHHHHHHHhCCchhhHHHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHhCCCccCCC-
Confidence 8888885 6666555433211 2345676666666421 2233344556789999999999988766
Q ss_pred CccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 368 NAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 368 ~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
.++|+|+++++....++ .++++++||.++|+. ++|++. ..+.+++++++++|++++
T Consensus 274 ~~nfv~~~~~~~~~~~~-~~~l~~~gi~v~~~~--------~~rl~~~~r~t~e~~~~~~~~l~~~~ 331 (333)
T PRK10534 274 DTNMLFVRVGEEQAAAL-GEYMRERNVLINASP--------IVRLVTHLDVSREQLAEVVAHWRAFL 331 (333)
T ss_pred CceEEEEECCchhHHHH-HHHHHHcCeeecCCc--------eEEEEEEeCCCHHHHHHHHHHHHHHh
Confidence 79999999974334444 456667799998862 478885 358999999999999875
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-29 Score=243.68 Aligned_cols=336 Identities=18% Similarity=0.167 Sum_probs=227.7
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCC----CCCCCHHHHHHHHHHHhccCCC-CCCcEEEcCChHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYG----AEQGEKPLRAAIASTFYKDLGI-EEGDIFVSDGAKCD 138 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~----~~~g~~~lr~~la~~l~~~~~~-~~~~i~~~~G~~~a 138 (433)
+.|.|..+... +.|+.+.+++.+.+...........|. ......++|+.+++++ ++ ++++|++|+|++++
T Consensus 16 ~~iyld~a~~~-~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----g~~~~~~i~~t~g~t~~ 90 (398)
T TIGR03392 16 GTVYLDSAATA-LKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFL----NAPDAENIVWTRGTTES 90 (398)
T ss_pred CeEEeeCcccc-CCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHh----CCCCCCeEEEeCChHHH
Confidence 47888888765 578889999988875432111111110 0123567889999987 77 47899999999999
Q ss_pred HHHH-HHh----cCCCCEEEEeCCCChhh----hhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCc
Q 045431 139 ISRL-QIV----FGSNVTMAVQDPSYPAY----VDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VART 206 (433)
Q Consensus 139 l~~l-~~l----~~~gd~Vl~~~p~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~ 206 (433)
++++ .++ +++||+|++++|+|++. ....+..| .+++.++.+.+.....+ +++ .+++
T Consensus 91 l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g------------~~v~~v~~~~~~~~~~~~l~~~i~~~t 158 (398)
T TIGR03392 91 INLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTG------------AKVVKLPIGADLLPDIRQLPELLTPRT 158 (398)
T ss_pred HHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcC------------cEEEEEecCCCCCcCHHHHHHHhccCc
Confidence 9974 555 48999999999999763 33345556 47888887654322221 222 3678
Q ss_pred cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccce
Q 045431 207 DIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRL 286 (433)
Q Consensus 207 ~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~ 286 (433)
+++++++|+||||.+++ +++|.++|+++|+++|+|++|+.... +..+... +..+++.|++|.+|.+| +
T Consensus 159 ~lv~i~~~~n~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~~~~---~~~~~~~----~~d~~~~s~~K~~gp~G--~ 226 (398)
T TIGR03392 159 RILALGQMSNVTGGCPD---LARAITLAHQYGAVVVVDGAQGVVHG---PPDVQAL----DIDFYAFSGHKLYGPTG--I 226 (398)
T ss_pred eEEEEECccccccccCC---HHHHHHHHHHcCCEEEEEhhhhcCCC---CCChhhc----CCCEEEEecccccCCCc--e
Confidence 99999999999999988 67899999999999999999974322 2223222 22378889999988555 8
Q ss_pred eeeeccccccccCCcchh----------------HHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHH
Q 045431 287 GWTVIPKELLFSDGFPVA----------------KDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTD 350 (433)
Q Consensus 287 G~l~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 350 (433)
||++++++++..-.+-.. +.-.++...+.+..+..+..++++++.+.+ +++..++.++.++
T Consensus 227 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g---~~~i~~~~~~l~~ 303 (398)
T TIGR03392 227 GVLYGKTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDID---IAAAEAWSVSLAD 303 (398)
T ss_pred EEEEEcHHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhC---HHHHHHHHHHHHH
Confidence 999998887522110000 000111111111122334444444444333 3567788888889
Q ss_pred HHHHHHhhc-CCeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCC------CCCCeEEEee--ccChhHH
Q 045431 351 IIVETFNSL-GFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGP------GGEGFIRVSA--FGHRGNV 421 (433)
Q Consensus 351 ~l~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~------~~~~~iRi~~--~~~~~~l 421 (433)
.+.+.|+++ |+.+..+..+.++++.+++....++...| +++||.+++|..|.. ..++++|+|+ +++++|+
T Consensus 304 ~l~~~l~~l~g~~~~~~~~~~i~~~~~~~~~~~~l~~~L-~~~gI~v~~g~~~~~~~~~~~g~~~~iRvS~~~~~t~~ei 382 (398)
T TIGR03392 304 LAEERLAQLPGFRSFRCPGSSLLAFDFAGVHHSDLAALL-AESGIALRAGQHCAQPLMAALGVSGTLRASFAPYNTQQDV 382 (398)
T ss_pred HHHHHHhcCCCeEEeCCCCCcEEEEEeCCcCHHHHHHHH-HhCCEEEecCccchHHHHHHhCCCCEEEEEeeccCCHHHH
Confidence 999999887 78776555566777788766666777665 456999999986642 1247899995 6799999
Q ss_pred HHHHHHHHHhh
Q 045431 422 LEACKRFKHLY 432 (433)
Q Consensus 422 ~~~l~~l~~~l 432 (433)
+.+++.|++++
T Consensus 383 ~~l~~~l~~~~ 393 (398)
T TIGR03392 383 DALVDAVGAAL 393 (398)
T ss_pred HHHHHHHHHHH
Confidence 99999998875
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-29 Score=242.17 Aligned_cols=336 Identities=17% Similarity=0.168 Sum_probs=227.3
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCC----CCCCCCHHHHHHHHHHHhccCCC-CCCcEEEcCChHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGY----GAEQGEKPLRAAIASTFYKDLGI-EEGDIFVSDGAKCD 138 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y----~~~~g~~~lr~~la~~l~~~~~~-~~~~i~~~~G~~~a 138 (433)
+.+.|..+... +.|+.+.+++.+.+...........+ .......++|+.+++++ ++ ++++|++|+|++++
T Consensus 19 ~~~yld~a~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----g~~~~~~i~~~~~~t~~ 93 (401)
T PRK10874 19 AGVYLDSAATA-LKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLL----NAPDAKNIVWTRGTTES 93 (401)
T ss_pred ceEEEeCCccc-CCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHc----CCCCCCEEEEECCHHHH
Confidence 46888887765 57788999998888643210111111 00223667888888887 77 78999999999999
Q ss_pred HHHH-HHh----cCCCCEEEEeCCCChhh----hhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCc
Q 045431 139 ISRL-QIV----FGSNVTMAVQDPSYPAY----VDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VART 206 (433)
Q Consensus 139 l~~l-~~l----~~~gd~Vl~~~p~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~ 206 (433)
++++ ..+ +++||+|++.+|+|++. ....+..| .+++.++.+.+..++.+ +++ .+++
T Consensus 94 i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g------------~~v~~v~~~~~~~~d~~~l~~~i~~~t 161 (401)
T PRK10874 94 INLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTG------------AKVVKLPLGADRLPDVDLLPELITPRT 161 (401)
T ss_pred HHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhC------------CEEEEEecCCCCcCCHHHHHHhcCcCc
Confidence 9974 555 47999999999999764 33334456 47788887643222211 222 3688
Q ss_pred cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccce
Q 045431 207 DIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRL 286 (433)
Q Consensus 207 ~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~ 286 (433)
+++++++|+||||.+++ +++|+++|+++|+++|+|++|+.... +..+... +..+++.|++|.+|.+| +
T Consensus 162 ~lv~i~~~~n~tG~~~~---~~~i~~l~~~~g~~~ivD~a~~~g~~---~~~~~~~----~~d~~~~s~~K~~gp~G--~ 229 (401)
T PRK10874 162 RILALGQMSNVTGGCPD---LARAITLAHQAGMVVMVDGAQGAVHF---PADVQAL----DIDFYAFSGHKLYGPTG--I 229 (401)
T ss_pred EEEEEeCCcccccCcCC---HHHHHHHHHHcCCEEEEECCcccccc---cCCchhc----CCCEEEEecccccCCCc--c
Confidence 99999999999999998 67889999999999999999974222 2223222 23488899999988666 6
Q ss_pred eeeeccccccccCCcch----------------hHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHH
Q 045431 287 GWTVIPKELLFSDGFPV----------------AKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTD 350 (433)
Q Consensus 287 G~l~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 350 (433)
||++++++.+..-.+.. .....++.. .+++.+.+.++.++++.......++..++.++.++
T Consensus 230 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~~ 306 (401)
T PRK10874 230 GVLYGKSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEA---GTPNVAGVIGLSAALEWLADIDINQAESWSRSLAT 306 (401)
T ss_pred EEEEEchHHHhcCCCeecCCcceEeeccCccCCCCChhhccC---CCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 99999888753211000 000011111 12343444444444431111223566778888889
Q ss_pred HHHHHHhhc-CCeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCC------CCCCeEEEee--ccChhHH
Q 045431 351 IIVETFNSL-GFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGP------GGEGFIRVSA--FGHRGNV 421 (433)
Q Consensus 351 ~l~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~------~~~~~iRi~~--~~~~~~l 421 (433)
++.+.|+++ |+.+..+..+.++++.+++....++...| .++||.+.+|..|.. ...+++|+|+ +++++|+
T Consensus 307 ~l~~~l~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~L-~~~gI~v~~g~~~~~~~~~~~g~~~~iRiS~~~~nt~edi 385 (401)
T PRK10874 307 LAEDALAKLPGFRSFRCQDSSLLAFDFAGVHHSDLVTLL-AEYGIALRAGQHCAQPLLAALGVTGTLRASFAPYNTQSDV 385 (401)
T ss_pred HHHHHHhcCCCEEEeCCCCCcEEEEEECCcCHHHHHHHH-HHCCcEEeccccchHHHHHHhCCCCEEEEEecccCCHHHH
Confidence 999999887 88877655666777788766666666555 556999999987642 1257899996 5699999
Q ss_pred HHHHHHHHHhh
Q 045431 422 LEACKRFKHLY 432 (433)
Q Consensus 422 ~~~l~~l~~~l 432 (433)
+.+++.|++++
T Consensus 386 d~ll~al~~~~ 396 (401)
T PRK10874 386 DALVNAVDRAL 396 (401)
T ss_pred HHHHHHHHHHH
Confidence 99999998875
|
|
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-29 Score=221.03 Aligned_cols=331 Identities=20% Similarity=0.285 Sum_probs=244.9
Q ss_pred ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHHHHHHHHhc--CCCCEE
Q 045431 77 IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDISRLQIVF--GSNVTM 152 (433)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~al~~l~~l~--~~gd~V 152 (433)
+|..+.+.....+...+ .+...|+.++|.+-+|+.+|+|+.+ |+.++|++|++|+|++.++..++.++ .+.+-|
T Consensus 87 fp~Dai~RA~~~L~~~g--Gs~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~~~~~Gv 164 (475)
T KOG0258|consen 87 FPTDAIKRAKRILNDCG--GSLGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIAGKKTGV 164 (475)
T ss_pred CCHHHHHHHHHHHHhcC--CcccccccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhcCCCCce
Confidence 67777777777776654 3566899999999999999999985 77789999999999999999865554 567889
Q ss_pred EEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC----------CCCccEEEEcCCCCccccCC
Q 045431 153 AVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST----------VARTDIIFFCSPNNPTGAAA 222 (433)
Q Consensus 153 l~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~i~l~~p~nPtG~~~ 222 (433)
+++-|.|+-|...+..+|. ..+.+.++.+.+|..+.+. .-+++++++.||.||||+++
T Consensus 165 liPiPQYPLYsAti~l~~~------------~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvl 232 (475)
T KOG0258|consen 165 LIPIPQYPLYSATISLLGG------------TQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVL 232 (475)
T ss_pred EeecCCCchhHHHHHHhCC------------cccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhh
Confidence 9999999999999999994 6777788888888877432 24789999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeccccccccCC--CCCccc----ccCC-CCcc--eEEEecccccc-cccccceeeeecc
Q 045431 223 TREQLTRLVQFAKDNGSIIVYDSAYALYISDD--NPRSIF----EIPG-AKEV--AIETSSFSKYA-GFTGVRLGWTVIP 292 (433)
Q Consensus 223 ~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~--~~~~~~----~~~~-~~~~--vi~i~S~sK~~-~~~G~r~G~l~~~ 292 (433)
|.+.+++|+.+|.++++.++.||+|.+-.+.+ .+.+++ ++.. .+++ .+.+.|.||.+ |=.|.|-||+-.-
T Consensus 233 s~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~ 312 (475)
T KOG0258|consen 233 SEENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESL 312 (475)
T ss_pred cHHHHHHHHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecc
Confidence 99999999999999999999999999977764 344443 2221 1223 46678889965 2357888986432
Q ss_pred ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCc-----CCh----hHHHHHHHHHHHHHHHHHHHHhhc-CCe
Q 045431 293 KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSP-----EGF----KAVHEVIGFYKENTDIIVETFNSL-GFK 362 (433)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-----~~~----~~~~~~~~~~~~~~~~l~~~l~~~-g~~ 362 (433)
.-. +++.+.+.+.... .-.++...|...-....- ... ...+.....++++...+.+.++++ |+.
T Consensus 313 n~~-----prv~~qi~Kl~si-~lc~~V~GQ~~vdl~VnPP~Pgd~Sy~~~~~Ekd~il~~l~~ra~l~~~~~ns~~gi~ 386 (475)
T KOG0258|consen 313 NRD-----PRVKQQIKKLASI-KLCPQVSGQKLVDLVVNPPKPGDPSYDLFSSEKDGILSSLRSRAKLTEDAFNSLEGIS 386 (475)
T ss_pred cCC-----hhHHHHHHHHHhh-hhcCCccchhhhceecCCCCCCCcchhhhhhhhHhHHHHHHHHhHHHHHHHhhcCcee
Confidence 111 1112333333222 233566677755555541 111 234666778889999999999998 999
Q ss_pred eecCCCccEEEEECC--C-----------CChHHHHHHHHHcCCeEecCCCCCCC-CCCCeEEEeeccChhHHHHHHHHH
Q 045431 363 VYGGKNAPYVWVQFP--G-----------RSSWDVFSEILEKTHVVTTPGSGFGP-GGEGFIRVSAFGHRGNVLEACKRF 428 (433)
Q Consensus 363 ~~~~~~g~~~~~~~~--~-----------~~~~~~~~~l~~~~gi~v~~g~~f~~-~~~~~iRi~~~~~~~~l~~~l~~l 428 (433)
..++++++|++-++. . ..+.-...+||+..||.+.||+.|+. .|.-|+|.++-... + +.++++
T Consensus 387 cn~~qGAMY~fP~i~lP~kaie~A~~~~~~PD~FYc~~LLe~tGIcvVPGSGFGQ~~GtyH~R~TiLp~~--~-~~i~~~ 463 (475)
T KOG0258|consen 387 CNPVQGAMYLFPQISLPPKAIEAAKALGIAPDEFYCLKLLEATGICVVPGSGFGQKEGTYHFRTTILPPG--L-EIIEKF 463 (475)
T ss_pred eccCccceeecccccCCHHHHHHHHHhCCCCcHHHHHHHHHhcCeEEecCCCCCCCCceeEEEEeecCch--h-HHHHHH
Confidence 999999999987764 1 13344567889999999999999984 45678999964333 3 555555
Q ss_pred HH
Q 045431 429 KH 430 (433)
Q Consensus 429 ~~ 430 (433)
++
T Consensus 464 ~~ 465 (475)
T KOG0258|consen 464 KK 465 (475)
T ss_pred HH
Confidence 54
|
|
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=213.80 Aligned_cols=323 Identities=18% Similarity=0.286 Sum_probs=237.0
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR 141 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~ 141 (433)
++.++.++..+.+.-++|+-.+ + -..| +..-...++.++++- -+.++|+|+++-|+.+.+++
T Consensus 40 G~~iv~ld~~e~~ryPdP~q~e-f------------k~~~-~d~rnk~ls~a~~~d----kpLt~dnic~GvGsDE~ID~ 101 (375)
T KOG0633|consen 40 GRDIVKLDANENPRYPDPEQME-F------------KYVY-PDPRNKRLSDALAQD----KPLTSDNICVGVGSDELIDL 101 (375)
T ss_pred CCCceEeccccCCCCcCHHHcc-c------------cccc-CCcccchhhhhcccC----CCCCccceEEecCcHHHHHH
Confidence 4468899888866444444321 0 1123 233456666666654 26789999999999999998
Q ss_pred -HHHhcCCC-CEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-----CCCCCCccEEEEcCC
Q 045431 142 -LQIVFGSN-VTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-----LSTVARTDIIFFCSP 214 (433)
Q Consensus 142 -l~~l~~~g-d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~l~~p 214 (433)
++..|.|| ++|+...|+|+.|.-.....+ +.++.+|.+++..+..+ ++....+|++++++|
T Consensus 102 iiR~~c~PGkeKIl~cPPtysMY~v~A~iNd------------~eVvkvpl~pdF~lnvdai~evl~~ds~iK~~F~tSP 169 (375)
T KOG0633|consen 102 IIRCVCDPGKEKILDCPPTYSMYVVDAAIND------------AEVVKVPLNPDFSLNVDAIAEVLELDSKIKCIFLTSP 169 (375)
T ss_pred HHhheecCCccceeecCCcceeEEEEeecCC------------ceEEEecCCCCccccHHHHHHHHhccccceEEEEcCC
Confidence 57788999 899999999999876555555 47888888774333222 122358999999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecccc
Q 045431 215 NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKE 294 (433)
Q Consensus 215 ~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~ 294 (433)
+||||..++.+++++|++.=. +.++++||+|-+|...+..-++. ...+|++++.+|||+||++|+|+||...+..
T Consensus 170 gNPtg~~ik~~di~KiLe~p~--nglVVvDEAYidFsg~~S~~~lV---~kYpNLivlqTlSKsfGLAGiRvG~~~~~~~ 244 (375)
T KOG0633|consen 170 GNPTGSIIKEDDILKILEMPD--NGLVVVDEAYIDFSGVESRMKLV---KKYPNLIVLQTLSKSFGLAGIRVGYGAFPLS 244 (375)
T ss_pred CCCCcccccHHHHHHHHhCCC--CcEEEEeeeeEeeccccccchHh---HhCCceeehhhhhhhcCcceeEeecccccHH
Confidence 999999999999999998533 79999999999987643322221 2246789999999999999999999999998
Q ss_pred ccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CC-eeecCCCccEE
Q 045431 295 LLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GF-KVYGGKNAPYV 372 (433)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~-~~~~~~~g~~~ 372 (433)
+. ..+.+.++.. ..|.+...+|++++.+...+.++..+..+-+.+.++...|.+. ++ ++.++..++|+
T Consensus 245 ia--------~iln~~KaPY--NiS~~~s~~AL~Als~~n~kkme~~rdaiv~er~RL~keLt~v~~~~~~~gg~daNFi 314 (375)
T KOG0633|consen 245 IA--------EILNRAKAPY--NISVAGSVAALAALSDSNGKKMEDVRDAIVRERERLFKELTEVPFLNDYPGGSDANFI 314 (375)
T ss_pred HH--------HHHHhccCCc--cccchhHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHhhcCccccCCCCcccccEE
Confidence 84 5566555433 3677888889999997666788999999999999999999987 43 34566788999
Q ss_pred EEECCCC---ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHh
Q 045431 373 WVQFPGR---SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHL 431 (433)
Q Consensus 373 ~~~~~~~---~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~ 431 (433)
.+++.+. .+..+..+++.+.||.++--.. ...-.|++|++.+ ++|+-.-+++.|+++
T Consensus 315 Li~v~~~~n~~akkly~q~at~~gVvVRfrgs-e~~c~G~lRitvG-t~EentvL~k~~K~~ 374 (375)
T KOG0633|consen 315 LIEVTGGDNGMAKKLYKQDATKMGVVVRFRGS-EEGCKGYLRITVG-TPEENTVLMKCLKQF 374 (375)
T ss_pred EEEEcCCCcHHHHHHHHHHHHhcceEEEEcCC-ccccceeEEEEcC-CcccchHHHHHHHhh
Confidence 9998732 3456777777788999963110 1223689999974 445555666666664
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=235.86 Aligned_cols=331 Identities=18% Similarity=0.163 Sum_probs=218.1
Q ss_pred ceEEecCCCC-CCCChHHHHHHHHHHHhhcccCCCCCCC----CCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHH
Q 045431 64 EVISLGIGDT-TEPIPEVITSALAKRSYALSTQEGYSGY----GAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCD 138 (433)
Q Consensus 64 ~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~Y----~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~a 138 (433)
++++|+.+++ ..+.++++.+++.+.+.++.+ ....| +......++++.+++++ +.+ +.|++++| +++
T Consensus 2 ~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~la~~~----~~~-~~iv~~sg-~~a 73 (349)
T cd06454 2 KVLNFCSNDYLGLANHPEVIEAAKEALDKYGV--GAGGSRLISGTSDLHEELEEELAEFH----GKE-AALVFSSG-YAA 73 (349)
T ss_pred CceecccCCccccCCCHHHHHHHHHHHHHhCC--CCCCcCeecCCchHHHHHHHHHHHHh----CCC-CEEEeccH-HHH
Confidence 3677877775 455679999999999976432 22223 22334466677777665 553 45555555 556
Q ss_pred HHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCC---CCccEEEEcCC
Q 045431 139 ISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV---ARTDIIFFCSP 214 (433)
Q Consensus 139 l~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~l~~p 214 (433)
+.+ +..++++||.|++++|+|+++...++..|. +++.++..+...+...+... .+++++++++|
T Consensus 74 ~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~------------~~~~~~~~~~~~le~~i~~~~~~~~~~~v~~~~~ 141 (349)
T cd06454 74 NDGVLSTLAGKGDLIISDSLNHASIIDGIRLSGA------------KKRIFKHNDMEDLEKLLREARRPYGKKLIVTEGV 141 (349)
T ss_pred HHHHHHHhcCCCCEEEEehhhhHHHHHHHHHcCC------------ceEEecCCCHHHHHHHHHHhhccCCCeEEEEecc
Confidence 554 677789999999999999998887777773 55555432111111111111 35677777799
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccC-CCCcceEEEecccccccccccceeeeeccc
Q 045431 215 NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIP-GAKEVAIETSSFSKYAGFTGVRLGWTVIPK 293 (433)
Q Consensus 215 ~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~-~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~ 293 (433)
+||||+..+ +++|+++|+++|+++|+|++|+..........+..++ ...+.+++++|+||+++.+| ||+++++
T Consensus 142 ~~~tG~~~~---~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g---G~i~~~~ 215 (349)
T cd06454 142 YSMDGDIAP---LPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGAVG---GYIAGSK 215 (349)
T ss_pred ccCCCCccC---HHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcccC---CEEECCH
Confidence 999999877 7888999999999999999997432221111111111 12356799999999998545 9999887
Q ss_pred cccccCCcchhHHHHHHHh-h-ccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccE
Q 045431 294 ELLFSDGFPVAKDFNRIVC-T-CFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPY 371 (433)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~ 371 (433)
+++ +.+..... . .....+...+.++.+.++.... .+..+++++++++.+.+.|.++|+....+.++.+
T Consensus 216 ~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~ 285 (349)
T cd06454 216 ELI--------DYLRSYARGFIFSTSLPPAVAAAALAALEVLQG--GPERRERLQENVRYLRRGLKELGFPVGGSPSHII 285 (349)
T ss_pred HHH--------HHHHHhchhhhccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcE
Confidence 764 33332211 1 1123455556556666542211 3567889999999999999988887766555555
Q ss_pred EEEECC-CCChHHHHHHHHHcCCeEecCCCCCC-CCCCCeEEEeec--cChhHHHHHHHHHHHh
Q 045431 372 VWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFG-PGGEGFIRVSAF--GHRGNVLEACKRFKHL 431 (433)
Q Consensus 372 ~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~-~~~~~~iRi~~~--~~~~~l~~~l~~l~~~ 431 (433)
.++.++ +....++...++++ ||.+.++.... ..+.+++|+++. .+++++++++++|+++
T Consensus 286 ~~~~~~~~~~~~~~~~~L~~~-gI~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 286 PPLIGDDPAKAVAFSDALLER-GIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred EEEeCCChHHHHHHHHHHHhC-CceEEEecCCccCCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 566554 34456777777766 99998863211 223578999974 5899999999999864
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-28 Score=236.61 Aligned_cols=340 Identities=12% Similarity=0.126 Sum_probs=222.5
Q ss_pred HhcCCCCceEEecCCCCC--CCC-hHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcC
Q 045431 57 MLKYPDAEVISLGIGDTT--EPI-PEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSD 133 (433)
Q Consensus 57 ~~~~~~~~~i~l~~g~~~--~~~-~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~ 133 (433)
....++...|||..|.+. +.. ++.+.+++.+++.... .....| ..+++.++++++.+..+ .+++++++
T Consensus 33 ~~d~dg~~~iD~~~g~~~~~lG~~~p~v~~a~~~~~~~~~--~~~~~~-----~~~~~~~la~~l~~~~~--~~~v~~~~ 103 (396)
T PRK02627 33 LWDDDGKEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAKLI--HTSNLY-----YIEPQEELAEKLVELSG--MDKVFFCN 103 (396)
T ss_pred EEeCCCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhcc--cccccc-----CCHHHHHHHHHHHhhcC--CCEEEECC
Confidence 334567789999887653 333 5889999999886532 111123 36888888888876433 47999999
Q ss_pred ChHHHHHH-HHHhcCCC-------CEEEEeCCCChhhhhhHHHhCCcccccc-cccccceEEEeecCccCCcccCCCCCC
Q 045431 134 GAKCDISR-LQIVFGSN-------VTMAVQDPSYPAYVDSSVIMGQTGEFQK-DAEKYGKIEYMRCTAENGFFPDLSTVA 204 (433)
Q Consensus 134 G~~~al~~-l~~l~~~g-------d~Vl~~~p~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (433)
|+++++.+ +..+...+ ++|++.+++|.++.......+....+.. .......+..++.++...+...+ .+
T Consensus 104 gg~eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i--~~ 181 (396)
T PRK02627 104 SGAEANEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLVEGFIYVPFNDIEALKAAI--TD 181 (396)
T ss_pred CcHHHHHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccCCCCCCCceEeCCCCHHHHHHhc--CC
Confidence 99999997 44333222 7899999999887655554442111000 00000011222211111111111 25
Q ss_pred CccEEEEcCCCCccc-cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccc
Q 045431 205 RTDIIFFCSPNNPTG-AAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTG 283 (433)
Q Consensus 205 ~~~~i~l~~p~nPtG-~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G 283 (433)
++++|+++.++||+| .+++.+.+++|.++|++||++||+||+|.++.+.+.+.+.......++ +.||||.++ +|
T Consensus 182 ~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~~~~~~~~~pd----i~t~sK~~~-~G 256 (396)
T PRK02627 182 KTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQHYGIEPD----IMTLAKGLG-GG 256 (396)
T ss_pred CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCceeeehhcCCCCC----EEEEcchhh-CC
Confidence 788888888899999 688999999999999999999999999998766554332222221223 347999998 99
Q ss_pred cceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhh----c
Q 045431 284 VRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNS----L 359 (433)
Q Consensus 284 ~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~ 359 (433)
+|+||++++++++ +.+.......+.+.+++.|.++.++++.... ++..++++++.+.+.+.|.+ +
T Consensus 257 ~rig~~~~~~~~~--------~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~ 325 (396)
T PRK02627 257 VPIGAVLAKEKVA--------DVFTPGDHGSTFGGNPLACAAALAVIEIIEE---EGLLENAAEVGEYLRAKLRELLEKY 325 (396)
T ss_pred cccEEEEEcHHHH--------hccCCCCCCCCCCCCHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999998874 4443333445566899999999888863222 22233444444444444433 3
Q ss_pred C-CeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 360 G-FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 360 g-~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
+ +.... ..|.++|+.++ .+..++...++++ ||.+.|+. .+++|+++ ..+++++++++++|++++
T Consensus 326 ~~~~~~~-~~g~~~~i~~~-~~~~~~~~~l~~~-Gv~v~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~~l 392 (396)
T PRK02627 326 PGIKEVR-GLGLMIGIELD-RPAAEIVKKALEK-GLLINVTG------DNVLRLLPPLIISKEEIDEAVDRLEEVL 392 (396)
T ss_pred CCeeeec-cCcEEEEEEec-CcHHHHHHHHHHC-CeEEeecC------CCEEEEECCcccCHHHHHHHHHHHHHHH
Confidence 2 22222 36788999984 3566777777766 99998863 36799984 568999999999998876
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=229.81 Aligned_cols=331 Identities=14% Similarity=0.122 Sum_probs=231.8
Q ss_pred CCCceEEecCCCC--CCCChH---HHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCCh
Q 045431 61 PDAEVISLGIGDT--TEPIPE---VITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGA 135 (433)
Q Consensus 61 ~~~~~i~l~~g~~--~~~~~~---~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~ 135 (433)
.+-+++.|..+++ |+..+. .+.++..+++.. +...|++..|.++|++++++++ +. +++++|+|+
T Consensus 9 ~g~n~~~l~~~~v~iDlltds~t~ams~~~~~a~~~-----gd~~Y~~~~g~~~Leeaia~~~----g~--~~vv~t~~G 77 (431)
T cd00617 9 AGYNVFLLRSEDVYIDLLTDSGTGAMSDYQWAAMML-----GDEAYAGSKSFYDLEDAVQDLF----GF--KHIIPTHQG 77 (431)
T ss_pred cCCCEEeCCCCCcCCCCCCCCCcHHHHHHHHHHHHh-----CCCccCCCCCHHHHHHHHHHHH----CC--CeEEEcCCH
Confidence 4557899999998 776664 566666666652 3346999999999999999998 43 589999999
Q ss_pred HHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCC------cc--cCCCC----
Q 045431 136 KCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENG------FF--PDLST---- 202 (433)
Q Consensus 136 ~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~---- 202 (433)
++++.+ +..+++|||.| +++|.|..+...+...|. .++.++.+.+.+ +. .++++
T Consensus 78 t~Al~la~~al~~pGD~V-~~~~~f~~~~~~i~~~Ga------------~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~ 144 (431)
T cd00617 78 RGAENILFSILLKPGRTV-PSNMHFDTTRGHIEANGA------------VPVDLVIDEAHDAQELIPFKGNIDVAKLEKL 144 (431)
T ss_pred HHHHHHHHHHhCCCCCEE-ccCCcccchHHHHHhCCC------------EeEEEecccccccccccCCCCCcCHHHHHHH
Confidence 999987 57789999987 689999999888888994 677777754322 22 33221
Q ss_pred -C----CCccEEEEcCCCCcc-ccCCCHHHHHHHHHHHHHcCCEEEEecccccc--cc-----CC-CCCcccccCCCCcc
Q 045431 203 -V----ARTDIIFFCSPNNPT-GAAATREQLTRLVQFAKDNGSIIVYDSAYALY--IS-----DD-NPRSIFEIPGAKEV 268 (433)
Q Consensus 203 -~----~~~~~i~l~~p~nPt-G~~~~~~~~~~i~~~a~~~~~~li~De~~~~~--~~-----~~-~~~~~~~~~~~~~~ 268 (433)
. .++++|++++|+||+ |+++|.+++++|.++|++||++||+|+++... .+ ++ ...++.+ .
T Consensus 145 I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~e------i 218 (431)
T cd00617 145 IDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAE------I 218 (431)
T ss_pred hCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHH------H
Confidence 1 247889999999998 99999999999999999999999999996521 11 11 1223322 2
Q ss_pred eEEEecccccccccccc------eeeeecccc-ccccCCcchhHHHHHHH----hhcc-CCCcHHHHHHHHHhcCcCChh
Q 045431 269 AIETSSFSKYAGFTGVR------LGWTVIPKE-LLFSDGFPVAKDFNRIV----CTCF-NGASNISQAGGLACLSPEGFK 336 (433)
Q Consensus 269 vi~i~S~sK~~~~~G~r------~G~l~~~~~-~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~q~~~~~~l~~~~~~ 336 (433)
++.++|++|.+.++|+| .||++++++ ++ +.++... .... .+.+.....++...|+....
T Consensus 219 ~~e~~s~sd~~~mS~~K~~~~~~GG~i~~~d~~l~--------~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~~- 289 (431)
T cd00617 219 AREMFSYADGCTMSAKKDGLVNIGGFLALRDDELY--------EEARQRVVLYEGFVTYGGMAGRDMEALAQGLREAVE- 289 (431)
T ss_pred HHHhhccCCEEEEEeecCCCCccceEEEeCcHHHH--------HHHHHhccccCCccccccccHHHHHHHHHHHHhccc-
Confidence 35567888888888887 569999875 53 4444321 1111 12222322333325542211
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCC---------CChHHHHHHHHHcCCeEecC-CCCC---C
Q 045431 337 AVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPG---------RSSWDVFSEILEKTHVVTTP-GSGF---G 403 (433)
Q Consensus 337 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~---------~~~~~~~~~l~~~~gi~v~~-g~~f---~ 403 (433)
.+.+.+.++ +++++.+.|++.|+.+..|.+|+++|++++. .++.++..+|+++.||.+.- |... .
T Consensus 290 -~~~l~~~~~-~r~~l~~~L~~~G~~v~~P~Ggh~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~~~ 367 (431)
T cd00617 290 -EDYLRHRVE-QVRYLGDRLDEAGVPIVEPAGGHAVFIDAREFLPHIPQEQFPAQALAAELYLEAGVRAVELGIFSAGRD 367 (431)
T ss_pred -HHHHHHHHH-HHHHHHHHHHHCCCCccCCCcceEEEEEhHHhcCCCCcccCcHHHHHHHHHHHcCeeEEeecceecccC
Confidence 133333444 5589999999999999999999999999762 14778888999999999643 4421 1
Q ss_pred CC-------CCCeEEEee---ccChhHHHHHHHHHHHhh
Q 045431 404 PG-------GEGFIRVSA---FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 404 ~~-------~~~~iRi~~---~~~~~~l~~~l~~l~~~l 432 (433)
+. .-..+||++ .-+.++++...++|..++
T Consensus 368 ~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~ 406 (431)
T cd00617 368 PNTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALY 406 (431)
T ss_pred CCCCcccCCccceeEEeccccccCHHHHHHHHHHHHHHH
Confidence 11 136799996 338899999998888765
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-28 Score=233.49 Aligned_cols=337 Identities=14% Similarity=0.133 Sum_probs=218.4
Q ss_pred cCCCCceEEecCCCC--CC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCCh
Q 045431 59 KYPDAEVISLGIGDT--TE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGA 135 (433)
Q Consensus 59 ~~~~~~~i~l~~g~~--~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~ 135 (433)
..++...|||..|.. .+ +.++.+.+++.+++..... ....| +.....+|.+.+++++ +. +++++++|+
T Consensus 23 ~~~g~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~-~~~~~~~l~~~la~~~----g~--~~~~~~~sg 93 (379)
T TIGR00707 23 DVNGKEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLVH--VSNLY-YTEPQEELAEKLVEHS----GA--DRVFFCNSG 93 (379)
T ss_pred eCCCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhccc--ccccc-CCHHHHHHHHHHHhhC----CC--CEEEEeCCc
Confidence 345678999988632 23 3558999999998876431 11234 3333455555555553 54 499999999
Q ss_pred HHHHHHHHHhc----C----CCCEEEEeCCCChhhhhhHHHhCCcccccccc-cccceEEEeecCccCCcccCCCC--CC
Q 045431 136 KCDISRLQIVF----G----SNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDA-EKYGKIEYMRCTAENGFFPDLST--VA 204 (433)
Q Consensus 136 ~~al~~l~~l~----~----~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~ 204 (433)
++++.++..++ . +||+|++.+|+|+++.......+....+.... ....+...++.++ ..++++ .+
T Consensus 94 ~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----~~~l~~~~~~ 169 (379)
T TIGR00707 94 AEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYND----IESLKKAIDD 169 (379)
T ss_pred HHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceeeCCCC----HHHHHHHhhh
Confidence 99988643322 2 37999999999998876666665432210000 0000111222111 111111 24
Q ss_pred CccEEEEcCCCCccccC-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccc
Q 045431 205 RTDIIFFCSPNNPTGAA-ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTG 283 (433)
Q Consensus 205 ~~~~i~l~~p~nPtG~~-~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G 283 (433)
++++|+++.++||+|.. ++.+++++|.++|++|++++|+||+|.++.+.+.+.+..... ..++++ ||||.++ +|
T Consensus 170 ~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~~~~~~-~~~d~~---t~sK~~~-~G 244 (379)
T TIGR00707 170 ETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYG-IEPDII---TLAKGLG-GG 244 (379)
T ss_pred CeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhhHHhcC-CCCCEE---EEccccc-CC
Confidence 67888886556777764 799999999999999999999999999876654332222221 222333 7899998 99
Q ss_pred cceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCee
Q 045431 284 VRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKV 363 (433)
Q Consensus 284 ~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 363 (433)
+|+||++++++++ +.+.........+.++++|.++.++|+.... ....++++++++.+.+.|++.+...
T Consensus 245 ~riG~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~ 313 (379)
T TIGR00707 245 VPIGATLAKEEVA--------EAFTPGDHGSTFGGNPLACAAALAVLEVIEK---ERLLENVKEKGDYFKERLEELGKNY 313 (379)
T ss_pred cccEEEEEcHHHH--------hhhcCCCCCCCCCCCHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999998775 4444332334455788999999888762211 3455677777777777776642211
Q ss_pred ---ecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 364 ---YGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 364 ---~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
..+..|+++|+.++. +..++...+ .+.||.+.|+. .+++|+++ ..+++++++++++|++++
T Consensus 314 ~~~~~~~~g~~~~~~~~~-~~~~~~~~l-~~~Gv~v~~~~------~~~lRi~~~~~~t~~~i~~~~~~l~~~~ 379 (379)
T TIGR00707 314 PNKEVRGKGLMLGIELEA-PCKDIVKKA-LEKGLLVNCAG------PKVLRFLPPLIITKEEIDEAVSALEEAI 379 (379)
T ss_pred CCCccccCceEEEEEecC-cHHHHHHHH-HHCCcEEeeCC------CCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence 112368899999864 345566665 45699999852 47899995 468999999999998864
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=232.60 Aligned_cols=337 Identities=14% Similarity=0.132 Sum_probs=225.5
Q ss_pred CCceEEecCCCC-CCCChHHHHHHHHHHHhhcccCCC--CCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHH
Q 045431 62 DAEVISLGIGDT-TEPIPEVITSALAKRSYALSTQEG--YSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCD 138 (433)
Q Consensus 62 ~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~~~~~~--~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~a 138 (433)
+.++++|+++++ .+..+|.+.+++.+++.++....+ ...|++.....+|++.+|+++ + .++.+++++|+.+.
T Consensus 45 ~~~~~~~~s~dylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~----g-~~~~~~~~sG~~an 119 (407)
T PRK09064 45 EREVTVWCSNDYLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLH----G-KEAALVFTSGYVSN 119 (407)
T ss_pred CceEEEEECCCCcCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHh----C-CCcEEEECcHHHHH
Confidence 357899998876 577889999999999877542111 112334455677888888876 5 35678888887554
Q ss_pred HHHHHHhc--CCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCC--CCccEEEEcCC
Q 045431 139 ISRLQIVF--GSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV--ARTDIIFFCSP 214 (433)
Q Consensus 139 l~~l~~l~--~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~p 214 (433)
..++..++ .+++.|+.....|......+...+. ++..++..+...+..-++.. +++++|++++|
T Consensus 120 ~~ai~~l~~~~~~~~i~~~~~~h~s~~~~~~~~~~------------~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~v 187 (407)
T PRK09064 120 DATLSTLAKLIPDCVIFSDELNHASMIEGIRRSRC------------EKHIFRHNDVAHLEELLAAADPDRPKLIAFESV 187 (407)
T ss_pred HHHHHHHhCCCCCCEEEEeCcchHHHHHHHHHcCC------------cEEEECCCCHHHHHHHHHhccCCCCeEEEEeCC
Confidence 54555444 3788777777777776666665552 44444432111111111211 46789999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCC-CcceEEEecccccccccccceeeeeccc
Q 045431 215 NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGA-KEVAIETSSFSKYAGFTGVRLGWTVIPK 293 (433)
Q Consensus 215 ~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~-~~~vi~i~S~sK~~~~~G~r~G~l~~~~ 293 (433)
+||+|.+.+ +++|.++|++||+++|+||+|+...+......+.+..+. .+..++++||||.+|++| ||+++++
T Consensus 188 ~s~~G~~~~---l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~G---G~~~~~~ 261 (407)
T PRK09064 188 YSMDGDIAP---IAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFGVMG---GYIAGSA 261 (407)
T ss_pred CCCCccccC---HHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhhhccC---ceEecCH
Confidence 999999888 888889999999999999999843332222222222221 233688999999999878 9999988
Q ss_pred cccccCCcchhHHHHHHHhh--ccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccE
Q 045431 294 ELLFSDGFPVAKDFNRIVCT--CFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPY 371 (433)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~ 371 (433)
+++ +.+...... ...+.++..+.++.+.++.... ....+++++++++++.+.|++.|+++.++ .+++
T Consensus 262 ~~~--------~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~i 330 (407)
T PRK09064 262 ALV--------DAVRSYAPGFIFTTSLPPAIAAAALASIRHLKE--SNEERERHQERAAKLKAALDAAGIPVMPN-ESHI 330 (407)
T ss_pred HHH--------HHHHHhCccccccCcCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHcCCCCCCC-CCCE
Confidence 774 444432221 1234566667766666652211 13446788899999999999988887654 5667
Q ss_pred EEEECCC-CChHHHHHHHHHcCCeEecCCCCCC-CCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 372 VWVQFPG-RSSWDVFSEILEKTHVVTTPGSGFG-PGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 372 ~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~-~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
+++.++. ....++...+++++||.+.+..... +.+.+++||++ +.+++|++++++.|++++
T Consensus 331 v~i~~~~~~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l~~~~ 395 (407)
T PRK09064 331 VPVMVGDPEKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEALVEVW 395 (407)
T ss_pred EEEEeCCHHHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 7777753 2345677777666799998864332 22446899995 568999999999998875
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-28 Score=234.21 Aligned_cols=343 Identities=10% Similarity=0.081 Sum_probs=225.0
Q ss_pred hcCCCCceEEecCCCC--CCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCC-CCCcEEEcC
Q 045431 58 LKYPDAEVISLGIGDT--TEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGI-EEGDIFVSD 133 (433)
Q Consensus 58 ~~~~~~~~i~l~~g~~--~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~-~~~~i~~~~ 133 (433)
...+++..|||..|.. .+. .++.+.+++.+++.+... ....|.+.. ..+|.+.+++++ +. ++++|++++
T Consensus 38 ~d~dg~~~lD~~s~~~~~~lG~~~p~v~~ai~~~~~~~~~--~~~~~~~~~-~~~la~~l~~~~----~~~~~~~v~~~~ 110 (398)
T PRK03244 38 WDVDGKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATLGH--VSNLFATEP-QIALAERLVELL----GAPEGGRVFFCN 110 (398)
T ss_pred EECCCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhccC--ccCccCCHH-HHHHHHHHHHhC----CCCCCCEEEEeC
Confidence 3345778999988643 334 378999999999986432 223464322 245555555543 43 357999999
Q ss_pred ChHHHHHH-HHHhcCCC-CEEEEeCCCChhhhhhHHHhCCc-ccccccccccceEEEeecCccCCcccCCCCCCCccEEE
Q 045431 134 GAKCDISR-LQIVFGSN-VTMAVQDPSYPAYVDSSVIMGQT-GEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIF 210 (433)
Q Consensus 134 G~~~al~~-l~~l~~~g-d~Vl~~~p~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 210 (433)
|+++++.. +.....+| +.|+..+++|+++.......+.. .....+.....++..+|..+...+...+ .+++++|+
T Consensus 111 sgsea~~~al~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~--~~~~~avi 188 (398)
T PRK03244 111 SGAEANEAAFKLARLTGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPYGDVDALAAAV--DDDTAAVF 188 (398)
T ss_pred chHHHHHHHHHHHHHHCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCCCCHHHHHHhh--cCCeEEEE
Confidence 99999987 44334455 56777888998875444433211 1100010000133444432111111111 25788888
Q ss_pred EcCCCCccccCCCHHH-HHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeee
Q 045431 211 FCSPNNPTGAAATREQ-LTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWT 289 (433)
Q Consensus 211 l~~p~nPtG~~~~~~~-~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l 289 (433)
++.++||||.+++.++ +++|.++|++||+++|+||+|.++...+.+..+....-.+| +.+|||.++ +|+|+||+
T Consensus 189 iep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pD----i~t~sK~l~-~G~~ig~~ 263 (398)
T PRK03244 189 LEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTPD----VVTLAKGLG-GGLPIGAC 263 (398)
T ss_pred EecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhhhhhCCCCC----EEEEchhhh-CCcccEEE
Confidence 8888999999997655 99999999999999999999987765543221111111233 348899998 99999999
Q ss_pred eccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeee--cCC
Q 045431 290 VIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVY--GGK 367 (433)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~--~~~ 367 (433)
+++++++ +.+.......+.+.+++.+.++.+.|+.... ++..++++++.+.+.+.|++++.... ...
T Consensus 264 ~~~~~~~--------~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~v~g 332 (398)
T PRK03244 264 LAFGPAA--------DLLTPGLHGSTFGGNPVACAAALAVLDTIAS---EGLLENAERLGEQLRAGIEALGHPLVDHVRG 332 (398)
T ss_pred EEcHHHH--------hhccCCCCcCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHhcCCCceeeEee
Confidence 9998874 4444333444567889999999998762211 34566777778888899988654221 123
Q ss_pred CccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 368 NAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 368 ~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
.|+++|+.++......+..++++ +||.+.+. +.+.+|++. ..+++++++++++|++++
T Consensus 333 ~g~~~~i~~~~~~~~~~~~~l~~-~Gv~~~~~------~~~~iR~~p~~~~t~~~i~~~~~~l~~~l 392 (398)
T PRK03244 333 RGLLLGIVLTAPVAKAVEAAARE-AGFLVNAV------APDVIRLAPPLIITDAQVDAFVAALPAIL 392 (398)
T ss_pred ccEEEEEEEeccHHHHHHHHHHH-CCeEEeec------CCCEEEEECCCcCCHHHHHHHHHHHHHHH
Confidence 78899999974344556666655 59999873 236899994 468999999999999876
|
|
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-27 Score=229.76 Aligned_cols=336 Identities=14% Similarity=0.131 Sum_probs=224.6
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCC----CCCCCHHHHHHHHHHHhccCCC-CCCcEEEcCChHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYG----AEQGEKPLRAAIASTFYKDLGI-EEGDIFVSDGAKCD 138 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~----~~~g~~~lr~~la~~l~~~~~~-~~~~i~~~~G~~~a 138 (433)
++|.|..+... +.|+.+.+++.+.+...........|. ...-..++|+++|+++ ++ ++++|++|+|++++
T Consensus 23 ~~iYld~a~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~~~~~v~~t~g~t~~ 97 (406)
T PRK09295 23 PLAYLDSAASA-QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFI----NARSAEELVFVRGTTEG 97 (406)
T ss_pred ceEEEeCcccc-cCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHc----CcCCCCeEEEeCCHHHH
Confidence 47888887754 578889999988886432101011110 0123568888888887 76 67899999999999
Q ss_pred HHHH-HH----hcCCCCEEEEeCCCChhhh----hhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCc
Q 045431 139 ISRL-QI----VFGSNVTMAVQDPSYPAYV----DSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VART 206 (433)
Q Consensus 139 l~~l-~~----l~~~gd~Vl~~~p~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~ 206 (433)
++++ .. .+++||+|++.+++|++.. ...+..| .+++.++.+.++....+ +++ .+++
T Consensus 98 l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g------------~~v~~v~~~~~~~~d~~~l~~~i~~~t 165 (406)
T PRK09295 98 INLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVG------------AELRVIPLNPDGTLQLETLPALFDERT 165 (406)
T ss_pred HHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcC------------cEEEEEecCCCCCCCHHHHHHhcCCCc
Confidence 9974 43 4689999999999987643 2333445 47778887654332222 222 3578
Q ss_pred cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccce
Q 045431 207 DIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRL 286 (433)
Q Consensus 207 ~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~ 286 (433)
+++++++|+||||.+++ +++|.++|+++|+++++|++|+.... +.++... +..+++.|++|.+|.+| +
T Consensus 166 ~lv~l~~~~n~tG~~~~---~~~i~~~~~~~~~~vivD~a~~~g~~---~~~~~~~----~~D~~~~s~~K~~gp~G--~ 233 (406)
T PRK09295 166 RLLAITHVSNVLGTENP---LAEMIALAHQHGAKVLVDGAQAVMHH---PVDVQAL----DCDFYVFSGHKLYGPTG--I 233 (406)
T ss_pred EEEEEecchhcccccCC---HHHHHHHHHHcCCEEEEEcccccCcc---ccCchhc----CCCEEEeehhhccCCCC--c
Confidence 99999999999999998 78889999999999999999974321 3333322 23488999999888556 8
Q ss_pred eeeeccccccccCCcc-----------------hhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHH
Q 045431 287 GWTVIPKELLFSDGFP-----------------VAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENT 349 (433)
Q Consensus 287 G~l~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 349 (433)
||++++++++....+. +...-.++. ..+.+.....++.++++......+++..++.++.+
T Consensus 234 G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e---~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~ 310 (406)
T PRK09295 234 GILYVKEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFE---AGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLM 310 (406)
T ss_pred EEEEEchHhHhhCCCcccCCceeeeeecCCccccCCchhhcC---CCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 9999988774211000 000001111 12344444444444443211123467778888889
Q ss_pred HHHHHHHhhc-CCeeecCC-CccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCC------CCCCeEEEee--ccChh
Q 045431 350 DIIVETFNSL-GFKVYGGK-NAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGP------GGEGFIRVSA--FGHRG 419 (433)
Q Consensus 350 ~~l~~~l~~~-g~~~~~~~-~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~------~~~~~iRi~~--~~~~~ 419 (433)
+++.+.|++. |+.+..+. .+..+.+.+++....++... +.++||.++.|..|.. ..++.+|+|+ +++++
T Consensus 311 ~~l~~~l~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~-L~~~gI~v~~g~~c~~~~~~~~~~~~~iRiS~~~ynt~~ 389 (406)
T PRK09295 311 HYALSQLESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSF-LDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHE 389 (406)
T ss_pred HHHHHHHhcCCCEEEeCCCCCceEEEEEECCcCHHHHHHH-HHhCCeEEeccccchHHHHHHHCCCCEEEEEccCCCCHH
Confidence 9999999887 77776542 23455666776566666555 4667999999886542 1246899995 67999
Q ss_pred HHHHHHHHHHHhh
Q 045431 420 NVLEACKRFKHLY 432 (433)
Q Consensus 420 ~l~~~l~~l~~~l 432 (433)
|++.+++.|+++.
T Consensus 390 did~l~~~l~~i~ 402 (406)
T PRK09295 390 EVDRLVAGLQRIH 402 (406)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998763
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-27 Score=228.72 Aligned_cols=336 Identities=16% Similarity=0.153 Sum_probs=221.7
Q ss_pred CceEEecCCCC-CCCChHHHHHHHHHHHhhcccCCCCC--CCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHH
Q 045431 63 AEVISLGIGDT-TEPIPEVITSALAKRSYALSTQEGYS--GYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDI 139 (433)
Q Consensus 63 ~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~~~~~~~~--~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al 139 (433)
.++++|+.+++ .+..+|.+.+++.+++.+++.....+ .|+......+|++.+|+++ +. ++.+++++|+.+..
T Consensus 45 ~~~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~----g~-~~~l~~~sG~~an~ 119 (402)
T TIGR01821 45 KDVTVWCSNDYLGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLH----GK-ESALVFTSGYVAND 119 (402)
T ss_pred eeEEEeEccCcCCCCCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHh----CC-CeEEEECchHHHHH
Confidence 56899998886 57789999999999998764322111 2233344677888888886 53 45667777644433
Q ss_pred HHHHHhcC--CCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCC--CCccEEEEcCCC
Q 045431 140 SRLQIVFG--SNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV--ARTDIIFFCSPN 215 (433)
Q Consensus 140 ~~l~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~p~ 215 (433)
.++..+.. +++.|+.+...|......+...|. ++..++..+...+..-+... .++++|++++|+
T Consensus 120 ~ai~~l~~~~~~~~v~~~~~~h~s~~~~~~~~g~------------~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~e~~~ 187 (402)
T TIGR01821 120 ATLATLAKIIPGCVIFSDELNHASMIEGIRHSGA------------EKFIFRHNDVAHLEKLLQSVDPNRPKIIAFESVY 187 (402)
T ss_pred HHHHHhhCCCCCCEEEEcchHhHHHHHHHHHcCC------------eEEEECCCCHHHHHHHHHhccCCCCeEEEEcCCC
Confidence 34555543 777777776677666666665552 44444432111111111111 357888999999
Q ss_pred CccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCC-CcceEEEecccccccccccceeeeecccc
Q 045431 216 NPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGA-KEVAIETSSFSKYAGFTGVRLGWTVIPKE 294 (433)
Q Consensus 216 nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~-~~~vi~i~S~sK~~~~~G~r~G~l~~~~~ 294 (433)
||||.+.+ +++|.++|++||+++|+||+|+...+......+....+. .+..++++||||.+|++| ||++++++
T Consensus 188 ~~~G~~~~---l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~G---G~i~~~~~ 261 (402)
T TIGR01821 188 SMDGDIAP---IEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGVVG---GYIAASRK 261 (402)
T ss_pred CCCCCccC---HHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhccCC---ceeecCHH
Confidence 99999988 788889999999999999999843333222222222111 223588899999999878 99998887
Q ss_pred ccccCCcchhHHHHHHHhh--ccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEE
Q 045431 295 LLFSDGFPVAKDFNRIVCT--CFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYV 372 (433)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~ 372 (433)
++ +.+...... .+.+.++..+.++.+.++..... ...++.++++++++.+.|+++|+++.++ .+.++
T Consensus 262 ~~--------~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~--~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~i~ 330 (402)
T TIGR01821 262 LI--------DAIRSYAPGFIFTTSLPPAIAAGATASIRHLKES--QDLRRAHQENVKRLKNLLEALGIPVIPN-PSHIV 330 (402)
T ss_pred HH--------HHHHHhCcCceecCcCCHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHHHHHHcCCCcCCC-CCCEE
Confidence 74 444432211 12345677777777777532211 4455667788999999999988887665 56666
Q ss_pred EEECCCC-ChHHHHHHHHHcCCeEecCCCCCC-CCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 373 WVQFPGR-SSWDVFSEILEKTHVVTTPGSGFG-PGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 373 ~~~~~~~-~~~~~~~~l~~~~gi~v~~g~~f~-~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
++.++.. ...++...+++++||.+.+..... +.+..++||++ +.+++|++++++.|++++
T Consensus 331 ~i~~~~~~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~edi~~~~~~l~~~~ 394 (402)
T TIGR01821 331 PVIIGDAALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLVEALLLVW 394 (402)
T ss_pred EEEeCCHHHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 6766531 345666776666799998854322 23457899996 569999999999998875
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-27 Score=231.03 Aligned_cols=338 Identities=15% Similarity=0.141 Sum_probs=227.7
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCC-CCCCC---CCCCHHHHHHHHHHHhccCCCC-CCcEEEcCChHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGY-SGYGA---EQGEKPLRAAIASTFYKDLGIE-EGDIFVSDGAKC 137 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~Y~~---~~g~~~lr~~la~~l~~~~~~~-~~~i~~~~G~~~ 137 (433)
.+.+.|..+... +.|+.+.+++.+.+......... ..|.. .....++|+.+++++ +++ +++|++|+|+++
T Consensus 31 ~~~iyLd~a~~~-~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~~~~~v~~t~g~t~ 105 (424)
T PLN02855 31 SKLVYLDNAATS-QKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFI----NASTSREIVFTRNATE 105 (424)
T ss_pred CCeEEeeCcccc-CCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHc----CCCCCCEEEEeCCHHH
Confidence 357899888775 68888999998887654211111 11111 123468899999987 774 589999999999
Q ss_pred HHHHH-HH----hcCCCCEEEEeCCCChhhhhhH----HHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCC
Q 045431 138 DISRL-QI----VFGSNVTMAVQDPSYPAYVDSS----VIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VAR 205 (433)
Q Consensus 138 al~~l-~~----l~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~ 205 (433)
++.++ .. .+++||+|++.++.|++....+ +..| .+++.++.+.++.+..+ +++ .++
T Consensus 106 al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g------------~~v~~v~~~~~~~~~~~~l~~~i~~~ 173 (424)
T PLN02855 106 AINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTG------------AVLKFVGLTPDEVLDVEQLKELLSEK 173 (424)
T ss_pred HHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcC------------CEEEEEecCCCCCcCHHHHHHHhccC
Confidence 99974 33 3689999999999888644333 3445 37778887654332222 222 358
Q ss_pred ccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccc
Q 045431 206 TDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVR 285 (433)
Q Consensus 206 ~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r 285 (433)
+++|++++|+||||.+++ +++|.++|+++|+++|+|++|+.. ..+..+..+ +..+++.|++|.+|.+|
T Consensus 174 t~lv~i~~~~n~tG~~~~---~~~I~~l~~~~g~~vivD~a~~~g---~~~~~~~~~----~~d~~~~s~~K~~gp~G-- 241 (424)
T PLN02855 174 TKLVATHHVSNVLGSILP---VEDIVHWAHAVGAKVLVDACQSVP---HMPVDVQTL----GADFLVASSHKMCGPTG-- 241 (424)
T ss_pred ceEEEEeCccccccccCC---HHHHHHHHHHcCCEEEEEhhhhcC---CcCCCchhc----CCCEEEeecccccCCCc--
Confidence 899999999999999999 678889999999999999999631 112333322 22478999999877555
Q ss_pred eeeeeccccccccCCcch----------------hHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHH
Q 045431 286 LGWTVIPKELLFSDGFPV----------------AKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENT 349 (433)
Q Consensus 286 ~G~l~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 349 (433)
+||++++++++....+.. ...-.++. ..+.+.....++.++++......+++.+++..+.+
T Consensus 242 ~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e---~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~ 318 (424)
T PLN02855 242 IGFLWGKSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFE---AGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELG 318 (424)
T ss_pred cEEEEEchhhhhcCCCEecCCCceeeeecCccccCCChhhcc---CCChHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 899999988753211100 00001111 11233333333333333111124578888889999
Q ss_pred HHHHHHHhhc-CCeeecCC------CccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCC------CCCCeEEEee--
Q 045431 350 DIIVETFNSL-GFKVYGGK------NAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGP------GGEGFIRVSA-- 414 (433)
Q Consensus 350 ~~l~~~l~~~-g~~~~~~~------~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~------~~~~~iRi~~-- 414 (433)
+.+.+.|+++ |+++..+. .+.++.+.+++....++...|.+++||.++.|..+.. .-++++|+|+
T Consensus 319 ~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~~~~~~~~v~~~L~~~~gI~v~~g~~c~~~~~~~~g~~~~iRiS~~~ 398 (424)
T PLN02855 319 TYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNVEGIHPTDLSTFLDQQHGVAIRSGHHCAQPLHRYLGVNASARASLYF 398 (424)
T ss_pred HHHHHHHhcCCCEEEeCCCcccccCcccEEEEEECCcCHHHHHHHhcccCCEEEechhhhhHHHHHHhCCCCeEEEEecc
Confidence 9999999887 88877532 2457778887666677777766556999998876532 1246899995
Q ss_pred ccChhHHHHHHHHHHHhh
Q 045431 415 FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 415 ~~~~~~l~~~l~~l~~~l 432 (433)
+++++|++.+++.|++++
T Consensus 399 ynt~~di~~l~~~l~~~~ 416 (424)
T PLN02855 399 YNTKEEVDAFIHALKDTI 416 (424)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 789999999999998875
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.3e-27 Score=227.46 Aligned_cols=335 Identities=16% Similarity=0.150 Sum_probs=218.0
Q ss_pred CCCceEEecCCCC-CCCChHHHHHHHHHHHhhcccCCCCC-CC-CCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHH
Q 045431 61 PDAEVISLGIGDT-TEPIPEVITSALAKRSYALSTQEGYS-GY-GAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 61 ~~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~~~~~~~~-~Y-~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~ 137 (433)
++..+++|+.+++ ++...|.+.+++.+++.+++.....+ .+ .......+|++.+|+++ +. +.+++++|+++
T Consensus 52 ~g~~~~~~~~~~YL~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~----g~--~~~~~~~sG~~ 125 (407)
T PRK07179 52 PGPDAIILQSNDYLNLSGHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFT----GF--ESCLLCQSGWA 125 (407)
T ss_pred CCCcEEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHh----CC--CcEEEECCHHH
Confidence 4567899988876 67788999999999998764322111 12 11235678888888886 54 45677888888
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCC
Q 045431 138 DISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNN 216 (433)
Q Consensus 138 al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~n 216 (433)
++.+ +..++.+||.|+++.+.|......+...|. +++.++..+.+.+...+. ..++++|++++|+|
T Consensus 126 An~~~l~~l~~~g~~v~~~~~~h~s~~~~~~~~g~------------~~~~~~~~d~~~l~~~l~-~~~~~lV~v~~v~n 192 (407)
T PRK07179 126 ANVGLLQTIADPNTPVYIDFFAHMSLWEGVRAAGA------------QAHPFRHNDVDHLRRQIE-RHGPGIIVVDSVYS 192 (407)
T ss_pred HHHHHHHHhCCCCCEEEEECCcCHHHHHHHHHCCC------------eEEEecCCCHHHHHHHHH-hcCCeEEEECCCCC
Confidence 8876 677889999999999999888777766662 444444321111111111 12467778889999
Q ss_pred ccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCccc-ccCCCCcceEEEecccccccccccceeeeeccccc
Q 045431 217 PTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIF-EIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKEL 295 (433)
Q Consensus 217 PtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~-~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~ 295 (433)
|||.+++ +++|.++|++||+++|+||+|+....+....++. .++..+...+++.|+||.+| + |+||+++++++
T Consensus 193 ~tG~i~p---l~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~g-~--~~G~l~~~~~~ 266 (407)
T PRK07179 193 TTGTIAP---LADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAFA-G--RAGIITCPREL 266 (407)
T ss_pred CCCcccc---HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHhhh-c--cCeEEEeCHHH
Confidence 9999999 6788999999999999999998533322222222 22211122488999999986 3 68999998877
Q ss_pred cccCCcchhHHHHHHHhh-ccCCC-cHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEE
Q 045431 296 LFSDGFPVAKDFNRIVCT-CFNGA-SNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVW 373 (433)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~-~~~~~-~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~ 373 (433)
+ +.+...... ...++ ++....++.++++.. ...+..+++++++++++.+.|+++|+.+.. .+.+++
T Consensus 267 ~--------~~~~~~~~~~~~~~t~~~~~~aa~~aal~~~--~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~--~~~i~~ 334 (407)
T PRK07179 267 A--------EYVPFVSYPAIFSSTLLPHEIAGLEATLEVI--ESADDRRARLHANARFLREGLSELGYNIRS--ESQIIA 334 (407)
T ss_pred H--------HHHHHhCcCeeeCCCCCHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHcCCCCCC--CCCEEE
Confidence 4 333322111 11122 222222233333321 112557788999999999999988887662 467888
Q ss_pred EECCCCChHHHHHHHHHcCCeEecCCC-CCCCCCCCeEEEeec--cChhHHHHHHHHHHHhh
Q 045431 374 VQFPGRSSWDVFSEILEKTHVVTTPGS-GFGPGGEGFIRVSAF--GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 374 ~~~~~~~~~~~~~~l~~~~gi~v~~g~-~f~~~~~~~iRi~~~--~~~~~l~~~l~~l~~~l 432 (433)
+.++.....+.+...+.++||.+..-. ...+.+.+++||++. .+++++++++++|++++
T Consensus 335 l~~~~~~~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~~ 396 (407)
T PRK07179 335 LETGSERNTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSLNADLTASDLDRVLEVCREAR 396 (407)
T ss_pred EEeCCHHHHHHHHHHHHHCCceEeeecCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 887532233444444555699742100 001223578999974 58999999999998875
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-27 Score=224.03 Aligned_cols=320 Identities=18% Similarity=0.227 Sum_probs=205.7
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQ 143 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l~ 143 (433)
.+++|+.+.++. +++.+.+++.+... . .....| .....+|++++++++ +.+. .+++++|+.+.+.++.
T Consensus 6 ~~~~~~~~~~~~-~~~~~~~a~~~~~~--~--~~~~~~--~~~~~~l~~~la~~~----~~~~-~~~~~~Gs~a~~~~l~ 73 (353)
T PLN02721 6 RVVDLRSDTVTK-PTDAMRAAMANAEV--D--DDVLGY--DPTALRLEEEMAKIF----GKEA-ALFVPSGTMGNLISVL 73 (353)
T ss_pred hhhhhhcccccC-CCHHHHHHHHhccC--C--CcccCC--CHHHHHHHHHHHHHh----CCce-eEEecCccHHHHHHHH
Confidence 368999999885 56777777765311 1 222234 334799999999998 5442 4556666655554456
Q ss_pred HhcC-CCCEEEEeCCCChhhhh---hHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--C-------CCccEE
Q 045431 144 IVFG-SNVTMAVQDPSYPAYVD---SSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--V-------ARTDII 209 (433)
Q Consensus 144 ~l~~-~gd~Vl~~~p~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~-------~~~~~i 209 (433)
.++. +||+|++++|+|..... .....| .+++.++.+++...+.+ +++ . +++++|
T Consensus 74 ~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v 141 (353)
T PLN02721 74 VHCDVRGSEVILGDNSHIHLYENGGISTLGG------------VHPRTVKNNEDGTMDLDAIEAAIRPKGDDHFPTTRLI 141 (353)
T ss_pred HHccCCCCeEEEcCccceehhcccchhhhcC------------ceeEecCCCcCCCcCHHHHHHHHHhccCCCCCcceEE
Confidence 6676 99999999999865444 344455 36777776543322222 221 1 478899
Q ss_pred EEcC-CCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceee
Q 045431 210 FFCS-PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGW 288 (433)
Q Consensus 210 ~l~~-p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~ 288 (433)
++++ |+||||.+++.+++++|.++|++||++||+|++|..........+...+....+ .++.|+||+++. ++|+
T Consensus 142 ~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~d--~~~~s~sK~l~~---~~G~ 216 (353)
T PLN02721 142 CLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRLVKAAD--SVSVCLSKGLGA---PVGS 216 (353)
T ss_pred EEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHHhhhCC--EEEEecccccCC---ceee
Confidence 9986 588999999999999999999999999999999863221100111111111122 445589999863 3565
Q ss_pred -eeccccccccCCcchhHHHHHHHhhccCCCcHHHHHH--HHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCee-
Q 045431 289 -TVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAG--GLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKV- 363 (433)
Q Consensus 289 -l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~- 363 (433)
++++++++ +.+...........+...+.+ +...++ .+.+++ ++..++++.+.+.|+++ ++.+
T Consensus 217 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~-~~~~~~~~~l~~~L~~~~~~~~~ 283 (353)
T PLN02721 217 VIVGSKSFI--------RKAKRLRKTLGGGMRQVGVLAAAALVALQ----ENVPKL-EDDHKKAKLLAEGLNQIKGLRVN 283 (353)
T ss_pred EEecCHHHH--------HhHHHHHHhcCCCeehhHHHHHHHHHHHH----HHHHHH-HHHHHHHHHHHHHHHhCCCcEEe
Confidence 66777764 444444332222222222222 222232 223333 33456778899999987 7754
Q ss_pred ecCCCccEEEEECCC---CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 364 YGGKNAPYVWVQFPG---RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 364 ~~~~~g~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
..+..++++|++++. ....++...|. ++||.+.|+. .+++|+++ +.+++++++++++|++++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~~gi~v~~~~------~~~lR~~~~~~~~~~~i~~~~~~l~~~~ 350 (353)
T PLN02721 284 VAAVETNIVYFDITDGSRITAEKLCKSLE-EHGVLLMPGN------SSRIRVVTHHQISDSDVQYTLSCFQQAA 350 (353)
T ss_pred cCCccceEEEEEccCCccccHHHHHHHHH-hCCcEEecCC------CceEEEEecCcCCHHHHHHHHHHHHHHh
Confidence 334456789999874 35566666665 6699999873 46899996 458999999999999876
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-27 Score=228.52 Aligned_cols=341 Identities=15% Similarity=0.170 Sum_probs=225.4
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCC----CCCCCHHHHHHHHHHHhccCCCC-CCcEEEcCChH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYG----AEQGEKPLRAAIASTFYKDLGIE-EGDIFVSDGAK 136 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~----~~~g~~~lr~~la~~l~~~~~~~-~~~i~~~~G~~ 136 (433)
+.+++.|..+... ++|+.+.+++.+.+...........+. ......++|+.+++++ +++ +++|++|+|++
T Consensus 16 ~~~~~yld~~~~~-~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~----~~~~~~~v~~~~g~t 90 (403)
T TIGR01979 16 GKPLVYLDSAATS-QKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFI----NAASDEEIVFTRGTT 90 (403)
T ss_pred CCceEEEeCcccc-CCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHh----CcCCCCeEEEeCCHH
Confidence 3467889888876 577888899888775421101110110 1134668899999987 776 78999999999
Q ss_pred HHHHHH-HHh----cCCCCEEEEeCCCChhhhh----hHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CC
Q 045431 137 CDISRL-QIV----FGSNVTMAVQDPSYPAYVD----SSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VA 204 (433)
Q Consensus 137 ~al~~l-~~l----~~~gd~Vl~~~p~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~ 204 (433)
+++.++ ..+ +++||+|+++++.|++... .....| .+++.++.+.++.+..+ +++ .+
T Consensus 91 ~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~~l~~~i~~ 158 (403)
T TIGR01979 91 ESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTG------------ATLKFIPLDDDGTLDLDDLEKLLTE 158 (403)
T ss_pred HHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcC------------cEEEEEecCCCCCCCHHHHHHHhcc
Confidence 999874 433 5899999999999887543 333445 47778887643322222 221 36
Q ss_pred CccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccccc
Q 045431 205 RTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGV 284 (433)
Q Consensus 205 ~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~ 284 (433)
+++++++++|+||||..++ +++|.++|++||+++|+|++|+.... +..+... +..+++.|++|.+|.+|
T Consensus 159 ~~~lv~~~~~~~~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~g~~---~~~~~~~----~~d~~~~s~~K~~gp~G- 227 (403)
T TIGR01979 159 KTKLVAITHVSNVLGTVNP---VEEIAKLAHQVGAKVLVDGAQAVPHM---PVDVQAL----DCDFYVFSGHKMYGPTG- 227 (403)
T ss_pred CCeEEEEEcccccccccCC---HHHHHHHHHHcCCEEEEEchhhcCcc---ccCcccc----CCCEEEEecccccCCCC-
Confidence 7899999999999999999 77888999999999999999974211 2333222 23488999999988666
Q ss_pred ceeeeeccccccccCCcchh-----H-------HHHH-HHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHH
Q 045431 285 RLGWTVIPKELLFSDGFPVA-----K-------DFNR-IVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDI 351 (433)
Q Consensus 285 r~G~l~~~~~~~~~~~~~~~-----~-------~~~~-~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 351 (433)
+|+++++++++..-.+... + .+.. .......+++.....++.++++......+++.+++..+.++.
T Consensus 228 -~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~ 306 (403)
T TIGR01979 228 -IGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAY 306 (403)
T ss_pred -ceEEEEchHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 8999998876421100000 0 0000 000011123444444444444321112346778888899999
Q ss_pred HHHHHhhc-CCeeecCC----CccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCC------CCCCCeEEEee--ccCh
Q 045431 352 IVETFNSL-GFKVYGGK----NAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFG------PGGEGFIRVSA--FGHR 418 (433)
Q Consensus 352 l~~~l~~~-g~~~~~~~----~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~------~~~~~~iRi~~--~~~~ 418 (433)
+.+.|+++ |+++..|. .+.++.+.+++.+..++.. .++++||.+.+|..+. ...++++|+|+ ++++
T Consensus 307 l~~~l~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~L~~~gI~v~~g~~~~~~~~~~~~~~~~iRiS~~~~~t~ 385 (403)
T TIGR01979 307 ALERLGEIPGLRIYGPRDAEDRGGIISFNVEGVHPHDVGT-ILDEEGIAVRSGHHCAQPLMRRFGVPATCRASFYIYNTE 385 (403)
T ss_pred HHHHHhcCCCEEEeCCCCccccCceEEEEeCCcCHHHHHH-HHhhCCEEEcchhhhhHHHHHHhCCCCEEEEEeccCCCH
Confidence 99999887 78887653 2556667777655556655 4556799999886432 11257899996 5689
Q ss_pred hHHHHHHHHHHHhh
Q 045431 419 GNVLEACKRFKHLY 432 (433)
Q Consensus 419 ~~l~~~l~~l~~~l 432 (433)
+|++++++.|++++
T Consensus 386 ~di~~l~~~l~~~~ 399 (403)
T TIGR01979 386 EDIDALVEALKKVR 399 (403)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998765
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-27 Score=223.48 Aligned_cols=309 Identities=15% Similarity=0.095 Sum_probs=208.1
Q ss_pred CCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEE
Q 045431 74 TEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTM 152 (433)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~V 152 (433)
++++|+.+++++.+.... ...|++.....++++.+++++ + ++++++++|+++++.+ +..++++||.|
T Consensus 7 ~~~~~~~v~~a~~~~~~~------~~~~~~~~~~~~l~~~~a~~~----g--~~~~~~~~~gt~a~~~~~~~l~~~gd~v 74 (338)
T cd06502 7 VTGPTPEMLEAMAAANVG------DDVYGEDPTTAKLEARAAELF----G--KEAALFVPSGTAANQLALAAHTQPGGSV 74 (338)
T ss_pred CCCCCHHHHHHHHhcccC------CcccCCCHHHHHHHHHHHHHh----C--CCeEEEecCchHHHHHHHHHhcCCCCeE
Confidence 457888999999886531 126766777888999998887 5 4567777777788876 57788999999
Q ss_pred EEeCCCChhhhh---hHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--C-------CCccEEEEcCCCCccc
Q 045431 153 AVQDPSYPAYVD---SSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--V-------ARTDIIFFCSPNNPTG 219 (433)
Q Consensus 153 l~~~p~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~-------~~~~~i~l~~p~nPtG 219 (433)
+++.|+|..+.. .....| .+++.++.+. ...+.+ +++ . +++++|++++|+|| |
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g 140 (338)
T cd06502 75 ICHETAHIYTDEAGAPEFLSG------------VKLLPVPGEN-GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-G 140 (338)
T ss_pred EEecCcceeeecCCcHHHHcC------------ceEEeecCCC-CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-c
Confidence 999999976543 233456 3666776643 222111 111 1 26889999999997 6
Q ss_pred cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccC
Q 045431 220 AAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSD 299 (433)
Q Consensus 220 ~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~ 299 (433)
.+++.+++++|+++|++||+++|+|++|..+.......++.......+ +++.|+||+++++| .++++++++++
T Consensus 141 ~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~~~~~~~~~d--~~~~s~sK~~~~~~--g~~~~~~~~~~--- 213 (338)
T cd06502 141 TVYPLDELKAISALAKENGLPLHLDGARLANAAAALGVALKTYKSGVD--SVSFCLSKGGGAPV--GAVVVGNRDFI--- 213 (338)
T ss_pred cccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCCCHHHHHhcCC--EEEEeccccCCCcc--ceEEECCHHHH---
Confidence 677999999999999999999999999864322111112322221122 56889999999877 23455677664
Q ss_pred CcchhHHHHHHHhh--ccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECC
Q 045431 300 GFPVAKDFNRIVCT--CFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFP 377 (433)
Q Consensus 300 ~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~ 377 (433)
+.+...... .....+.+.+.++...|+...+ .+..+++.++++++.+.|+++|+.+.+ ..++++.+.++
T Consensus 214 -----~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~v~~~ 284 (338)
T cd06502 214 -----ARARRRRKQAGGGMRQSGFLAAAGLAALENDLW---LRRLRHDHEMARRLAEALEELGGLESE-VQTNIVLLDPV 284 (338)
T ss_pred -----HHHHHHHHHhCCChhhHHHHHHHHHHHhcCchH---HHHHHHHHHHHHHHHHHHHhcCCCccc-ccCCeEEEecC
Confidence 455443322 2233566778888888875432 445577778889999999998876544 45667777765
Q ss_pred CCC--hHHHHHHHH--HcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHH
Q 045431 378 GRS--SWDVFSEIL--EKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKH 430 (433)
Q Consensus 378 ~~~--~~~~~~~l~--~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~ 430 (433)
... ...+...+. .++|+.+.+.. .+++|++. ..++++++++++++++
T Consensus 285 ~~~~~~~~l~~~l~~~~~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 285 EANAVFVELSKEAIERRGEGVLFYAWG------EGGVRFVTHWDTTEEDVDELLSALKA 337 (338)
T ss_pred CccHHHHHHHHHHHHhhhCCEEEEecC------CCeEEEEeecCCCHHHHHHHHHHHhc
Confidence 211 112222222 14599987642 27899995 4589999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-26 Score=221.63 Aligned_cols=314 Identities=13% Similarity=0.153 Sum_probs=211.8
Q ss_pred CCChHHHHHHHHHHHhhcccCCCCCCCCCCC--CCHHHHHHHHHHHhccCCCCC-CcEEEcCChHHHHHH-HHHhcCCCC
Q 045431 75 EPIPEVITSALAKRSYALSTQEGYSGYGAEQ--GEKPLRAAIASTFYKDLGIEE-GDIFVSDGAKCDISR-LQIVFGSNV 150 (433)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~--g~~~lr~~la~~l~~~~~~~~-~~i~~~~G~~~al~~-l~~l~~~gd 150 (433)
.+.|+.+++++.+.+.. ..| +.. -..++++.+++++ ++++ +.+++++|+++++.+ +.+++++||
T Consensus 8 ~~~~~~v~~a~~~~~~~-------~~~-~~~~~~~~~~~~~la~~~----g~~~~~~~~~~~~~t~al~~~~~~~~~~g~ 75 (356)
T cd06451 8 SNVPPRVLKAMNRPMLG-------HRS-PEFLALMDEILEGLRYVF----QTENGLTFLLSGSGTGAMEAALSNLLEPGD 75 (356)
T ss_pred cCCCHHHHHHhCCCccC-------CCC-HHHHHHHHHHHHHHHHHh----cCCCCCEEEEecCcHHHHHHHHHHhCCCCC
Confidence 45778888888653321 122 211 1446667777776 7754 457788888999987 578889999
Q ss_pred EEEEeCCCChh--hhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CC-CccEEEEcCCCCccccCCCH
Q 045431 151 TMAVQDPSYPA--YVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VA-RTDIIFFCSPNNPTGAAATR 224 (433)
Q Consensus 151 ~Vl~~~p~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~-~~~~i~l~~p~nPtG~~~~~ 224 (433)
+|++..++|++ +...++..| .+++.++.+++.....+ +++ .+ ++++|++++|+||||.+++
T Consensus 76 ~vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~- 142 (356)
T cd06451 76 KVLVGVNGVFGDRWADMAERYG------------ADVDVVEKPWGEAVSPEEIAEALEQHDIKAVTLTHNETSTGVLNP- 142 (356)
T ss_pred EEEEecCCchhHHHHHHHHHhC------------CCeEEeecCCCCCCCHHHHHHHHhccCCCEEEEeccCCCcccccC-
Confidence 99999988776 345666677 47777877643222211 222 23 7899999999999999988
Q ss_pred HHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcchh
Q 045431 225 EQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVA 304 (433)
Q Consensus 225 ~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~ 304 (433)
+++|.++|+++|+++++|++|+. +..+.++... +..++++|++|+++ .+.++||++.+++++
T Consensus 143 --~~~i~~~a~~~~~~li~D~~~~~---g~~~~~~~~~----~~d~~~~s~~K~l~-~p~g~G~l~~~~~~~-------- 204 (356)
T cd06451 143 --LEGIGALAKKHDALLIVDAVSSL---GGEPFRMDEW----GVDVAYTGSQKALG-APPGLGPIAFSERAL-------- 204 (356)
T ss_pred --HHHHHHHHHhcCCEEEEeeehhc---cCcccccccc----CccEEEecCchhcc-CCCCcceeEECHHHH--------
Confidence 66788888999999999998873 1112333222 12366778999997 445689999988875
Q ss_pred HHHHH----------------HHh---hccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeec
Q 045431 305 KDFNR----------------IVC---TCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYG 365 (433)
Q Consensus 305 ~~~~~----------------~~~---~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~ 365 (433)
+.+.. ... ....+++...+.++.++++......+++..++.+++++++.+.|++.|+.+..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 284 (356)
T cd06451 205 ERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEALGLKLLA 284 (356)
T ss_pred HHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeecc
Confidence 22211 000 11222344444444455442222345778888899999999999988887754
Q ss_pred CC---CccEEEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhhC
Q 045431 366 GK---NAPYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 366 ~~---~g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l~ 433 (433)
+. .+.++|+.++ +.+..++...|.+++||.+.+|..+ ..+++||+++ +++++++++++++|+++++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gI~~~~g~~~--~~~~~iRis~~~~~~~e~v~~~~~~l~~~~~ 356 (356)
T cd06451 285 KPELRSPTVTAVLVPEGVDGDEVVRRLMKRYNIEIAGGLGP--TAGKVFRIGHMGEATREDVLGVLSALEEALK 356 (356)
T ss_pred CcccCCCceEEEECCCCCCHHHHHHHHHHhCCEEEeccccc--ccCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 32 3455678877 4456667767665559999998743 2346999996 4689999999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-26 Score=225.19 Aligned_cols=333 Identities=17% Similarity=0.162 Sum_probs=217.6
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHh-hccc-CCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSY-ALST-QEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR 141 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~-~~~~-~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~ 141 (433)
..++|..++. ..++.+.+++.+.+. ++.. ..+...|....+.+.+++.+++++.+.++++..+|++++| ++++.+
T Consensus 20 ~~~~~~~~~~--~~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~v~~~sg-t~a~~~ 96 (402)
T cd00378 20 ETLELIASEN--FTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAEYANVQPHSG-SQANLA 96 (402)
T ss_pred hCeeeeccCC--cCCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCCceeeecCCc-HHHHHH
Confidence 3688877765 357889998887653 3211 1223346556677888887666665545776666777765 577775
Q ss_pred -HHHhcCCCCEEEEeCCCChhhhhh-----HHHhCCcccccccccccceEEEeecCccC-CcccCCC---C---CCCccE
Q 045431 142 -LQIVFGSNVTMAVQDPSYPAYVDS-----SVIMGQTGEFQKDAEKYGKIEYMRCTAEN-GFFPDLS---T---VARTDI 208 (433)
Q Consensus 142 -l~~l~~~gd~Vl~~~p~~~~~~~~-----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~---~~~~~~ 208 (433)
+..+++|||+|++++|+|+++... ++..| ..+..++.+.+. ++..+++ + ..++++
T Consensus 97 ~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~id~~~l~~~i~~~~~~~ 164 (402)
T cd00378 97 VYFALLEPGDTIMGLDLSHGGHLTHGSFTKVSASG------------KLFESVPYGVDPETGLIDYDALEKMALEFKPKL 164 (402)
T ss_pred HHHHhcCCCCEEEEecCccCccccccccccccccc------------eeEEEecCCcCcccCCcCHHHHHHHHHhCCCCE
Confidence 688899999999999999876543 33344 244445443321 2233322 1 247899
Q ss_pred EEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccc-cccccCCC-CCcccccCCCCcceEEEecccccccccccce
Q 045431 209 IFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAY-ALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRL 286 (433)
Q Consensus 209 i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~-~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~ 286 (433)
+++++|+||+ ..+ +++|+++|++||+++|+|++| .++.+.+. +.++. . .+ ++++|+||++ +|+|.
T Consensus 165 v~~~~~~~~~--~~~---~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~---~-~d--v~~~s~sK~l--~G~~g 231 (402)
T cd00378 165 IVAGASAYPR--PID---FKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP---G-AD--VVTTTTHKTL--RGPRG 231 (402)
T ss_pred EEecCcccCC--CcC---HHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc---C-Cc--EEEeccccCC--CCCCc
Confidence 9988888864 333 889999999999999999996 44444432 22222 1 22 7899999987 78999
Q ss_pred eeeeccc-cccccCCcchhHHHHHHHhhccCCCcHH-HHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeee
Q 045431 287 GWTVIPK-ELLFSDGFPVAKDFNRIVCTCFNGASNI-SQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVY 364 (433)
Q Consensus 287 G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 364 (433)
||+++++ +++ +.+.+.......+.+.+ .+.++..++......+.++.+++++++++.+.+.|+++|+.+.
T Consensus 232 g~i~~~~~~~~--------~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 303 (402)
T cd00378 232 GLILTRKGELA--------KKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKERGFKVV 303 (402)
T ss_pred eEEEeccHHHH--------HHHHHHhCccccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCCeEe
Confidence 9999987 553 55544333222222222 2222222232111124567788899999999999999998875
Q ss_pred -cCCCccEEEEECCC-CChHHHHHHHHHcCCeEecCCCC----CCCCCCCeEEEeecc------ChhHHHHHHHHHHHhh
Q 045431 365 -GGKNAPYVWVQFPG-RSSWDVFSEILEKTHVVTTPGSG----FGPGGEGFIRVSAFG------HRGNVLEACKRFKHLY 432 (433)
Q Consensus 365 -~~~~g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~----f~~~~~~~iRi~~~~------~~~~l~~~l~~l~~~l 432 (433)
.+.+++++|+++++ ......+..+++++||.+.++.. ++.....++|+++.. ++++++++++.|++++
T Consensus 304 ~~~~~~~~v~v~~~~~~~~~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~~~ 383 (402)
T cd00378 304 SGGTDNHLVLVDLRPKGITGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARAL 383 (402)
T ss_pred ecCCCCeEEEEeCCccCCCHHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 45688999999973 22334455566778999986432 111234689999622 5899999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-26 Score=207.37 Aligned_cols=343 Identities=20% Similarity=0.235 Sum_probs=242.7
Q ss_pred CCCceEEecCCCCC-CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc-cCC-CCCCcE--EEcCCh
Q 045431 61 PDAEVISLGIGDTT-EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK-DLG-IEEGDI--FVSDGA 135 (433)
Q Consensus 61 ~~~~~i~l~~g~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~-~~~-~~~~~i--~~~~G~ 135 (433)
+.++-|||+.|.+. ...-..+.+++.++-.+.........|-+..|.+++++++++.+.. ... +..+.| +-|.|+
T Consensus 24 ~R~~KVNLgIGvY~de~Gk~pvl~aV~~Ae~~l~~~~~~k~Yl~i~G~~~f~~~~~~llFG~d~~~l~~~Rv~t~Qt~GG 103 (396)
T COG1448 24 PRPNKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQEKTKNYLPIEGLPEFLEAVQKLLFGADSPALAEDRVATVQTLGG 103 (396)
T ss_pred CCcCeeeeeeeeeeCCCCCcchhHHHHHHHHHhhccccccccCCcCCcHHHHHHHHHHhcCCCcHHHHhhhHhheecCCc
Confidence 34467999999862 2222223333333333332235566899999999999999999853 111 233444 467899
Q ss_pred HHHHHHH---HHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-------CCCCCC
Q 045431 136 KCDISRL---QIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-------LSTVAR 205 (433)
Q Consensus 136 ~~al~~l---~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 205 (433)
+.||.+. ..-+.+...|.+++|+|+++..++..+| .++..+|.-+...-..+ +...+.
T Consensus 104 TGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~If~~aG------------l~v~~Y~Yyd~~~~~~df~~mla~L~~a~~ 171 (396)
T COG1448 104 TGALRVAADFLARFFPDATVWISDPTWPNHKAIFEAAG------------LEVETYPYYDAETKGLDFDGMLADLKTAPE 171 (396)
T ss_pred chHHHHHHHHHHHhCCCceEEeCCCCcHhHHHHHHhcC------------CceeeeeccccccccccHHHHHHHHHhCCC
Confidence 9998863 4445677889999999999999999999 46666665332222222 333455
Q ss_pred ccEEEEc-CCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCcccccCCCCcceEEEeccccccccc
Q 045431 206 TDIIFFC-SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN--PRSIFEIPGAKEVAIETSSFSKYAGFT 282 (433)
Q Consensus 206 ~~~i~l~-~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~vi~i~S~sK~~~~~ 282 (433)
-.+|+|. .+|||||.-++.+++++|+++.++.+.+.+.|-+|.+|..+-. ...+..+.....-+++..||||.||+-
T Consensus 172 ~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~~~~lva~S~SKnfgLY 251 (396)
T COG1448 172 GSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEVGPELLVASSFSKNFGLY 251 (396)
T ss_pred CCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHHhCCcEEEEehhhhhhhhh
Confidence 5677776 5599999999999999999999999999999999998865421 111211111122379999999999999
Q ss_pred ccceeeee--ccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-----hHHHHHHHHHHHHHHHHHHH
Q 045431 283 GVRLGWTV--IPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-----KAVHEVIGFYKENTDIIVET 355 (433)
Q Consensus 283 G~r~G~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~l~~~ 355 (433)
|-|+|.+. +.+... ..++...+........+.++.-...++...|++... ..++.+++++.++|..|.+.
T Consensus 252 gERVGa~~vva~~~~~---a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~~mR~~lv~~ 328 (396)
T COG1448 252 GERVGALSVVAEDAEE---ADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQRILEMRQALVDA 328 (396)
T ss_pred hhccceeEEEeCCHHH---HHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999643 333332 122233445555555666777777777888886554 34788999999999999999
Q ss_pred Hhhc----CCeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc-ChhHHHHHHHHHHH
Q 045431 356 FNSL----GFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG-HRGNVLEACKRFKH 430 (433)
Q Consensus 356 l~~~----g~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~l~~~l~~l~~ 430 (433)
|+++ .+.++..+.|||.+..+ +.+.+.+|.+++||.+..+ | |||++. ++..++...+.+.+
T Consensus 329 L~~~~~~~~f~~i~~Q~GMFsy~Gl----s~~QV~rLree~~IY~v~s--------G--Ri~vaGl~~~ni~~va~ai~~ 394 (396)
T COG1448 329 LKALGAPRNFDFIISQRGMFSYTGL----SPEQVDRLREEFGIYLVAS--------G--RINVAGLNTSNIDYVAKAIAA 394 (396)
T ss_pred HHhhCCCcccchHhhcCceeecCCC----CHHHHHHHHHhccEEEecC--------C--eeeeccCChhhHHHHHHHHHh
Confidence 9985 47778888999988754 3567788899999999742 2 899754 99999999999987
Q ss_pred hh
Q 045431 431 LY 432 (433)
Q Consensus 431 ~l 432 (433)
++
T Consensus 395 v~ 396 (396)
T COG1448 395 VL 396 (396)
T ss_pred hC
Confidence 63
|
|
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-27 Score=225.61 Aligned_cols=335 Identities=15% Similarity=0.118 Sum_probs=222.0
Q ss_pred EEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCC----CCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH
Q 045431 66 ISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYG----AEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR 141 (433)
Q Consensus 66 i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~----~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~ 141 (433)
+.|..+... ++|+.+.+++.+.+........ ..|. ...-..++|+.+++++ ++++++|++|+|+++++.+
T Consensus 2 ~yld~a~~~-~~~~~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~la~~~----g~~~~~i~~~~g~t~a~~~ 75 (381)
T PRK02948 2 IYLDYAATT-PMSKEALQTYQKAASQYFGNES-SLHDIGGTASSLLQVCRKTFAEMI----GGEEQGIYFTSGGTESNYL 75 (381)
T ss_pred EeccCCCCC-CCCHHHHHHHHHHHHhcCCCCc-cccHHHHHHHHHHHHHHHHHHHHh----CCCCCeEEEeCcHHHHHHH
Confidence 445555543 5788899999887764321111 1110 0122456777777776 8889999999999999886
Q ss_pred -HHHhc----CCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEEEEcC
Q 045431 142 -LQIVF----GSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIFFCS 213 (433)
Q Consensus 142 -l~~l~----~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~~ 213 (433)
+..++ ++||.|++..+.|+.+...+..+...+ .++..++.+.++..+.+ +++ .+++++|++++
T Consensus 76 ~~~~~~~~~~~~g~~vv~~~~~h~s~~~~~~~~~~~g---------~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~~~~ 146 (381)
T PRK02948 76 AIQSLLNALPQNKKHIITTPMEHASIHSYFQSLESQG---------YTVTEIPVDKSGLIRLVDLERAITPDTVLASIQH 146 (381)
T ss_pred HHHHHHHhccCCCCEEEECCcccHHHHHHHHHHHhCC---------CEEEEEeeCCCCCCCHHHHHHhcCCCCEEEEEEC
Confidence 45554 578999999988887766554443222 37778887644322222 222 25788999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccc
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPK 293 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~ 293 (433)
|+||||.+++ +++|.++|+++|+++|+|+++.. .. .+..+... +..+++.|+||.+|.+| +|++++++
T Consensus 147 ~~n~tG~~~~---~~~I~~l~~~~~~~vivD~~~~~-g~--~~~~~~~~----~~d~~~~s~~K~~gp~G--~G~l~~~~ 214 (381)
T PRK02948 147 ANSEIGTIQP---IAEIGALLKKYNVLFHSDCVQTF-GK--LPIDVFEM----GIDSLSVSAHKIYGPKG--VGAVYINP 214 (381)
T ss_pred CcCCcEeehh---HHHHHHHHHHcCCEEEEEChhhc-cc--cccCcccC----CCCEEEecHHhcCCCCc--EEEEEEcC
Confidence 9999999988 67888999999999999987663 21 12222222 34588999999998778 79998887
Q ss_pred cccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCcc---
Q 045431 294 ELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAP--- 370 (433)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~--- 370 (433)
++... ...............+++.+++.++.++++.. .+++++.++++++.++++.+.|+++|+++.......
T Consensus 215 ~~~~~---~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~ 290 (381)
T PRK02948 215 QVRWK---PVFPGTTHEKGFRPGTVNVPGIAAFLTAAENI-LKNMQEESLRFKELRSYFLEQIQTLPLPIEVEGHSTSCL 290 (381)
T ss_pred CCCCC---CcccCCCCCCCcCCCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEeCCCccCc
Confidence 65100 00000000011123457778888778777632 245788889999999999999999887654321111
Q ss_pred --EEEEECCCCChHHHHHHHHHcCCeEecCCCCCCC-----------------CCCCeEEEee--ccChhHHHHHHHHHH
Q 045431 371 --YVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGP-----------------GGEGFIRVSA--FGHRGNVLEACKRFK 429 (433)
Q Consensus 371 --~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~-----------------~~~~~iRi~~--~~~~~~l~~~l~~l~ 429 (433)
.+.+.+++.+..++...+ .++||.+++|..|.. ...+++|+|+ +++++|++++++.|+
T Consensus 291 ~~i~~~~~~~~~~~~~~~~l-~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~~l~ 369 (381)
T PRK02948 291 PHIIGVTIKGIEGQYTMLEC-NRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIHALE 369 (381)
T ss_pred CCEEEEEeCCCCHHHHHHhc-ccCCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 233344554556666665 566999999886421 1147899996 468999999999998
Q ss_pred Hhh
Q 045431 430 HLY 432 (433)
Q Consensus 430 ~~l 432 (433)
+++
T Consensus 370 ~~~ 372 (381)
T PRK02948 370 TIG 372 (381)
T ss_pred HHH
Confidence 865
|
|
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-26 Score=221.69 Aligned_cols=280 Identities=14% Similarity=0.125 Sum_probs=191.3
Q ss_pred CHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceE
Q 045431 107 EKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKI 185 (433)
Q Consensus 107 ~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 185 (433)
..++++.+|+++ +++ ++++++|+++++.. +..++++||.|+++.+.|.+....++..| .++
T Consensus 53 ~~~~~e~lA~~~----g~~--~~~i~~g~~~a~~~~~~~l~~~gd~Vl~~~~~h~s~~~~~~~~g------------~~~ 114 (370)
T TIGR02539 53 IHDFLEDLAEFL----GMD--EARVTHGAREGKFAVMHALCKEGDWVVLDGLAHYTSYVAAERAG------------LNV 114 (370)
T ss_pred HHHHHHHHHHHh----CCC--ceEEECChHHHHHHHHHHhhCCCCEEEECCcccHHHHHHHHHcC------------CEE
Confidence 567888899887 654 56678999999987 57788999999999999777666677777 477
Q ss_pred EEeecCccCCcccCCC---C-C--------CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccC
Q 045431 186 EYMRCTAENGFFPDLS---T-V--------ARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISD 253 (433)
Q Consensus 186 ~~~~~~~~~~~~~~~~---~-~--------~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~ 253 (433)
+.++.+.+.++..+++ + . .++++|++++|+||||...+ +++|.++|+++|+++|+|++|+....
T Consensus 115 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~---l~~i~~la~~~~~~livDea~~~g~~- 190 (370)
T TIGR02539 115 KEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPD---AGKVAKVCREKGVPLLLNCAYTVGRM- 190 (370)
T ss_pred EEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccC---HHHHHHHHHHcCCeEEEECccccCCc-
Confidence 7888753322333322 1 1 26789999999999999877 77888899999999999999996321
Q ss_pred CCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhcc--------CCCcHHHHHH
Q 045431 254 DNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCF--------NGASNISQAG 325 (433)
Q Consensus 254 ~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~q~~ 325 (433)
+.+.... +..++++||||+++ +|.|+||++++++++ +.+........ .......+.+
T Consensus 191 --~~~~~~~----~~di~v~s~sK~~~-~~g~~G~l~~~~~~i--------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (370)
T TIGR02539 191 --PVSAKEI----GADFIVGSGHKSMA-ASGPCGVLGMSEEWE--------DIVLRKSRYSPVKEVELLGCTSRGAPIVT 255 (370)
T ss_pred --CCCHHHc----CCCEEEeeCccccc-CCCCEEEEEECHHHH--------hhhcccccCCccceeeeecccccccHHHH
Confidence 2222222 23477899999998 677899999998886 33333221100 1111123443
Q ss_pred HHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeee--cCCCccEEEEECCCC---------ChHHHHHHHHHcCCe
Q 045431 326 GLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVY--GGKNAPYVWVQFPGR---------SSWDVFSEILEKTHV 394 (433)
Q Consensus 326 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~--~~~~g~~~~~~~~~~---------~~~~~~~~l~~~~gi 394 (433)
+.+++... .+++++..+.++. ++++.+.|+++|+.+. .+..++|++++++.. ....+.+.| +++||
T Consensus 256 ~~~al~~~-~~~l~~~~~~~~~-~~~l~~~L~~~g~~~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L-~e~GI 332 (370)
T TIGR02539 256 MMASFPHV-VERVKRWDEEVKK-TRWFVAELEDIGFIQLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLYEEL-KKRGI 332 (370)
T ss_pred HHHHHHHH-HHHHHHHHHHHHH-HHHHHHHHHhCCcEEEccCCCcCceEEEECCchhHHhhhhccccHHHHHHH-HhCCC
Confidence 44444311 2334444444444 4689999999998863 356788999998632 122355555 45599
Q ss_pred E-ecCCCCCCCCCCCeEEEee-ccChhHHHHHHHHHHHhh
Q 045431 395 V-TTPGSGFGPGGEGFIRVSA-FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 395 ~-v~~g~~f~~~~~~~iRi~~-~~~~~~l~~~l~~l~~~l 432 (433)
. +++| .++++|+++ ..+++++++++++|++++
T Consensus 333 ~~ir~~------~~~~iRis~~~~t~e~i~~l~~~L~~~~ 366 (370)
T TIGR02539 333 HGIRSG------QTKYFKLSVYGLTKEQVEYVVDSFEEIV 366 (370)
T ss_pred ccccCC------cceEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 7 5543 246899995 459999999999998875
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-26 Score=222.73 Aligned_cols=341 Identities=13% Similarity=0.167 Sum_probs=214.9
Q ss_pred HhcCCCCceEEecCCCC---CCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcC
Q 045431 57 MLKYPDAEVISLGIGDT---TEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSD 133 (433)
Q Consensus 57 ~~~~~~~~~i~l~~g~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~ 133 (433)
....+++..+|+..|.. --..+|.+.+++.+++.+... .. ..| ..+....+++.+.+.. ..+++++++
T Consensus 25 ~~d~dG~~~lD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~-~~-~~~-----~~~~~~~la~~l~~~~--~~~~v~~~~ 95 (389)
T PRK01278 25 LIDEDGERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWH-VS-NLY-----RIPEQERLAERLVENS--FADKVFFTN 95 (389)
T ss_pred EEECCCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhcCc-cc-ccc-----CChHHHHHHHHHHhhC--CCCEEEEcC
Confidence 34456778999987532 123678999999999875321 11 112 1233344555543322 347999999
Q ss_pred ChHHHHHH-HHHh----cCCCC----EEEEeCCCChhhhhhHHHhCCcccccc-cccccceEEEeecCccCCcccCCCCC
Q 045431 134 GAKCDISR-LQIV----FGSNV----TMAVQDPSYPAYVDSSVIMGQTGEFQK-DAEKYGKIEYMRCTAENGFFPDLSTV 203 (433)
Q Consensus 134 G~~~al~~-l~~l----~~~gd----~Vl~~~p~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (433)
|+++++.. +..+ ..+|| +|++.+++|+++.......+....+.. +.........++..+...+...+ .
T Consensus 96 sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l--~ 173 (389)
T PRK01278 96 SGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAI--T 173 (389)
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCCHHHHHHhh--C
Confidence 99999986 4332 35676 899999999998766665553221110 00000111122221111111111 2
Q ss_pred CCccEEEEcCCCCccc-cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccc
Q 045431 204 ARTDIIFFCSPNNPTG-AAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFT 282 (433)
Q Consensus 204 ~~~~~i~l~~p~nPtG-~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~ 282 (433)
+++++|++..++||+| .+++.+++++|.++|++||+++|+||+|.++.+.+.........-.+| +.||||.++ +
T Consensus 174 ~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pd----i~t~sK~l~-~ 248 (389)
T PRK01278 174 PNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPD----IMAVAKGIG-G 248 (389)
T ss_pred CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCCCCC----EEEEehhcc-C
Confidence 4788888876688888 788999999999999999999999999998766554322211111133 358999998 9
Q ss_pred ccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcC---Ch-hHHHHHHHHHHHHHHHHHHHHhh
Q 045431 283 GVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPE---GF-KAVHEVIGFYKENTDIIVETFNS 358 (433)
Q Consensus 283 G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~-~~~~~~~~~~~~~~~~l~~~l~~ 358 (433)
|+|+||++++++++ +.+.......+.+.+++.|.++.+.++.. .. ++++++.+.++++.+.+. ++
T Consensus 249 G~~ig~~~~~~~~~--------~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~l~~l~---~~ 317 (389)
T PRK01278 249 GFPLGACLATEEAA--------KGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMGLYLKQKLEGLV---DR 317 (389)
T ss_pred CcceEEEEEcHHHH--------hccCCCCCCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH---hh
Confidence 99999999998874 33433344455568899999987777521 11 223333333333333322 22
Q ss_pred cC-C-eeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhhC
Q 045431 359 LG-F-KVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 359 ~g-~-~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l~ 433 (433)
+. + ....+ .|.++|+.++. +..++...++++ ||.+.|+. .+++||++ ..+++++++++++|+++++
T Consensus 318 ~~~~~~~v~g-~G~~~~i~~~~-~~~~~~~~l~~~-GV~~~p~~------~~~lR~~p~~~~~~~~i~~~l~~l~~~l~ 387 (389)
T PRK01278 318 FPDVIEEVRG-KGLLLGLKCVV-PNRDLVQALRDE-GLLTVGAG------DNVVRLLPPLIITEEEIDEALERLERAAE 387 (389)
T ss_pred CCCceeeEec-ccEEEEEEEec-CHHHHHHHHHHC-CeEEeecC------CCEEEEeCCcccCHHHHHHHHHHHHHHHH
Confidence 21 2 22333 67888888753 566777787776 99998863 47899994 5689999999999998763
|
|
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-26 Score=218.90 Aligned_cols=316 Identities=13% Similarity=0.097 Sum_probs=208.0
Q ss_pred CCCCChHHHHHHHHHHHhhcccCCCCC---CCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCC
Q 045431 73 TTEPIPEVITSALAKRSYALSTQEGYS---GYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGS 148 (433)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~~~~~~~~~~---~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~ 148 (433)
++.+..+.+.+++.+......+..... .+....-..++++.+++++ ++ +++++|+|+++++.+ +..++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g~--~~i~~~~g~t~al~~~l~~~~~~ 82 (361)
T cd06452 9 RGGRLTPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFL----GM--DEARVTPGAREGKFAVMHSLCEK 82 (361)
T ss_pred cCCCCCHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHc----CC--ceEEEeCCHHHHHHHHHHHhcCC
Confidence 345677888888888764433211111 1111234678999999987 66 789999999999987 6778899
Q ss_pred CCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----C-------CCccEEEEcCCCC
Q 045431 149 NVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----V-------ARTDIIFFCSPNN 216 (433)
Q Consensus 149 gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-------~~~~~i~l~~p~n 216 (433)
||+|++++++|.+....++..| .+++.++.+.++.+..+++. . ++++++++++|+|
T Consensus 83 gd~Vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n 150 (361)
T cd06452 83 GDWVVVDGLAHYTSYVAAERAG------------LNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDG 150 (361)
T ss_pred CCEEEEcCCcchHHHHHHHhcC------------CEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCC
Confidence 9999999999888776777777 47888887654423333211 1 3688999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecccccc
Q 045431 217 PTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELL 296 (433)
Q Consensus 217 PtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~ 296 (433)
|||...+ +++|.++|+++|+++|+|++|+.... +.+...+ +..++++|+||+++ ++.|+||++++++++
T Consensus 151 ~tG~~~~---~~~i~~~~~~~~~~vivD~a~~~g~~---~~~~~~~----~~d~~~~s~~K~l~-~~~~~G~l~~~~~~~ 219 (361)
T cd06452 151 NYGNLHD---AKKIAKVCHEYGVPLLLNGAYTVGRM---PVSGKEL----GADFIVGSGHKSMA-ASAPIGVLATTEEWA 219 (361)
T ss_pred CCeeecc---HHHHHHHHHHcCCeEEEECCcccCCc---CCCHHHc----CCCEEEecCCcccc-CCCCeEEEEECHHHH
Confidence 9998765 78999999999999999999983211 2223222 23589999999997 667999999998775
Q ss_pred ccCCcchhHHHHHHHhh------cc--CCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeec--
Q 045431 297 FSDGFPVAKDFNRIVCT------CF--NGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYG-- 365 (433)
Q Consensus 297 ~~~~~~~~~~~~~~~~~------~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~-- 365 (433)
+.+.+.... .. .......+.++.+.+.. ..++++...+ ..++++++.+.|+++ |+++..
T Consensus 220 --------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~~~~~~~~~~-~~~~~~~l~~~L~~l~g~~v~~~~ 289 (361)
T cd06452 220 --------DIVFRTSQMFKIKEVELLGCTLRGAPLVTLMASFPH-VKERVKRWDE-EVEKARWFVAELEKIEGIKQLGEK 289 (361)
T ss_pred --------HHHhccccccccceeeeeccccCchHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHHHHhcCCCeEEECCC
Confidence 333322210 00 01111122222333321 0122333332 334557888999998 888762
Q ss_pred CCCccEEEEECCCC---------ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee-ccChhHHHHHHHHHHHhhC
Q 045431 366 GKNAPYVWVQFPGR---------SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA-FGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 366 ~~~g~~~~~~~~~~---------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~-~~~~~~l~~~l~~l~~~l~ 433 (433)
+...+++.++.+.. ...++.+.|++ +||.+.+ ....+++|++. ..++++++.+++.|+++++
T Consensus 290 ~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~gI~~~~-----~~~~~~~ri~~~g~~~e~~~~l~~al~~~~~ 361 (361)
T cd06452 290 PKNHDLMFFETPSFDEIAKKHKRRGYFLYSELKK-RGIHGIK-----PGLTRYFKLSTYGLTWEQVEYVVDAFKEIAE 361 (361)
T ss_pred CCCCceEEEEcCCcchhhhhccccchhHHHHHHH-cCceEEc-----CCCceEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 34556777776521 12246666655 4998532 22245899996 4599999999999998764
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.6e-27 Score=209.61 Aligned_cols=307 Identities=18% Similarity=0.272 Sum_probs=204.8
Q ss_pred CCCC-CCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHH-HH-HH-HHhc----C--------CCCEEEEeCCCChh
Q 045431 98 YSGY-GAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCD-IS-RL-QIVF----G--------SNVTMAVQDPSYPA 161 (433)
Q Consensus 98 ~~~Y-~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~a-l~-~l-~~l~----~--------~gd~Vl~~~p~~~~ 161 (433)
..+| +...|++++|+-+|+.+ +++++||++..+++-. +. ++ .+++ . +.-+.+++.|+|..
T Consensus 61 ~RNY~G~l~Gipe~r~l~a~ll----gv~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDR 136 (425)
T PF12897_consen 61 CRNYPGGLDGIPEARELFAELL----GVPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDR 136 (425)
T ss_dssp TTSS-S-SS--HHHHHHHHHHH----TS-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HH
T ss_pred ccCCCCccCChHHHHHHHHHHh----CCCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchH
Confidence 4589 88999999999999999 9999999988776644 33 23 3332 1 12367999999999
Q ss_pred hhhhHHHhCCcccccccccccceEEEeecCccCCcccC----C-CCCCCccEEEEcCC--CCccccCCCHHHHHHHHHH-
Q 045431 162 YVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD----L-STVARTDIIFFCSP--NNPTGAAATREQLTRLVQF- 233 (433)
Q Consensus 162 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~i~l~~p--~nPtG~~~~~~~~~~i~~~- 233 (433)
+..+++.+| ++++.+|+.+++ .+.+ + ...+.+|.|+ |.| +||||.+||.|..++++.+
T Consensus 137 HFai~E~~G------------iemi~VpM~~dG-PDmD~Ve~LV~~D~svKGiW-cVP~ySNPtG~tySde~vrrlA~m~ 202 (425)
T PF12897_consen 137 HFAITEHFG------------IEMIPVPMTEDG-PDMDMVEELVAEDPSVKGIW-CVPKYSNPTGITYSDEVVRRLAAMK 202 (425)
T ss_dssp HHHHHHHCT-------------EEEEEEEETTE-E-HHHHHHHTHTSTTEEEEE-E-SSS-TTT-----HHHHHHHHHS-
T ss_pred HHHHHHhhC------------cEEEecCCCCCC-CCHHHHHHHHhcCCccceEE-eCCCccCCCCccCCHHHHHHHhcCC
Confidence 999999999 588899987653 2222 2 2357889877 455 8999999999999999998
Q ss_pred HHHcCCEEEEecccccccc-CCCC----Ccccc---cCCCCcceEEEecccccccccccceeeeeccccccccCCcchhH
Q 045431 234 AKDNGSIIVYDSAYALYIS-DDNP----RSIFE---IPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAK 305 (433)
Q Consensus 234 a~~~~~~li~De~~~~~~~-~~~~----~~~~~---~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~ 305 (433)
+...+..|+.|++|+-... +..+ ..+.+ -.+.+++++.+.|+||.. +||-+++|+.++...+ +
T Consensus 203 ~AA~DFRI~WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKIT-f~GaGva~~aaS~~Nl--------~ 273 (425)
T PF12897_consen 203 TAAPDFRIFWDNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKIT-FPGAGVAFFAASEANL--------A 273 (425)
T ss_dssp -SSTT-EEEEE-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS--TTSS-EEEEE-HHHH--------H
T ss_pred cCCcCeEEEeecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEecccccc-cCCcceeeeecCHHHH--------H
Confidence 3357999999999986443 2211 12332 246689999999999988 6999999999999886 7
Q ss_pred HHHHHHhhccCCCcHHHHHHHHHhcCcCC--h-hHHHHHHHHHHHHHHHHHHHHhhc-C-----CeeecCCCccEEEEEC
Q 045431 306 DFNRIVCTCFNGASNISQAGGLACLSPEG--F-KAVHEVIGFYKENTDIIVETFNSL-G-----FKVYGGKNAPYVWVQF 376 (433)
Q Consensus 306 ~~~~~~~~~~~~~~~~~q~~~~~~l~~~~--~-~~~~~~~~~~~~~~~~l~~~l~~~-g-----~~~~~~~~g~~~~~~~ 376 (433)
.+.+.....+.++..+.|..-.++|.+.. . .|+++.++.++-+.+.+.+.|++. | ..|..|.+|+|++++.
T Consensus 274 ~~~~~~~~~tIgpdKvNQLRHvrff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsld~ 353 (425)
T PF12897_consen 274 WIKKHLSVQTIGPDKVNQLRHVRFFKDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPKGGYFISLDV 353 (425)
T ss_dssp HHHHHHHHH-S---HHHHHHHHHHHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEEEE
T ss_pred HHHHHhcCceeCccHHHHHHHHHHhcChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEEec
Confidence 78888888888899999999899998643 2 689999999999999888887653 3 4788999999999999
Q ss_pred CCCChHHHHHHHHHcCCeEecC-CCCCCC---CCCCeEEEee-ccChhHHHHHHHHHHHhh
Q 045431 377 PGRSSWDVFSEILEKTHVVTTP-GSGFGP---GGEGFIRVSA-FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 377 ~~~~~~~~~~~l~~~~gi~v~~-g~~f~~---~~~~~iRi~~-~~~~~~l~~~l~~l~~~l 432 (433)
....+.. ..+++++.||.+.| |..|.. ..+..|||+- +-+.+|++.+.+.+.-++
T Consensus 354 ~~G~Akr-vV~lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P~leel~~Am~~~~~cv 413 (425)
T PF12897_consen 354 LDGTAKR-VVELAKEAGVALTPAGATFPYGKDPRDSNIRIAPSYPSLEELETAMDVFATCV 413 (425)
T ss_dssp STT-HHH-HHHHHHHTTEE---TTTTSGGG--TTS-EEEE--SSS-HHHHHHHHHHHHHHH
T ss_pred CCChHHH-HHHHHHHhCceeCCCCCCCCCCCCCCCCcEEecCCCCCHHHHHHHHHHHHHHH
Confidence 8645544 45667788999999 777742 2356899995 568999999999887654
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-26 Score=221.89 Aligned_cols=329 Identities=13% Similarity=0.159 Sum_probs=222.6
Q ss_pred CChHHHHHHHHHHHhhc-ccCCCCCCCCCCCCCHHHHHHHHHHHhccCCC-CCCcEEEcCChHHHHHH-HHHh-----cC
Q 045431 76 PIPEVITSALAKRSYAL-STQEGYSGYGAEQGEKPLRAAIASTFYKDLGI-EEGDIFVSDGAKCDISR-LQIV-----FG 147 (433)
Q Consensus 76 ~~~~~~~~a~~~~~~~~-~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~-~~~~i~~~~G~~~al~~-l~~l-----~~ 147 (433)
+.++.+.+++.+.+... .+......|+ ..+...+++++++++. .+++ ++++|++|+|+++++.+ +..+ ++
T Consensus 10 ~~~~~v~~~~~~~~~~~~~n~~~~~~~~-~~~~~~l~~a~~~~~~-~~~~~~~~~i~~t~g~teal~~~~~~~~~~~~~~ 87 (382)
T TIGR03403 10 MLDPKVKELMDPFFCDIYGNPNSLHQFG-TATHPAIAEALDKLYK-GINARDLDDIIITSCATESNNWVLKGVYFDEILK 87 (382)
T ss_pred CCCHHHHHHHHHHHHhcCcCCccccHHH-HHHHHHHHHHHHHHHH-HcCcCCCCeEEEeCCHHHHHHHHHHHHHHhhccc
Confidence 46778999998888653 2222333453 4567889999888864 3444 68999999999999997 4443 24
Q ss_pred C-CCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEEEEcCCCCccccCCC
Q 045431 148 S-NVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIFFCSPNNPTGAAAT 223 (433)
Q Consensus 148 ~-gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~~p~nPtG~~~~ 223 (433)
+ +++|++..+.|+++...+..+...+ .+++.++.++++.+..+ +++ .++++++++++|+||||.+++
T Consensus 88 ~~~~~vi~~~~e~ps~~~~~~~~~~~G---------~~v~~v~~~~~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~ 158 (382)
T TIGR03403 88 GGKNHIITTEVEHPAVRATCAFLESLG---------VEVTYLPINEQGTITAEQVREAITEKTALVSVMWANNETGMIFP 158 (382)
T ss_pred CCCCEEEEcCCccHHHHHHHHHHHHCC---------CEEEEEecCCCCCCCHHHHHHhcccCCeEEEEEcccCCCccccC
Confidence 5 4789999888887766554332222 37888888654333222 222 357889999999999999999
Q ss_pred HHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcch
Q 045431 224 REQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPV 303 (433)
Q Consensus 224 ~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~ 303 (433)
+++|.++|+++|+++++|++++... .+..+... +..+++.|++|++|.+| +|++++++.... .+.+
T Consensus 159 ---~~~I~~la~~~g~~~ivD~a~~~g~---~~~~~~~~----~~D~~~~s~~K~~gp~G--~g~l~vr~~~~~--~p~~ 224 (382)
T TIGR03403 159 ---IKEIGEICKERGVLFHTDAVQAIGK---IPVDVQKA----GVDFLSFSAHKFHGPKG--VGGLYIRKGVEL--TPLF 224 (382)
T ss_pred ---HHHHHHHHHHcCCEEEEechhhcCC---CccCcccc----CCCEEEEcchhhCCCCc--eEEEEECCCCCC--CCcc
Confidence 6688888999999999999987321 12222221 12388899999988777 688887765421 0100
Q ss_pred hHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCC---ccEEEEECCCC
Q 045431 304 AKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKN---APYVWVQFPGR 379 (433)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~---g~~~~~~~~~~ 379 (433)
... .........+++.+.+.++.++++. ..+.++...+++++.++++.+.|+++ |+.+..+.. ..++.+.+++.
T Consensus 225 ~g~-~~~~~~~~gt~~~~~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (382)
T TIGR03403 225 HGG-EHMGGRRSGTLNVPYIVAMGEAMRL-ANEYLDFEKSHVRRLRDRLEDALLELPDVFVVGDREHRVPNTILISIKGV 302 (382)
T ss_pred cCC-CCCCCcccCCcChHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCcCCEEEEEeCCC
Confidence 000 0000111244667777666666652 22346777889999999999999886 788776532 44667777766
Q ss_pred ChHHHHHHHHHcCCeEecCCCCCCCC-----------------CCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 380 SSWDVFSEILEKTHVVTTPGSGFGPG-----------------GEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 380 ~~~~~~~~l~~~~gi~v~~g~~f~~~-----------------~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
+..++...| .++||.++.|..|... ..+.||+|+ +++++|++++++.|++++
T Consensus 303 ~~~~~~~~L-~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~~~ 373 (382)
T TIGR03403 303 EGEAMLWDL-NKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKAV 373 (382)
T ss_pred CHHHHHHhh-ccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 777777665 4569999988766311 136799995 679999999999998765
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=224.96 Aligned_cols=344 Identities=10% Similarity=0.071 Sum_probs=218.6
Q ss_pred cCCCCceEEecCCC--CCCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCCh
Q 045431 59 KYPDAEVISLGIGD--TTEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGA 135 (433)
Q Consensus 59 ~~~~~~~i~l~~g~--~~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~ 135 (433)
..++...|||..|. ..+. .++.+.+++.+++... ..|....+..++...+++.+.+.++.++++|++++|+
T Consensus 32 d~dG~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sg 105 (413)
T cd00610 32 DVDGNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKL------THFSLGFFYNEPAVELAELLLALTPEGLDKVFFVNSG 105 (413)
T ss_pred eCCCCEEEEcCccHHhhccCCCCHHHHHHHHHHHHhC------cCccCcccCCHHHHHHHHHHHHhCCCCCCEEEEcCcH
Confidence 34567899998863 2344 7889999999988542 2332222345555555555555446678899999999
Q ss_pred HHHHHHH-HHh--cCCCCEEEEeCCCChhhhhhHHHhCCcc-cccccccccceEEEeecCccC----CcccC---CC---
Q 045431 136 KCDISRL-QIV--FGSNVTMAVQDPSYPAYVDSSVIMGQTG-EFQKDAEKYGKIEYMRCTAEN----GFFPD---LS--- 201 (433)
Q Consensus 136 ~~al~~l-~~l--~~~gd~Vl~~~p~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~--- 201 (433)
++++..+ ..+ ..++++|++.+++|++........+... ....+.....+++.++.+... .+..+ ++
T Consensus 106 sea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l 185 (413)
T cd00610 106 TEAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEAL 185 (413)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHH
Confidence 9999874 333 3678999999999998765554443211 000001111235556554210 01111 11
Q ss_pred -CC-CCccEEEEcCC-CCccccCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccc
Q 045431 202 -TV-ARTDIIFFCSP-NNPTGAAA-TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSK 277 (433)
Q Consensus 202 -~~-~~~~~i~l~~p-~nPtG~~~-~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK 277 (433)
.. .++++ ++++| +|++|.++ +.+++++|.++|++||+++|+||+|+.+...+...........++ +.|+||
T Consensus 186 ~~~~~~~~~-vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~~~~~~~~~d----~~t~sK 260 (413)
T cd00610 186 EEHPEEVAA-VIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVEPD----IVTLGK 260 (413)
T ss_pred hcCCCCEEE-EEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhhHhhcCCCCC----eEEEcc
Confidence 11 24444 44556 67779876 677899999999999999999999997644433222111211122 458999
Q ss_pred cccccccceeeeeccccccccCCcchhHHH--HHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHH
Q 045431 278 YAGFTGVRLGWTVIPKELLFSDGFPVAKDF--NRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVET 355 (433)
Q Consensus 278 ~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 355 (433)
.++ +|+|+||++++++++ +.+ .......+.+.+++++.++.+.++.... ..+.++++++.+.+.+.
T Consensus 261 ~l~-~g~~~g~~~~~~~~~--------~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l~~---~~~~~~~~~~~~~l~~~ 328 (413)
T cd00610 261 GLG-GGLPLGAVLGREEIM--------DAFPAGPGLHGGTFGGNPLACAAALAVLEVLEE---EGLLENAAELGEYLRER 328 (413)
T ss_pred ccc-CccccEEEEEcHHHH--------HhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHH
Confidence 998 689999999988775 332 2233334556788888888777652111 34556677777777777
Q ss_pred Hhhc----CCeeecCCCccEEEEECCCC---------ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhH
Q 045431 356 FNSL----GFKVYGGKNAPYVWVQFPGR---------SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGN 420 (433)
Q Consensus 356 l~~~----g~~~~~~~~g~~~~~~~~~~---------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~ 420 (433)
|++. ++.......|.++|+.++.. ....+...+. ++||.+.|+. .+++|+++ ..++++
T Consensus 329 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gv~v~~~~------~~~lR~~~~~~~t~~~ 401 (413)
T cd00610 329 LRELAEKHPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAAL-ERGLLLRPSG------GNVIRLLPPLIITEEE 401 (413)
T ss_pred HHHHHhhCCcEEEeecCceEEEEEEecCCCcCCcchHHHHHHHHHHH-HCCeEEeecC------CCEEEEECCCcCCHHH
Confidence 7664 22221224678888888632 2344555555 4599999874 46799984 458999
Q ss_pred HHHHHHHHHHhh
Q 045431 421 VLEACKRFKHLY 432 (433)
Q Consensus 421 l~~~l~~l~~~l 432 (433)
+++++++|++++
T Consensus 402 i~~~~~~l~~~l 413 (413)
T cd00610 402 IDEGLDALDEAL 413 (413)
T ss_pred HHHHHHHHHHhC
Confidence 999999998864
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.3e-26 Score=215.33 Aligned_cols=341 Identities=19% Similarity=0.220 Sum_probs=247.9
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCC----CCCHHHHHHHHHHHhccCCCCC-CcEEEcCChH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAE----QGEKPLRAAIASTFYKDLGIEE-GDIFVSDGAK 136 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~----~g~~~lr~~la~~l~~~~~~~~-~~i~~~~G~~ 136 (433)
+.+++.|..+.... .|..+.+++.+.+.++....+...|... .-+.+.|+.+++++ ++++ ++|++|.|+|
T Consensus 20 ~~~~vylD~aa~~~-~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~----~a~~~~eIvft~~tT 94 (405)
T COG0520 20 GKPLVYLDNAATSQ-KPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFL----NADSSDEIVFTRGTT 94 (405)
T ss_pred CCCeEEecCccccc-CCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHh----CCCCCCeEEEeCChh
Confidence 44578888877653 8999999999988765432332233222 25677888888887 8884 9999999999
Q ss_pred HHHHHH-HHh---cCCCCEEEEeCCCChhhhhhHHHhCCc-ccccccccccceEEEeecCccCCcccC-CCC--CCCccE
Q 045431 137 CDISRL-QIV---FGSNVTMAVQDPSYPAYVDSSVIMGQT-GEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDI 208 (433)
Q Consensus 137 ~al~~l-~~l---~~~gd~Vl~~~p~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~ 208 (433)
++++++ .++ +.+||+|++.+-.|++....++.+..+ | .++..+|.++++.+..+ ++. .++||+
T Consensus 95 ~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~G---------a~v~~i~~~~~g~~~~~~~~~~i~~~Tkl 165 (405)
T COG0520 95 EALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTG---------AKVRVIPLDDDGLLDLDALEKLITPKTKL 165 (405)
T ss_pred HHHHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcC---------cEEEEEecCCCCCcCHHHHHHhcCCCceE
Confidence 999984 555 699999999999998877666665543 3 37899998855444433 222 478999
Q ss_pred EEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccc-ccccccccee
Q 045431 209 IFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSK-YAGFTGVRLG 287 (433)
Q Consensus 209 i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK-~~~~~G~r~G 287 (433)
|.+++-+|.||++.+ +++|+++|+++|+++++|.+++--.. +..+..+ +..+++.|.+| .+|..| +|
T Consensus 166 vais~vSn~tG~~~p---v~~I~~la~~~ga~v~VDaaq~~~h~---~idv~~l----~~Df~afsgHKwl~gP~G--iG 233 (405)
T COG0520 166 VALSHVSNVTGTVNP---VKEIAELAHEHGALVLVDAAQAAGHL---PIDVQEL----GCDFLAFSGHKWLLGPTG--IG 233 (405)
T ss_pred EEEECccccccccch---HHHHHHHHHHcCCEEEEECccccCcc---CCCchhc----CCCEEEEcccccccCCCc--eE
Confidence 999999999999988 89999999999999999999883211 3444443 34599999999 555335 89
Q ss_pred eeeccccccccCCc-----------------chhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHH
Q 045431 288 WTVIPKELLFSDGF-----------------PVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTD 350 (433)
Q Consensus 288 ~l~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 350 (433)
+++++++++....+ .......++...+.+....+...++..+++..+ ++++.++.++..+
T Consensus 234 vLy~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig---~~~i~~~e~~L~~ 310 (405)
T COG0520 234 VLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIG---MEAIEAHERELTE 310 (405)
T ss_pred EEEEchHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHh---HHHHHHHHHHHHH
Confidence 99999998743111 011122333333333333444444455555443 5788888999999
Q ss_pred HHHHHHhhc-CCeeecCC---CccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCC------CCCeEEEee--ccCh
Q 045431 351 IIVETFNSL-GFKVYGGK---NAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPG------GEGFIRVSA--FGHR 418 (433)
Q Consensus 351 ~l~~~l~~~-g~~~~~~~---~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~------~~~~iRi~~--~~~~ 418 (433)
++.+.|+++ ++.+..+. .+..+.+.+++....++...|.++ ||.++.|..|... -...+|+|+ |++.
T Consensus 311 ~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~~~~~dv~~~L~~~-gI~vr~g~~ca~p~~~~~~~~~~iR~S~~~YNt~ 389 (405)
T COG0520 311 YLLEGLSELPGVEIYGPPDADRGGIVSFNVKGIHPHDVATLLDEK-GIAVRAGHHCAQPLHRLLGVDATIRASLHLYNTE 389 (405)
T ss_pred HHHHHHhcCCCeEEecCCcccCceEEEEEeCCCCHHHHHHHHHhC-CeEEEeccccccHHHHhcCCCCceEEEEeecCCH
Confidence 999999998 78887764 466788888887888888887766 8999999887532 134599994 7899
Q ss_pred hHHHHHHHHHHHhh
Q 045431 419 GNVLEACKRFKHLY 432 (433)
Q Consensus 419 ~~l~~~l~~l~~~l 432 (433)
+|++.+++.|+++.
T Consensus 390 edid~l~~aL~~~~ 403 (405)
T COG0520 390 EDVDRLLEALKKAL 403 (405)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999875
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.9e-26 Score=219.58 Aligned_cols=336 Identities=14% Similarity=0.148 Sum_probs=220.8
Q ss_pred CceEEecCCCC-CCCChHHHHHHHHHHHhhcccCCCCC--CCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHH
Q 045431 63 AEVISLGIGDT-TEPIPEVITSALAKRSYALSTQEGYS--GYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDI 139 (433)
Q Consensus 63 ~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~~~~~~~~--~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al 139 (433)
.++++|+.+++ .+..++++.+++.+++.+++...... .++...-..+|++.+|+++ +. +..+++++|+....
T Consensus 45 ~~~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~----g~-~~~~~~~SG~~An~ 119 (406)
T PRK13393 45 REVTVWCSNDYLGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLH----GK-EAALLFTSGYVSNW 119 (406)
T ss_pred ccEEEeecccccCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHh----CC-CcEEEeCCcHHHHH
Confidence 56899998876 46678999999999998764311111 1112223466777777776 53 45677777775433
Q ss_pred HHHHHhcC--CCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC--CCCccEEEEcCCC
Q 045431 140 SRLQIVFG--SNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST--VARTDIIFFCSPN 215 (433)
Q Consensus 140 ~~l~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~p~ 215 (433)
.++..+.+ +||.|+.....|......+...|. ++..++..+...+...+.. .+++++|++++++
T Consensus 120 ~ai~~l~~~~~g~~I~~~~~~H~s~~~~~~~~g~------------~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~~~v~ 187 (406)
T PRK13393 120 AALSTLGSRLPGCVILSDELNHASMIEGIRHSRA------------EKRIFRHNDPADLERKLSDLDPHRPKLVAFESVY 187 (406)
T ss_pred HHHHHhhcCCCCCEEEEccchhHHHHHHHHHcCC------------eEEEeCCCCHHHHHHHHHhccCCCCEEEEEcCCC
Confidence 34555554 788888888888887777776662 4555554321111111111 1356788888999
Q ss_pred CccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCC-CcceEEEecccccccccccceeeeecccc
Q 045431 216 NPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGA-KEVAIETSSFSKYAGFTGVRLGWTVIPKE 294 (433)
Q Consensus 216 nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~-~~~vi~i~S~sK~~~~~G~r~G~l~~~~~ 294 (433)
||+|.+.+ +++|.++|++|++++|+||+|+...++.....+....+. ++..|+++||||.+|++| ||++++++
T Consensus 188 ~~~G~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~~G---G~~~~~~~ 261 (406)
T PRK13393 188 SMDGDIAP---IAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGVMG---GYITGSAA 261 (406)
T ss_pred CCCCchhC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhcccC---ceeeCCHH
Confidence 99999998 888889999999999999999843333222222222222 223577899999999878 99998887
Q ss_pred ccccCCcchhHHHHHHHhh--ccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEE
Q 045431 295 LLFSDGFPVAKDFNRIVCT--CFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYV 372 (433)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~ 372 (433)
++ +.+...... ...+.+++.+.++.++++..... ...+.+++++++++.+.|++.|+.+..+ .++++
T Consensus 262 ~~--------~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~~~--~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~i~ 330 (406)
T PRK13393 262 LC--------DFIRSFASGFIFTTSLPPAVAAGALASVRHLKAS--SAERERHQDRVARLRARLDKAGIPHLPN-PSHIV 330 (406)
T ss_pred HH--------HHHHHhCcCceecCccCHHHHHHHHHHHHHHhhC--HHHHHHHHHHHHHHHHHHHHcCCCcCCC-CCCeE
Confidence 74 445443322 12345666677777777532111 2234667888999999999888876654 55566
Q ss_pred EEECCCC-ChHHHHHHHHHcCCeEecCCCCCC-CCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 373 WVQFPGR-SSWDVFSEILEKTHVVTTPGSGFG-PGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 373 ~~~~~~~-~~~~~~~~l~~~~gi~v~~g~~f~-~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
.+.++.. ...++...+++++||.+.++.... +.+.+++||+. +.+++|+++++++|++++
T Consensus 331 ~v~~~~~~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~edid~l~~~l~~~~ 394 (406)
T PRK13393 331 PVMVGDPVLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEHLVQALSEIW 394 (406)
T ss_pred EEEeCCHHHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 6655431 335666677665699998865322 23457899995 569999999999998874
|
|
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.4e-26 Score=218.68 Aligned_cols=333 Identities=17% Similarity=0.178 Sum_probs=220.5
Q ss_pred ecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCC----CCCCHHHHHHHHHHHhccCCCC-CCcEEEcCChHHHHHH-
Q 045431 68 LGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA----EQGEKPLRAAIASTFYKDLGIE-EGDIFVSDGAKCDISR- 141 (433)
Q Consensus 68 l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~----~~g~~~lr~~la~~l~~~~~~~-~~~i~~~~G~~~al~~- 141 (433)
|..+..++++|+.+.+++.+.+...........|.. ..+..++|+.+++++ +++ +++|++|+|+++++.+
T Consensus 3 ld~a~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~~~~~v~~~~g~t~al~~~ 78 (376)
T TIGR01977 3 FDNAATTYPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLF----NAPSSAHVVFTNNATTALNIA 78 (376)
T ss_pred ccCcccCCCCCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHh----CcCCCCeEEEeCCHHHHHHHH
Confidence 455555677889999999998875421122223422 256678899999987 664 4589999999999987
Q ss_pred HHHhcCCCCEEEEeCCCChhhhhhHH----HhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEEEEcCC
Q 045431 142 LQIVFGSNVTMAVQDPSYPAYVDSSV----IMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIFFCSP 214 (433)
Q Consensus 142 l~~l~~~gd~Vl~~~p~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~~p 214 (433)
+.+++++||+|++.+++|+.+...+. ..| .+++.++.+.++..+.+ +++ .++++++++++|
T Consensus 79 ~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~~~~~~~~v~~~~~ 146 (376)
T TIGR01977 79 LKGLLKEGDHVITTPMEHNSVARPLECLKEQIG------------VEITIVKCDNEGLISPERIKRAIKTNTKLIVVSHA 146 (376)
T ss_pred HHhccCCCCEEEECcchhhHHHHHHHHHHHHcC------------cEEEEEecCCCCCcCHHHHHHhcCCCCeEEEEECC
Confidence 57778999999999999988754433 335 36777777643322221 221 357899999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecccc
Q 045431 215 NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKE 294 (433)
Q Consensus 215 ~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~ 294 (433)
+||||.+++ +++|.++|+++|+++|+|++++.... +..+.. .+..+++.|++|+++.| -.+|++++++.
T Consensus 147 ~n~tG~~~~---~~~i~~l~~~~~~~livD~a~~~g~~---~~~~~~----~~~D~~~~s~~K~l~~p-~g~g~l~~~~~ 215 (376)
T TIGR01977 147 SNVTGTILP---IEEIGELAQENGIFFILDAAQTAGVI---PIDMTE----LAIDMLAFTGHKGLLGP-QGTGGLYIREG 215 (376)
T ss_pred CCCccccCC---HHHHHHHHHHcCCEEEEEhhhccCcc---CCCchh----cCCCEEEecccccccCC-CCceEEEEcCC
Confidence 999999999 67788899999999999999984221 222221 12348889999988533 23677766655
Q ss_pred ccccCCcc----h-h------HHH-HHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CC
Q 045431 295 LLFSDGFP----V-A------KDF-NRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GF 361 (433)
Q Consensus 295 ~~~~~~~~----~-~------~~~-~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 361 (433)
........ . . ..+ .++.. .+.+.....+..++++......++.++++.++..+.+.+.|++. |+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~---~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~~~ 292 (376)
T TIGR01977 216 IKLKPLKSGGTGSHSALIDQPSELPDRFES---GTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREINKV 292 (376)
T ss_pred cCcCceecCCCccccccccccccchhhccC---CCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 41000000 0 0 000 11111 12333333333334432111234677788888999999999876 77
Q ss_pred eeecCC----CccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCC--------CCCCeEEEee--ccChhHHHHHHHH
Q 045431 362 KVYGGK----NAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGP--------GGEGFIRVSA--FGHRGNVLEACKR 427 (433)
Q Consensus 362 ~~~~~~----~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~--------~~~~~iRi~~--~~~~~~l~~~l~~ 427 (433)
.+..+. .+..+++.+++.+..++...|.+++||.+.+|..+.. ...+.||+++ +++++|++.++++
T Consensus 293 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~~~~~ 372 (376)
T TIGR01977 293 KIYGPADPANRVGVVSFTVEGIDSEEVADILDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEKLLEA 372 (376)
T ss_pred EEeCCCCccccCCeEEEEECCCCHHHHHHHHhccCCEEEEcccccchHHHHHhCCCCCCeEEEecCCCCCHHHHHHHHHH
Confidence 776431 3567888888766667777766656999999886642 2457899995 5699999999999
Q ss_pred HHH
Q 045431 428 FKH 430 (433)
Q Consensus 428 l~~ 430 (433)
|++
T Consensus 373 l~~ 375 (376)
T TIGR01977 373 LSE 375 (376)
T ss_pred Hhh
Confidence 976
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=218.53 Aligned_cols=331 Identities=15% Similarity=0.172 Sum_probs=217.3
Q ss_pred eEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCC----CHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHH
Q 045431 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQG----EKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDIS 140 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g----~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~ 140 (433)
.+.|..+.+. ++|+.+.+++.+.+..... .....|....+ ..++|+.+++++ ++++++|++++|+++++.
T Consensus 18 ~~yl~~~~~~-~~p~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~ia~~~----~~~~~~v~~~~~~t~~l~ 91 (397)
T TIGR01976 18 RVFFDNPAGT-QIPQSVADAVSAALTRSNA-NRGGAYESSRRADQVVDDAREAVADLL----NADPPEVVFGANATSLTF 91 (397)
T ss_pred eEEecCCccC-CCCHHHHHHHHHHHHhcCC-CCCCCchHHHHHHHHHHHHHHHHHHHc----CCCCCeEEEeCCHHHHHH
Confidence 6888877664 5788899999988864321 11123533333 357888888876 777778999999999987
Q ss_pred H-HHH---hcCCCCEEEEeCCCChhhhhh----HHHhCCcccccccccccceEEEeecCccCCcccC---CCC--CCCcc
Q 045431 141 R-LQI---VFGSNVTMAVQDPSYPAYVDS----SVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD---LST--VARTD 207 (433)
Q Consensus 141 ~-l~~---l~~~gd~Vl~~~p~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~ 207 (433)
+ +.. .+++||+|++.+|+|++.... .+..| .+++.++.+.+++ ..+ +++ .++++
T Consensus 92 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g------------~~~~~~~~~~~~~-~~~~~~l~~~i~~~~~ 158 (397)
T TIGR01976 92 LLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERAG------------AKVKWARVDEATG-ELHPDDLASLLSPRTR 158 (397)
T ss_pred HHHHHHHhcCCCCCEEEEcCCchHhHHHHHHHHHHhcC------------CEEEEEeccccCC-CcCHHHHHHhcCCCce
Confidence 5 333 368999999999999776433 34455 4777777764221 222 222 35789
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccccccee
Q 045431 208 IIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLG 287 (433)
Q Consensus 208 ~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G 287 (433)
+|++++|+||||.+++ +++|.++|++||+++|+|++++.. ..+..+... +..+++.|++|++| .|+|
T Consensus 159 lv~i~~~~n~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~~---~~~~~~~~~----~~d~~~~s~~K~~g---~~~G 225 (397)
T TIGR01976 159 LVAVTAASNTLGSIVD---LAAITELVHAAGALVVVDAVHYAP---HGLIDVQAT----GADFLTCSAYKFFG---PHMG 225 (397)
T ss_pred EEEEeCCCCCCCccCC---HHHHHHHHHHcCCEEEEehhhhcc---ccCCCHHHc----CCCEEEEechhhcC---CceE
Confidence 9999999999999987 888899999999999999998521 112222222 22367789999885 3589
Q ss_pred eeeccccccccCCcchh-----HHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-----------hHHHHHHHHHHHHHHH
Q 045431 288 WTVIPKELLFSDGFPVA-----KDFNRIVCTCFNGASNISQAGGLACLSPEGF-----------KAVHEVIGFYKENTDI 351 (433)
Q Consensus 288 ~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-----------~~~~~~~~~~~~~~~~ 351 (433)
|++++++++..-.+... ....++...+.+.....+..++++.+...+. ..+++.+++..+.+++
T Consensus 226 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 305 (397)
T TIGR01976 226 ILWGRPELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEY 305 (397)
T ss_pred EEEEcHHHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHH
Confidence 99999887521110000 0001111111111122334445555543321 1256677778888889
Q ss_pred HHHHHhhc-CCeeecC----CCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCC---------CCCCCeEEEee--c
Q 045431 352 IVETFNSL-GFKVYGG----KNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFG---------PGGEGFIRVSA--F 415 (433)
Q Consensus 352 l~~~l~~~-g~~~~~~----~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~---------~~~~~~iRi~~--~ 415 (433)
+.+.|+++ ++.+..+ ..+.++.+.+++....++.+.|. ++||.+..|..|. +...++||+|+ +
T Consensus 306 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~gI~v~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 384 (397)
T TIGR01976 306 LLVGLSDLPGVTLYGVARLAARVPTVSFTVHGLPPQRVVRRLA-DQGIDAWAGHFYAVRLLRRLGLNDEGGVVRVGLAHY 384 (397)
T ss_pred HHHHHhcCCCEEEeCCCCccCCCceEEEEeCCcCHHHHHHHHH-HCCeEEEeCccchHHHHHHhCCCCCCCeEEEEeecc
Confidence 99999887 4777654 24567777777655666776665 4599999886653 12346899996 5
Q ss_pred cChhHHHHHHHHH
Q 045431 416 GHRGNVLEACKRF 428 (433)
Q Consensus 416 ~~~~~l~~~l~~l 428 (433)
++++|++++++.|
T Consensus 385 ~t~~di~~l~~~l 397 (397)
T TIGR01976 385 NTAEEVDRLLEAL 397 (397)
T ss_pred CCHHHHHHHHHhC
Confidence 6899999998764
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.6e-26 Score=218.64 Aligned_cols=341 Identities=13% Similarity=0.083 Sum_probs=215.2
Q ss_pred HhcCCCCceEEecCCC---CCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcC
Q 045431 57 MLKYPDAEVISLGIGD---TTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSD 133 (433)
Q Consensus 57 ~~~~~~~~~i~l~~g~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~ 133 (433)
....++..+|||..|. +--..+|.+.+++.+++.+... ..... . .+....+++.+.+..+ .+.+++++
T Consensus 34 ~~d~dG~~~iD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~---~~~~~---~-~~~~~~l~~~l~~~~~--~~~~~~~~ 104 (403)
T PRK05093 34 VWDQQGKEYIDFAGGIAVTALGHCHPALVKALKEQGEKLWH---ISNVF---T-NEPALRLAKKLIDATF--AERVFFAN 104 (403)
T ss_pred EEeCCCCEEEEcCcCHHhccCCCCCHHHHHHHHHHHHhcCc---ccCcc---C-CHHHHHHHHHHHhhCC--CCEEEEeC
Confidence 3445677899997762 2223789999999998875321 11110 1 1222344444433222 36888888
Q ss_pred ChHHHHHHHHHhc---------CCCCEEEEeCCCChhhhhhHHHh-CCcccccccccccceEEEeecCccCCcccCCCCC
Q 045431 134 GAKCDISRLQIVF---------GSNVTMAVQDPSYPAYVDSSVIM-GQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV 203 (433)
Q Consensus 134 G~~~al~~l~~l~---------~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (433)
+++++......++ ...+.|+..+-+|++.......+ +........+....+++.++.++...+...+ .
T Consensus 105 sGseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l--~ 182 (403)
T PRK05093 105 SGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPFNDLAAVKAVI--D 182 (403)
T ss_pred chHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCCCCHHHHHHHh--c
Confidence 8888877532222 12356777887777754322222 2110000011111133444443211111111 1
Q ss_pred CCccEEEEcCCCCccccCC--CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccc
Q 045431 204 ARTDIIFFCSPNNPTGAAA--TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGF 281 (433)
Q Consensus 204 ~~~~~i~l~~p~nPtG~~~--~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~ 281 (433)
+++++|++ +|.||+|.++ +.+.+++|+++|++||+++|+||+|.++.+.+.+.+.....-.+| +.||||.++
T Consensus 183 ~~~aaiii-ep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pd----i~s~sK~l~- 256 (403)
T PRK05093 183 DHTCAVVV-EPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTPD----ILTSAKALG- 256 (403)
T ss_pred CCeEEEEE-ecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCC----EEEeccccc-
Confidence 45666665 5988888765 889999999999999999999999998866664333222221233 569999998
Q ss_pred cccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcC-
Q 045431 282 TGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLG- 360 (433)
Q Consensus 282 ~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g- 360 (433)
+|+|+||++++++++ +.+.......+.+.+++.|.++.+.|+.... .+..+.++++++++.+.|++++
T Consensus 257 ~G~rig~vv~~~~i~--------~~l~~~~~~~t~~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~~~~ 325 (403)
T PRK05093 257 GGFPIGAMLTTAEIA--------SHFKVGTHGSTYGGNPLACAVAEAVFDIINT---PEVLEGVKARRQRFVDGLQKINQ 325 (403)
T ss_pred CCcceEEEEEcHHHH--------hhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999998885 3343323334556789999988887653211 3456788899999999998763
Q ss_pred ---CeeecCCCccEEEEECCCC---ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 361 ---FKVYGGKNAPYVWVQFPGR---SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 361 ---~~~~~~~~g~~~~~~~~~~---~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
+....+..|.++|+.++.. ...++...++++ ||.+.|+ +.+++|++ +..+++++++++++|++++
T Consensus 326 ~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~~~l~~~-Gv~v~~~------g~~~lRl~~~~~~~~~~i~~~~~~l~~~l 398 (403)
T PRK05093 326 KYGVFSEIRGMGLLIGAELKPQYKGRARDFLNAAAEE-GVMVLVA------GPDVLRFAPSLVIEEADIDEGLARFEKAV 398 (403)
T ss_pred hCCCeEeEeeCceEEEEEecCcchhHHHHHHHHHHHC-CeEEecC------CCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 2222334688999998632 345677776665 9999874 24789996 4558999999999999875
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-25 Score=213.93 Aligned_cols=319 Identities=13% Similarity=0.137 Sum_probs=206.6
Q ss_pred CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCC--cEEEcCChHHHHHH-HHHhcCCCCE
Q 045431 75 EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEG--DIFVSDGAKCDISR-LQIVFGSNVT 151 (433)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~--~i~~~~G~~~al~~-l~~l~~~gd~ 151 (433)
..+++.+.+++..... .....|. .-..++|+.+++++ +++++ .|++++|+++++.. +..++.+||+
T Consensus 8 ~~~~~~~~~~~~~~~~-----~~~~~~~--~~~~~~~~~la~~~----~~~~~~~~i~~~~~gt~~l~~~~~~~~~~~~~ 76 (355)
T TIGR03301 8 LSTSATVRDAMLVDWC-----HWDSEFN--DVTDQVRDRLLALA----GGDDNHTCVLLQGSGTFAVEATIGSLVPRDGK 76 (355)
T ss_pred CCCCHHHHHHhhhhcc-----CCCHHHH--HHHHHHHHHHHHHh----cCCCCCcEEEEeCCcHHHHHHHHHhccCCCCe
Confidence 3466777777666221 1112342 34567777777776 77654 57789999999987 5777888888
Q ss_pred EEEeCCCChh--hhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC----CCCccEEEEcCCCCccccCCCH
Q 045431 152 MAVQDPSYPA--YVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST----VARTDIIFFCSPNNPTGAAATR 224 (433)
Q Consensus 152 Vl~~~p~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~i~l~~p~nPtG~~~~~ 224 (433)
|++.++.+.+ +...++..| .+++.++.+.+...+.+ +++ .++++++++++++||||+..+
T Consensus 77 vi~~~~~~~~~~~~~~a~~~g------------~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~- 143 (355)
T TIGR03301 77 LLVLINGAYGERLAKICEYLG------------IPHTDLNFSEYEPPDLNRIEEALAADPDITHVATVHHETTTGILNP- 143 (355)
T ss_pred EEEECCCchhhHHHHHHHHcC------------CceEEEecCCCCCCCHHHHHHHHHhCCCceEEEEEecCCcccchhH-
Confidence 7776665544 345556667 36777776543332222 221 245667778899999999887
Q ss_pred HHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccc-cccccceeeeeccccccccCCc--
Q 045431 225 EQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYA-GFTGVRLGWTVIPKELLFSDGF-- 301 (433)
Q Consensus 225 ~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~-~~~G~r~G~l~~~~~~~~~~~~-- 301 (433)
+++|+++|++|++++|+|++++.. ..+.++... +..++++|++|++ |++| +||++++++++..-..
T Consensus 144 --~~~i~~l~~~~~~~livD~~~s~g---~~~~~~~~~----~~d~~~~s~~K~l~~~~G--~g~~~~~~~~~~~~~~~~ 212 (355)
T TIGR03301 144 --LEAIAKVARSHGAVLIVDAMSSFG---AIPIDIEEL----DVDALIASANKCLEGVPG--FGFVIARRDLLEASAGNA 212 (355)
T ss_pred --HHHHHHHHHHcCCEEEEEeccccC---Ccccchhhc----CccEEEecCCcccccCCc--eeEEEECHHHHHHhhCCC
Confidence 789999999999999999987632 123333332 3348899999987 4445 7999999887521000
Q ss_pred -----chhHHHHHHH--hhccCCCcHHHHHHHHHhcCcCChh-HHHHHHHHHHHHHHHHHHHHhhcCCeeecC---CCcc
Q 045431 302 -----PVAKDFNRIV--CTCFNGASNISQAGGLACLSPEGFK-AVHEVIGFYKENTDIIVETFNSLGFKVYGG---KNAP 370 (433)
Q Consensus 302 -----~~~~~~~~~~--~~~~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~---~~g~ 370 (433)
.....+.... .....+++...+.++.+++...... ++++..++++++++++.+.|+++|+.+..+ ..+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~ 292 (355)
T TIGR03301 213 RSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRALGFQPLLPERWQSPI 292 (355)
T ss_pred CCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCCc
Confidence 0000000000 1112345666666555555421111 257777888999999999999888876543 2345
Q ss_pred EEEEECCC---CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 371 YVWVQFPG---RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 371 ~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
++|+.++. .+..++...+. ++||.+.+|..+. .+++||++ +.+.++++++++.|++++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~l~-~~gi~i~~~~~~~---~~~iRis~~~~~~~~~i~~~~~~l~~~~ 355 (355)
T TIGR03301 293 IVSFLYPDDPDFDFDDFYQELK-ERGFVIYPGKLTL---ADTFRIGTIGEIDAADIERLLEAIKDAL 355 (355)
T ss_pred EEEEECCCCCcchHHHHHHHHH-HCCEEEECCcccc---ccEEEEecCCCCCHHHHHHHHHHHHhhC
Confidence 78898874 23345666654 5599999986543 26899996 348999999999998864
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-25 Score=213.70 Aligned_cols=339 Identities=10% Similarity=0.066 Sum_probs=222.1
Q ss_pred hcCCCCceEEecCCCC---CCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCC
Q 045431 58 LKYPDAEVISLGIGDT---TEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDG 134 (433)
Q Consensus 58 ~~~~~~~~i~l~~g~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G 134 (433)
...+++..+|+..|.. --..++.+.+++.+++.+.. . . ......+++..+++++.+..+ .+.++++++
T Consensus 24 ~d~~G~~~lD~~s~~~~~~lG~~~p~v~~a~~~~~~~~~---~---~-~~~~~~~~~~~la~~l~~~~~--~~~~~~~~s 94 (377)
T PRK02936 24 TDNNGKTYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDIW---H---V-SNLFTNSLQEEVASLLAENSA--GDLVFFCNS 94 (377)
T ss_pred EeCCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcc---c---c-ccccCCHHHHHHHHHHHhcCC--CCEEEEeCC
Confidence 3456778999988862 22378999999999987532 1 1 123457899999999865322 358999999
Q ss_pred hHHHHHHHHHh---cCCCCEEEEeCCCChhhhhh-HHHhCCcccccccccccceEEEeecCccCCcccCCCCCCCccEEE
Q 045431 135 AKCDISRLQIV---FGSNVTMAVQDPSYPAYVDS-SVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIF 210 (433)
Q Consensus 135 ~~~al~~l~~l---~~~gd~Vl~~~p~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 210 (433)
+++++.....+ ....++|++.+++|++.... ....+.......+......+..++.++...+...+ .+++++|+
T Consensus 95 G~~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~--~~~~~~ii 172 (377)
T PRK02936 95 GAEANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVM--NEEVAAVM 172 (377)
T ss_pred cHHHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCCCHHHHHHhc--cCCeEEEE
Confidence 99998863332 23346799999999865432 22222211100011111123334432211111111 24678877
Q ss_pred EcCCCCccccC-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeee
Q 045431 211 FCSPNNPTGAA-ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWT 289 (433)
Q Consensus 211 l~~p~nPtG~~-~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l 289 (433)
+..+++++|.. .+++.+++|.++|++||+++|+||+|.++.+.+.+.+.......+| +.||||.++ +|+|+||+
T Consensus 173 ~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~~d----i~t~sK~l~-~G~~ig~v 247 (377)
T PRK02936 173 LEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDPD----IVTVAKGLG-NGIPVGAM 247 (377)
T ss_pred EecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCCCCc----EEEEccccc-CCCccEEE
Confidence 77778998876 5889999999999999999999999998766654333222321233 237999998 99999999
Q ss_pred eccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc--CCee---e
Q 045431 290 VIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL--GFKV---Y 364 (433)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g~~~---~ 364 (433)
++++++. +.+.......+.+.++++|.++.++++.... +...++++++.+.+.+.|++. ++.. .
T Consensus 248 ~~~~~~~--------~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v 316 (377)
T PRK02936 248 IGKKELG--------TAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQ---PSFLEEVQEKGEYFLQKLQEELEHLECVKNI 316 (377)
T ss_pred EEcHHHH--------hhccCCCCCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhhCCcEEeE
Confidence 9998874 4443333334556799999999999874311 234466667777777777653 2222 2
Q ss_pred cCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 365 GGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 365 ~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
. ..|+++|+.++.. ...+... +.++||.+.|+ +.+++||+ +..+++++++++++|++++
T Consensus 317 ~-~~g~~~~i~~~~~-~~~~~~~-l~~~gv~v~~~------g~~~lRi~p~~~~~~~~i~~~i~~l~~~~ 377 (377)
T PRK02936 317 R-GKGLMIGIECTEE-VAPVIEQ-LREEGLLVLSA------GPNVIRLLPPLVVTKEELDQAVYLLKKVL 377 (377)
T ss_pred e-ecceEEEEEecch-HHHHHHH-HHHCCeEEecC------CCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence 2 3578999999742 4445554 45569999874 24789999 4679999999999998864
|
|
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.95 E-value=7e-26 Score=218.13 Aligned_cols=321 Identities=14% Similarity=0.145 Sum_probs=210.4
Q ss_pred CChHHHHHHHHHHHhhcccCC--CCCCCC--CCCCCHHHHHHHHHHHhccCCCC-CCcEEEcCChHHHHHH-HHHhcC--
Q 045431 76 PIPEVITSALAKRSYALSTQE--GYSGYG--AEQGEKPLRAAIASTFYKDLGIE-EGDIFVSDGAKCDISR-LQIVFG-- 147 (433)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~--~~~~Y~--~~~g~~~lr~~la~~l~~~~~~~-~~~i~~~~G~~~al~~-l~~l~~-- 147 (433)
++|+.+.+++.+.+....... +...++ ......++|+.+++++ +++ +++|++|+|+++++.+ +.++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~~~~~v~~~~g~t~a~~~~~~~l~~~~ 85 (373)
T cd06453 10 QKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFI----NAPSPDEIIFTRNTTEAINLVAYGLGRAN 85 (373)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHh----CCCCCCeEEEeCCHHHHHHHHHHHhhhcC
Confidence 467888889988875432101 111111 1234567888888887 776 7899999999999987 567766
Q ss_pred -CCCEEEEeCCCChhhhhh----HHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEEEEcCCCCccc
Q 045431 148 -SNVTMAVQDPSYPAYVDS----SVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIFFCSPNNPTG 219 (433)
Q Consensus 148 -~gd~Vl~~~p~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~~p~nPtG 219 (433)
+||+|++++++|++.... .+..| .+++.++.+.++....+ +++ .+++++|++++|+||||
T Consensus 86 ~~g~~vl~~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG 153 (373)
T cd06453 86 KPGDEIVTSVMEHHSNIVPWQQLAERTG------------AKLKVVPVDDDGQLDLEALEKLLTERTKLVAVTHVSNVLG 153 (373)
T ss_pred CCCCEEEECcchhHHHHHHHHHHHhhcC------------cEEEEeecCCCCCcCHHHHHHHhcCCceEEEEeCcccccC
Confidence 899999999999885433 23445 47788887643322222 221 35789999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccC
Q 045431 220 AAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSD 299 (433)
Q Consensus 220 ~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~ 299 (433)
.+++ +++|.++|++||++|++|++|+.... +.++... +..+++.|++|+++ + .++||++++++++..-
T Consensus 154 ~~~~---~~~i~~~~~~~~~~li~D~a~~~~~~---~~~~~~~----~~d~~~~s~~K~~~-~-~g~g~~~~~~~~~~~~ 221 (373)
T cd06453 154 TINP---VKEIGEIAHEAGVPVLVDGAQSAGHM---PVDVQDL----GCDFLAFSGHKMLG-P-TGIGVLYGKEELLEEM 221 (373)
T ss_pred CcCC---HHHHHHHHHHcCCEEEEEhhhhcCce---eeecccc----CCCEEEeccccccC-C-CCcEEEEEchHHhhcC
Confidence 9998 67888889999999999999873221 2222222 12367789999997 3 5689999998875321
Q ss_pred CcchhH-----H----HHHHH----hhccCCCcHHHH---HHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCe
Q 045431 300 GFPVAK-----D----FNRIV----CTCFNGASNISQ---AGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFK 362 (433)
Q Consensus 300 ~~~~~~-----~----~~~~~----~~~~~~~~~~~q---~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~ 362 (433)
.+.... . ..... ......++.... .+++..+...+ ++.++++.++.++++.+.|+++ +++
T Consensus 222 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g---~~~~~~~~~~~~~~l~~~l~~~~~~~ 298 (373)
T cd06453 222 PPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIG---MEAIAAHEHELTAYALERLSEIPGVR 298 (373)
T ss_pred CCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence 110000 0 00000 000112333333 33334443333 4777788888899999999888 677
Q ss_pred eecC--CCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCC------CCCCeEEEee--ccChhHHHHHHHHH
Q 045431 363 VYGG--KNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGP------GGEGFIRVSA--FGHRGNVLEACKRF 428 (433)
Q Consensus 363 ~~~~--~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~------~~~~~iRi~~--~~~~~~l~~~l~~l 428 (433)
+..+ ..+.++++.+++.+..++.+.+.+ +||.+.+|..+.. ...+++|+++ +++.+|++++++.|
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~-~gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 299 VYGDAEDRAGVVSFNLEGIHPHDVATILDQ-YGIAVRAGHHCAQPLMRRLGVPGTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred EeCCccccCCeEEEEECCcCHHHHHHHHHH-CCEEeccCccchhHHHHHhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence 7642 235677888876566666666654 6999988875431 2257899997 46999999998864
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-25 Score=213.65 Aligned_cols=332 Identities=13% Similarity=0.121 Sum_probs=221.3
Q ss_pred EEecCCCC-CCCChHHHHHHHHHHHhhcccCCC--CCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHH
Q 045431 66 ISLGIGDT-TEPIPEVITSALAKRSYALSTQEG--YSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRL 142 (433)
Q Consensus 66 i~l~~g~~-~~~~~~~~~~a~~~~~~~~~~~~~--~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l 142 (433)
++|+++++ .+...+.+.+++.+++.+++.... ...|+...+..+|++++|+++ +.+ +.+++++|.++.+.++
T Consensus 1 ~~f~s~dyLgl~~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~----g~e-~al~~~sG~~a~~~~i 75 (392)
T PLN03227 1 LNFATHDFLSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFL----GTE-SAILYSDGASTTSSTV 75 (392)
T ss_pred CCCcCcCccCCCCCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHh----CCC-cEEEecCcHHHHHHHH
Confidence 36666665 466788999999999987543222 224777778999999999997 654 7899999999999888
Q ss_pred HHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC---CC---------CCCCccEEE
Q 045431 143 QIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD---LS---------TVARTDIIF 210 (433)
Q Consensus 143 ~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---------~~~~~~~i~ 210 (433)
..++++||.|+++++.|+++...+...+ .+++.++..+..++... +. ..+++++|+
T Consensus 76 ~~l~~~GD~Vl~~~~~h~s~~~~~~l~~------------~~~~~~~~~d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi 143 (392)
T PLN03227 76 AAFAKRGDLLVVDRGVNEALLVGVSLSR------------ANVRWFRHNDMKDLRRVLEQVRAQDVALKRKPTDQRRFLV 143 (392)
T ss_pred HHhCCCCCEEEEeccccHHHHHHHHHcC------------CeEEEeCCCCHHHHHHHHHHhhhhccccccccCCCcEEEE
Confidence 8899999999999999999887776555 35555555422221111 11 113577788
Q ss_pred EcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccc---cCCCCcceEEEecccccccccccce
Q 045431 211 FCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFE---IPGAKEVAIETSSFSKYAGFTGVRL 286 (433)
Q Consensus 211 l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~---~~~~~~~vi~i~S~sK~~~~~G~r~ 286 (433)
+.+++||+|.+.+ +++|.++|++||+++|+||+|+ +...+. .....+ +....+..+++.|+||.+|.. .
T Consensus 144 ~E~v~~~~G~i~~---l~~i~~l~~~~g~~livDe~~~-~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g~~---g 216 (392)
T PLN03227 144 VEGLYKNTGTLAP---LKELVALKEEFHYRLILDESFS-FGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFGSV---G 216 (392)
T ss_pred EcCCcCCCCcccC---HHHHHHHHHHcCCEEEEECccc-ccccCCCCCcHHHHcCCCCCCCceEEEeechhhhhcc---C
Confidence 7788999999999 7789999999999999999998 333221 112222 111123458888999987644 4
Q ss_pred eeeeccccccccCCcchhHHHHHHHhhccCCC--cHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeee
Q 045431 287 GWTVIPKELLFSDGFPVAKDFNRIVCTCFNGA--SNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVY 364 (433)
Q Consensus 287 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 364 (433)
|+++++++++ +.+.........+. +++.+.++.+.+..... .+++.++++++.+++.+.|++.++...
T Consensus 217 g~v~~~~~~~--------~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~~~--~~~~~~~l~~~~~~l~~~L~~~~~~~~ 286 (392)
T PLN03227 217 GMTVGSEEVV--------DHQRLSGSGYCFSASAPPFLAKADATATAGELA--GPQLLNRLHDSIANLYSTLTNSSHPYA 286 (392)
T ss_pred cEEecCHHHH--------HHHHHhCcCccccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 8888887764 33332222222223 35556666655542211 256778889999999999986543321
Q ss_pred ----------cCCCccEEEEECCCCC----------hHHHHHHHHHcCCeEecCCCC-----CCCCCCCeEEEee--ccC
Q 045431 365 ----------GGKNAPYVWVQFPGRS----------SWDVFSEILEKTHVVTTPGSG-----FGPGGEGFIRVSA--FGH 417 (433)
Q Consensus 365 ----------~~~~g~~~~~~~~~~~----------~~~~~~~l~~~~gi~v~~g~~-----f~~~~~~~iRi~~--~~~ 417 (433)
....++.+.+.+.+.. ..++...+++ +|+.+.+... +..-.+..+|+++ ..+
T Consensus 287 ~~~rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gi~~~~~~~~~~~~~~~~P~~~iR~~~~~~~t 365 (392)
T PLN03227 287 LKLRNRLVITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLS-EGVAVVSTGGHVKKFLQLVPPPCLRVVANASHT 365 (392)
T ss_pred cccccccccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHH-CCCEEEecccccCCcCCCCCCceEEEEecCCCC
Confidence 1224566777775311 1245555554 5999865211 1112256799996 348
Q ss_pred hhHHHHHHHHHHHhh
Q 045431 418 RGNVLEACKRFKHLY 432 (433)
Q Consensus 418 ~~~l~~~l~~l~~~l 432 (433)
++|++++++.|++++
T Consensus 366 ~eei~~~~~~l~~~~ 380 (392)
T PLN03227 366 REDIDKLLTVLGEAV 380 (392)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999875
|
|
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-25 Score=213.26 Aligned_cols=296 Identities=11% Similarity=0.069 Sum_probs=200.2
Q ss_pred CHHHHHHHHHHHhccCCCCC--CcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhh--hhhHHHhCCcccccccccc
Q 045431 107 EKPLRAAIASTFYKDLGIEE--GDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAY--VDSSVIMGQTGEFQKDAEK 181 (433)
Q Consensus 107 ~~~lr~~la~~l~~~~~~~~--~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~--~~~~~~~g~~~~~~~~~~~ 181 (433)
..++|+.+++++ ++++ ++|++|+|+++++++ +.+++.+||.+++..+++++. ...++..|
T Consensus 37 ~~~~r~~la~l~----~~~~~~~~i~~t~~~t~al~~~~~~l~~~~~~vlv~~~~~~~~~~~~~a~~~g----------- 101 (363)
T TIGR02326 37 VEQIRQQLLALA----TAEEGYTSVLLQGSGTFAVEAVIGSAVPKDGKLLVVINGAYGARIVQIAEYLG----------- 101 (363)
T ss_pred HHHHHHHHHHHh----CCCCCceEEEEcCCCHHHHHHHHHhcCCCCCeEEEEeCChhhHHHHHHHHHcC-----------
Confidence 455566677765 7765 379999999999997 577888998888877766554 34456666
Q ss_pred cceEEEeecCccCCcccC-CC----CCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCC
Q 045431 182 YGKIEYMRCTAENGFFPD-LS----TVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNP 256 (433)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~-~~----~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~ 256 (433)
.+++.++.+++.....+ ++ ..++++++.+++++||||+.++ +++|.++|++||+++|+|++++. +..+
T Consensus 102 -~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~---i~~I~~l~~~~g~~livD~~~~~---g~~~ 174 (363)
T TIGR02326 102 -IPHHVVDTGEVEPPDVVEVEAILAADPAITHIALVHCETTTGILNP---IEAVAKLAHRHGKVTIVDAMSSF---GGIP 174 (363)
T ss_pred -CceEEEeCCCCCCCCHHHHHHHHhhCCCccEEEEEeecCCccccCc---HHHHHHHHHHcCCEEEEEccccc---cCcc
Confidence 47777777654333322 21 2245677888899999999998 78999999999999999998762 2224
Q ss_pred CcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcch-------hHHHHHHH---hhccCCCcHHHHHHH
Q 045431 257 RSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPV-------AKDFNRIV---CTCFNGASNISQAGG 326 (433)
Q Consensus 257 ~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~-------~~~~~~~~---~~~~~~~~~~~q~~~ 326 (433)
.++..++ ..++++|++|+++ ++.++||++++++.+.+..... ...+.... .....+.+.+.+.++
T Consensus 175 ~~~~~~~----~D~~~~s~~K~l~-~p~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al 249 (363)
T TIGR02326 175 IDIAELH----IDYLISSANKCIQ-GVPGFGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAF 249 (363)
T ss_pred cchhhcC----ccEEEecCccccc-cCCcceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHH
Confidence 4444432 2388899999884 3334899999988753211000 00011110 001123566666665
Q ss_pred HHhcCcCChh-HHHHHHHHHHHHHHHHHHHHhhcCCeeecC---CCccEEEEECCC---CChHHHHHHHHHcCCeEecCC
Q 045431 327 LACLSPEGFK-AVHEVIGFYKENTDIIVETFNSLGFKVYGG---KNAPYVWVQFPG---RSSWDVFSEILEKTHVVTTPG 399 (433)
Q Consensus 327 ~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~---~~g~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g 399 (433)
.++++..... .+++.+++++++++++.+.|+++|+....+ ..+...|+.++. .+..++.+.+ +++||.+.||
T Consensus 250 ~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L-~~~gi~v~~g 328 (363)
T TIGR02326 250 AQALLELEKEGGVAARHQRYQQNQKTLVAGMRALGFEPLLDDEIQSPIITSFYSPEDPDYRFADFYQRL-KEQGFVIYPG 328 (363)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcCCeeccCcccCCceEEEEECCCCCCCCHHHHHHHH-HHCCEEEECC
Confidence 5555422111 256788999999999999999888877543 234567888874 3445666665 4559999999
Q ss_pred CCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhhC
Q 045431 400 SGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 400 ~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l~ 433 (433)
..+ ..++||+++ +.+.+++++++++|++++.
T Consensus 329 ~~~---~~~~iRi~~~~~~~~edv~~~l~~l~~~l~ 361 (363)
T TIGR02326 329 KVS---QVDCFRIGNIGEVDAADITRLLTAIGKAMY 361 (363)
T ss_pred cCC---CCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 765 246899995 3589999999999998863
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-25 Score=218.95 Aligned_cols=337 Identities=12% Similarity=0.125 Sum_probs=217.6
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCC--CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChH-HHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA--EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAK-CDI 139 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~-~al 139 (433)
..+++++.+.++++.|+.+.++..+. . .. ..+..|.+ ..|.+++++++++++.+.++++.++++++++++ ++.
T Consensus 20 ~~~~~l~~g~~~~~~p~~~~~~~~~~-~-~~--~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~ 95 (398)
T cd00613 20 QSMSFLGSGTYKHNPPAVIKRNILEN-E-FY--TAYTPYQPEISQGRLQALFELQTMLCELTGMDVANASLQDEATAAAE 95 (398)
T ss_pred cCcccccccccCCcCcHHHHHHhccc-c-Cc--ccCCCCChhhhhhHHHHHHHHHHHHHHHHCCCccceeccCchHHHHH
Confidence 35799999999988888888776665 1 10 12222333 689999999999999987777776787777544 454
Q ss_pred HHH-HHhcCC--CCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEEEEcC
Q 045431 140 SRL-QIVFGS--NVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIFFCS 213 (433)
Q Consensus 140 ~~l-~~l~~~--gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~~ 213 (433)
.++ ..++.+ ||+|++++|.|+.+...+..++.... .+++.++.+++.....+ +++ .+++++|++++
T Consensus 96 ~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g--------~~~~~v~~~~~~~~d~~~l~~~i~~~t~~viv~~ 167 (398)
T cd00613 96 AAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLG--------IEVVEVPSDEGGTVDLEALKEEVSEEVAALMVQY 167 (398)
T ss_pred HHHHHHHhcccCCCEEEEcCccCcchHHHHHHhcccCC--------cEEEEeccCCCCCcCHHHHHHhcCCCeEEEEEEC
Confidence 444 445565 99999999999999888887773211 26677776543211111 222 35789999888
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccc----ccceeee
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFT----GVRLGWT 289 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~----G~r~G~l 289 (433)
|+ |||.+. +.+++|.++|++||+++|+|+++...... ..... .+..++++|+||++ +| |+++||+
T Consensus 168 ~~-~~G~~~--~~l~~i~~la~~~g~~livD~~~~~~~~~---~~~~~----~~~d~~~~s~~K~~-~p~g~Ggp~~g~l 236 (398)
T cd00613 168 PN-TLGVFE--DLIKEIADIAHSAGALVYVDGDNLNLTGL---KPPGE----YGADIVVGNLQKTG-VPHGGGGPGAGFF 236 (398)
T ss_pred CC-CCceec--chHHHHHHHHHhcCCEEEEEeccccccCC---CChHH----cCCCEEEeeccccC-CCCCCCCCceeEE
Confidence 85 899983 45699999999999999999987642211 11111 12358999999998 45 7899999
Q ss_pred eccccccccCCcchh----------------H---HHHH---HHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHH
Q 045431 290 VIPKELLFSDGFPVA----------------K---DFNR---IVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKE 347 (433)
Q Consensus 290 ~~~~~~~~~~~~~~~----------------~---~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 347 (433)
+++++++........ . ...+ .......+.....|.+ ...+.......++++++++++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a-~~~l~~~~~~g~~~~~~~~~~ 315 (398)
T cd00613 237 AVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMA-AMYIVYLGPEGLKEIAERAHL 315 (398)
T ss_pred EEhhhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHH-HHHHHHhCHHHHHHHHHHHHH
Confidence 998877522100000 0 0000 0011111122333333 333332333457888999999
Q ss_pred HHHHHHHHHhhcCCeeecCCCccE--EEEECCC---CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe--eccChhH
Q 045431 348 NTDIIVETFNSLGFKVYGGKNAPY--VWVQFPG---RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS--AFGHRGN 420 (433)
Q Consensus 348 ~~~~l~~~l~~~g~~~~~~~~g~~--~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~~~ 420 (433)
+++++.+.|++++.... +.+..+ ++++++. ....++...|++ +||.+.... +...+.+|++ ++++++|
T Consensus 316 ~~~~l~~~L~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~L~~-~gi~~~~~~---~~~~~~lRis~~~~~t~ed 390 (398)
T cd00613 316 NANYLAKRLKEVGGVLP-FNGPFFHEFVLRLPPLYGIRAEDLAKALID-GGFHAPTMY---LPVDGTLMIEPTETETKEE 390 (398)
T ss_pred HHHHHHHHHHhcCCccc-CCCCeeEEEEEEcCCcchHHHHHHHHhhhh-cCccccccc---cCCCCeEEEEcCCCCCHHH
Confidence 99999999998754332 223322 5777763 234566666655 488764321 2345789999 4779999
Q ss_pred HHHHHHHH
Q 045431 421 VLEACKRF 428 (433)
Q Consensus 421 l~~~l~~l 428 (433)
++++++.|
T Consensus 391 id~~~~~L 398 (398)
T cd00613 391 LDALLEAL 398 (398)
T ss_pred HHHHHHhC
Confidence 99998864
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-25 Score=214.90 Aligned_cols=325 Identities=12% Similarity=0.058 Sum_probs=221.3
Q ss_pred CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCC-CcEEEcCChHHHHHH-HHHhcCCCCEE
Q 045431 75 EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEE-GDIFVSDGAKCDISR-LQIVFGSNVTM 152 (433)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~-~~i~~~~G~~~al~~-l~~l~~~gd~V 152 (433)
...|+.+.+++.+.. ..| ...+..++++++.+.+.+.++++. +.+++++|+++++.+ +..++++||+|
T Consensus 18 ~~~~~~V~~a~~~~~---------~~~-~~~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~~~Gd~V 87 (401)
T PLN02409 18 VNIPERVLRAMNRPN---------EDH-RSPAFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNTLSPGDKV 87 (401)
T ss_pred CCCCHHHHHHhcCCC---------CCC-CCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhcCCCCCEE
Confidence 356777777765422 112 234678888888888877667764 567888899999987 57788999999
Q ss_pred EEeCCCChhhh--hhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--C----CCccEEEEcCCCCccccCCC
Q 045431 153 AVQDPSYPAYV--DSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--V----ARTDIIFFCSPNNPTGAAAT 223 (433)
Q Consensus 153 l~~~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~----~~~~~i~l~~p~nPtG~~~~ 223 (433)
++.+++|++.. ..++..| .+++.++.+.+..+..+ +++ . ++++++++++++||||.+++
T Consensus 88 lv~~~~~~~~~~~~~~~~~g------------~~v~~v~~~~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~ 155 (401)
T PLN02409 88 VSFRIGQFSLLWIDQMQRLN------------FDVDVVESPWGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTND 155 (401)
T ss_pred EEeCCCchhHHHHHHHHHcC------------CceEEEECCCCCCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCC
Confidence 99999997653 4455556 47777777643332222 221 1 37899999999999999999
Q ss_pred HHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCc--
Q 045431 224 REQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGF-- 301 (433)
Q Consensus 224 ~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~-- 301 (433)
.+++.++++ |+++|+++|+|++++.. ..+..+..+ +..+++.|.+|+++ .+.++||++++++.+.+-.+
T Consensus 156 ~~~i~~l~~-~~~~g~~~vvD~v~s~g---~~~id~~~~----~~D~~~~s~~K~l~-~P~G~G~l~~~~~~~~~~~~~~ 226 (401)
T PLN02409 156 LAGVRKLLD-CAQHPALLLVDGVSSIG---ALDFRMDEW----GVDVALTGSQKALS-LPTGLGIVCASPKALEASKTAK 226 (401)
T ss_pred HHHHHHHHh-hhccCcEEEEEcccccC---Ccccccccc----CccEEEEcCccccC-cCCCcceeEECHHHHHHHhcCC
Confidence 666666666 99999999999998731 112222222 23377778899996 43479999999887522000
Q ss_pred --chhHHH---HHHHhhc---cCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCC----Cc
Q 045431 302 --PVAKDF---NRIVCTC---FNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGK----NA 369 (433)
Q Consensus 302 --~~~~~~---~~~~~~~---~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~----~g 369 (433)
...-.+ .+..... ..+++...+.++.++++......++++++++++.++.+.+.|++.|+++..+. ..
T Consensus 227 ~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~g~~~~~~~~~~~s~ 306 (401)
T PLN02409 227 SPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAWGLKLCTKKPEWRSD 306 (401)
T ss_pred CCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhccc
Confidence 000001 1111111 22455555555555555322245788899999999999999998888876542 22
Q ss_pred cEEEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 370 PYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 370 ~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
...|+.+| +.+..++...+++++||.+.+|.. ......|||+. +.+.+++..++.+|.++|
T Consensus 307 ~v~~~~~p~~~~~~~l~~~l~~~~~i~i~~G~~--~~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l 370 (401)
T PLN02409 307 TVTAVVVPEGIDSAEIVKNAWKKYNLSLGLGLN--KVAGKVFRIGHLGNVNELQLLGALAGVEMVL 370 (401)
T ss_pred ceEEEeCCCCCCHHHHHHHHHHhCCEEEEcCCC--cccCCEEEEcCCCCCCHHHHHHHHHHHHHHH
Confidence 45678876 556677878888888999998864 32357899995 558999999999998875
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-25 Score=214.50 Aligned_cols=347 Identities=10% Similarity=0.029 Sum_probs=219.7
Q ss_pred HHHHHHhcCCCCceEEecCCCCC--C-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCc
Q 045431 52 RKAAHMLKYPDAEVISLGIGDTT--E-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGD 128 (433)
Q Consensus 52 ~~~~~~~~~~~~~~i~l~~g~~~--~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~ 128 (433)
.++......+++..+|+..|... + ..+|.+.+++.+++.+... ...+.......+|.+.++++. + .+.
T Consensus 29 ~~G~~l~d~~G~~~lD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~----~--~~~ 99 (396)
T PRK04073 29 AEGVWVKDPEGNRYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTL---TSRAFHSDQLGPWYEKVAKLT----G--KDM 99 (396)
T ss_pred eeecEEEECCCCEEEEcCCCHHhccCCCCCHHHHHHHHHHHhhccc---cccccCCHHHHHHHHHHHhcC----C--CCe
Confidence 33444455667789999766432 2 3679999999999876431 111112222344555555442 3 368
Q ss_pred EEEcCChHHHHHHHHHhc----------CCC-CEEEEeCCCChhhh-hhHHHhCCcccccccccccceEEEeecCccCCc
Q 045431 129 IFVSDGAKCDISRLQIVF----------GSN-VTMAVQDPSYPAYV-DSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGF 196 (433)
Q Consensus 129 i~~~~G~~~al~~l~~l~----------~~g-d~Vl~~~p~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (433)
+++++++++|+.....+. ++| ++|+..+-+|++.. ......+.......++.....+..++.++.+.+
T Consensus 100 ~~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 179 (396)
T PRK04073 100 VLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPYGDLEAL 179 (396)
T ss_pred EEEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCCCCHHHH
Confidence 999999998887532221 134 67888877777654 333333321111111111222334444321111
Q ss_pred ccCCCCCCCccEEEEcCCCCccccCCCHH-HHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecc
Q 045431 197 FPDLSTVARTDIIFFCSPNNPTGAAATRE-QLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSF 275 (433)
Q Consensus 197 ~~~~~~~~~~~~i~l~~p~nPtG~~~~~~-~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~ 275 (433)
...+ .+++++|+++.++||||.+++.+ .+++|.++|++||+++|+||+|.++...+...........+| +.+|
T Consensus 180 ~~~i--~~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~pd----i~~~ 253 (396)
T PRK04073 180 KAAI--TPNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNVTPD----MYIL 253 (396)
T ss_pred HHhc--ccCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHHhhhcCCCCC----EEEe
Confidence 1111 24677777777799999998764 699999999999999999999998765543222111111122 3368
Q ss_pred cccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHH
Q 045431 276 SKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVET 355 (433)
Q Consensus 276 sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 355 (433)
||.+|.+|+|+||++++++++ +.+.......+.+.+++++.++.+.|+.... +...++.+++++++.+.
T Consensus 254 sK~lg~gg~~ig~~~~~~~i~--------~~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~---~~l~~~~~~~~~~l~~~ 322 (396)
T PRK04073 254 GKALGGGVFPISCVAANRDIL--------GVFTPGSHGSTFGGNPLACAVSIAALEVLEE---EKLPERSLELGEYFKEQ 322 (396)
T ss_pred cccccCCCCcceEEEEcHHHH--------hhhcCCCCCCCCCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHH
Confidence 999997789999999998875 4443333444556789999999988863211 23446667778888888
Q ss_pred HhhcC---CeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe--eccChhHHHHHHHHHHH
Q 045431 356 FNSLG---FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS--AFGHRGNVLEACKRFKH 430 (433)
Q Consensus 356 l~~~g---~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~ 430 (433)
|++++ +....+ .|++++++++. ...++...+++ +||.+.+. +++++||+ +..+++++++++++|++
T Consensus 323 L~~l~~~~i~~~~~-~g~~~~~~~~~-~~~~~~~~l~~-~Gv~~~~~------~~~~iRi~p~l~~t~e~i~~~~~~l~~ 393 (396)
T PRK04073 323 LKEIDNPMIKEVRG-RGLFIGVELNE-PARPYCEALKE-EGLLCKET------HETVIRFAPPLVITKEELDWAFEKIKA 393 (396)
T ss_pred HHhhcCCcccceec-ceEEEEEEecc-hHHHHHHHHHH-CCeEEecC------CCCEEEEECCcccCHHHHHHHHHHHHH
Confidence 88763 222333 57788888863 45566666655 59999753 24689999 57799999999999998
Q ss_pred hhC
Q 045431 431 LYK 433 (433)
Q Consensus 431 ~l~ 433 (433)
++.
T Consensus 394 ~l~ 396 (396)
T PRK04073 394 VLS 396 (396)
T ss_pred HhC
Confidence 863
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-24 Score=207.61 Aligned_cols=324 Identities=13% Similarity=0.094 Sum_probs=212.0
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCC---CCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEG---YSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDIS 140 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~ 140 (433)
+.|++..-.-.-|+++.+.+++.+......+... ...+.......++|+.+|+++ ++ +++++++|+++++.
T Consensus 19 ~~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~----g~--~~~~~~~g~t~a~~ 92 (387)
T PRK09331 19 EFINLDPIQRGGILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFL----GM--DEARVTHGAREGKF 92 (387)
T ss_pred cccccChhhcCCCCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHh----CC--CcEEEeCCHHHHHH
Confidence 4677654443457889999999998854432111 222333446899999999997 65 46888999999998
Q ss_pred H-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeec--CccCCcccC-CCC---------CCCcc
Q 045431 141 R-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRC--TAENGFFPD-LST---------VARTD 207 (433)
Q Consensus 141 ~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~---------~~~~~ 207 (433)
+ +..++++||+|+++.++|.+....++..| .+++.++. +.+..+..+ +++ .++++
T Consensus 93 ~al~~l~~~gd~Vlv~~~~h~s~~~~~~~~G------------~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~ 160 (387)
T PRK09331 93 AVMHSLCKKGDYVVLDGLAHYTSYVAAERAG------------LNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPA 160 (387)
T ss_pred HHHHHhcCCCCEEEECCCchHHHHHHHHHcC------------CEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCE
Confidence 7 67888999999999999988877777777 47788877 332222221 111 13689
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccccccee
Q 045431 208 IIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLG 287 (433)
Q Consensus 208 ~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G 287 (433)
+|++++|+||||...+ +++|.++|++||+++|+|++|+.... +.+.... +..++++|++|+++ ++.++|
T Consensus 161 lV~l~~~~~~tG~~~~---l~~I~~la~~~g~~livD~a~~~g~~---~~~~~~~----g~D~~~~s~~K~l~-~~~~~G 229 (387)
T PRK09331 161 LALLTHVDGNYGNLAD---AKKVAKVAHEYGIPFLLNGAYTVGRM---PVDGKKL----GADFIVGSGHKSMA-ASAPSG 229 (387)
T ss_pred EEEEECCCCCCccccc---HHHHHHHHHHcCCEEEEECCcccCCc---CCCHHHc----CCCEEEeeCccccc-CCCCEE
Confidence 9999999999998776 88999999999999999999984211 2333222 23488999999997 667899
Q ss_pred eeeccccccccCCcchhHHHHHHHhh--------ccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc
Q 045431 288 WTVIPKELLFSDGFPVAKDFNRIVCT--------CFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 288 ~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 359 (433)
|++++++++ +.+.+.... ...+.......++.+.+.. ..+.++ ..++..++.+++.+.|+++
T Consensus 230 ~l~~~~~~i--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~~-~~~~~~-~~~~~~~~~~~l~~~L~~l 299 (387)
T PRK09331 230 VLATTEEYA--------DKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFPH-VVERVK-RWDEEVKKARWFVDELEKI 299 (387)
T ss_pred EEEECHHHH--------hhcccccCCCcccceeeeceecCchHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHhcC
Confidence 999998875 222111000 0001111111112222221 011222 3445567778899999999
Q ss_pred -CCeeec--CCCccEEEEECCCC---------ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee-ccChhHHHHHHH
Q 045431 360 -GFKVYG--GKNAPYVWVQFPGR---------SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA-FGHRGNVLEACK 426 (433)
Q Consensus 360 -g~~~~~--~~~g~~~~~~~~~~---------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~-~~~~~~l~~~l~ 426 (433)
|+++.. +....++.++.+.. ...++.+.| +++||...+ ......+|+.. ..+.++++.+++
T Consensus 300 ~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L-~~~gI~~~~-----~~~~~i~ri~~~g~t~~di~~l~~ 373 (387)
T PRK09331 300 EGFKQLGEKPRNHDLMKFETPSFDEIAKKHKRRGFFLYEEL-KKRGIHGIK-----PGATKEFKLSTYGLTWEQVEYVAD 373 (387)
T ss_pred CCEEEeccCcCcCCeEEEeCCchhHHhhhccccchhHHHHH-HHcCceEEc-----cCCceEEEEEeccCCHHHHHHHHH
Confidence 988873 23455666665522 113355555 456998432 12245677775 459999999999
Q ss_pred HHHHhh
Q 045431 427 RFKHLY 432 (433)
Q Consensus 427 ~l~~~l 432 (433)
.|++++
T Consensus 374 aL~~i~ 379 (387)
T PRK09331 374 AFKEIA 379 (387)
T ss_pred HHHHHH
Confidence 999875
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-24 Score=208.33 Aligned_cols=352 Identities=9% Similarity=0.048 Sum_probs=215.4
Q ss_pred HHHHhcCCCCceEEecCCCCCC---CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCC-CcE
Q 045431 54 AAHMLKYPDAEVISLGIGDTTE---PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEE-GDI 129 (433)
Q Consensus 54 ~~~~~~~~~~~~i~l~~g~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~-~~i 129 (433)
+......+++..+|+..|.... ..++.+.+++.+++.+.. . .+.+..+.+. ..++|+++....+.+. +.+
T Consensus 32 G~~l~d~dG~~~lD~~~g~~~~~lGh~~~~i~~a~~~~~~~~~----~-~~~~~~~~~~-~~~la~~l~~~~~~~~~~~~ 105 (425)
T PRK08088 32 NCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLS----H-TCFQVLAYEP-YLELCEKMNQKVPGDFAKKT 105 (425)
T ss_pred eCEEEeCCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHhhCC----C-ccccccCCHH-HHHHHHHHHHhCCCCCCCEE
Confidence 3334455677899998775433 258999999999987532 1 1111122333 3477777765223221 345
Q ss_pred EEcCChHHHHH----HHHHhcCCCCEEEEeCCCChhhhhhHHHhCCccc-c-cccccccceEEE--eecCccCCccc---
Q 045431 130 FVSDGAKCDIS----RLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGE-F-QKDAEKYGKIEY--MRCTAENGFFP--- 198 (433)
Q Consensus 130 ~~~~G~~~al~----~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~-~-~~~~~~~~~~~~--~~~~~~~~~~~--- 198 (433)
++++++++++. ++....++ ..|+..+++|++........+.... + ...+.....+.. +|.+.. +...
T Consensus 106 ~f~~sGsea~e~Alklar~~~~r-~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~ 183 (425)
T PRK08088 106 LLVTTGSEAVENAVKIARAATKR-SGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLH-GVSEDDA 183 (425)
T ss_pred EEeCCcHHHHHHHHHHHHHHhCC-CeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCcccc-CccHHHH
Confidence 44444445444 33333344 4566669999998766665543110 0 000000011111 222111 1100
Q ss_pred --CCCC-------CCCccEEEEc-CCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcc
Q 045431 199 --DLST-------VARTDIIFFC-SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEV 268 (433)
Q Consensus 199 --~~~~-------~~~~~~i~l~-~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~ 268 (433)
+++. ..++.++++. ..++++....+.+.+++|.++|++||+++|+||+|.++.+.+.+.++... +.
T Consensus 184 ~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~~~~~~----~~ 259 (425)
T PRK08088 184 IASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQM----GV 259 (425)
T ss_pred HHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhHHhhc----CC
Confidence 0111 1345555543 33788778889999999999999999999999999986555433222122 22
Q ss_pred eEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-hHHHHHHHHHHH
Q 045431 269 AIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-KAVHEVIGFYKE 347 (433)
Q Consensus 269 vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~ 347 (433)
+..+.||||.++ +|+|+||++++++++ +.+.......+.+.+++.|.++.++++.... ++++++++..+.
T Consensus 260 ~pdi~s~sK~l~-~G~rig~v~~~~~~~--------~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 330 (425)
T PRK08088 260 AADLTTFAKSIA-GGFPLAGVTGRAEVM--------DAIAPGGLGGTYAGNPIACAAALAVLKVFEQENLLQKANALGEK 330 (425)
T ss_pred CCCEEEEecccc-CCCcceeeEecHHHH--------hhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 345789999998 999999999998885 4444444555667899999999999985433 456666666555
Q ss_pred HHHHHHHHHhhcCC-eeecCCCccEEEEECCC-C--------ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec--
Q 045431 348 NTDIIVETFNSLGF-KVYGGKNAPYVWVQFPG-R--------SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF-- 415 (433)
Q Consensus 348 ~~~~l~~~l~~~g~-~~~~~~~g~~~~~~~~~-~--------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~-- 415 (433)
.++.+.+.+..++. ....+ .|+++|+.+.. . ....+...+++ .||.+.|+..| .+.+||++.
T Consensus 331 ~~~~l~~l~~~~~~~~~v~g-~G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~-~Gv~~~~~~~~----~~~iRl~~~~~ 404 (425)
T PRK08088 331 LKDGLLAIAEKHPEIGDVRG-LGAMIAIELFEDGDHSKPNAKLTAQIVARARD-KGLILLSCGPY----YNVLRILVPLT 404 (425)
T ss_pred HHHHHHHHHHhCCCeEEEec-cceEEEEEEecCCCCCCCCHHHHHHHHHHHHh-CCCEEecCCCC----CCEEEEECCCC
Confidence 55555555555532 22222 28899999831 1 13445555554 59988876544 368999964
Q ss_pred cChhHHHHHHHHHHHhh
Q 045431 416 GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 416 ~~~~~l~~~l~~l~~~l 432 (433)
.+++++++++++|++++
T Consensus 405 ~t~~ei~~~i~~l~~~l 421 (425)
T PRK08088 405 IEDAQIRQGLEIIAQCF 421 (425)
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 47999999999999876
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-24 Score=207.93 Aligned_cols=325 Identities=15% Similarity=0.149 Sum_probs=208.0
Q ss_pred CChHHHHHHHHHHHhhcccCCCCCCCC--C--CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhc---C
Q 045431 76 PIPEVITSALAKRSYALSTQEGYSGYG--A--EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVF---G 147 (433)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~Y~--~--~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~---~ 147 (433)
+.|+.+.+++.+.+..... .....+. . ..-..++|+.+++++ ++++++|++|+|+++++.+ +..++ .
T Consensus 10 ~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r~~la~~~----g~~~~~i~~t~~~t~a~~~al~~~~~~~~ 84 (379)
T TIGR03402 10 RVDPEVLEAMLPYFTEYFG-NPSSMHSFGGEVGKAVEEAREQVAKLL----GAEPDEIIFTSGGTESDNTAIKSALAAQP 84 (379)
T ss_pred CCCHHHHHHHHHHHHhcCC-CCCcccHHHHHHHHHHHHHHHHHHHHh----CCCCCeEEEeCcHHHHHHHHHHHHHHhcC
Confidence 5778899999887753211 1111110 0 112456667777776 8888999999999999986 44443 5
Q ss_pred CCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEEEEcCCCCccccCCCH
Q 045431 148 SNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIFFCSPNNPTGAAATR 224 (433)
Q Consensus 148 ~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~~p~nPtG~~~~~ 224 (433)
+||+|++...+|+++...+..+...+ .+++.++.+.++....+ +++ .++++++++++++||||.+++
T Consensus 85 ~~~~vv~~~~~~~s~~~~~~~~~~~G---------~~v~~v~~~~~g~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~- 154 (379)
T TIGR03402 85 EKRHIITTAVEHPAVLSLCQHLEKQG---------YKVTYLPVDEEGRLDLEELRAAITDDTALVSVMWANNETGTIFP- 154 (379)
T ss_pred CCCeEEEcccccHHHHHHHHHHHHcC---------CEEEEEccCCCCcCCHHHHHHhcCCCcEEEEEEcccCCeeeccc-
Confidence 67899999999988766555442222 37778877644322222 221 357889999999999999999
Q ss_pred HHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcchh
Q 045431 225 EQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVA 304 (433)
Q Consensus 225 ~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~ 304 (433)
+++|.++|+++|+++++|++++.. ..+..+... +..+++.|.+|.+|.+| +|++++++.... .+...
T Consensus 155 --~~~I~~l~~~~g~~vivD~~~~~g---~~~~~~~~~----~~D~~~~s~~K~~gp~G--~g~l~v~~~~~~--~p~~~ 221 (379)
T TIGR03402 155 --IEEIGEIAKERGALFHTDAVQAVG---KIPIDLKEM----NIDMLSLSGHKLHGPKG--VGALYIRKGTRF--RPLLR 221 (379)
T ss_pred --HHHHHHHHHHcCCEEEEECccccc---ccccCcccC----CCCEEEEcHHHcCCCCc--eEEEEECCCCCC--CCccc
Confidence 568899999999999999999831 113333322 22377888899776556 888888766521 11110
Q ss_pred HHH-HHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhh-c-CCeeecCCC---ccEEEEECCC
Q 045431 305 KDF-NRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNS-L-GFKVYGGKN---APYVWVQFPG 378 (433)
Q Consensus 305 ~~~-~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~-g~~~~~~~~---g~~~~~~~~~ 378 (433)
... .... ...+.+.....++.++++. ..+++++..++.++.++.+.+.|.+ . ++.+..+.. ...+.+.+++
T Consensus 222 g~~~~~~~--~~gt~~~~~~~~l~~al~~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (379)
T TIGR03402 222 GGHQERGR--RAGTENVPGIVGLGKAAEL-ATEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEY 298 (379)
T ss_pred CCccCCCc--CCCCccHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEecC
Confidence 000 0001 1122333333333344431 1235677778888999999999885 5 666654321 1123233344
Q ss_pred CChHHHHHHHHHcCCeEecCCCCCCCCC-----------------CCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 379 RSSWDVFSEILEKTHVVTTPGSGFGPGG-----------------EGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 379 ~~~~~~~~~l~~~~gi~v~~g~~f~~~~-----------------~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
.+..++...| +++||.+.+|..|.... .+.+|+|+ +++++|++++++.|++++
T Consensus 299 ~~~~~~~~~l-~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~ 370 (379)
T TIGR03402 299 IEGEAILLLL-DMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPII 370 (379)
T ss_pred CCHHHHHHhh-ccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 4556666654 56699999998875331 36899995 679999999999998875
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=208.69 Aligned_cols=319 Identities=13% Similarity=0.090 Sum_probs=202.9
Q ss_pred CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCC--CcEEEcCChHHHHHH-HHHhcCCCCE
Q 045431 75 EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEE--GDIFVSDGAKCDISR-LQIVFGSNVT 151 (433)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~--~~i~~~~G~~~al~~-l~~l~~~gd~ 151 (433)
.++++.+.+++.+... .....|. .-..++|+.+++++ ++++ +.|++++|+++++.. +.+++.+||.
T Consensus 14 ~~~~~~~~~a~~~~~~-----~~~~~~~--~~~~~~~~~l~~l~----~~~~~~~~i~~~~~gt~~l~~~~~~l~~~~~~ 82 (368)
T PRK13479 14 LTTSRTVREAMLRDWG-----SWDDDFN--ALTASVRAKLVAIA----TGEEGYTCVPLQGSGTFSVEAAIGSLVPRDGK 82 (368)
T ss_pred CCCCHHHHHHhCCCCC-----CCChHHH--HHHHHHHHHHHHHh----CCCCCceEEEEcCCcHHHHHHHHHhccCCCCe
Confidence 3456666666555321 1111232 24567777777776 6654 568899999999997 6788899999
Q ss_pred EEEeCCCChhhh--hhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC----CCCccEEEEcCCCCccccCCCH
Q 045431 152 MAVQDPSYPAYV--DSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST----VARTDIIFFCSPNNPTGAAATR 224 (433)
Q Consensus 152 Vl~~~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~i~l~~p~nPtG~~~~~ 224 (433)
|++++++|++.. ..++..| .+++.++.+.+..++.+ +++ .++++++++++|+||||...+
T Consensus 83 vlv~~~~~~~~~~~~~~~~~g------------~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~- 149 (368)
T PRK13479 83 VLVPDNGAYGARIAQIAEYLG------------IAHVVLDTGEDEPPDAAEVEAALAADPRITHVALVHCETTTGILNP- 149 (368)
T ss_pred EEEEeCCchHHHHHHHHHHcC------------CcEEEEECCCCCCCCHHHHHHHHHhCCCCcEEEEEcccCccccccC-
Confidence 999988887653 5556666 47777887643333222 221 245678899999999999998
Q ss_pred HHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccc-cccccceeeeeccccccccCCcc-
Q 045431 225 EQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYA-GFTGVRLGWTVIPKELLFSDGFP- 302 (433)
Q Consensus 225 ~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~-~~~G~r~G~l~~~~~~~~~~~~~- 302 (433)
+++|.++|+++|+++|+|++++ +. ..+.++...+ ..++++|++|++ |++| +||++++++.+......
T Consensus 150 --~~~i~~l~~~~~~~livDa~~~-~g--~~~~~~~~~~----~d~~v~s~~K~l~g~~G--~G~l~~~~~~~~~~~~~~ 218 (368)
T PRK13479 150 --LDEIAAVAKRHGKRLIVDAMSS-FG--AIPIDIAELG----IDALISSANKCIEGVPG--FGFVIARRSELEACKGNS 218 (368)
T ss_pred --HHHHHHHHHHcCCEEEEEcccc-cC--CccccccccC----ceEEEecCccccccCCC--ceEEEECHHHHHHhhcCC
Confidence 6788899999999999997664 32 2233343331 237778999976 5566 79999998875210000
Q ss_pred ---hhHHHHHHH-----hhccCCCcHHHHHHHHHhcCcCCh-hHHHHHHHHHHHHHHHHHHHHhhcCCeeecCC---Ccc
Q 045431 303 ---VAKDFNRIV-----CTCFNGASNISQAGGLACLSPEGF-KAVHEVIGFYKENTDIIVETFNSLGFKVYGGK---NAP 370 (433)
Q Consensus 303 ---~~~~~~~~~-----~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~---~g~ 370 (433)
..+...... .....+++...+.++.+++..... .++++..++++++++.+.+.|+++|+.+..+. ...
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 298 (368)
T PRK13479 219 RSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRALGFEPLLDAEIQSPI 298 (368)
T ss_pred CCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcCCcccCCchhcCce
Confidence 000000000 011123444444444444331111 13567778999999999999999988765332 112
Q ss_pred EEEEECCC---CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 371 YVWVQFPG---RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 371 ~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
.+.+.++. .+..++...+.++ ||.+.+|..+ ..+++|++. +.++++++.+++.|++++
T Consensus 299 ~~~~~~~~~~~~~~~~l~~~L~~~-gi~v~~g~~~---~~~~iRis~~~~~t~edi~~~l~~L~~~l 361 (368)
T PRK13479 299 IVTFHAPADPAYDFKEFYERLKEQ-GFVIYPGKLT---QVDTFRIGCIGDVDAADIRRLVAAIAEAL 361 (368)
T ss_pred EEEEECCCCCCcCHHHHHHHHHHC-CEEEecCCCC---CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 23333332 3556677776655 9999988643 246899985 348999999999999875
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-23 Score=202.73 Aligned_cols=344 Identities=10% Similarity=0.069 Sum_probs=221.3
Q ss_pred HHHHhcCCCCceEEecCCC--CCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCC-cEE
Q 045431 54 AAHMLKYPDAEVISLGIGD--TTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEG-DIF 130 (433)
Q Consensus 54 ~~~~~~~~~~~~i~l~~g~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~-~i~ 130 (433)
+......++...||+..|. ..+...|.+.+++.+++.... .+ +..-..++++++++.+. ..++ .++
T Consensus 20 G~~l~d~dg~~~lD~~s~~~~~~lG~~p~v~~a~~~~~~~~~------~~-~~~~~~~~~~~la~~l~----~~~~~~~~ 88 (375)
T PRK04260 20 GNYLIDTDGKKYLDFSSGIGVTNLGFHPQVQQALQKQAGLIW------HS-PNLYLNSLQEEVAQKLI----GDKDYLAF 88 (375)
T ss_pred eCEEEeCCCCEEEECCCCcccccCCCCHHHHHHHHHHHHhcC------cc-cCccCCHHHHHHHHHHh----cCcCCEEE
Confidence 3334445677899997763 234557789999999886531 11 12234678889998763 2234 357
Q ss_pred EcCChHHHHHH-HHHh--cCCCCEEEEeCCCChhhh-hhHHHhCCcccccccccccceEEEeecCccCCcccCCCCCCCc
Q 045431 131 VSDGAKCDISR-LQIV--FGSNVTMAVQDPSYPAYV-DSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVART 206 (433)
Q Consensus 131 ~~~G~~~al~~-l~~l--~~~gd~Vl~~~p~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (433)
++++++++... +... ...+++|++.+.+|++.. ......+....-..++.....+...+.++...+...+ .+++
T Consensus 89 ~~~SGseA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~l~~~l--~~~~ 166 (375)
T PRK04260 89 FCNSGAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAIFNDLNSVKALV--NKNT 166 (375)
T ss_pred EcCccHHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeCCCCHHHHHHhc--CCCe
Confidence 88888888875 3222 355678999888887643 3333333211100111111111111111100111111 1456
Q ss_pred cEEEEcCCCCccccCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccc
Q 045431 207 DIIFFCSPNNPTGAAA-TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVR 285 (433)
Q Consensus 207 ~~i~l~~p~nPtG~~~-~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r 285 (433)
.+|++..++|++|+.. +.+.++++.++|+++|+++|+||+|.++...+.+.+.......+| +.||||.++ +|+|
T Consensus 167 a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~pd----i~t~sK~l~-~G~~ 241 (375)
T PRK04260 167 AAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEPD----IFTLAKGLA-NGVP 241 (375)
T ss_pred EEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCCCCC----EEEeccccc-CCcc
Confidence 6777778899999875 467899999999999999999999987755543332212222234 348999998 8999
Q ss_pred eeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-hHHHHHHHHHHHHHHHHHHHHhhcC-Cee
Q 045431 286 LGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-KAVHEVIGFYKENTDIIVETFNSLG-FKV 363 (433)
Q Consensus 286 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~g-~~~ 363 (433)
+||+++++++. +.+.......+.+.+++.+.++.++++.... .++++.++..+..++.+.+.+.+++ +..
T Consensus 242 ig~~~~~~~~~--------~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 313 (375)
T PRK04260 242 VGAMLAKSSLG--------GAFGYGSHGSTFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQLQKALQDKETVTT 313 (375)
T ss_pred eEEEEEcHHHH--------hhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCeeE
Confidence 99999998874 4443333344556789999999999864332 4567777777777777777777664 333
Q ss_pred ecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 364 YGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 364 ~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
.. ..|+++|++++. ...++..++.+ +||.+.|+ +.+.+|++. ..+++++++++++|++++
T Consensus 314 ~~-~~g~~~~~~~~~-~~~~~~~~l~~-~Gi~v~~~------~~~~lR~~~~~~~t~~~i~~~l~~l~~~~ 375 (375)
T PRK04260 314 VR-GLGYMIGIETTA-DLSQLVEAARD-KGLIVLTA------GTNVIRLLPPLTLTKEEIEQGIAILSEVF 375 (375)
T ss_pred Ee-ccceEEEEEecC-cHHHHHHHHHh-CCCEEecC------CCCEEEEcCCCccCHHHHHHHHHHHHHhC
Confidence 33 378999999843 45566666555 59999764 247799996 348999999999998764
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.8e-24 Score=205.28 Aligned_cols=224 Identities=14% Similarity=0.118 Sum_probs=163.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHH----HhCCc
Q 045431 98 YSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSV----IMGQT 172 (433)
Q Consensus 98 ~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~----~~g~~ 172 (433)
+..|+ ......|++.||++. + .+++++++|+++++.+ +..++++||+|++++|+|+.+...+. ..|
T Consensus 77 y~R~~-~Pt~~~Le~~lA~le----g--~~~~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~G-- 147 (427)
T PRK07049 77 YSRFN-HPNSEIVEDRLAVYE----G--AESAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNFG-- 147 (427)
T ss_pred ccCCC-CcCHHHHHHHHHHHh----C--CCcEEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHhcC--
Confidence 34564 455689999999986 4 3468888888888887 67889999999999999999876643 345
Q ss_pred ccccccccccceEEEeecCcc-CCcccCCC---CCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHH---cCCEEEEec
Q 045431 173 GEFQKDAEKYGKIEYMRCTAE-NGFFPDLS---TVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKD---NGSIIVYDS 245 (433)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~---~~~~li~De 245 (433)
.+++.++...+ ..+...+. ..+++++|++++|+||||.+++.+++.+|++.|.+ +++++|+||
T Consensus 148 ----------i~~v~~~~~~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDe 217 (427)
T PRK07049 148 ----------VGAVGFADGLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDN 217 (427)
T ss_pred ----------cEEEEEeCCCCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEEC
Confidence 24444442211 11111111 12578999999999999999999999999888654 789999999
Q ss_pred cccccccCCCCCcccccCCCCcceEEEeccccccc-ccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHH
Q 045431 246 AYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAG-FTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQA 324 (433)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~-~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 324 (433)
+|...... .++ .. +..|++.|+||.+| .+|+|+||++++++++ +.+...........+++.|.
T Consensus 218 ty~~~~~~---~pl-~~----g~divv~S~SK~~gG~~glr~G~vv~~~~l~--------~~l~~~~~~~g~~ls~~~a~ 281 (427)
T PRK07049 218 TLLGPVFQ---KPL-EH----GADLSVYSLTKYVGGHSDLVAGAVLGRKALI--------RQVRALRSAIGTQLDPHSCW 281 (427)
T ss_pred CccccccC---Ccc-cc----CCCEEEEcCceeecCCCCcEEEEEECCHHHH--------HHHHHHHHhcCCCCCHHHHH
Confidence 98754321 122 11 23588889999998 6899999999988774 66666665555668888888
Q ss_pred HHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CC
Q 045431 325 GGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GF 361 (433)
Q Consensus 325 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 361 (433)
++.+.++ .+..+.++..++++.+.+.|+++ ++
T Consensus 282 l~~r~L~-----tl~~R~~~~~~~a~~la~~L~~~p~V 314 (427)
T PRK07049 282 MLGRSLE-----TLVLRMERANRNARAVAEFLRDHPKV 314 (427)
T ss_pred HHHcCCC-----hHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 8777775 23555566689999999999987 54
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.2e-24 Score=203.61 Aligned_cols=220 Identities=16% Similarity=0.154 Sum_probs=160.0
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHH-----HhCCcccccc
Q 045431 104 EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSV-----IMGQTGEFQK 177 (433)
Q Consensus 104 ~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~-----~~g~~~~~~~ 177 (433)
..-..+|++.+|++. +. +.+++++|+++++.+ +.+++++||+|+++.|.|+.+...+. ..|
T Consensus 75 ~Pt~~~LE~~lA~l~----g~--~~~l~~~sG~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G------- 141 (418)
T PLN02242 75 NPTVLNLGRQMAALE----GT--EAAYCTASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCN------- 141 (418)
T ss_pred ChhHHHHHHHHHHHh----CC--CeEEEEccHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccC-------
Confidence 556788999999986 44 466788999999986 67889999999999999988876553 233
Q ss_pred cccccceEEEeecCccCCcccCCCCCC-CccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCC
Q 045431 178 DAEKYGKIEYMRCTAENGFFPDLSTVA-RTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNP 256 (433)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~ 256 (433)
.+++.++.++...+...+ .+ ++++|++++|+||||.+++ +++|+++|++||++||+|++|..+.+. +
T Consensus 142 -----~~~~~~d~~d~e~l~~~i--~~~~tklV~lesp~NPtG~v~d---l~~I~~la~~~gi~livDea~~~~~~~--~ 209 (418)
T PLN02242 142 -----ITTTFVDITDLEAVKKAV--VPGKTKVLYFESISNPTLTVAD---IPELARIAHEKGVTVVVDNTFAPMVLS--P 209 (418)
T ss_pred -----ceEEEcCCCCHHHHHHhc--CcCCCEEEEEecCCCCCCcccC---HHHHHHHHHHhCCEEEEECCCCccCCC--H
Confidence 255555543211111111 24 5899999999999999886 889999999999999999999865442 1
Q ss_pred CcccccCCCCcceEEEecccccccccccc-eeeeeccccccccCCcchhHHHHHHHh--hccCCCcHHHHHHHHHhcCcC
Q 045431 257 RSIFEIPGAKEVAIETSSFSKYAGFTGVR-LGWTVIPKELLFSDGFPVAKDFNRIVC--TCFNGASNISQAGGLACLSPE 333 (433)
Q Consensus 257 ~~~~~~~~~~~~vi~i~S~sK~~~~~G~r-~G~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~ 333 (433)
..+ +..|++.||||.++.+|.+ .||++++++++ +.+.+... ....+.+...|.++..+...
T Consensus 210 ---~~~----g~divv~S~SK~l~g~g~~~gG~iv~~~~li--------~~l~~~~~~~~~~~g~~~~~~~A~l~~~~l- 273 (418)
T PLN02242 210 ---ARL----GADVVVHSISKFISGGADIIAGAVCGPAELV--------NSMMDLHHGALMLLGPTMNPKVAFELSERL- 273 (418)
T ss_pred ---HHc----CCcEEEEeCccccCCCCCceEEEEEcCHHHH--------HHHHHHhhhhhhccCCCCCHHHHHHHHcCC-
Confidence 122 2358899999999878887 59999988875 45554433 12344566667766666542
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecC
Q 045431 334 GFKAVHEVIGFYKENTDIIVETFNSLGFKVYGG 366 (433)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ 366 (433)
..+..+.++++++++.+.+.|+++++.+..|
T Consensus 274 --~tl~~r~~~~~~~a~~la~~L~~~~~~V~yP 304 (418)
T PLN02242 274 --PHLSLRMKEHCRRAMEYAKRMKELGLKVIYP 304 (418)
T ss_pred --CcHHHHHHHHHHHHHHHHHHHHhCCCEEECC
Confidence 2446677899999999999999987776543
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.9e-24 Score=208.31 Aligned_cols=337 Identities=15% Similarity=0.162 Sum_probs=216.2
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHH---hccCCCCCCcEEEcCChHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTF---YKDLGIEEGDIFVSDGAKCDIS 140 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l---~~~~~~~~~~i~~~~G~~~al~ 140 (433)
.++.++.|.++...|..+.+++...-. . ..+..|.+ .-...++++++++. .+.++++++++++|+|+++++.
T Consensus 69 ~~~~lg~g~~~~~~p~~~~~~~~~~~~-~---~~y~~~~~-~~~~g~~~~~~e~~~~la~l~g~~~~~v~~~~g~t~~~~ 143 (447)
T PRK00451 69 YPSFLGAGAYDHYIPAVVDHIISRSEF-Y---TAYTPYQP-EISQGTLQAIFEYQTMICELTGMDVANASMYDGATALAE 143 (447)
T ss_pred CcccCcccccCCcCcHHHHHHHhchhH-H---HhcCCCCC-ccchHHHHHHHHHHHHHHHHhCCCcceEEecCcHHHHHH
Confidence 578899999888778777665543311 0 11222222 22344666666443 5556888889999999999998
Q ss_pred H-HHHh-cCCCCEEEEeCCCChhhhhhHHHhCC-cccccccccccceEEEeecCccCCcccC-CCC--CCCccEEEEcCC
Q 045431 141 R-LQIV-FGSNVTMAVQDPSYPAYVDSSVIMGQ-TGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIFFCSP 214 (433)
Q Consensus 141 ~-l~~l-~~~gd~Vl~~~p~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~~p 214 (433)
+ +.++ +.+||+|++.++.|+.+...+..++. .| .+++.++.+++ ..+.+ +++ .+++++|++++|
T Consensus 144 ~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G---------~~~~~v~~~~~-~~d~~~l~~~i~~~t~~v~l~~p 213 (447)
T PRK00451 144 AALMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQG---------IEVVEVPYEDG-VTDLEALEAAVDDDTAAVVVQYP 213 (447)
T ss_pred HHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCC---------cEEEEecCCCC-CCCHHHHHHhcCCCeEEEEEECC
Confidence 7 4555 47999999999999998877765311 11 47888887653 22222 221 367899999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCCEEEE--eccccccccCCCCCcccccCCCCcceEEEe---cccccccccccceeee
Q 045431 215 NNPTGAAATREQLTRLVQFAKDNGSIIVY--DSAYALYISDDNPRSIFEIPGAKEVAIETS---SFSKYAGFTGVRLGWT 289 (433)
Q Consensus 215 ~nPtG~~~~~~~~~~i~~~a~~~~~~li~--De~~~~~~~~~~~~~~~~~~~~~~~vi~i~---S~sK~~~~~G~r~G~l 289 (433)
||||.+.+ +++|.++|+++|+++++ |.+.... ..... ..+..++++ +|||.++++|+++||+
T Consensus 214 -n~tG~v~~---l~~I~~~a~~~~~~~iv~~d~~~~g~-----~~~~~----~~~~D~~~~s~~k~~~~~~~~Gpg~G~l 280 (447)
T PRK00451 214 -NFFGVIED---LEEIAEIAHAGGALFIVGVDPVSLGL-----LKPPG----EYGADIVVGEGQPLGIPLSFGGPYLGFF 280 (447)
T ss_pred -CCCCeeCC---HHHHHHHHHHCCCEEEEEcChHHhcc-----CCCcc----cCCCCEEEECCCcCCCCCCCCCCCchHH
Confidence 89999876 88999999999999988 4332111 11111 122336555 6777777889999999
Q ss_pred eccccccccCCcch-------------------h-HHHHHHHhhccCCCcHHHH-HHHHHhcCcCChhHHHHHHHHHHHH
Q 045431 290 VIPKELLFSDGFPV-------------------A-KDFNRIVCTCFNGASNISQ-AGGLACLSPEGFKAVHEVIGFYKEN 348 (433)
Q Consensus 290 ~~~~~~~~~~~~~~-------------------~-~~~~~~~~~~~~~~~~~~q-~~~~~~l~~~~~~~~~~~~~~~~~~ 348 (433)
+++++++......+ . ..+++.......+.+...| .++..++...+...+++.++++.++
T Consensus 281 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~ 360 (447)
T PRK00451 281 ATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIYMSLLGPEGLRELAEQNHQK 360 (447)
T ss_pred HhhHHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 99888763210000 0 0011111122222222233 2333233322335678999999999
Q ss_pred HHHHHHHHhhc-CCeeecCCCccEEE--EECCCCChHHHHHHHHHcCCeE-ecCCCCCCCCCCCeEEEee--ccChhHHH
Q 045431 349 TDIIVETFNSL-GFKVYGGKNAPYVW--VQFPGRSSWDVFSEILEKTHVV-TTPGSGFGPGGEGFIRVSA--FGHRGNVL 422 (433)
Q Consensus 349 ~~~l~~~l~~~-g~~~~~~~~g~~~~--~~~~~~~~~~~~~~l~~~~gi~-v~~g~~f~~~~~~~iRi~~--~~~~~~l~ 422 (433)
++++.+.|+++ |+.+. .+++|.+ ++++ ....++.++|.++ ||. ..++..|.+...+++|+++ ++++++++
T Consensus 361 ~~~l~~~L~~~~g~~~~--~~~~~~~~~v~~~-~~~~~~~~~L~~~-gi~~~~~~~~~~~~~~~~~rvs~~~~~t~e~i~ 436 (447)
T PRK00451 361 AHYLAERLAEIGGVELF--DGPFFNEFVVRLP-KPAEEVNEALLEK-GILGGYDLGRYYPELGNHLLVCVTEKRTKEDID 436 (447)
T ss_pred HHHHHHHHhhcCCEEec--CCCeEEEEEEecC-CCHHHHHHHHHhc-CCCCCcccccccCCcCCEEEEecCCCCCHHHHH
Confidence 99999999988 67765 3444433 5554 3567788887766 665 3456655544457899997 57899999
Q ss_pred HHHHHHHHhh
Q 045431 423 EACKRFKHLY 432 (433)
Q Consensus 423 ~~l~~l~~~l 432 (433)
++++.|++++
T Consensus 437 ~l~~~L~~~~ 446 (447)
T PRK00451 437 ALVAALGEVL 446 (447)
T ss_pred HHHHHHHHHh
Confidence 9999999875
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.4e-24 Score=207.37 Aligned_cols=350 Identities=12% Similarity=0.080 Sum_probs=222.6
Q ss_pred HHHHHHhcCCCCceEEecCCCCCC---CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCc
Q 045431 52 RKAAHMLKYPDAEVISLGIGDTTE---PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGD 128 (433)
Q Consensus 52 ~~~~~~~~~~~~~~i~l~~g~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~ 128 (433)
..+......+++..+|+..|.... ..++.+.+++.+++.+.. ..+.+..+..+|+++|++++ +. .++
T Consensus 37 ~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~-----~~~~~~~~~~~lae~l~~~~----~~-~~~ 106 (423)
T TIGR00713 37 GKGAYLYDVDGNEYIDYVLSWGPLILGHAHPRVVEAVKEALERGT-----SYGAPTEAEILLAKEIISRV----PS-VEM 106 (423)
T ss_pred ccCCEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHHHhCC-----cCCCCCHHHHHHHHHHHHhC----Cc-ccE
Confidence 344444556778899998886542 478999999999997521 11224568899999999986 22 368
Q ss_pred EEEcCChHHHHHHHHH---hcCCCCEEEEeCCCChhhhhhHHHhCCccc---ccccccc-----cceEEEeecCccCCcc
Q 045431 129 IFVSDGAKCDISRLQI---VFGSNVTMAVQDPSYPAYVDSSVIMGQTGE---FQKDAEK-----YGKIEYMRCTAENGFF 197 (433)
Q Consensus 129 i~~~~G~~~al~~l~~---l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~---~~~~~~~-----~~~~~~~~~~~~~~~~ 197 (433)
|++++|+++++..... .....++|+..+++|++...........+. ....... ......++.++...+.
T Consensus 107 v~~~~sGseA~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 186 (423)
T TIGR00713 107 VRFVNSGTEATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDLEALE 186 (423)
T ss_pred EEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCCHHHHH
Confidence 9999999999986322 234568999999999997544332111110 0000000 0112233322111111
Q ss_pred cCCCC-CCCccEEEEc-CCCCccccCCC-HHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEec
Q 045431 198 PDLST-VARTDIIFFC-SPNNPTGAAAT-REQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSS 274 (433)
Q Consensus 198 ~~~~~-~~~~~~i~l~-~p~nPtG~~~~-~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S 274 (433)
..+.. ..++++|++. .|+| +|.+++ ++.+++|.++|++||+++|+||+|.++..+.. .....+...+| +.+
T Consensus 187 ~~i~~~~~~~aavi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~~-~~~~~~~~~pD----i~t 260 (423)
T TIGR00713 187 EVFEEYGEEIAGVIVEPVAGN-MGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVALG-GAQEYFGVEPD----LTT 260 (423)
T ss_pred HHHHHcCCcEEEEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCcc-hhHHHhCCCcc----hhh
Confidence 00111 1467788875 7788 798887 68999999999999999999999988744221 11111221233 237
Q ss_pred ccccccccccceeeeeccccccccCCcchhHHHHH---HHhhccCCCcHHHHHHHHHhcCcCCh-hHHHHHHHHHHHHHH
Q 045431 275 FSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNR---IVCTCFNGASNISQAGGLACLSPEGF-KAVHEVIGFYKENTD 350 (433)
Q Consensus 275 ~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~ 350 (433)
|||.++ +|+|+||++++++++ +.+.. ....++.+.++++++++.+.++.... ..+++.++..+..++
T Consensus 261 ~sK~l~-~G~pig~v~~~~~i~--------~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~~~ 331 (423)
T TIGR00713 261 LGKIIG-GGLPVGAFGGRREIM--------ERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDEEGVYTELDELAKRLAE 331 (423)
T ss_pred hhhhhc-CCCceeeeeEHHHHH--------HhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999998 999999999998875 43431 22334556899999988888763221 245677777777777
Q ss_pred HHHHHHhhcCCeee-cCCCccE-EEEECCCC---------Ch---HHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc
Q 045431 351 IIVETFNSLGFKVY-GGKNAPY-VWVQFPGR---------SS---WDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG 416 (433)
Q Consensus 351 ~l~~~l~~~g~~~~-~~~~g~~-~~~~~~~~---------~~---~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~ 416 (433)
.+.+.++++++... .+.++++ +++..+.. +. ..+...+++ +||.+.++ .| +.+|++...
T Consensus 332 ~l~~~~~~~~~~~~v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~-~~-----~~~~l~~~~ 404 (423)
T TIGR00713 332 GLSEVLEDTGIPHTVNRVGSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEMLD-KGVFLPPS-QF-----EACFLSAAH 404 (423)
T ss_pred HHHHHHHhcCCCeEEEeeccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHHH-CCeEEecC-Cc-----cceeeECCC
Confidence 78777877765542 2233332 33432211 11 135556665 69998654 22 357888878
Q ss_pred ChhHHHHHHHHHHHhhC
Q 045431 417 HRGNVLEACKRFKHLYK 433 (433)
Q Consensus 417 ~~~~l~~~l~~l~~~l~ 433 (433)
+++++++++++|.++++
T Consensus 405 t~~~i~~~~~~l~~~l~ 421 (423)
T TIGR00713 405 TEEDIENTIEAAEEVFA 421 (423)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999998763
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-23 Score=202.38 Aligned_cols=344 Identities=12% Similarity=0.096 Sum_probs=217.9
Q ss_pred HHHHhcCCCCceEEecCCCC--CC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEE
Q 045431 54 AAHMLKYPDAEVISLGIGDT--TE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIF 130 (433)
Q Consensus 54 ~~~~~~~~~~~~i~l~~g~~--~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~ 130 (433)
+......+++..||+..|.. .+ ..+|.+.+++.+++.+... . ...|. .....+|.+.+++.. ..+.++
T Consensus 30 G~~~~d~dG~~~lD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~-~-~~~~~-~~~~~~la~~l~~~~------~~~~v~ 100 (406)
T PRK12381 30 GSRLWDQQGKEYIDFAGGIAVNALGHAHPALREALNEQASKFWH-T-GNGYT-NEPVLRLAKKLIDAT------FADRVF 100 (406)
T ss_pred cCEEEeCCCCEEEEcCcCHhhccCCCCCHHHHHHHHHHHhhccc-c-cCccC-CHHHHHHHHHHHhhC------CCCeEE
Confidence 33344456778999977532 12 2578999999999875321 1 11231 222344555555442 347999
Q ss_pred EcCChHHHHHHHHHhc---------CCCCEEEEeCCCChhhhhhHHHhCCccccc-ccccccceEEEeecCccCCcccCC
Q 045431 131 VSDGAKCDISRLQIVF---------GSNVTMAVQDPSYPAYVDSSVIMGQTGEFQ-KDAEKYGKIEYMRCTAENGFFPDL 200 (433)
Q Consensus 131 ~~~G~~~al~~l~~l~---------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 200 (433)
+++++++|+.....+. ....+|+..+.+|++.......++....+. .++.....+..++.++...+...+
T Consensus 101 ~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l 180 (406)
T PRK12381 101 FCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALI 180 (406)
T ss_pred EcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHHHHHHhc
Confidence 9999999988632222 245789999999988765444433221111 011111122333332111111111
Q ss_pred CCCCCccEEEEcCCCCccccCC--CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccc
Q 045431 201 STVARTDIIFFCSPNNPTGAAA--TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKY 278 (433)
Q Consensus 201 ~~~~~~~~i~l~~p~nPtG~~~--~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~ 278 (433)
.+++.+|++ +|.||+|-++ +.+.+++|.++|++||+++|+||+|.++.+.+.+.......-.+| +.||||.
T Consensus 181 --~~~~aavii-EPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v~pD----i~t~sK~ 253 (406)
T PRK12381 181 --DDQTCAVIV-EPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPD----VLTTAKA 253 (406)
T ss_pred --cCCeeEEEE-eCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchhhhHhhCCCCC----EEEehhh
Confidence 135666665 8999998655 789999999999999999999999987766554332222221233 3599999
Q ss_pred ccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhh
Q 045431 279 AGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNS 358 (433)
Q Consensus 279 ~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 358 (433)
++ +|+|+||++++++++ +.+.......+.+.+++.+.++.+.++... -++++++++++.+++.+.|++
T Consensus 254 l~-gG~~ig~~~~~~~~~--------~~~~~~~~~~t~~~~pl~~aaa~a~l~~l~---~~~~~~~~~~~~~~l~~~L~~ 321 (406)
T PRK12381 254 LG-GGFPIGAMLTTEKCA--------SVMTVGTHGTTYGGNPLASAVAGKVLELIN---TPEMLNGVKQRHDWFVERLNT 321 (406)
T ss_pred hh-CCCceEEEEEcHHHH--------hhcCCCCCCCCCCCCHHHHHHHHHHHHHHh---hccHHHHHHHHHHHHHHHHHH
Confidence 98 999999999998875 444333334455678999998888775321 145678888889999888887
Q ss_pred cC--Cee-e-cCCCccEEEEECCCC---ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHH
Q 045431 359 LG--FKV-Y-GGKNAPYVWVQFPGR---SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFK 429 (433)
Q Consensus 359 ~g--~~~-~-~~~~g~~~~~~~~~~---~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~ 429 (433)
++ ..+ . ....|.++|+.++.. ....+... +.++||.+.+. +++.+||++ ..+++++++++++|.
T Consensus 322 l~~~~~~~~~vrg~Gl~~~~~l~~~~~~~~~~~~~~-l~~~Gv~v~~~------g~~~lRl~p~~~~t~~~i~~~~~~l~ 394 (406)
T PRK12381 322 INARYGLFSEIRGLGLLIGCVLNAEYAGKAKQISQE-AAKAGVMVLIA------GPNVVRFAPALNISEEEITTGLDRFA 394 (406)
T ss_pred HHhhCCCEEEEecCeEEEEEEecCchhhHHHHHHHH-HHHCCcEEeeC------CCCEEEEeCCccCCHHHHHHHHHHHH
Confidence 63 221 1 123578889988642 22344444 55569999753 246899985 468999999999998
Q ss_pred Hhh
Q 045431 430 HLY 432 (433)
Q Consensus 430 ~~l 432 (433)
+++
T Consensus 395 ~~l 397 (406)
T PRK12381 395 RAC 397 (406)
T ss_pred HHH
Confidence 875
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-24 Score=203.55 Aligned_cols=299 Identities=14% Similarity=0.167 Sum_probs=205.6
Q ss_pred ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCC--CCcEEEcCChHHHHHH-HHHhcC------
Q 045431 77 IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIE--EGDIFVSDGAKCDISR-LQIVFG------ 147 (433)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~--~~~i~~~~G~~~al~~-l~~l~~------ 147 (433)
++..+.+.+...+. .....|+...+..++++++++|+.+.++++ ++++++|+|+++++.+ +..+..
T Consensus 11 ~~~~~~~~~~~~~n-----~~~~~y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~ 85 (345)
T cd06450 11 PPALLLEMLTSAKN-----AIDFTWDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRL 85 (345)
T ss_pred HHHHHHHHHHHhcC-----CCCcccccCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhh
Confidence 34445555555543 233458888899999999999998855653 5689999999999886 444431
Q ss_pred ------CC--CEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CC------CccEEE
Q 045431 148 ------SN--VTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VA------RTDIIF 210 (433)
Q Consensus 148 ------~g--d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~------~~~~i~ 210 (433)
++ +.|++++++|..+...+..+| .+++.++.++++..+.+ +++ .+ ++++++
T Consensus 86 ~~~~~~~~~~~~v~~~~~~h~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~ 153 (345)
T cd06450 86 KAGGGRGIDKLVIVCSDQAHVSVEKAAAYLD------------VKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVV 153 (345)
T ss_pred hcccccccCCeEEEEcCcchhHHHHHHHHHh------------cCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEE
Confidence 33 478889999999888888777 47788887654332222 221 12 677888
Q ss_pred EcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccceeee
Q 045431 211 FCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWT 289 (433)
Q Consensus 211 l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l 289 (433)
+++|+||||.+.+ +++|.++|+++|+++++|++|+.+..... .... .....+...+..|++|+++ ++.++|++
T Consensus 154 ~~~~~~~tG~~~~---~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~--~~~~~~~d~~~~s~~K~l~-~p~g~g~~ 227 (345)
T cd06450 154 ATAGTTDTGAIDP---LEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHL--DFGIERVDSISVDPHKYGL-VPLGCSAV 227 (345)
T ss_pred EecccCCCCCCCC---HHHHHHHHHHhCCeEEEechhhHHHhhChhhHHH--hcCccccCEEEEchhHhhC-CCcchHHH
Confidence 8899999999866 88999999999999999999987654321 1111 1111222356779999885 77889987
Q ss_pred eccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCC
Q 045431 290 VIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKN 368 (433)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~ 368 (433)
+++ .+.+.++..++.. ..+++..++..+.++++.+.|+++ ++.+..+..
T Consensus 228 ~~~---------------------------~~~~~~~l~~l~~---~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 277 (345)
T cd06450 228 LVR---------------------------ALKLWATLRRFGR---DGYGEHIDRIVDLAKYLAELIRADPGFELLGEPN 277 (345)
T ss_pred HHH---------------------------HHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCc
Confidence 654 3344444555542 345777888889999999999887 777665445
Q ss_pred ccEEEEECCC-----CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec--c-ChhHHHHHHHHHHHh
Q 045431 369 APYVWVQFPG-----RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF--G-HRGNVLEACKRFKHL 431 (433)
Q Consensus 369 g~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~-~~~~l~~~l~~l~~~ 431 (433)
+.++.+.+++ ....++.+.+. ++|+.+.++..+. .++++|+++. . +.++++++++.|+++
T Consensus 278 ~~iv~f~~~~~~~~~~~~~~i~~~L~-~~g~~~~~~~~~~--~~~~lRis~~~~~~t~~di~~l~~~l~~~ 345 (345)
T cd06450 278 LSLVCFRLKPSVKLDELNYDLSDRLN-ERGGWHVPATTLG--GPNVLRFVVTNPLTTRDDADALLEDIERA 345 (345)
T ss_pred eeEEEEEECCcchhhHHHHHHHHHHH-hcCCEEEEeeEEC--CeEEEEEEecCCCCCHHHHHHHHHHHHhC
Confidence 5566666654 23456666665 4466555554443 4578999963 3 789999999999763
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.8e-23 Score=200.09 Aligned_cols=341 Identities=12% Similarity=0.053 Sum_probs=214.6
Q ss_pred HhcCCCCceEEecCCCCCCC---ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcC
Q 045431 57 MLKYPDAEVISLGIGDTTEP---IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSD 133 (433)
Q Consensus 57 ~~~~~~~~~i~l~~g~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~ 133 (433)
....+++..+|+..|..... .++.+.+++.+++.+... ...+.......+|.+.++++. + .+.+++++
T Consensus 35 ~~d~~g~~~lD~~~~~~~~~~Gh~~~~i~~a~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~----~--~~~~~~~~ 105 (401)
T PRK00854 35 VWDTDGNRYLDCLSAYSAVNQGHCHPKILAAMVEQAGRLTL---TSRAFRNDQLAPLYEELAALT----G--SHKVLPMN 105 (401)
T ss_pred EEECCCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhccc---cccccCCHHHHHHHHHHHhhC----C--CCEEEEeC
Confidence 34456678899877754333 488999999999986532 111112334556667776653 3 35888888
Q ss_pred ChHHHHHH-HHHhc---------CCC-CEEEEeCCCChhhhhhHHHhCCcccc-cccccccceEEEeecCccCCcccCCC
Q 045431 134 GAKCDISR-LQIVF---------GSN-VTMAVQDPSYPAYVDSSVIMGQTGEF-QKDAEKYGKIEYMRCTAENGFFPDLS 201 (433)
Q Consensus 134 G~~~al~~-l~~l~---------~~g-d~Vl~~~p~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (433)
++++|+.. +..+. .+| ++|++.+-+|++........+..... ..++....++..++..+...+...+
T Consensus 106 SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i- 184 (401)
T PRK00854 106 SGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPFGDAEALEAAI- 184 (401)
T ss_pred CcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeCCCCHHHHHHHh-
Confidence 88888886 43332 123 67888887776654333333321110 0011111234444433211111111
Q ss_pred CCCCccEEEEcCCCCccccCCCH-HHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccc
Q 045431 202 TVARTDIIFFCSPNNPTGAAATR-EQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAG 280 (433)
Q Consensus 202 ~~~~~~~i~l~~p~nPtG~~~~~-~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~ 280 (433)
.+++++|++++|+||+|.+++. +++++|.++|++||+++|+||+|.++.+.+...........+|.++ ++|.++
T Consensus 185 -~~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~~~~~g~~~D~~~----~~K~l~ 259 (401)
T PRK00854 185 -TPNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGIEADVTL----IGKALS 259 (401)
T ss_pred -CCCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhHHhhcCCCCCEEE----eccccc
Confidence 2578899999999999999974 5699999999999999999999987655443211111111234222 479997
Q ss_pred ccc-cceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc
Q 045431 281 FTG-VRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 281 ~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 359 (433)
.| +|+||++++++++ +.+.......+.+.+++.+.++.+.|+.... +...+.++++.+++.+.|+++
T Consensus 260 -gg~~~ig~v~~~~~~~--------~~l~~~~~~~t~~~~~~~~aa~~a~L~~l~~---~~~~~~~~~~~~~l~~~L~~~ 327 (401)
T PRK00854 260 -GGFYPVSAVLSNSEVL--------GVLKPGQHGSTFGGNPLACAVARAALKVLTE---EGMIENAAEMGAYFLEGLRSI 327 (401)
T ss_pred -CCccCeEEEEEcHHHH--------hcccCCCCCCCCCcCHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHHHhh
Confidence 56 7999999998875 3333222333455788999988888863211 335678888889999999887
Q ss_pred CCee---ecCCCccEEEEEC-CC-CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 360 GFKV---YGGKNAPYVWVQF-PG-RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 360 g~~~---~~~~~g~~~~~~~-~~-~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
+... ..+ .|.++.+.+ +. ....++.+.|+++ ||.+.+. +.+++|++. ..+++++++++++|++++
T Consensus 328 ~~~~~~~~~g-~g~~~~i~~~~~~~~~~~~~~~L~~~-GV~v~~~------~~~~lR~~p~~~~t~e~i~~~i~~l~~~l 399 (401)
T PRK00854 328 RSNIVREVRG-RGLMLAVELEPEAGGARQYCEALKER-GLLAKDT------HDHTIRLAPPLVITREQVDWALEQIAKVL 399 (401)
T ss_pred ccCceEEEec-cceEEEEEEecCchhHHHHHHHHHHC-CeEEecC------CCCEEEEeCCcccCHHHHHHHHHHHHHHh
Confidence 4322 233 344444444 32 3455677776655 9999642 246899994 679999999999999876
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-23 Score=189.71 Aligned_cols=336 Identities=16% Similarity=0.218 Sum_probs=235.8
Q ss_pred EEecCCCCCCCChHHHHHHHHHHHhhc-ccCCCCCCCCC--CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-
Q 045431 66 ISLGIGDTTEPIPEVITSALAKRSYAL-STQEGYSGYGA--EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR- 141 (433)
Q Consensus 66 i~l~~g~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~Y~~--~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~- 141 (433)
|-|+.+.. -|+.+++.+++...+... ++..+.+.|+. .....+-|+.+|+.+ ++++++|++|+|++++.++
T Consensus 3 iYlD~~AT-Tp~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~ll----ga~~~eIiFTSG~TEsnNla 77 (386)
T COG1104 3 IYLDNAAT-TPVDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLL----GADPEEIIFTSGATESNNLA 77 (386)
T ss_pred cccccccc-CCCCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHh----CCCCCeEEEecCCcHHHHHH
Confidence 44444443 367789999999988766 55566666653 345677788888887 9999999999999999996
Q ss_pred HHHh--c----CCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEEEEc
Q 045431 142 LQIV--F----GSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIFFC 212 (433)
Q Consensus 142 l~~l--~----~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~ 212 (433)
|... . +.|.+|++..-.|+.+.+.++.+..+| .++.+++++.++-..++ +++ .+++.+|.++
T Consensus 78 I~g~~~a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g---------~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim 148 (386)
T COG1104 78 IKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQG---------FEVTYLPVDSNGLVDLEQLEEALRPDTILVSIM 148 (386)
T ss_pred HHhhHHhhhcccCCCeEEEcccccHHHHHHHHHHHhcC---------CeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEE
Confidence 5542 2 257899999999999999999884334 48999999886544443 222 3678888888
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecc
Q 045431 213 SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIP 292 (433)
Q Consensus 213 ~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~ 292 (433)
..||-||++.| +++|.++|+++++++.+|.+++. +.-|..+..+. -.+..-|-+|..|..| +|+++.+
T Consensus 149 ~aNnE~G~IQp---I~ei~~i~k~~~i~fHvDAvQa~---Gkipi~~~~~~----vD~ls~SaHK~~GpkG--iGaLyv~ 216 (386)
T COG1104 149 HANNETGTIQP---IAEIGEICKERGILFHVDAVQAV---GKIPIDLEELG----VDLLSFSAHKFGGPKG--IGALYVR 216 (386)
T ss_pred ecccCeeeccc---HHHHHHHHHHcCCeEEEehhhhc---CceeccccccC----cceEEeehhhccCCCc--eEEEEEC
Confidence 99999999988 88899999999999999999883 11144444332 1255667799999778 8999886
Q ss_pred ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc--CCeeecC---C
Q 045431 293 KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL--GFKVYGG---K 367 (433)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g~~~~~~---~ 367 (433)
+..... .+..--.+.......+.+.+...+...+++ ...+.++....++...++++.+.|.+. ++.+.+. .
T Consensus 217 ~~~~~~---p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~-~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~r 292 (386)
T COG1104 217 PGVRLE---PLIHGGGQERGLRSGTENVPGIVGFGKAAE-IAVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPR 292 (386)
T ss_pred CCCccC---ceeccCcCCCCCCCCCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccC
Confidence 655210 000000011111122234444444455554 233456778888999999999999875 4444432 2
Q ss_pred CccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCC-----------------CCCeEEEee--ccChhHHHHHHHHH
Q 045431 368 NAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPG-----------------GEGFIRVSA--FGHRGNVLEACKRF 428 (433)
Q Consensus 368 ~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~-----------------~~~~iRi~~--~~~~~~l~~~l~~l 428 (433)
-...+.+.+++...+.+... ++.+||.+..|+.|... ..+.+|||| .++++|++.+++.|
T Consensus 293 lP~~~~~~f~gv~gE~ll~~-L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l 371 (386)
T COG1104 293 LPNILNFSFPGVEGESLLLA-LDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEAL 371 (386)
T ss_pred CCCeEEEEeCCCcHHHHHHh-ccccCeEEeccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHH
Confidence 23567788888777666555 45669999999999632 136799998 45899999999999
Q ss_pred HHhh
Q 045431 429 KHLY 432 (433)
Q Consensus 429 ~~~l 432 (433)
++++
T Consensus 372 ~~~i 375 (386)
T COG1104 372 KEII 375 (386)
T ss_pred HHHH
Confidence 8875
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-23 Score=200.69 Aligned_cols=335 Identities=14% Similarity=0.138 Sum_probs=212.1
Q ss_pred EEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCC----CCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH
Q 045431 66 ISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGY----GAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR 141 (433)
Q Consensus 66 i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y----~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~ 141 (433)
+.|+.+... +.|+.+.+++.+.+...........+ .......++|+.+++++ ++++++|++|+|+++++.+
T Consensus 5 ~yld~aa~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----g~~~~~v~~~~g~t~a~~~ 79 (402)
T TIGR02006 5 IYLDYAATT-PVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELI----GADSREIVFTSGATESNNL 79 (402)
T ss_pred EEeeCCcCC-CCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHh----CCCCCeEEEeCCHHHHHHH
Confidence 566666654 67888999988877432110110011 11134566788888886 8888999999999999986
Q ss_pred -HHHh----cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEEEEcC
Q 045431 142 -LQIV----FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIFFCS 213 (433)
Q Consensus 142 -l~~l----~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~~ 213 (433)
+..+ .++||+|++..++|+.+...+..+...+ .+++.++.++++.++.+ +++ .++++++++++
T Consensus 80 ~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~g---------~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~v~~ 150 (402)
T TIGR02006 80 AIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLEREG---------FEVTYLPPKSNGLIDLEELKAAIRDDTILVSIMH 150 (402)
T ss_pred HHHHHHHhhcCCCCEEEECCCccHHHHHHHHHHHhcC---------CEEEEEccCCCCcCCHHHHHHhcCCCCEEEEEEC
Confidence 4443 3689999999999998776655442222 37778877644322222 222 25788999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccc
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPK 293 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~ 293 (433)
++||||.+.+ +++|.++|+++|+++++|++++.... +..+... +..+++.|++|.+|.+| +|++++++
T Consensus 151 ~~n~tG~~~~---~~~I~~l~~~~g~~livD~a~a~g~~---~~~~~~~----~~D~~~~s~~K~~gp~G--~G~l~~~~ 218 (402)
T TIGR02006 151 VNNEIGVIQD---IAAIGEICRERKVFFHVDAAQSVGKI---PINVNEL----KVDLMSISGHKIYGPKG--IGALYVRR 218 (402)
T ss_pred CCcCceeccc---HHHHHHHHHHcCCEEEEEcchhcCCc---ccCcccc----CCCEEEEehhhhcCCCc--eEEEEEcc
Confidence 9999999988 77889999999999999999973211 2223222 22378889999887446 89998887
Q ss_pred cccccCCcchhH-HHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCC--Cc
Q 045431 294 ELLFSDGFPVAK-DFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGK--NA 369 (433)
Q Consensus 294 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~--~g 369 (433)
+......+.... ...+ .....+.+.....+..++++.. ..+++...+++++.++.+.+.|+++ ++.+..+. ..
T Consensus 219 ~~~~~~~~~~~g~~~~~--~~~~gt~~~~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~~~~~~ 295 (402)
T TIGR02006 219 KPRVRLEALIHGGGHER--GMRSGTLPTHQIVGMGEAFRIA-KEEMAQDTAHVLALRDRLLNGIKSIEEVYLNGDLEHRV 295 (402)
T ss_pred CCCCCCCceecCCCccC--CccCCCccHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccC
Confidence 653211110000 0000 0111223333333333444311 1346777888999999999999876 66654321 11
Q ss_pred c-EEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCC-----------------CCCeEEEee--ccChhHHHHHHHHHH
Q 045431 370 P-YVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPG-----------------GEGFIRVSA--FGHRGNVLEACKRFK 429 (433)
Q Consensus 370 ~-~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~-----------------~~~~iRi~~--~~~~~~l~~~l~~l~ 429 (433)
. .+.+.++.....++...+ .++.+..|..|... ..+.+|+|+ +++++|++++++.|+
T Consensus 296 p~~~~v~f~~~~~~~~~~~l---~~i~v~~G~~c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~l~~~l~ 372 (402)
T TIGR02006 296 PGNLNVSFNYVEGESLIMAL---KDLAVSSGSACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEEEIDYAVKLVK 372 (402)
T ss_pred CCeEEEEEeCcCHHHHHHhc---CCEEEechhhcCCCCCCccHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHH
Confidence 1 123444443444444332 38888888776431 137899996 568999999999998
Q ss_pred Hhh
Q 045431 430 HLY 432 (433)
Q Consensus 430 ~~l 432 (433)
+++
T Consensus 373 ~~~ 375 (402)
T TIGR02006 373 SAI 375 (402)
T ss_pred HHH
Confidence 875
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.8e-23 Score=191.18 Aligned_cols=335 Identities=16% Similarity=0.178 Sum_probs=238.6
Q ss_pred CCceEEecCCCC-CCCChHHHHHHHHHHHhhcccCCCCC--CCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHH
Q 045431 62 DAEVISLGIGDT-TEPIPEVITSALAKRSYALSTQEGYS--GYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCD 138 (433)
Q Consensus 62 ~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~~~~~~~~--~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~a 138 (433)
+..++||+++++ .+...+.+.+++.+++.+++.....+ -++...-..+|.+.||+|+ + .++.+++++|-.+.
T Consensus 38 ~~~~~nf~SNdYLGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~----g-~e~al~f~SGy~AN 112 (388)
T COG0156 38 GRKVLNFCSNDYLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFL----G-AEAALLFSSGFVAN 112 (388)
T ss_pred CceeEeeeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHh----C-CCcEEEEcccchhH
Confidence 467999999997 56778889999999999865323322 3555666778888999987 5 44789999999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC--CC--CccEEEEcCC
Q 045431 139 ISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST--VA--RTDIIFFCSP 214 (433)
Q Consensus 139 l~~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~i~l~~p 214 (433)
+.++.++++++|.|+.++-.|.+..+.++..+ .+.+.+.+++-..+...+++ .. +.++|+...-
T Consensus 113 ~~~i~~l~~~~dli~~D~lnHASiidG~rls~------------a~~~~f~HnD~~~Le~~l~~~~~~~~~~~~IvtegV 180 (388)
T COG0156 113 LGLLSALLKKGDLIFSDELNHASIIDGIRLSR------------AEVRRFKHNDLDHLEALLEEARENGARRKLIVTEGV 180 (388)
T ss_pred HHHHHHhcCCCcEEEEechhhhhHHHHHHhCC------------CcEEEecCCCHHHHHHHHHhhhccCCCceEEEEecc
Confidence 99999999999999999999999999999777 46777776432222111222 11 2344443344
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCC--CcceEEEecccccccccccceeeeecc
Q 045431 215 NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGA--KEVAIETSSFSKYAGFTGVRLGWTVIP 292 (433)
Q Consensus 215 ~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~--~~~vi~i~S~sK~~~~~G~r~G~l~~~ 292 (433)
-.-.|.+-+ +++|++++++|++++++||+|+-..+++....+.+..+. .+..|+++||||.+|..| ||+.++
T Consensus 181 fSMdGdiAp---L~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs~G---g~v~g~ 254 (388)
T COG0156 181 FSMDGDIAP---LPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSG---GYIAGS 254 (388)
T ss_pred ccCCCCcCC---HHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhcccC---ceeeCc
Confidence 556788777 899999999999999999999976666554444433222 344799999999999888 999999
Q ss_pred ccccccCCcchhHHHHHH-HhhccC-CCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCcc
Q 045431 293 KELLFSDGFPVAKDFNRI-VCTCFN-GASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAP 370 (433)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~ 370 (433)
..++ +.+... ....+. ..++...+++.+.++... .-..++++++++...+...+...|+.+.+ ....
T Consensus 255 ~~~~--------d~L~~~ar~~ifStalpP~~aaa~~~al~~l~--~~~~~r~~L~~~~~~~~~~~~~~~~~~~~-s~s~ 323 (388)
T COG0156 255 AALI--------DYLRNRARPFIFSTALPPAVAAAALAALRILE--EGPERRERLQELAAFFRSLLKALGLVLLP-SESP 323 (388)
T ss_pred HHHH--------HHHHHhCCceeccCCCCHHHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHhcCCccCC-CCCC
Confidence 8885 444332 222222 234444444455554221 22667888889999988777777877643 4667
Q ss_pred EEEEECCC-CChHHHHHHHHHcCCeEecCCCCCC-CCCCCeEEEee--ccChhHHHHHHHHHHHh
Q 045431 371 YVWVQFPG-RSSWDVFSEILEKTHVVTTPGSGFG-PGGEGFIRVSA--FGHRGNVLEACKRFKHL 431 (433)
Q Consensus 371 ~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~-~~~~~~iRi~~--~~~~~~l~~~l~~l~~~ 431 (433)
.+.+.+.. ....+....++++ ||.+.+...-. +.+...+|+++ ..++++|+.+++.|.++
T Consensus 324 I~pv~~gd~~~a~~~s~~l~~~-Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 324 IIPVILGDEERALEASRALLEE-GIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSEV 387 (388)
T ss_pred eeeeEeCCHHHHHHHHHHHHHC-CeeEeeecCCCCCCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence 77777764 3456667777776 99998765433 44567899996 44899999999999875
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-22 Score=195.77 Aligned_cols=334 Identities=14% Similarity=0.119 Sum_probs=201.0
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHh-hcccCCCCCCCCC-CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSY-ALSTQEGYSGYGA-EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR 141 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~Y~~-~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~ 141 (433)
..|+|..+++. .|+.+.+++...+. .+........|.. ..-...+.+...+.+++.++++..+|++++|+ +++.+
T Consensus 26 ~~~~l~~~~n~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~i~~~sgt-~al~~ 102 (416)
T PRK00011 26 EHIELIASENF--VSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAEYANVQPHSGS-QANAA 102 (416)
T ss_pred cCeeeecccCc--CCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceeeecCCch-HHHHH
Confidence 47999988865 68889988877653 2211111112211 11122222211223333347777778777775 56665
Q ss_pred -HHHhcCCCCEEEEeCCCChhhhhhHH--HhCCcccccccccccceEEEeecCccCCcccCC---CC---CCCccEEEEc
Q 045431 142 -LQIVFGSNVTMAVQDPSYPAYVDSSV--IMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDL---ST---VARTDIIFFC 212 (433)
Q Consensus 142 -l~~l~~~gd~Vl~~~p~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~i~l~ 212 (433)
+..++++||+|+++.|+|.++..... ..+..+ .+++.++.+.+. +..++ ++ ..++++|+++
T Consensus 103 ~l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g---------~~~~~~~~~~~~-~~~d~~~l~~~i~~~~~k~v~~~ 172 (416)
T PRK00011 103 VYFALLKPGDTILGMDLAHGGHLTHGSPVNFSGKL---------YNVVSYGVDEET-GLIDYDEVEKLALEHKPKLIIAG 172 (416)
T ss_pred HHHHhcCCCCEEEEeccccCCccccccccccccce---------eeEeecCcCccc-CCcCHHHHHHHHHhcCCCEEEEC
Confidence 67788999999999999976532211 111111 256666665321 22222 21 1368888887
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccc-cccCCC-CCcccccCCCCcceEEEecccccccccccceeeee
Q 045431 213 SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYAL-YISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTV 290 (433)
Q Consensus 213 ~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~-~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~ 290 (433)
+++|| ...+ +++|.++|++||+++|+|++|+. +.+.+. +..+. ...++++|+||++ +|+|.||++
T Consensus 173 ~~~~~--~~~~---~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~------~~di~~~S~~K~l--~g~~gg~i~ 239 (416)
T PRK00011 173 ASAYS--RPID---FKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP------HADVVTTTTHKTL--RGPRGGLIL 239 (416)
T ss_pred CCcCC--CccC---HHHHHHHHHHcCCEEEEECcchhcccccCccCCCCC------CCcEEEecCCcCC--CCCCceEEE
Confidence 66554 4444 78999999999999999999863 222221 22221 1237899999976 688999999
Q ss_pred ccc-cccccCCcchhHHHHHHHhhccCCCc-HHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeec-CC
Q 045431 291 IPK-ELLFSDGFPVAKDFNRIVCTCFNGAS-NISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYG-GK 367 (433)
Q Consensus 291 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~-~~ 367 (433)
+++ +++ +.+.........+.+ ...+.++..++.....+++++..++++++++++.+.|++.|+.+.. ..
T Consensus 240 ~~~~~~~--------~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 311 (416)
T PRK00011 240 TNDEELA--------KKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAERGFRVVSGGT 311 (416)
T ss_pred eCCHHHH--------HHHHHHhCccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCeeeecCC
Confidence 974 553 555443322222222 2222222222221112346778889999999999999998887653 22
Q ss_pred CccEEEEECCCC--ChHHHHHHHHHcCCeEecCCC-CC---CCCCCCeEEEee------ccChhHHHHHHHHHHHhh
Q 045431 368 NAPYVWVQFPGR--SSWDVFSEILEKTHVVTTPGS-GF---GPGGEGFIRVSA------FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 368 ~g~~~~~~~~~~--~~~~~~~~l~~~~gi~v~~g~-~f---~~~~~~~iRi~~------~~~~~~l~~~l~~l~~~l 432 (433)
.++++|+.+++. +..++.. .++++||.+..+. .+ .+..+..+|++. ..++++++..++.|++++
T Consensus 312 ~~~~~~i~~~~~~~~~~~~~~-~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~~~~ 387 (416)
T PRK00011 312 DNHLVLVDLRSKGLTGKEAEA-ALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEIAELIADVL 387 (416)
T ss_pred CCeEEEEeCcccCCCHHHHHH-HHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHHHHHHHHHHHH
Confidence 458899998632 4455554 4556699997432 11 122345699963 236899999999998875
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-23 Score=200.34 Aligned_cols=341 Identities=9% Similarity=0.063 Sum_probs=205.1
Q ss_pred hcCCCCceEEecCCCCCCC---ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCC
Q 045431 58 LKYPDAEVISLGIGDTTEP---IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDG 134 (433)
Q Consensus 58 ~~~~~~~~i~l~~g~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G 134 (433)
...+++.++|+..|..... .+|.+.+++.+.+....... ..+ ......++++.++++ .+ .+.++++++
T Consensus 26 ~d~dg~~~lD~~~~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~--~~~-~~~~~~~~~~~l~~~----~~--~~~~~~~~S 96 (400)
T PTZ00125 26 WDVEGKKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTLTS--RAF-YNDVLGLAEKYITDL----FG--YDKVLPMNS 96 (400)
T ss_pred EeCCCCEEEEcccCHhhccCCcCCHHHHHHHHHHHHhccccc--ccc-cCHHHHHHHHHHHhC----CC--CCEEEEeCC
Confidence 3445678999987754332 68899999999887543111 111 112233444444443 23 357888888
Q ss_pred hHHHHHH-HHHhc----------CCCCEEEEeCCCChhhhhhHHHh-CCcccccccccccceEEEeecCccCCcccCCCC
Q 045431 135 AKCDISR-LQIVF----------GSNVTMAVQDPSYPAYVDSSVIM-GQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST 202 (433)
Q Consensus 135 ~~~al~~-l~~l~----------~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (433)
+++++.. +.... ..+++|++.+-+|++........ +.......+......+..++..+...+...+.
T Consensus 97 Gs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~- 175 (400)
T PTZ00125 97 GAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYNDVEALEKLLQ- 175 (400)
T ss_pred cHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCCCCHHHHHHHhC-
Confidence 8888775 43321 13578888888887754333222 21111000110001223333321111111121
Q ss_pred CCCccEEEEcCCCCccccCCC-HHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccc
Q 045431 203 VARTDIIFFCSPNNPTGAAAT-REQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGF 281 (433)
Q Consensus 203 ~~~~~~i~l~~p~nPtG~~~~-~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~ 281 (433)
.+++++|++..++||||.+++ .+.+++|.++|++||+++|+||+|.++...+.+.........+| ++ ++||.++
T Consensus 176 ~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~~pd-~~---~~sK~l~- 250 (400)
T PTZ00125 176 DPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVKPD-IV---LLGKALS- 250 (400)
T ss_pred CCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCCCCC-EE---EEccccc-
Confidence 257888888777999999986 55699999999999999999999987765553222111111123 22 5789997
Q ss_pred cc-cceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-
Q 045431 282 TG-VRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL- 359 (433)
Q Consensus 282 ~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 359 (433)
+| +|+||++++++++ +.+.......+.+.+++.+.++.+.++.... +...++.+++.+.+.+.|++.
T Consensus 251 ~g~~~ig~v~~~~~~~--------~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~~---~~~~~~~~~~~~~l~~~l~~l~ 319 (400)
T PTZ00125 251 GGLYPISAVLANDDVM--------LVIKPGEHGSTYGGNPLACAVAVEALEVLKE---EKLAENAQRLGEVFRDGLKELL 319 (400)
T ss_pred CCCcCcEEEEEcHHHH--------hhccCCCCCCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHH
Confidence 56 5999999998875 3333322334455788888888776652111 122344445555555555543
Q ss_pred ---CC-eeecCCCccEEEEECCC---CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe--eccChhHHHHHHHHHHH
Q 045431 360 ---GF-KVYGGKNAPYVWVQFPG---RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS--AFGHRGNVLEACKRFKH 430 (433)
Q Consensus 360 ---g~-~~~~~~~g~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~ 430 (433)
++ ....+ .|.++|+.++. ....++...+++ +||.+.|+ +.+++||+ +..+++++++++++|.+
T Consensus 320 ~~~~~~~~~~~-~g~~~~v~~~~~~~~~~~~~~~~l~~-~Gv~v~~~------~~~~lRi~~~~~~~~~~i~~~l~~l~~ 391 (400)
T PTZ00125 320 KKSPWVKEIRG-KGLLNAIVFDHSDGVNAWDLCLKLKE-NGLLAKPT------HDNIIRFAPPLVITKEQLDQALEIIKK 391 (400)
T ss_pred hcCCCeEEEec-ccEEEEEEEccCcchHHHHHHHHHHH-CCeEEeec------CCCEEEEECCccCCHHHHHHHHHHHHH
Confidence 32 22333 67888888763 234556666664 59999875 24789999 45799999999999988
Q ss_pred hh
Q 045431 431 LY 432 (433)
Q Consensus 431 ~l 432 (433)
++
T Consensus 392 ~l 393 (400)
T PTZ00125 392 VL 393 (400)
T ss_pred HH
Confidence 75
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.1e-23 Score=197.90 Aligned_cols=339 Identities=13% Similarity=0.083 Sum_probs=196.0
Q ss_pred HhcCCCCceEEecCCCC-CCCChHHHHHHHHHHHhhcccCCCC-C--CCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEc
Q 045431 57 MLKYPDAEVISLGIGDT-TEPIPEVITSALAKRSYALSTQEGY-S--GYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVS 132 (433)
Q Consensus 57 ~~~~~~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~~~~~~~-~--~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~ 132 (433)
....++...+||+.+.+ .+..++++.+++.+++.+.+..... + .+ ......++++.+++++ +. +.++++
T Consensus 40 ~~d~~g~~~ld~~s~~~lgl~~~p~v~~A~~~~l~~~g~~~~~~~~~~~-~~~~~~~l~~~la~~~----~~--~~~~~~ 112 (402)
T PRK07505 40 ITLADGHTFVNFVSCSYLGLDTHPAIIEGAVDALKRTGSLHLSSSRTRV-RSQILKDLEEALSELF----GA--SVLTFT 112 (402)
T ss_pred EEecCCceEEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCCccchhh-hhHHHHHHHHHHHHHh----CC--CEEEEC
Confidence 33445677899976543 3367899999999999864310111 1 12 1234566777777665 54 667777
Q ss_pred CChHHHHHHHHH----hcCCCC-EEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCCCCcc
Q 045431 133 DGAKCDISRLQI----VFGSNV-TMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTD 207 (433)
Q Consensus 133 ~G~~~al~~l~~----l~~~gd-~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (433)
+|+.+...++.. .+.+|+ .|++.+..|++...........+ .+++.++..+...+...+ .++++
T Consensus 113 sG~~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~~~---------~~v~~~~~~d~~~l~~~~--~~~~~ 181 (402)
T PRK07505 113 SCSAAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICADE---------TEVETIDHNDLDALEDIC--KTNKT 181 (402)
T ss_pred ChHHHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhhcC---------CeEEEeCCCCHHHHHHHH--hcCCC
Confidence 776655444422 223232 35566655544221101000000 256666653221111111 23568
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccC--CCCCcccccCC-CCcceEEEeccccccccccc
Q 045431 208 IIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISD--DNPRSIFEIPG-AKEVAIETSSFSKYAGFTGV 284 (433)
Q Consensus 208 ~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~--~~~~~~~~~~~-~~~~vi~i~S~sK~~~~~G~ 284 (433)
++++++|+||||.+++ +++|.++|++|++++|+||+|+...+. +.......+.. .++++++++|+||.+|.+|
T Consensus 182 ~~vl~~p~~~~G~~~~---~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~G- 257 (402)
T PRK07505 182 VAYVADGVYSMGGIAP---VKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGASG- 257 (402)
T ss_pred EEEEEecccccCCcCC---HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhccC-
Confidence 8999999999999999 688888899999999999999643332 22222222322 3678899999999998666
Q ss_pred ceeeeec-cccccccCCcchhHHHHHHHhhccC--CCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCC
Q 045431 285 RLGWTVI-PKELLFSDGFPVAKDFNRIVCTCFN--GASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGF 361 (433)
Q Consensus 285 r~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 361 (433)
||+++ +++++ +.+......... .++.++..++.+.++....+++.++.+.++++.+.+...+..
T Consensus 258 --g~~~~~~~~~~--------~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~--- 324 (402)
T PRK07505 258 --GVIMLGDAEQI--------ELILRYAGPLAFSQSLNVAALGAILASAEIHLSEELDQLQQKLQNNIALFDSLIPT--- 324 (402)
T ss_pred --eEEEeCCHHHH--------HHHHHhCCCceeCCCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHh---
Confidence 88765 44553 445443322222 234566666666654111123344555565655544333221
Q ss_pred eeecCCCccEEEEECCCC-ChHHHHHHHHHcCCeEecCCCCCCC-CCCCeEEEeec--cChhHHHHHHHHHHHhh
Q 045431 362 KVYGGKNAPYVWVQFPGR-SSWDVFSEILEKTHVVTTPGSGFGP-GGEGFIRVSAF--GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 362 ~~~~~~~g~~~~~~~~~~-~~~~~~~~l~~~~gi~v~~g~~f~~-~~~~~iRi~~~--~~~~~l~~~l~~l~~~l 432 (433)
. ......++.++.++.. ...++...|++ +||.+.++..+.. .+++++||+.. .+++++++++++|++++
T Consensus 325 ~-~~g~~~~i~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~~p~~~~~~~~lRi~~~~~~t~eei~~~~~~l~~~l 397 (402)
T PRK07505 325 E-QSGSFLPIRLIYIGDEDTAIKAAKQLLD-RGFYTSPVFFPVVAKGRAGLRIMFRASHTNDEIKRLCSLLKEIL 397 (402)
T ss_pred c-CCCCCCCEEEEEeCCHHHHHHHHHHHHH-CCCeEeeecCCCCCCCCceEEEecCccCCHHHHHHHHHHHHHHH
Confidence 1 1112223334444321 34566677665 5999998743321 23468999964 59999999999999876
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.1e-23 Score=195.50 Aligned_cols=338 Identities=10% Similarity=0.106 Sum_probs=207.4
Q ss_pred hcCCCCceEEecCCCC--CC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCC
Q 045431 58 LKYPDAEVISLGIGDT--TE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDG 134 (433)
Q Consensus 58 ~~~~~~~~i~l~~g~~--~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G 134 (433)
...+++..||+..|.. .+ ..+|.+.+++.+++.+... ...+ ...+....+|+.+.... ..+.++++++
T Consensus 10 ~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~---~~~~----~~~~~~~~la~~l~~~~--~~~~v~f~~s 80 (382)
T PLN00144 10 YDVEGKEYLDMAAGIAVNALGHGDPDWVKAVAEQAGTLAH---VSNV----YHTIPQVELAKRLVASS--FADRVFFCNS 80 (382)
T ss_pred EeCCCCEEEECCcCHHhccCCCCCHHHHHHHHHHHHhcCC---cccc----ccCHHHHHHHHHHHhcC--CCCeEEEeCC
Confidence 3456778999976642 22 3679999999999976421 1111 11233445555554322 3469999999
Q ss_pred hHHHHHH-HH---HhcC------C------CCEEEEeCCCChhhhhhHHHhCCcccc-cccccccceEEEeecCccCCcc
Q 045431 135 AKCDISR-LQ---IVFG------S------NVTMAVQDPSYPAYVDSSVIMGQTGEF-QKDAEKYGKIEYMRCTAENGFF 197 (433)
Q Consensus 135 ~~~al~~-l~---~l~~------~------gd~Vl~~~p~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 197 (433)
++++... +. .... + ..+|+..+.+|++.............+ ..+......+..++.++...+.
T Consensus 81 GseA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 160 (382)
T PLN00144 81 GTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYGNLEAAR 160 (382)
T ss_pred cHHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCCCCHHHHH
Confidence 9999885 31 1121 1 257888898898865444333321111 1111111233444443211111
Q ss_pred cCCCCCCCccEEEEcCCCCccccCCC--HHHHHHHHHHHHHcCCEEEEeccccccccCCCCCc--ccccCCCCcceEEEe
Q 045431 198 PDLSTVARTDIIFFCSPNNPTGAAAT--REQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRS--IFEIPGAKEVAIETS 273 (433)
Q Consensus 198 ~~~~~~~~~~~i~l~~p~nPtG~~~~--~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~--~~~~~~~~~~vi~i~ 273 (433)
..+ ...++++|++.--+|| |.+++ .+.+++|.++|++||+++|+||+|.++...+.+.+ +..+ .+| +.
T Consensus 161 ~~~-~~~~~aavi~eP~q~~-gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~--~PD----i~ 232 (382)
T PLN00144 161 KLI-QKGKTAAVFVEPVQGE-GGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGV--EPD----IM 232 (382)
T ss_pred Hhc-CCCCeEEEEEccccCC-CCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCC--CCC----EE
Confidence 111 1245667665422899 44444 55599999999999999999999998877664332 3333 244 67
Q ss_pred cccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHH---hcCcCCh-hHHHHHHHHHHHHH
Q 045431 274 SFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLA---CLSPEGF-KAVHEVIGFYKENT 349 (433)
Q Consensus 274 S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~---~l~~~~~-~~~~~~~~~~~~~~ 349 (433)
||||.++ +|+|+||+++++++. +.+.......+.+.++++++++.+ ++++... +++.++.+.+ +
T Consensus 233 t~sK~l~-~G~pig~v~~~~~~~--------~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l---~ 300 (382)
T PLN00144 233 TLAKPLA-GGLPIGAVLVTEKVA--------SAINPGDHGSTFAGGPLVCNAALAVLDKISKPGFLASVAKKGEYL---R 300 (382)
T ss_pred Eeccccc-CCcceEEEEEcHHHH--------hccCCCCCCCCCCCCHHHHHHHHHHHHHHhhchHHHHHHHHHHHH---H
Confidence 8999997 999999999998875 333323344566788999998884 4443332 3334443333 3
Q ss_pred HHHHHHHhhcC-CeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHH
Q 045431 350 DIIVETFNSLG-FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACK 426 (433)
Q Consensus 350 ~~l~~~l~~~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~ 426 (433)
+.+.+.+.+++ +.-+.. .|+++|+.+. .....+...+. ++||.+.|+.. .+.+|++. ..++++++++++
T Consensus 301 ~~l~~~~~~~~~~~~vrg-~G~~~~l~l~-~~~~~~~~~~~-~~Gv~i~~~~~-----~~~lrl~p~~~~~~~~i~~~~~ 372 (382)
T PLN00144 301 ELLRRKLGGNPHVKEVRG-VGLLVGIQLD-VPAGPLVDACR-DSGLLVLTAGK-----GDVVRLVPPLVISEAELEQAVE 372 (382)
T ss_pred HHHHHHHhhCCCceeeec-CceEEEEEec-CccHHHHHHHH-HCCeEEeecCC-----CCEEEEeCCCccCHHHHHHHHH
Confidence 34444455542 222222 8899999984 23455666655 45999988621 37899995 358999999999
Q ss_pred HHHHhh
Q 045431 427 RFKHLY 432 (433)
Q Consensus 427 ~l~~~l 432 (433)
+|.+++
T Consensus 373 ~l~~~l 378 (382)
T PLN00144 373 ILADCL 378 (382)
T ss_pred HHHHHH
Confidence 999876
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-22 Score=190.92 Aligned_cols=333 Identities=14% Similarity=0.112 Sum_probs=217.8
Q ss_pred CceEEecCCCC-CCCChHHHHHHHHHHHhhcccCCCCC--CCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHH
Q 045431 63 AEVISLGIGDT-TEPIPEVITSALAKRSYALSTQEGYS--GYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDI 139 (433)
Q Consensus 63 ~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~~~~~~~~--~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al 139 (433)
.++++|+.+++ .+...+.+.++..+++.+++.....+ -++...-..+|.++||+|+ + .++.+++++|..+.+
T Consensus 102 r~~l~FsSndYLGL~~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~----g-~e~all~sSGy~AN~ 176 (476)
T PLN02955 102 KKLLLFSGNDYLGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLK----K-KEDCLVCPTGFAANM 176 (476)
T ss_pred ceEEEeeccCccCCCCCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHH----C-CCcEEEECChHHHHH
Confidence 47899999987 57788999999999999886422211 1111223377888999987 4 456788888888877
Q ss_pred HHHHHh--------------cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCCCC
Q 045431 140 SRLQIV--------------FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVAR 205 (433)
Q Consensus 140 ~~l~~l--------------~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (433)
.++..+ ..++|.|+++.-+|.+....++....++- .++..+++++-+.+...++...+
T Consensus 177 ~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~--------a~~~~f~HND~~~Le~~L~~~~~ 248 (476)
T PLN02955 177 AAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGN--------VEVFVYRHCDMYHLNSLLSSCKM 248 (476)
T ss_pred HHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhccccCC--------ceEEEeCCCCHHHHHHHHHhCCC
Confidence 776555 24667899999999999988887743211 25666666543332222332222
Q ss_pred ccEEEEcCC-CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccc-cCCCCcceEEEecccccccccc
Q 045431 206 TDIIFFCSP-NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFE-IPGAKEVAIETSSFSKYAGFTG 283 (433)
Q Consensus 206 ~~~i~l~~p-~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~-~~~~~~~vi~i~S~sK~~~~~G 283 (433)
.+.++++.+ -++.|.+.+ +++|.++|++||+++|+||+|+.+..+.......+ +.-.++..|+++||||.+|+.|
T Consensus 249 ~~~~Vv~EgV~SmdGdiap---L~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~G~~G 325 (476)
T PLN02955 249 KRKVVVTDSLFSMDGDFAP---MEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKAAGCHG 325 (476)
T ss_pred CceEEEEeCCCCCCCCcCC---HHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCccchhccC
Confidence 234555655 788899888 78888888999999999999997766543333332 2212466799999999998777
Q ss_pred cceeeeeccccccccCCcchhHHHHHHHhh-ccCC-CcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCC
Q 045431 284 VRLGWTVIPKELLFSDGFPVAKDFNRIVCT-CFNG-ASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGF 361 (433)
Q Consensus 284 ~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 361 (433)
||++++++++ +.+...... .+.+ .++....++.+.++.... -..++++++++.+++.+. .|+
T Consensus 326 ---Gfi~gs~~~~--------~~l~~~~~~~ifStalpp~~aaa~laal~l~~~--~~~~r~~L~~n~~~fr~~---~G~ 389 (476)
T PLN02955 326 ---GFIACSKKWK--------QLIQSRGRSFIFSTAIPVPMAAAAYAAVVVARK--EKWRRKAIWERVKEFKAL---SGV 389 (476)
T ss_pred ---ceeecHHHHH--------HHHHHhCCCCeecccccHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHh---cCC
Confidence 9999998774 444432211 1122 233333444444432111 134667788888877763 365
Q ss_pred eeecCCCccEEEEECCCC-ChHHHHHHHHHcCCeEecCCCCCC-CCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 362 KVYGGKNAPYVWVQFPGR-SSWDVFSEILEKTHVVTTPGSGFG-PGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 362 ~~~~~~~g~~~~~~~~~~-~~~~~~~~l~~~~gi~v~~g~~f~-~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
.+ .++.+.+.+... ...++.+.|++ +||.+.+...-. +.+...+||++ ..+++||+.+++.|.+++
T Consensus 390 ~~----~sPI~pI~ig~~~~a~~~~~~L~~-~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId~lv~~L~~~~ 459 (476)
T PLN02955 390 DI----SSPIISLVVGNQEKALKASRYLLK-SGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKKLITALSSCL 459 (476)
T ss_pred CC----CCCEEEEEeCCHHHHHHHHHHHHH-CCCEEEEECCCCCCCCCceEEEeeCCCCCHHHHHHHHHHHHHHH
Confidence 53 355666666532 33445666555 599997654432 34556799997 348999999999998764
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-22 Score=192.63 Aligned_cols=274 Identities=17% Similarity=0.166 Sum_probs=180.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHHHHhcCCCCEEEEeCCCChhhhhhHH----HhCCcc
Q 045431 98 YSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSSV----IMGQTG 173 (433)
Q Consensus 98 ~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l~~l~~~gd~Vl~~~p~~~~~~~~~~----~~g~~~ 173 (433)
+..|+ .....+|++.+|++. +.+. .++++|+++++.++..++++||+|++++|+|++....+. ..|
T Consensus 46 y~r~~-~pt~~~le~~la~l~----g~~~--~~~~~sG~~ai~~~~~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G--- 115 (366)
T PRK08247 46 YSRTG-NPTRGVLEQAIADLE----GGDQ--GFACSSGMAAIQLVMSLFRSGDELIVSSDLYGGTYRLFEEHWKKWN--- 115 (366)
T ss_pred ccCCC-CchHHHHHHHHHHHh----CCCc--EEEEcCHHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHhhccC---
Confidence 44553 456789999999997 6543 366777788988766788999999999999987544333 345
Q ss_pred cccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccC
Q 045431 174 EFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISD 253 (433)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~ 253 (433)
.+++.++..+...+...+ .+++++|++++|+||+|. ..++++|+++|++||+++|+|++|+.....
T Consensus 116 ---------~~v~~vd~~d~~~l~~~i--~~~tklv~le~P~NP~~~---~~dl~~I~~la~~~g~~lIvD~t~~~~~~~ 181 (366)
T PRK08247 116 ---------VRFVYVNTASLKAIEQAI--TPNTKAIFIETPTNPLMQ---ETDIAAIAKIAKKHGLLLIVDNTFYTPVLQ 181 (366)
T ss_pred ---------ceEEEECCCCHHHHHHhc--ccCceEEEEECCCCCCCc---HHHHHHHHHHHHHcCCEEEEECCCcccccc
Confidence 366666653211111111 257899999999999764 677999999999999999999999632111
Q ss_pred CCCCcccccCCCCcceEEEecccccccc-cccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCc
Q 045431 254 DNPRSIFEIPGAKEVAIETSSFSKYAGF-TGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSP 332 (433)
Q Consensus 254 ~~~~~~~~~~~~~~~vi~i~S~sK~~~~-~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~ 332 (433)
.++. .+..++++|+||.++. ++++.|+++++++.+ .+.+...+.......+++.|..+...++
T Consensus 182 ---~p~~-----~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l-------~~~~~~~~~~~g~~~s~~~a~l~~~~l~- 245 (366)
T PRK08247 182 ---RPLE-----EGADIVIHSATKYLGGHNDVLAGLVVAKGQEL-------CERLAYYQNAAGAVLSPFDSWLLIRGMK- 245 (366)
T ss_pred ---Cchh-----cCCcEEEeecceeccCCCceeeeEEecChHHH-------HHHHHHHHHhcCCCCChHHHHHHHhccC-
Confidence 1111 2345999999999963 246889999874332 3555555544445567777776666554
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHhhc-CCe-eecC-CCccEEEEECCCCC-hHHHHHH---------HHHcCCeEecCC
Q 045431 333 EGFKAVHEVIGFYKENTDIIVETFNSL-GFK-VYGG-KNAPYVWVQFPGRS-SWDVFSE---------ILEKTHVVTTPG 399 (433)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~-~~~~-~~g~~~~~~~~~~~-~~~~~~~---------l~~~~gi~v~~g 399 (433)
.+..+.++.+++++.+.+.|+++ ++. +..| .+|++.| .+.+.. ...++.. +.....+.+.|+
T Consensus 246 ----tl~~r~~~~~~~a~~l~~~L~~~p~v~~v~~P~~gg~~sf-~~~~~~~~~~~~~~l~~~~~~~slg~~~sl~~~p~ 320 (366)
T PRK08247 246 ----TLALRMRQHEENAKAIAAFLNEQPGVTDVLYPGRGGMLSF-RLQDEEWVNPFLKSLKLITFAESLGGVESFITYPA 320 (366)
T ss_pred ----cHHHHHHHHHHHHHHHHHHHHhCCCeeEEecCCcCcEEEE-EECCHHHHHHHHHcCCcceEccCCCCCceEEECCc
Confidence 23455567799999999999997 665 3344 6777766 564211 1112221 112335666777
Q ss_pred CCCCC-----------CCCCeEEEeecc
Q 045431 400 SGFGP-----------GGEGFIRVSAFG 416 (433)
Q Consensus 400 ~~f~~-----------~~~~~iRi~~~~ 416 (433)
..+.. -.++.+|||++.
T Consensus 321 ~~~~~~~~~~~r~~~gi~~~~~R~svGl 348 (366)
T PRK08247 321 TQTHADIPEEIRIANGVCNRLLRFSVGI 348 (366)
T ss_pred ccccccCCHHHHHhcCCCCCeEEEEecc
Confidence 65421 125689999765
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-21 Score=188.94 Aligned_cols=318 Identities=14% Similarity=0.118 Sum_probs=203.6
Q ss_pred CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhc----CCCC
Q 045431 76 PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVF----GSNV 150 (433)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~----~~gd 150 (433)
++.+.+.+++.+.+.... .....| .+..++.+.+.+++.+.++++++++++++|+++++.. +..+. .+||
T Consensus 31 ~~~~~~~~a~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~ 105 (371)
T PRK13520 31 EPHPIARKAHEMFLETNL--GDPGLF---PGTAKLEEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLAKAEKP 105 (371)
T ss_pred CchHHHHHHHHHHHhcCC--CCcccC---ccHHHHHHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhccCCCc
Confidence 456777788888775421 111122 2334433444444444347777789999999999876 44443 3579
Q ss_pred EEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEEEEcCCCCccccCCCHHHH
Q 045431 151 TMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIFFCSPNNPTGAAATREQL 227 (433)
Q Consensus 151 ~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~~p~nPtG~~~~~~~~ 227 (433)
+|++.+++|..+...++..| .+++.++.+.++....+ +++ .+++++|++++++||||.+.+ +
T Consensus 106 ~vl~~~~~h~s~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~vi~~~~~~~tG~~~~---l 170 (371)
T PRK13520 106 NIVVPESAHFSFDKAADMLG------------VELRRAPLDDDYRVDVKAVEDLIDDNTIGIVGIAGTTELGQVDP---I 170 (371)
T ss_pred eEEecCcchHHHHHHHHHcC------------ceEEEecCCCCCcCCHHHHHHHHhhCCEEEEEEcCCcCCcccCC---H
Confidence 99999999999888777777 46777777543222221 222 246677777788999999988 8
Q ss_pred HHHHHHHHHcCCEEEEeccccccccC--CCCCcccccCCCCcceEEEecccccccccccceeeeecccc-ccccCCcchh
Q 045431 228 TRLVQFAKDNGSIIVYDSAYALYISD--DNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKE-LLFSDGFPVA 304 (433)
Q Consensus 228 ~~i~~~a~~~~~~li~De~~~~~~~~--~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~-~~~~~~~~~~ 304 (433)
++|.++|+++|+++++|++|+.+... ..... .... ..+...+..|.+|+. ++|.++|++++.++ ++
T Consensus 171 ~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~-~~~~-~~~vd~~~~s~~K~~-~a~~~~G~~~~~~~~~~-------- 239 (371)
T PRK13520 171 PELSKIALENGIFLHVDAAFGGFVIPFLDDPPN-FDFS-LPGVDSITIDPHKMG-LAPIPAGGILFRDESYL-------- 239 (371)
T ss_pred HHHHHHHHHcCCCEEEEecchhHHHHhhcCCCC-cccc-CCCCceEEECCcccc-CccCCceEEEEcCHHHH--------
Confidence 88888899999999999999865421 11111 1111 112235556888965 57889998776443 43
Q ss_pred HHHHHHHhh--------ccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCe-eecCCCccEEEEE
Q 045431 305 KDFNRIVCT--------CFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFK-VYGGKNAPYVWVQ 375 (433)
Q Consensus 305 ~~~~~~~~~--------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~-~~~~~~g~~~~~~ 375 (433)
+.+...... ...+.+.....++.++++......+++.+++..++++++.+.|++.|+. +..+ ...++.+.
T Consensus 240 ~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~v~~~ 318 (371)
T PRK13520 240 DALAVDTPYLTSKKQATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKERGFEPVIEP-VLNIVAFD 318 (371)
T ss_pred HhhcccCccccCCCCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhCCCEEecCC-CceEEEEe
Confidence 221100000 0001122334444555543333446788889999999999999988887 4443 45577777
Q ss_pred CCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhhC
Q 045431 376 FPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 376 ~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l~ 433 (433)
++ +..++...|.++ ||.+.++. ..+++|+++ +.+++|++.+++.|+++++
T Consensus 319 ~~--~~~~v~~~L~~~-gi~v~~~~-----~~~~iRis~~~~~t~edi~~~~~~l~~~~~ 370 (371)
T PRK13520 319 DP--NPDEVREKLRER-GWRVSVTR-----CPEALRIVCMPHVTREHIENFLEDLKEVKK 370 (371)
T ss_pred cC--CHHHHHHHHHHC-CceeccCC-----CCCEEEEEEECCCCHHHHHHHHHHHHHHhh
Confidence 76 455666666555 99987643 246899986 3689999999999998763
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.9e-23 Score=195.65 Aligned_cols=318 Identities=13% Similarity=0.118 Sum_probs=203.4
Q ss_pred CChHHHHHHHHHHHhhcccCCCC--CCCCC--CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhc----
Q 045431 76 PIPEVITSALAKRSYALSTQEGY--SGYGA--EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVF---- 146 (433)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~--~~Y~~--~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~---- 146 (433)
++|+.+.+++.+.+.......+. ..++. ..-..++|+.+++++ ++++++|++|+|+++++.+ +..++
T Consensus 9 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----g~~~~~v~~~~g~t~a~~~~l~~l~~~~~ 84 (353)
T TIGR03235 9 PIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEAL----GADTEEVIFTSGATESNNLAILGLARAGE 84 (353)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHh----CCCCCeEEEeCCHHHHHHHHHHHHHHhcc
Confidence 57888999998887532110111 01110 012457788888876 8888999999999999986 45554
Q ss_pred CCC-CEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEEEEcCCCCccccCC
Q 045431 147 GSN-VTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIFFCSPNNPTGAAA 222 (433)
Q Consensus 147 ~~g-d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~~p~nPtG~~~ 222 (433)
.+| +.|++....|+.+...+..+...+ .+++.++.+.++.++.+ +++ .++++++++++|+||||.++
T Consensus 85 ~~g~~~vi~~~~~~~s~~~~~~~~~~~G---------~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~ 155 (353)
T TIGR03235 85 QKGKKHIITSAIEHPAVLEPIRALERNG---------FTVTYLPVDESGRIDVDELADAIRPDTLLVSIMHVNNETGSIQ 155 (353)
T ss_pred cCCCCeeeEcccccHHHHHHHHHHHhcC---------CEEEEEccCCCCcCCHHHHHHhCCCCCEEEEEEcccCCceecc
Confidence 356 788888888887766555443223 37788887644333222 222 25788999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccC-Cc
Q 045431 223 TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSD-GF 301 (433)
Q Consensus 223 ~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~-~~ 301 (433)
+ +++|.++|+++|+++|+|++++.... +..+.. .+..+++.|++|++|.+| +|+++++++.+... ..
T Consensus 156 ~---~~~I~~l~~~~~~~~ivD~a~~~g~~---~~~~~~----~~~D~~~~s~~K~~gp~g--~g~l~~~~~~~~~~~~~ 223 (353)
T TIGR03235 156 P---IREIAEVLEAHEAFFHVDAAQVVGKI---TVDLSA----DRIDLISCSGHKIYGPKG--IGALVIRKRGKPKAPLK 223 (353)
T ss_pred C---HHHHHHHHHHcCCEEEEEchhhcCCc---cccccc----cCCCEEEeehhhcCCCCc--eEEEEEccCcccccccC
Confidence 8 78999999999999999999884221 222222 123477889999987556 89999988753110 00
Q ss_pred ch-h--HHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCC---ccEEEEE
Q 045431 302 PV-A--KDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKN---APYVWVQ 375 (433)
Q Consensus 302 ~~-~--~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---g~~~~~~ 375 (433)
.. . ....+.. ..+.+.....+..++++.. ...+++.+++++++++.+.+.|++.|+++..+.. ...+.+.
T Consensus 224 ~~~~~~~~~~~~~---~gt~~~~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~ 299 (353)
T TIGR03235 224 PIMFGGGQERGLR---PGTLPVHLIVGMGEAAEIA-RRNAQAWEVKLRAMRNQLRDALQTLGVKLNGDPAETIPHILNFS 299 (353)
T ss_pred ceeeCCCCcCccc---cCCCChHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhccCCeEEeCCcccccCCEEEEE
Confidence 00 0 0000111 1223333333333444311 1346788899999999999999888888764322 2245555
Q ss_pred CCCCChHHHHHHHHHcCCeEecCCCCCCCCC--CCeEEEeeccChhHHHHH
Q 045431 376 FPGRSSWDVFSEILEKTHVVTTPGSGFGPGG--EGFIRVSAFGHRGNVLEA 424 (433)
Q Consensus 376 ~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~--~~~iRi~~~~~~~~l~~~ 424 (433)
+++.+..++...| ++ +|.+.+|..|+... +.++|.+++.+++++..+
T Consensus 300 ~~~~~~~~v~~~L-~~-~i~v~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~ 348 (353)
T TIGR03235 300 IDGVNSEALIVNL-RA-DAAVSTGSACSSSKYEPSHVLQAMGLDTDRARGA 348 (353)
T ss_pred eCCcCHHHHHHHH-hC-CeEEEchhhcCCCCCCCCHHHHHcCCCHHHhCcc
Confidence 6665656665555 56 99999999996543 347788877766655443
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-22 Score=195.32 Aligned_cols=332 Identities=14% Similarity=0.132 Sum_probs=205.0
Q ss_pred EEecCCCCCCCChHHHHHHHHHHHh---hcccCCC-C--CCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHH
Q 045431 66 ISLGIGDTTEPIPEVITSALAKRSY---ALSTQEG-Y--SGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDI 139 (433)
Q Consensus 66 i~l~~g~~~~~~~~~~~~a~~~~~~---~~~~~~~-~--~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al 139 (433)
|-|..+... +.|+.+.+++.+.+. ...+... . ..+.......++|+.+++++ ++++++|++++|+++++
T Consensus 5 iyld~a~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~----g~~~~~v~~~~g~t~al 79 (404)
T PRK14012 5 IYLDYSATT-PVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLI----GADPREIVFTSGATESD 79 (404)
T ss_pred EEecCcCCC-CCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHc----CcCcCeEEEeCCHHHHH
Confidence 556666554 678889999988775 1111000 0 01111124567788888886 88889999999999999
Q ss_pred HH-HHHh----cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEEEE
Q 045431 140 SR-LQIV----FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIFF 211 (433)
Q Consensus 140 ~~-l~~l----~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l 211 (433)
.+ +..+ +++||+|++++++|+.+...+..+...+ .+++.++.++++.++.+ +++ .++++++++
T Consensus 80 ~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g---------~~~~~v~~~~~g~~d~~~l~~~i~~~t~lv~~ 150 (404)
T PRK14012 80 NLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREG---------FEVTYLDPQSNGIIDLEKLEAAMRDDTILVSI 150 (404)
T ss_pred HHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhCC---------CEEEEEccCCCCcCCHHHHHHhcCCCCEEEEE
Confidence 86 4444 3789999999999988766655442112 47778877654332222 222 357889999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeec
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVI 291 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~ 291 (433)
++++||||.+++ +++|.++|+++|+++|+|++++... .+..+... +..+++.|++|.+| |+ ++|++++
T Consensus 151 ~~~~n~tG~~~~---~~~I~~la~~~g~~vivD~a~~~g~---~~~~~~~~----~~D~~~~s~~K~~g-p~-g~G~l~~ 218 (404)
T PRK14012 151 MHVNNEIGVIQD---IAAIGEICRERGIIFHVDAAQSVGK---VPIDLSKL----KVDLMSFSAHKIYG-PK-GIGALYV 218 (404)
T ss_pred ECcCCCccchhh---HHHHHHHHHHcCCEEEEEcchhcCC---cccCcccC----CCCEEEEehhhccC-CC-ceEEEEE
Confidence 999999999887 7888999999999999999987311 12223222 12377789999886 43 5899988
Q ss_pred cccccccCCcchhHH--HHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecC--
Q 045431 292 PKELLFSDGFPVAKD--FNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGG-- 366 (433)
Q Consensus 292 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~-- 366 (433)
+++...+..+..... ..+.. ..+.+.....+..+++... ...+....++.++.++++.+.|+++ ++.+.+.
T Consensus 219 ~~~~~~~~~~~~~g~~~~~~~~---~gt~~~~~~~~l~~al~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~~~ 294 (404)
T PRK14012 219 RRKPRVRLEAQMHGGGHERGMR---SGTLPTHQIVGMGEAARIA-KEEMATENERIRALRDRLWNGIKDIEEVYLNGDLE 294 (404)
T ss_pred ecCCCCCCCceecCCCccCCcc---CCCcCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCcc
Confidence 876532111100000 00011 1112222222222222211 1234556777888888888888876 5554321
Q ss_pred ---CCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCC-----------------CCCeEEEee--ccChhHHHHH
Q 045431 367 ---KNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPG-----------------GEGFIRVSA--FGHRGNVLEA 424 (433)
Q Consensus 367 ---~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~-----------------~~~~iRi~~--~~~~~~l~~~ 424 (433)
....++|+.+. +..++...+ + ++.+..|..|.+. ..+.||+++ +.+++|++.+
T Consensus 295 ~~~~~~~~~~~~~~--~~~~~~~~l--~-~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~~dvd~~ 369 (404)
T PRK14012 295 QRVPGNLNVSFNYV--EGESLIMAL--K-DLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYA 369 (404)
T ss_pred ccCCCEEEEEEeCc--CHHHHHHhC--C-CeEEEchhhhCCCCCCCCHHHHHcCCChhhcCceEEEEecCCCCHHHHHHH
Confidence 12234555553 233444433 2 7777777666431 136899996 4689999999
Q ss_pred HHHHHHhh
Q 045431 425 CKRFKHLY 432 (433)
Q Consensus 425 l~~l~~~l 432 (433)
++.|++++
T Consensus 370 ~~~l~~~~ 377 (404)
T PRK14012 370 IELVRKSI 377 (404)
T ss_pred HHHHHHHH
Confidence 99998875
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.6e-22 Score=189.44 Aligned_cols=213 Identities=14% Similarity=0.153 Sum_probs=148.7
Q ss_pred CCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhH----HHhCCcccccc
Q 045431 103 AEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSS----VIMGQTGEFQK 177 (433)
Q Consensus 103 ~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~~~~ 177 (433)
+..+..+|++++|++. +. +++++++|+++++.+ +..++++||+|+++.|.|+...... +..|
T Consensus 62 ~~p~~~~Le~~iA~~~----g~--~~~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G------- 128 (400)
T PRK06234 62 GNPTSTEVENKLALLE----GG--EAAVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYG------- 128 (400)
T ss_pred CCccHHHHHHHHHHHh----CC--CcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhCC-------
Confidence 5678999999999997 43 357778888888876 6788999999999999998765443 4455
Q ss_pred cccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHc--CCEEEEeccccccccCCC
Q 045431 178 DAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDN--GSIIVYDSAYALYISDDN 255 (433)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~--~~~li~De~~~~~~~~~~ 255 (433)
.+++.++..+...+...+ .+++++|++++|+||||.+.+ +++|.++|+++ |+++|+|++|+.....
T Consensus 129 -----~~v~~vd~~d~e~l~~~i--~~~tklI~iesP~NPtG~v~d---l~~I~~la~~~~~~i~livDea~~~~~~~-- 196 (400)
T PRK06234 129 -----VEVTFVDTSNLEEVRNAL--KANTKVVYLETPANPTLKVTD---IKAISNIAHENNKECLVFVDNTFCTPYIQ-- 196 (400)
T ss_pred -----eEEEEECCCCHHHHHHHh--ccCCeEEEEECCCCCCCCcCC---HHHHHHHHHhcCCCCEEEEECCCCchhcC--
Confidence 366666653211111111 357899999999999999988 78888889887 9999999999865332
Q ss_pred CCcccccCCCCcceEEEecccccccccccce-eeeeccccccccCCcchhHHHHHH--HhhccCCCcHHHHHHHHHhcCc
Q 045431 256 PRSIFEIPGAKEVAIETSSFSKYAGFTGVRL-GWTVIPKELLFSDGFPVAKDFNRI--VCTCFNGASNISQAGGLACLSP 332 (433)
Q Consensus 256 ~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~-G~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~q~~~~~~l~~ 332 (433)
.++ .. +..+++.|+||.++.+|+++ ||++++++++ +.+... ........++.....+...++
T Consensus 197 -~~l-~~----g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~--------~~l~~~~~~~~~g~~l~p~~a~l~~~~l~- 261 (400)
T PRK06234 197 -RPL-QL----GADVVVHSATKYLNGHGDVIAGFVVGKEEFI--------NQVKLFGIKDMTGSVIGPFEAFLIIRGMK- 261 (400)
T ss_pred -Cch-hh----CCcEEEeeccccccCCCCceeEEEEecHHHH--------HHHHHHHHHHhcCCCCCHHHHHHHHhccC-
Confidence 112 11 23489999999998788875 9999988764 444321 111223345554444443333
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHhhc
Q 045431 333 EGFKAVHEVIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~l~~~l~~~ 359 (433)
.+..+.++..++...+.+.|+++
T Consensus 262 ----tl~~r~~~~~~na~~~a~~L~~~ 284 (400)
T PRK06234 262 ----TLQIRMEKHCKNAMKVAKFLESH 284 (400)
T ss_pred ----cHHHHHHHHHHHHHHHHHHHHcC
Confidence 33555666677888888888876
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.8e-22 Score=192.82 Aligned_cols=357 Identities=8% Similarity=0.032 Sum_probs=213.8
Q ss_pred HHHHHHHhcCCCCceEEecCCCCC---CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCC-CC
Q 045431 51 RRKAAHMLKYPDAEVISLGIGDTT---EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGI-EE 126 (433)
Q Consensus 51 ~~~~~~~~~~~~~~~i~l~~g~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~-~~ 126 (433)
+.++......+++..||+..|.-. -..+|.+.+++.+++.+.. ...+. ....+....+|+.+....+. ..
T Consensus 28 ~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~----~~~~~--~~~~~~~~~la~~l~~~~p~~~~ 101 (421)
T PRK09792 28 SAENATLKDVEGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFT----HTAYQ--IVPYESYVTLAEKINALAPVSGQ 101 (421)
T ss_pred eccccEEEeCCCCEEEEccCchhhhcCCCCCHHHHHHHHHHHHhcc----CcccC--ccCCHHHHHHHHHHHHhCCCCCC
Confidence 344444556677889999766432 2368899999999987632 11111 11233334555555432222 23
Q ss_pred CcEEEcCChHHHHHH-H--HHhcCCCCEEEEeCCCChhhhhhHHHh-CCcc-cccccccccceEEEeecCccC-Ccc---
Q 045431 127 GDIFVSDGAKCDISR-L--QIVFGSNVTMAVQDPSYPAYVDSSVIM-GQTG-EFQKDAEKYGKIEYMRCTAEN-GFF--- 197 (433)
Q Consensus 127 ~~i~~~~G~~~al~~-l--~~l~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~-~~~~~~~~~~~~~~~~~~~~~-~~~--- 197 (433)
+.+++++++++|+.. + ........+|+..+.+|++........ +... ....++.....+..+|...+. +..
T Consensus 102 ~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~ 181 (421)
T PRK09792 102 AKTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQD 181 (421)
T ss_pred ceEEEeCChHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcccccccHHH
Confidence 688888899998875 3 122234467888898898865433333 2110 111111111123333332111 110
Q ss_pred --cCCCC-------CCCccEEEEcCCCCccccCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCc
Q 045431 198 --PDLST-------VARTDIIFFCSPNNPTGAAA-TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKE 267 (433)
Q Consensus 198 --~~~~~-------~~~~~~i~l~~p~nPtG~~~-~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 267 (433)
..++. ..++.+|++.-.++|+|..+ +.+.+++|.++|++||+++|+||++.++.+.+.+.....+...+|
T Consensus 182 ~~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pD 261 (421)
T PRK09792 182 SLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPD 261 (421)
T ss_pred HHHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHhcCCCCc
Confidence 01111 13566666543389999876 899999999999999999999999999877665544444433344
Q ss_pred ceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-hHHHHHHHHHH
Q 045431 268 VAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-KAVHEVIGFYK 346 (433)
Q Consensus 268 ~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~ 346 (433)
+.||||.++ +|+|+||++++++++ +.+.......+.+.++++++++.+.++.... +++++.+ .+.
T Consensus 262 ----i~t~gK~l~-~G~pigav~~~~~i~--------~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~~~~~~~-~~g 327 (421)
T PRK09792 262 ----LMTMAKSLA-GGMPLSGVVGNANIM--------DAPAPGGLGGTYAGNPLAVAAAHAVLNIIDKESLCERAN-QLG 327 (421)
T ss_pred ----EEEeehhhc-CCCceEEEEEcHHHH--------hccCCCCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHH-HHH
Confidence 578999998 999999999988875 2232223445667889999977666652211 2333333 223
Q ss_pred HHHHHHHHHHh-hcCCeeecCCC-ccEEEEECCCC--------ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--
Q 045431 347 ENTDIIVETFN-SLGFKVYGGKN-APYVWVQFPGR--------SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA-- 414 (433)
Q Consensus 347 ~~~~~l~~~l~-~~g~~~~~~~~-g~~~~~~~~~~--------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~-- 414 (433)
++.+...+.|. +++. +..+.+ |+++|+.++.. ....+...+++ +||.+.+.. ...+.|||..
T Consensus 328 ~~l~~~l~~l~~~~p~-v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~~-~Gv~i~~~g----~~~~~irl~P~l 401 (421)
T PRK09792 328 QRLKNTLIDAKESVPA-IAAVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRALA-QGLLLLTCG----AYGNVIRFLYPL 401 (421)
T ss_pred HHHHHHHHHHHHhCCC-cceecccceEEEEEecCCccCCcchHHHHHHHHHHHH-CCcEEeecC----CCCCEEEEeCCC
Confidence 33222222332 2332 223445 89999999732 12345555555 599995421 1247899994
Q ss_pred ccChhHHHHHHHHHHHhhC
Q 045431 415 FGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 415 ~~~~~~l~~~l~~l~~~l~ 433 (433)
..+++++++++++|.++++
T Consensus 402 ~i~~~ei~~~~~~l~~~l~ 420 (421)
T PRK09792 402 TIPDAQFDAAMKILQDALS 420 (421)
T ss_pred cCCHHHHHHHHHHHHHHHh
Confidence 4689999999999998863
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.90 E-value=5e-21 Score=184.45 Aligned_cols=286 Identities=14% Similarity=0.152 Sum_probs=185.8
Q ss_pred HHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhc------CCCCEEEEeCCCChhhhhhHHHhCCccccccccc
Q 045431 108 KPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVF------GSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAE 180 (433)
Q Consensus 108 ~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~ 180 (433)
.++++.+++++ +++++++++++|+++++.+ +..+. ++||+|++++++|.++...++..|
T Consensus 62 ~~~~~~la~~~----g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~~h~~~~~~~~~~G---------- 127 (373)
T TIGR03812 62 EEVVGSLGNLL----HLPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFSFEKAAEMLG---------- 127 (373)
T ss_pred HHHHHHHHHHh----CCCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCcchHHHHHHHHHcC----------
Confidence 44555555554 8888889999999998765 43332 477999999999999888888888
Q ss_pred ccceEEEeecCccCCcccC-CCC--CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccC--C-
Q 045431 181 KYGKIEYMRCTAENGFFPD-LST--VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISD--D- 254 (433)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~--~- 254 (433)
.+++.++.+.+.....+ +++ .+++..+++++|+||||.+.+ +++|.++|+++|+++|+|++|+.+... .
T Consensus 128 --~~~~~v~~~~~~~~d~~~l~~~l~~~~~~vv~~~~~~~tG~~~~---~~~i~~l~~~~~~~livD~a~~~~~~~~~~~ 202 (373)
T TIGR03812 128 --LELRYAPLDEDYTVDVKDVEDLIDDNTIGIVGIAGTTELGQIDD---IEELSKIALENGIYLHVDAAFGGFVIPFLKK 202 (373)
T ss_pred --CeEEEEeeCCCCCcCHHHHHHHHhhCcEEEEEECCCCCCCccCC---HHHHHHHHHHcCCeEEEEcCchhHHHHHHhc
Confidence 47777777543222111 221 234544555568999999877 778888899999999999999864321 0
Q ss_pred --CCCcccccCCCCcceEEEecccccccccccceeeee-ccccccccCCcchhHHHHHHHhhcc--------CCCcHHHH
Q 045431 255 --NPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTV-IPKELLFSDGFPVAKDFNRIVCTCF--------NGASNISQ 323 (433)
Q Consensus 255 --~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~-~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~q 323 (433)
....+ .+. ...-..+..|.+|+ ++++.+.|+++ .+++++ +.+........ .+.+....
T Consensus 203 ~~~~~~~-d~~-~~~~d~~~~s~~K~-~~~~~~~G~~~~~~~~~~--------~~l~~~~~~~~~~~~~~~~gt~~~~~~ 271 (373)
T TIGR03812 203 GYNPPPF-DFS-LPGVQSITIDPHKM-GLSPIPAGGILFRSKSYL--------KYLSVDAPYLTVKKQATITGTRSGASA 271 (373)
T ss_pred CCCCCCc-ccc-CCCCCEEEECcccc-CCCcCCceEEEEeCHHHH--------hhhcccCcccCCCCCcceEeechhHHH
Confidence 00011 010 01112445678894 45788888655 455553 22210000000 11233445
Q ss_pred HHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCC
Q 045431 324 AGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFG 403 (433)
Q Consensus 324 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~ 403 (433)
.++.++++......+++..++..++++++.+.|+++|+....+....++.+.+++ ..++.+.|.+ +||.+.++.
T Consensus 272 ~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~v~~~~~~--~~~v~~~L~~-~gi~v~~~~--- 345 (373)
T TIGR03812 272 AATYAVIKYLGREGYRKIVAECMENTRYLVEELKKIGFEPVIEPVLNIVAFEVDD--PEEVRKKLRD-RGWYVSVTR--- 345 (373)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEcCCCceEEEEEeCC--HHHHHHHHHH-CCceeccCC---
Confidence 5555555543345678888999999999999999987754333355677777763 3466666655 499997642
Q ss_pred CCCCCeEEEeec--cChhHHHHHHHHHHHh
Q 045431 404 PGGEGFIRVSAF--GHRGNVLEACKRFKHL 431 (433)
Q Consensus 404 ~~~~~~iRi~~~--~~~~~l~~~l~~l~~~ 431 (433)
.++++|+++. ++++|++.+++.|+++
T Consensus 346 --~~~~iRis~~~~~t~edid~l~~~L~~~ 373 (373)
T TIGR03812 346 --CPKALRIVVMPHVTREHIEEFLEDLKEI 373 (373)
T ss_pred --CCCEEEEEEECCCCHHHHHHHHHHHhhC
Confidence 3568999964 6899999999999763
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=189.07 Aligned_cols=345 Identities=12% Similarity=0.099 Sum_probs=208.8
Q ss_pred HHHHHhcCCCCceEEecCCC---CCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcE
Q 045431 53 KAAHMLKYPDAEVISLGIGD---TTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDI 129 (433)
Q Consensus 53 ~~~~~~~~~~~~~i~l~~g~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i 129 (433)
++......+++..||+..|. +--..+|.+.+++.+++.+... ....|. .....+|.+.|+++. + .+.+
T Consensus 25 ~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~--~~~~~~-~~~~~~la~~L~~~~----~--~~~~ 95 (397)
T TIGR03246 25 EGSRVWDQQGKEYIDFAGGIAVNALGHAHPELVKALIEQADKLWH--IGNGYT-NEPVLRLAKKLVDAT----F--ADKV 95 (397)
T ss_pred ecCEEEeCCCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhccc--ccCccC-CHHHHHHHHHHHhhC----C--CCEE
Confidence 33334455677899997763 2123689999999999875321 111221 222344555555442 3 3689
Q ss_pred EEcCChHHHHHHHHHhc---------CCCCEEEEeCCCChhhhhhH-HHhCCcccccccccccceEEEeecCccCCcccC
Q 045431 130 FVSDGAKCDISRLQIVF---------GSNVTMAVQDPSYPAYVDSS-VIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD 199 (433)
Q Consensus 130 ~~~~G~~~al~~l~~l~---------~~gd~Vl~~~p~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (433)
+++++++++......+. ...+.|+..+-+|++..... ...+.......++.....+..++.++...+...
T Consensus 96 ~f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 175 (397)
T TIGR03246 96 FFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPYNDLAAAKAL 175 (397)
T ss_pred EEeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCCCCHHHHHHH
Confidence 99988888887632222 12356777777777754333 222211110001111123344444321111111
Q ss_pred CCCCCCccEEEEcCCCCccccCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccc
Q 045431 200 LSTVARTDIIFFCSPNNPTGAAA-TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKY 278 (433)
Q Consensus 200 ~~~~~~~~~i~l~~p~nPtG~~~-~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~ 278 (433)
+ .+++++|++..++++.|+.. +.+.+++|.++|++||+++|.||+|.++...+.......+.-.+| +-++||.
T Consensus 176 l--~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv~pD----i~t~~K~ 249 (397)
T TIGR03246 176 I--SDKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPD----ILTSAKA 249 (397)
T ss_pred h--ccCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchhhhhcCCCCC----EEEeehh
Confidence 1 14677766653344555443 889999999999999999999999987755554322222221233 3389999
Q ss_pred ccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhh
Q 045431 279 AGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNS 358 (433)
Q Consensus 279 ~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 358 (433)
++ +|+++||++++++++ +.+.......+.+.++++++++.+.++... -+++.++++++.+++.+.|++
T Consensus 250 lg-gG~pigav~~~~~i~--------~~~~~~~~~~t~~~~p~~~aaa~a~l~~~~---~~~l~~~~~~~~~~l~~~L~~ 317 (397)
T TIGR03246 250 LG-GGFPIGAMLTTTEIA--------AHLKVGTHGTTYGGNPLACAVAGKVLDLVN---TPELLAGVKQRHDLFVDGLEK 317 (397)
T ss_pred hh-CCcceeEEEEcHHHH--------HhccCCCcCCCCCCCHHHHHHHHHHHHHHh---hccHHHHHHHHHHHHHHHHHH
Confidence 98 899999999998874 334322233445578888888888886321 145677888888888888887
Q ss_pred cC--C---eeecCCCccEEEEECCC---CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe--eccChhHHHHHHHHH
Q 045431 359 LG--F---KVYGGKNAPYVWVQFPG---RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS--AFGHRGNVLEACKRF 428 (433)
Q Consensus 359 ~g--~---~~~~~~~g~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l 428 (433)
++ . ....+ .|.++.+.+.. .....+...+++ +||.+.+. +.+++|++ +..+++++++++++|
T Consensus 318 l~~~~~~~~~vrg-~G~~~~i~~~~~~~~~~~~~~~~l~~-~Gv~~~~~------g~~~lR~~p~~~~t~~~i~~~~~~l 389 (397)
T TIGR03246 318 INARYNVFSEIRG-KGLLIGAVLTEAYQGKAKQFVNAAAE-EGVIALIA------GPNVVRFAPSLVISDDDIDEGLARF 389 (397)
T ss_pred HHhcCCCeEeeec-CceEEEEEEcCchhhHHHHHHHHHHH-CCeEEeec------CCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 53 2 12222 34555555542 134455566555 59998763 24689996 667999999999999
Q ss_pred HHhh
Q 045431 429 KHLY 432 (433)
Q Consensus 429 ~~~l 432 (433)
.+++
T Consensus 390 ~~~l 393 (397)
T TIGR03246 390 ERAI 393 (397)
T ss_pred HHHH
Confidence 8876
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.1e-22 Score=188.86 Aligned_cols=315 Identities=16% Similarity=0.164 Sum_probs=201.3
Q ss_pred CChHHHHHHHHHHHhhcccCCC--CCCCCC--CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHh----c
Q 045431 76 PIPEVITSALAKRSYALSTQEG--YSGYGA--EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIV----F 146 (433)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~--~~~Y~~--~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l----~ 146 (433)
+.|+.+.+++.+.+........ ...++. ..-..++|+.+++++ ++++++|++|+|+++++++ +..+ .
T Consensus 10 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----g~~~~~v~~t~~~t~a~~~~l~~~~~~~~ 85 (364)
T PLN02651 10 PIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALI----GADPKEIIFTSGATESNNLAIKGVMHFYK 85 (364)
T ss_pred CCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHh----CCCCCeEEEeCCHHHHHHHHHHHHHHhcc
Confidence 6788899999887753211011 001110 112446667777765 8888999999999999775 4332 4
Q ss_pred CCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEEEEcCCCCccccCCC
Q 045431 147 GSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIFFCSPNNPTGAAAT 223 (433)
Q Consensus 147 ~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~~p~nPtG~~~~ 223 (433)
++||+|++....|+++...+..+...+ .+++.++.+.++.+..+ +++ .++++++++++++||||.+++
T Consensus 86 ~~g~~vl~~~~~h~s~~~~~~~~~~~g---------~~v~~v~~~~~~~~d~~~l~~~i~~~t~lv~v~~~~n~tG~~~~ 156 (364)
T PLN02651 86 DKKKHVITTQTEHKCVLDSCRHLQQEG---------FEVTYLPVKSDGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQP 156 (364)
T ss_pred CCCCEEEEcccccHHHHHHHHHHHhcC---------CEEEEEccCCCCcCCHHHHHHhcCCCcEEEEEECCCCCceeccc
Confidence 789999999989988766555443223 37777877644332221 221 357899999999999999988
Q ss_pred HHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcch
Q 045431 224 REQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPV 303 (433)
Q Consensus 224 ~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~ 303 (433)
+++|.++|+++|+++++|.+++.... +..+..+ +..+++.|.+|++|.+| +|+++++++.+....+.+
T Consensus 157 ---l~~I~~~~~~~g~~~~vD~a~~~g~~---~~~~~~~----~~D~~~~s~hK~~gp~G--~g~l~v~~~~~~~l~p~~ 224 (364)
T PLN02651 157 ---VEEIGELCREKKVLFHTDAAQAVGKI---PVDVDDL----GVDLMSISGHKIYGPKG--VGALYVRRRPRVRLEPLM 224 (364)
T ss_pred ---HHHHHHHHHHcCCEEEEEcchhhCCc---ccCcccC----CCCEEEechhhhCCCCc--eEEEEEcCCCCCCCCccc
Confidence 77889999999999999999984211 3333322 23488899999765334 899999887653211111
Q ss_pred hHH-H-HHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhh-c-CCeeecCCC-----ccEEEE
Q 045431 304 AKD-F-NRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNS-L-GFKVYGGKN-----APYVWV 374 (433)
Q Consensus 304 ~~~-~-~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~-g~~~~~~~~-----g~~~~~ 374 (433)
... . .... ..+.+.....++.++++.. ....++.+++.++.++++.+.|++ . |+++..+.. ...+.+
T Consensus 225 ~g~~~~~~~~---~GT~~~~~~~~l~~al~~~-~~~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~ 300 (364)
T PLN02651 225 SGGGQERGRR---SGTENTPLVVGLGAACELA-MKEMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNL 300 (364)
T ss_pred cCCCccCCcc---CCCccHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEEE
Confidence 100 0 0111 1223444444344444311 123477778888889999999876 3 788776411 335666
Q ss_pred ECCCCChHHHHHHHHHcCCeEecCCCCCCCC-----------------CCCeEEEee--ccChhHHH
Q 045431 375 QFPGRSSWDVFSEILEKTHVVTTPGSGFGPG-----------------GEGFIRVSA--FGHRGNVL 422 (433)
Q Consensus 375 ~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~-----------------~~~~iRi~~--~~~~~~l~ 422 (433)
.+++.+..++...| .+ |.+..|..|... ..+.+|+|+ ++|++|++
T Consensus 301 ~~~~~~~~~~~~~L-~~--i~v~~g~~c~~~~~~~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~did 364 (364)
T PLN02651 301 SFAYVEGESLLMGL-KE--VAVSSGSACTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTTEEEVD 364 (364)
T ss_pred EeCCCCHHHHHHHh-CC--EEEEchhhcCCCCCCcCHHHHHcCCChHHhCceEEEEcCCCCCHHHcC
Confidence 77777777777666 33 999989877432 137899996 66888874
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-21 Score=183.78 Aligned_cols=212 Identities=18% Similarity=0.197 Sum_probs=148.2
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCCh----hhhhhHHHhCCccccccc
Q 045431 104 EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYP----AYVDSSVIMGQTGEFQKD 178 (433)
Q Consensus 104 ~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~----~~~~~~~~~g~~~~~~~~ 178 (433)
.....+|++++|++. +.+ ..+++++| ++++.. +..++++||+|+++.|.|. .+...++..|
T Consensus 44 ~p~~~~L~~~lA~l~----g~~-~~v~~~sG-~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G-------- 109 (376)
T PRK06460 44 NPTVLELTKKIVELE----NAE-MGVAFSSG-MGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWG-------- 109 (376)
T ss_pred CccHHHHHHHHHHHh----CCC-cEEEeCCH-HHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHHHhhC--------
Confidence 467899999999997 654 35666666 578876 6778999999999987664 3345555566
Q ss_pred ccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCc
Q 045431 179 AEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRS 258 (433)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~ 258 (433)
.++..++.+.+ +....+ ..+++++|++++|+||||.+++. ++|.++|+++|+++|+|++|+.... ..+
T Consensus 110 ----~~v~~~~~~~~-~~l~~~-~~~~tklV~l~sp~NPtG~v~d~---~~I~~la~~~g~~vivDea~~~~~~---~~~ 177 (376)
T PRK06460 110 ----VNVDASNPGSD-NIIEKA-KSKRYDVVFVENITNPLLRVVDI---TELSKVCKENGSILIVDATFSTPIN---QKP 177 (376)
T ss_pred ----cEEEEECCCCH-HHHHHh-cCCCceEEEEECCCCCCCcccCH---HHHHHHHHHcCCEEEEECCcCcccc---CCh
Confidence 36666665432 222222 13578999999999999999994 5688889999999999999975311 111
Q ss_pred ccccCCCCcceEEEecccccccc-cccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhH
Q 045431 259 IFEIPGAKEVAIETSSFSKYAGF-TGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKA 337 (433)
Q Consensus 259 ~~~~~~~~~~vi~i~S~sK~~~~-~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~ 337 (433)
+. .+..+++.|+||+++. .+.+.||++++++++ +.+.+.........++. .+..+++ +.++
T Consensus 178 ---l~--~~~divv~S~sK~l~G~~~~~~G~~~~~~~l~--------~~l~~~~~~~g~~~~~~---~a~~~l~--~~~~ 239 (376)
T PRK06460 178 ---LE--LGADIVVHSASKFLAGHNDVIAGLAAGYGKLL--------NVIDQMRRTLGTSLDPH---AAYLTLR--GIKT 239 (376)
T ss_pred ---hh--cCCCEEEeecceeccCCCCceEEEEecCHHHH--------HHHHHHHHhcCCCCCHH---HHHHHHh--chhh
Confidence 11 1245899999999851 236799999988874 56655444333333332 2333333 3466
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 045431 338 VHEVIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 338 ~~~~~~~~~~~~~~l~~~l~~~ 359 (433)
++.+.++..++++.+.+.|+++
T Consensus 240 l~~r~~~~~~n~~~l~~~L~~~ 261 (376)
T PRK06460 240 LKIRMDVINRNAEQIAEFLEGH 261 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 7888889999999999999986
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-21 Score=184.20 Aligned_cols=221 Identities=14% Similarity=0.215 Sum_probs=153.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHh-CCcccc
Q 045431 98 YSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIM-GQTGEF 175 (433)
Q Consensus 98 ~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~ 175 (433)
+..| +.....+|++.+|++. + .+++++++|+++++.+ +..++++||+|+++.|+|++....+... +..+
T Consensus 45 Y~R~-~~p~~~~le~~lA~l~----g--~~~v~~~~gg~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~-- 115 (382)
T TIGR02080 45 YSRS-GNPTRDLLQQALAELE----G--GAGAVVTNTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGC-- 115 (382)
T ss_pred ccCC-CCchHHHHHHHHHHHh----C--CCcEEEEcCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcC--
Confidence 4566 3456789999999986 4 4689999999999997 5778999999999999999766555433 2211
Q ss_pred cccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC
Q 045431 176 QKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN 255 (433)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~ 255 (433)
..+..++.++...+...+ .+++++|++++|+||||.+++ +++|+++|+++|+++|+|++|......
T Consensus 116 -------~~v~~~d~~d~~~l~~ai--~~~tklV~l~~p~NPtG~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~~-- 181 (382)
T TIGR02080 116 -------FRVLFVDQGDEQALRAAL--AQKPKLVLIETPSNPLLRVVD---IAKICHLAKAVGAVVVVDNTFLSPALQ-- 181 (382)
T ss_pred -------eEEEEECCCCHHHHHHhc--CcCceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCcccccC--
Confidence 244444322111111111 257899999999999999998 678888899999999999999854322
Q ss_pred CCcccccCCCCcceEEEeccccccc-ccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCC
Q 045431 256 PRSIFEIPGAKEVAIETSSFSKYAG-FTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEG 334 (433)
Q Consensus 256 ~~~~~~~~~~~~~vi~i~S~sK~~~-~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~ 334 (433)
.++ .+ + . .++++|+||.++ .++++.|++++++..+ .+++...........+++.+..+..-
T Consensus 182 -~pl-~~-g-a--Divv~S~sK~l~G~~~~~~G~i~~~~~~~-------~~~l~~~~~~~g~~~sp~~a~l~lr~----- 243 (382)
T TIGR02080 182 -NPL-AL-G-A--DLVLHSCTKYLNGHSDVIAGAVIAKDPQV-------AEELAWWANNLGVTGGAFDSYLTLRG----- 243 (382)
T ss_pred -Cch-hh-C-C--CEEEeecceeccCCCCceeEEEEeCCHHH-------HHHHHHHHHccCCCCCHHHHHHHHcc-----
Confidence 122 11 1 1 388999999885 4678999988754432 35555555544455666665544332
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhc
Q 045431 335 FKAVHEVIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 335 ~~~~~~~~~~~~~~~~~l~~~l~~~ 359 (433)
.+.+..+.++..++...+.+.|+++
T Consensus 244 l~tl~~R~~~~~~na~~~a~~L~~~ 268 (382)
T TIGR02080 244 LRTLVARMRLQQRNAQAIVEYLQTQ 268 (382)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhC
Confidence 3345555677778888999999886
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=5e-21 Score=182.44 Aligned_cols=282 Identities=16% Similarity=0.173 Sum_probs=180.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHH-hCCcccc
Q 045431 98 YSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVI-MGQTGEF 175 (433)
Q Consensus 98 ~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~-~g~~~~~ 175 (433)
+..| +.....+|++++|++. .++.|++++| ++++.+ +.+++++||+|++.+|+|+++...+.. +...|
T Consensus 45 y~ry-~~p~~~~Le~~lA~l~------~~~~v~~~sG-~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G-- 114 (366)
T PRK07582 45 YGRA-SNPTWRALEAALGELE------GAEALVFPSG-MAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLG-- 114 (366)
T ss_pred eECC-CCccHHHHHHHHHHHc------CCCEEEECCH-HHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCe--
Confidence 4456 5668899999999984 3455555555 568876 677899999999999999888765532 11112
Q ss_pred cccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC
Q 045431 176 QKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN 255 (433)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~ 255 (433)
.+++.++.+++.. ...+++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|.... ...
T Consensus 115 -------~~v~~v~~~~~~~-----~~~~~t~lV~le~p~NPtg~v~d---i~~I~~~a~~~g~~lvVD~t~~~~~-~~~ 178 (366)
T PRK07582 115 -------VTVREAPTAGMAE-----AALAGADLVLAETPSNPGLDVCD---LAALAAAAHAAGALLVVDNTTATPL-GQR 178 (366)
T ss_pred -------EEEEEECCCChHH-----HhccCceEEEEECCCCCCCCccC---HHHHHHHHHHcCCEEEEECCCCCcc-ccC
Confidence 3777777653311 12357899999999999998776 8999999999999999999996321 111
Q ss_pred CCcccccCCCCcceEEEeccccccc-ccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCC
Q 045431 256 PRSIFEIPGAKEVAIETSSFSKYAG-FTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEG 334 (433)
Q Consensus 256 ~~~~~~~~~~~~~vi~i~S~sK~~~-~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~ 334 (433)
+ + .+ + . .++++|+||.++ .+|+|+||++++++.+ .+.+..........++++....+...++
T Consensus 179 p--~-~~-g-~--Divv~S~sK~l~G~~g~~~G~v~~~~~~l-------~~~l~~~~~~~g~~~~~~~a~l~~r~l~--- 241 (366)
T PRK07582 179 P--L-EL-G-A--DLVVASDTKALTGHSDLLLGYVAGRDPEL-------MAAVERWRLLAGAIPGPFEAWLAHRSLG--- 241 (366)
T ss_pred c--h-hc-C-C--cEEEecccccccCCCCeeEEEEEcCcHHH-------HHHHHHHHHHhCCCCCHHHHHHHHhccc---
Confidence 2 2 12 1 1 278899999884 3579999999864332 3555555554455566676665555554
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhc-CCe-eec------C----------CCccEEEEECCCCChHHHHHHHHHcCCeEe
Q 045431 335 FKAVHEVIGFYKENTDIIVETFNSL-GFK-VYG------G----------KNAPYVWVQFPGRSSWDVFSEILEKTHVVT 396 (433)
Q Consensus 335 ~~~~~~~~~~~~~~~~~l~~~l~~~-g~~-~~~------~----------~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v 396 (433)
.+..+.++..++...+.+.|+++ .+. +.. | ..|-.+.+.+. + .+...+++++.++..
T Consensus 242 --tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~--~-~~~~~~~~~~l~~~~ 316 (366)
T PRK07582 242 --TLGLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELA--D-AAAAERFVAASRLVV 316 (366)
T ss_pred --cHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeC--C-HHHHHHHHHhCCcce
Confidence 23455567778889999999887 432 221 1 13445666775 2 334445555556544
Q ss_pred cCCCCCCC--------------CCCCeEEEeecc-C-hhHHHHHHHHH
Q 045431 397 TPGSGFGP--------------GGEGFIRVSAFG-H-RGNVLEACKRF 428 (433)
Q Consensus 397 ~~g~~f~~--------------~~~~~iRi~~~~-~-~~~l~~~l~~l 428 (433)
. +..++. ..++.||+|+.. + ++.++.+.++|
T Consensus 317 ~-~~s~G~~~sl~~~~~~~~~~~~~~liR~svGlE~~~dli~dl~~al 363 (366)
T PRK07582 317 A-ATSFGGVHTSADRRARWGDAVPEGFVRLSCGIEDTDDLVADLERAL 363 (366)
T ss_pred e-cccCCCccchhhhHHHcCCCCCCCeEEEEeccCCHHHHHHHHHHHH
Confidence 2 122211 124689999754 2 33344444444
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-21 Score=183.22 Aligned_cols=298 Identities=15% Similarity=0.151 Sum_probs=194.3
Q ss_pred CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCC----
Q 045431 76 PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNV---- 150 (433)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd---- 150 (433)
.+|+++.+++.++... |. +.+++++++++++.+.++. +++++|+|+++++.+ +.+++++||
T Consensus 24 ~~~~~v~~a~~~~~~~---------~~---~~~~~~~~~~~~~a~~~g~--~~~~~~~g~t~al~~al~al~~~Gd~~~~ 89 (363)
T TIGR01437 24 TVSDEVADAQKRGAQN---------YF---EIKELVNKTGEYIANLLGV--EDAVIVSSASAGIAQSVAAVITRGNRYLV 89 (363)
T ss_pred CCCHHHHHHHHHHHhc---------CC---CHHHHHHHHHHHHHHhhCC--CeEEEEcCHHHHHHHHHHHHhcCCCcchh
Confidence 3789999999988642 21 4567788887777665554 478999999999997 688889998
Q ss_pred -----------EEEEeCCCChhh----hhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEEE-E
Q 045431 151 -----------TMAVQDPSYPAY----VDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIF-F 211 (433)
Q Consensus 151 -----------~Vl~~~p~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~-l 211 (433)
+|+++.|.|..+ .......| ..++.++.+ ...+++ +++ .+++++++ +
T Consensus 90 ~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g------------~~~v~v~~~--~~~d~~~le~ai~~~t~ai~~v 155 (363)
T TIGR01437 90 ENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGG------------GKVVEAGYA--NECSAEQLEAAITEKTAAILYI 155 (363)
T ss_pred hcccccccccceEEEECccchhcCCchHHHHHhcC------------CeEEEEcCC--CCCCHHHHHHhcChhceEEEEE
Confidence 999999888765 34555666 356666542 222221 222 36788766 4
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeec
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVI 291 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~ 291 (433)
++||||+|.+.+ +++|.++|++||+++|+|++|+.- .....++ + ..+++.|++|++ +|++.|+++.
T Consensus 156 ~~~~~~~g~~~~---~~~i~~~a~~~gi~vivD~a~~~~-----~~~~~~~-g---~D~~~~S~~K~l--~gp~~G~l~~ 221 (363)
T TIGR01437 156 KSHHCVQKSMLS---VEDAAQVAQEHNLPLIVDAAAEED-----LQKYYRL-G---ADLVIYSGAKAI--EGPTSGLVLG 221 (363)
T ss_pred ecCCCCcCCcCC---HHHHHHHHHHcCCeEEEECCCCCc-----hHHHHHc-C---CCEEEEeCCccc--CCCceEEEEE
Confidence 688999999988 677899999999999999999721 1111222 1 237789999977 6788999998
Q ss_pred cccccccCCcchhHHHHHHHhhc-----cCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeec
Q 045431 292 PKELLFSDGFPVAKDFNRIVCTC-----FNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYG 365 (433)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~ 365 (433)
+++++ +.+....... ....+..++.++...+...+. +..+.+.++++.+.+.|.+. |+.+..
T Consensus 222 ~~~~i--------~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~~~~~~----~~~~~~~~~~~~l~~~L~~i~g~~~~~ 289 (363)
T TIGR01437 222 KKKYI--------EWVKLQSKGIGRAMKVGKENILGLTAALEQYLSTGK----ESGAEMVAKLTPFIEALNTLKGVSASI 289 (363)
T ss_pred cHHHH--------HHHHhccCCCcceeccCHHHHHHHHHHHHHHHccCc----ccHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 87765 2221111000 011233455555655543332 22334445677899999987 887653
Q ss_pred C--CCcc-----EEEEECC--CCChHHHHHHHHHcCC--eEecCCCCCCCCCCCeEEEee-ccChhHHHHHHHHHHHhh
Q 045431 366 G--KNAP-----YVWVQFP--GRSSWDVFSEILEKTH--VVTTPGSGFGPGGEGFIRVSA-FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 366 ~--~~g~-----~~~~~~~--~~~~~~~~~~l~~~~g--i~v~~g~~f~~~~~~~iRi~~-~~~~~~l~~~l~~l~~~l 432 (433)
+ ..+. -+.++.. +.+..++.+.| ++++ |.+++ . ...++.+|+++ +.+++|++.++++|++++
T Consensus 290 ~~~~~~~~~~~~~v~~~~~~~g~~~~~l~~~L-~~~~~~I~~r~--~--~~~~~~~~l~~~~~~~~e~~~~~~~l~~~~ 363 (363)
T TIGR01437 290 VQDEAGRDIARAEIRFDESELGMTAADVVQAL-RQGEPAIYTRG--Y--KANEGIIEIDPRSVTGGQLDIIVERIREIV 363 (363)
T ss_pred ecCCCCCcCceEEEEEeccCCCCCHHHHHHHH-hcCCCCEEEee--e--eecCCeEEEEeecCCHHHHHHHHHHHHHhC
Confidence 2 1111 1223332 44566777666 4446 77765 2 23457899996 457999999999998864
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.6e-21 Score=183.02 Aligned_cols=213 Identities=16% Similarity=0.204 Sum_probs=149.8
Q ss_pred CCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhh----HHHhCCcccccccc
Q 045431 105 QGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDS----SVIMGQTGEFQKDA 179 (433)
Q Consensus 105 ~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~----~~~~g~~~~~~~~~ 179 (433)
+-..+|++.+++++ +. +++++++|+++++.+ +..++++||+|+++.+.|++.... +...|
T Consensus 61 p~~~~le~~la~l~----g~--~~~v~~ssG~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G--------- 125 (390)
T PRK08133 61 PTVTMFQERLAALE----GA--EACVATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARFG--------- 125 (390)
T ss_pred hHHHHHHHHHHHHh----CC--CcEEEECCHHHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHcC---------
Confidence 34678889999886 53 468889999999986 678899999999999999876543 33455
Q ss_pred cccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcc
Q 045431 180 EKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSI 259 (433)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~ 259 (433)
.+++.++.++...+...+ .+++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|+..... .++
T Consensus 126 ---~~v~~vd~~d~~~l~~~i--~~~tklV~ie~p~NptG~v~d---l~~I~~la~~~gi~livD~t~~~~~~~---~pl 194 (390)
T PRK08133 126 ---IETTFVDLTDLDAWRAAV--RPNTKLFFLETPSNPLTELAD---IAALAEIAHAAGALLVVDNCFCTPALQ---QPL 194 (390)
T ss_pred ---cEEEEECCCCHHHHHHhc--CcCCeEEEEECCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCCcccccC---Cch
Confidence 377777765332332222 368899999999999999987 789999999999999999998743221 112
Q ss_pred cccCCCCcceEEEecccccccccccce-eeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHH
Q 045431 260 FEIPGAKEVAIETSSFSKYAGFTGVRL-GWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAV 338 (433)
Q Consensus 260 ~~~~~~~~~vi~i~S~sK~~~~~G~r~-G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~ 338 (433)
.. +..+++.|+||+++.+|.++ ||++++++.+ +.+...........+...+.. +++ +.+.+
T Consensus 195 -~~----g~Divv~S~sK~~~g~g~~~GG~vv~~~~~~--------~~~~~~~~~~g~~~~~~~a~~---~l~--gl~tl 256 (390)
T PRK08133 195 -KL----GADVVIHSATKYLDGQGRVLGGAVVGSKELM--------EEVFGFLRTAGPTLSPFNAWV---FLK--GLETL 256 (390)
T ss_pred -hh----CCcEEEeecceeecCCcceEeEEEEcCHHHH--------HHHHHHHHHhCCCCCHHHHHH---HHc--ccchH
Confidence 11 12388999999998788888 5677776654 444443433333344444333 332 22345
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-CC
Q 045431 339 HEVIGFYKENTDIIVETFNSL-GF 361 (433)
Q Consensus 339 ~~~~~~~~~~~~~l~~~l~~~-g~ 361 (433)
..+.++..+++..+.+.|+++ ++
T Consensus 257 ~~R~~~~~~~a~~la~~L~~~p~v 280 (390)
T PRK08133 257 SLRMEAHSANALALAEWLEAHPGV 280 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCe
Confidence 666677778888999999887 44
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.3e-21 Score=184.36 Aligned_cols=262 Identities=16% Similarity=0.159 Sum_probs=166.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCccccc
Q 045431 98 YSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQ 176 (433)
Q Consensus 98 ~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~ 176 (433)
+..|+ .....+|++.+|++. +. ++.|++++|. +++.+ +..++++||+|+++.|.|++....+........
T Consensus 55 y~r~~-~pt~~~Le~~lA~l~----G~-~~al~~~sG~-~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~g-- 125 (386)
T PRK06767 55 YSRLG-NPTVKLFEERMAVLE----GG-EEALAFGSGM-AAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFM-- 125 (386)
T ss_pred ccCCC-CcchHHHHHHHHHHh----CC-CcEEEECCHH-HHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHHHhhcC--
Confidence 44553 445789999999997 54 3566666665 57765 678899999999999999887666554432110
Q ss_pred ccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCC
Q 045431 177 KDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNP 256 (433)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~ 256 (433)
.++..++..+...+...+ .+++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+.....
T Consensus 126 ------i~~~~~~~~d~~~l~~~i--~~~tklV~lesp~NptG~v~d---l~~I~~la~~~g~~vivD~a~a~~~~~--- 191 (386)
T PRK06767 126 ------ITHSFCDMETEADIENKI--RPNTKLIFVETPINPTMKLID---LKQVIRVAKRNGLLVIVDNTFCSPYLQ--- 191 (386)
T ss_pred ------eEEEEeCCCCHHHHHHhh--CcCceEEEEeCCCCCCceecC---HHHHHHHHHHcCCEEEEECCCcccccC---
Confidence 234334332111111111 357899999999999999998 688888899999999999999742221
Q ss_pred CcccccCCCCcceEEEecccccccccccce-eeeeccccccccCCcchhHHH-HHHHhhccCCCcHHHHHHHHHhcCcCC
Q 045431 257 RSIFEIPGAKEVAIETSSFSKYAGFTGVRL-GWTVIPKELLFSDGFPVAKDF-NRIVCTCFNGASNISQAGGLACLSPEG 334 (433)
Q Consensus 257 ~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~-G~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~q~~~~~~l~~~~ 334 (433)
.++. . +..+++.|+||.++.+|.++ ||++++++.+ ..+ ...........+++.+.++...++
T Consensus 192 ~pl~-~----g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i--------~~~~~~~~~~~g~~~~~~~a~l~~~~L~--- 255 (386)
T PRK06767 192 RPLE-L----GCDAVVHSATKYIGGHGDVVAGVTICKTRAL--------AEKIRPMRKDIGGIMAPFDAWLLLRGLK--- 255 (386)
T ss_pred Cchh-c----CCcEEEecCcceecCCCCceeEEEEeChHHH--------HHHHHHHHHHhCCCCCHHHHHHHHcCCC---
Confidence 1221 1 12378889999998778885 8999988875 332 222222223345555444443333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhc-CCee-ecC----------CCccEEEEECCCC--ChHHHHHHHHHcCCeEecCCC
Q 045431 335 FKAVHEVIGFYKENTDIIVETFNSL-GFKV-YGG----------KNAPYVWVQFPGR--SSWDVFSEILEKTHVVTTPGS 400 (433)
Q Consensus 335 ~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~-~~~----------~~g~~~~~~~~~~--~~~~~~~~l~~~~gi~v~~g~ 400 (433)
.+..+.++.+++...+.+.|+++ ++.. ..| ..|..+.+.+.+. ....++..+ +..++.+.-|.
T Consensus 256 --tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~~~~~~~f~~~l-~~~~~~~s~G~ 332 (386)
T PRK06767 256 --TLAVRMDRHCDNAEKIVSFLKNHDAVEGVWYPEGELASRQMKRGGGVISFSIKGGKEETQAFINDL-HFITIAVSLGD 332 (386)
T ss_pred --cHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCcHHHHHhCCCCCceEEEEEcCCHHHHHHHHHhC-CccEEecCCCC
Confidence 34556677889999999999988 6653 212 1234566667532 233444443 44566665554
Q ss_pred C
Q 045431 401 G 401 (433)
Q Consensus 401 ~ 401 (433)
.
T Consensus 333 ~ 333 (386)
T PRK06767 333 T 333 (386)
T ss_pred c
Confidence 3
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.2e-21 Score=184.60 Aligned_cols=356 Identities=8% Similarity=-0.002 Sum_probs=205.8
Q ss_pred HHHHHHhcCCCCceEEecCCCCC--C-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCC-CCCC
Q 045431 52 RKAAHMLKYPDAEVISLGIGDTT--E-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLG-IEEG 127 (433)
Q Consensus 52 ~~~~~~~~~~~~~~i~l~~g~~~--~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~-~~~~ 127 (433)
.++......+++..||+..|.-. + ..++.+.+++.+++.+.. ...+. ....+.+..+|+.+.+..+ ...+
T Consensus 22 a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~ql~~~~----~~~~~--~~~~~~~~~la~~l~~~~p~~~~~ 95 (420)
T TIGR00700 22 AEGAILEDVDGNRLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFT----HTCFM--VTPYEGYVALAEKLNRIAPGSGPK 95 (420)
T ss_pred eeeeEEEeCCCCEEEECccCHHhccCCCCCHHHHHHHHHHHHhcc----Ccccc--ccCChHHHHHHHHHHHhCCCCCCC
Confidence 33444455667789999777432 2 367899999999997642 11111 0112223344444433122 1236
Q ss_pred cEEEcCChHHHHHH-H--HHhcCCCCEEEEeCCCChhhhhhHHHh-CCcc-cccccccccceEEEeecCcc---------
Q 045431 128 DIFVSDGAKCDISR-L--QIVFGSNVTMAVQDPSYPAYVDSSVIM-GQTG-EFQKDAEKYGKIEYMRCTAE--------- 193 (433)
Q Consensus 128 ~i~~~~G~~~al~~-l--~~l~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~-~~~~~~~~~~~~~~~~~~~~--------- 193 (433)
.+++++++++|+.. + ........+|+..+.+|++.......+ +... ....++.....+..++....
T Consensus 96 ~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (420)
T TIGR00700 96 KSVFFNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQ 175 (420)
T ss_pred EEEEeCCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccc
Confidence 89999999999885 3 222334467888888898865444333 2110 00001111112222332100
Q ss_pred CCcc---cCCC-------CCCCccEEEEcCC-CCccccCCC-HHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccc
Q 045431 194 NGFF---PDLS-------TVARTDIIFFCSP-NNPTGAAAT-REQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFE 261 (433)
Q Consensus 194 ~~~~---~~~~-------~~~~~~~i~l~~p-~nPtG~~~~-~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~ 261 (433)
..+. ..++ ..+++.+|+ ..| +.-+|..++ .+.+++|.++|++||+++|+||+|.++.+.+.+..+..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~iAavi-~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~a~~~ 254 (420)
T TIGR00700 176 LSTDGELAAARAIFVIDVGANNVAALV-IEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEH 254 (420)
T ss_pred hhHHHHHHHHHHHHHhhcCCCcEEEEE-ECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhHHHhh
Confidence 0000 0011 113455554 456 666787664 55599999999999999999999998877664333333
Q ss_pred cCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-hHHHH
Q 045431 262 IPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-KAVHE 340 (433)
Q Consensus 262 ~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~ 340 (433)
+...+| +.+|||.++ +|+|+||++++++++ +.+.......+.+.++++|+++.+.++.... ...++
T Consensus 255 ~~~~pD----i~~lsK~l~-~G~pig~v~~~~~i~--------~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~~~~~ 321 (420)
T TIGR00700 255 EGPEPD----LITTAKSLA-DGLPLSGVTGRAEIM--------DAPAPGGLGGTYAGNPLACAAALAVLAIIESEGLIER 321 (420)
T ss_pred cCCCCC----EEEeecccc-CCcceEEEEecHHHH--------hhcCCCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHH
Confidence 322233 456999998 999999999998875 3333333455667889999999776642111 11122
Q ss_pred HHHHHHHHHHHHHHHHhhcC-CeeecCCCccEEEEECCCC----C----hHHHHHHHHHcCCeEecCCCCCCCCCCCeEE
Q 045431 341 VIGFYKENTDIIVETFNSLG-FKVYGGKNAPYVWVQFPGR----S----SWDVFSEILEKTHVVTTPGSGFGPGGEGFIR 411 (433)
Q Consensus 341 ~~~~~~~~~~~l~~~l~~~g-~~~~~~~~g~~~~~~~~~~----~----~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iR 411 (433)
..+.-+..++.+.+...+++ +..+.+ .|.++|+.+... . ...+...+ .++||.+.|+..|+ +++|
T Consensus 322 ~~~~g~~l~~~L~~l~~~~~~~~~vrg-~G~~~~i~~~~~~~~~~~~~~~~~l~~~~-~~~Gv~i~p~~~f~----~~lR 395 (420)
T TIGR00700 322 ARQIGRLVTDRLTTLKAVDPRIGDVRG-LGAMIAVELVDPGTTEPDAGLAERIATAA-HAAGLLLLTCGMFG----NIIR 395 (420)
T ss_pred HHHHHHHHHHHHHHHHhhCCCEEEeec-cceEEEEEEecCCCCCccHHHHHHHHHHH-HHCCeEEeccCCCC----CEEE
Confidence 22222222222222223333 333444 478888877311 1 12333333 45699999987663 6899
Q ss_pred Eee--ccChhHHHHHHHHHHHhhC
Q 045431 412 VSA--FGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 412 i~~--~~~~~~l~~~l~~l~~~l~ 433 (433)
|++ ..+++++++++++|.++++
T Consensus 396 l~p~l~~~~~~l~~~~~~l~~~l~ 419 (420)
T TIGR00700 396 FLPPLTIGDELLSEGLDILCAILA 419 (420)
T ss_pred EECCCCcCHHHHHHHHHHHHHHhh
Confidence 996 3589999999999998863
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.6e-21 Score=183.79 Aligned_cols=324 Identities=17% Similarity=0.136 Sum_probs=193.9
Q ss_pred CceEEecCCCC-CCCChHHHHHHHHHHHhhcccC-----CCCCCC----CCCCCCHHHHHHHHHHHhccCCCCCCcEEEc
Q 045431 63 AEVISLGIGDT-TEPIPEVITSALAKRSYALSTQ-----EGYSGY----GAEQGEKPLRAAIASTFYKDLGIEEGDIFVS 132 (433)
Q Consensus 63 ~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~~~~-----~~~~~Y----~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~ 132 (433)
.++|+|+++++ ++...+.+.+++.+++.++... .+..+. +...-..++++.+|+++ +.+ +.++++
T Consensus 4 ~~~~~~~s~~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~----~~~-~~l~~~ 78 (370)
T PRK05937 4 SLSIDFVTNDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFH----GAP-EAFIVP 78 (370)
T ss_pred CceEEeECCCccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHh----CCC-eEEEEC
Confidence 46899999987 6777888888888888765210 111111 12334677888888887 653 458888
Q ss_pred CChHHHHHHHHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC---C-CCccE
Q 045431 133 DGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST---V-ARTDI 208 (433)
Q Consensus 133 ~G~~~al~~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~ 208 (433)
+|+...+.++..+.++||.|+++.-.|......++.... ..+.++..+-+.+...+.. . +++.+
T Consensus 79 sG~~a~~~~~~~~~~~~d~ii~d~~~H~sv~~~~~~~~~------------~~~~~~~~d~~~l~~~l~~~~~~~~~~~~ 146 (370)
T PRK05937 79 SGYMANLGLCAHLSSVTDYVLWDEQVHISVVYSLSVISG------------WHQSFRHNDLDHLESLLESCRQRSFGRIF 146 (370)
T ss_pred ChHHHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHHcCC------------ceEEecCCCHHHHHHHHHhhhccCCCcEE
Confidence 888766655555667889999989899888777766531 1222332211111111111 1 23456
Q ss_pred EEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceee
Q 045431 209 IFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGW 288 (433)
Q Consensus 209 i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~ 288 (433)
|++++++|+||.+.| +++|.++|+++|+++++|++|+..........+....+..+..+.+.||||.+|..| .|
T Consensus 147 v~v~~v~s~~G~i~p---l~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~g~~G--~~- 220 (370)
T PRK05937 147 IFVCSVYSFKGTLAP---LEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKALGSMG--AA- 220 (370)
T ss_pred EEEecCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhhhcCc--eE-
Confidence 667899999999999 788888899999999999999853332211111111111223367899999998667 33
Q ss_pred eeccccccccCCcchhHHHHHH-H-hhccCCCcHHHHHHHHHhc---CcCChhHHHHHHHHHHHHHHHHHHHHhhcCCee
Q 045431 289 TVIPKELLFSDGFPVAKDFNRI-V-CTCFNGASNISQAGGLACL---SPEGFKAVHEVIGFYKENTDIIVETFNSLGFKV 363 (433)
Q Consensus 289 l~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~q~~~~~~l---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 363 (433)
++..++.. ..+... . .....+.+++...++.+++ .+.+ +..++++++.++++.+.|...+.
T Consensus 221 vl~~~~~~--------~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l~~~~----~~~~~~l~~l~~~l~~~l~~~~~-- 286 (370)
T PRK05937 221 LLSSSEVK--------QDLMLNSPPLRYSTGLPPHLLISIQVAYDFLSQEG----ELARKQLFRLKEYFAQKFSSAAP-- 286 (370)
T ss_pred EEcCHHHH--------HHHHHhCCCCeecCCCCHHHHHHHHHHHHHHHhCc----HHHHHHHHHHHHHHHHhcCCCCC--
Confidence 34444432 222211 0 1111223444444333333 3222 34456777777777776653211
Q ss_pred ecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 364 YGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 364 ~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
+....+.+++.....+...| .++||.+... + ....+.+|+++ +++++|++.+++.|++++
T Consensus 287 -----~~~~~i~~~~~~~~~~~~~L-~~~gi~v~~~--~-~~~~~~iRis~~~~~t~edid~l~~~L~~~~ 348 (370)
T PRK05937 287 -----GCVQPIFLPGISEQELYSKL-VETGIRVGVV--C-FPTGPFLRVNLHAFNTEDEVDILVSVLATYL 348 (370)
T ss_pred -----CCEEEEEeCChhHHHHHHHH-HHCCeeEEee--C-CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 11222445544444555554 5569988632 1 12346899996 579999999999998875
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=7e-21 Score=186.49 Aligned_cols=355 Identities=12% Similarity=0.077 Sum_probs=207.5
Q ss_pred HHHHHHHhcCCCCceEEecCCCCC--C-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCC-
Q 045431 51 RRKAAHMLKYPDAEVISLGIGDTT--E-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEE- 126 (433)
Q Consensus 51 ~~~~~~~~~~~~~~~i~l~~g~~~--~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~- 126 (433)
+..+......+++..||+..|.-. + ..+|.+.+++.+++.+... .....+ ..+.+..+|+.|....+...
T Consensus 42 ~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~-~~~~~~-----~~~~~~~la~~L~~~~p~~~~ 115 (451)
T PRK06918 42 SANGALVTDVDGNQYIDFAGAIGTINVGHSHPKVKEALHKQVDQYIH-TGFNVM-----MYEPYIELAEKLAALAPGSFD 115 (451)
T ss_pred eccccEEEeCCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHHhccC-cccccc-----ccHHHHHHHHHHHHhCCCCCC
Confidence 344555556678889999777532 2 3678999999999875321 111111 12444555555544223222
Q ss_pred CcEEEcCChHHHHHH-H--HHhcCCCCEEEEeCCCChhhhhhHHHh-CCcccc-cccccccceEEEeecCcc----CCcc
Q 045431 127 GDIFVSDGAKCDISR-L--QIVFGSNVTMAVQDPSYPAYVDSSVIM-GQTGEF-QKDAEKYGKIEYMRCTAE----NGFF 197 (433)
Q Consensus 127 ~~i~~~~G~~~al~~-l--~~l~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~-~~~~~~~~~~~~~~~~~~----~~~~ 197 (433)
+.+++++++++|... + ........+|+..+.+|++.......+ +....+ ..++.....+..+|.... .+..
T Consensus 116 ~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (451)
T PRK06918 116 KKVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLT 195 (451)
T ss_pred CEEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccccCc
Confidence 589999999999886 3 222334467888888898865444333 211101 001111112222322100 0000
Q ss_pred c---------CC----CC--CCCccEEEEcCCCCcc-ccCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCccc
Q 045431 198 P---------DL----ST--VARTDIIFFCSPNNPT-GAAA-TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIF 260 (433)
Q Consensus 198 ~---------~~----~~--~~~~~~i~l~~p~nPt-G~~~-~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~ 260 (433)
. .+ .. .++..+.++..|.... |.++ +.+.+++|.++|++||+++|+||+|.++.+.+.+.++.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~ 275 (451)
T PRK06918 196 EEQYDDFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIE 275 (451)
T ss_pred hHHHHHHHHHHHHHHHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCceehhH
Confidence 0 00 00 1223344556785444 6645 55669999999999999999999999887766544444
Q ss_pred ccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcC---cCCh-h
Q 045431 261 EIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLS---PEGF-K 336 (433)
Q Consensus 261 ~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~~~-~ 336 (433)
.++..+| +.||||.++ +|+|+||++++++++ +.+.......+.+.++++|.++.+.++ +... +
T Consensus 276 ~~~v~pD----i~t~sK~l~-~G~pig~v~~~~~i~--------~~~~~~~~~~T~~g~~l~~aaa~a~l~~i~~~~~~~ 342 (451)
T PRK06918 276 HFDVVPD----LITVSKSLG-AGVPISGVIGRKEIM--------DESAPGELGGTYAGSPLGCAAALAVLDIIEKENLND 342 (451)
T ss_pred hcCCCCC----EEeeehhhc-CCCccEEEEEcHHHH--------hccCCCCcCcCCCcCHHHHHHHHHHHHHHHHCCHHH
Confidence 4443344 448999998 999999999998875 333333445566789999999776665 2222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC-CeeecCCCccEEEEECCC----CC----hHHHHHHHHHcCCeEecCCCCCCCCCC
Q 045431 337 AVHEVIGFYKENTDIIVETFNSLG-FKVYGGKNAPYVWVQFPG----RS----SWDVFSEILEKTHVVTTPGSGFGPGGE 407 (433)
Q Consensus 337 ~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~~~g~~~~~~~~~----~~----~~~~~~~l~~~~gi~v~~g~~f~~~~~ 407 (433)
+++.+.+.+.++.+.+. .+++ +..+.+.++++.|..... .. ...+... +.++||.+.|+..|+
T Consensus 343 ~~~~~g~~l~~~l~~l~---~~~~~~~~vrg~G~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~Gvlv~~~~~~~---- 414 (451)
T PRK06918 343 RAIELGKVVMNRFEEMK---NKYNCIGDVRGLGAMCAFELVQDRKTKEPDKTLTANICKE-ANKRGLLLLSAGTYG---- 414 (451)
T ss_pred HHHHHHHHHHHHHHHHH---hhCCCceeeccceeEEEEEEccCCCcCCCcHHHHHHHHHH-HHHCCeEEeecCCCC----
Confidence 23333333332222222 2232 222445566666655411 11 1233333 345699999976553
Q ss_pred CeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 408 GFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 408 ~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
+++||++ ..+++++++++++|.+++
T Consensus 415 ~~lrl~p~l~~t~~~id~~l~~l~~~l 441 (451)
T PRK06918 415 NVIRVLMPLVITDEQLEEGLTIIEESL 441 (451)
T ss_pred CEEEEECCCccCHHHHHHHHHHHHHHH
Confidence 6899996 468999999999999876
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-21 Score=189.39 Aligned_cols=347 Identities=9% Similarity=0.057 Sum_probs=208.8
Q ss_pred HHHHhcCCCCceEEecCCCCCC---CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEE
Q 045431 54 AAHMLKYPDAEVISLGIGDTTE---PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIF 130 (433)
Q Consensus 54 ~~~~~~~~~~~~i~l~~g~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~ 130 (433)
+......++...|||..|.... ..+|.+.+++.+++.+... ....+ ......+|.+.++++. + .+.++
T Consensus 66 G~~l~d~dG~~ylD~~sg~~~~~~Gh~~p~v~~ai~~ql~~~~~--~~~~~-~~~~~~~la~~L~~~~----~--~~~~~ 136 (474)
T PLN02624 66 GSRIWDPEGKKYLDFLSAYSAVNQGHCHPKIIKALTEQAEKLTL--SSRAF-YNDKFPEFAEYLTSMF----G--YDMVL 136 (474)
T ss_pred eCEEEECCCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhcCC--ccccc-CCHHHHHHHHHHHhhc----C--CCeEE
Confidence 3334445677889998775433 3589999999999986432 11122 2334556666666653 3 36888
Q ss_pred EcCChHHHHHHHHHhcC----------CCC-EEEEeCCCChhhhhhHHHhCCcc-cccccccccceEEEeecCccCCccc
Q 045431 131 VSDGAKCDISRLQIVFG----------SNV-TMAVQDPSYPAYVDSSVIMGQTG-EFQKDAEKYGKIEYMRCTAENGFFP 198 (433)
Q Consensus 131 ~~~G~~~al~~l~~l~~----------~gd-~Vl~~~p~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (433)
++++++++......+.+ ++. .|+...-+|.+............ ....++.....+..++.++...+..
T Consensus 137 f~~SGseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 216 (474)
T PLN02624 137 PMNTGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDFGDLDALEK 216 (474)
T ss_pred EeCChHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCCCCHHHHHH
Confidence 88888888875221211 133 57777777776543332222111 1111111112233444432111111
Q ss_pred CCCC-CCCccEEEEcCCCCccccCCCHH-HHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccc
Q 045431 199 DLST-VARTDIIFFCSPNNPTGAAATRE-QLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFS 276 (433)
Q Consensus 199 ~~~~-~~~~~~i~l~~p~nPtG~~~~~~-~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~s 276 (433)
.++. ..++.+|++..++|++|.+++.+ .+++|.++|++||+++|.||+|.++...+..... +..+.... +.++|
T Consensus 217 ~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a~-~~~~i~pD---iv~ls 292 (474)
T PLN02624 217 IFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLAC-DWEEVRPD---VVILG 292 (474)
T ss_pred HHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchhhH-HhcCCCCC---EEEec
Confidence 1211 24577777778899999988766 5999999999999999999999876555542222 11122222 33478
Q ss_pred ccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHH
Q 045431 277 KYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETF 356 (433)
Q Consensus 277 K~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l 356 (433)
|.+|.+++++|+++++++++ ..+.......+.+.+++.+.++.+.|+.... .++.++..++.+.+.+.|
T Consensus 293 K~lggG~~pigav~~~~~i~--------~~~~~~~~~~T~~g~pl~~aaa~aaLe~l~~---~~l~~~~~~~~~~l~~~L 361 (474)
T PLN02624 293 KALGGGVIPVSAVLADKDVM--------LCIKPGEHGSTFGGNPLASAVAMAALQVVQD---EKLAERSAKLGQELRDQL 361 (474)
T ss_pred ccccCCCCcceeeeecHHHH--------hHhccCCcCCCCCCCHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHHH
Confidence 99996669999999987764 3333333444556788999988888863211 233444555555565555
Q ss_pred hhcC------CeeecCCCccEEEEECCC-----CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe--eccChhHHHH
Q 045431 357 NSLG------FKVYGGKNAPYVWVQFPG-----RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS--AFGHRGNVLE 423 (433)
Q Consensus 357 ~~~g------~~~~~~~~g~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~~~l~~ 423 (433)
+++. +..+.+ .|.++.+.+.. ....++...+ .++||.+.|+ +.+++||+ +..+++++++
T Consensus 362 ~~l~~~~~~~i~~vrg-~G~~~~i~l~~~~~~~~~a~~~~~~L-~e~GV~v~p~------~~~~lR~~p~l~~t~e~id~ 433 (474)
T PLN02624 362 QKIQKQFPKLIKEVRG-RGLLNAVVLNSPKLGPVSAYDVCLKL-KERGLLAKPT------HDTIIRLAPPLSISEDELQE 433 (474)
T ss_pred HHHHHhCCCceEEEEe-eEEEEEEEecCCCcChHHHHHHHHHH-HhCCeEEecC------CCCEEEEECCccCCHHHHHH
Confidence 5431 222333 34454454532 1234556555 5569999875 24789998 4679999999
Q ss_pred HHHHHHHhh
Q 045431 424 ACKRFKHLY 432 (433)
Q Consensus 424 ~l~~l~~~l 432 (433)
++++|++++
T Consensus 434 ~l~~L~~~l 442 (474)
T PLN02624 434 CSKALSDVL 442 (474)
T ss_pred HHHHHHHHH
Confidence 999998875
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-20 Score=182.81 Aligned_cols=353 Identities=11% Similarity=0.056 Sum_probs=214.7
Q ss_pred HHHHHhcCCCCceEEecCCCC--C-CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCC-CCCc
Q 045431 53 KAAHMLKYPDAEVISLGIGDT--T-EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGI-EEGD 128 (433)
Q Consensus 53 ~~~~~~~~~~~~~i~l~~g~~--~-~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~-~~~~ 128 (433)
.+......+++..+|+..|.. . -..+|.+.+++.+++.+... ..+. ....+....+++.+....+. ..+.
T Consensus 30 ~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~----~~~~--~~~~~~~~~la~~l~~~~p~~~~~~ 103 (421)
T PRK06777 30 ENATLWDVEGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFTH----TAYQ--IVPYASYVTLAERINALAPIDGPAK 103 (421)
T ss_pred ecCEEEeCCCCEEEEcccCHHhhccCCCCHHHHHHHHHHHhhccc----cccc--ccCChHHHHHHHHHHHhCCCCCCce
Confidence 344445566778999977642 2 23678899999999876421 1111 01122333444444332232 2468
Q ss_pred EEEcCChHHHHHH-H--HHhcCCCCEEEEeCCCChhhhhhHHHh-CCc-ccccccccccceEEEeecCccC-Cc-----c
Q 045431 129 IFVSDGAKCDISR-L--QIVFGSNVTMAVQDPSYPAYVDSSVIM-GQT-GEFQKDAEKYGKIEYMRCTAEN-GF-----F 197 (433)
Q Consensus 129 i~~~~G~~~al~~-l--~~l~~~gd~Vl~~~p~~~~~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~-~~-----~ 197 (433)
+++++++++|... + ........+|+..+.+|++.......+ +.. .....++.....+..++..... +. .
T Consensus 104 ~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 183 (421)
T PRK06777 104 TAFFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEAL 183 (421)
T ss_pred EEEeCCcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCcCHHHHH
Confidence 9999999999885 3 222334467888888888875444332 211 1101111111122222222110 00 0
Q ss_pred cCCCC-------CCCccEEEEcCC-CCcccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcc
Q 045431 198 PDLST-------VARTDIIFFCSP-NNPTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEV 268 (433)
Q Consensus 198 ~~~~~-------~~~~~~i~l~~p-~nPtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~ 268 (433)
..+++ ..++.+|++ .| ++..|. +++.+.+++|.++|++||+++|.||+|.++.+.+.+.....++..+|
T Consensus 184 ~~l~~~~~~~~~~~~iaavi~-Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~pD- 261 (421)
T PRK06777 184 SSVERLFKADIAPDQVAAILL-EPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDVKPD- 261 (421)
T ss_pred HHHHHHHHhccCCCceEEEEE-CCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchhhhhhcCCCCC-
Confidence 00111 134555554 55 777885 57899999999999999999999999998866665433333432344
Q ss_pred eEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHH
Q 045431 269 AIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKEN 348 (433)
Q Consensus 269 vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 348 (433)
+ .++||.++ +|+|+||++++++++ +.+.......+.+.++++++++.+.|+.... +++.++++++
T Consensus 262 i---v~~sK~l~-~G~pigav~~~~~i~--------~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~---~~l~~~~~~~ 326 (421)
T PRK06777 262 L---ITMAKSLG-GGMPISAVVGRAEVM--------DAPAPGGLGGTYAGNPLAVAAALAVLDVIAE---EKLCQRALIL 326 (421)
T ss_pred E---Eeeehhhc-CCCceEEEEEcHHHH--------hccCCCCCCCCCCcCHHHHHHHHHHHHHHHh---ccHHHHHHHH
Confidence 2 27999998 999999999998875 3333233445666899999999999863221 4566777788
Q ss_pred HHHHHHHHhhc----C-CeeecCCCccEEE-EECC--CCChH----HHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--
Q 045431 349 TDIIVETFNSL----G-FKVYGGKNAPYVW-VQFP--GRSSW----DVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA-- 414 (433)
Q Consensus 349 ~~~l~~~l~~~----g-~~~~~~~~g~~~~-~~~~--~~~~~----~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~-- 414 (433)
.+++.+.|+++ + +..+.+.+.++.+ +..+ +.... .+...+ .++||.+.|+..|+ +++||+.
T Consensus 327 g~~l~~~L~~l~~~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~-~~~Gv~i~~~~~~g----~~lr~~ppl 401 (421)
T PRK06777 327 GAHLVEVLEKAKASCPAIVDIRARGSMVAVEFNDPQTGKPSPEFTRQYQRQA-LEEGLLLLSCGVHG----NVIRFLYPL 401 (421)
T ss_pred HHHHHHHHHHHHHhCCCeEEecCceEEEEEEEecCccCCccHHHHHHHHHHH-HhCCeEEeecCCCC----CEEEEeCCC
Confidence 88888877764 2 2334555555432 3222 11122 233333 45699999986553 5899995
Q ss_pred ccChhHHHHHHHHHHHhhC
Q 045431 415 FGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 415 ~~~~~~l~~~l~~l~~~l~ 433 (433)
..+++++++++++|.+++.
T Consensus 402 ~i~~~~i~~~~~~l~~~l~ 420 (421)
T PRK06777 402 TIPDAQFSKALNILTRLLA 420 (421)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 6799999999999998763
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-20 Score=179.41 Aligned_cols=222 Identities=14% Similarity=0.198 Sum_probs=156.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCccccc
Q 045431 98 YSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQ 176 (433)
Q Consensus 98 ~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~ 176 (433)
+..|+ ......|++++|++. +. +++++++|+++++.+ +..++++||+|++++|+|++....+......+.
T Consensus 46 Y~R~~-~pt~~~L~~~lA~l~----g~--~~~i~~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~g-- 116 (386)
T PRK08045 46 YSRRG-NPTRDVVQRALAELE----GG--AGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGC-- 116 (386)
T ss_pred eeCCC-CccHHHHHHHHHHHh----CC--CeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCC--
Confidence 45663 456789999999986 42 469999999999997 577899999999999999975544443321111
Q ss_pred ccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCC
Q 045431 177 KDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNP 256 (433)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~ 256 (433)
.++..++..+...+...+ .+++++|++++|+||||.+++ +++|.++|+++|+++|+|++|......
T Consensus 117 ------i~v~~vd~~d~e~l~~~l--~~~tklV~l~sP~NPtG~v~d---i~~I~~ia~~~g~~vivDeay~~~~~~--- 182 (386)
T PRK08045 117 ------YRVLFVDQGDEQALRAAL--AEKPKLVLVESPSNPLLRVVD---IAKICHLAREAGAVSVVDNTFLSPALQ--- 182 (386)
T ss_pred ------eEEEEeCCCCHHHHHHhc--ccCCeEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCccccC---
Confidence 244444321111111111 257899999999999999998 678888899999999999999854321
Q ss_pred CcccccCCCCcceEEEeccccccc-ccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh
Q 045431 257 RSIFEIPGAKEVAIETSSFSKYAG-FTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF 335 (433)
Q Consensus 257 ~~~~~~~~~~~~vi~i~S~sK~~~-~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~ 335 (433)
.++ .. + .| +++.|++|.++ .++.+.|+++++++.+ .+.+...........+++.+..+...|+.
T Consensus 183 ~pl-~~-g-aD--ivv~S~tK~l~G~~d~~~G~vi~~~~~~-------~~~l~~~~~~~g~~~~p~~~~l~~rgl~t--- 247 (386)
T PRK08045 183 NPL-AL-G-AD--LVLHSCTKYLNGHSDVVAGVVIAKDPDV-------VTELAWWANNIGVTGGAFDSYLLLRGLRT--- 247 (386)
T ss_pred Cch-hh-C-CC--EEEeecceeccCCCCceeEEEEeCcHHH-------HHHHHHHHHhcCCCCCHHHHHHHHhhhcc---
Confidence 222 12 1 12 88999999885 4567789988753322 35555555555556788888777766653
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhc
Q 045431 336 KAVHEVIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 336 ~~~~~~~~~~~~~~~~l~~~l~~~ 359 (433)
+..+.++..+++..+.+.|+++
T Consensus 248 --l~~R~~~~~~na~~la~~L~~~ 269 (386)
T PRK08045 248 --LVPRMELAQRNAQAIVKYLQTQ 269 (386)
T ss_pred --HHHHHHHHHHHHHHHHHHHHcC
Confidence 5777888889999999999987
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-20 Score=180.84 Aligned_cols=282 Identities=16% Similarity=0.166 Sum_probs=184.1
Q ss_pred CCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHH----HhCCcccccc
Q 045431 103 AEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSV----IMGQTGEFQK 177 (433)
Q Consensus 103 ~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~----~~g~~~~~~~ 177 (433)
......+|++.++++. +. +..++++++++|+.+ +..++++||+|+++.++|.+....+. ..|
T Consensus 38 ~~p~~~~le~~la~l~----g~--~~a~~~~sG~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g------- 104 (369)
T cd00614 38 GNPTVDALEKKLAALE----GG--EAALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLG------- 104 (369)
T ss_pred CChhHHHHHHHHHHHH----CC--CCEEEEcCHHHHHHHHHHHHcCCCCEEEECCCCcchHHHHHHHHHhhcC-------
Confidence 4556789999999986 43 456666777888886 67888999999999999988765443 334
Q ss_pred cccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCC
Q 045431 178 DAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPR 257 (433)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~ 257 (433)
.++..++.++.+.+...+ .+++++|++.+|+||+|.+.+ +++|.++|++||+++|+|++|+..... .
T Consensus 105 -----~~~~~v~~~d~~~l~~~i--~~~~~~v~~e~~~np~g~~~d---l~~i~~la~~~g~~livD~t~~~~~~~---~ 171 (369)
T cd00614 105 -----IEVTFVDPDDPEALEAAI--KPETKLVYVESPTNPTLKVVD---IEAIAELAHEHGALLVVDNTFATPYLQ---R 171 (369)
T ss_pred -----eEEEEeCCCCHHHHHHhc--CCCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcchhcC---C
Confidence 366666654211221112 247899999999999999988 788999999999999999999853321 1
Q ss_pred cccccCCCCcceEEEecccccccccc-cceeeeeccc-cccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh
Q 045431 258 SIFEIPGAKEVAIETSSFSKYAGFTG-VRLGWTVIPK-ELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF 335 (433)
Q Consensus 258 ~~~~~~~~~~~vi~i~S~sK~~~~~G-~r~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~ 335 (433)
++ .+ +..+++.|+||.++.+| .+.||+++++ +++ +.+...........+++.+.++...++
T Consensus 172 ~~-~~----g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~--------~~l~~~~~~~g~~~~p~~a~~~l~~l~---- 234 (369)
T cd00614 172 PL-EL----GADIVVHSATKYIGGHSDVIAGVVVGSGEALI--------QRLRFLRLALGTILSPFDAWLLLRGLK---- 234 (369)
T ss_pred hh-hh----CCcEEEeccceeccCCCCceEEEEEeCcHHHH--------HHHHHHHHhhCCCCCHHHHHHHHcCCC----
Confidence 11 11 23488999999997555 7899999987 553 555554443444466666665555553
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhc-CCe-eecC----------------CCccEEEEECCCCChHHHHHHHHHcCCeEe-
Q 045431 336 KAVHEVIGFYKENTDIIVETFNSL-GFK-VYGG----------------KNAPYVWVQFPGRSSWDVFSEILEKTHVVT- 396 (433)
Q Consensus 336 ~~~~~~~~~~~~~~~~l~~~l~~~-g~~-~~~~----------------~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v- 396 (433)
.+..+.++..++.+.+.+.|+++ ++. +..| ..|..+.+.+.+ + .+....+++.-.+.-
T Consensus 235 -tl~~r~~~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~-~-~~~~~~f~~~l~~~~~ 311 (369)
T cd00614 235 -TLPLRMERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKG-G-LEAAKKFLNALKLFSL 311 (369)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCC-C-HHHHHHHHHcCCcceE
Confidence 23556777788999999999987 343 2222 235567777753 2 233334444433331
Q ss_pred --cCCCCCC---------------------CCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 397 --TPGSGFG---------------------PGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 397 --~~g~~f~---------------------~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
.-|.... .-.++.+|||++. |+.+.+++.|.+++
T Consensus 312 ~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~liR~svGl--E~~~dl~~dl~~al 368 (369)
T cd00614 312 AVSLGGVESLVEHPASMTHSQLPPEERAAAGITPGLVRLSVGI--EDVEDLIADLEQAL 368 (369)
T ss_pred cccCCCCceeeeCCcccccccCCHHHHHhcCCCCCeEEEEeCc--CCHHHHHHHHHHhh
Confidence 1111110 0114689999866 45666666666665
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.1e-21 Score=184.60 Aligned_cols=343 Identities=8% Similarity=0.070 Sum_probs=210.2
Q ss_pred cCCCCceEEecCCCCCCC---ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCCh
Q 045431 59 KYPDAEVISLGIGDTTEP---IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGA 135 (433)
Q Consensus 59 ~~~~~~~i~l~~g~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~ 135 (433)
..++...||+..+..... .+|.+.+++.+.+.+... ....+ ......+|.+.+++++ + .+.+++++++
T Consensus 33 ~~~g~~~lD~~s~~~~~~~Gh~~p~v~~a~~~~~~~~~~--~~~~~-~~~~~~~l~~~l~~~~----~--~~~~~~~~SG 103 (401)
T TIGR01885 33 DVEGKRYLDFLSAYSAVNQGHCHPKIVKALTEQAQKLTL--SSRAF-YNDVFGEFAEYVTKLF----G--YDKVLPMNTG 103 (401)
T ss_pred eCCCCEEEEcccCHhhccCCCCCHHHHHHHHHHHHhccc--ccccc-CCHHHHHHHHHHHhhc----C--CCEEEEeCcc
Confidence 345678999988754433 489999999998876431 11112 2233456666666654 4 3578888888
Q ss_pred HHHHHH-HHHh---------cCC-CCEEEEeCCCChhh-hhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-
Q 045431 136 KCDISR-LQIV---------FGS-NVTMAVQDPSYPAY-VDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST- 202 (433)
Q Consensus 136 ~~al~~-l~~l---------~~~-gd~Vl~~~p~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 202 (433)
++++.. +..+ +.+ .+.|+..+-+|.+. ...+...+.......++.....+..++.++...+...++.
T Consensus 104 s~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~ 183 (401)
T TIGR01885 104 AEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPYNNLEALEEALEDH 183 (401)
T ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCCCCHHHHHHHHHhc
Confidence 888775 4322 123 46778888888763 3333333311100011111123344444321111111211
Q ss_pred CCCccEEEEcCCCCccccCCC-HHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccc
Q 045431 203 VARTDIIFFCSPNNPTGAAAT-REQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGF 281 (433)
Q Consensus 203 ~~~~~~i~l~~p~nPtG~~~~-~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~ 281 (433)
.+++.+|++..+++++|...+ .+.+++|.++|++||+++|+||+|..+.+.+.+... +..+..+.++ ++||.++.
T Consensus 184 ~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~~~-~~~~~~~di~---~~gK~l~~ 259 (401)
T TIGR01885 184 GPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCV-DHENVKPDIV---LLGKALSG 259 (401)
T ss_pred CCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHH-hhcCCCCCEE---EeeccccC
Confidence 135566665566999999886 447999999999999999999999876655543322 2222222233 46899985
Q ss_pred cccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCC
Q 045431 282 TGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGF 361 (433)
Q Consensus 282 ~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 361 (433)
+++|+|+++++++++ +.+.......+.+.+++++.++.+.|+.... +.+.++.++..+++.+.|++++.
T Consensus 260 g~~~ig~v~~~~~i~--------~~~~~~~~~~t~~~~p~~~~aa~a~L~~i~~---~~l~~~~~~~~~~~~~~L~~l~~ 328 (401)
T TIGR01885 260 GVYPVSAVLADDDVM--------LTIKPGEHGSTYGGNPLACAVAVAALEVLEE---EKLAENAEKLGEIFRDQLKKLPK 328 (401)
T ss_pred CCCCcEEEEEcHHHH--------hhccCCCCCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHhccC
Confidence 558999999998875 3333212223445678889888888863322 23445677778889999988743
Q ss_pred ee---ecCCCccEEEEECCCC----ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 362 KV---YGGKNAPYVWVQFPGR----SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 362 ~~---~~~~~g~~~~~~~~~~----~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
.+ ..+ .|.+..+.++.. ...++...+. ++||.+.|+ +++.+||+. ..+++++++++++|++++
T Consensus 329 ~~~~~~~g-~g~~~~i~~~~~~~~~~~~~l~~~l~-~~Gv~v~~~------~~~~lRi~p~l~~t~~~i~~~l~~l~~~l 400 (401)
T TIGR01885 329 PIITEVRG-RGLLNAIVIDESKTGRTAWDLCLKLK-EKGLLAKPT------HGNIIRLAPPLVITEEQLDEGLEIIKKVI 400 (401)
T ss_pred CceeEEee-cCeeEEEEeccCcchhHHHHHHHHHH-hCCEEEEec------CCCEEEEeCCccCCHHHHHHHHHHHHHHh
Confidence 33 223 344444444421 3455666665 559999764 246899995 569999999999999887
Q ss_pred C
Q 045431 433 K 433 (433)
Q Consensus 433 ~ 433 (433)
.
T Consensus 401 ~ 401 (401)
T TIGR01885 401 D 401 (401)
T ss_pred C
Confidence 4
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.7e-20 Score=179.01 Aligned_cols=221 Identities=18% Similarity=0.191 Sum_probs=148.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhC-Ccccc
Q 045431 98 YSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMG-QTGEF 175 (433)
Q Consensus 98 ~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g-~~~~~ 175 (433)
+..|+ ......|++.+|++. +. ++++++++| ++++.+ +..++++||+|+++.|+|++....+.... ..+
T Consensus 54 y~R~~-~p~~~~Le~~lA~l~----g~-~~~v~~~sG-~~Ai~~~l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g-- 124 (405)
T PRK08776 54 YTRSG-NPTRDLLGEALAELE----GG-AGGVITATG-MGAINLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKKGH-- 124 (405)
T ss_pred ccCCC-ChHHHHHHHHHHHHh----CC-CceEEEcCH-HHHHHHHHHHHhCCCCEEEEccCCchHHHHHHHHHHHhcC--
Confidence 34443 234577888888875 54 456666665 688887 57789999999999999987443333221 111
Q ss_pred cccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC
Q 045431 176 QKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN 255 (433)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~ 255 (433)
..++.++..+...+...+ .+++++|++++|+||||.+.+ +++|+++|+++|++||+|++|+....
T Consensus 125 -------~~v~~v~~~d~~~l~~~i--~~~tklV~l~~P~NPtG~v~d---l~~I~~la~~~gi~vIvD~a~a~~~~--- 189 (405)
T PRK08776 125 -------FALITADLTDPRSLADAL--AQSPKLVLIETPSNPLLRITD---LRFVIEAAHKVGALTVVDNTFLSPAL--- 189 (405)
T ss_pred -------cEEEEECCCCHHHHHHhc--CcCCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCCccccc---
Confidence 255566543211221111 257899999999999999866 88999999999999999999984211
Q ss_pred CCcccccCCCCcceEEEeccccccccc-ccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCC
Q 045431 256 PRSIFEIPGAKEVAIETSSFSKYAGFT-GVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEG 334 (433)
Q Consensus 256 ~~~~~~~~~~~~~vi~i~S~sK~~~~~-G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~ 334 (433)
..++ .+ + ..+++.|.+|.++.+ ++..|+++++++.+ .+++...........+++.+.++.. +
T Consensus 190 ~~pl-~~-g---aDivv~S~tK~l~g~~~~~~G~vv~~~~~l-------~~~l~~~~~~~g~~~s~~~a~l~~~-----g 252 (405)
T PRK08776 190 QKPL-EF-G---ADLVLHSTTKYINGHSDVVGGAVVARDAEL-------HQQLVWWANALGLTGSPFDAFLTLR-----G 252 (405)
T ss_pred CCcc-cc-c---CCEEEecCceeecCCCCceEEEEEeCCHHH-------HHHHHHHHHhcCCCCCHHHHHHHHh-----h
Confidence 1222 12 1 128899999999744 46789888764433 3455444433333456666655443 3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhc
Q 045431 335 FKAVHEVIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 335 ~~~~~~~~~~~~~~~~~l~~~l~~~ 359 (433)
.++++.+.++..++...+.+.|+++
T Consensus 253 l~tl~~r~~~~~~na~~la~~L~~~ 277 (405)
T PRK08776 253 LRTLDARLRVHQENADAIAALLDGH 277 (405)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHcC
Confidence 3567888889999999999999886
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-20 Score=183.14 Aligned_cols=334 Identities=13% Similarity=0.100 Sum_probs=216.8
Q ss_pred ecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCC---CCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH---
Q 045431 68 LGIGDTTEPIPEVITSALAKRSYALSTQEGYSGY---GAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR--- 141 (433)
Q Consensus 68 l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y---~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~--- 141 (433)
++.|+++...|+.+.+++.+.... ..++.| ....|..+++.++.+++++..+.+...+..++|+.+.+..
T Consensus 73 ~g~G~~~~~~~p~i~~~~~~~~~~----~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~~~~l~~~~GA~a~~~~l~~ 148 (481)
T PRK04366 73 YPLGSCTMKYNPKINEKVARLPGF----AELHPLQPEETVQGALELMYELQEWLKEITGMDAVTLQPAAGAHGELTGLLM 148 (481)
T ss_pred ecCcccCCCCCHHHHHHHHhCcch----hcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCCceEEEeCcHHHHHHHHHHH
Confidence 677877788899888888875221 345667 3467999999999999988667665566666777766553
Q ss_pred HH-HhcCCCC----EEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEEEEcC
Q 045431 142 LQ-IVFGSNV----TMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIFFCS 213 (433)
Q Consensus 142 l~-~l~~~gd----~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~~ 213 (433)
+. .++++|| +|++++|+|+.+...+...| .+++.++.+.++..+.+ ++. .+++++|++++
T Consensus 149 ~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~~~~~~G------------~~vv~v~~~~~~~~D~e~L~~~i~~~t~~V~v~~ 216 (481)
T PRK04366 149 IRAYHEARGDTKRTEVIVPDSAHGTNPASAAMAG------------FKVVEIPSNEDGLVDLEALKAAVGEDTAALMLTN 216 (481)
T ss_pred HHHHhhccCcCCCCEEEEcCCccHhHHHHHHHcC------------CEEEEeecCCCCCcCHHHHHhhcccCCeEEEEeC
Confidence 22 3457776 99999999999998888888 47888887543322222 221 35788999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccc----ccceeee
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFT----GVRLGWT 289 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~----G~r~G~l 289 (433)
|+ |||.. .+++++|+++|+++|+++++|.++..... + ..+...+ +..++++|.+|+++.| |..+|++
T Consensus 217 Pn-~tG~~--~~dl~eI~~~a~~~gal~iVD~a~~~~~~-g-~~~~~~~----GaD~~~~~~hK~l~~P~g~Ggp~~G~l 287 (481)
T PRK04366 217 PN-TLGLF--ERNILEIAEIVHEAGGLLYYDGANLNAIL-G-KARPGDM----GFDVVHLNLHKTFSTPHGGGGPGSGPV 287 (481)
T ss_pred CC-Ccccc--chHHHHHHHHHHHcCCEEEEEecChhhhc-c-cCCcccc----CCCEEEEechhhcCCCCCCCCCCeeee
Confidence 98 99964 35699999999999999999999862211 1 1111122 2348899999998643 4457888
Q ss_pred eccccccccCCcchh--------------HHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHH
Q 045431 290 VIPKELLFSDGFPVA--------------KDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVET 355 (433)
Q Consensus 290 ~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 355 (433)
.+++.+.......+. +.+++.+. ...+.+...++..++...+.+.+++..++...+.+++.+.
T Consensus 288 ~~~~~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a---~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~ 364 (481)
T PRK04366 288 GVKEELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRA---FYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKAR 364 (481)
T ss_pred eehhhhHhhCCCCeeeccCCceeecccccccCCCccc---ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887765421100000 00011111 1123344455556665555566777778888889999999
Q ss_pred HhhcCCeeecCCCc-cEEEEEC-----CCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHH
Q 045431 356 FNSLGFKVYGGKNA-PYVWVQF-----PGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKR 427 (433)
Q Consensus 356 l~~~g~~~~~~~~g-~~~~~~~-----~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~ 427 (433)
|+++ +.+..+... .-+.+.+ ++.+..++.++|.++ ||.+. +..|.....+.+|+++ +.+.+||+.+++.
T Consensus 365 L~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~L~~~-Gi~~~-~~~~p~~~~~~l~is~~e~~t~edid~l~~~ 441 (481)
T PRK04366 365 LKDI-YDLPYDRPCMHEFVLSGKKLKETGVRTLDIAKRLLDY-GFHPP-TIYFPLIVPEALMIEPTETESKETLDAFIAA 441 (481)
T ss_pred hHhh-CcccCCCCeeEEEEEECccccccCCCHHHHHHHHHHC-CccCC-ccccccccCCeEEEcccCCCCHHHHHHHHHH
Confidence 9886 333221111 1133332 234566777777654 99865 2222112256899996 5689999999999
Q ss_pred HHHhh
Q 045431 428 FKHLY 432 (433)
Q Consensus 428 l~~~l 432 (433)
|+++.
T Consensus 442 l~~i~ 446 (481)
T PRK04366 442 MKQIA 446 (481)
T ss_pred HHHHH
Confidence 98764
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-20 Score=178.45 Aligned_cols=252 Identities=14% Similarity=0.127 Sum_probs=158.4
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-H
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-L 142 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l 142 (433)
++|.++.+.. ++.+..+.+.... .. ....+..| +..-..+|++.+|++. +++.. + ++++++.++.. +
T Consensus 30 ~pi~~~~~~~-~~~~~~~~~~~~~---~~-~~~~y~r~-~~p~~~~Le~~lA~l~----G~~~~-~-~~~sG~~Ai~~~l 97 (398)
T PRK07504 30 EALFLTQGFV-YDTAEAAEARFKG---ED-PGFIYSRY-SNPTVDMFEKRMCALE----GAEDA-R-ATASGMAAVTAAI 97 (398)
T ss_pred CCeECCCCcc-CCCHHHHHHHhcc---Cc-CCceeecC-CCchHHHHHHHHHHHh----CCCee-e-EecCHHHHHHHHH
Confidence 3577777654 2344444332211 11 00123355 3446789999999987 66543 3 45566667665 6
Q ss_pred HHhcCCCCEEEEeCCCChhhhhhHHHh-CCcccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccC
Q 045431 143 QIVFGSNVTMAVQDPSYPAYVDSSVIM-GQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAA 221 (433)
Q Consensus 143 ~~l~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~ 221 (433)
..++++||+|+++.|.|+++...+... ...+ .++..++..+...+...+ .+++++|++++|+||||.+
T Consensus 98 ~~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G---------~~v~~vd~~d~e~l~~ai--~~~tklV~lesp~NptG~v 166 (398)
T PRK07504 98 LCQVKAGDHVVAARALFGSCRYVVETLLPRYG---------IESTLVDGLDLDNWEKAV--RPNTKVFFLESPTNPTLEV 166 (398)
T ss_pred HHHhCCCCEEEEcCCchhHHHHHHHHHHhhcC---------eEEEEECCCCHHHHHHhc--CcCceEEEEECCCCCCcEe
Confidence 778899999999999999876554322 1111 255555421111111111 3689999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccccccee-eeeccccccccCC
Q 045431 222 ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLG-WTVIPKELLFSDG 300 (433)
Q Consensus 222 ~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G-~l~~~~~~~~~~~ 300 (433)
++ +++|.++|+++|+++|+|++|+..... .++ .+ +..+++.|+||.++.+|+++| +++++++.+
T Consensus 167 ~d---l~~I~~la~~~gi~lvvD~a~a~~~~~---~~~-~~----gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i---- 231 (398)
T PRK07504 167 ID---IAAVAKIANQAGAKLVVDNVFATPLFQ---KPL-EL----GAHIVVYSATKHIDGQGRCLGGVVLSDKAWI---- 231 (398)
T ss_pred cC---HHHHHHHHHHcCCEEEEECCccccccC---Cch-hh----CCCEEEeeccccccCCccceEEEEEeCcHHH----
Confidence 98 788888899999999999999854332 111 22 234889999999988899996 666666654
Q ss_pred cchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CC
Q 045431 301 FPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GF 361 (433)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 361 (433)
.+.+...........+++.+..+.+.++ .+..+.++..++...+.+.|+++ ++
T Consensus 232 ---~~~~~~~~~~~g~~~s~~~A~~~l~~L~-----tl~~R~~~~~~na~~la~~L~~~p~v 285 (398)
T PRK07504 232 ---EEHLQDYFRHTGPSLSPFNAWTLLKGLE-----TLPVRVRQQTESAAAIADFLAGHPKV 285 (398)
T ss_pred ---HHHHHHHHHHhCCCCCHHHHHHHHhccc-----hHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 1233333333333445555444444333 35666667778888899999886 44
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.6e-20 Score=178.55 Aligned_cols=346 Identities=10% Similarity=0.088 Sum_probs=211.5
Q ss_pred HHHHHhcCCCCceEEecCCCC--CC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcE
Q 045431 53 KAAHMLKYPDAEVISLGIGDT--TE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDI 129 (433)
Q Consensus 53 ~~~~~~~~~~~~~i~l~~g~~--~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i 129 (433)
++......+++..||+..|.. .+ ..+|.+.+++.+++.+... .. .. -..+....+++.|....+. .+.+
T Consensus 30 ~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~---~~---~~-~~~~~~~~la~~L~~~~~~-~~~v 101 (408)
T PRK04612 30 QGSRVWDDQGREYLDLAAGIAVCGLGHNDPDLVAALTEQAGKLWH---TS---NV-FYSAPPLKLAEELVTASRF-AEKV 101 (408)
T ss_pred eeCEEEECCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhccc---cc---cc-cCCHHHHHHHHHHHhhCCC-CCEE
Confidence 344445567788999977643 22 3688999999998875321 11 11 1123344555555432221 2689
Q ss_pred EEcCChHHHHHH-HH---Hhc---C--C-CCEEEEeCCCChhhhhhHHHhCCccccc-ccccccceEEEeecCccCCccc
Q 045431 130 FVSDGAKCDISR-LQ---IVF---G--S-NVTMAVQDPSYPAYVDSSVIMGQTGEFQ-KDAEKYGKIEYMRCTAENGFFP 198 (433)
Q Consensus 130 ~~~~G~~~al~~-l~---~l~---~--~-gd~Vl~~~p~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 198 (433)
++++++++|... +. ... . + ..+|+..+.+|++.............+. .+......+..++.++...+..
T Consensus 102 ~f~~sGseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 181 (408)
T PRK04612 102 FLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFNDVEALEA 181 (408)
T ss_pred EEcCchHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCCCCHHHHHH
Confidence 999999999885 31 111 1 1 2468888888888654333222111110 0110011222333221111111
Q ss_pred CCCCCCCccEEEEcCCCCccccCCC--HHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccc
Q 045431 199 DLSTVARTDIIFFCSPNNPTGAAAT--REQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFS 276 (433)
Q Consensus 199 ~~~~~~~~~~i~l~~p~nPtG~~~~--~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~s 276 (433)
.+. .+..+.+++.|.+++|.+++ .+.+++|.++|++||+++|+||+|..+...+.+. ... ..+.+..+.|||
T Consensus 182 ~~~--~~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~--a~~--~~~~~pdi~t~~ 255 (408)
T PRK04612 182 AMA--GGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLF--AHW--QEQVTPDIVTLA 255 (408)
T ss_pred hhC--CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchh--hhh--hcCCCCCEEEEc
Confidence 111 23455667789888886665 6789999999999999999999999876654322 111 123456688999
Q ss_pred ccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHH
Q 045431 277 KYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETF 356 (433)
Q Consensus 277 K~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l 356 (433)
|.++ +|+|+||++++++++ +.+.......+.+.+++++.++.+.|+.... +++.++.+++.+++.+.|
T Consensus 256 K~l~-~G~piga~~~~~~~~--------~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~~---~~l~~~~~~~g~~l~~~l 323 (408)
T PRK04612 256 KALG-GGFPIGAMLAGPKVA--------ETMQFGAHGTTFGGNPLAAAVARVALRKLAS---PQIAANVARQSAALRAGL 323 (408)
T ss_pred chhc-CCCceEEEEECHHHH--------hhhcCCCcCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHH
Confidence 9998 999999999987764 3333333444556789999999988863221 345666677777777777
Q ss_pred hhc----CC-eeecCCCccEEEEECCCC---ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe--eccChhHHHHHHH
Q 045431 357 NSL----GF-KVYGGKNAPYVWVQFPGR---SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS--AFGHRGNVLEACK 426 (433)
Q Consensus 357 ~~~----g~-~~~~~~~g~~~~~~~~~~---~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~ 426 (433)
+++ ++ ..+.+ .|.++.+.+... ....+...+ .++||.+.+. +.+.+|+. +..++++++++++
T Consensus 324 ~~l~~~~~~i~~vrg-~Gl~~~i~~~~~~~~~a~~i~~~l-~~~Gvlv~~~------g~~~lRl~Ppl~it~eeid~~l~ 395 (408)
T PRK04612 324 EALNAEFGVFAQVRG-RGLMLGAVLAPAHAGQAGAILDLA-AEHGLLLLQA------GPDVLRFVPALNLTDAELADGLA 395 (408)
T ss_pred HHHHhhCCCeeeeec-cceEEEEEecCchhhHHHHHHHHH-HHCCeEEeeC------CCCEEEEcCCccCCHHHHHHHHH
Confidence 664 22 12232 466666666421 233444444 4569999763 34789998 5669999999999
Q ss_pred HHHHhh
Q 045431 427 RFKHLY 432 (433)
Q Consensus 427 ~l~~~l 432 (433)
+|.+++
T Consensus 396 ~l~~~l 401 (408)
T PRK04612 396 RLRLAL 401 (408)
T ss_pred HHHHHH
Confidence 998876
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-20 Score=180.17 Aligned_cols=352 Identities=11% Similarity=0.027 Sum_probs=209.3
Q ss_pred HHHHHHhcCCCCceEEecCCCC--C-CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCC-CC
Q 045431 52 RKAAHMLKYPDAEVISLGIGDT--T-EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIE-EG 127 (433)
Q Consensus 52 ~~~~~~~~~~~~~~i~l~~g~~--~-~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~-~~ 127 (433)
.++......+++..||+..|.. . -..+|.+.+++.+++.+... ....+.+ .+....+++.+....+-. .+
T Consensus 29 ~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~--~~~~~~~----~~~~~~la~~l~~~~p~~~~~ 102 (425)
T PRK07495 29 AENAEIWDKEGRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLDRFTH--TCHQVVP----YENYVRLAERLNALVPGDFAK 102 (425)
T ss_pred eeecEEEeCCCCEEEEccccHHhhccCCCCHHHHHHHHHHHhhccC--cccCccC----CHHHHHHHHHHHHhCCCCCCC
Confidence 4444455667788999977743 2 23688899999999876421 1111112 233344555544322322 26
Q ss_pred cEEEcCChHHHHHH-HH--HhcCCCCEEEEeCCCChhhhhhHHHh-CCc-ccccccccccceEEEeecCccC-Ccc----
Q 045431 128 DIFVSDGAKCDISR-LQ--IVFGSNVTMAVQDPSYPAYVDSSVIM-GQT-GEFQKDAEKYGKIEYMRCTAEN-GFF---- 197 (433)
Q Consensus 128 ~i~~~~G~~~al~~-l~--~l~~~gd~Vl~~~p~~~~~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~-~~~---- 197 (433)
.+++++++++|... +. .......+|+..+.+|++.......+ +.. .....++.....+..+|..... +..
T Consensus 103 ~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 182 (425)
T PRK07495 103 KTIFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVELHGVSVEQS 182 (425)
T ss_pred EEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCcccccccHHHH
Confidence 89999999999886 31 22344567888888898865333222 211 1111112112234445443211 110
Q ss_pred ----cC-CC---CCCCccEEEEc-CCCCccc-cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCc
Q 045431 198 ----PD-LS---TVARTDIIFFC-SPNNPTG-AAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKE 267 (433)
Q Consensus 198 ----~~-~~---~~~~~~~i~l~-~p~nPtG-~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 267 (433)
.. +. ...++.+|++. ..+| +| ..+|.+.+++|.++|++||+++|+||+|.++...+.+...... +
T Consensus 183 ~~~l~~~~~~~~~~~~iaavi~EPv~g~-~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~a~~~~----g 257 (425)
T PRK07495 183 LAALDKLFKADVDPQRVAAIIIEPVQGE-GGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHH----E 257 (425)
T ss_pred HHHHHHHHHhccCCCceEEEEECCccCC-CCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCceeeccc----C
Confidence 00 11 11346666654 2255 78 4579999999999999999999999999987665543222112 2
Q ss_pred ceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHH
Q 045431 268 VAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKE 347 (433)
Q Consensus 268 ~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 347 (433)
.+..+.||||.++ +|+++|+++++++++ +.+.......+++.++++++++.+.++.... ..+.++.++
T Consensus 258 v~pDi~tlsK~l~-~G~pigav~~~~~i~--------~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~---~~l~~~~~~ 325 (425)
T PRK07495 258 VAADLTTMAKGLA-GGFPLAAVTGRAEIM--------DAPGPGGLGGTYGGNPLGIAAAHAVLDVIEE---EDLCERANQ 325 (425)
T ss_pred CCCCEEeehhhhc-CCccceEEEEcHHHH--------hccCCCCcCCCCCCCHHHHHHHHHHHHHHHh---chHHHHHHH
Confidence 3345789999998 999999999998875 2232223345667889999976666652111 223344444
Q ss_pred HHHHHHHHHhhc----C-CeeecCCCccEEEEECCCCC--------hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe-
Q 045431 348 NTDIIVETFNSL----G-FKVYGGKNAPYVWVQFPGRS--------SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS- 413 (433)
Q Consensus 348 ~~~~l~~~l~~~----g-~~~~~~~~g~~~~~~~~~~~--------~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~- 413 (433)
+.+.+.+.|+++ . +.-+.. .|+++|+.+.... ...+...++ ++|+.+.+.. . ..+.+||.
T Consensus 326 ~g~~l~~~L~~l~~~~~~i~~vrG-~Gl~~~iel~~~~~~~~~~~~~~~~~~~~~-~~Gvl~~~~g---~-~~~~~r~~P 399 (425)
T PRK07495 326 LGNRLKQRLASLRETVPEIADIRG-PGFMNAVEFNDADSGLPSAEFANRVRLKAL-EKGLILLTCG---V-HGNVIRFLA 399 (425)
T ss_pred HHHHHHHHHHHHHhhCCCeeeeec-CceEEEEEEecCCCCCccHHHHHHHHHHHH-HCCeEEeecC---C-CCCEEEEeC
Confidence 444554444432 2 211222 4899999985211 123444444 5699996532 1 13679999
Q ss_pred -eccChhHHHHHHHHHHHhh
Q 045431 414 -AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 414 -~~~~~~~l~~~l~~l~~~l 432 (433)
+..+++++++++++|.+++
T Consensus 400 pl~it~~~id~~~~~l~~~l 419 (425)
T PRK07495 400 PITIQDDVFAEALDILEASI 419 (425)
T ss_pred CCccCHHHHHHHHHHHHHHH
Confidence 5679999999999999876
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=173.32 Aligned_cols=349 Identities=12% Similarity=0.106 Sum_probs=233.7
Q ss_pred HHHHHHHhcCCCCceEEecCCC--CCC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCC
Q 045431 51 RRKAAHMLKYPDAEVISLGIGD--TTE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEG 127 (433)
Q Consensus 51 ~~~~~~~~~~~~~~~i~l~~g~--~~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~ 127 (433)
++.+....+.++...|||..|. ..+ ..+|.+.+++.+++.+.. .....| ..+.+.++++.|.+..+ ..+
T Consensus 30 ~G~G~~v~D~~G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~--h~sn~~-----~~~~~~~la~~L~~~s~-~~d 101 (404)
T COG4992 30 RGEGAYVWDQQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLW--HVSNLF-----YNEPQAELAEKLVELSP-FAD 101 (404)
T ss_pred eccccEEECCCCCEeeeeccceeeeccCCCCHHHHHHHHHHHHHhh--hccccc-----CChHHHHHHHHHHhhCc-ccc
Confidence 3444555566778899986664 333 478999999999888753 112223 23555666666654334 589
Q ss_pred cEEEcCChHHHHHH-H---HHhcC-C-CCEEEEeCCCChhhhhhHHHhCCcc-cccccccccceEEEeecCccCCcccCC
Q 045431 128 DIFVSDGAKCDISR-L---QIVFG-S-NVTMAVQDPSYPAYVDSSVIMGQTG-EFQKDAEKYGKIEYMRCTAENGFFPDL 200 (433)
Q Consensus 128 ~i~~~~G~~~al~~-l---~~l~~-~-gd~Vl~~~p~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (433)
.|+++|++++|++. + ..... + ..+|+....+|++-......++.+. ....+++....+..+|.++-+.+...+
T Consensus 102 ~vff~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfnDi~al~~ai 181 (404)
T COG4992 102 RVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFNDIEALEAAI 181 (404)
T ss_pred EEEEcCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCCCHHHHHHHh
Confidence 99999999999986 3 22222 2 2477777777776433333333222 223334444455666654322221112
Q ss_pred CCCCCccEEEEcCCCCccccCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccc
Q 045431 201 STVARTDIIFFCSPNNPTGAAA-TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYA 279 (433)
Q Consensus 201 ~~~~~~~~i~l~~p~nPtG~~~-~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~ 279 (433)
.+++.+|++---+.-.|+.. +++.++++.++|++||+++|.||++.++...|.......+.-.+| |-++.|.+
T Consensus 182 --~~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~PD----I~tlaK~L 255 (404)
T COG4992 182 --DEDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEPD----ILTLAKAL 255 (404)
T ss_pred --ccCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHHHHhCCCCC----EEEeeccc
Confidence 24777766543388888665 566889999999999999999999999888776544444433345 33689999
Q ss_pred cccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc
Q 045431 280 GFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 280 ~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 359 (433)
| .|+++|.+++.+... +.+....+.++.+.++++.+++.+.++-... +.+.+..+++.+++.+.|+++
T Consensus 256 g-GG~PigA~la~~~~~--------~~~~~G~HgSTfGGNpLacAv~~a~l~~l~~---e~ll~~v~~~g~~~~~~L~~l 323 (404)
T COG4992 256 G-GGFPIGAMLATEEIA--------SAFTPGDHGSTFGGNPLACAVALAVLEVLLE---EGLLENVREKGEYLLQRLREL 323 (404)
T ss_pred c-CCccceeeEEchhhh--------hcCCCCcccCCCCcCHHHHHHHHHHHHHHcc---hhHHHHHHHHHHHHHHHHHHH
Confidence 8 999999999984432 3455566778889999999999988874333 556666777778888888775
Q ss_pred --CCeeecC--CCccEEEEECCCC-ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 360 --GFKVYGG--KNAPYVWVQFPGR-SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 360 --g~~~~~~--~~g~~~~~~~~~~-~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
.+.+... ..|+++-+.+... ...++...+.++ |+.+.+. +++.+|+. +..+++++++++++|++++
T Consensus 324 ~~~~~~v~~vRG~GLmiGiel~~~~~a~~~~~~~~~~-gvL~~~a------~~~ViR~~PpL~i~~eei~~~~~~l~~~l 396 (404)
T COG4992 324 KRRYPLVKEVRGRGLMIGIELKEPYRARDIVRALREE-GVLVLPA------GPNVIRFLPPLVITEEEIDEALDALERAL 396 (404)
T ss_pred hhcCCceeeeecceeEEEEEecCcccHHHHHHHHHHC-CeEEecC------CCCeEEecCCccCCHHHHHHHHHHHHHHH
Confidence 2222222 2467777777643 356777776655 9999864 35689999 5779999999999999876
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-19 Score=176.16 Aligned_cols=349 Identities=11% Similarity=0.072 Sum_probs=210.8
Q ss_pred HHHHHHhcCCCCceEEecCCCC--CC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCc
Q 045431 52 RKAAHMLKYPDAEVISLGIGDT--TE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGD 128 (433)
Q Consensus 52 ~~~~~~~~~~~~~~i~l~~g~~--~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~ 128 (433)
.++......+++..||+..|.- .+ ..++.+.+++.+++.+... ....| ...+.+.++|+.|....+..-+.
T Consensus 30 a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~--~~~~~----~~~~~~~~la~~L~~~~p~~~~~ 103 (443)
T PRK08360 30 AENAKVWDIEGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKLIH--YTPIY----GFPVEPLLLAEKLIEIAPGDNPK 103 (443)
T ss_pred cceeEEEECCCCEEEEccccHhhcccCCCCHHHHHHHHHHHHhccC--ccccc----cCcHHHHHHHHHHHHhCCCCCCE
Confidence 3444455567788999977742 22 3689999999999875321 11112 22344555666654423333368
Q ss_pred EEEcCChHHHHHHHHH---hcCCCCEEEEeCCCChhhhhhHHHh-CCccc-ccccccccceEEEeecCccCC--c-----
Q 045431 129 IFVSDGAKCDISRLQI---VFGSNVTMAVQDPSYPAYVDSSVIM-GQTGE-FQKDAEKYGKIEYMRCTAENG--F----- 196 (433)
Q Consensus 129 i~~~~G~~~al~~l~~---l~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~-~~~~~~~~~~~~~~~~~~~~~--~----- 196 (433)
+++++++++|+..... ......+|+....+|++........ +.... ...++. ...+..++...... +
T Consensus 104 v~f~~sGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 182 (443)
T PRK08360 104 VSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGE-LSDVHYIPYPDCYRCPFGKEPG 182 (443)
T ss_pred EEEcCCHHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCC-CCCcEEEeCCccccccccCchh
Confidence 9999999999986322 2344567888888887764332222 21111 111111 12233333321000 0
Q ss_pred ---------ccC-CCC---CCCccEEEEcCC-CCccccCCC-HHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccc
Q 045431 197 ---------FPD-LST---VARTDIIFFCSP-NNPTGAAAT-REQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFE 261 (433)
Q Consensus 197 ---------~~~-~~~---~~~~~~i~l~~p-~nPtG~~~~-~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~ 261 (433)
..+ ++. ..++.+|++ .| +||+|.+++ .+.+++|.++|++||+++|+||+|.++.+.+.+.....
T Consensus 183 ~~~~~~~~~~~~~l~~~~~~~~iAAvi~-eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~~~ 261 (443)
T PRK08360 183 SCKMECVEYIKEKFEGEVYAEGVAALFA-EPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEH 261 (443)
T ss_pred hhHHHHHHHHHHHHHhccCCCCeEEEEE-CCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchhhhh
Confidence 000 111 145777665 56 799999887 55799999999999999999999998766654332222
Q ss_pred cCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHH
Q 045431 262 IPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEV 341 (433)
Q Consensus 262 ~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~ 341 (433)
+.-.+| ++ ++||.++ +|+|+||++++++++ +.+.......+.+.+++.+.++.+.++.... +.+
T Consensus 262 ~~~~pD-ii---tlsK~l~-~G~pigav~~~~~i~--------~~~~~~~~~~T~~~~p~~~aaa~a~l~~l~~---~~l 325 (443)
T PRK08360 262 FGVEPD-II---TLGKPLG-GGLPISATIGRAEIM--------DSLPPLAHAFTLSGNPVASAAALAVIEEIEE---KNL 325 (443)
T ss_pred cCCCCC-EE---Eeccccc-CCceeEEEEEcHHHH--------hhhcCCCCCCCCCcCHHHHHHHHHHHHHHHH---cCH
Confidence 222233 33 7799998 999999999998874 4443333444566788889888888874222 234
Q ss_pred HHHHHHHHHHHHHHHhhc----CC-eeecCCCccEEEEECCCC---------ChHHHHHHHHHcCCeEecCCCCCCCCCC
Q 045431 342 IGFYKENTDIIVETFNSL----GF-KVYGGKNAPYVWVQFPGR---------SSWDVFSEILEKTHVVTTPGSGFGPGGE 407 (433)
Q Consensus 342 ~~~~~~~~~~l~~~l~~~----g~-~~~~~~~g~~~~~~~~~~---------~~~~~~~~l~~~~gi~v~~g~~f~~~~~ 407 (433)
.++.+++.+++.+.|+++ ++ ..+.+ .|.++-+.+... ....+...++ ++||.+.+. ..
T Consensus 326 ~~~~~~~g~~l~~~L~~l~~~~~~v~~vrg-~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~------~~ 397 (443)
T PRK08360 326 LKRAEKLGNYTKKRLEEMKKKHELIGDVRG-IGLMIGVDLVKDRETKERAYEEAAKVVWRAW-ELGLIVTFF------SG 397 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeeeeec-cceEEEEEEecCCcccCccHHHHHHHHHHHH-HCCeEEeec------CC
Confidence 455555556666655543 22 12222 456666665311 1123445544 569998642 13
Q ss_pred CeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 408 GFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 408 ~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
+.+|++ +..+++++++++++|.+++
T Consensus 398 ~~lr~~P~l~~t~~~id~~~~~l~~~l 424 (443)
T PRK08360 398 NVLRIQPPLTIEKEVLDEGLDILEEAI 424 (443)
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 679996 6779999999999998876
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.9e-20 Score=176.45 Aligned_cols=213 Identities=15% Similarity=0.164 Sum_probs=146.8
Q ss_pred CCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHH----HhCCcccccc
Q 045431 103 AEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSV----IMGQTGEFQK 177 (433)
Q Consensus 103 ~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~----~~g~~~~~~~ 177 (433)
..+...+|++.+|++. +. +..++++++++++.+ +..++++||+|+++.|+|.+....+. ..|
T Consensus 62 ~~p~~~~le~~lA~l~----g~--~~~i~~ssG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~G------- 128 (398)
T PRK08249 62 TNPTVQAFEEKVRILE----GA--EAATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMG------- 128 (398)
T ss_pred CChHHHHHHHHHHHHh----CC--CeEEEeCChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCC-------
Confidence 3456789999999987 53 345555666778886 57889999999999999988654443 334
Q ss_pred cccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCC
Q 045431 178 DAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPR 257 (433)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~ 257 (433)
+++..++..+...+...+ .+++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+......
T Consensus 129 -----i~v~~vd~~d~e~l~~~i--~~~tklV~ie~p~NPtg~v~d---l~~I~~la~~~gi~livD~t~a~~~~~~--- 195 (398)
T PRK08249 129 -----VDVTLCETGDHEQIEAEI--AKGCDLLYLETPTNPTLKIVD---IERLAAAAKKVGALVVVDNTFATPINQN--- 195 (398)
T ss_pred -----eEEEEcCCCCHHHHHHhc--CCCCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCcCccccCC---
Confidence 355555532111111112 257899999999999999998 7778888999999999999998543221
Q ss_pred cccccCCCCcceEEEecccccccccccce-eeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChh
Q 045431 258 SIFEIPGAKEVAIETSSFSKYAGFTGVRL-GWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFK 336 (433)
Q Consensus 258 ~~~~~~~~~~~vi~i~S~sK~~~~~G~r~-G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~ 336 (433)
++ .. + . .+++.|+||.++.+|.++ ||++++++++ +.+...........++..+..+.+.++
T Consensus 196 ~l-~~-~-~--Divv~S~sK~l~g~~~~~gG~vv~~~~l~--------~~l~~~~~~~g~~~s~~~a~l~l~~l~----- 257 (398)
T PRK08249 196 PL-AL-G-A--DLVIHSATKFLSGHADALGGVVCGSKELM--------EQVYHYREINGATMDPMSAYLILRGMK----- 257 (398)
T ss_pred ch-hh-C-C--CEEeccCceecCCCCCceEEEEECCHHHH--------HHHHHHHHhcCCCCCHHHHHHHHhCcc-----
Confidence 12 11 1 2 277899999997567665 6777776664 555555554445566666655554443
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 045431 337 AVHEVIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 337 ~~~~~~~~~~~~~~~l~~~l~~~ 359 (433)
.+..+.++..+++..+.+.|+++
T Consensus 258 tL~~R~~~~~~na~~la~~L~~~ 280 (398)
T PRK08249 258 TLKLRVRQQQESAMALAKYLQTH 280 (398)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcC
Confidence 34556677788888899999886
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-19 Score=173.55 Aligned_cols=221 Identities=14% Similarity=0.194 Sum_probs=151.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHh-CCcccc
Q 045431 98 YSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIM-GQTGEF 175 (433)
Q Consensus 98 ~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~ 175 (433)
+.+|+ ......|++++|++. + .+++++++|+++++.+ +..++++||+|+++.|+|++....+... ...+
T Consensus 47 Y~R~~-npt~~~Le~~lA~le----g--~e~ivvt~gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~g-- 117 (388)
T PRK08861 47 YTRSG-NPNRGLLEQTLSELE----S--GKGAVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGD-- 117 (388)
T ss_pred ccCCC-CchHHHHHHHHHHHh----C--CCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCC--
Confidence 45553 456889999999986 4 5899999999999997 5778999999999999998755444322 2112
Q ss_pred cccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC
Q 045431 176 QKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN 255 (433)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~ 255 (433)
.++..++..+...+...+ .+++++|++++|+||||.+++ +++|.++|+++|+++|+|++|....+. .
T Consensus 118 -------i~v~~vd~~d~e~l~~~i--~~~tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~vIvDea~~~~~~~-~ 184 (388)
T PRK08861 118 -------FKVQFVDQSDAAALDAAL--AKKPKLILLETPSNPLVRVVD---IAELCQKAKAVGALVAVDNTFLTPVLQ-K 184 (388)
T ss_pred -------eEEEEECCCCHHHHHHhc--CcCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCccccccC-C
Confidence 255555432111111111 258899999999999999999 678888899999999999999853322 1
Q ss_pred CCcccccCCCCcceEEEeccccccccc-ccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCC
Q 045431 256 PRSIFEIPGAKEVAIETSSFSKYAGFT-GVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEG 334 (433)
Q Consensus 256 ~~~~~~~~~~~~~vi~i~S~sK~~~~~-G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~ 334 (433)
|. .+ + -.+++.|++|.++-+ ++..|+++++++.+ .+++...........++.....+.. +
T Consensus 185 pl---~~-G---aDivv~S~tK~l~G~~d~~gG~i~~~~~~~-------~~~~~~~~~~~G~~~~p~~a~l~~r-----g 245 (388)
T PRK08861 185 PL---EL-G---ADFVIHSTTKYINGHSDVIGGVLITKTKEH-------AEELAWWGNCIGATGTPFDSYMTLR-----G 245 (388)
T ss_pred Cc---cc-C---CCEEEeecceeccCCCcceeEEEEecHHHH-------HHHHHHHHhccCCCCChHHHHHHHh-----c
Confidence 22 12 1 238899999998632 46789988755432 3445444444344455555443333 3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhc
Q 045431 335 FKAVHEVIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 335 ~~~~~~~~~~~~~~~~~l~~~l~~~ 359 (433)
.+.+.-+.++..++...+.+.|+++
T Consensus 246 l~Tl~lR~~~~~~~a~~~a~~L~~~ 270 (388)
T PRK08861 246 IRTLGARMRVHEESAQQILAYLQTQ 270 (388)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 3445666777788888999999887
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-20 Score=179.16 Aligned_cols=323 Identities=16% Similarity=0.179 Sum_probs=212.5
Q ss_pred CChHHHHHHHHHHHhhcccCCCCCCCCC----CCCCHHHHHHHHHHHhccCCCCC-CcEEEcCChHHHHHH-HHHh---c
Q 045431 76 PIPEVITSALAKRSYALSTQEGYSGYGA----EQGEKPLRAAIASTFYKDLGIEE-GDIFVSDGAKCDISR-LQIV---F 146 (433)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~Y~~----~~g~~~lr~~la~~l~~~~~~~~-~~i~~~~G~~~al~~-l~~l---~ 146 (433)
+.|+.+++++.+.+...........+.. ..-..+.|+.+++++ ++++ ++|++++|++.+++. +..+ +
T Consensus 10 ~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~l----g~~~~~~v~~~~~~t~a~~~~~~~l~~~~ 85 (371)
T PF00266_consen 10 PMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLL----GAPPDEEVVFTSNGTEALNAVASSLLNPL 85 (371)
T ss_dssp B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHH----TSSTTEEEEEESSHHHHHHHHHHHHHHHG
T ss_pred CCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhc----CCccccccccccccchhhhhhhhcccccc
Confidence 6889999999998875532121111211 123346777788877 8888 899999999999997 5666 7
Q ss_pred CCCCEEEEeCCCChhhhhhHHHhC-CcccccccccccceEEEeecCccCCcccC-CCC--CCCccEEEEcCCCCccccCC
Q 045431 147 GSNVTMAVQDPSYPAYVDSSVIMG-QTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIFFCSPNNPTGAAA 222 (433)
Q Consensus 147 ~~gd~Vl~~~p~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~~p~nPtG~~~ 222 (433)
++||+|++.+-.|++....+.... ..+ .++..++.+.++....+ ++. .++++++++++.+|.||+.+
T Consensus 86 ~~g~~vl~~~~~~~s~~~~~~~~~~~~g---------~~v~~i~~~~~~~~~~~~~~~~l~~~~~lv~~~~~~~~tG~~~ 156 (371)
T PF00266_consen 86 KPGDEVLVTSNEHPSNRYPWEEIAKRKG---------AEVRVIPADPGGSLDLEDLEEALNPDTRLVSISHVENSTGVRN 156 (371)
T ss_dssp TTTCEEEEEESSHHHHHHHHHHHHHHTT---------EEEEEEEEGTTSSCSHHHHHHHHHTTESEEEEESBETTTTBBS
T ss_pred ccccccccccccccccccccccccccch---------hhhccccccccchhhhhhhhhhhccccceEEeecccccccEEe
Confidence 999999999999998774444332 112 47777877654433322 211 37899999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCC--
Q 045431 223 TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDG-- 300 (433)
Q Consensus 223 ~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~-- 300 (433)
+ +++|.++|+++|+++++|.+++.... +..+..+ +..++++|..|.+|.+| +|+++++++.+.+..
T Consensus 157 p---i~~I~~~~~~~~~~~~vD~~~~~g~~---~id~~~~----~~D~~~~s~~Kl~gp~G--~g~l~v~~~~~~~~~p~ 224 (371)
T PF00266_consen 157 P---IEEIAKLAHEYGALLVVDAAQSAGCV---PIDLDEL----GADFLVFSSHKLGGPPG--LGFLYVRPEAIERLRPA 224 (371)
T ss_dssp S---HHHHHHHHHHTTSEEEEE-TTTTTTS---S--TTTT----TESEEEEESTSTTSSST--EEEEEEEHHHHHHHHTS
T ss_pred e---eceehhhhhccCCceeEechhccccc---ccccccc----ccceeeecccccCCCCc--hhhheehhhhhhccccc
Confidence 9 88899999999999999999984222 3333322 23488999999554444 899999997752210
Q ss_pred ---cchhHH--HHHHH------hhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecC--
Q 045431 301 ---FPVAKD--FNRIV------CTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGG-- 366 (433)
Q Consensus 301 ---~~~~~~--~~~~~------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~-- 366 (433)
...... ..... .....+++.+...++..+++......+++.+++..+..+++.+.|+++ ++.+..+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~ 304 (371)
T PF00266_consen 225 KPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEELPGIEVLGPDD 304 (371)
T ss_dssp SSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSC
T ss_pred cccccccccccchhcccccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhcCCceeEeeecc
Confidence 000000 01000 001113444444444445543322457888889999999999999998 5566442
Q ss_pred --CCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCC------CCCCeEEEee--ccChhHHHHH
Q 045431 367 --KNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGP------GGEGFIRVSA--FGHRGNVLEA 424 (433)
Q Consensus 367 --~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~------~~~~~iRi~~--~~~~~~l~~~ 424 (433)
..+..+.+.+++.+..++...|.++ ||.+..|..+.. ...+.||+|+ +++++|++++
T Consensus 305 ~~~~~~i~~~~~~~~~~~~~~~~L~~~-~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 305 EPRRPSIVSFNLPGSDADDVVKYLEER-GIAVSTGSACAGPSLDILGMGGVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp GGBGTTEEEEEETTSSHHHHHHHHHHH-TEEEEESTTTCHHHHHHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred cccccceEEEeecCCCHHHHHHHHhhc-CEEEeccCcccHHHHHHhCCCCEEEEeccCCCCHHHHhhC
Confidence 3355677777877777777777666 999999876540 1137999995 6799999874
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.7e-20 Score=175.96 Aligned_cols=221 Identities=14% Similarity=0.173 Sum_probs=151.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhh----hhhHHHhCCc
Q 045431 98 YSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAY----VDSSVIMGQT 172 (433)
Q Consensus 98 ~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~----~~~~~~~g~~ 172 (433)
+..|+. ....+|++.+|++. +. ++.+++++++.++.. +..++++||+|+++...|.+. ...+...|
T Consensus 64 Y~r~~~-p~~~~le~~lA~l~----g~--~~al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G-- 134 (403)
T PRK07810 64 YSRYGN-PTVSMFEERLRLIE----GA--EACFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWG-- 134 (403)
T ss_pred eeCCCC-chHHHHHHHHHHHh----CC--CcEEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcC--
Confidence 455644 45789999999986 53 356666666677665 677899999999988666443 33444556
Q ss_pred ccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEecccccccc
Q 045431 173 GEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYIS 252 (433)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~ 252 (433)
.+++.++.++...+...+ .+++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|+....
T Consensus 135 ----------~~v~~vd~~d~~~l~~ai--~~~tklV~~esp~Nptg~v~d---l~~I~~la~~~g~~vivD~a~a~~~~ 199 (403)
T PRK07810 135 ----------VETVFVDGEDLSQWEEAL--SVPTQAVFFETPSNPMQSLVD---IAAVSELAHAAGAKVVLDNVFATPLL 199 (403)
T ss_pred ----------cEEEEECCCCHHHHHHhc--CcCceEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCCcccc
Confidence 367777653211111111 357899999999999999887 88889999999999999999985333
Q ss_pred CCCCCcccccCCCCcceEEEecccccccccccce-eeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcC
Q 045431 253 DDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRL-GWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLS 331 (433)
Q Consensus 253 ~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~-G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~ 331 (433)
.. + + .. +..+++.|++|.++..|.++ |+++++++.+ .+.+...........++..+..+.+.|+
T Consensus 200 ~~-~--~-~~----gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~-------~~~l~~~~~~~g~~~s~~~a~l~l~~L~ 264 (403)
T PRK07810 200 QR-G--L-PL----GADVVVYSGTKHIDGQGRVLGGAILGDREYI-------DGPVQKLMRHTGPALSAFNAWVLLKGLE 264 (403)
T ss_pred CC-h--h-hc----CCcEEEccCCceecCCcCceeEEEEeChHHH-------HHHHHHHHHHhCCCCCHHHHHHHHhccC
Confidence 21 2 1 11 22488999999998678887 7888887764 2234433333334567777766665554
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHhhc-CCe
Q 045431 332 PEGFKAVHEVIGFYKENTDIIVETFNSL-GFK 362 (433)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~ 362 (433)
.+..+.++..++...+.+.|+++ ++.
T Consensus 265 -----tl~~R~~~~~~~a~~~a~~L~~~p~v~ 291 (403)
T PRK07810 265 -----TLALRVRHSNASALRIAEFLEGHPAVR 291 (403)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 34666677778888888889886 443
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.7e-20 Score=180.23 Aligned_cols=347 Identities=11% Similarity=0.062 Sum_probs=207.2
Q ss_pred HHHHhcCCCCceEEecCCCCCC---CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEE
Q 045431 54 AAHMLKYPDAEVISLGIGDTTE---PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIF 130 (433)
Q Consensus 54 ~~~~~~~~~~~~i~l~~g~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~ 130 (433)
+......++...+|+..|.+.. ..++.+.+++.+++.+. ...|.+..+..+|.+.+++.+ . ..+.++
T Consensus 41 G~~l~d~dG~~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~~-----~~~~~~~~~~~~la~~L~~~~----~-~~~~v~ 110 (426)
T PRK00062 41 GAYLYDVDGNEYIDYVGSWGPMILGHAHPEVVEAVIEAAEKG-----LSFGAPTELEVELAELVIELV----P-SIEMVR 110 (426)
T ss_pred CCEEEeCCCCEEEEcccchhhhhcCCCCHHHHHHHHHHHHhC-----CcCCCCCHHHHHHHHHHHHhC----C-CCCEEE
Confidence 3334445677899998886432 47899999999999752 123334556666777776653 2 357899
Q ss_pred EcCChHHHHHH-HHHh--cCCCCEEEEeCCCChhhhhhHHHh-CCccc-cc-ccccc-----cceEEEeecCccCCcccC
Q 045431 131 VSDGAKCDISR-LQIV--FGSNVTMAVQDPSYPAYVDSSVIM-GQTGE-FQ-KDAEK-----YGKIEYMRCTAENGFFPD 199 (433)
Q Consensus 131 ~~~G~~~al~~-l~~l--~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~-~~-~~~~~-----~~~~~~~~~~~~~~~~~~ 199 (433)
+++++++|+.. +... ...+++|+..+++|++........ +.... +. ..... ......++.++...+...
T Consensus 111 ~~~sGseA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 190 (426)
T PRK00062 111 MVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPYNDLEAVEEL 190 (426)
T ss_pred EecCHHHHHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcCCCCHHHHHHH
Confidence 99999999986 4322 234688999999999976433322 11000 00 00000 001122222111111111
Q ss_pred CCC-CCCccEEEEcCCCCccccCCC-HHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccc
Q 045431 200 LST-VARTDIIFFCSPNNPTGAAAT-REQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSK 277 (433)
Q Consensus 200 ~~~-~~~~~~i~l~~p~nPtG~~~~-~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK 277 (433)
++. ..++.+|++..-..-+|.+.+ .+.+++|.++|++||+++|+||+|..+.. +.......+...+| +.+|||
T Consensus 191 i~~~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~-g~~~~~~~~~~~pD----i~~~gK 265 (426)
T PRK00062 191 FEEYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRV-ALGGAQGYYGVTPD----LTTLGK 265 (426)
T ss_pred HHhCCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhcccc-CCccHHHHhCCCcc----hHhhhh
Confidence 111 135556555422344787775 88899999999999999999999997733 32211111221233 358999
Q ss_pred cccccccceeeeeccccccccCCcchhHHHH---HHHhhccCCCcHHHHHHHHHhcCcCCh-hHHHHHHHHHHHHHHHHH
Q 045431 278 YAGFTGVRLGWTVIPKELLFSDGFPVAKDFN---RIVCTCFNGASNISQAGGLACLSPEGF-KAVHEVIGFYKENTDIIV 353 (433)
Q Consensus 278 ~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~ 353 (433)
.++ +|+++|+++++++++ +.+. .....++.+.+++.++++.+.|+.... +..++.++.....++.+.
T Consensus 266 ~l~-~G~p~ga~~~~~~i~--------~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~ 336 (426)
T PRK00062 266 IIG-GGLPVGAFGGRREIM--------EQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKEPGFYEELEALTKRLAEGLK 336 (426)
T ss_pred Hhh-CCCcceeeeEHHHHH--------HhhccCCCceecccCcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 998 899999999988775 3332 122334456788999888888763222 233444444444444444
Q ss_pred HHHhhcCCee-ecCCCccEEEEECCCC-----------C---hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccCh
Q 045431 354 ETFNSLGFKV-YGGKNAPYVWVQFPGR-----------S---SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHR 418 (433)
Q Consensus 354 ~~l~~~g~~~-~~~~~g~~~~~~~~~~-----------~---~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~ 418 (433)
+.++++++.. ..+ .|.++-+.+... + ...+...++ ++||.+.|.. .+.+++++..++
T Consensus 337 ~~~~~~~~~~~vrg-~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~-~~Gv~v~~~~------~~~~~~~~~~t~ 408 (426)
T PRK00062 337 EAAKKAGIPLTVNR-VGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAML-DEGVYLAPSQ------FEAGFVSAAHTD 408 (426)
T ss_pred HHHHHcCCceEEEE-ecceEEEEEecCCCcchhhhccccHHHHHHHHHHHH-HCCeEeecCC------cCceeeeccCCH
Confidence 4444555543 223 444444444210 1 134555555 4599997742 134778887899
Q ss_pred hHHHHHHHHHHHhh
Q 045431 419 GNVLEACKRFKHLY 432 (433)
Q Consensus 419 ~~l~~~l~~l~~~l 432 (433)
+++++++++|++++
T Consensus 409 ~ei~~~~~~l~~~l 422 (426)
T PRK00062 409 EDIEKTLEAARKAF 422 (426)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998876
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-19 Score=171.27 Aligned_cols=246 Identities=16% Similarity=0.168 Sum_probs=159.2
Q ss_pred EEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCC--CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-H
Q 045431 66 ISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA--EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-L 142 (433)
Q Consensus 66 i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l 142 (433)
|..+.. ++++.++.+.++..... .....|+. ..+...|+++||++. + .+++++++|+++|+.+ +
T Consensus 27 i~~sst-~~~~~~~~~~~~~~~~~------~~~~~Y~r~~npt~~~Le~~iA~le----~--~~~~~~~~sG~~Ai~~~l 93 (394)
T PRK09028 27 VFRAST-VVFDTVAEMRHAAKNRA------NGEMFYGRRGTPTHFAFQAAIVELE----G--GAGTALYPSGAAAISNAL 93 (394)
T ss_pred eeCCCC-cccCCHHHHHHHhccCc------cCCceecCCCCchHHHHHHHHHHHh----C--CCcEEEECCHHHHHHHHH
Confidence 444433 23455666555443321 11234654 334579999999885 3 2478999999999996 6
Q ss_pred HHhcCCCCEEEEeCCCChhhhhhHHH-hCCcccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccC
Q 045431 143 QIVFGSNVTMAVQDPSYPAYVDSSVI-MGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAA 221 (433)
Q Consensus 143 ~~l~~~gd~Vl~~~p~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~ 221 (433)
.+++++||+|++.+|.|++....+.. +...+ .++..++..+...+...+ .+++++|++++|+||||.+
T Consensus 94 ~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~G---------i~v~~v~~~~~e~l~~~l--~~~TklV~lespsNPtg~v 162 (394)
T PRK09028 94 LSFLKAGDHLLMVDSCYEPTRDLCDKILKGFG---------IETTYYDPMIGEGIRELI--RPNTKVLFLESPGSITMEV 162 (394)
T ss_pred HHHhCCCCEEEEECCCcHHHHHHHHHhhhhcc---------eEEEEECCCCHHHHHHhc--CcCceEEEEECCCCCCCcH
Confidence 78899999999999999887654421 11111 255555433221221112 3689999999999999875
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccc-ccccceeeeeccccccccCC
Q 045431 222 ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAG-FTGVRLGWTVIPKELLFSDG 300 (433)
Q Consensus 222 ~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~-~~G~r~G~l~~~~~~~~~~~ 300 (433)
.++++|+++|+++|+++|+|++|+.... ..++ .+ +-.+++.|.+|+++ -++.-.|+++.++++.
T Consensus 163 ---~dl~~I~~la~~~g~~lvvD~t~a~p~~---~~Pl-~~----GaDivv~S~tK~l~Gh~d~~~G~~~~~~~~~---- 227 (394)
T PRK09028 163 ---QDVPTLSRIAHEHDIVVMLDNTWASPIN---SRPF-EM----GVDISIQAATKYIVGHSDVMLGTATANEKHW---- 227 (394)
T ss_pred ---HHHHHHHHHHHHcCCEEEEECCcccccc---CCcc-cc----CceEEEEeCCeEecCCCCEEEEEEECCHHHH----
Confidence 5589999999999999999999984211 1112 12 23499999999995 3345678777665542
Q ss_pred cchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc
Q 045431 301 FPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 359 (433)
+.+...........++.....+. .+.+.+.-+.++..++...+.+.|+++
T Consensus 228 ----~~l~~~~~~~G~~~~p~~a~l~~-----rgl~TL~lR~~~~~~na~~la~~L~~~ 277 (394)
T PRK09028 228 ----DQLREHSYLMGQCTSPDDVYLAM-----RGLRTLGVRLAQHEKNALKVANWLATR 277 (394)
T ss_pred ----HHHHHHHHhcCCCCCHHHHHHHH-----cccCcHHHHHHHHHHHHHHHHHHHhcC
Confidence 44443333333334454433222 344556777888889999999999987
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-19 Score=173.80 Aligned_cols=216 Identities=16% Similarity=0.208 Sum_probs=148.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhh----hHHHhCCcc
Q 045431 99 SGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVD----SSVIMGQTG 173 (433)
Q Consensus 99 ~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~----~~~~~g~~~ 173 (433)
..|+ ..-..+|++.++++. +. +++++++++++++.+ +..++++||+|+++.+.|.+... .+...|
T Consensus 49 ~r~~-~p~~~~le~~la~l~----g~--~~~~~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g--- 118 (380)
T TIGR01325 49 SRYA-NPTVAAFEERIAALE----GA--ERAVATATGMSAIQAALMTLLQAGDHVVASRSLFGSTVGFISEILPRFG--- 118 (380)
T ss_pred ecCC-CchHHHHHHHHHHHh----CC--CcEEEECCHHHHHHHHHHHHhCCCCEEEEecCCcchHHHHHHHHHHHhC---
Confidence 4553 445789999999986 54 467888889999886 67788999999999998876433 334455
Q ss_pred cccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccC
Q 045431 174 EFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISD 253 (433)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~ 253 (433)
.++..++.++...+...+ .+++++|++++|+||+|.+.+ +++|.++|+++|+++|+|++|+.....
T Consensus 119 ---------~~v~~v~~~d~~~l~~~i--~~~tklV~le~p~np~g~~~d---l~~I~~la~~~gi~livD~a~~~~~~~ 184 (380)
T TIGR01325 119 ---------IEVSFVDPTDLNAWEAAV--KPNTKLVFVETPSNPLGELVD---IAALAELAHAIGALLVVDNVFATPVLQ 184 (380)
T ss_pred ---------CEEEEECCCCHHHHHHhc--CCCceEEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcccccC
Confidence 366677654221221111 257899999999999999987 788889999999999999999854322
Q ss_pred CCCCcccccCCCCcceEEEecccccccccccce-eeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCc
Q 045431 254 DNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRL-GWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSP 332 (433)
Q Consensus 254 ~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~-G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~ 332 (433)
. + + .. +..+++.|+||.++.+|.++ |+++++++++ +.+...........++..... ++.
T Consensus 185 ~-p--l-~~----g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~--------~~l~~~~~~~g~~~~p~~a~~---~l~- 244 (380)
T TIGR01325 185 Q-P--L-KL----GADVVVYSATKHIDGQGRVMGGVIAGSEELM--------AEVAVYLRHTGPAMSPFNAWV---LLK- 244 (380)
T ss_pred C-c--h-hh----CCCEEEeeccceecCCCCeEEEEEEeCHHHH--------HHHHHHHHhhCCCCCHHHHHH---HHh-
Confidence 1 2 2 12 12388889999998677776 7788777764 445544433333334444332 332
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHhhc
Q 045431 333 EGFKAVHEVIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~l~~~l~~~ 359 (433)
+.+.+..+.++..+++..+.+.|+++
T Consensus 245 -~l~tl~~r~~~~~~~a~~la~~L~~~ 270 (380)
T TIGR01325 245 -GLETLSLRMQKQFDSALAIAEWLQAQ 270 (380)
T ss_pred -ccCcHHHHHHHHHHHHHHHHHHHHcC
Confidence 22344566777888888899999887
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-19 Score=174.37 Aligned_cols=329 Identities=14% Similarity=0.147 Sum_probs=199.4
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCC---CCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYG---AEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDI 139 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~---~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al 139 (433)
+..+.|+.+... +.|+.+.+++.+.+...........+. ......+.++++ ++ +++++++|++|+|+++++
T Consensus 26 ~~~iyld~~a~g-~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l----~g~~~~~v~~~~~~t~~l 99 (406)
T TIGR01814 26 NAVIYLDGNSLG-LMPKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESLLKL-RL----VGAKEDEVVVMNTLTINL 99 (406)
T ss_pred CCcEEecCCCcC-cCcHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhhccc-cc----cCCCCCcEEEeCCchHHH
Confidence 457889877755 568889999988776543211111111 111122222333 33 488999999999999999
Q ss_pred HH-HHHhcCCC---CEEEEeCCCChhhhhhHH----HhCCcccccccccccceE----EEeecCccCCccc-CCCC----
Q 045431 140 SR-LQIVFGSN---VTMAVQDPSYPAYVDSSV----IMGQTGEFQKDAEKYGKI----EYMRCTAENGFFP-DLST---- 202 (433)
Q Consensus 140 ~~-l~~l~~~g---d~Vl~~~p~~~~~~~~~~----~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~---- 202 (433)
++ +.++++++ +.|++.+.+|++....+. ..|. ++ +.++.+.++.... +++.
T Consensus 100 ~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~------------~~~~~~~~~~~~~~g~~~~~~l~~~~~~ 167 (406)
T TIGR01814 100 HLLLASFYKPTPKRYKILLEAKAFPSDHYAIESQLQLHGL------------TVEESMVQIEPREEETLRLEDILDTIEK 167 (406)
T ss_pred HHHHHHhcCCcCCccEEEecCCCCChHHHHHHHHHHhcCC------------CcccceEEeccCCCCccCHHHHHHHHHh
Confidence 97 56667664 368888899988554433 3342 33 3444433222221 1211
Q ss_pred -CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccc-
Q 045431 203 -VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAG- 280 (433)
Q Consensus 203 -~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~- 280 (433)
.+++++|++++++|.||..++ +++|.++|+++|+++++|++++.... +..+... +..+++.|.+|+++
T Consensus 168 ~~~~t~lv~~~~v~~~tG~~~~---~~~i~~~~~~~g~~~~vD~aq~~G~~---~id~~~~----gvD~~~~s~hK~l~g 237 (406)
T TIGR01814 168 NGDDIAVILLSGVQYYTGQLFD---MAAITRAAHAKGALVGFDLAHAVGNV---PLDLHDW----GVDFACWCTYKYLNA 237 (406)
T ss_pred cCCCeEEEEEeccccccceecC---HHHHHHHHHHcCCEEEEEcccccCCc---ccccccC----CCCEEEEcCccccCC
Confidence 267899999999999999998 88899999999999999999984211 3333222 33489999999873
Q ss_pred ccccceeeeeccccccccCCcchhHH--------HH------HH-HhhccCCCcHHHHHH---HHHhcCcCChhHHHHHH
Q 045431 281 FTGVRLGWTVIPKELLFSDGFPVAKD--------FN------RI-VCTCFNGASNISQAG---GLACLSPEGFKAVHEVI 342 (433)
Q Consensus 281 ~~G~r~G~l~~~~~~~~~~~~~~~~~--------~~------~~-~~~~~~~~~~~~q~~---~~~~l~~~~~~~~~~~~ 342 (433)
.|| |.+++.++.+....+..... +. .. ......+++.+...+ ++.++...+ +++.+
T Consensus 238 ~pG---~~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g---~~~i~ 311 (406)
T TIGR01814 238 GPG---AGAFVHEKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAG---MEALR 311 (406)
T ss_pred CCC---eEEEEehhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcC---HHHHH
Confidence 234 43443322221100100000 00 00 000011233333333 334443333 47777
Q ss_pred HHHHHHHHHHHHHHhhc-----CCeeecCC----CccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe
Q 045431 343 GFYKENTDIIVETFNSL-----GFKVYGGK----NAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS 413 (433)
Q Consensus 343 ~~~~~~~~~l~~~l~~~-----g~~~~~~~----~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~ 413 (433)
++.+...+++.+.|++. |+.+..+. .+..+.+.++ ....++...|.+ +||.+.. ...+.||+|
T Consensus 312 ~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~-~~~~~~~~~L~~-~gi~v~~------~~~~~iRiS 383 (406)
T TIGR01814 312 KKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHP-VPGKAVFQALIK-RGVIGDK------REPSVIRVA 383 (406)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEec-CCHHHHHHHHHH-CCEEEec------cCCCeEEEe
Confidence 88888888888888764 36666542 2345666776 456667777654 5998753 124689999
Q ss_pred e---ccChhHHHHHHHHHHHhhC
Q 045431 414 A---FGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 414 ~---~~~~~~l~~~l~~l~~~l~ 433 (433)
+ +++++|++.++++|++++.
T Consensus 384 ~~~~~nt~~did~l~~~l~~~~~ 406 (406)
T TIGR01814 384 PVPLYNTFVDVYDAVNVLEEILD 406 (406)
T ss_pred chhccCCHHHHHHHHHHHHHHhC
Confidence 5 5689999999999998763
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-19 Score=171.48 Aligned_cols=219 Identities=16% Similarity=0.159 Sum_probs=144.5
Q ss_pred CCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHH-hCCccccccccc
Q 045431 103 AEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVI-MGQTGEFQKDAE 180 (433)
Q Consensus 103 ~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~-~g~~~~~~~~~~ 180 (433)
+.....+|++++|++. +.+ ..+++++ +++++.+ +..++++||+|+++.|+|++....+.. +...+
T Consensus 59 ~~p~~~~Le~~lA~~~----g~~-~~i~~~s-G~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~g------- 125 (388)
T PRK07811 59 GNPTRTALEEQLAALE----GGA-YGRAFSS-GMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWG------- 125 (388)
T ss_pred CCccHHHHHHHHHHHh----CCC-ceEEeCC-HHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCC-------
Confidence 4567899999999997 544 3455555 5788886 678899999999999999865544332 22222
Q ss_pred ccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCccc
Q 045431 181 KYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIF 260 (433)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~ 260 (433)
.++..++..+...+...+ .+++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|+..... .++.
T Consensus 126 --i~~~~~d~~d~e~l~~~i--~~~tklV~ie~p~NPtg~~~d---l~~I~~la~~~gi~lIvD~a~a~~~~~---~p~~ 195 (388)
T PRK07811 126 --VEYTPVDLSDLDAVRAAI--TPRTKLIWVETPTNPLLSITD---IAALAELAHDAGAKVVVDNTFASPYLQ---QPLA 195 (388)
T ss_pred --eEEEEeCCCCHHHHHHhc--CcCCeEEEEECCCCCcceecC---HHHHHHHHHHcCCEEEEECCCCccccC---Cchh
Confidence 255555542211111111 257899999999999998765 888999999999999999999854321 1221
Q ss_pred ccCCCCcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHH
Q 045431 261 EIPGAKEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVH 339 (433)
Q Consensus 261 ~~~~~~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~ 339 (433)
. +..+++.|++|.++.+| .+.||++++++.+ .+.+...........++.....+...++ .+.
T Consensus 196 -~----gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l-------~~~~~~~~~~~g~~~s~~~a~l~~~~L~-----tl~ 258 (388)
T PRK07811 196 -L----GADVVVHSTTKYIGGHSDVVGGALVTNDEEL-------DEAFAFLQNGAGAVPGPFDAYLTLRGLK-----TLA 258 (388)
T ss_pred -h----CCcEEEecCceeecCCCCcEEEEEEECCHHH-------HHHHHHHHHhcCCCCCHHHHHHHHhccC-----cHH
Confidence 1 12388999999997544 4679998865443 2444433333333344444433333333 345
Q ss_pred HHHHHHHHHHHHHHHHHhhc-CC
Q 045431 340 EVIGFYKENTDIIVETFNSL-GF 361 (433)
Q Consensus 340 ~~~~~~~~~~~~l~~~l~~~-g~ 361 (433)
.+.++..++...+.+.|+++ ++
T Consensus 259 ~R~~~~~~na~~la~~L~~~p~v 281 (388)
T PRK07811 259 VRMDRHSENAEAVAEFLAGHPEV 281 (388)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCe
Confidence 66667788888999999887 44
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-19 Score=173.41 Aligned_cols=216 Identities=17% Similarity=0.153 Sum_probs=144.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhH----HHhCCcc
Q 045431 99 SGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSS----VIMGQTG 173 (433)
Q Consensus 99 ~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~ 173 (433)
..| +.....+|++.++++. +.+ + .++++++++++.+ +..++++||+|+++.|+|....... ...|
T Consensus 60 ~r~-~~p~~~~le~~lA~l~----g~~-~-~i~~~sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G--- 129 (403)
T PRK07503 60 SRI-SNPTLALLEQRMASLE----GGE-A-AVALASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFG--- 129 (403)
T ss_pred eCC-CCchHHHHHHHHHHHh----CCC-c-EEEEcCHHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhhCC---
Confidence 344 3446789999999986 553 3 4555566678876 5678899999999999997644333 3344
Q ss_pred cccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccC
Q 045431 174 EFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISD 253 (433)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~ 253 (433)
.++..++.++...+...+ .+++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|+.....
T Consensus 130 ---------~~v~~vd~~d~~~l~~~i--~~~tklV~le~p~NPtG~~~d---i~~I~~la~~~gi~lIvD~a~a~~~~~ 195 (403)
T PRK07503 130 ---------VTVRHVDLTDPAALKAAI--SDKTRMVYFETPANPNMRLVD---IAAVAEIAHGAGAKVVVDNTYCTPYLQ 195 (403)
T ss_pred ---------EEEEEeCCCCHHHHHHhc--CccCcEEEEeCCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcccccC
Confidence 366666654211111111 357899999999999999887 788899999999999999999853221
Q ss_pred CCCCcccccCCCCcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHHH--HhhccCCCcHHHHHHHHHhc
Q 045431 254 DNPRSIFEIPGAKEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNRI--VCTCFNGASNISQAGGLACL 330 (433)
Q Consensus 254 ~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~q~~~~~~l 330 (433)
.++ .. +..+++.|+||.++.+| .+.|+++.+++++ +++... ........+++.+..+.+.+
T Consensus 196 ---~~l-~~----g~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~--------~~l~~~~~~~~~g~~~s~~~a~l~l~~L 259 (403)
T PRK07503 196 ---RPL-EL----GADLVVHSATKYLGGHGDITAGLVVGGKALA--------DRIRLEGLKDMTGAVMSPFDAFLLMRGL 259 (403)
T ss_pred ---Cch-hh----CCCEEEccccccccCCCceeEEEEEcCHHHH--------HHHHhhhHHhCcCCCCCHHHHHHHHcCc
Confidence 122 12 12388999999998655 7789998777664 444321 22223345555554444333
Q ss_pred CcCChhHHHHHHHHHHHHHHHHHHHHhhc
Q 045431 331 SPEGFKAVHEVIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 359 (433)
+.+..+.++..++...+.+.|+++
T Consensus 260 -----~tl~~r~~~~~~na~~~a~~L~~~ 283 (403)
T PRK07503 260 -----KTLALRMDRHCASAQAVAEWLARH 283 (403)
T ss_pred -----chHHHHHHHHHHHHHHHHHHHHhC
Confidence 334555566667888888888876
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-19 Score=172.33 Aligned_cols=218 Identities=16% Similarity=0.155 Sum_probs=148.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhh----HHHhCC
Q 045431 97 GYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDS----SVIMGQ 171 (433)
Q Consensus 97 ~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~----~~~~g~ 171 (433)
.+..|+ .+...+|++.++++. + .+++++++|+++++.+ +..++++||+|++++|+|..+... ....|
T Consensus 58 ~Y~r~~-~pt~~~Le~~lA~l~----g--~~~~l~~~sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~G- 129 (394)
T PRK07050 58 RYGLHA-TPTSLALAQRLAEIE----G--GRHALLQPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFG- 129 (394)
T ss_pred ccCCCC-CHHHHHHHHHHHHHh----C--CCeEEEeccHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHhcC-
Confidence 345563 445678888888875 4 4689999999999997 677899999999999999987653 33445
Q ss_pred cccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccc
Q 045431 172 TGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYI 251 (433)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~ 251 (433)
+++..++..+...+...+ .+++++|++++|+||+|. ..++++|+++|+++|+++|+|++|+...
T Consensus 130 -----------i~v~~vd~~~~~~l~~~i--~~~tklV~le~p~Np~~~---~~di~~I~~ia~~~gi~livD~a~a~~~ 193 (394)
T PRK07050 130 -----------ITVRFYDPLIGAGIADLI--QPNTRLIWLEAPGSVTME---VPDVPAITAAARARGVVTAIDNTYSAGL 193 (394)
T ss_pred -----------eEEEEECCCCHHHHHHhc--CCCCeEEEEECCCCCCcc---HhhHHHHHHHHHHcCCEEEEECCccccc
Confidence 366666543211111111 368999999999999975 6669999999999999999999998522
Q ss_pred cCCCCCcccccCCCCcceEEEecccccccccc--cceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHh
Q 045431 252 SDDNPRSIFEIPGAKEVAIETSSFSKYAGFTG--VRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLAC 329 (433)
Q Consensus 252 ~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G--~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 329 (433)
.. .++ .. +..+++.|++|.++ ++ .+.|++++.++.+ .+++...+.....+.++.....+...
T Consensus 194 ~~---~~l-~~----GaDi~v~S~tK~~~-g~~~~~gG~v~~~~~~~-------~~~~~~~~~~~G~~~~~~~a~l~lr~ 257 (394)
T PRK07050 194 AF---KPF-EH----GVDISVQALTKYQS-GGSDVLMGATITADAEL-------HAKLKLARMRLGIGVSADDCSLVLRG 257 (394)
T ss_pred cc---CHH-Hc----CCeEEEEECCceec-CCCCeeEEEEEECCHHH-------HHHHHHHHHhcCCCCCHHHHHHHHcC
Confidence 11 111 11 22488999999996 44 4578877754332 35565555444444555554433333
Q ss_pred cCcCChhHHHHHHHHHHHHHHHHHHHHhhc
Q 045431 330 LSPEGFKAVHEVIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 330 l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 359 (433)
++ .+..+.++..++...+.+.|+++
T Consensus 258 l~-----tl~~Rl~~~~~~a~~la~~L~~~ 282 (394)
T PRK07050 258 LP-----SLQVRLAAHDRSALEVAEWLKAR 282 (394)
T ss_pred CC-----cHHHHHHHHHHHHHHHHHHHHhC
Confidence 33 34455666677777888888876
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-18 Score=169.87 Aligned_cols=352 Identities=10% Similarity=0.051 Sum_probs=206.2
Q ss_pred HHHHHhcCCCCceEEecCCCC--CC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcE
Q 045431 53 KAAHMLKYPDAEVISLGIGDT--TE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDI 129 (433)
Q Consensus 53 ~~~~~~~~~~~~~i~l~~g~~--~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i 129 (433)
.+......+++..||+..|.. .+ ..+|.+.+++.+++.+... .....+ ......+|.+.|+++. +-..+.+
T Consensus 33 ~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~q~~~~~~-~~~~~~-~~~~~~~la~~L~~~~----~~~~~~v 106 (433)
T PRK08117 33 EGCYYYGVDGKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKLMH-GPSGVI-YYESILKLAEELAEIT----PGGLDCF 106 (433)
T ss_pred eeeEEEeCCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccC-cccccc-CCHHHHHHHHHHHHhC----CCCCCEE
Confidence 333344556778999987743 22 3678999999999876421 111112 2223344444444442 3334689
Q ss_pred EEcCChHHHHHH-HH--HhcCCCCEEEEeCCCChhhhhhHHHh-CCcccc-cccccccceEEEeecCccCC---------
Q 045431 130 FVSDGAKCDISR-LQ--IVFGSNVTMAVQDPSYPAYVDSSVIM-GQTGEF-QKDAEKYGKIEYMRCTAENG--------- 195 (433)
Q Consensus 130 ~~~~G~~~al~~-l~--~l~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~-~~~~~~~~~~~~~~~~~~~~--------- 195 (433)
++++++++|... +. .......+|+..+-+|++.......+ +....+ ..+......+..+|......
T Consensus 107 ~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (433)
T PRK08117 107 FFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEV 186 (433)
T ss_pred EEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhH
Confidence 998888888875 42 12333467888888887754333222 211110 00111111233333321000
Q ss_pred ----cccCCCC-------CCCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCccccc
Q 045431 196 ----FFPDLST-------VARTDIIFFCSP-NNPTGAA-ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEI 262 (433)
Q Consensus 196 ----~~~~~~~-------~~~~~~i~l~~p-~nPtG~~-~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~ 262 (433)
...+++. ..++.+ ++..| +.-.|.+ .+.+.+++|.++|++||+++|+||+|.++...+.......+
T Consensus 187 ~~~~~~~~l~~~~~~~~~~~~~aa-vi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~ 265 (433)
T PRK08117 187 CFLECLRDLESLFKHQVTPEEVAA-VIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTF 265 (433)
T ss_pred HHHHHHHHHHHHHHhccCCCcEEE-EEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhHhhc
Confidence 0001111 123444 44566 5556665 47889999999999999999999999987665543222222
Q ss_pred CCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHH
Q 045431 263 PGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVI 342 (433)
Q Consensus 263 ~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~ 342 (433)
+..+| +.||||.+| +|+++|+++++++++ +.+.......+.+.++++++++.+.|+.... +.+.
T Consensus 266 gv~pD----i~t~sK~lg-~G~pigav~~~~~i~--------~~~~~~~~~~T~~~np~~~aaa~a~L~~l~~---~~l~ 329 (433)
T PRK08117 266 GVVPD----IMTIAKGIA-SGLPLSAVVASKELM--------EQWPLGSHGTTFGGNPVACAAALATLEVIKE---EKLL 329 (433)
T ss_pred CCCCC----Eeehhhhcc-CCCcceeEEEcHHHH--------hhccCCCCCCCCCcCHHHHHHHHHHHHHHHh---ccHH
Confidence 21222 469999998 999999999998875 3333333444456789999988888873211 2344
Q ss_pred HHHHHHHHHHHHHHhhc----CCeeecCCCccEEEEECCCC------C-hHHHHHHHHHcCCeEecCCCCCCCCCCCeEE
Q 045431 343 GFYKENTDIIVETFNSL----GFKVYGGKNAPYVWVQFPGR------S-SWDVFSEILEKTHVVTTPGSGFGPGGEGFIR 411 (433)
Q Consensus 343 ~~~~~~~~~l~~~l~~~----g~~~~~~~~g~~~~~~~~~~------~-~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iR 411 (433)
++++++.+++.+.|+++ ++.......|.++++.+... . ...+...+ .++||.+.+.. ...+++|
T Consensus 330 ~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l-~~~Gv~~~~~g----~~~~~lR 404 (433)
T PRK08117 330 DNANEMGAYALERLEVLKEKHPVIGDVRGIGLMIGIEIVDPDGEPDGDAVEKILDKC-LEKGLLFYLCG----NAGNVLR 404 (433)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCceeeeecCCcEEEEEEecCCCCcchHHHHHHHHHH-HHCCCEEeecC----CCCCEEE
Confidence 55555566666666553 22221223567777777421 1 22344444 45699887632 1246899
Q ss_pred Ee--eccChhHHHHHHHHHHHhh
Q 045431 412 VS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 412 i~--~~~~~~~l~~~l~~l~~~l 432 (433)
++ +..+++++++++++|.+++
T Consensus 405 l~p~~~~t~~~i~~~~~~l~~~l 427 (433)
T PRK08117 405 MIPPLTVTKEEIDEGLDILDEAL 427 (433)
T ss_pred EeCCccCCHHHHHHHHHHHHHHH
Confidence 99 5679999999999998875
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.1e-19 Score=167.26 Aligned_cols=301 Identities=12% Similarity=0.147 Sum_probs=181.1
Q ss_pred hHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHh-cCCCCEEEEe
Q 045431 78 PEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIV-FGSNVTMAVQ 155 (433)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l-~~~gd~Vl~~ 155 (433)
.+...+++.+.+.. ... .|..++++++.+++.+..+ .+++++|+|+++++.+ +..+ ++|||+|+++
T Consensus 10 ~~~e~~a~~~~~~~----~~~------~~~g~~~~~~e~~la~~~g--~~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~ 77 (376)
T TIGR02379 10 TGQELEYIAEAISE----GKL------SGDGPFSRRCETWLENRTG--TKKALLTPSCTAALEMAALLLDIQPGDEVIMP 77 (376)
T ss_pred CHHHHHHHHHHHHc----CCc------cCCcHHHHHHHHHHHHHhC--CCeEEEeCCHHHHHHHHHHHcCCCCcCEEEEC
Confidence 45557778777653 111 1234566666666654334 4689999999999987 4565 7999999999
Q ss_pred CCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCC---CC--CCCccEEEEcCCCCccccCCCHHHHHHH
Q 045431 156 DPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDL---ST--VARTDIIFFCSPNNPTGAAATREQLTRL 230 (433)
Q Consensus 156 ~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~i~l~~p~nPtG~~~~~~~~~~i 230 (433)
+|+|..+...+...| .+++.++++++ ++..++ ++ .+++++|+ |+||+|...+ +++|
T Consensus 78 ~~t~~~~~~~~~~~G------------~~~v~vd~d~~-~~~~d~~~le~~i~~~tk~Ii---p~~~~G~~~d---~~~I 138 (376)
T TIGR02379 78 SYTFVSTANAFVLRG------------AKIVFVDIRPD-TMNIDETLIESAITHRTKAIV---PVHYAGVACD---MDTI 138 (376)
T ss_pred CCCcHHHHHHHHHcC------------CEEEEEecCCC-cCCCCHHHHHHhcCcCceEEE---EeCCCCCccC---HHHH
Confidence 999999988888888 58888888764 333343 21 35788876 6778999887 7789
Q ss_pred HHHHHHcCCEEEEeccccccc-cCCCCCcccccCCCCcceEEEeccc----ccccccccceeeeeccccccccCCcchhH
Q 045431 231 VQFAKDNGSIIVYDSAYALYI-SDDNPRSIFEIPGAKEVAIETSSFS----KYAGFTGVRLGWTVIPKELLFSDGFPVAK 305 (433)
Q Consensus 231 ~~~a~~~~~~li~De~~~~~~-~~~~~~~~~~~~~~~~~vi~i~S~s----K~~~~~G~r~G~l~~~~~~~~~~~~~~~~ 305 (433)
.++|++||++||+|++|+... +.+.+ +..+ ..+++|| |.+. +|.+.|+++++++.+ .+
T Consensus 139 ~~la~~~~i~vIeDaa~~~g~~~~~~~--~g~~-------~~~~~fSf~~~K~l~-~g~~gG~v~~~~~~~-------~~ 201 (376)
T TIGR02379 139 MALANKHQLFVIEDAAQGVMSTYKGRA--LGSI-------GHLGTFSFHETKNYT-SGGEGGALLINDQAF-------IE 201 (376)
T ss_pred HHHHHHCCCEEEEECccccCCccCCcc--cCCC-------CCEEEEeCCCCCcCc-ccCCceEEEECCHHH-------HH
Confidence 999999999999999998653 43321 2111 2234444 8885 788899988875443 24
Q ss_pred HHHHHHhhcc---------------------CCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc---C-
Q 045431 306 DFNRIVCTCF---------------------NGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL---G- 360 (433)
Q Consensus 306 ~~~~~~~~~~---------------------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---g- 360 (433)
+++.+..... ...+.+..+.+..-| +.+++..++-++..++..+.|.++ +
T Consensus 202 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL-----~~l~~~~~~r~~~~~~y~~~L~~~~~~~~ 276 (376)
T TIGR02379 202 RAEIIREKGTNRSQFFRGEVDKYTWRDIGSSYLPSELQAAYLWAQL-----EQADRINQDRLATWQLYQDALKPLEEKGI 276 (376)
T ss_pred HHHHHHHhCCCCccccccCCCcceeeeecccCCccHHHHHHHHHHH-----HHhHHHHHHHHHHHHHHHHHhccCCcCCe
Confidence 4444332110 111122211111112 223444444444444555666543 1
Q ss_pred Ceeec-CCCc----cEEEEECCC-CChHHHHHHHHHcCCeEecCCC----CCC------C-CC---------CCeEEEee
Q 045431 361 FKVYG-GKNA----PYVWVQFPG-RSSWDVFSEILEKTHVVTTPGS----GFG------P-GG---------EGFIRVSA 414 (433)
Q Consensus 361 ~~~~~-~~~g----~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~----~f~------~-~~---------~~~iRi~~ 414 (433)
..... +.+. .++++.++. .+..++...| +++||.+++.. ... . .. ...+.|-+
T Consensus 277 ~~~~~~~~~~~~~~~~~~i~~~~~~~r~~l~~~L-~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~l~LP~ 355 (376)
T TIGR02379 277 IELPSIPNGCQHNAHMFYIKLKDEDDRNELIKYL-KEQEIMAVFHYVPLHSSPAGRYFGRFHGEDIYTTKESERLVRLPL 355 (376)
T ss_pred eeCCCCCCCCeeeeEEEEEEECCcCCHHHHHHHH-HHCCCCccccCcCCCcchhHHhhCCCCCCChHHHHHHhceEEccC
Confidence 22211 1121 234566653 2345555555 55699887432 110 0 00 22355554
Q ss_pred c--cChhHHHHHHHHHHHhh
Q 045431 415 F--GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 415 ~--~~~~~l~~~l~~l~~~l 432 (433)
. .++++++..++.|++++
T Consensus 356 ~~~l~~~~~~~i~~~i~~~~ 375 (376)
T TIGR02379 356 YYGLSKEDQARVIQTICDYL 375 (376)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 3 37999999999998875
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.8e-19 Score=168.61 Aligned_cols=220 Identities=19% Similarity=0.206 Sum_probs=144.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHh-CCcccc
Q 045431 98 YSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIM-GQTGEF 175 (433)
Q Consensus 98 ~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~ 175 (433)
+..|+ .+...+|++.+|++. +.+ ..++++++++++.+ +..++++||+|+++.|.|......+... ...|
T Consensus 53 y~r~~-~p~~~~le~~lA~l~----g~~--~av~~~sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G-- 123 (391)
T TIGR01328 53 YSRLG-NPTVSNLEGRIAFLE----GTE--AAVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFG-- 123 (391)
T ss_pred eeCCC-CchHHHHHHHHHHHh----CCC--cEEEECCHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhcCC--
Confidence 34553 345678999999997 543 35666666778876 6778899999999999887654443321 1111
Q ss_pred cccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC
Q 045431 176 QKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN 255 (433)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~ 255 (433)
..+..++.++...+...+ .+++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|+.....
T Consensus 124 -------~~~~~vd~~d~e~l~~~i--~~~tklV~le~p~Np~G~v~d---l~~I~~la~~~gi~livD~a~a~~~~~-- 189 (391)
T TIGR01328 124 -------IQVDFINMAIPEEVKAHI--KDNTKIVYFETPANPTMKLID---MERVCRDAHSQGVKVIVDNTFATPMLT-- 189 (391)
T ss_pred -------eEEEEECCCCHHHHHHhh--ccCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCchhccC--
Confidence 366666654211111111 357899999999999999988 778888899999999999999853221
Q ss_pred CCcccccCCCCcceEEEecccccccccccce-eeeeccccccccCCcchhHHHHHHHhh--ccCCCcHHHHHHHHHhcCc
Q 045431 256 PRSIFEIPGAKEVAIETSSFSKYAGFTGVRL-GWTVIPKELLFSDGFPVAKDFNRIVCT--CFNGASNISQAGGLACLSP 332 (433)
Q Consensus 256 ~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~-G~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~ 332 (433)
.++ .. +..+++.|+||.+|.+|.++ |+++++++++ +.+...... .....++.....+...++
T Consensus 190 -~~~-~~----g~Divv~S~sK~lgg~g~~~gG~v~~~~~li--------~~l~~~~~~~~~g~~l~~~~a~l~l~~L~- 254 (391)
T TIGR01328 190 -NPV-AL----GVDVVVHSATKYIGGHGDVVAGLICGKAELL--------QQIRMVGIKDMTGSVISPFDAWLILRGLK- 254 (391)
T ss_pred -Cch-hc----CCCEEEccccccccCCCCceEEEEEcCHHHH--------HHHHHHHHHhCCCCCCCcHHHHHHHhCcC-
Confidence 112 11 12388899999998788774 7777777664 444432211 122234444443333332
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHhhc
Q 045431 333 EGFKAVHEVIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~l~~~l~~~ 359 (433)
.+..+.++.+++...+.+.|+++
T Consensus 255 ----tl~~r~~~~~~na~~la~~L~~~ 277 (391)
T TIGR01328 255 ----TLNIRMKRHSENAMKVAEYLKSH 277 (391)
T ss_pred ----cHHHHHHHHHHHHHHHHHHHHhC
Confidence 34556677788888899999886
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-18 Score=159.70 Aligned_cols=323 Identities=13% Similarity=0.160 Sum_probs=219.1
Q ss_pred CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCC-CcEEEcCChHHHHHH-HHHhcCCCCEE
Q 045431 75 EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEE-GDIFVSDGAKCDISR-LQIVFGSNVTM 152 (433)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~-~~i~~~~G~~~al~~-l~~l~~~gd~V 152 (433)
.+.++.+++++.+.. .... +.-..++-+.+.+.+..-++.+. +-++++++++.++.+ +.++++|||+|
T Consensus 14 ~~v~~~V~~am~~~~--------~~h~--s~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~~pgdkV 83 (383)
T COG0075 14 VPVPPRVLLAMARPM--------VGHR--SPDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLVEPGDKV 83 (383)
T ss_pred CCCCHHHHHHhcCCC--------CCCC--CHHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhccCCCCeE
Confidence 457788887777633 2222 22233444444444443445553 556677888889987 79999999999
Q ss_pred EEeCCCChhh--hhhHHHhCCcccccccccccceEEEeecCccCCcccC-----CCCCCCccEEEEcCCCCccccCCCHH
Q 045431 153 AVQDPSYPAY--VDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-----LSTVARTDIIFFCSPNNPTGAAATRE 225 (433)
Q Consensus 153 l~~~p~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~l~~p~nPtG~~~~~~ 225 (433)
++...+.++. .++++.+|. +++.+.......+.++ +++.+++++|.++|...+||+..+
T Consensus 84 Lv~~nG~FG~R~~~ia~~~g~------------~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnp-- 149 (383)
T COG0075 84 LVVVNGKFGERFAEIAERYGA------------EVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNP-- 149 (383)
T ss_pred EEEeCChHHHHHHHHHHHhCC------------ceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCc--
Confidence 9999988774 577777773 6666666543333332 334578899999999999999887
Q ss_pred HHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccC------
Q 045431 226 QLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSD------ 299 (433)
Q Consensus 226 ~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~------ 299 (433)
+++|+++|++||.++|+|.+-+. ++.+..+.++ +..+++++..|.++.| -.+|++.++++.+..-
T Consensus 150 -l~~I~~~~k~~g~l~iVDaVsS~---Gg~~~~vd~w----giDv~itgSQK~l~~P-PGla~v~~S~~a~e~~~~~~~~ 220 (383)
T COG0075 150 -LKEIAKAAKEHGALLIVDAVSSL---GGEPLKVDEW----GIDVAITGSQKALGAP-PGLAFVAVSERALEAIEERKHP 220 (383)
T ss_pred -HHHHHHHHHHcCCEEEEEecccC---CCcccchhhc----CccEEEecCchhccCC-CccceeEECHHHHHHHhcCCCC
Confidence 89999999999999999998772 2224434333 2348888889988733 2379999887775321
Q ss_pred -CcchhHHHHHHH---hhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCC---CccEE
Q 045431 300 -GFPVAKDFNRIV---CTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGK---NAPYV 372 (433)
Q Consensus 300 -~~~~~~~~~~~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~---~g~~~ 372 (433)
..-....+.+.. .....+++.....+..++|+....+.++.+.++++++.+.+++.++++|++..... .....
T Consensus 221 ~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~alGl~~~~~~~~~s~tvt 300 (383)
T COG0075 221 SFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEALGLELFADPERRSPTVT 300 (383)
T ss_pred ceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCccccCcccCCCceE
Confidence 111112222222 23334455555555566666544466899999999999999999999999886621 22345
Q ss_pred EEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec--cChhHHHHHHHHHHHhh
Q 045431 373 WVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF--GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 373 ~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~l~~~l~~l~~~l 432 (433)
.+..| +.+..+....+++++|+.+.+|.. +.....|||+.+ .+..++..++.+|..+|
T Consensus 301 a~~~P~g~~~~~~~~~~~~~~g~~i~gg~~--~l~gkifRIGhMG~~~~~dv~~~l~ale~~L 361 (383)
T COG0075 301 AIKVPEGVDDKKVRRALLKEYGVEIAGGQG--PLKGKIFRIGHMGNVRPEDVLAALAALEAAL 361 (383)
T ss_pred EEECCCCCCcHHHHHHHHHhCCEEeccccc--ccCccEEEEecCccCCHHHHHHHHHHHHHHH
Confidence 56666 455556666788888999988764 445678999953 37899999999998775
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.8e-19 Score=167.58 Aligned_cols=290 Identities=16% Similarity=0.144 Sum_probs=176.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHHHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccc
Q 045431 98 YSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQK 177 (433)
Q Consensus 98 ~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~ 177 (433)
+..| +.+...+|++++|++. ..+++++++|+++|+.++..++++||+|+++.+.|.+....+......+.
T Consensus 48 Y~R~-~~p~~~~le~~lA~le------g~~~~v~~~sG~aAi~~~l~~l~~GD~VI~~~~~yg~~~~~~~~~~~~~~--- 117 (364)
T PRK07269 48 YTRT-KNPTRAKLEETLAAIE------SADYALATSSGMSAIVLAFSVFPVGSKVVAVRDLYGGSFRWFNQQEKEGR--- 117 (364)
T ss_pred eeCC-CCccHHHHHHHHHHHh------CCCeEEEeCCHHHHHHHHHHHhCCCCEEEEecCCcCchHHHHHHHHhcCc---
Confidence 4455 3457899999999996 35799999999999998556789999999999999776554433321100
Q ss_pred cccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCC
Q 045431 178 DAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPR 257 (433)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~ 257 (433)
..+... .+.+ .+...+ .+++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|+.-... .
T Consensus 118 -----~~~~~~-~d~~-~l~~~i--~~~TklV~lesP~NPtg~~~d---i~~I~~la~~~gi~vvvD~t~~~~~~~---~ 182 (364)
T PRK07269 118 -----FHFTYA-NTEE-ELIAAI--EEDTDIVYIETPTNPLMVEFD---IEKVAKLAHAKGAKVIVDNTFYSPIYQ---R 182 (364)
T ss_pred -----EEEEec-CCHH-HHHHhc--CcCceEEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcccccC---C
Confidence 111111 1111 111111 368899999999999999876 888999999999999999997632211 2
Q ss_pred cccccCCCCcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChh
Q 045431 258 SIFEIPGAKEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFK 336 (433)
Q Consensus 258 ~~~~~~~~~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~ 336 (433)
++ .. .-.+++.|++|.++-.| .=.|+++++++.+ .+++...........+++....+..-|+
T Consensus 183 pl-~~----gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l-------~~~~~~~~~~~G~~~s~~~a~l~~~~L~----- 245 (364)
T PRK07269 183 PI-EL----GADIVLHSATKYLSGHNDVLAGVVVTNDLEL-------YEKLFYNLNTTGAVLSPFDSYLLMRGLK----- 245 (364)
T ss_pred ch-hh----CCcEEEecCceeccCCCcccceEEEeCcHHH-------HHHHHHHHHHhCCCCCHHHHHHHHcCCC-----
Confidence 22 11 12388999999996322 1247878754432 2444433332223345555544444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-CC-eee-cCCCccEEEEECCCCC-hHHHHHH---------HHHcCCeEecCCCCCC
Q 045431 337 AVHEVIGFYKENTDIIVETFNSL-GF-KVY-GGKNAPYVWVQFPGRS-SWDVFSE---------ILEKTHVVTTPGSGFG 403 (433)
Q Consensus 337 ~~~~~~~~~~~~~~~l~~~l~~~-g~-~~~-~~~~g~~~~~~~~~~~-~~~~~~~---------l~~~~gi~v~~g~~f~ 403 (433)
.+..+.++.+++...+.+.|+++ ++ .+. ++.+|+ +.+.+.+.. ...++.. +....++.+.|+..+.
T Consensus 246 tL~~r~~~~~~na~~~a~~L~~~p~v~~v~ypg~gg~-~sf~~~~~~~~~~f~~~l~~~~~~~slG~~~sl~~~p~~~~~ 324 (364)
T PRK07269 246 TLSLRMERSTANAQEVVAFLKKSPAVKEVLYTGKGGM-ISFKVADETRIPHILNSLKVFTFAESLGGVESLITYPTTQTH 324 (364)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCccEEeCCCcCcE-EEEEECCHHHHHHHHHhCCcceEccCCCCcCeEeeCCccccc
Confidence 35777778889999999999987 44 444 444454 444443211 1122221 1112345555654332
Q ss_pred C-----------CCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 404 P-----------GGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 404 ~-----------~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
. ..++.||||+..+ +.+.++.-|.++|
T Consensus 325 ~~~~~~~r~~~Gi~~~liRlsvGlE--~~~dli~dl~~al 362 (364)
T PRK07269 325 ADIPAEVRHSYGLTDDLLRLSIGIE--DARDLIADLKQAL 362 (364)
T ss_pred ccCCHHHHHhcCCCCCeEEEEeccC--CHHHHHHHHHHHh
Confidence 1 1257899997653 3444555555544
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.1e-19 Score=170.71 Aligned_cols=354 Identities=12% Similarity=0.063 Sum_probs=202.0
Q ss_pred HHHHHHhcCCCCceEEecCCCCC---CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCC---
Q 045431 52 RKAAHMLKYPDAEVISLGIGDTT---EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIE--- 125 (433)
Q Consensus 52 ~~~~~~~~~~~~~~i~l~~g~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~--- 125 (433)
..+......+++..||+..|.-. -..+|.+.+++.+++.+... .+.. ....+.+..+++.|.+....+
T Consensus 24 ~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~---~~~~---~~~~~~~~~lae~l~~~~~~~~~~ 97 (412)
T TIGR02407 24 AKGSTLWDEDGKEYIDFFAGAGALNYGHNNPKLKQALIDYLADDGI---IHSL---DMATEAKREFLETFNEIILKPRGL 97 (412)
T ss_pred cccCEEEeCCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhccc---eecc---ccCcHHHHHHHHHHHHhccCccCC
Confidence 33444455667789999776432 24689999999999875321 1110 112344555666554321111
Q ss_pred CCcEEE-cCChHHHHHH-H--HHhcCCCCEEEEeCCCChhhhhhHHHh-CCcccccccccccceEEEeecCccC----Cc
Q 045431 126 EGDIFV-SDGAKCDISR-L--QIVFGSNVTMAVQDPSYPAYVDSSVIM-GQTGEFQKDAEKYGKIEYMRCTAEN----GF 196 (433)
Q Consensus 126 ~~~i~~-~~G~~~al~~-l--~~l~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~----~~ 196 (433)
.+.+++ +++++++... + ........+|+..+.+|++........ +.......++.....+..+|..... +.
T Consensus 98 ~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 177 (412)
T TIGR02407 98 DYKVQFPGPTGTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDT 177 (412)
T ss_pred CceEEEeCCCchHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhH
Confidence 134655 5788888775 3 122234478998899998876444333 2211111122111233444432110 00
Q ss_pred ccCCC----CC----CCccEEEEcCC-CCcccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCC
Q 045431 197 FPDLS----TV----ARTDIIFFCSP-NNPTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAK 266 (433)
Q Consensus 197 ~~~~~----~~----~~~~~i~l~~p-~nPtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~ 266 (433)
...++ .. +++.+|+ ..| +++.|. ..+.+.+++|.++|++||+++|+||++..+...|.........-.+
T Consensus 178 ~~~l~~~~~~~~~~~~~~aavi-~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~P 256 (412)
T TIGR02407 178 IAYFEKLLEDSSSGVDLPAAVI-LETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEP 256 (412)
T ss_pred HHHHHHHHHhccCCCCceEEEE-eccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCCCC
Confidence 00011 11 2445555 455 788898 6799999999999999999999999998775544322221122224
Q ss_pred cceEEEeccccccccc-ccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcC----cCCh-hHHHH
Q 045431 267 EVAIETSSFSKYAGFT-GVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLS----PEGF-KAVHE 340 (433)
Q Consensus 267 ~~vi~i~S~sK~~~~~-G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~----~~~~-~~~~~ 340 (433)
| +.++||.++ + |+|+|++++++++ . .+.......+.+.++++.+++.+.++ +... +++++
T Consensus 257 D----i~~~~K~lg-~~G~pigav~~~~~~-~--------~~~~~~~~~T~~gnpl~~aaa~a~l~~~i~~~~l~~~~~~ 322 (412)
T TIGR02407 257 D----IVCLSKSIS-GYGLPLALTLIKPEL-D--------VWKPGEHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQR 322 (412)
T ss_pred C----EEEechhcc-CCccceeEEEEchhh-h--------ccCCCccCCCCCccHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 4 336899998 7 9999999998775 1 11112234455567775555454443 2211 22333
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCCCC-hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe--eccC
Q 045431 341 VIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRS-SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS--AFGH 417 (433)
Q Consensus 341 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~-~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~ 417 (433)
+.+.++++.+.+.+.+. ++.......|+++|+.++... ...+...++ ++||.+.+... ..+.+|++ +..+
T Consensus 323 ~g~~l~~~l~~l~~~~~--~~~~~vrg~Gl~~~l~l~~~~~~~~~~~~~~-~~Gv~v~~~~~----~~~~lr~~p~l~~t 395 (412)
T TIGR02407 323 KSEIIQERLDRIVAEYP--ELIKQVRGRGLMQGIECGDGDLAGKIAKAAF-ENGLIIETSGP----NDEVIKLLPPLTID 395 (412)
T ss_pred HHHHHHHHHHHHHhhCC--CceEeeecceeEEEEEecChHHHHHHHHHHH-HCCCEEeccCC----CCCEEEEECCCCCC
Confidence 33333333333222221 122222347899999997433 334555555 45999976432 24679998 4679
Q ss_pred hhHHHHHHHHHHHhhC
Q 045431 418 RGNVLEACKRFKHLYK 433 (433)
Q Consensus 418 ~~~l~~~l~~l~~~l~ 433 (433)
++++++++++|.++++
T Consensus 396 ~~~i~~~~~~l~~~l~ 411 (412)
T TIGR02407 396 EETLQQGLDILEQAVE 411 (412)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998864
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-18 Score=165.89 Aligned_cols=214 Identities=17% Similarity=0.143 Sum_probs=143.2
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCccccccccccc
Q 045431 104 EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKY 182 (433)
Q Consensus 104 ~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~ 182 (433)
.+...+|++.+|+++ +. +++++++|+++++.+ +..++++||+|+++.|+|.+....++.+...+
T Consensus 52 np~~~~lE~~lA~l~----g~--~~~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g--------- 116 (385)
T PRK08574 52 NPTLRPLEEALAKLE----GG--VDALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFG--------- 116 (385)
T ss_pred CccHHHHHHHHHHHh----CC--CcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHhhccC---------
Confidence 457889999999997 43 467778888888886 67889999999999999999877765443222
Q ss_pred ceEEEeecCccCCcccCCCCCC-CccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccc
Q 045431 183 GKIEYMRCTAENGFFPDLSTVA-RTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFE 261 (433)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~-~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~ 261 (433)
.++..+..+.+ .+...+ .+ ++++|++++|+||||.+++ +++|+++|+++|+++|+|++|+.... ..++ .
T Consensus 117 ~~v~~~~~d~~-~l~~~i--~~~~tklV~ie~p~NPtG~v~d---l~~I~~la~~~gi~livD~t~a~~~~---~~~l-~ 186 (385)
T PRK08574 117 VKVVLAYPSTE-DIIEAI--KEGRTKLVFIETMTNPTLKVID---VPEVAKAAKELGAILVVDNTFATPLL---YRPL-R 186 (385)
T ss_pred cEEEEECCCHH-HHHHhc--CccCceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCcccc---CChh-h
Confidence 24544433211 111111 23 7899999999999999998 67889999999999999999963211 1112 1
Q ss_pred cCCCCcceEEEecccccccccccce-eeeecc-ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHH
Q 045431 262 IPGAKEVAIETSSFSKYAGFTGVRL-GWTVIP-KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVH 339 (433)
Q Consensus 262 ~~~~~~~vi~i~S~sK~~~~~G~r~-G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~ 339 (433)
. +..+++.|++|.++.+|-.+ |++++. +++ .+++...........+++....+...++ .+.
T Consensus 187 ~----GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~--------~~~~~~~~~~~g~~~~p~~a~l~l~~l~-----tL~ 249 (385)
T PRK08574 187 H----GADFVVHSLTKYIAGHNDVVGGVAVAWSGEF--------LEELWEWRRRLGTIMQPFEAYLVLRGLK-----TLE 249 (385)
T ss_pred h----CCcEEEeeCceeecCCCCceeEEEEECcHHH--------HHHHHHHHHhcCCCCCHHHHHHHHcccC-----cHH
Confidence 1 23489999999997555544 656654 444 2444444433333344444433333333 345
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 045431 340 EVIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 340 ~~~~~~~~~~~~l~~~l~~~ 359 (433)
.+.++..++...+.+.|+++
T Consensus 250 ~R~~~~~~na~~la~~L~~~ 269 (385)
T PRK08574 250 VRFERQCRNAMAIAEFLSEH 269 (385)
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 56666677888888888876
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-18 Score=165.19 Aligned_cols=266 Identities=16% Similarity=0.118 Sum_probs=168.7
Q ss_pred CHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHHHHhcCCCCEEEEeCCCChhhhhhHH----HhCCccccccccccc
Q 045431 107 EKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSSV----IMGQTGEFQKDAEKY 182 (433)
Q Consensus 107 ~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l~~l~~~gd~Vl~~~p~~~~~~~~~~----~~g~~~~~~~~~~~~ 182 (433)
..+|++.+++++ +. ++++++++++.++.++..++++||+|+++++.|.+....+. ..|
T Consensus 49 ~~~le~~la~l~----g~--~~~l~~~sG~~al~~~l~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G------------ 110 (378)
T TIGR01329 49 RTALESLLAKLD----KA--DRAFAFSSGMAALDVITRLLNNGDEIIAGDDLYGGTDRLLTQVVPRSG------------ 110 (378)
T ss_pred HHHHHHHHHHHh----CC--CcEEEECCHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHHHHHcC------------
Confidence 456666677665 54 45666666677888765688999999999999988765433 345
Q ss_pred ceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCccccc
Q 045431 183 GKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEI 262 (433)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~ 262 (433)
.+++.++..+...+...+ .+++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|+.... ..++ ..
T Consensus 111 ~~v~~vd~~d~~~le~~i--~~~tklv~le~psnptg~v~d---l~~I~~la~~~g~~vivD~a~~~~~~---~~~l-~~ 181 (378)
T TIGR01329 111 VVVVHVDTTDLDKVKAAL--GPKTKLVLLESPTNPLQKIVD---IRKISEMAHAQNALVVVDNTMMSPLL---CNPL-EL 181 (378)
T ss_pred cEEEEeCCCCHHHHHHhc--CcCceEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCccccc---CChh-hc
Confidence 367777664222222112 268899999999999999887 89999999999999999999853211 1222 22
Q ss_pred CCCCcceEEEeccccccccc-ccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHH
Q 045431 263 PGAKEVAIETSSFSKYAGFT-GVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEV 341 (433)
Q Consensus 263 ~~~~~~vi~i~S~sK~~~~~-G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~ 341 (433)
+ -.+++.|++|.++.+ +++.|+++++++.+ .+++...........++.....+. .+.+.+..+
T Consensus 182 -g---~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~-------~~~~~~~~~~~G~~~~~~~a~l~~-----~~l~tl~~R 245 (378)
T TIGR01329 182 -G---ADIVYHSATKFLAGHSDVMAGVLAVKGEEI-------AKKVYFLQNSTGSGLAPFDCWLLL-----RGIKTLAIR 245 (378)
T ss_pred -C---CcEEEEecceeccCCccceeEEEEeCcHHH-------HHHHHHHHHhcCCcCCHHHHHHHH-----ccCCCHHHH
Confidence 1 238899999988632 46789998865543 244444443223333444332222 223345666
Q ss_pred HHHHHHHHHHHHHHHhhc-CC-eeecC----------------CCccEEEEECCCCC-hHHHHHHHHHcCCeEecCCCCC
Q 045431 342 IGFYKENTDIIVETFNSL-GF-KVYGG----------------KNAPYVWVQFPGRS-SWDVFSEILEKTHVVTTPGSGF 402 (433)
Q Consensus 342 ~~~~~~~~~~l~~~l~~~-g~-~~~~~----------------~~g~~~~~~~~~~~-~~~~~~~l~~~~gi~v~~g~~f 402 (433)
.++-.++...+.+.|+++ .+ .+..| ..|..+.+.+.+.. ..+++..| +..++.+.-|...
T Consensus 246 ~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~~~~~~~~~~~L-~~~~i~~s~G~~~ 324 (378)
T TIGR01329 246 IEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGSVALSKRLVEAT-KLFSITVSFGSVN 324 (378)
T ss_pred HHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECCHHHHHHHHHhC-cCcccccCCCCCC
Confidence 777778888888888876 22 22111 12345667774333 33555554 6667777777654
Q ss_pred CC---------------------CCCCeEEEeecc
Q 045431 403 GP---------------------GGEGFIRVSAFG 416 (433)
Q Consensus 403 ~~---------------------~~~~~iRi~~~~ 416 (433)
.- -.++.||||++.
T Consensus 325 sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl 359 (378)
T TIGR01329 325 SLISMPCFMSHASIPAEVREERGLPEDLVRLSVGI 359 (378)
T ss_pred ceeeCCCccccccCCHHHHHhcCCCCCeEEEEecc
Confidence 20 125689999865
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-18 Score=165.59 Aligned_cols=265 Identities=16% Similarity=0.126 Sum_probs=168.4
Q ss_pred CCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhh----hHHHhCCccccccccc
Q 045431 106 GEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVD----SSVIMGQTGEFQKDAE 180 (433)
Q Consensus 106 g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~----~~~~~g~~~~~~~~~~ 180 (433)
-..+|++.+|++. +.+ +.+++++| +.++.+ +..++++||+|+++.++|.+... .+...|
T Consensus 64 ~~~~le~~lA~l~----g~~-~av~~~sG-~~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G---------- 127 (389)
T PRK05968 64 TVRAFEEMLAKLE----GAE-DARGFASG-MAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRMG---------- 127 (389)
T ss_pred hHHHHHHHHHHHh----CCC-cEEEECCH-HHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcC----------
Confidence 4679999999986 553 45666555 567775 67788999999999999987543 334445
Q ss_pred ccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCccc
Q 045431 181 KYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIF 260 (433)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~ 260 (433)
.+++.++.++...+.. ..+++++|++++|+||+ ++..++++|.++|++||+++|+|++|+...+.. + +
T Consensus 128 --~~v~~vd~~d~~~l~~---~i~~tklV~ie~pt~~~---~~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~-p--~- 195 (389)
T PRK05968 128 --VEVDYVDGRDEEAVAK---ALPGAKLLYLESPTSWV---FELQDVAALAALAKRHGVVTMIDNSWASPVFQR-P--I- 195 (389)
T ss_pred --ceEEEeCCCCHHHHHH---hcccCCEEEEECCCCCC---CcHHHHHHHHHHHHHcCCEEEEECCCcchhccC-c--h-
Confidence 3666665532212211 12578999997666655 556789999999999999999999998643321 2 2
Q ss_pred ccCCCCcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHHHHh-hccCCCcHHHHHHHHHhcCcCChhHH
Q 045431 261 EIPGAKEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNRIVC-TCFNGASNISQAGGLACLSPEGFKAV 338 (433)
Q Consensus 261 ~~~~~~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~ 338 (433)
.. + ..+++.|+||.++.+| ++.|+++++++++ +++..... ......+++.+..+...|+ .+
T Consensus 196 ~~-g---~Divv~S~tK~l~g~~~~~gG~i~~~~~~~--------~~l~~~~~~~~g~~~~~~~A~~~l~~L~-----tl 258 (389)
T PRK05968 196 TL-G---VDLVIHSASKYLGGHSDTVAGVVAGSKEHI--------ARINAEAYPYLGAKLSPFEAWLLLRGLR-----TL 258 (389)
T ss_pred hc-C---CcEEEeeccccccCCCCeEEEEEEECHHHH--------HHHHHHHHHhCCCCCChHHHHHHHcccC-----cH
Confidence 11 1 2378889999997544 5789998887764 44443222 1223355555554444444 34
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-CCeeec-C-----------CCccEEEEECC-CCChHHHHHHHHHcCCeEecCCCCCC-
Q 045431 339 HEVIGFYKENTDIIVETFNSL-GFKVYG-G-----------KNAPYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFG- 403 (433)
Q Consensus 339 ~~~~~~~~~~~~~l~~~l~~~-g~~~~~-~-----------~~g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~- 403 (433)
..+.++..++.+.+.+.|+++ ++..+. | ..|..+.+.+. +....++...| +..++.+.-|..+.
T Consensus 259 ~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~~~~~~~f~~~L-~~~~~~~s~G~~~sl 337 (389)
T PRK05968 259 PLRMKAHEASALEIARRLKAHPVVERVCHPALANHPPAGLSGTSGLFSFIFREGIDVRAFADAL-KLFRLGVSWGGHESL 337 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCChHHhCCCCceEEEEEECCHHHHHHHHHhC-CccEEecCCCCCCce
Confidence 555666667788888999887 554332 2 12335666665 33334444444 44466666665554
Q ss_pred --C------------------CCCCeEEEeecc
Q 045431 404 --P------------------GGEGFIRVSAFG 416 (433)
Q Consensus 404 --~------------------~~~~~iRi~~~~ 416 (433)
+ ..++.||+|++.
T Consensus 338 v~p~~~~~~~~~~~~~~~~~gi~~~liR~SvGl 370 (389)
T PRK05968 338 VVPAEVVLQQKAQPNSAARFGVSPRSVRLHVGL 370 (389)
T ss_pred eeeCcccccccCCHHHHHhcCCCCCeEEEEecc
Confidence 0 115789999755
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-18 Score=169.35 Aligned_cols=354 Identities=10% Similarity=0.074 Sum_probs=213.6
Q ss_pred HHHHHHHhcCCCCceEEecCCCC--CC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCC-C
Q 045431 51 RRKAAHMLKYPDAEVISLGIGDT--TE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIE-E 126 (433)
Q Consensus 51 ~~~~~~~~~~~~~~~i~l~~g~~--~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~-~ 126 (433)
+..+......+++..||+..|.- .+ ..++.+.+++.+++.+.. .+.......+.+..+|+.+.+..+.. .
T Consensus 44 ~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~------~~~~~~~~~~~~~~la~~l~~~~p~~~~ 117 (443)
T PRK06058 44 RAGGGIVEDVDGNRLIDLGSGIAVTSVGNSAPRVVEAVREQVARFT------HTCFMVTPYEGYVAVAEQLNRLTPGDHE 117 (443)
T ss_pred eeeeeEEEeCCCCEEEEcCcchhhhccCCCCHHHHHHHHHHHHhcc------CccccccCCHHHHHHHHHHHHhCCCCCC
Confidence 34444455567788999977652 22 468999999999987531 11111223466666777765432322 2
Q ss_pred CcEEEcCChHHHHHH-HH--HhcCCCCEEEEeCCCChhhhhhHHHhCC-cccc-cccccccceEEEeecCcc-CC---c-
Q 045431 127 GDIFVSDGAKCDISR-LQ--IVFGSNVTMAVQDPSYPAYVDSSVIMGQ-TGEF-QKDAEKYGKIEYMRCTAE-NG---F- 196 (433)
Q Consensus 127 ~~i~~~~G~~~al~~-l~--~l~~~gd~Vl~~~p~~~~~~~~~~~~g~-~~~~-~~~~~~~~~~~~~~~~~~-~~---~- 196 (433)
+.+++++++++|... +. ......++|+..+++|++.......+.. ...+ ..++.....+..++.... .. .
T Consensus 118 ~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (443)
T PRK06058 118 KRSALFNSGAEAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLA 197 (443)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccc
Confidence 578888888998875 32 2233457899999999987654443321 1000 000100112222221100 00 0
Q ss_pred ----------ccCCCC---CCCccEEEEcCCCCccc-cC-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccc
Q 045431 197 ----------FPDLST---VARTDIIFFCSPNNPTG-AA-ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFE 261 (433)
Q Consensus 197 ----------~~~~~~---~~~~~~i~l~~p~nPtG-~~-~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~ 261 (433)
...+++ ..++.+| +..|.+..| .. .+++.+++|.++|++||+++|.||++.+|...+.......
T Consensus 198 ~~~~~~~~~~~~~l~~~~~~~~iAav-i~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~ 276 (443)
T PRK06058 198 TDGEEAAARAITVIEKQVGADNLAAV-IIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEH 276 (443)
T ss_pred cchHHHHHHHHHHHHHhhCCCceEEE-EECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHHHh
Confidence 000111 1345554 467865554 43 4688999999999999999999999998866554322222
Q ss_pred cCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHH
Q 045431 262 IPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEV 341 (433)
Q Consensus 262 ~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~ 341 (433)
++-.+| ++ +++|.++ +|+++|+++++++++ +.+.......+.+.++++++++.+.|+.... +++
T Consensus 277 ~gv~PD-iv---~~gK~l~-~G~Pi~av~~~~~i~--------~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~---~~l 340 (443)
T PRK06058 277 EGIVPD-LI---TTAKGIA-GGLPLSAVTGRAEIM--------DAPHPGGLGGTYGGNPVACAAALAAIETIEE---DDL 340 (443)
T ss_pred cCCCCC-EE---EEccccc-CCCccEEEEEcHHHH--------hhccCCCCCCCCCCCHHHHHHHHHHHHHHHH---cCH
Confidence 222244 33 5689998 999999999998874 3333333455667899999999999863221 345
Q ss_pred HHHHHHHHHHHHHHHhhc----CC-eeecCCCccEEEEECCCC----C----hHHHHHHHHHcCCeEecCCCCCCCCCCC
Q 045431 342 IGFYKENTDIIVETFNSL----GF-KVYGGKNAPYVWVQFPGR----S----SWDVFSEILEKTHVVTTPGSGFGPGGEG 408 (433)
Q Consensus 342 ~~~~~~~~~~l~~~l~~~----g~-~~~~~~~g~~~~~~~~~~----~----~~~~~~~l~~~~gi~v~~g~~f~~~~~~ 408 (433)
.++++++.+++.+.|+++ ++ .-+.+ .|.++.+.+... . ...+...++ ++||.+.++..|+ +
T Consensus 341 ~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg-~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~-~~Gv~~~~~~~~~----~ 414 (443)
T PRK06058 341 VARARQIEALMTDRLRALAAEDDRIGDVRG-RGAMIAIELVKPGTTEPDAELTKALAAAAH-AAGVIVLTCGTYG----N 414 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEeeec-cceEEEEEEecCCCCCCcHHHHHHHHHHHH-HCCeEEeccCCCC----C
Confidence 566666777777777654 22 11333 445555555311 1 123444444 4599998865442 5
Q ss_pred eEEEe--eccChhHHHHHHHHHHHhhC
Q 045431 409 FIRVS--AFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 409 ~iRi~--~~~~~~~l~~~l~~l~~~l~ 433 (433)
.+|+. +..+++++++++++|.++++
T Consensus 415 ~lr~~Ppl~~t~~~i~~~~~~l~~~l~ 441 (443)
T PRK06058 415 VIRLLPPLVIGDELLREGLDVLEAALA 441 (443)
T ss_pred EEEEECCCccCHHHHHHHHHHHHHHHH
Confidence 89997 67799999999999998863
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.1e-18 Score=164.56 Aligned_cols=280 Identities=15% Similarity=0.184 Sum_probs=174.0
Q ss_pred CCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHHHHhcCCCCEEEEeCCCChhhhhh----HHHhCCccccccccc
Q 045431 105 QGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDS----SVIMGQTGEFQKDAE 180 (433)
Q Consensus 105 ~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l~~l~~~gd~Vl~~~p~~~~~~~~----~~~~g~~~~~~~~~~ 180 (433)
.-..+|++.+|++. +.+ +.+++++| +.++.++..++++||+|++++|.|++.... ++..|
T Consensus 54 p~~~~le~~lA~l~----g~~-~~v~~~sG-~~ai~~~l~~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G---------- 117 (390)
T PRK08064 54 PTREALEDIIAELE----GGT-KGFAFASG-MAAISTAFLLLSKGDHVLISEDVYGGTYRMITEVLSRFG---------- 117 (390)
T ss_pred hhHHHHHHHHHHHh----CCC-CeEEECCH-HHHHHHHHHHhCCCCEEEEccCccchHHHHHHHHHHHcC----------
Confidence 34678899999986 655 56777666 557776445789999999999999864433 33345
Q ss_pred ccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCccc
Q 045431 181 KYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIF 260 (433)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~ 260 (433)
.++..++.++...+...+ .+++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|+..... .++
T Consensus 118 --~~v~~v~~~d~~~l~~~l--~~~tklV~l~~p~NptG~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~~---~~~- 186 (390)
T PRK08064 118 --IEHTFVDMTNLEEVAQNI--KPNTKLFYVETPSNPLLKVTD---IRGVVKLAKAIGCLTFVDNTFLTPLLQ---KPL- 186 (390)
T ss_pred --CEEEEECCCCHHHHHHhc--CCCceEEEEECCCCCCcEecc---HHHHHHHHHHcCCEEEEECCCCccccc---Cch-
Confidence 367777663211111111 357899999999999999987 788888899999999999998854221 112
Q ss_pred ccCCCCcceEEEeccccccc-ccccceeeeeccc-cccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHH
Q 045431 261 EIPGAKEVAIETSSFSKYAG-FTGVRLGWTVIPK-ELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAV 338 (433)
Q Consensus 261 ~~~~~~~~vi~i~S~sK~~~-~~G~r~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~ 338 (433)
.+ +..+++.|+||.++ .+|...|++++++ ++ .+.+...........++ +.+.. .+ .+.+.+
T Consensus 187 ~~----g~Divv~S~tK~~~G~~~~laG~~v~~~~~~--------~~~l~~~~~~~g~~~~~--~~a~l-~~--~gl~tl 249 (390)
T PRK08064 187 DL----GADVVLHSATKFLAGHSDVLAGLAVVKDEEL--------AQKLYFLQNSFGAVLGV--QDCWL-VL--RGLKTL 249 (390)
T ss_pred hh----CCcEEEeecceeccCCccceeEEEEeCCHHH--------HHHHHHHHHhcCCCCCH--HHHHH-HH--cccCcH
Confidence 22 23488999999985 2334567777654 44 35555554433322222 33222 22 233445
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC-C-eeecC----------------CCccEEEEECCCCChHHHHHHHHHcCCe---Eec
Q 045431 339 HEVIGFYKENTDIIVETFNSLG-F-KVYGG----------------KNAPYVWVQFPGRSSWDVFSEILEKTHV---VTT 397 (433)
Q Consensus 339 ~~~~~~~~~~~~~l~~~l~~~g-~-~~~~~----------------~~g~~~~~~~~~~~~~~~~~~l~~~~gi---~v~ 397 (433)
..+.++..++...+.+.|+++. + .+..| ..|..+.+.+.+ .+.+..++...++ .+.
T Consensus 250 ~~R~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~~---~~~~~~f~~~l~l~~~~~s 326 (390)
T PRK08064 250 HVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQS---EEAVRQFVSHVKLPVFAVS 326 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEECC---HHHHHHHHHhCCcceEccc
Confidence 6777777888888888888762 2 22111 123456677753 2334455566566 444
Q ss_pred CCCCC------------CC---------CCCCeEEEeecc--ChhHHHHHHHHHHHh
Q 045431 398 PGSGF------------GP---------GGEGFIRVSAFG--HRGNVLEACKRFKHL 431 (433)
Q Consensus 398 ~g~~f------------~~---------~~~~~iRi~~~~--~~~~l~~~l~~l~~~ 431 (433)
-|..+ .. -.++.+|+|++. .++.++.+.++|+++
T Consensus 327 ~G~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~SvGle~~~dli~dl~~Al~~~ 383 (390)
T PRK08064 327 LGAVESILSYPAKMSHAAMPKEERDERGITDGLLRLSVGLENVDDLIADFEQALSYV 383 (390)
T ss_pred CCCCcceeECCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHhc
Confidence 44211 10 125789999754 455566666666553
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.7e-18 Score=178.93 Aligned_cols=342 Identities=15% Similarity=0.118 Sum_probs=211.8
Q ss_pred eEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCC----CCCCHHHHHHHHHHHhccCCCCCC--cEEEcCChHHH
Q 045431 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA----EQGEKPLRAAIASTFYKDLGIEEG--DIFVSDGAKCD 138 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~----~~g~~~lr~~la~~l~~~~~~~~~--~i~~~~G~~~a 138 (433)
++.|..+....+++..+.+++.+.+.......+ ..|.. ..-..+.|+.+++++ +++++ +|++|+|++++
T Consensus 35 ~iYLD~Aatt~~~~~~V~~~~~~~~~~~~~np~-s~~~~s~~~~~~~e~aR~~ia~~l----ga~~~~~~VvFtsnaT~a 109 (805)
T PLN02724 35 VVYLDHAGATLYSESQLEAALADFSSNVYGNPH-SQSDSSMRSSDTIESARQQVLEYF----NAPPSDYACVFTSGATAA 109 (805)
T ss_pred CEeEeCCCCCCCCHHHHHHHHHHHHhhccCCCC-cCcchhhhHHHHHHHHHHHHHHHh----CCCccceEEEEeCChHHH
Confidence 688887765544555666665555443211111 12211 223667888888887 88665 58999999999
Q ss_pred HHHH-HHh-cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCc--------cCCcc---cCCCC---
Q 045431 139 ISRL-QIV-FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTA--------ENGFF---PDLST--- 202 (433)
Q Consensus 139 l~~l-~~l-~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~---~~~~~--- 202 (433)
++++ ..+ +++||+|++..-.|++.....+.+...| ..+..++.+. .+... .+++.
T Consensus 110 lnlva~~l~~~~gd~Iv~t~~eH~svl~~~~~a~~~G---------~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~ 180 (805)
T PLN02724 110 LKLVGETFPWSSESHFCYTLENHNSVLGIREYALEKG---------AAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNT 180 (805)
T ss_pred HHHHHHHCCCCCCCeEEEeeccccchHHHHHHHHHcC---------CeEEeccchhccccccccccccccchhhhhhhhh
Confidence 9985 444 6899999998888888776554443333 2666666541 11111 11111
Q ss_pred ---------CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHc-----CCEEEEeccccccccCCCCCcccccCCCCcc
Q 045431 203 ---------VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDN-----GSIIVYDSAYALYISDDNPRSIFEIPGAKEV 268 (433)
Q Consensus 203 ---------~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~-----~~~li~De~~~~~~~~~~~~~~~~~~~~~~~ 268 (433)
.++++++.+++-+|-||..+|.+.++++.+.++.+ ++++++|.+++--. .+..+..++ .
T Consensus 181 ~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~---~piDv~~~~----~ 253 (805)
T PLN02724 181 SKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGT---SPPDLSRYP----A 253 (805)
T ss_pred hhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCC---CCCChhhcC----C
Confidence 13567888889999999999976554444433222 36899999987321 144444432 2
Q ss_pred eEEEeccccccc-ccccceeeeeccccccccCCcchh------------------H-HHHHHHhhccCCCcHHHHHHHHH
Q 045431 269 AIETSSFSKYAG-FTGVRLGWTVIPKELLFSDGFPVA------------------K-DFNRIVCTCFNGASNISQAGGLA 328 (433)
Q Consensus 269 vi~i~S~sK~~~-~~G~r~G~l~~~~~~~~~~~~~~~------------------~-~~~~~~~~~~~~~~~~~q~~~~~ 328 (433)
.+++.|++|++| ..| +|+++++++.+....+... . .-.++...+.+..+.++..+++.
T Consensus 254 Dfl~~S~HK~~GgP~G--~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~ 331 (805)
T PLN02724 254 DFVVVSFYKIFGYPTG--LGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFK 331 (805)
T ss_pred CEEEEecceeccCCCC--ceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHH
Confidence 488999999997 334 8999988876421111000 0 01222333333333344444444
Q ss_pred hcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-------CCeeecCC--------CccEEEEECCCCC----hHHHHHHHH
Q 045431 329 CLSPEGFKAVHEVIGFYKENTDIIVETFNSL-------GFKVYGGK--------NAPYVWVQFPGRS----SWDVFSEIL 389 (433)
Q Consensus 329 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-------g~~~~~~~--------~g~~~~~~~~~~~----~~~~~~~l~ 389 (433)
++...+ ++++.++.++..+++.+.|+++ ++.++++. .+..+.+.+.+.+ ....+..++
T Consensus 332 ~l~~ig---~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~~v~~l~ 408 (805)
T PLN02724 332 LLNRLT---ISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHREVEKLA 408 (805)
T ss_pred HHHHhC---hHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHHHHHHHH
Confidence 554333 4777888888999999999876 25666532 3445555555332 223356667
Q ss_pred HcCCeEecCCCCCCCC---------------------------------CCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 390 EKTHVVTTPGSGFGPG---------------------------------GEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 390 ~~~gi~v~~g~~f~~~---------------------------------~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
.++||.++.|..|.+. ..+.+|+|| +++.+|++.+++.|++..
T Consensus 409 ~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~ 486 (805)
T PLN02724 409 SLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSF 486 (805)
T ss_pred HhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHh
Confidence 7789999999887521 137899996 679999999999998853
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.9e-18 Score=164.17 Aligned_cols=165 Identities=16% Similarity=0.197 Sum_probs=119.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhh----HHHhCCc
Q 045431 98 YSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDS----SVIMGQT 172 (433)
Q Consensus 98 ~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~----~~~~g~~ 172 (433)
+..|+ .+-..+|++.+|++. +. +..++++++++++.. +..++++||+|++..+.|++.... +...|
T Consensus 51 ysr~~-~p~~~~le~~lA~l~----g~--~~~v~~~sG~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G-- 121 (418)
T TIGR01326 51 YSRLM-NPTTDVLEQRIAALE----GG--VAALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLG-- 121 (418)
T ss_pred eECCC-ChhHHHHHHHHHHHh----CC--CeEEEEccHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHHHcC--
Confidence 34453 345688999999986 53 456778888888876 678899999999999999765433 34455
Q ss_pred ccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEecccccccc
Q 045431 173 GEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYIS 252 (433)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~ 252 (433)
.+++.++.++...+...+ .+++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|+....
T Consensus 122 ----------~~v~~v~~~d~~~l~~~l--~~~t~~V~le~p~NPtg~v~d---l~~I~~la~~~~i~livD~t~~~~~~ 186 (418)
T TIGR01326 122 ----------IEVRFVDPDDPEEFEKAI--DENTKAVFAETIGNPAINVPD---IEAIAEVAHAHGVPLIVDNTFATPYL 186 (418)
T ss_pred ----------cEEEEECCCCHHHHHHhc--CcCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCchhhc
Confidence 366666653211111111 257899999999999999887 78899999999999999999974211
Q ss_pred CCCCCcccccCCCCcceEEEecccccccccccceeeeecccc
Q 045431 253 DDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKE 294 (433)
Q Consensus 253 ~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~ 294 (433)
..++ . .+..+++.|+||.++.+|+|+||+++++.
T Consensus 187 ---~~~l-~----~g~Divv~S~sK~l~g~G~~lGg~v~~~~ 220 (418)
T TIGR01326 187 ---CRPI-D----HGADIVVHSATKYIGGHGTAIGGVIVDGG 220 (418)
T ss_pred ---CCch-h----cCCeEEEECccccccCCccceEEEEEecc
Confidence 1111 1 13469999999999988999999998653
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.6e-18 Score=160.55 Aligned_cols=214 Identities=16% Similarity=0.197 Sum_probs=144.9
Q ss_pred CCCCCCCCC---HHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhH----HHhC
Q 045431 99 SGYGAEQGE---KPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSS----VIMG 170 (433)
Q Consensus 99 ~~Y~~~~g~---~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~----~~~g 170 (433)
..|+. .|+ ..|++.+|++. + .+++++++|+++|+.+ +.+++++||+|++++|.|++....+ ...|
T Consensus 42 ~~Y~r-~gnPt~~~lE~~lA~l~----g--~~~~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~g 114 (377)
T TIGR01324 42 LTYGR-RGTLTHFALQDAMCELE----G--GAGCYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMG 114 (377)
T ss_pred CcccC-CCCccHHHHHHHHHHHh----C--CCcEEEECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhcC
Confidence 34653 455 59999999986 4 3589999999999986 6788999999999999998765433 2334
Q ss_pred CcccccccccccceEEEeecCccCCcccCCCC--CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEecccc
Q 045431 171 QTGEFQKDAEKYGKIEYMRCTAENGFFPDLST--VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYA 248 (433)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~ 248 (433)
.++..++...+ ..+++ .+++|+|++++|+||+|.. .++++|+++|+++|+++|+|++|+
T Consensus 115 ------------i~v~~~d~~~~----e~l~~~i~~~tklV~lesp~Np~g~~---~dl~~I~~la~~~g~~livD~t~a 175 (377)
T TIGR01324 115 ------------VDITYYDPLIG----EDIATLIQPNTKVLFLEAPSSITFEI---QDIPAIAKAARNPGIVIMIDNTWA 175 (377)
T ss_pred ------------cEEEEECCCCH----HHHHHhcCCCceEEEEECCCCCCCcH---HHHHHHHHHHHHcCCEEEEECCCc
Confidence 25555443221 12222 3679999999999999875 459999999999999999999998
Q ss_pred ccccCCCCCcccccCCCCcceEEEeccccccccc-ccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHH
Q 045431 249 LYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFT-GVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGL 327 (433)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~-G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~ 327 (433)
..... .++ .. +..+++.|++|.++-+ +...|+++++++.+ +.+...........++....
T Consensus 176 ~g~~~---~pl-~~----gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~--------~~l~~~~~~~G~~l~p~~a~--- 236 (377)
T TIGR01324 176 AGLLF---KPL-EH----GVDISIQAGTKYLVGHSDIMIGTVVANARTW--------DQLREHSYLMGQMVDADDAY--- 236 (377)
T ss_pred ccccc---Ccc-cc----CceEEEecCceeccCCCCceEEEEEeCHHHH--------HHHHHHHHHhCCCCCHHHHH---
Confidence 42211 111 11 2348999999999633 35678888887653 33433222222233443322
Q ss_pred HhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc
Q 045431 328 ACLSPEGFKAVHEVIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 328 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 359 (433)
..+ .+.+.+..+.++..++...+.+.|+++
T Consensus 237 ~~~--rgl~tl~~R~~~~~~~a~~la~~L~~~ 266 (377)
T TIGR01324 237 TTL--RGLRTLGVRLKQHQESSLAIAKWLSEQ 266 (377)
T ss_pred HHH--hhhhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 222 233455666777788888888888876
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.2e-18 Score=163.46 Aligned_cols=220 Identities=18% Similarity=0.202 Sum_probs=143.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHHHHhcCCCCEEEEeCCCChhhhhhH----HHhCCccc
Q 045431 99 SGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSS----VIMGQTGE 174 (433)
Q Consensus 99 ~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l~~l~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~ 174 (433)
..|+.. |.+ .++++.+++++..+ .++.++++|+++++.++..++++||+|++++|.|+++...+ ...|
T Consensus 125 ~~Y~r~-gnp-t~~aLE~~lA~leg--~e~ai~~~SG~aAi~~il~ll~~GD~VI~~~~~y~~t~~ll~~~l~~~G---- 196 (464)
T PLN02509 125 YDYTRS-GNP-TRDALESLLAKLDK--ADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSG---- 196 (464)
T ss_pred CccCCC-CCH-HHHHHHHHHHHHhC--CCEEEEeCcHHHHHHHHHHHhCCCCEEEEcCCchhhHHHHHHHHHHHCC----
Confidence 467554 665 57777777765333 35666767778888876678999999999999999876444 3445
Q ss_pred ccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC
Q 045431 175 FQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDD 254 (433)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~ 254 (433)
..+..++..+...+...+ .+++++|++++|+||||.+ .++++|+++|++||+++|+|++|+.... +
T Consensus 197 --------~~v~~vd~~d~e~l~~ai--~~~TklV~lesPsNPtG~i---~Dl~~I~~lAk~~g~~lIVD~A~a~~~~-~ 262 (464)
T PLN02509 197 --------VVVKRVNTTNLDEVAAAI--GPQTKLVWLESPTNPRQQI---SDIRKIAEMAHAQGALVLVDNSIMSPVL-S 262 (464)
T ss_pred --------eEEEEeCCCCHHHHHHhC--CcCCeEEEEECCCCCCCCH---HHHHHHHHHHHHcCCEEEEECCcccccc-C
Confidence 355555543211111111 3578999999999999985 5599999999999999999999874322 1
Q ss_pred CCCcccccCCCCcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcC
Q 045431 255 NPRSIFEIPGAKEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPE 333 (433)
Q Consensus 255 ~~~~~~~~~~~~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~ 333 (433)
.+ + .. +..+++.|++|.++.+| .-.|++++.++.+ .+.+...........++.....+. .
T Consensus 263 ~p--l-~~----gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l-------~~~~~~~~~~~g~~l~p~~A~l~l-----r 323 (464)
T PLN02509 263 RP--L-EL----GADIVMHSATKFIAGHSDVMAGVLAVKGEKL-------AKEVYFLQNSEGSGLAPFDCWLCL-----R 323 (464)
T ss_pred Ch--h-hc----CCcEEEecCcccccCCCccceeEEEeccHHH-------HHHHHHHHHhcCCCcCHHHHHHHH-----h
Confidence 11 1 11 12388999999986323 2357777655543 233332222222223333322222 2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhc
Q 045431 334 GFKAVHEVIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~l~~~l~~~ 359 (433)
+.+.+..+.++.+++++.+.+.|+++
T Consensus 324 ~L~tL~~R~~r~~~nA~~la~~L~~~ 349 (464)
T PLN02509 324 GIKTMALRIEKQQENARKIAMYLSSH 349 (464)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 34556778888889999999999887
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-17 Score=160.66 Aligned_cols=305 Identities=11% Similarity=0.113 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHh-cCCCCEEEEeC
Q 045431 79 EVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIV-FGSNVTMAVQD 156 (433)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l-~~~gd~Vl~~~ 156 (433)
+.-.+++.+.+.. .. .| |..++++++++++++.++. +++++++|+++++.+ +..+ +++||+|+++.
T Consensus 11 ~~~~~~~~~~l~~----~~--~~----g~~~~~~~~e~~la~~~g~--~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~ 78 (375)
T PRK11706 11 GTELDYIQQAMSS----GK--LC----GDGGFTRRCQQWLEQRFGS--AKVLLTPSCTAALEMAALLLDIQPGDEVIMPS 78 (375)
T ss_pred HHHHHHHHHHHHc----CC--cc----CCCHHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHHhCCCCCCEEEECC
Confidence 3445667766642 11 12 3456667776666554344 689999999999987 4444 68999999999
Q ss_pred CCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCC---CC--CCCccEEEEcCCCCccccCCCHHHHHHHH
Q 045431 157 PSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDL---ST--VARTDIIFFCSPNNPTGAAATREQLTRLV 231 (433)
Q Consensus 157 p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~i~l~~p~nPtG~~~~~~~~~~i~ 231 (433)
|+|+.+...+...| .+++.+++++++ +..++ ++ .+++++|+++ |+||...+ +++|.
T Consensus 79 ~t~~~~~~~~~~~G------------~~~v~~d~d~~~-~~~d~~~le~~i~~~tk~i~~~---~~~G~~~~---~~~i~ 139 (375)
T PRK11706 79 YTFVSTANAFVLRG------------AKIVFVDIRPDT-MNIDETLIEAAITPKTRAIVPV---HYAGVACE---MDTIM 139 (375)
T ss_pred CCcHHHHHHHHHcC------------CEEEEEecCCCc-CCcCHHHHHHhcCCCCeEEEEe---CCCCCccC---HHHHH
Confidence 99999999999888 478888887543 33332 22 3578888875 46898766 78899
Q ss_pred HHHHHcCCEEEEeccccccc-cCCCCCcccccCCCCcceEEEeccc--ccccccccceeeeeccccccccCCcchhHHHH
Q 045431 232 QFAKDNGSIIVYDSAYALYI-SDDNPRSIFEIPGAKEVAIETSSFS--KYAGFTGVRLGWTVIPKELLFSDGFPVAKDFN 308 (433)
Q Consensus 232 ~~a~~~~~~li~De~~~~~~-~~~~~~~~~~~~~~~~~vi~i~S~s--K~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~ 308 (433)
++|++||++||+|++|+.+. +.+. ++..+ .+ +.+.||+ |.++ +|.+.++++.++++. +++.
T Consensus 140 ~la~~~~i~vIeD~a~a~g~~~~~~--~~g~~---~~--~~~~Sf~~~K~l~-~g~gG~~~~~~~~~~--------~~~~ 203 (375)
T PRK11706 140 ALAKKHNLFVVEDAAQGVMSTYKGR--ALGTI---GH--IGCFSFHETKNYT-AGEGGALLINDPALI--------ERAE 203 (375)
T ss_pred HHHHHcCCEEEEECccccccccCCe--eeecC---cC--EEEEeCCCCcccc-ccCCeEEEECCHHHH--------HHHH
Confidence 99999999999999999654 3322 22222 11 3334544 9996 788877777666664 3333
Q ss_pred HHHhhc-----------------cCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcC----Ceee-cC
Q 045431 309 RIVCTC-----------------FNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLG----FKVY-GG 366 (433)
Q Consensus 309 ~~~~~~-----------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g----~~~~-~~ 366 (433)
...... ..+.+...+....++.. ...+.+++..++-+++.+.+.+.|.++. +.+. .+
T Consensus 204 ~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~-~ql~~l~~~~~~R~~~~~~~~~~L~~~~~~~~~~~~~~~ 282 (375)
T PRK11706 204 IIREKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLW-AQLEAADRINQRRLALWQRYYDALAPLAEAGRIELPSIP 282 (375)
T ss_pred HHHHcCCCcchhhccCCCcceeeecccccCcCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeecCCCC
Confidence 333211 01222221111111111 1113345556666666677777777652 3322 12
Q ss_pred CC----ccEEEEECCC-CChHHHHHHHHHcCCeEecCCC----CC---CC----CC---------CCeEEEeec--cChh
Q 045431 367 KN----APYVWVQFPG-RSSWDVFSEILEKTHVVTTPGS----GF---GP----GG---------EGFIRVSAF--GHRG 419 (433)
Q Consensus 367 ~~----g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~----~f---~~----~~---------~~~iRi~~~--~~~~ 419 (433)
.+ ..++|+.++. ....++.+.|. ++||.+.... .. .. .. ...+-|-+. .+++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~r~~l~~~L~-~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~ 361 (375)
T PRK11706 283 DDCKHNAHMFYIKLRDLEDRSALINFLK-EAGIMAVFHYIPLHSSPAGERFGRFHGEDRYTTKESERLLRLPLFYNLTDV 361 (375)
T ss_pred CCCceeeEEEEEEECCcCCHHHHHHHHH-HCCCCccccCCccCcchhhHhcCCCCCCChHHHHHHhCcEeccCCCCCCHH
Confidence 12 2356777763 34455665554 4599875432 00 00 00 123444332 3789
Q ss_pred HHHHHHHHHHHhh
Q 045431 420 NVLEACKRFKHLY 432 (433)
Q Consensus 420 ~l~~~l~~l~~~l 432 (433)
+++..++.|++++
T Consensus 362 ~~~~i~~~i~~~~ 374 (375)
T PRK11706 362 EQRTVIDTILEFF 374 (375)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998875
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-17 Score=159.87 Aligned_cols=216 Identities=19% Similarity=0.222 Sum_probs=140.3
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHHHHhcCCCCEEEEeCCCChhhhhhHH-HhCCccccccccccc
Q 045431 104 EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSSV-IMGQTGEFQKDAEKY 182 (433)
Q Consensus 104 ~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l~~l~~~gd~Vl~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~ 182 (433)
.....+|++.+|++. +.+ +.+++.+| ++++.++..++++||+|++++|+|++....+. .+...+
T Consensus 49 ~p~~~~Le~~lA~l~----g~~-~~~~~~sG-~aai~~~~~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G--------- 113 (377)
T PRK07671 49 NPTRAALEELIAVLE----GGH-AGFAFGSG-MAAITAVMMLFSSGDHVILTDDVYGGTYRVMTKVLNRFG--------- 113 (377)
T ss_pred ChHHHHHHHHHHHHh----CCC-ceEEeCCH-HHHHHHHHHHhCCCCEEEECCCccchHHHHHHHHHhcCC---------
Confidence 345788999999986 543 45666666 46777666788999999999999985443332 222222
Q ss_pred ceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCccccc
Q 045431 183 GKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEI 262 (433)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~ 262 (433)
.+++.++..+...+...+ .+++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|+..... .+ + ..
T Consensus 114 ~~v~~v~~~d~~~l~~ai--~~~tklV~le~P~NPtg~~~d---l~~I~~la~~~g~~lvvD~a~~~~~~~-~p--~-~~ 184 (377)
T PRK07671 114 IEHTFVDTSNLEEVEEAI--RPNTKAIYVETPTNPLLKITD---IKKISTIAKEKGLLTIVDNTFMTPYWQ-SP--I-SL 184 (377)
T ss_pred eEEEEECCCCHHHHHHhc--CCCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCCccccC-Ch--h-hh
Confidence 366666543211211111 357899999999999999876 888888899999999999999753222 12 2 12
Q ss_pred CCCCcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHH
Q 045431 263 PGAKEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEV 341 (433)
Q Consensus 263 ~~~~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~ 341 (433)
+..+++.|+||.++.++ .-.|+++++++.+ .+.+...+.......++.....+. + +.+.+..+
T Consensus 185 ----g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l-------~~~~~~~~~~~g~~~~~~~a~l~~---~--~l~tl~~R 248 (377)
T PRK07671 185 ----GADIVLHSATKYLGGHSDVVAGLVVVNSPEL-------AEDLHFVQNSTGGILGPQDSWLLL---R--GLKTLGIR 248 (377)
T ss_pred ----CCeEEEecCcccccCCccceeEEEEeCcHHH-------HHHHHHHHHhhcCCCCHHHHHHHH---c--CcChHHHH
Confidence 12488999999997332 2346666654332 355555444433334443333222 2 23445667
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 045431 342 IGFYKENTDIIVETFNSL 359 (433)
Q Consensus 342 ~~~~~~~~~~l~~~l~~~ 359 (433)
.++..++...+.+.|+++
T Consensus 249 ~~~~~~na~~la~~L~~~ 266 (377)
T PRK07671 249 MEEHETNSRAIAEFLNNH 266 (377)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 778889999999999886
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-18 Score=167.56 Aligned_cols=354 Identities=11% Similarity=0.061 Sum_probs=202.8
Q ss_pred HHHHHHhcCCCCceEEecCCCCC---CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCC--CC
Q 045431 52 RKAAHMLKYPDAEVISLGIGDTT---EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGI--EE 126 (433)
Q Consensus 52 ~~~~~~~~~~~~~~i~l~~g~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~--~~ 126 (433)
..+......+++..||+..|... -..+|.+.+++.+++.+...... ..+ ..+.+..+++.+.+.+.. ..
T Consensus 28 ~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~-~~~-----~~~~~~~lae~l~~~~~~~~~~ 101 (425)
T PRK09264 28 AKGSWLYDEDGKEYIDFFAGAGALNYGHNNPVLKQALIDYLQRDGITHG-LDM-----HTTAKREFLETFEETILKPRGL 101 (425)
T ss_pred eecCEEEeCCCCEeeecccchhhccCCCCCHHHHHHHHHHHHhcccccc-ccc-----CcHHHHHHHHHHHHhhcCCcCC
Confidence 33444445667789999777432 23689999999998875321111 111 124455555555432111 12
Q ss_pred C-cEEE-cCChHHHHHH-H--HHhcCCCCEEEEeCCCChhhhhhHHHh-CCcccccccccccceEEEeecCcc-----CC
Q 045431 127 G-DIFV-SDGAKCDISR-L--QIVFGSNVTMAVQDPSYPAYVDSSVIM-GQTGEFQKDAEKYGKIEYMRCTAE-----NG 195 (433)
Q Consensus 127 ~-~i~~-~~G~~~al~~-l--~~l~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~-----~~ 195 (433)
+ .+++ ++++++|... + ........+|+..+.+|++........ +.......++.....+..+|.... ++
T Consensus 102 ~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 181 (425)
T PRK09264 102 DYKVQFTGPTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDT 181 (425)
T ss_pred CceEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhH
Confidence 2 5655 5788888775 3 222334467888888888865443333 221111112221223444544311 01
Q ss_pred c---ccCCCCC----CCccEEEEcCC-CCcccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCC
Q 045431 196 F---FPDLSTV----ARTDIIFFCSP-NNPTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAK 266 (433)
Q Consensus 196 ~---~~~~~~~----~~~~~i~l~~p-~nPtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~ 266 (433)
+ ...++.. +++.+| +..| +.-.|. +.+.+.+++|.++|++||+++|+||++.++...|........+-.+
T Consensus 182 ~~~l~~~l~~~~~~~~~~aav-i~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v~P 260 (425)
T PRK09264 182 LAYLEKLLEDSSSGVDLPAAV-IVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGITP 260 (425)
T ss_pred HHHHHHHHHhccCCCCceEEE-EEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCCCC
Confidence 0 0001111 234454 4556 555675 5689999999999999999999999998775555332222222224
Q ss_pred cceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHH
Q 045431 267 EVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYK 346 (433)
Q Consensus 267 ~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 346 (433)
| +.++||.++..|+++|++++++++. .+.......+.+.++++..++.+.++..-.+ .+..++++
T Consensus 261 D----i~t~~K~l~~~G~pigav~~~~~i~---------~~~~~~~~~T~~gnp~~~aaa~a~l~~~~~~--~~l~~~~~ 325 (425)
T PRK09264 261 D----IVTLSKSISGYGLPMALVLIKPELD---------VWKPGEHNGTFRGNNLAFVTATAALEEYWSD--DAFEKEVK 325 (425)
T ss_pred C----EEEeccccCCCccceEEEEEchhhh---------ccCCCccCCCCCCCHHHHHHHHHHHHHHHhh--hHHHHHHH
Confidence 4 3377999984399999999987752 1211123344556677776666666311111 23455555
Q ss_pred HHHHHHHHHHhhc----C-CeeecCCCccEEEEECCCCC-hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccCh
Q 045431 347 ENTDIIVETFNSL----G-FKVYGGKNAPYVWVQFPGRS-SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHR 418 (433)
Q Consensus 347 ~~~~~l~~~l~~~----g-~~~~~~~~g~~~~~~~~~~~-~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~ 418 (433)
++.+.+.+.|+++ + +.......|+++|+.++... ...+...++ +.||.+.+...+ ...+|++. ..++
T Consensus 326 ~~g~~l~~~l~~l~~~~~~~~~~vrg~Gl~~~i~l~~~~~~~~l~~~~~-~~Gv~~~~~~~~----~~~lr~~p~l~~t~ 400 (425)
T PRK09264 326 AKGELVRERLEEIAAKYPGLGAEVRGRGMMQGIDFGDGELAGKIAAEAF-ENGLIIETSGPE----DEVVKLLPPLTIDE 400 (425)
T ss_pred HHHHHHHHHHHHHHHhCCCceecceecccEEEEEecChHHHHHHHHHHH-HCCCEEeccCCC----CCEEEEeCCCCCCH
Confidence 6666666555442 2 21111235788899997432 334555555 459999875322 36788883 4689
Q ss_pred hHHHHHHHHHHHhh
Q 045431 419 GNVLEACKRFKHLY 432 (433)
Q Consensus 419 ~~l~~~l~~l~~~l 432 (433)
+++++++++|.+++
T Consensus 401 ~ei~~~~~~l~~~l 414 (425)
T PRK09264 401 EELEEGLDILEEAV 414 (425)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998875
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.9e-18 Score=167.05 Aligned_cols=352 Identities=12% Similarity=0.045 Sum_probs=208.1
Q ss_pred HHHHHHHhcCCCCceEEecCCCC--CC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCC
Q 045431 51 RRKAAHMLKYPDAEVISLGIGDT--TE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEG 127 (433)
Q Consensus 51 ~~~~~~~~~~~~~~~i~l~~g~~--~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~ 127 (433)
+.++......+++..+|+..|.. .+ ..+|.+.+++.+++.+... .....|. .+.+..+|+.+.+..+...+
T Consensus 30 ~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~-~~~~~~~-----~~~~~~la~~l~~~~p~~~~ 103 (423)
T PRK05964 30 RAEGAYLYLADGRELIDAISSWWVATHGHNHPYIDQAIREQLDRLDH-VIFAGFT-----HEPAERLAQRLVALTPGGLD 103 (423)
T ss_pred eccccEEEeCCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHhhCCC-ccccccC-----CHHHHHHHHHHHHhCCCCCC
Confidence 34444455566788999977643 22 3678999999999876421 1111221 24445556665442232346
Q ss_pred cEEEcCChHHHHHHHHHhc---------CCCCEEEEeCCCChhhhhhHHHhCCcccccc-cccccceEEEeecCccCCc-
Q 045431 128 DIFVSDGAKCDISRLQIVF---------GSNVTMAVQDPSYPAYVDSSVIMGQTGEFQK-DAEKYGKIEYMRCTAENGF- 196 (433)
Q Consensus 128 ~i~~~~G~~~al~~l~~l~---------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~- 196 (433)
.+++++++++|+.....+. ....+|+..+-+|++.......+.....+.. +.........++...++..
T Consensus 104 ~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 183 (423)
T PRK05964 104 HVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQ 183 (423)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHH
Confidence 8999999999988632221 1236788889999886544433332221110 0000012233333221100
Q ss_pred --ccCCC----C-CCCccEEEEcCC--CCccccCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCC
Q 045431 197 --FPDLS----T-VARTDIIFFCSP--NNPTGAAA-TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAK 266 (433)
Q Consensus 197 --~~~~~----~-~~~~~~i~l~~p--~nPtG~~~-~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~ 266 (433)
...++ . ..++.+|++ .| ++..|... +.+.+++|.++|++||+++|+||++.++...+...........+
T Consensus 184 ~~~~~l~~~l~~~~~~iaavi~-Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~v~p 262 (423)
T PRK05964 184 ATLDALEALLEKHAGEIAAFIV-EPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLFACEQAGVSP 262 (423)
T ss_pred HHHHHHHHHHHhCCCcEEEEEE-ecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhHHHhcCCCC
Confidence 11111 1 134555554 55 67778766 89999999999999999999999998775555322221222123
Q ss_pred cceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHH------HHhhccCCCcHHHHHHHHHhcCcCChhHHH
Q 045431 267 EVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNR------IVCTCFNGASNISQAGGLACLSPEGFKAVH 339 (433)
Q Consensus 267 ~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~ 339 (433)
| +.+++|.++ .| +++|++++++++. +.+.. ....++.+.++++.+++.+.++.... +
T Consensus 263 D----i~~~~K~l~-gG~~p~~av~~~~~i~--------~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~---~ 326 (423)
T PRK05964 263 D----IMCLSKGLT-GGYLPLAATLCTAEIF--------EAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFED---E 326 (423)
T ss_pred C----eeeeehhhh-cCcccceEEEEcHHHH--------HhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHh---c
Confidence 3 347899997 56 8999999988874 33321 12233445688888888777762211 2
Q ss_pred HHHHHHHHHHHHHHHHHhhc-CCeeec--CCCccEEEEECCCCC----hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEE
Q 045431 340 EVIGFYKENTDIIVETFNSL-GFKVYG--GKNAPYVWVQFPGRS----SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRV 412 (433)
Q Consensus 340 ~~~~~~~~~~~~l~~~l~~~-g~~~~~--~~~g~~~~~~~~~~~----~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi 412 (433)
.+.++.++..+.+.+.|+++ +..... ...|+++.+.+.... ...+...++ ++||.+.+. .+.+|+
T Consensus 327 ~~~~~~~~~g~~l~~~l~~l~~~~~i~~vrg~Gl~~~i~l~~~~~~~~~~~l~~~l~-~~Gv~v~~~-------~~~lR~ 398 (423)
T PRK05964 327 PVLERVAALSAGLAEGLEPFRDLPGVADVRVLGAIGAVELDRPVLERDGPALRAFAL-ERGVLLRPL-------GNTIYL 398 (423)
T ss_pred CHHHHHHHHHHHHHHHHHhhccCCCeEEeecccEEEEEEeccCcchhHHHHHHHHHH-HCCeEEEec-------CCEEEE
Confidence 34455566666666666654 222211 124566667765322 344555555 459999763 147999
Q ss_pred e--eccChhHHHHHHHHHHHhhC
Q 045431 413 S--AFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 413 ~--~~~~~~~l~~~l~~l~~~l~ 433 (433)
+ +..+++|+++++++|+++++
T Consensus 399 ~p~l~~t~edId~~v~~l~~al~ 421 (423)
T PRK05964 399 MPPYIITAEELDRITDAIVEVAD 421 (423)
T ss_pred eCCcccCHHHHHHHHHHHHHHHh
Confidence 9 46799999999999998863
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-17 Score=157.57 Aligned_cols=320 Identities=13% Similarity=0.123 Sum_probs=201.3
Q ss_pred CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCH---HHHHHHHHHHhccCCCC-CCcEEEcCC-hHHHHHH-HHHhcCCC
Q 045431 76 PIPEVITSALAKRSYALSTQEGYSGYGAEQGEK---PLRAAIASTFYKDLGIE-EGDIFVSDG-AKCDISR-LQIVFGSN 149 (433)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~---~lr~~la~~l~~~~~~~-~~~i~~~~G-~~~al~~-l~~l~~~g 149 (433)
..|..+.+++.+.+....+ .+...|....-.+ ++-+.+.+.+.+-++.+ ..+|++++| ++.++++ +..++.+|
T Consensus 2 ~~p~~v~~~~~~~~~~~~~-~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~~~~ 80 (349)
T TIGR01364 2 ALPEEVLEQAQKELLNFNG-TGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLLAEG 80 (349)
T ss_pred CCCHHHHHHHHHHHhCccC-CCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCCC
Confidence 3688899999999886542 4444443333344 44333444444444653 457888877 9999998 68888899
Q ss_pred CEEEEeCCCChhh--hhhHHHhCCcccccccccccceEEEeecCccC----CcccC-CCCCCCccEEEEcCCCCccccCC
Q 045431 150 VTMAVQDPSYPAY--VDSSVIMGQTGEFQKDAEKYGKIEYMRCTAEN----GFFPD-LSTVARTDIIFFCSPNNPTGAAA 222 (433)
Q Consensus 150 d~Vl~~~p~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~i~l~~p~nPtG~~~ 222 (433)
|++++...+..+. ...++..|. +..+..++.. ....+ ++..+++++|.+++..+.||+..
T Consensus 81 ~~~l~i~~G~fg~r~~~~a~~~g~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~th~ETstGv~~ 147 (349)
T TIGR01364 81 KVADYIVTGAWSKKAAKEAKKYGV-------------VNVVASGKEGNYTKIPDPSTWEISEDAAYVHYCANETIHGVEF 147 (349)
T ss_pred CeEEEEECCHHHHHHHHHHHHhCC-------------cEEEeccccCCCCCCCCHHhcCCCCCCCEEEEcCCCCcccEec
Confidence 9998888777664 344455552 3333322111 11111 23345889999999999999976
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcc
Q 045431 223 TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFP 302 (433)
Q Consensus 223 ~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~ 302 (433)
+ ++++.+++++++|.+.+-. ..+..+..+ + +++.|..|.+|.+| +|+++++++.+.+..+.
T Consensus 148 ~--------~l~~~~~~l~iVDavss~g---~~~id~~~~----d--~~~~ssqK~lgP~G--lg~l~~s~~~~~~~~~~ 208 (349)
T TIGR01364 148 R--------ELPDVKNAPLVADMSSNIL---SRPIDVSKF----G--LIYAGAQKNIGPAG--LTVVIVRKDLLGRASRI 208 (349)
T ss_pred c--------eecccCCCeEEEEcccccc---CccCCHHHc----c--EEEEecccccCCCc--eEEEEECHHHHhhcccC
Confidence 5 5566789999999998832 123434332 2 88889999999777 89999999886432111
Q ss_pred hhH--HHHHHH--hhccCCCcHHHHHHHHHhcCcCChh-HHHHHHHHHHHHHHHHHHHHhhc-CCeeec--C--CCccEE
Q 045431 303 VAK--DFNRIV--CTCFNGASNISQAGGLACLSPEGFK-AVHEVIGFYKENTDIIVETFNSL-GFKVYG--G--KNAPYV 372 (433)
Q Consensus 303 ~~~--~~~~~~--~~~~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~--~--~~g~~~ 372 (433)
... ++.... .....+++.....+..++++..... .++++.++.++..+++++.|+++ |+.... + .....+
T Consensus 209 ~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~ 288 (349)
T TIGR01364 209 TPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNV 288 (349)
T ss_pred CCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEE
Confidence 000 111111 1112344444444444444422223 36899999999999999999999 564432 1 122446
Q ss_pred EEECCCC-ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhhC
Q 045431 373 WVQFPGR-SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 373 ~~~~~~~-~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l~ 433 (433)
.+.+++. ...++...+ .+.|+.+.+|.. ..+.||+|+ +++.+|++.+++.|+++++
T Consensus 289 sf~~~~~~~~~~~~~~~-~~~Gi~~~~~~~----~~g~vRvS~~~~nt~edid~l~~al~~~~~ 347 (349)
T TIGR01364 289 VFTLGNEELEKRFLKEA-EERGLVSLKGHR----SVGGMRASIYNAMPLEGVQALVDFMKEFQK 347 (349)
T ss_pred EEecCChhHhHHHHHHH-HHCCCcccCCcc----ccCeeEEECcCCCCHHHHHHHHHHHHHHHH
Confidence 6676643 223444444 456997777654 236899995 5689999999999998753
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.4e-19 Score=163.47 Aligned_cols=165 Identities=15% Similarity=0.183 Sum_probs=119.8
Q ss_pred CCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccc
Q 045431 103 AEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEK 181 (433)
Q Consensus 103 ~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~ 181 (433)
|..-..++++.+|+++ +.+ +-+++|+|+++++.+ +.+++++||+|++++|+|.++...+...|.
T Consensus 57 ~~g~i~~~~~~~A~~~----ga~-~~~~~~~Gst~a~~~~l~al~~~gd~Vlv~~~~h~s~~~~~~~~g~---------- 121 (294)
T cd00615 57 PTGPIKEAQELAARAF----GAK-HTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVLSGA---------- 121 (294)
T ss_pred CChHHHHHHHHHHHHh----CCC-CEEEEcCcHHHHHHHHHHHcCCCCCEEEEeCCchHHHHHHHHHCCC----------
Confidence 3444778889999987 643 445569999999886 688899999999999999999888888883
Q ss_pred cceEEEeecCccCCc----ccC---CC----CCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccc-
Q 045431 182 YGKIEYMRCTAENGF----FPD---LS----TVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYAL- 249 (433)
Q Consensus 182 ~~~~~~~~~~~~~~~----~~~---~~----~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~- 249 (433)
.++.++.+.+.++ ..+ ++ +.++++++++++| ||||.+++ +++|+++|+++|+++|+|++|+.
T Consensus 122 --~~~~v~~~~~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p-~~~G~~~d---l~~I~~~~~~~g~~livDeA~~~~ 195 (294)
T cd00615 122 --VPVYLKPERNPYYGIAGGIPPETFKKALIEHPDAKAAVITNP-TYYGICYN---LRKIVEEAHHRGLPVLVDEAHGAH 195 (294)
T ss_pred --EEEEecCccCcccCcCCCCCHHHHHHHHHhCCCceEEEEECC-CCCCEecC---HHHHHHHHHhcCCeEEEECcchhh
Confidence 5666655433211 112 11 1257899999999 78999998 78999999999999999999975
Q ss_pred cccCCC-CCcccccCCCCcceEEEeccccccccccccee-eeecccc
Q 045431 250 YISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLG-WTVIPKE 294 (433)
Q Consensus 250 ~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G-~l~~~~~ 294 (433)
+.+.+. +.+... .+..+++.|++|++ +|++.| ++..+..
T Consensus 196 ~~~~~~~~~~~~~----~~~div~~S~hK~l--~g~~~~~~l~~~~~ 236 (294)
T cd00615 196 FRFHPILPSSAAM----AGADIVVQSTHKTL--PALTQGSMIHVKGD 236 (294)
T ss_pred hccCcccCcchhh----cCCcEEEEchhccc--chHhHHHHHHhCCC
Confidence 334332 211111 24569999999986 778765 4555554
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-17 Score=161.50 Aligned_cols=335 Identities=12% Similarity=0.050 Sum_probs=190.2
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHH-hhcccCCCCCCC-CCCCCCHHHHH----HHHHHHhccCCCCCCcEEEcCChHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRS-YALSTQEGYSGY-GAEQGEKPLRA----AIASTFYKDLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~Y-~~~~g~~~lr~----~la~~l~~~~~~~~~~i~~~~G~~~ 137 (433)
..+++-.+++- .+|.+.+++...+ .+++.......+ +-.....+|.+ .+++++ +.+ ..++.+++++.
T Consensus 29 ~~~~l~~sen~--~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~----g~~-~alv~~~SG~~ 101 (416)
T PRK13034 29 DHLELIASENF--TSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLF----GCD-YANVQPHSGSQ 101 (416)
T ss_pred cCeeecccccC--CCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHh----CCC-ceEEecCCcHH
Confidence 35776655543 5888898988885 555322222222 11234556666 677765 544 33344555566
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCChhh-hhhHHHhCCcccccccccccceEEEeecCccCC-cccC-CCC---CCCccEEE
Q 045431 138 DISR-LQIVFGSNVTMAVQDPSYPAY-VDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENG-FFPD-LST---VARTDIIF 210 (433)
Q Consensus 138 al~~-l~~l~~~gd~Vl~~~p~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~---~~~~~~i~ 210 (433)
|+.+ +.++++|||+|+++..+|.+. ....+...... ......++++.... .+.+ +++ ..++++|+
T Consensus 102 A~~~~l~al~~~GD~Vl~~~~~~~~~~~~g~~~~~~~~--------~~~~~~~~~~~~~~~~d~~~le~~l~~~~~klVi 173 (416)
T PRK13034 102 ANGAVYLALLKPGDTILGMSLSHGGHLTHGAKVSLSGK--------WYNAVQYGVDRLTGLIDYDEVEELAKEHKPKLII 173 (416)
T ss_pred HHHHHHHHhcCCCCEEEEcCccceeeeecCCcceeccc--------eeeeEEcccccccCCcCHHHHHHHHhhcCCeEEE
Confidence 6654 788899999999999999762 22111100000 01112333322111 1111 111 23578877
Q ss_pred EcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeee
Q 045431 211 FCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTV 290 (433)
Q Consensus 211 l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~ 290 (433)
+.++. +|+..+ +.+|.++|++||+++|+|++|+....... .....+ .+..++++|++|+++.+. -|+++
T Consensus 174 ~~~~~--~g~~~d---l~~l~~la~~~g~~livD~Aha~G~~~~g-~~~~~~---~~~Di~~~s~~K~l~g~~--GG~v~ 242 (416)
T PRK13034 174 AGFSA--YPRELD---FARFREIADEVGALLMVDMAHIAGLVAAG-EHPNPF---PHAHVVTTTTHKTLRGPR--GGMIL 242 (416)
T ss_pred ECCCc--cccccC---HHHHHHHHHHcCCEEEEeCcccccCcccC-CCCCCC---CCceEEEEeCcccCCCCC--CeEEE
Confidence 65554 466555 77888889999999999999985333221 111111 123488999999994222 37777
Q ss_pred ccccccccCCcchhHHHHHHHhhcc-CCCcHHHHHHHH-HhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecC-C
Q 045431 291 IPKELLFSDGFPVAKDFNRIVCTCF-NGASNISQAGGL-ACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGG-K 367 (433)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~~-~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~ 367 (433)
++++.+ ...++....... ....+...+++. ++++... ....+.++++.++.+++.+.|++.|+.+..+ .
T Consensus 243 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~aa~~~al~~~~~-~~~~~~~~~l~~~a~~l~~~L~~~G~~~~~~~~ 314 (416)
T PRK13034 243 TNDEEI-------AKKINSAVFPGLQGGPLMHVIAAKAVAFGEALQ-PEFKTYAKQVIANAQALAEVLKERGYDLVSGGT 314 (416)
T ss_pred ECcHHH-------HHHHHhhcCCcccCCccHHHHHHHHHHHHHHhC-hhHHHHHHHHHHHHHHHHHHHHHcCCEeccCCC
Confidence 766553 233332221111 112222222222 2222111 1224567899999999999999889988643 4
Q ss_pred CccEEEEECCC-CChHHHHHHHHHcCCeEecC----CCCCCCCCCCeEEEee------ccChhHHHHHHHHHHHhh
Q 045431 368 NAPYVWVQFPG-RSSWDVFSEILEKTHVVTTP----GSGFGPGGEGFIRVSA------FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 368 ~g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~----g~~f~~~~~~~iRi~~------~~~~~~l~~~l~~l~~~l 432 (433)
.+..+++.+.. ......+...++++||.+.+ +..-.+..+..+|++. ..+++|++++++.|++++
T Consensus 315 ~t~i~~v~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~ 390 (416)
T PRK13034 315 DNHLLLVDLRPKGLSGKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFREIANWILDVL 390 (416)
T ss_pred CCcEEEEEcCCCCCCHHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 56777787763 22434444445666999964 2110122356799994 236899999999998875
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-17 Score=158.29 Aligned_cols=277 Identities=17% Similarity=0.177 Sum_probs=177.7
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHh-cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccc
Q 045431 104 EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIV-FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEK 181 (433)
Q Consensus 104 ~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l-~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~ 181 (433)
.....++++.+++++ +. +++++++|+++++.+ +..+ +++||+|+++.++|..+...+...|
T Consensus 17 ~~~~~~~~~~la~~~----~~--~~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~~~~~g----------- 79 (352)
T cd00616 17 GPKVREFEKAFAEYL----GV--KYAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANAILLLG----------- 79 (352)
T ss_pred CHHHHHHHHHHHHHh----CC--CeEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHHHcC-----------
Confidence 346889999999997 53 467778888889887 5556 5899999999999999988888888
Q ss_pred cceEEEeecCccCCcccCC---CC--CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCC
Q 045431 182 YGKIEYMRCTAENGFFPDL---ST--VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNP 256 (433)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~---~~--~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~ 256 (433)
.+++.++.+.+ .+..++ +. .+++++|+++ ||+|...+ +++|.++|+++|+++|+|++|+...... .
T Consensus 80 -~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~v~~~---~~~G~~~~---~~~i~~l~~~~~i~li~D~a~~~g~~~~-~ 150 (352)
T cd00616 80 -ATPVFVDIDPD-TYNIDPELIEAAITPRTKAIIPV---HLYGNPAD---MDAIMAIAKRHGLPVIEDAAQALGATYK-G 150 (352)
T ss_pred -CeEEEEecCCC-cCCcCHHHHHHhcCcCCeEEEEE---CCCCCcCC---HHHHHHHHHHcCCeEEEECCCCCCCeEC-C
Confidence 47777777542 222222 21 3578888875 46898877 7888888999999999999998432211 1
Q ss_pred CcccccCCCCcceEEEeccc--ccccccccceeeeeccc-cccccCCcchhHHHHHHHhhc---------------cCCC
Q 045431 257 RSIFEIPGAKEVAIETSSFS--KYAGFTGVRLGWTVIPK-ELLFSDGFPVAKDFNRIVCTC---------------FNGA 318 (433)
Q Consensus 257 ~~~~~~~~~~~~vi~i~S~s--K~~~~~G~r~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~ 318 (433)
..+... . .+.+.|++ |.++ +.+.|++++++ +++ +.+....... ....
T Consensus 151 ~~~~~~---~--d~~~~S~~~~K~~~--~~~gg~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (352)
T cd00616 151 RKVGTF---G--DAGAFSFHPTKNLT--TGEGGAVVTNDEELA--------ERARLLRNHGRDRDRFKYEHEILGYNYRL 215 (352)
T ss_pred EEcccC---c--ceeEEcCCCCCCCc--ccCceEEEECCHHHH--------HHHHHHHHcCCCCCCCccccceeeeccCc
Confidence 111111 1 25666766 9884 33468888765 442 3333222111 1112
Q ss_pred cHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCC-----ccEEEEECC---CCChHHHHHHHH
Q 045431 319 SNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKN-----APYVWVQFP---GRSSWDVFSEIL 389 (433)
Q Consensus 319 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~-----g~~~~~~~~---~~~~~~~~~~l~ 389 (433)
+.+...++... ...+++..++.+++.+++.+.|.++ |+++..+.. ...+.+.++ +.+..++.+.|.
T Consensus 216 ~~~~aa~~~~~-----l~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~ 290 (352)
T cd00616 216 SEIQAAIGLAQ-----LEKLDEIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPEAGESRDELIEALK 290 (352)
T ss_pred CHHHHHHHHHH-----HHhhHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCcCCCCHHHHHHHHH
Confidence 23322222221 2334667777888899999999986 777654322 234455555 345666776665
Q ss_pred HcCCeEecCCCCCCCC----------------C-------CCeEEEee--ccChhHHHHHHHHHH
Q 045431 390 EKTHVVTTPGSGFGPG----------------G-------EGFIRVSA--FGHRGNVLEACKRFK 429 (433)
Q Consensus 390 ~~~gi~v~~g~~f~~~----------------~-------~~~iRi~~--~~~~~~l~~~l~~l~ 429 (433)
++||.+.. .|.+. . .+.+|+++ +.+++|++..++.|+
T Consensus 291 -~~gI~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 291 -EAGIETRV--HYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred -HCCCCeee--ecCccccCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence 45996642 22110 0 25799995 568999999998874
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.81 E-value=6e-18 Score=161.08 Aligned_cols=317 Identities=14% Similarity=0.146 Sum_probs=194.0
Q ss_pred CCCChHHHHHHHHHHHhhcccCCCCCCCCCC-------CCCHHHHHHHHHHHhccCCC-CCCcEEEcCC-hHHHHHH-HH
Q 045431 74 TEPIPEVITSALAKRSYALSTQEGYSGYGAE-------QGEKPLRAAIASTFYKDLGI-EEGDIFVSDG-AKCDISR-LQ 143 (433)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~-------~g~~~lr~~la~~l~~~~~~-~~~~i~~~~G-~~~al~~-l~ 143 (433)
+.+.|+.+.+++.+.+..+. ..+...|... .-..+.|+.+++++ ++ ++++|++|+| +|+++++ +.
T Consensus 7 p~~~p~~V~~a~~~~~~~~~-~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~----~~~~~~~vvf~~gs~T~a~~~~~~ 81 (355)
T cd00611 7 PAALPEEVLEQAQKELLDFN-GLGMSVMEMSHRSKDFEAIVNEAESDLRELL----NIPDNYKVLFLQGGATGQFAAVPL 81 (355)
T ss_pred CCCCCHHHHHHHHHHHhhcc-cCCccccccCCCCHHHHHHHHHHHHHHHHHh----CCCCCceEEEEcCCchHHHHHHHH
Confidence 35689999999999886543 2333334332 22456777777776 76 5678999988 9999997 57
Q ss_pred HhcC---CCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCc-c-cC---CCCCCCccEEEEcCCC
Q 045431 144 IVFG---SNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGF-F-PD---LSTVARTDIIFFCSPN 215 (433)
Q Consensus 144 ~l~~---~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~---~~~~~~~~~i~l~~p~ 215 (433)
.++. +||.|++ .|.........+..| .++..++.+.++.+ . ++ .+..+++++|.+++.+
T Consensus 82 ~l~~~~~~~~~i~~-g~~~~~~~~~a~~~g------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~lV~~~h~~ 148 (355)
T cd00611 82 NLLGDKGTADYVVT-GAWSAKAAKEAKRYG------------GVVVIVAAKEEGKYTKIPDVETWDLAPDAAYVHYCSNE 148 (355)
T ss_pred hcCCCCCeEEEEEC-CHHHHHHHHHHHhcC------------CCcEEEecccccCCCCCCCHhhcCCCCCCCEEEEeCCc
Confidence 7776 5555543 222222233445555 35666665432222 1 22 1224689999999999
Q ss_pred CccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccc
Q 045431 216 NPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKEL 295 (433)
Q Consensus 216 nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~ 295 (433)
|.||+.++ ++++.||+++++|.+.+... .+..+..+ + +.+.|..|.+|.+| +|+++++++.
T Consensus 149 t~tG~~~~--------~i~~~~g~~~~VDa~qs~g~---~~idv~~~----~--~~~ss~~K~lGP~G--~g~l~~~~~~ 209 (355)
T cd00611 149 TIHGVEFD--------EVPDTGGVPLVADMSSNILS---RPIDVSKF----G--VIYAGAQKNLGPAG--VTVVIVRKDL 209 (355)
T ss_pred ccccEEcc--------eecccCCCeEEEEccccccC---CCCCHHHh----C--EEEeecccccCCCc--eEEEEECHHH
Confidence 99999743 33445999999999988421 13444332 2 45666899998777 8999999988
Q ss_pred cccCCcchhH--HHHH-HHhhc-cCCCcHHHHHHHHHhcCcCChh-HHHHHHHHHHHHHHHHHHHHhhc-CCe-ee-cC-
Q 045431 296 LFSDGFPVAK--DFNR-IVCTC-FNGASNISQAGGLACLSPEGFK-AVHEVIGFYKENTDIIVETFNSL-GFK-VY-GG- 366 (433)
Q Consensus 296 ~~~~~~~~~~--~~~~-~~~~~-~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~-g~~-~~-~~- 366 (433)
+.+..+.... .+.. ..... ..+++.....+..++++-.... .++.+.++.++..+++.+.|+++ |+. .. .+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~ 289 (355)
T cd00611 210 LGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKR 289 (355)
T ss_pred HhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCccccccCCCHH
Confidence 6431111000 0111 01111 2334433444333443311112 36888999999999999999998 863 21 11
Q ss_pred -CCccEEEEECCCC-ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 367 -KNAPYVWVQFPGR-SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 367 -~~g~~~~~~~~~~-~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
..+..+.+.+++. ...++...+ .+.|+.+.+|.. ..+.+|+|+ +++.+|++.+++.|+++.
T Consensus 290 ~rs~~vvsf~~~~~~l~~~~~~~~-~r~G~~~~~~~~----~~g~vR~S~~~~nt~edi~~l~~al~~~~ 354 (355)
T cd00611 290 ARSRMNVPFRLGKEELEKEFLKEA-EAAGMIGLKGHR----SVGGIRASIYNALSLEGVQALADFMKEFQ 354 (355)
T ss_pred HcCceEEEEEcCChhhhHHHHHHH-HHCCCcccCCCc----ccCeEEEEccCCCCHHHHHHHHHHHHHHh
Confidence 2224466676653 123333444 445998666543 236899996 559999999999999864
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-17 Score=156.85 Aligned_cols=354 Identities=10% Similarity=0.088 Sum_probs=227.1
Q ss_pred HHHHHHHhcCCCCceEEecCCCC--C-CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCC-CC
Q 045431 51 RRKAAHMLKYPDAEVISLGIGDT--T-EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGI-EE 126 (433)
Q Consensus 51 ~~~~~~~~~~~~~~~i~l~~g~~--~-~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~-~~ 126 (433)
+..+....+.+++..|||..|.. . -..+|.+.+++.+++.+.. +..+.|.. .+-..++|+.|....+. ..
T Consensus 44 ra~G~~l~DvdG~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~~~--h~~~~~~~----~e~~v~~ae~L~~~~p~~~~ 117 (447)
T COG0160 44 RAEGAYLYDVDGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLN--HTHTRDLY----YEPYVELAEKLTALAPGSGL 117 (447)
T ss_pred ecccCEEEeCCCCEEEEcccCcchhccCCCCHHHHHHHHHHHHHhh--cccCCccc----chhHHHHHHHHHHhCCcccC
Confidence 34444556677888999988543 3 3478999999999988754 12223322 24455555555543344 46
Q ss_pred CcEEEcCChHHHHHH-H--HHhcCCCCEEEEeCCCChhhh-hhHHHhCCcccc-cccccccceEEEeecCccC--Ccc--
Q 045431 127 GDIFVSDGAKCDISR-L--QIVFGSNVTMAVQDPSYPAYV-DSSVIMGQTGEF-QKDAEKYGKIEYMRCTAEN--GFF-- 197 (433)
Q Consensus 127 ~~i~~~~G~~~al~~-l--~~l~~~gd~Vl~~~p~~~~~~-~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~--~~~-- 197 (433)
..+++++++++|.++ + ......+..|+...-.|++-. ......|..... ..++.....+..+|....- .+.
T Consensus 118 ~~~~f~~sGaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~ 197 (447)
T COG0160 118 KKVFFGNSGAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIG 197 (447)
T ss_pred CeEEecCCcHHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCc
Confidence 789999999999986 3 223344556777777776644 444444433221 1122222235555553211 000
Q ss_pred -cC--------CCC--------CCCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCc
Q 045431 198 -PD--------LST--------VARTDIIFFCSP-NNPTGAA-ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRS 258 (433)
Q Consensus 198 -~~--------~~~--------~~~~~~i~l~~p-~nPtG~~-~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~ 258 (433)
.+ ++. ..++.++++ .| +.-.|.. .|.+.++++.++|++||+++|.||++.++...|....
T Consensus 198 ~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~-EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~fa 276 (447)
T COG0160 198 GEECGDDALEYIERALFDLEVGPEEVAAIII-EPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFA 276 (447)
T ss_pred hhhhhHHHHHHHHHHHHhhcCCCCceeEEEE-ecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccchh
Confidence 00 110 124455554 55 7777754 4677889999999999999999999999988886555
Q ss_pred ccccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHH
Q 045431 259 IFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAV 338 (433)
Q Consensus 259 ~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~ 338 (433)
+-...-.+| +| ++||.+| .|+.+|.++.++++. + +.......+++.++++.+++.+.|+....
T Consensus 277 ~E~~gv~PD-iv---t~aK~ig-~G~Pl~avv~r~ei~--------~-~~~g~~~~Tf~GNpva~Aaa~AvL~vie~--- 339 (447)
T COG0160 277 FEHFGVEPD-IV---TLAKSLG-GGLPLSAVVGRAEIM--------D-WPPGGHGGTFGGNPVACAAALAVLDVIEE--- 339 (447)
T ss_pred hhhcCCCCC-EE---Eeccccc-CCCceeEEeccHHhc--------c-cCCcccCCCCCcCHHHHHHHHHHHHHHHH---
Confidence 544433344 33 7899998 799999999999985 3 44445555678899999999998873222
Q ss_pred HHHHHHHHHHHHHHHHHHhhc--CCeeecC--CCccEEEEECCC------CC---hHHHHHHHHHcCCeEecCCCCCCCC
Q 045431 339 HEVIGFYKENTDIIVETFNSL--GFKVYGG--KNAPYVWVQFPG------RS---SWDVFSEILEKTHVVTTPGSGFGPG 405 (433)
Q Consensus 339 ~~~~~~~~~~~~~l~~~l~~~--g~~~~~~--~~g~~~~~~~~~------~~---~~~~~~~l~~~~gi~v~~g~~f~~~ 405 (433)
+++.++.++.-+++.+.|.++ ....++. --|+++-+.+.. .+ ...+..+++++ |+.+..+..+
T Consensus 340 e~L~~~a~~~G~~l~~~L~~l~~~~~~IgdVRG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~~-Glil~~~G~~--- 415 (447)
T COG0160 340 ENLLERAAELGEYLRDRLEELQEKHPLIGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAFER-GLLLLTCGPH--- 415 (447)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhcCceecccccceEEEEEEecCCCCCCCCHHHHHHHHHHHHHc-CCEEeccCCC---
Confidence 356666777777777777665 2323222 145777777641 11 23455565554 9888664332
Q ss_pred CCCeEEEe--eccChhHHHHHHHHHHHhhC
Q 045431 406 GEGFIRVS--AFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 406 ~~~~iRi~--~~~~~~~l~~~l~~l~~~l~ 433 (433)
.+.+||. +..++++++++++.|.++++
T Consensus 416 -~nviRi~PPL~is~e~~d~~l~il~~al~ 444 (447)
T COG0160 416 -GNVLRILPPLTISDEELDEGLDILEEALK 444 (447)
T ss_pred -CcEEEEeCCcccCHHHHHHHHHHHHHHHH
Confidence 4789999 57799999999999998763
|
|
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-17 Score=154.45 Aligned_cols=205 Identities=19% Similarity=0.243 Sum_probs=157.7
Q ss_pred CCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCC--CCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHH
Q 045431 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYS--GYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCD 138 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~a 138 (433)
.+...+.+..+... |.++.|++++.+.+.+....+... .|..-.+..+-|+.+|+++ ++++.+|++|+|+|++
T Consensus 40 ~~~~~vyld~~at~-p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklI----nAd~~dIiFts~ATEs 114 (428)
T KOG1549|consen 40 HGTRPVYLDNQATG-PMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLI----NADPSDIVFTSGATES 114 (428)
T ss_pred CCCccEEEecCcCC-CCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHh----CCCCCcEEEeCCchHH
Confidence 34467777777653 789999999999887654323322 3333445788999999997 8999889999999999
Q ss_pred HHH-HHHh-cCCCC----EEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCcc
Q 045431 139 ISR-LQIV-FGSNV----TMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTD 207 (433)
Q Consensus 139 l~~-l~~l-~~~gd----~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 207 (433)
+++ +..+ ...+| +|++..-.|+.....++.+..+|. .+.++|++.++ ..+++. .++|+
T Consensus 115 ~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~---------~Vt~lpv~~~~--~~d~~~~~~~i~~~T~ 183 (428)
T KOG1549|consen 115 NNLVLKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQEEGL---------EVTYLPVEDSG--LVDISKLREAIRSKTR 183 (428)
T ss_pred HHHHHHHhhccccccccceEEEecccCcchhHHHHHHHhcCe---------EEEEeccCccc--cccHHHHHHhcCCCce
Confidence 998 5444 34566 899999999999888888776663 89999998433 233322 47999
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccccccee
Q 045431 208 IIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLG 287 (433)
Q Consensus 208 ~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G 287 (433)
++.+.+-+|-+|+++| +++|+++|+++++.+++|.+++-. .-+..+.++.. .++..|.+|++|++| +|
T Consensus 184 lv~I~~Vnn~~gv~~P---v~EI~~icr~~~v~v~~DaAQavG---~i~vDV~eln~----D~~s~s~HK~ygp~~--iG 251 (428)
T KOG1549|consen 184 LVSIMHVNNEIGVLQP---VKEIVKICREEGVQVHVDAAQAVG---KIPVDVQELNA----DFLSISAHKIYGPPG--IG 251 (428)
T ss_pred EEEEEecccCcccccc---HHHHHHHhCcCCcEEEeehhhhcC---CccccHHHcCc----hheeeecccccCCCc--ce
Confidence 9999899999999999 889999999999999999999831 11455555532 277788999999999 99
Q ss_pred eeeccc
Q 045431 288 WTVIPK 293 (433)
Q Consensus 288 ~l~~~~ 293 (433)
++++++
T Consensus 252 aLYvr~ 257 (428)
T KOG1549|consen 252 ALYVRR 257 (428)
T ss_pred EEEEcc
Confidence 999986
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-17 Score=161.04 Aligned_cols=158 Identities=16% Similarity=0.239 Sum_probs=115.7
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhH----HHhCCccccccc
Q 045431 104 EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSS----VIMGQTGEFQKD 178 (433)
Q Consensus 104 ~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~~~~~ 178 (433)
..-...|.+.+|++. + .+..++++|+++++.+ +..++++||+|+++.+.|++....+ +..|
T Consensus 63 ~p~~~~Le~~lA~le----g--~~~al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~G-------- 128 (431)
T PRK08248 63 NPTTDVFEKRIAALE----G--GIGALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLG-------- 128 (431)
T ss_pred CchHHHHHHHHHHHh----C--CCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhCC--------
Confidence 345678888888885 4 3466778888888886 6788999999999999997654433 3445
Q ss_pred ccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCc
Q 045431 179 AEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRS 258 (433)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~ 258 (433)
.+++.++..+...+...+ .+++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+.- .. ..+
T Consensus 129 ----v~v~~vd~~d~e~l~~ai--~~~tklV~l~sp~NPtG~v~d---i~~I~~la~~~gi~vIvD~t~a~~-~~--~~p 196 (431)
T PRK08248 129 ----ITVKFVDPSDPENFEAAI--TDKTKALFAETIGNPKGDVLD---IEAVAAIAHEHGIPLIVDNTFASP-YL--LRP 196 (431)
T ss_pred ----EEEEEECCCCHHHHHHhc--CCCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEeCCCCcc-cc--CCh
Confidence 367777654222222112 257899999999999999998 678899999999999999998721 11 122
Q ss_pred ccccCCCCcceEEEecccccccccccceeeeecc
Q 045431 259 IFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIP 292 (433)
Q Consensus 259 ~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~ 292 (433)
+ . .+..+++.|++|.+|.+|.++|++++.
T Consensus 197 l-~----~gaDivv~S~tK~lgg~g~~~Gg~v~~ 225 (431)
T PRK08248 197 I-E----HGADIVVHSATKFIGGHGTSIGGVIVD 225 (431)
T ss_pred h-H----cCCCEEEEcCccccCCCCCceEEEEEe
Confidence 2 1 233488999999999899999987764
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-17 Score=163.24 Aligned_cols=352 Identities=10% Similarity=0.059 Sum_probs=207.0
Q ss_pred HHHHHHhcCCCCceEEecCCCCC---CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCC--C
Q 045431 52 RKAAHMLKYPDAEVISLGIGDTT---EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIE--E 126 (433)
Q Consensus 52 ~~~~~~~~~~~~~~i~l~~g~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~--~ 126 (433)
.++......+++..||+..|... -..+|.+.+++.+++..... ....+.+ .+.+..+|+.|....+.. .
T Consensus 28 ~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~--~~~~~~~----~~~~~~lae~L~~~~p~~~~~ 101 (442)
T TIGR00709 28 AQGCWVTDVEGKEYLDFLAGAGTLALGHNHPNMKQKILDYLQSGLP--LHTLDLT----TPLKDAFIEALLNIIPKRKMD 101 (442)
T ss_pred ccccEEEeCCCCEEEEccccHhhhcCCCCCHHHHHHHHHHHHhccC--ccccccC----cHHHHHHHHHHHHhCCCcCCC
Confidence 44444555677889999777532 24688999999999875211 1111112 345555566554322211 1
Q ss_pred Cc-EEEcCChHHHHHH-H--HHhcCCCCEEEEeCCCChhhhhhHHHhCC-cccccccccccceEEEeecCccCC------
Q 045431 127 GD-IFVSDGAKCDISR-L--QIVFGSNVTMAVQDPSYPAYVDSSVIMGQ-TGEFQKDAEKYGKIEYMRCTAENG------ 195 (433)
Q Consensus 127 ~~-i~~~~G~~~al~~-l--~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~------ 195 (433)
.. +++++++++|... + ........+|+....+|++.......... ......++.....+..++......
T Consensus 102 ~~~~f~~~sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (442)
T TIGR00709 102 YKLQFPGPSGADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIG 181 (442)
T ss_pred ccEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccCC
Confidence 34 4566788888875 3 12233446788899999887654443321 110000111111222222211000
Q ss_pred --------------cccCCCC-CCCccEEEEcCC-CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcc
Q 045431 196 --------------FFPDLST-VARTDIIFFCSP-NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSI 259 (433)
Q Consensus 196 --------------~~~~~~~-~~~~~~i~l~~p-~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~ 259 (433)
...+++. ..++.++++... .|+.....+++.+++|.++|++||+++|.||++.+|...+.....
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~ 261 (442)
T TIGR00709 182 GEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAF 261 (442)
T ss_pred chhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHH
Confidence 0000111 135566665533 444445589999999999999999999999999988776654443
Q ss_pred cccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHH
Q 045431 260 FEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVH 339 (433)
Q Consensus 260 ~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~ 339 (433)
..+...+| ++ ++||.++ .|+++|+++++++. +.+......++.+.++++++++.+.|+.... +
T Consensus 262 ~~~gv~PD-iv---~~gK~l~-~G~Pigav~~~~~~---------~~~~~~~~~~T~~gnpla~aaa~a~L~~i~~---~ 324 (442)
T TIGR00709 262 EHAGIEPD-FV---VMSKAVG-GGLPLAVLLIAPEF---------DAWQPAGHTGTFRGNQLAMVTGTEALNYWKD---D 324 (442)
T ss_pred HHcCCCCc-EE---EEccccc-CCcccEEEEEchHH---------hccCCCcCCCCCCcCHHHHHHHHHHHHHHHh---c
Confidence 33433344 33 3899998 69999999998773 1111122345667899999999998863222 3
Q ss_pred HHHHHHHHHHHHHHHHHhhc----CC-eeecCCCccEEEEECCCCC---------------hHHHHHHHHHcCCeEecCC
Q 045431 340 EVIGFYKENTDIIVETFNSL----GF-KVYGGKNAPYVWVQFPGRS---------------SWDVFSEILEKTHVVTTPG 399 (433)
Q Consensus 340 ~~~~~~~~~~~~l~~~l~~~----g~-~~~~~~~g~~~~~~~~~~~---------------~~~~~~~l~~~~gi~v~~g 399 (433)
.+.+.++++.+++.+.|+++ ++ .-+. ..|.++.+.+.... ...+...+ .++||.+.+.
T Consensus 325 ~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vr-G~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Gvl~~~~ 402 (442)
T TIGR00709 325 NLAQNAQERGERITSFLDDMIKEHPCIGNVR-GRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGAC-FENGLLLETG 402 (442)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCeeeee-ccceEEEEEEccCcccccccccCCcchHHHHHHHHHH-HHCCeEEeec
Confidence 44556677777777777653 21 1122 24666666663110 12333344 4569999764
Q ss_pred CCCCCCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 400 SGFGPGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 400 ~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
.. ..+.+|+. +..+++++++++++|.+++
T Consensus 403 ~~----~~~~l~~~Ppl~it~~ei~~~~~~l~~~l 433 (442)
T TIGR00709 403 GR----EGEVFRLLCPITIDQEECEEGISRFKQAV 433 (442)
T ss_pred CC----CCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 21 23678988 5679999999999998876
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.5e-17 Score=157.11 Aligned_cols=222 Identities=16% Similarity=0.159 Sum_probs=141.1
Q ss_pred CCCCCCCCH---HHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhh---HHHhCCc
Q 045431 100 GYGAEQGEK---PLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDS---SVIMGQT 172 (433)
Q Consensus 100 ~Y~~~~g~~---~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~---~~~~g~~ 172 (433)
.|+. .|.+ .|+++++++. +.. ..|++++| ++++.. +..++++||+|+++++.|++.... +...|
T Consensus 40 ~Y~r-~g~p~~~~lE~~la~le----g~~-~~v~~ssG-~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~~l~~~G-- 110 (397)
T PRK05939 40 TYAR-QGTPTTAALEAKITKME----GGV-GTVCFATG-MAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTLRGLG-- 110 (397)
T ss_pred CcCC-CCCHHHHHHHHHHHHHh----CCC-eEEEeCCH-HHHHHHHHHHHcCCCCEEEECCCccccHHHHHHHHHhcC--
Confidence 4533 3566 8999999985 433 45666665 778876 678899999999999999875443 33445
Q ss_pred ccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEecccccc-c
Q 045431 173 GEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALY-I 251 (433)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~-~ 251 (433)
.+++.++..+...+...+ .+++++|++++|+||||.+. ++++|+++|+++|+++|+|++|+.. .
T Consensus 111 ----------~~v~~v~~~d~e~l~~~l--~~~tklV~vesp~NptG~v~---dl~~I~~la~~~gi~livD~t~a~~~~ 175 (397)
T PRK05939 111 ----------VEVTMVDATDVQNVAAAI--RPNTRMVFVETIANPGTQVA---DLAGIGALCRERGLLYVVDNTMTSPWL 175 (397)
T ss_pred ----------CEEEEECCCCHHHHHHhC--CCCCeEEEEECCCCCCCCHH---hHHHHHHHHHHcCCEEEEECCcccccc
Confidence 367777653222222112 36899999999999999874 5999999999999999999998632 1
Q ss_pred cCCCCCcccccCCCCcceEEEecccccccccccceeeeecccccccc-CCcchhH--------H--HHHHH----hhccC
Q 045431 252 SDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFS-DGFPVAK--------D--FNRIV----CTCFN 316 (433)
Q Consensus 252 ~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~-~~~~~~~--------~--~~~~~----~~~~~ 316 (433)
+. +. . .+..+++.|+||.++..|.++|++++++..... ....... . +.... .....
T Consensus 176 ~~--~~---~----~gaDivv~S~sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 246 (397)
T PRK05939 176 FR--PK---D----VGASLVINSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRDMGA 246 (397)
T ss_pred cC--cc---c----cCCEEEEecCeecccCCCCeEEEEEecCcccccccccchhhhhhccchhhHHHHHHHHHHHHhcCC
Confidence 11 11 1 134599999999999789999998875332100 0000000 0 11111 11111
Q ss_pred CCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc
Q 045431 317 GASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 317 ~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 359 (433)
..++.. +..++ .+.+.+..+.++..++...+.+.|+++
T Consensus 247 ~~~p~~---a~l~~--rgl~tl~~R~~~~~~na~~la~~L~~~ 284 (397)
T PRK05939 247 TLSSEA---AHRIA--IGAETLALRVDRSCSNALALAQFLEAH 284 (397)
T ss_pred CCCHHH---HHHHH--cCcCcHHHHHHHHHHHHHHHHHHHHhC
Confidence 222322 22222 344555666777777899999999987
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-17 Score=158.70 Aligned_cols=343 Identities=14% Similarity=0.097 Sum_probs=212.1
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCC---CCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGY---SGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDIS 140 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~ 140 (433)
..|+|--+++ -.++.+.+++...+..... .++ .-|+-.....++.....+..++.++++-.+|..-||+++.+.
T Consensus 50 ~~l~LiasEN--~~s~~v~~a~~s~l~nkya-eg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~a~~anvqp~Sg~~An~~ 126 (493)
T PRK13580 50 SSLKLIASEN--YSSLAVQLAMGNLLTDKYA-EGTPGHRFYAGCQNVDTVEWEAAEHAKELFGAEHAYVQPHSGADANLV 126 (493)
T ss_pred cCceEecccc--cCCHHHHHHhcccccccCc-CCCCCccccCCCchHHHHHHHHHHHHHHHhCCCcccccCCCcHHHHHH
Confidence 3577766665 3567777777776654322 221 234334555556555555555567888889999999999998
Q ss_pred HHHHhcCC-------------------------------CCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEee
Q 045431 141 RLQIVFGS-------------------------------NVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMR 189 (433)
Q Consensus 141 ~l~~l~~~-------------------------------gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 189 (433)
.+.++++| ||+|+-.++...++.......+. ...+.....++
T Consensus 127 v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~-------~~~~~~~~~y~ 199 (493)
T PRK13580 127 AFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNI-------SGKMFHQRSYG 199 (493)
T ss_pred HHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccch-------hhheeeeEecc
Confidence 88888876 79999888777665322111111 11123566666
Q ss_pred cCccCCcccCCCC-----CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCC
Q 045431 190 CTAENGFFPDLST-----VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPG 264 (433)
Q Consensus 190 ~~~~~~~~~~~~~-----~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 264 (433)
++++.+ ..+++. .+.++.|+++..+|- |...+ +++|.++|+++|+++++|++|+.....+.... .....
T Consensus 200 vd~~~g-~iD~d~l~~~~~~~~plvii~g~S~~-~~~~d---l~~i~eia~~~gA~L~VD~AH~~Gligg~~~~-~~~~~ 273 (493)
T PRK13580 200 VDPDTG-LLDYDEIAALAREFKPLILVAGYSAY-PRRVN---FAKLREIADEVGAVLMVDMAHFAGLVAGKVFT-GDEDP 273 (493)
T ss_pred cCcccC-ccCHHHHHHHHhhcCCEEEEeCcccc-CCCcC---HHHHHHHHHHcCCEEEEECchhhceeccccch-hhcCC
Confidence 664432 223222 356667777777665 44556 88888889999999999999986444322110 00000
Q ss_pred CCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHH
Q 045431 265 AKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGF 344 (433)
Q Consensus 265 ~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 344 (433)
..+..++++|++|++ .|.+.|+++++++++ +.+.+.......++.++..+++...+...........+++
T Consensus 274 ~~~~D~vtgT~hKaL--~GP~GG~I~~~~~l~--------~~L~~a~P~i~gg~l~p~iAA~avAl~e~~~~ef~~y~~~ 343 (493)
T PRK13580 274 VPHADIVTTTTHKTL--RGPRGGLVLAKKEYA--------DAVDKGCPLVLGGPLPHVMAAKAVALAEARTPEFQKYAQQ 343 (493)
T ss_pred CCCCcEEEeCChhhc--cCCCeEEEEecHHHH--------HHHhhCCCcccCCCccHHHHHHHHHHHHHhCccHHHHHHH
Confidence 122348899999998 334459999988774 4443222222222233333222223321111112567889
Q ss_pred HHHHHHHHHHHHhhcCCeeec-CCCccEEEEECCCCC-hHHHHHHHHHcCCeEecCCCCC-CCCC---CCeEEEeecc--
Q 045431 345 YKENTDIIVETFNSLGFKVYG-GKNAPYVWVQFPGRS-SWDVFSEILEKTHVVTTPGSGF-GPGG---EGFIRVSAFG-- 416 (433)
Q Consensus 345 ~~~~~~~l~~~l~~~g~~~~~-~~~g~~~~~~~~~~~-~~~~~~~l~~~~gi~v~~g~~f-~~~~---~~~iRi~~~~-- 416 (433)
+.++.+.|.+.|.+.|+.+.. ...+..+++.+.+.. ....+...|.+.||.+.+-... .+.+ ...|||+...
T Consensus 344 l~~Na~~La~~L~~~G~~vv~ggTdshIV~V~lg~~~~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~t 423 (493)
T PRK13580 344 VVDNARALAEGFLKRGARLVTGGTDNHLVLIDVTSFGLTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALT 423 (493)
T ss_pred HHHHHHHHHHHHHhcCCCccCCCCCCCEEEEEeCCHHHHHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccchhh
Confidence 999999999999999998753 245678888887433 3335555666779999753322 1233 5679999532
Q ss_pred ----ChhHHHHHHHHHHHhh
Q 045431 417 ----HRGNVLEACKRFKHLY 432 (433)
Q Consensus 417 ----~~~~l~~~l~~l~~~l 432 (433)
+++|+++.++.|.+++
T Consensus 424 trg~teedi~~iad~l~~~l 443 (493)
T PRK13580 424 TLGMGSDEMDEVAELIVKVL 443 (493)
T ss_pred hcCCCHHHHHHHHHHHHHHH
Confidence 5899999999998765
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.1e-17 Score=156.66 Aligned_cols=304 Identities=14% Similarity=0.137 Sum_probs=183.6
Q ss_pred hHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHh-cCCCCEEEEe
Q 045431 78 PEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIV-FGSNVTMAVQ 155 (433)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l-~~~gd~Vl~~ 155 (433)
.+.-.+++.+.+.. +...+ .....+|++++|+++ +. +++++++|+++++.+ +..+ +++||+|+++
T Consensus 13 ~~~e~~~~~~~l~~-----~~~~~--g~~~~~le~~la~~~----g~--~~~v~~~sgt~al~lal~al~~~~Gd~Viv~ 79 (379)
T PRK11658 13 GDEELAAVKEVLRS-----GWITT--GPKNQALEQAFCQLT----GN--QHAIAVSSATAGMHITLMALGIGPGDEVITP 79 (379)
T ss_pred CHHHHHHHHHHHHc-----CCccC--CHhHHHHHHHHHHHh----CC--CeEEEECCHHHHHHHHHHHcCCCCCCEEEEC
Confidence 34556777777652 22223 336799999999997 54 367888999999997 5666 7899999999
Q ss_pred CCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCC---CC--CCCccEEEEcCCCCccccCCCHHHHHHH
Q 045431 156 DPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDL---ST--VARTDIIFFCSPNNPTGAAATREQLTRL 230 (433)
Q Consensus 156 ~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~i~l~~p~nPtG~~~~~~~~~~i 230 (433)
+|+|..+...+...| .+++.++++.++ +..++ ++ .+++++|+ |+||+|...+ +++|
T Consensus 80 ~~~~~~~~~~~~~~G------------~~~v~vd~~~~~-~~~d~~~l~~~i~~~tkav~---~~~~~G~~~d---~~~i 140 (379)
T PRK11658 80 SLTWVSTLNMIVLLG------------ATPVMVDVDRDT-LMVTPEAIEAAITPRTKAII---PVHYAGAPAD---LDAI 140 (379)
T ss_pred CCcHHHHHHHHHHcC------------CEEEEEecCCCc-CCcCHHHHHHhcccCCeEEE---EeCCCCCcCC---HHHH
Confidence 999999988888888 478888886543 32232 22 35788876 5667999876 7888
Q ss_pred HHHHHHcCCEEEEeccccc-cccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHH
Q 045431 231 VQFAKDNGSIIVYDSAYAL-YISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNR 309 (433)
Q Consensus 231 ~~~a~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~ 309 (433)
.++|++||++||+|++|+. ..+.+.+ +... + +.+.||++...+++.+.|+++.+++-+ .++++.
T Consensus 141 ~~~a~~~gi~vi~D~a~a~g~~~~~~~--~g~~----g--~~~~Sf~~~K~l~~g~GG~v~~~~~~~-------~~~~~~ 205 (379)
T PRK11658 141 RAIGERYGIPVIEDAAHAVGTYYKGRH--IGAR----G--TAIFSFHAIKNITCAEGGLVVTDDDEL-------ADRLRS 205 (379)
T ss_pred HHHHHHcCCeEEEECCCccCCeECCee--cCCC----C--CEEEeCCCCCcCcccCceEEEECCHHH-------HHHHHH
Confidence 9999999999999999984 3333221 1111 1 134566644444666788888764332 233333
Q ss_pred HHhhcc--------------------CCC--cHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCe-eecC
Q 045431 310 IVCTCF--------------------NGA--SNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFK-VYGG 366 (433)
Q Consensus 310 ~~~~~~--------------------~~~--~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~-~~~~ 366 (433)
...... .+. ......|++...+ .+.+++..++-++..+.+.+.|+++++. +..+
T Consensus 206 ~~~~G~~~~~~~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~q---l~~l~~~~~~r~~~a~~~~~~L~~~~~~~~~~~ 282 (379)
T PRK11658 206 LKFHGLGVDAFDRQTQGRAPQAEVLTPGYKYNLADINAAIALVQ---LAKLEALNARRREIAARYLQALADLPFQPLSLP 282 (379)
T ss_pred HHHcCCCcchhhhhcccCCCcceeeccccccCcCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCccCcCC
Confidence 221110 000 0111122232222 2345666677777777788888776432 2222
Q ss_pred CC----ccE-EEEECC----CCChHHHHHHHHHcCCeEecCCC----C---CCC---C---------CCCeEEEeec--c
Q 045431 367 KN----APY-VWVQFP----GRSSWDVFSEILEKTHVVTTPGS----G---FGP---G---------GEGFIRVSAF--G 416 (433)
Q Consensus 367 ~~----g~~-~~~~~~----~~~~~~~~~~l~~~~gi~v~~g~----~---f~~---~---------~~~~iRi~~~--~ 416 (433)
.. .++ ..+.++ +.+..++.+.|. ++||.+.+.. . |.. . ....+.|-+. .
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~-~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l 361 (379)
T PRK11658 283 AWPHQHAWHLFIIRVDEERCGISRDALMEALK-ERGIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERICSLPLFPDM 361 (379)
T ss_pred CCCCceeEEEEEEEECCccccCCHHHHHHHHH-HCCCCCcccCcCcccChhhhccCCCCCChHHHHHHhCeEEccCCCCC
Confidence 11 222 223443 234556666654 5598765321 0 000 0 0123444432 4
Q ss_pred ChhHHHHHHHHHHHhh
Q 045431 417 HRGNVLEACKRFKHLY 432 (433)
Q Consensus 417 ~~~~l~~~l~~l~~~l 432 (433)
++++++..++.|++++
T Consensus 362 ~~~~~~~i~~~i~~~~ 377 (379)
T PRK11658 362 TDADVDRVITALQQIA 377 (379)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 7999999999998865
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.3e-17 Score=158.68 Aligned_cols=346 Identities=12% Similarity=0.078 Sum_probs=206.3
Q ss_pred HhcCCCCceEEecCC--CCCC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcC
Q 045431 57 MLKYPDAEVISLGIG--DTTE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSD 133 (433)
Q Consensus 57 ~~~~~~~~~i~l~~g--~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~ 133 (433)
....+++..+|+..| ...+ ..+|.+.+++.+++.+.. ....|-. .+.+..+|+.|....+...+.+++++
T Consensus 69 l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~Av~~ql~~l~---~~~~~~~----~~~~~~lAe~L~~~~p~~~~~v~f~~ 141 (442)
T TIGR03372 69 LIDTQGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQP---LHSQELL----DPLRALLAKTLAALTPGKLKYSFFCN 141 (442)
T ss_pred EEECCCCEEEECCccHHhhhcCCCCHHHHHHHHHHHHhCC---CcccccC----CHHHHHHHHHHHHhCCCCcCEEEEeC
Confidence 344567788998776 3333 478899999999987642 2223322 33444455554432232336799999
Q ss_pred ChHHHHHHHHHh---c---CCCCEEEEeCCCChhhhhhHHHhCCcccc-cccccccceEEEeecCccCCcccCCCC----
Q 045431 134 GAKCDISRLQIV---F---GSNVTMAVQDPSYPAYVDSSVIMGQTGEF-QKDAEKYGKIEYMRCTAENGFFPDLST---- 202 (433)
Q Consensus 134 G~~~al~~l~~l---~---~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 202 (433)
++++|.++...+ . ....+|+..+.+|++.............+ ..++.....+..+|.++.......++.
T Consensus 142 SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~d~~~~~~~l~~~~~~ 221 (442)
T TIGR03372 142 SGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFGDIEAMLKALNECKKT 221 (442)
T ss_pred CchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCCCHHHHHHHHHHHhcC
Confidence 999998863222 2 12367888888888865444333211111 111111122344444321111111211
Q ss_pred CCCccEEEEcCC-CCccccCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccc
Q 045431 203 VARTDIIFFCSP-NNPTGAAA-TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAG 280 (433)
Q Consensus 203 ~~~~~~i~l~~p-~nPtG~~~-~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~ 280 (433)
..++.+|+ ..| +.--|... +++.++++.++|++||+++|.||++..+...|.......+.-.+| ++ +++|.+|
T Consensus 222 ~~~vAavI-vEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PD-iv---t~gK~lg 296 (442)
T TIGR03372 222 GDDVAAII-LEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPD-IL---CLAKALG 296 (442)
T ss_pred CCcEEEEE-EeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhcCCCCC-ee---eehhhhc
Confidence 12345544 456 55556655 688999999999999999999999987655554322222322344 22 5899998
Q ss_pred ccc-cceeeeeccccccccCCcchhHHHH--HHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHh
Q 045431 281 FTG-VRLGWTVIPKELLFSDGFPVAKDFN--RIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFN 357 (433)
Q Consensus 281 ~~G-~r~G~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~ 357 (433)
.| +.+|.+++++++. +.+. .....++.+.++++.+++.+.|+.... +++.++.++.-+++.+.|+
T Consensus 297 -~G~~Pigavv~~~~i~--------~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~---~~l~~~~~~~G~~l~~~L~ 364 (442)
T TIGR03372 297 -GGVMPIGATIATEAVF--------SVLFDNPFLHTTTFGGNPLACAAALATINELLE---KNLPAQAAIKGDFLLDGFQ 364 (442)
T ss_pred -CCcccceEEEecHHHH--------HhhhccCccccCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHH
Confidence 88 6999999987774 3332 123345566788888888888763221 2334455566666666665
Q ss_pred hc----C--CeeecCCCccEEEEECCCCC-hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe--eccChhHHHHHHHHH
Q 045431 358 SL----G--FKVYGGKNAPYVWVQFPGRS-SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS--AFGHRGNVLEACKRF 428 (433)
Q Consensus 358 ~~----g--~~~~~~~~g~~~~~~~~~~~-~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l 428 (433)
++ . +.-+. ..|.++.+.+.... ...+...+++ +||.+.+... +.+.+||. +..+++++++++++|
T Consensus 365 ~l~~~~~~~i~~vR-G~Gl~~giel~~~~~~~~i~~~l~~-~Gvl~~~~~~----~~~~lr~~Ppl~~t~~~id~~~~~l 438 (442)
T TIGR03372 365 QLAAEYPDLIIEAR-GKGLLMAIEFRDNEIGYAFAKELFQ-QNILVAGTLN----NAKSIRIEPPLTITIEQCALVIKAA 438 (442)
T ss_pred HHHHhCCCceEEEe-cceEEEEEEeCChHHHHHHHHHHHH-CCcEEeecCC----CCCEEEEECCcccCHHHHHHHHHHH
Confidence 53 2 11122 25677778876322 3445555555 5999965311 23689988 467999999999999
Q ss_pred HHhh
Q 045431 429 KHLY 432 (433)
Q Consensus 429 ~~~l 432 (433)
.+++
T Consensus 439 ~~~~ 442 (442)
T TIGR03372 439 KDAL 442 (442)
T ss_pred HHhC
Confidence 8875
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.9e-19 Score=154.88 Aligned_cols=323 Identities=15% Similarity=0.174 Sum_probs=214.5
Q ss_pred cCCCCceEEecCCCCC--CC---ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc-cCC-CCCCcEEE
Q 045431 59 KYPDAEVISLGIGDTT--EP---IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK-DLG-IEEGDIFV 131 (433)
Q Consensus 59 ~~~~~~~i~l~~g~~~--~~---~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~-~~~-~~~~~i~~ 131 (433)
+.+++.-|||+.|.+. .. ..+.|.+|=.+.+.. .....|-|..|.+++.+.-++++.. +-. +....|+.
T Consensus 48 ~D~n~~KiNLgvGaYRdd~gKp~vL~~VrkAE~ql~~~----~ldKEYlpI~Gl~eF~k~sakLa~G~~s~~ik~~Ri~t 123 (427)
T KOG1411|consen 48 KDPNPKKINLGVGAYRDDNGKPYVLPSVRKAEQQLASL----SLDKEYLPITGLAEFNKLSAKLALGDNSPVIKEKRIVT 123 (427)
T ss_pred cCCCcceeeecccceecCCCCeeeeHHHHHHHHHHhhh----cccchhccccchHHHHHHHHHHhhcCCchhhhccceeE
Confidence 3445567999999872 22 234555554444432 4445899999999999999999753 222 23344443
Q ss_pred c--CChHHHHHH---HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCCCCc
Q 045431 132 S--DGAKCDISR---LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVART 206 (433)
Q Consensus 132 ~--~G~~~al~~---l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (433)
+ -+++.++.+ +...+-++..|.+++|+|.+....+..+|... ..++|........|- .++..++...+.-
T Consensus 124 vQ~lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh~~if~~ag~~~----~~yrYyd~~t~gld~-~g~ledl~~~p~g 198 (427)
T KOG1411|consen 124 VQTLSGTGALRVGAEFLARFYPSRDIYIPDPTWGNHKNIFKDAGLPV----KFYRYYDPKTRGLDF-KGMLEDLGEAPEG 198 (427)
T ss_pred EEeccCcchhhHHHHHHHhhccccceeecCCcccccCccccccCcce----eeeeeccccccccch-HHHHHHHhcCCCC
Confidence 3 233444433 45556678999999999999999999998421 111111222222221 2334444444444
Q ss_pred cEEEEc-CCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCC---cccccCCCCcceEEEeccccccccc
Q 045431 207 DIIFFC-SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPR---SIFEIPGAKEVAIETSSFSKYAGFT 282 (433)
Q Consensus 207 ~~i~l~-~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~---~~~~~~~~~~~vi~i~S~sK~~~~~ 282 (433)
..|++. ..|||||+-.+.|.+++|.++.++.+.+-+.|.+|..|..++... .+.-+.....++++.-||.|.+|+-
T Consensus 199 s~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~laQSyAKNMGLY 278 (427)
T KOG1411|consen 199 SIILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEILLAQSYAKNMGLY 278 (427)
T ss_pred cEEEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHcCCceEeehhhhhhcchh
Confidence 455554 449999999999999999999999999999999999987764322 2222222245688899999999999
Q ss_pred ccceee--eeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-----hHHHHHHHHHHHHHHHHHHH
Q 045431 283 GVRLGW--TVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-----KAVHEVIGFYKENTDIIVET 355 (433)
Q Consensus 283 G~r~G~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~l~~~ 355 (433)
|-|+|. +++.+.-. ..++...+..+.......++.-....+...|.+... ..++.+..++...|+.+.+.
T Consensus 279 gERvGa~svvc~~ad~---A~rV~SQlk~liRpmYSnPP~hGArIv~~Il~d~~l~~~W~~evk~MadRi~~mR~~L~d~ 355 (427)
T KOG1411|consen 279 GERVGALSVVCKDADE---AKRVESQLKILIRPMYSNPPLHGARIVATILSDPDLKNQWLGEVKGMADRIISMRQQLFDA 355 (427)
T ss_pred hhccceeEEEecCHHH---HHHHHHHHHHHhcccccCCCccchhhhhhccCChHHHHHHHHHHHHHHHhhhhhHHHHhHH
Confidence 999996 35554442 223334455555555666666677777778876544 33677777888889999999
Q ss_pred HhhcC----CeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEec
Q 045431 356 FNSLG----FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTT 397 (433)
Q Consensus 356 l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~ 397 (433)
|+..| |.....+-|+|.+-.+. .+..+.+.+++.|.+.
T Consensus 356 L~~~gs~~~W~hI~~QIGMF~fTgl~----peQv~~l~ke~~iYmT 397 (427)
T KOG1411|consen 356 LEKEGSPGNWSHITKQIGMFCFTGLN----PEQVDWLTKEYHIYLT 397 (427)
T ss_pred hhcCCCCccHHHHHHhhheeeecCCC----HHHHHHHHhhheeeec
Confidence 98764 44455567898886664 3677888889899885
|
|
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-18 Score=153.96 Aligned_cols=288 Identities=18% Similarity=0.235 Sum_probs=177.0
Q ss_pred CCCHHHHHHHHHHHhc-c-CCCCCCcEEEcCChHHHHHH-HHHhcCC----C--CEEEEeCCCChhhhhhHHHhCCcccc
Q 045431 105 QGEKPLRAAIASTFYK-D-LGIEEGDIFVSDGAKCDISR-LQIVFGS----N--VTMAVQDPSYPAYVDSSVIMGQTGEF 175 (433)
Q Consensus 105 ~g~~~lr~~la~~l~~-~-~~~~~~~i~~~~G~~~al~~-l~~l~~~----g--d~Vl~~~p~~~~~~~~~~~~g~~~~~ 175 (433)
--.++|.+.|.+.-.- | -..+...|++++|+++.+++ +.+|... + -.|+...|.|+.|......+...
T Consensus 43 f~s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~f~s~--- 119 (363)
T PF04864_consen 43 FISPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQTDFFDSR--- 119 (363)
T ss_dssp TS-HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT-BT---
T ss_pred eccHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHHHhcccc---
Confidence 3457888888765332 3 22356789999999999997 5555322 1 47899999999998765444321
Q ss_pred cccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC
Q 045431 176 QKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN 255 (433)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~ 255 (433)
.....-|. ..+. + .....+-.=++++||||.|.. ++.++ +.-+..+|.|-+|.+=.
T Consensus 120 ---------~y~w~Gda-~~~~-~-~~~~~~~IElVTSPNNPDG~l-----r~~V~---~g~~~k~I~D~AYYWPh---- 175 (363)
T PF04864_consen 120 ---------LYKWAGDA-SNFK-N-SDNPSPYIELVTSPNNPDGQL-----REAVL---NGSSGKVIHDLAYYWPH---- 175 (363)
T ss_dssp ---------TEEEEEEC-CCGT-T--S-CCGEEEEEESS-TTT-----------SS---TTTEEEEEEE-TT-STT----
T ss_pred ---------CccccccH-Hhhc-c-CCCCCCeEEEEeCCCCCcccc-----cchhc---CCCCcceeeeeeeeccc----
Confidence 11111111 1121 0 011233334667999999985 34454 34456679999998522
Q ss_pred CCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh
Q 045431 256 PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF 335 (433)
Q Consensus 256 ~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~ 335 (433)
.+++.+. .|..|.+.|+||.-|-+|.|+||.++.++.+ .+++..+....+.++|.=+|.-++.+|+....
T Consensus 176 yTpI~~~---aD~DiMLFT~SK~TGHAGSR~GWAlVKD~~V-------a~kM~~y~~lnTiGvS~dsQLRa~kiLk~v~~ 245 (363)
T PF04864_consen 176 YTPITAP---ADHDIMLFTLSKLTGHAGSRFGWALVKDEEV-------AKKMTKYMELNTIGVSRDSQLRALKILKVVLD 245 (363)
T ss_dssp TS---S----B--SEEEEEHHHHCS-GGG-EEEEEES-HHH-------HHHHHHHHHHHCSS--HHHHHHHHHHHHHHHH
T ss_pred ccccCCC---CCCceEEEEEecccCccccccceeeecCHHH-------HHHHHHHHHHhcccCcHHHHHHHHHHHHHHHh
Confidence 2333332 2345889999999999999999999988876 67888888889999999999888887762111
Q ss_pred ---------hHHHHHHHHHHHHHHHHHHHHhhcC-Ceee--cC-----------CCccEEEEECCCCChHHHHHHHHHcC
Q 045431 336 ---------KAVHEVIGFYKENTDIIVETFNSLG-FKVY--GG-----------KNAPYVWVQFPGRSSWDVFSEILEKT 392 (433)
Q Consensus 336 ---------~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~--~~-----------~~g~~~~~~~~~~~~~~~~~~l~~~~ 392 (433)
+..+--++.+++|.+.|.+.+..-+ +.+. .| ....|.|+++...... -....++++
T Consensus 246 ~~~~~~~~~~~F~f~~~~M~~RW~~L~~~~~~S~rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~eed~-DC~~~l~~~ 324 (363)
T PF04864_consen 246 GYGTEKGTEDIFHFGYSTMRERWEKLRAAVSASKRFSLQKFSPQYCNFFKRVREPSPAFAWLKCEREEDE-DCYAVLREA 324 (363)
T ss_dssp HCCHHTTTTSHHHHHHHHHHHHHHHHHHHHCCSSSEEE---SCEEETTTTCEEE---SEEEEEESSCGGS-SHHHHHHCT
T ss_pred cccCCCCccchHHHHHHHHHHHHHHHHHHHHhcCceecCcCCchhccccccccCCCCCeEEEecCCcccc-cHHHHHHhC
Confidence 2345567788899999999987652 2221 11 2456899999854332 334556788
Q ss_pred CeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHh
Q 045431 393 HVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHL 431 (433)
Q Consensus 393 gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~ 431 (433)
||..+.|..|+. +..++|||+-.++++++.++++|..+
T Consensus 325 ~I~tr~G~~fga-~~ryVRlSml~~~d~Fd~l~~rL~~l 362 (363)
T PF04864_consen 325 KIITRSGVLFGA-DSRYVRLSMLKRDDDFDQLLERLSKL 362 (363)
T ss_dssp TEEEEEGGGGTS--TTEEEEESSS-HHHHHHHHHHHHCC
T ss_pred CcccCCCCccCC-CCCeEEEeccCCHHHHHHHHHHHHhh
Confidence 999999999985 56899999989999999999999865
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.7e-17 Score=156.57 Aligned_cols=337 Identities=12% Similarity=0.038 Sum_probs=201.5
Q ss_pred HhcCCCCceEEecCCCC--CC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcC
Q 045431 57 MLKYPDAEVISLGIGDT--TE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSD 133 (433)
Q Consensus 57 ~~~~~~~~~i~l~~g~~--~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~ 133 (433)
....+++..|||..|.. .+ ..+|.+.+++.+++.+... .+ .....++...+++++.+.. ..+.+++++
T Consensus 30 ~~d~dG~~~lD~~sg~~~~~lGh~~p~v~~a~~~q~~~~~~-----~~--~~~~~~~~~~la~~l~~~~--~~~~v~f~~ 100 (395)
T PRK03715 30 LYDHNGKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKLIN-----PS--PAFYNEPMAKLAGLLTQHS--CFDKVFFAN 100 (395)
T ss_pred EEECCCCEEEECCcChhhccCCCCCHHHHHHHHHHHHhccc-----cc--ccccCHHHHHHHHHHhhcc--CCCEEEEeC
Confidence 33456778999986532 12 2478999999998875321 11 1133567778888885422 246899999
Q ss_pred ChHHHHHHHHHhc-------CCC-CEEEEeCCCChhhhh-hHHHhCCcccccccccccceEEEeecCccCCcccCCCC--
Q 045431 134 GAKCDISRLQIVF-------GSN-VTMAVQDPSYPAYVD-SSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-- 202 (433)
Q Consensus 134 G~~~al~~l~~l~-------~~g-d~Vl~~~p~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 202 (433)
++++|......++ ++| .+|+..+.+|++... .+...+.......+......+...+.++ ..+++.
T Consensus 101 SGseA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~~d----~~~l~~~l 176 (395)
T PRK03715 101 SGAEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELND----IASVEKLI 176 (395)
T ss_pred CcHHHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeCCch----HHHHHHHc
Confidence 9999988632222 123 578888888877543 3333332111000100000111111111 011111
Q ss_pred CCCccEEEEcCC-CCccccCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccc
Q 045431 203 VARTDIIFFCSP-NNPTGAAA-TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAG 280 (433)
Q Consensus 203 ~~~~~~i~l~~p-~nPtG~~~-~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~ 280 (433)
.+++.+|++ .| ++..|... +++.+++|.++|++||+++|.||++..+...|.......+.-.+| +.+++|.+|
T Consensus 177 ~~~~aavi~-Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv~PD----i~t~gK~lg 251 (395)
T PRK03715 177 TDKTVAVML-EPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPD----IMTLGKGIG 251 (395)
T ss_pred CCCceEEEE-eCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCCCCc----eeeehhhhh
Confidence 135555554 55 55566654 689999999999999999999999998655554322222222244 357899998
Q ss_pred ccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-
Q 045431 281 FTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL- 359 (433)
Q Consensus 281 ~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 359 (433)
.|+.+|.+++++++. .+......++.+.++++.+++.+.|+.... +++.++++++.+++.+.|+++
T Consensus 252 -~G~p~~av~~~~~i~---------~~~~~~~~~T~~g~pl~~aaala~L~~l~~---~~l~~~~~~~g~~l~~~L~~l~ 318 (395)
T PRK03715 252 -GGVPLAALLAKAEVA---------VFEAGDQGGTYNGNPLMTAVGVAVISQLLA---PGFLEGVRARGEYLKEKLLELS 318 (395)
T ss_pred -CCcceEEEEEccccc---------cccCCCcCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHh
Confidence 789999999988873 111112234445678888878777763211 345666667777777777653
Q ss_pred ---CCeeecCCCccEEEEECCCCChHHHHHHHHHcC---CeEecCCCCCCCCCCCeEEEe--eccChhHHHHHHHHHHHh
Q 045431 360 ---GFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKT---HVVTTPGSGFGPGGEGFIRVS--AFGHRGNVLEACKRFKHL 431 (433)
Q Consensus 360 ---g~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~---gi~v~~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~ 431 (433)
++..+. ..|.++-+.+.......+. ..+.+. ||.+.+. ....+||+ +..+++++++++++|+++
T Consensus 319 ~~~~i~~vr-G~Glm~~i~l~~~~~~~~~-~~~~~~~~~Gi~~~~~------~~~~lR~~p~l~~t~~ei~~~~~~l~~~ 390 (395)
T PRK03715 319 EERGLEGER-GEGLLRALLLGKDIGPQIV-EKARDMQPDGLLLNAP------RPNLLRFMPALNVTTEEIDQMIAMLRSV 390 (395)
T ss_pred hcCCcCeEE-cceeEEEEEecCchHHHHH-HHHHhccCCCEEEeec------CCCEEEEeCCcccCHHHHHHHHHHHHHH
Confidence 443333 2467777777532222222 223344 9998642 13579999 456999999999999987
Q ss_pred h
Q 045431 432 Y 432 (433)
Q Consensus 432 l 432 (433)
+
T Consensus 391 l 391 (395)
T PRK03715 391 L 391 (395)
T ss_pred H
Confidence 6
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.6e-17 Score=159.79 Aligned_cols=343 Identities=12% Similarity=0.079 Sum_probs=198.1
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcc-cCCCCCCCCC-CCCCHHH----HHHHHHHHhccCCCCCCcEEEc---CC
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALS-TQEGYSGYGA-EQGEKPL----RAAIASTFYKDLGIEEGDIFVS---DG 134 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~Y~~-~~g~~~l----r~~la~~l~~~~~~~~~~i~~~---~G 134 (433)
..|+|-.+++ ..++.+++++...+.... .......|.. ......+ |+.+++++ +++++++.++ +|
T Consensus 35 ~~l~l~~sen--~~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf----~a~~~~~~~~~~~~s 108 (452)
T PTZ00094 35 EGLELIASEN--FTSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAF----GLDPEEWGVNVQPYS 108 (452)
T ss_pred cCeeEecccc--cCCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHh----CCCcccceeecCCCc
Confidence 4688888876 367888888888875332 0111122211 1112222 33455554 7888887666 67
Q ss_pred hHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC---CCCccEE
Q 045431 135 AKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST---VARTDII 209 (433)
Q Consensus 135 ~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~i 209 (433)
++++..+ +.+++++||+|++....|.++...+.......+ .......++..++++.++..+.+ +++ ..+++++
T Consensus 109 gt~an~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~--~~~~~~~~~~~~~~~~~g~id~~~L~~~l~~~~~~lv 186 (452)
T PTZ00094 109 GSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKV--SATSIYFESLPYQVNEKGLIDYDKLEELAKAFRPKLI 186 (452)
T ss_pred hHHHHHHHHHHhcCCCCEEEecccccCCccccccccccccc--ccceeeeeeeecccCCCCCcCHHHHHHHHHHhCCCEE
Confidence 7777776 788899999999988888776543321110000 00000123444555543332222 221 1356766
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCcccccCCCCcceEEEeccccccccccccee
Q 045431 210 FFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN--PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLG 287 (433)
Q Consensus 210 ~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G 287 (433)
++. ++.+|+..+ +++|.++|+++|+++++|++++....... +.++ + +..++++|++|+++ |.+.|
T Consensus 187 i~~--~s~~g~~~d---i~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~---~---~~D~l~~S~hK~l~--GP~Gg 253 (452)
T PTZ00094 187 IAG--ASAYPRDID---YKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPF---P---YADVVTTTTHKSLR--GPRSG 253 (452)
T ss_pred EEe--CCCCCCccC---HHHHHHHHHHcCCEEEEeccchhccccCCCCCCCC---C---CCcEEEcCCccCCC--CCCce
Confidence 653 334899888 67777889999999999999985333221 1121 1 23488999999883 33348
Q ss_pred eeeccccccccCCcchhHHHHHHHhhcc-CCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecC
Q 045431 288 WTVIPKELLFSDGFPVAKDFNRIVCTCF-NGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGG 366 (433)
Q Consensus 288 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ 366 (433)
++++++..... +...+........ .+++....++..++++.......+..++++.++++++.+.|.+.|+.+..+
T Consensus 254 ~l~~~~~~~~~----l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~g~~v~~~ 329 (452)
T PTZ00094 254 LIFYRKKVKPD----IENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKRGYDLVTG 329 (452)
T ss_pred EEEEecccchH----HHHhhccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhCCcEEecC
Confidence 88887665310 0111111111111 123333333333344322112346778899999999999998888887643
Q ss_pred C-CccEEEEECC--CCChHHHHHHHHHcCCeEe-cCCCCCCC--CCCCeEEEee--ccC----hhHHHHHHHHHHHhh
Q 045431 367 K-NAPYVWVQFP--GRSSWDVFSEILEKTHVVT-TPGSGFGP--GGEGFIRVSA--FGH----RGNVLEACKRFKHLY 432 (433)
Q Consensus 367 ~-~g~~~~~~~~--~~~~~~~~~~l~~~~gi~v-~~g~~f~~--~~~~~iRi~~--~~~----~~~l~~~l~~l~~~l 432 (433)
. .....++.+. +.+... +..+++++||.+ .++..+.+ ..++.+|+++ +++ ++|++++++.|.+++
T Consensus 330 ~~~~~~~~v~~~~~~~~~~~-~~~~L~~~gI~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~~ 406 (452)
T PTZ00094 330 GTDNHLVLVDLRPFGITGSK-MEKLLDAVNISVNKNTIPGDKSALNPSGVRLGTPALTTRGAKEKDFKFVADFLDRAV 406 (452)
T ss_pred CCCCceEeecCCcCCCCHHH-HHHHHHHCCcEEecccCCCCCcCCCCCeEEECCHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 2 1234555554 334444 445556679999 55554432 2357899994 444 899999999998875
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3e-17 Score=160.46 Aligned_cols=354 Identities=12% Similarity=0.092 Sum_probs=210.2
Q ss_pred HHHHHHHhcCCCCceEEecCCCC--C-CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCC
Q 045431 51 RRKAAHMLKYPDAEVISLGIGDT--T-EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEG 127 (433)
Q Consensus 51 ~~~~~~~~~~~~~~~i~l~~g~~--~-~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~ 127 (433)
+..+......+++..||+..|.- . -..+|.+.+++.+++.+... .....| ..+.+..+|+.+.+..+.+.+
T Consensus 40 ~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~q~~~~~~-~~~~~~-----~~~~~~~la~~l~~~~p~~~~ 113 (460)
T PRK06541 40 RGEGCYIWDDRGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTLAF-FPLWSY-----AHPPAIELAERLAALAPGDLN 113 (460)
T ss_pred eCcccEEEeCCCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhCcC-cccccc-----CCHHHHHHHHHHHHhCCCCcC
Confidence 34444455567788999977632 2 23679999999999976421 111122 123344455555432233346
Q ss_pred cEEEcCChHHHHHH-HH-H-hc---C---CCCEEEEeCCCChhhhhhHHHh-CCcccccccccccceEEEeecCcc----
Q 045431 128 DIFVSDGAKCDISR-LQ-I-VF---G---SNVTMAVQDPSYPAYVDSSVIM-GQTGEFQKDAEKYGKIEYMRCTAE---- 193 (433)
Q Consensus 128 ~i~~~~G~~~al~~-l~-~-l~---~---~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~---- 193 (433)
.+++++++++|... +. + .. . ...+|+..+-+|++........ +.......++.....+..+|....
T Consensus 114 ~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 193 (460)
T PRK06541 114 RVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAP 193 (460)
T ss_pred EEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCcccccc
Confidence 89999999999885 31 1 11 1 2367888888888765433322 211100001111112232332110
Q ss_pred ---CCc-------ccCCCC-----CCCccEEEEcCC-CCccccCCC-HHHHHHHHHHHHHcCCEEEEeccccccccCCCC
Q 045431 194 ---NGF-------FPDLST-----VARTDIIFFCSP-NNPTGAAAT-REQLTRLVQFAKDNGSIIVYDSAYALYISDDNP 256 (433)
Q Consensus 194 ---~~~-------~~~~~~-----~~~~~~i~l~~p-~nPtG~~~~-~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~ 256 (433)
++. ...+++ .++..+.+++.| +++.|.+.+ .+.+++|.++|++||+++|.||++..|...+..
T Consensus 194 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~ 273 (460)
T PRK06541 194 ELGDDPEAFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEM 273 (460)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchh
Confidence 000 001111 123445666778 899998765 889999999999999999999999777444432
Q ss_pred CcccccCCCCcceEEEeccccccccccc-ceeeeeccccccccCCcchhHHHHH----HHhhccCCCcHHHHHHHHHhcC
Q 045431 257 RSIFEIPGAKEVAIETSSFSKYAGFTGV-RLGWTVIPKELLFSDGFPVAKDFNR----IVCTCFNGASNISQAGGLACLS 331 (433)
Q Consensus 257 ~~~~~~~~~~~~vi~i~S~sK~~~~~G~-r~G~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~q~~~~~~l~ 331 (433)
.....++-.+| ++ +|+|.++ .|+ ++|+++++++++ +.+.. +....+.+.++++.+++.+.++
T Consensus 274 ~a~~~~gv~PD-iv---t~gK~l~-~G~~pigav~~~~~i~--------~~~~~~~~~~~~~~T~~gnp~~~aaala~l~ 340 (460)
T PRK06541 274 FGCERFGYVPD-II---TCAKGIT-SGYSPLGAMIASDRLF--------EPFLDGPTMFLHGYTFGGHPVSAAVALANLD 340 (460)
T ss_pred hhhhhcCCCCC-EE---Eeccccc-CCccceeEEEEcHHHH--------HHhhcCCCccccCCCCCCCHHHHHHHHHHHH
Confidence 22222222234 23 5899998 887 999999998885 33321 1223455577888888887776
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHhhc-CCee---ecCCCccEEEEECCCC-------Ch--------HHHHHHHHHcC
Q 045431 332 PEGFKAVHEVIGFYKENTDIIVETFNSL-GFKV---YGGKNAPYVWVQFPGR-------SS--------WDVFSEILEKT 392 (433)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~---~~~~~g~~~~~~~~~~-------~~--------~~~~~~l~~~~ 392 (433)
.... +.+.++++++.+++.+.|+++ ...+ +.. .|.++-+.+... .. ..+...++ ++
T Consensus 341 ~l~~---~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg-~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~ 415 (460)
T PRK06541 341 IFER---EGLLDHVRDNEPAFRATLEKLLDLPIVGDVRG-DGYFYGIELVKDKATKETFTDDESERLLRGFLSPALF-EA 415 (460)
T ss_pred HHHh---ccHHHHHHHHHHHHHHHHHHhhcCCCeEEEEe-cceEEEEEEecCcccccCCcchhhhhhHHHHHHHHHH-hC
Confidence 3211 345677788888888888775 2222 222 455666665310 00 12334444 56
Q ss_pred CeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 393 HVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 393 gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
||.+.+. +.+.+.+||+. ..+++++++++++|.+++
T Consensus 416 Gi~~~~~----~~g~~~lrl~Ppl~~t~~~id~~~~~l~~~l 453 (460)
T PRK06541 416 GLYCRAD----DRGDPVVQLAPPLISGQEEFDEIEQILRSVL 453 (460)
T ss_pred CeEEEec----CCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 9999763 12346899994 579999999999998876
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.8e-17 Score=154.98 Aligned_cols=221 Identities=19% Similarity=0.164 Sum_probs=137.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHHHHhcCCCCEEEEeCCCChhhhhhHHHh-CCccccc
Q 045431 98 YSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIM-GQTGEFQ 176 (433)
Q Consensus 98 ~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~~ 176 (433)
+..|+. +-...|++.++++. +. +..+++++| +.++.++..+++|||+|++++|.|++....+... ...+
T Consensus 44 y~r~~~-p~~~~Le~~la~l~----g~-~~al~~~SG-~~Al~~~l~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~g--- 113 (380)
T PRK06176 44 YSRSGN-PTRFALEELIADLE----GG-VKGFAFASG-LAGIHAVFSLFQSGDHVLLGDDVYGGTFRLFDKVLVKNG--- 113 (380)
T ss_pred ccCCCC-hhHHHHHHHHHHHh----CC-CCEEEECCH-HHHHHHHHHHcCCCCEEEEcCCChhHHHHHHHHHHHhcC---
Confidence 334432 34788899999886 53 345666666 5577776678899999999999998765444321 1111
Q ss_pred ccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCC
Q 045431 177 KDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNP 256 (433)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~ 256 (433)
.++..++..+...+...+ .+++++|++.+|+||||.+++ +++|.++|+++|+++|+|++|+..... .+
T Consensus 114 ------i~v~~vd~~d~e~l~~ai--~~~t~lV~lesP~Nptg~~~d---i~~I~~la~~~gi~vivD~t~a~~~~~-~p 181 (380)
T PRK06176 114 ------LSCTIIDTSDLSQIKKAI--KPNTKALYLETPSNPLLKITD---LAQCASVAKDHGLLTIVDNTFATPYYQ-NP 181 (380)
T ss_pred ------eEEEEcCCCCHHHHHHhc--CcCceEEEEECCCCCCceecC---HHHHHHHHHHcCCEEEEECCccccccC-Cc
Confidence 356655543211111111 357899999999999999988 778889999999999999999853222 12
Q ss_pred CcccccCCCCcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh
Q 045431 257 RSIFEIPGAKEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF 335 (433)
Q Consensus 257 ~~~~~~~~~~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~ 335 (433)
+ .. +..+++.|++|.++.+| .-.|+++++++.+ .+.+...+.......++....... .+.
T Consensus 182 --~-~~----gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~-------~~~~~~~~~~~G~~~~~~~~~l~~-----~gl 242 (380)
T PRK06176 182 --L-LL----GADIVVHSGTKYLGGHSDVVAGLVTTNNEAL-------AQEIAFFQNAIGGVLGPQDSWLLQ-----RGI 242 (380)
T ss_pred --c-cc----CCCEEEecCceeccCCccceeeEEEecHHHH-------HHHHHHHHHHhcCCCCHHHHHHHH-----hcc
Confidence 2 12 12388999999996444 3356777654333 244443333322223333322222 222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhc
Q 045431 336 KAVHEVIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 336 ~~~~~~~~~~~~~~~~l~~~l~~~ 359 (433)
+.+..+.++..++...+.+.|+++
T Consensus 243 ~tl~~R~~~~~~~a~~la~~L~~~ 266 (380)
T PRK06176 243 KTLGLRMEAHQKNALCVAEFLEKH 266 (380)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhC
Confidence 334555556667777788888775
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.5e-17 Score=160.70 Aligned_cols=348 Identities=13% Similarity=0.103 Sum_probs=208.8
Q ss_pred HHHhcCCCCceEEecCCC--CCC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEE
Q 045431 55 AHMLKYPDAEVISLGIGD--TTE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFV 131 (433)
Q Consensus 55 ~~~~~~~~~~~i~l~~g~--~~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~ 131 (433)
......+++..+|+..|. ..+ ..+|.+.+++.+++.+.. ....|.. .+.+..+|+.|....+...+.+++
T Consensus 74 ~~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~l~---~~~~~~~----~~~~~~lae~L~~~~p~~~~~v~f 146 (459)
T PRK11522 74 NTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQP---LHSQELL----DPLRAMLAKTLAALTPGKLKYSFF 146 (459)
T ss_pred EEEEECCCCEEEECCcCHHhhhcCCCCHHHHHHHHHHHhhCc---ccccccC----CHHHHHHHHHHHHhCCCCCCEEEE
Confidence 334455677889987763 322 468999999999997642 1222222 344455555554322333468999
Q ss_pred cCChHHHHHHHHHh---cC--C-CCEEEEeCCCChhhhhhHHHhCCccccc-ccccccceEEEeecCccCCcccCCCC--
Q 045431 132 SDGAKCDISRLQIV---FG--S-NVTMAVQDPSYPAYVDSSVIMGQTGEFQ-KDAEKYGKIEYMRCTAENGFFPDLST-- 202 (433)
Q Consensus 132 ~~G~~~al~~l~~l---~~--~-gd~Vl~~~p~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-- 202 (433)
++++++|.+....+ .. + ...|+..+.+|++.............+. .++.....+..+|.++...+...++.
T Consensus 147 ~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~ 226 (459)
T PRK11522 147 CNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSECK 226 (459)
T ss_pred eCCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCCCHHHHHHHHHHhh
Confidence 99999998863222 22 2 2468888888888654433332211111 11111122333433221111111111
Q ss_pred --CCCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccc
Q 045431 203 --VARTDIIFFCSP-NNPTGAA-ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKY 278 (433)
Q Consensus 203 --~~~~~~i~l~~p-~nPtG~~-~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~ 278 (433)
..++.+ ++..| +.-.|.. .+.+.++++.++|++||+++|.||++..+...|.......+.-.+| ++ +++|.
T Consensus 227 ~~~~~iAa-vIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PD-iv---t~gK~ 301 (459)
T PRK11522 227 KTGDDVAA-VILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPD-IL---CLAKA 301 (459)
T ss_pred ccCCcEEE-EEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhhhhccCCCCC-EE---Eechh
Confidence 123444 44555 5556764 4677899999999999999999999987655444322222322344 22 78999
Q ss_pred ccccc-cceeeeeccccccccCCcchhHHHH--HHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHH
Q 045431 279 AGFTG-VRLGWTVIPKELLFSDGFPVAKDFN--RIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVET 355 (433)
Q Consensus 279 ~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 355 (433)
+| .| +.+|.+++++++. +.+. .....++.+.++++.+++.+.|+.... +.+.++.+++.+++.+.
T Consensus 302 lg-gG~~Pigav~~~~~i~--------~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~---~~l~~~~~~~g~~l~~~ 369 (459)
T PRK11522 302 LG-GGVMPIGATIATEEVF--------SVLFDNPFLHTTTFGGNPLACAAALATINVLLE---QNLPAQAEQKGDYLLDG 369 (459)
T ss_pred hh-CCCccceeEEEcHHHH--------HHhccCCcccCCCCCCCHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHHHH
Confidence 98 78 6999999988774 3332 123445566688888888888763322 34566777777777777
Q ss_pred Hhhc--CCe-e---ecCCCccEEEEECCCCC-hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe--eccChhHHHHHHH
Q 045431 356 FNSL--GFK-V---YGGKNAPYVWVQFPGRS-SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS--AFGHRGNVLEACK 426 (433)
Q Consensus 356 l~~~--g~~-~---~~~~~g~~~~~~~~~~~-~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~ 426 (433)
|+++ ... + +. ..|.++.+.+.... ...+...+++ +||.+.+.. .+.+.+|+. +..++++++++++
T Consensus 370 L~~l~~~~~~~i~~Vr-G~Gl~~giel~~~~~~~~i~~~l~~-~Gvl~~~~~----~~~~~lr~~Ppl~~t~~~id~~l~ 443 (459)
T PRK11522 370 FRQLAREYPDLVQEAR-GKGMLMAIEFVDNEIGYNFASEMFR-QRVLVAGTL----NNAKTIRIEPPLTLTIEQCEQVLK 443 (459)
T ss_pred HHHHHHhCCCceeeEE-eceeEEEEEecCchHHHHHHHHHHH-CCeEEEecC----CCCCEEEEECCccCCHHHHHHHHH
Confidence 7664 222 1 22 24677777776422 3345555554 599997532 234689998 4669999999999
Q ss_pred HHHHhh
Q 045431 427 RFKHLY 432 (433)
Q Consensus 427 ~l~~~l 432 (433)
+|.+++
T Consensus 444 ~l~~~l 449 (459)
T PRK11522 444 AARKAL 449 (459)
T ss_pred HHHHHH
Confidence 998875
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.6e-17 Score=156.49 Aligned_cols=160 Identities=18% Similarity=0.193 Sum_probs=112.2
Q ss_pred CCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHh-CCccccccccccc
Q 045431 105 QGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIM-GQTGEFQKDAEKY 182 (433)
Q Consensus 105 ~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~ 182 (433)
+...+|++.+|++. +. +..++++++++++.+ +..++++||+|+++.+.|.+....+... ...+
T Consensus 58 pt~~~Le~~lA~l~----g~--~~~l~~ssG~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~g--------- 122 (425)
T PRK06084 58 PTNDVLEQRVAALE----GG--VGALAVASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIG--------- 122 (425)
T ss_pred chHHHHHHHHHHHh----CC--CceeEehhHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhcccce---------
Confidence 45678999999886 42 345566777788887 6788999999999999998655544322 1111
Q ss_pred ceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCccccc
Q 045431 183 GKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEI 262 (433)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~ 262 (433)
.++..++..+...+...+ .+++++|++++|+||||.+++ +++|.++|+++|++||+|++|+..... .++ ..
T Consensus 123 i~v~~~d~~d~e~le~ai--~~~tklV~lesp~NPtG~v~d---l~~I~~la~~~~i~vVvD~a~a~~~~~---~p~-~~ 193 (425)
T PRK06084 123 IETRFAAHDDIAALEALI--DERTKAVFCESIGNPAGNIID---IQALADAAHRHGVPLIVDNTVATPVLC---RPF-EH 193 (425)
T ss_pred eEEEEECCCCHHHHHHHh--ccCCcEEEEeCCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccC---Chh-hc
Confidence 244444432111111111 257899999999999999998 788999999999999999999842211 111 11
Q ss_pred CCCCcceEEEecccccccccccceeeeecc
Q 045431 263 PGAKEVAIETSSFSKYAGFTGVRLGWTVIP 292 (433)
Q Consensus 263 ~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~ 292 (433)
+..+++.|++|.++.+|.++|.+++.
T Consensus 194 ----gaDivv~S~tK~l~G~g~~~gG~v~~ 219 (425)
T PRK06084 194 ----GADIVVHSLTKYIGGHGTSIGGIVVD 219 (425)
T ss_pred ----CCCEEEECchhcccccccceeEEEEe
Confidence 12389999999998888999877764
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.6e-17 Score=146.07 Aligned_cols=317 Identities=15% Similarity=0.129 Sum_probs=192.3
Q ss_pred EEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHH
Q 045431 66 ISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQI 144 (433)
Q Consensus 66 i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~ 144 (433)
++|.+... ..+.+++++++.++-. .....|+.+.-...+.+.+++.+ +. +.++++.++|++..+ |..
T Consensus 2 ~~f~SDn~-~g~~~~m~eam~~a~~-----~~~~~YG~D~~~~~~e~~~ae~~----g~--~a~~Fv~sGT~aN~lal~~ 69 (342)
T COG2008 2 IDFRSDNV-AGPTPEMREALAAANA-----VGDDVYGEDPTTNALEQRIAELF----GK--EAALFVPSGTQANQLALAA 69 (342)
T ss_pred CccccCcc-CCCCHHHHHHHHhccc-----cCCCCCCCCHHHHHHHHHHHHHh----CC--ceEEEecCccHHHHHHHHH
Confidence 34444332 2456788888888653 33446765555555555555544 65 677777777777776 888
Q ss_pred hcCCCCEEEEeCCCChhhhh--hHHHhCCcccccccccccceEEEeecCc--cCCcccC-CCC--------CCCccEEEE
Q 045431 145 VFGSNVTMAVQDPSYPAYVD--SSVIMGQTGEFQKDAEKYGKIEYMRCTA--ENGFFPD-LST--------VARTDIIFF 211 (433)
Q Consensus 145 l~~~gd~Vl~~~p~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~--------~~~~~~i~l 211 (433)
.++||+.|++..-.|-...+ ....++ ++..++..+ ++-+.++ ++. ...+.++++
T Consensus 70 ~~~~~~~vi~~~~aHi~~~E~Ga~~~~~-------------~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~ 136 (342)
T COG2008 70 HCQPGESVICHETAHIYTDECGAPEFFG-------------GGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVL 136 (342)
T ss_pred hcCCCCeEEEeccccceecccCcHHHHc-------------CCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEE
Confidence 99999999998887754332 223333 223333332 2222221 111 134455555
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccc--cccCCCCCcccccCCCCcceEEEecccccccccccceeee
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYAL--YISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWT 289 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~--~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l 289 (433)
.|++|--|+++|.+++++|.++|++||++|..|.+--. ....+ .+.+++...-| ++.-++||..+.|+ |.|
T Consensus 137 e~~~te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg--~~~~~~~~~~D--~v~~~~tK~g~~~~---gAi 209 (342)
T COG2008 137 ENTATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALG--VALKTIKSYVD--SVSFCLTKGGGAPV---GAI 209 (342)
T ss_pred eeccCCCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcC--CCHHHHHhhCC--EEEEecccCCccee---eeE
Confidence 56666789999999999999999999999999987442 22222 44555543233 44557899887555 654
Q ss_pred -eccccccccCCcchhHHHHHHH--hhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeec
Q 045431 290 -VIPKELLFSDGFPVAKDFNRIV--CTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYG 365 (433)
Q Consensus 290 -~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~ 365 (433)
+++.+++ +++..++ ......-+.+..++...+|++..+ .....+-.+..+.|.+.|+.. |+++..
T Consensus 210 v~gn~~~~--------~~a~~~rK~~Ggl~~k~r~laA~~~~~l~~~~~---~~~~~Han~mA~~La~~~~~~~G~~~~~ 278 (342)
T COG2008 210 VFGNRDFA--------KRARRWRKRAGGLMRKARFLAAQGLYALEDDVW---RLAADHANAMAARLAEGLEAKPGVKLAF 278 (342)
T ss_pred EEcCHHHH--------HHHHHHHHHhcccHhhhhHHHHHHHHHHhccHH---HHHHHHHHHHHHHHHHhhhhcCCceecc
Confidence 4555554 4443333 222222344444556667765433 222333444588899999965 999988
Q ss_pred CCCccEEEEECCCCC-hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 366 GKNAPYVWVQFPGRS-SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 366 ~~~g~~~~~~~~~~~-~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
|..++.++++++... ........+...|+.+.+++ ..+|+. +..+++++++++..++.++
T Consensus 279 ~~~tN~vf~~l~~~~i~~l~~~~~~~~~~~~~~~~~-------~~vRfvts~a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 279 PVETNMVFVRLPESAIEALRLAGALFYRGVLIGAHG-------EIVRFVTSWATSEEDVDELVAAIKALL 341 (342)
T ss_pred CCcccEEEEECChHHHHHHHhhchhheeeeeccCCC-------ceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence 889999999998411 11111112223355543321 368888 4668999999999998765
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-16 Score=150.58 Aligned_cols=219 Identities=16% Similarity=0.180 Sum_probs=138.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhH----HHhCCcc
Q 045431 99 SGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSS----VIMGQTG 173 (433)
Q Consensus 99 ~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~ 173 (433)
..|+ -.| .+.++++++.+... ...++.|++++ +++|+.+ +..++++||+|++++|.|+++...+ +..|
T Consensus 56 y~Ys-R~g-nPt~~~Le~~la~l-e~~~~~v~~sS-G~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~G--- 128 (395)
T PRK05967 56 YTYG-TRG-TPTTDALCKAIDAL-EGSAGTILVPS-GLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLG--- 128 (395)
T ss_pred CccC-CCC-ChHHHHHHHHHHHH-hCCCCEEEECc-HHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcC---
Confidence 3464 223 34444444444321 22445666666 6788886 6889999999999999999977544 4445
Q ss_pred cccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccC
Q 045431 174 EFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISD 253 (433)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~ 253 (433)
.++..++.+....+...+ .+++++|++++|+||++. ..++++|+++|+++|+++|+|++|+...+.
T Consensus 129 ---------i~v~~vd~~~~e~l~~al--~~~TklV~lesPsNP~l~---v~dl~~I~~la~~~g~~vvVD~t~a~p~~~ 194 (395)
T PRK05967 129 ---------VEVEYYDPEIGAGIAKLM--RPNTKVVHTEAPGSNTFE---MQDIPAIAEAAHRHGAIVMMDNTWATPLYF 194 (395)
T ss_pred ---------eEEEEeCCCCHHHHHHhc--CcCceEEEEECCCCCCCc---HHHHHHHHHHHHHhCCEEEEECCccCceec
Confidence 366666543211111111 367999999999999765 666999999999999999999999853221
Q ss_pred CCCCcccccCCCCcceEEEecccccccc-cccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCc
Q 045431 254 DNPRSIFEIPGAKEVAIETSSFSKYAGF-TGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSP 332 (433)
Q Consensus 254 ~~~~~~~~~~~~~~~vi~i~S~sK~~~~-~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~ 332 (433)
.++ .+ +-.|++.|.+|.++- ++.-.|+++.+++.. +.+...........++.. +..++
T Consensus 195 ---~pl-~~----GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~~--------~~l~~~~~~~G~~~~p~d---a~l~~-- 253 (395)
T PRK05967 195 ---RPL-DF----GVDISIHAATKYPSGHSDILLGTVSANEKCW--------PQLLEAHGTLGLCAGPDD---TYQIL-- 253 (395)
T ss_pred ---Chh-Hc----CCCEEEEecccccCCCCCeeEEEEEcCHHHH--------HHHHHHHHHcCCCCCHHH---HHHHH--
Confidence 111 12 223899999998751 235578777665542 334333332223334443 22232
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHhhc
Q 045431 333 EGFKAVHEVIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~l~~~l~~~ 359 (433)
.+.+.+.-+.++..++...+.+.|+++
T Consensus 254 rgl~Tl~lR~~~~~~na~~lA~~L~~h 280 (395)
T PRK05967 254 RGLRTMGIRLEHHRKSALEIARWLEGR 280 (395)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHhC
Confidence 344556777777888888899999887
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.2e-17 Score=155.93 Aligned_cols=323 Identities=12% Similarity=0.063 Sum_probs=192.8
Q ss_pred EEecCCCCCCCChHH-HHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCC-CCcEEEcC-ChHHHHHH-
Q 045431 66 ISLGIGDTTEPIPEV-ITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIE-EGDIFVSD-GAKCDISR- 141 (433)
Q Consensus 66 i~l~~g~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~-~~~i~~~~-G~~~al~~- 141 (433)
+.|..|. ...++. +++++.+..... ......-..-..+.|+.+++++ +++ +++|++++ |++.++++
T Consensus 14 ~~f~~Gp--~~~~~~~v~~a~~~~~~~~----~hr~~~f~~~~~~~r~~l~~l~----~~~~~~~v~~~~gs~T~~~~~~ 83 (378)
T PRK03080 14 PRFSSGP--CKKRPGWQLEALADALLGR----SHRQKPVKALLKRVIEGTRELL----SLPEGYEVGIVPGSDTGAWEMA 83 (378)
T ss_pred CCcCCCC--cCCChHHHHHHHHhhhccc----CcCCHHHHHHHHHHHHHHHHHh----CCCCCceEEEECCchHHHHHHH
Confidence 3344443 345556 888888654310 0101101234456666666665 764 45798875 88999997
Q ss_pred HHHhcCC-CCEEEEeCCCChhhhh--hHHHhCCcccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCcc
Q 045431 142 LQIVFGS-NVTMAVQDPSYPAYVD--SSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPT 218 (433)
Q Consensus 142 l~~l~~~-gd~Vl~~~p~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPt 218 (433)
+..++++ ++.|+. .-.|+.-.. ..+..|. .++..++.+.. ...+++....+++|.+++.+|.|
T Consensus 84 ~~~l~~~~~~~vi~-~g~f~~~~~~~~~~~~g~-----------~~v~~~~~~~g--~~~d~~~i~~~~~V~~~h~~t~t 149 (378)
T PRK03080 84 LWSLLGARRVDHLA-WESFGSKWATDVVKQLKL-----------EDPRVLEADYG--SLPDLSAVDFDRDVVFTWNGTTT 149 (378)
T ss_pred HHhcCCCCcceEEE-eCHHHHHHHHHHHhhcCC-----------CCceEeccCCC--CCCCHhhcCCCCCEEEEecCCcc
Confidence 5777774 444444 444444211 1133442 15555555432 22334333346678888999999
Q ss_pred ccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecccccccc
Q 045431 219 GAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFS 298 (433)
Q Consensus 219 G~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~ 298 (433)
|..++ +++|++ +++|+++|+|.+++.... +..+..+ .+++.|.+|+++ +...+|+++++++.+.+
T Consensus 150 G~~~p---i~~I~~--~~~g~~~vVDa~qs~G~~---pidv~~i------D~~~~s~~K~l~-~P~G~g~l~v~~~~~~~ 214 (378)
T PRK03080 150 GVRVP---VARWIG--ADREGLTICDATSAAFAL---PLDWSKL------DVYTFSWQKVLG-GEGGHGMAILSPRAVER 214 (378)
T ss_pred ceecc---chhhcc--ccCCCeEEEecccccccC---CCCHHHC------cEEEEehhhhCC-CCCceEEEEECHHHHHh
Confidence 99999 666666 788999999999884221 3333332 388999999985 32348999999887632
Q ss_pred CCcchh-----------H---HHH-HHHhhccCCCcHHHH---HHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcC
Q 045431 299 DGFPVA-----------K---DFN-RIVCTCFNGASNISQ---AGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLG 360 (433)
Q Consensus 299 ~~~~~~-----------~---~~~-~~~~~~~~~~~~~~q---~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 360 (433)
..+... . ... +....+.+.++.... .+++.++...+ .++++.++.++..+++.+.|++.+
T Consensus 215 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~g--G~e~i~~r~~~l~~~l~~~l~~~~ 292 (378)
T PRK03080 215 LESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIG--GLDALIARTAANASVLYDWAEKTP 292 (378)
T ss_pred hhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHhCC
Confidence 111100 0 011 111112233343333 33444554331 257888889999999999999885
Q ss_pred -Ceeec--C--CCccEEEEECCC---CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHH
Q 045431 361 -FKVYG--G--KNAPYVWVQFPG---RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKH 430 (433)
Q Consensus 361 -~~~~~--~--~~g~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~ 430 (433)
+.+.. + .++..+.+.+++ ....++...++++ |+.+..|... . ..+.+|+|+ +++.+|++.+++.|++
T Consensus 293 ~~~~~~~~~~~~s~~i~~~~~~~~~~~~~~~~~~~l~~~-~i~v~~g~~~-~-~~~~vRis~~~~~t~~di~~l~~al~~ 369 (378)
T PRK03080 293 WATPLVADPATRSNTSVTLDFVDAQAAVDAAAVAKLLRE-NGAVDIEPYR-D-APNGLRIWCGPTVEPADVEALTPWLDW 369 (378)
T ss_pred CcccccCCccccCccEEEEEcCCchHHHHHHHHHHHHHc-CCeecccccc-C-CCCcEEEecCCCCCHHHHHHHHHHHHH
Confidence 55542 1 123456667765 2334566666665 8888776432 1 347899994 6799999999999988
Q ss_pred hh
Q 045431 431 LY 432 (433)
Q Consensus 431 ~l 432 (433)
++
T Consensus 370 ~~ 371 (378)
T PRK03080 370 AF 371 (378)
T ss_pred HH
Confidence 75
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.1e-17 Score=141.10 Aligned_cols=326 Identities=18% Similarity=0.195 Sum_probs=209.6
Q ss_pred CCceEEecCCCC-CCCChHHHHHHHHHHHhhcccCCCCCCCCCCCC----CHHHHHHHHHHHhccCCCCCCcEEEcCChH
Q 045431 62 DAEVISLGIGDT-TEPIPEVITSALAKRSYALSTQEGYSGYGAEQG----EKPLRAAIASTFYKDLGIEEGDIFVSDGAK 136 (433)
Q Consensus 62 ~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g----~~~lr~~la~~l~~~~~~~~~~i~~~~G~~ 136 (433)
+.++++|+.+++ .+...|++.++-++++.+++ .+..+-.-.-| ...|.+.||++ .-.+|.|+..++..
T Consensus 66 ~k~ilnFcaNnYLGLsshPeii~a~~~aleeyG--aGlssvrfIcGtq~iHk~LE~kiAqf-----h~rED~ilypscfd 138 (417)
T KOG1359|consen 66 DKKILNFCANNYLGLSSHPEIINAGQKALEEYG--AGLSSVRFICGTQDIHKLLESKIAQF-----HGREDTILYPSCFD 138 (417)
T ss_pred ccceeeecccccccccCChHHHHHHHHHHHHhC--CCccceeEEecchHHHHHHHHHHHHH-----hCCCceEEeccccc
Confidence 457899998886 46788999999999999876 33332111333 35566666666 44667788777777
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC--CCCccEEEEcCC
Q 045431 137 CDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST--VARTDIIFFCSP 214 (433)
Q Consensus 137 ~al~~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~p 214 (433)
+...++.+++.|.|.|+-++..|.+..+.+++..+.+. + .+ ..+...+.. ..+-++|+....
T Consensus 139 ANag~feail~pedAvfSDeLNhASIIdGirLckry~h----------~---dv---~~l~~~l~~a~k~r~klv~TDg~ 202 (417)
T KOG1359|consen 139 ANAGAFEAILTPEDAVFSDELNHASIIDGIRLCKRYRH----------V---DV---FDLEHCLISACKMRLKLVVTDGV 202 (417)
T ss_pred cchHHHHHhcChhhhhhccccccchhhhhhHHHhhhcc----------c---hh---HHHHHHHHHhhhheEEEEEecce
Confidence 77777888899999999999999998888777663221 1 00 011111111 124454443344
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCC-CCcceEEEeccccccc-ccccceeeeecc
Q 045431 215 NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPG-AKEVAIETSSFSKYAG-FTGVRLGWTVIP 292 (433)
Q Consensus 215 ~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~-~~~~vi~i~S~sK~~~-~~G~r~G~l~~~ 292 (433)
-...|-+.| +++|.++++|||.++++||+|+.+.++.......+..+ ..+..+..++++|.+| +.| ||..+|
T Consensus 203 FSMDGdiaP---l~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga~G---Gyttgp 276 (417)
T KOG1359|consen 203 FSMDGDIAP---LEEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGASG---GYTTGP 276 (417)
T ss_pred eccCCCccc---HHHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCCCC---CCccCC
Confidence 566787777 88899999999999999999998666644433443322 2344588899999987 455 999999
Q ss_pred ccccccCCcchhHHHHHHH-hhccC-CCcH--H-HHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCC
Q 045431 293 KELLFSDGFPVAKDFNRIV-CTCFN-GASN--I-SQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGK 367 (433)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~--~-~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~ 367 (433)
.+++ .-+++.- ...+. ..++ + ....+..++... .......+.+.+++++..+..|+.+.+.
T Consensus 277 ~~li--------~llrqr~RpylFSnslppavV~~a~ka~dllm~s-----~~~i~~~~a~~qrfr~~me~aGftIsg~- 342 (417)
T KOG1359|consen 277 KPLI--------SLLRQRSRPYLFSNSLPPAVVGMAAKAYDLLMVS-----SKEIQSRQANTQRFREFMEAAGFTISGA- 342 (417)
T ss_pred hhHH--------HHHHhcCCceeecCCCChhhhhhhHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHhcCceecCC-
Confidence 9995 3333211 11111 1121 1 111222222211 3445566778888888888889998763
Q ss_pred CccEEEEECCC-CChHHHHHHHHHcCCeEecCCCCCC--CCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 368 NAPYVWVQFPG-RSSWDVFSEILEKTHVVTTPGSGFG--PGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 368 ~g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~--~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
.-+.+-+-+.. ..+.....++++. ||.|.. ..|. |.+...+|+.+ ..++++++++++++.++.
T Consensus 343 ~hPI~pv~lGda~lA~~~ad~lLk~-Gi~Vig-fs~PvVP~gkariRVqiSAaHt~edid~~i~Af~~vg 410 (417)
T KOG1359|consen 343 SHPICPVMLGDARLASKMADELLKR-GIYVIG-FSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFSEVG 410 (417)
T ss_pred CCCccceecccHHHHHHHHHHHHhc-CceEEe-ecCCcCCCCceEEEEEEehhcCHHHHHHHHHHHHHHH
Confidence 33444444442 2345677788876 999963 3332 34555677775 458999999999998864
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.6e-16 Score=153.55 Aligned_cols=351 Identities=12% Similarity=0.074 Sum_probs=202.3
Q ss_pred HHHHHHhcCCCCceEEecCCCC--CC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCC-CC
Q 045431 52 RKAAHMLKYPDAEVISLGIGDT--TE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIE-EG 127 (433)
Q Consensus 52 ~~~~~~~~~~~~~~i~l~~g~~--~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~-~~ 127 (433)
..+......+++..||+..|.- .+ ..+|.+.+++.+++.+... ....+.. .+....+++.|.+..+.. .+
T Consensus 31 a~G~~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~~~~--~~~~~~~----~~~~~~lae~L~~~~p~~~~~ 104 (445)
T PRK08593 31 GYGATLTDVDGKTYIDLLASASSQNVGHAPPRVVEAIKAQADKFIH--YTPAYMY----HEPLVRLAKKLCELAPGDFEK 104 (445)
T ss_pred eeeCEEEeCCCCEEEECCccHHhhcCCCCCHHHHHHHHHHHHhccC--ccccccC----CHHHHHHHHHHHHhCCCCCCC
Confidence 3344444566788999966642 22 3689999999999875421 1111112 233344444444322322 25
Q ss_pred cEEEcCChHHHHHHHHH---hcCCCCEEEEeCCCChhhhhhHHHh-CCcccc-cccccccceEEEeecCccCC-----c-
Q 045431 128 DIFVSDGAKCDISRLQI---VFGSNVTMAVQDPSYPAYVDSSVIM-GQTGEF-QKDAEKYGKIEYMRCTAENG-----F- 196 (433)
Q Consensus 128 ~i~~~~G~~~al~~l~~---l~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~-~~~~~~~~~~~~~~~~~~~~-----~- 196 (433)
.|+++++++++...... ......+|+..+.+|++.......+ +...-+ ..++.....+..+|..+... .
T Consensus 105 ~v~f~~SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 184 (445)
T PRK08593 105 RVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPD 184 (445)
T ss_pred EEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCCc
Confidence 89999999999886322 2233457888888888765333322 211100 00111112233333221100 0
Q ss_pred ---c----cCCC-------CCCCccEEEEcCCCCccccC-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccc
Q 045431 197 ---F----PDLS-------TVARTDIIFFCSPNNPTGAA-ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFE 261 (433)
Q Consensus 197 ---~----~~~~-------~~~~~~~i~l~~p~nPtG~~-~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~ 261 (433)
. ..++ ...++.+|++-..++..|.. .+++.+++|.++|++||+++|.||++..+...+.......
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~ 264 (445)
T PRK08593 185 ANFVEEYLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISH 264 (445)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHHHHHh
Confidence 0 0011 01345555543336667876 6899999999999999999999999987755543222222
Q ss_pred cCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHH
Q 045431 262 IPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEV 341 (433)
Q Consensus 262 ~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~ 341 (433)
+.-.+| +.+++|.++ .|+++|+++++++++ +.+.......+.+.++++++++.+.++.... +++
T Consensus 265 ~gv~pD----i~t~gK~l~-~G~p~gav~~~~~i~--------~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~---~~l 328 (445)
T PRK08593 265 FNITPD----LMSFGKSLA-GGMPMSAIVGRKEIM--------ESLEAPAHLFTTGANPVSCAAALATIDMIED---ESL 328 (445)
T ss_pred cCCCCC----Eeeeccccc-CCcccEEEEEcHHHH--------hhhccCCCCCCCCCCHHHHHHHHHHHHHHHh---ccH
Confidence 222234 337899998 889999999998875 3332222334556788888888887763221 234
Q ss_pred HHHHHHHHHHHHHHHhhc----CC-eeecCCCccEEEEECCCC------C---hHHHHHHHHHcCCeEecCCCCCCCCCC
Q 045431 342 IGFYKENTDIIVETFNSL----GF-KVYGGKNAPYVWVQFPGR------S---SWDVFSEILEKTHVVTTPGSGFGPGGE 407 (433)
Q Consensus 342 ~~~~~~~~~~l~~~l~~~----g~-~~~~~~~g~~~~~~~~~~------~---~~~~~~~l~~~~gi~v~~g~~f~~~~~ 407 (433)
.++.+++.+++.+.|+++ ++ .-+. ..|.++.+.+... + ...+...++ ++||.+.+. ..
T Consensus 329 ~~~~~~~g~~l~~~L~~l~~~~~~v~~vr-G~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~-~~Gv~~~~~------~~ 400 (445)
T PRK08593 329 LQRSAEKGEYARKRFDQWVSKYNFVGDVR-GYGLSIGIDIVSDKKLKTRDNEAALKICNYCF-EHGVVIIAV------AG 400 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEEEe-ccceEEEEEEecCCCcCCCcHHHHHHHHHHHH-HCCeEEecc------CC
Confidence 555566666666666543 22 1122 2345555555310 1 234555555 459998653 13
Q ss_pred CeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 408 GFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 408 ~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
+.+|++ +..+++++++++++|.+++
T Consensus 401 ~~lr~~p~l~~t~~~id~~~~~l~~~l 427 (445)
T PRK08593 401 NVLRFQPPLVITYEQLDTALNTIEQAF 427 (445)
T ss_pred CEEEEECCCccCHHHHHHHHHHHHHHH
Confidence 579988 4569999999999998875
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.5e-16 Score=150.43 Aligned_cols=219 Identities=13% Similarity=0.089 Sum_probs=142.8
Q ss_pred CCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhh----HHHhCCcccccccc
Q 045431 105 QGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDS----SVIMGQTGEFQKDA 179 (433)
Q Consensus 105 ~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~----~~~~g~~~~~~~~~ 179 (433)
+-...|.+.+|++. +. +..++++++++|+.+ +.+++++||+|+++.++|.+.... +...|
T Consensus 61 Ptv~~lE~~la~le----g~--~~av~~~SG~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~G--------- 125 (432)
T PRK06702 61 PTLAAFEQKLAELE----GG--VGAVATASGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLG--------- 125 (432)
T ss_pred cHHHHHHHHHHHHh----CC--CcEEEECCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHHHCC---------
Confidence 35678888888885 33 457889999999986 678899999999999999876665 45566
Q ss_pred cccceEEEeecCcc-CCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCc
Q 045431 180 EKYGKIEYMRCTAE-NGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRS 258 (433)
Q Consensus 180 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~ 258 (433)
+++.++....+ ..+... ..+++|+|++.+|+||++.+.+ +++|+++|+++|+++|+|++|+. | .
T Consensus 126 ---i~v~~vd~~~d~~~l~~~--I~~~Tk~I~~e~pgnP~~~v~D---i~~I~~iA~~~gi~livD~T~~t------P-~ 190 (432)
T PRK06702 126 ---IDVTFFNPNLTADEIVAL--ANDKTKLVYAESLGNPAMNVLN---FKEFSDAAKELEVPFIVDNTLAT------P-Y 190 (432)
T ss_pred ---CEEEEECCCCCHHHHHHh--CCcCCeEEEEEcCCCccccccC---HHHHHHHHHHcCCEEEEECCCCc------h-h
Confidence 36666654211 111111 1368999998899999999998 88999999999999999999862 1 1
Q ss_pred ccccCCCCcceEEEecccc-----cccccccce-----eeeeccccccccCC--------------cchhH-HHHHHHhh
Q 045431 259 IFEIPGAKEVAIETSSFSK-----YAGFTGVRL-----GWTVIPKELLFSDG--------------FPVAK-DFNRIVCT 313 (433)
Q Consensus 259 ~~~~~~~~~~vi~i~S~sK-----~~~~~G~r~-----G~l~~~~~~~~~~~--------------~~~~~-~~~~~~~~ 313 (433)
+...- ..+-.|++.|+|| ..+++|.++ +|...+...+.... ..+.. ........
T Consensus 191 ~~~pl-~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (432)
T PRK06702 191 LCQAF-EHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQLLRD 269 (432)
T ss_pred hCChh-hcCCCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchhhHHHHHHHHHHHH
Confidence 11100 0112399999999 555666665 45544322221000 00000 11111222
Q ss_pred ccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc
Q 045431 314 CFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 314 ~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 359 (433)
.....+++....+...|+ .+..+.++..++...+.+.|+++
T Consensus 270 ~g~~~sp~~a~l~~rgL~-----Tl~lR~~r~~~Na~~la~~L~~~ 310 (432)
T PRK06702 270 YGNCMSPFNAYISNIGLE-----TLHLRMERHSENALAVAKWLADH 310 (432)
T ss_pred ccCCCCHHHHHHHHhccC-----cHHHHHHHHHHHHHHHHHHHHhC
Confidence 234566666665555554 34555666678999999999987
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.3e-17 Score=149.48 Aligned_cols=350 Identities=12% Similarity=0.151 Sum_probs=211.6
Q ss_pred HHHHHHHHhcCCCCceEEecCCCCC---CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCC
Q 045431 50 ARRKAAHMLKYPDAEVISLGIGDTT---EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEE 126 (433)
Q Consensus 50 ~~~~~~~~~~~~~~~~i~l~~g~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~ 126 (433)
.+.++....+.+++..||+..+.-+ -..+|.+.+++.+++.+- ..|+.+ .++.-.+|+.+.+.++ ..
T Consensus 40 ~~g~Ga~l~DvDGn~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l~~G------~~fg~P---te~Ei~~Aell~~~~p-~~ 109 (432)
T COG0001 40 ERGKGAYLTDVDGNEYIDYVLGWGPLILGHAHPAVVEAVQEQLERG------LSFGAP---TELEVELAELLIERVP-SI 109 (432)
T ss_pred EeccCCeEEeCCCCEeeehhccCcccccCCCCHHHHHHHHHHHHhc------CCCCCC---CHHHHHHHHHHHHhcC-cc
Confidence 3445555666778889999888754 236788999999999752 345433 3455555555544333 34
Q ss_pred CcEEEcCChHHHHH-HH--HHhcCCCCEEEEeCCCChhhhhhHHH-hCCcccc-----cc---cccccceEEEeecCccC
Q 045431 127 GDIFVSDGAKCDIS-RL--QIVFGSNVTMAVQDPSYPAYVDSSVI-MGQTGEF-----QK---DAEKYGKIEYMRCTAEN 194 (433)
Q Consensus 127 ~~i~~~~G~~~al~-~l--~~l~~~gd~Vl~~~p~~~~~~~~~~~-~g~~~~~-----~~---~~~~~~~~~~~~~~~~~ 194 (433)
|.|-+++++|+|.. ++ .+-....|+|+..+-||++..+.+.. +| .+.- .. .......+..+|.++..
T Consensus 110 e~vrfvnSGTEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~ag-sg~~t~g~p~s~Gvp~~~a~~ti~~~yND~~ 188 (432)
T COG0001 110 EKVRFVNSGTEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAG-SGAATLGSPSSPGVPADVAKHTLVLPYNDLE 188 (432)
T ss_pred cEEEEecchhHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcC-cCcccCCCCCCCCCChhhhccEEEecCCCHH
Confidence 88989988888854 43 33455668999999999887665543 22 1110 00 00001123334443322
Q ss_pred CcccCCCCC-CCccEEEEcCC--CCccccCC-CHHHHHHHHHHHHHcCCEEEEeccccccccC-CCCCcccccCCCCcce
Q 045431 195 GFFPDLSTV-ARTDIIFFCSP--NNPTGAAA-TREQLTRLVQFAKDNGSIIVYDSAYALYISD-DNPRSIFEIPGAKEVA 269 (433)
Q Consensus 195 ~~~~~~~~~-~~~~~i~l~~p--~nPtG~~~-~~~~~~~i~~~a~~~~~~li~De~~~~~~~~-~~~~~~~~~~~~~~~v 269 (433)
.+...++.. .++.+|+ +.| .| .|.+. .++.+++|.++|++||+++|.||+...|... +....+..+. +|
T Consensus 189 al~~~~~~~g~~IAaVI-vEPv~gn-~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~~~gi~--PD-- 262 (432)
T COG0001 189 ALEEAFEEYGDDIAAVI-VEPVAGN-MGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQGYYGVE--PD-- 262 (432)
T ss_pred HHHHHHHHcCCcEEEEE-eccccCC-CCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCcccccccCcC--cc--
Confidence 222222222 3556555 455 55 56644 5668899999999999999999999887655 3334444432 34
Q ss_pred EEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-h-HHHHHHHHHHH
Q 045431 270 IETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-K-AVHEVIGFYKE 347 (433)
Q Consensus 270 i~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~-~~~~~~~~~~~ 347 (433)
+.+|.|.+| .|+.+|.+.++.+++.. ......+....+...++++..|..+.++.... + ..+++.+.-.+
T Consensus 263 --lttlGKiIG-GGlP~ga~gGr~eiM~~-----~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~~~~y~~l~~~~~~ 334 (432)
T COG0001 263 --LTTLGKIIG-GGLPIGAFGGRAEIMEQ-----LAPLGPVYQAGTLSGNPLAMAAGLATLEELMTEEGVYERLDALGER 334 (432)
T ss_pred --hhhhhhhhc-CCcceeeeccHHHHHhh-----hCCCCCccccCCCCCcHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 558999998 99999999999888622 11222334445556788888888877763221 1 12333333333
Q ss_pred HHHHHHHHHhhcCCeeecC-CCccEEEEECCC--C------------ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEE
Q 045431 348 NTDIIVETFNSLGFKVYGG-KNAPYVWVQFPG--R------------SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRV 412 (433)
Q Consensus 348 ~~~~l~~~l~~~g~~~~~~-~~g~~~~~~~~~--~------------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi 412 (433)
.++-+.+.+.++|+.+... .+++|- +.+.. . .-..++..++++ ||.+.|+.. +..+ +
T Consensus 335 L~~gl~~~~~~~g~~~~v~~~gsm~~-i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~~-GV~l~ps~~-----ea~f-l 406 (432)
T COG0001 335 LAEGLRAAAERHGIPLTVNRVGSMFG-IFFTEEGVRNYADAKRSDVERFAKFFHHLLNR-GVYLAPSQF-----EAGF-L 406 (432)
T ss_pred HHHHHHHHHHHhCCCeEEeeecceEE-EEecCCCCCCHHHHHhhchHHHHHHHHHHHhC-CcccCCccc-----ccee-e
Confidence 3344444455567766433 244432 22221 0 123456666665 999988642 2222 6
Q ss_pred eeccChhHHHHHHHHHHHhh
Q 045431 413 SAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 413 ~~~~~~~~l~~~l~~l~~~l 432 (433)
|...++++|++.++++.+++
T Consensus 407 S~ahte~di~~~~~a~~~~~ 426 (432)
T COG0001 407 STAHTEEDIDRTLEAADEAF 426 (432)
T ss_pred ecccCHHHHHHHHHHHHHHH
Confidence 77889999999999998765
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.6e-16 Score=148.53 Aligned_cols=320 Identities=13% Similarity=0.135 Sum_probs=195.4
Q ss_pred CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCH---HHHHHHHHHHhccCCCC-CCcEEEc-CChHHHHHH-HHHhcCC
Q 045431 75 EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEK---PLRAAIASTFYKDLGIE-EGDIFVS-DGAKCDISR-LQIVFGS 148 (433)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~---~lr~~la~~l~~~~~~~-~~~i~~~-~G~~~al~~-l~~l~~~ 148 (433)
...|+.+++++...+.++. ..+...+....-.+ ++-+.+.+.+.+-++.+ ..+|+++ ++++.++++ +..++.+
T Consensus 12 ~~~p~~V~~a~~~~~~~~~-~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl~~~ 90 (360)
T PRK05355 12 AMLPEEVLEQAQQELLDWN-GSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNLLGG 90 (360)
T ss_pred CCCCHHHHHHHHHHhhccc-cCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHhcCCC
Confidence 4689999999999875432 12222232222223 34344444444434653 3456655 556777887 6889999
Q ss_pred CCEEEEeCCCChhh--hhhHHHhCCcccccccccccceEEEeecCccCCc--ccCCCC---CCCccEEEEcCCCCccccC
Q 045431 149 NVTMAVQDPSYPAY--VDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGF--FPDLST---VARTDIIFFCSPNNPTGAA 221 (433)
Q Consensus 149 gd~Vl~~~p~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~i~l~~p~nPtG~~ 221 (433)
||++++...+..+. ...++..|. . ..+..++..+. ..++++ .+++++|.+++..+.||+.
T Consensus 91 g~~~l~i~~G~fg~r~~~~a~~~g~------------~-~~~~~~~~~g~~~~~~~~~~~l~~~~~~V~~th~eTstGv~ 157 (360)
T PRK05355 91 GKKADYVDTGSWSKKAIKEAKKYGE------------V-NVAASSEDDGFTYIPPLDEWQLSDDAAYVHYTSNETIDGTE 157 (360)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhCC------------c-eEEecccccCCCCCCChhhccCCCCCCEEEEccCCCcceEe
Confidence 99998887777664 344555552 2 23332211111 112111 2478999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCc
Q 045431 222 ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGF 301 (433)
Q Consensus 222 ~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~ 301 (433)
.+ .+++| +|+++|+|.+.+.. ..+..+..+ + +++.|..|.+|.+| +|+++++++.+.+..+
T Consensus 158 ~~--~i~~i------~g~l~vVDavss~g---~~~idv~~~----d--~~~~ssqK~lgP~G--lg~l~~s~~~l~~~~~ 218 (360)
T PRK05355 158 FH--ELPDT------GDVPLVADMSSDIL---SRPIDVSKF----G--LIYAGAQKNIGPAG--LTIVIVREDLLGRALP 218 (360)
T ss_pred cC--ccccc------CCCcEEEEcCcccc---CccCCHHHc----c--EEEEeccccccCCc--eEEEEECHHHHhhccc
Confidence 84 25554 89999999998832 123434332 2 77888899998767 8999999988744222
Q ss_pred chh--HHHHH-HH-hhccCCCcHHHHHHHHHhcCcCChh-HHHHHHHHHHHHHHHHHHHHhhcCCe-e-ec--CCCccEE
Q 045431 302 PVA--KDFNR-IV-CTCFNGASNISQAGGLACLSPEGFK-AVHEVIGFYKENTDIIVETFNSLGFK-V-YG--GKNAPYV 372 (433)
Q Consensus 302 ~~~--~~~~~-~~-~~~~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~g~~-~-~~--~~~g~~~ 372 (433)
... -++.. .. .....+++.....+..++|+..... .++++.++.++..+.+++.|+++++. . .. ......+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~v~ 298 (360)
T PRK05355 219 SIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSDFYRNPVAPEDRSRMNV 298 (360)
T ss_pred CCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCChhhcCCcEE
Confidence 111 11111 11 1122334444444444444422123 36888999999999999999998742 2 11 1223456
Q ss_pred EEECCCC-ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 373 WVQFPGR-SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 373 ~~~~~~~-~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
.+.+++. ...++...+. ++|+.+.+|.. ..+.+|+|+ +++.+|++.+++.|++++
T Consensus 299 sf~~~~~~~~~~~~~~~~-~~Gi~~~~~~~----~~g~vRiS~~~~nt~eei~~l~~~l~~~~ 356 (360)
T PRK05355 299 PFTLADEELDKKFLAEAK-AAGLVGLKGHR----SVGGMRASIYNAMPLEGVQALVDFMKEFE 356 (360)
T ss_pred EEEcCChHHHHHHHHHHH-HCCCcccCCCC----ccCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 6777753 2234445544 45999877652 246899996 568999999999999875
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-15 Score=145.49 Aligned_cols=303 Identities=15% Similarity=0.110 Sum_probs=183.6
Q ss_pred hHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHh-cCCCCEEEEe
Q 045431 78 PEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIV-FGSNVTMAVQ 155 (433)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l-~~~gd~Vl~~ 155 (433)
.+.-.+++.+.+.. .. |.......+|++++++++ +.+ +.++++|+++++.+ +.++ +++||+|+++
T Consensus 9 ~~~~~~~v~~~~~~-----~~--~~~g~~~~~le~~la~~~----g~~--~~v~~~sgt~al~~~l~al~~~~Gd~Viv~ 75 (380)
T TIGR03588 9 DQDDIDAVVEVLKS-----DF--LTQGPTVPAFEEALAEYV----GAK--YAVAFNSATSALHIACLALGVGPGDRVWTT 75 (380)
T ss_pred CHHHHHHHHHHHhc-----CC--ccCChhHHHHHHHHHHHH----CCC--eEEEEcCHHHHHHHHHHHcCCCCCCEEEeC
Confidence 44456677776652 11 223446799999999998 543 45566678889887 5666 7899999999
Q ss_pred CCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCC---C--C----CCccEEEEcCCCCccccCCCHHH
Q 045431 156 DPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS---T--V----ARTDIIFFCSPNNPTGAAATREQ 226 (433)
Q Consensus 156 ~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~----~~~~~i~l~~p~nPtG~~~~~~~ 226 (433)
.|+|.++...+...| .+++.++.+++. +..+++ + . +++++|++ .|++|...+
T Consensus 76 ~~~~~~~~~~~~~~G------------~~~~~~~~~~~~-~~~d~~~l~~~i~~~~~~~t~~v~~---~~~~G~~~~--- 136 (380)
T TIGR03588 76 PITFVATANCALYCG------------AKVDFVDIDPDT-GNIDEDALEKKLAAAKGKLPKAIVP---VDFAGKSVD--- 136 (380)
T ss_pred CcchHHHHHHHHHcC------------CEEEEEecCCCc-CCcCHHHHHHHhhcccCCCceEEEE---eCCCCccCC---
Confidence 999999988888888 478888876432 222221 1 2 46788775 456898766
Q ss_pred HHHHHHHHHHcCCEEEEecccccc-ccCCCCCcccccCCCCcceEEEeccc--ccccccccceeeeeccccccccCCcch
Q 045431 227 LTRLVQFAKDNGSIIVYDSAYALY-ISDDNPRSIFEIPGAKEVAIETSSFS--KYAGFTGVRLGWTVIPKELLFSDGFPV 303 (433)
Q Consensus 227 ~~~i~~~a~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~~vi~i~S~s--K~~~~~G~r~G~l~~~~~~~~~~~~~~ 303 (433)
+++|.++|++||++||+|++++.. .+++.+ +... ...| +.+.||+ |.++ .| ..|+++.+++.+
T Consensus 137 ~~~i~~l~~~~~~~lI~D~a~a~g~~~~~~~--~g~~-~~~d--~~~~S~~~~K~~~-~~-~GG~v~~~~~~~------- 202 (380)
T TIGR03588 137 MQAIAALAKKHGLKIIEDASHALGAEYGGKP--VGNC-RYAD--ATVFSFHPVKIIT-TA-EGGAVTTNDEEL------- 202 (380)
T ss_pred HHHHHHHHHHcCCEEEEECCCcccCccCCEe--CCCc-cccc--eEEEecCCCCccc-cc-CceEEEECCHHH-------
Confidence 788899999999999999999853 233322 2111 0123 6666765 8886 33 457777665443
Q ss_pred hHHHHHHHhhcc-------------------------CCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhh
Q 045431 304 AKDFNRIVCTCF-------------------------NGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNS 358 (433)
Q Consensus 304 ~~~~~~~~~~~~-------------------------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 358 (433)
.+.++....... ...+.+..+.+..-| +.+++..++-+++.+++.+.|.+
T Consensus 203 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL-----~~l~~~~~~r~~~~~~~~~~L~~ 277 (380)
T TIGR03588 203 AERMRLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQL-----KKLDRFVAKRREIAARYDRLLKD 277 (380)
T ss_pred HHHHHHHHHCCCCCCcccccccccCcceeeeeccccccCccHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcC
Confidence 233332221110 011222222122212 23466666677777788888887
Q ss_pred c-CCeeecCC-C---ccE-EEEECC---CCChHHHHHHHHHcCCeEecCCCCC-------CC--C-C---------CCeE
Q 045431 359 L-GFKVYGGK-N---APY-VWVQFP---GRSSWDVFSEILEKTHVVTTPGSGF-------GP--G-G---------EGFI 410 (433)
Q Consensus 359 ~-g~~~~~~~-~---g~~-~~~~~~---~~~~~~~~~~l~~~~gi~v~~g~~f-------~~--~-~---------~~~i 410 (433)
. ++....+. + .++ ..+.++ +....++...| +++||.++..... .. . . ...+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~l~~~L-~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l 356 (380)
T TIGR03588 278 LPYFTPLTIPLGSKSAWHLYPILLDQEFGCTRKEVFEAL-RAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEI 356 (380)
T ss_pred CCCccCCCCCCCCEeEEEEEEEEECCcCCCCHHHHHHHH-HHCCCCcccCCcccccChhhhccCCcCCCcHHHHHHhceE
Confidence 6 34433221 1 122 223333 23455666665 5569988744311 00 0 0 1457
Q ss_pred EEee--ccChhHHHHHHHHHHHhh
Q 045431 411 RVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 411 Ri~~--~~~~~~l~~~l~~l~~~l 432 (433)
++.+ ..++++++..++.|+++|
T Consensus 357 ~lP~~~~l~~~dv~~i~~~l~~~~ 380 (380)
T TIGR03588 357 SLPLHPALTLEQQQRVVETLRKVL 380 (380)
T ss_pred EcCCCCCCCHHHHHHHHHHHHHhC
Confidence 7765 348999999999999875
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-16 Score=138.62 Aligned_cols=317 Identities=17% Similarity=0.194 Sum_probs=204.0
Q ss_pred CCceEEecCCCCC-CCChHH---HHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEE--EcC
Q 045431 62 DAEVISLGIGDTT-EPIPEV---ITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIF--VSD 133 (433)
Q Consensus 62 ~~~~i~l~~g~~~-~~~~~~---~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~--~~~ 133 (433)
++.-++|+.|.+. ....|- +.+.....+.+. ...-+.|-|..|.+.++++.++.+-. -..+..+.++ -+-
T Consensus 29 ~p~KvnL~igAYRtd~g~PWvLPvVk~~e~~i~~d--~s~NHEYLpi~Gl~~F~~~A~el~lg~~s~a~kE~Rv~~vQsl 106 (410)
T KOG1412|consen 29 DPVKVNLGIGAYRTDDGKPWVLPVVKKAEKKIAND--QSLNHEYLPILGLPTFTKAATELLLGADSPAIKEDRVFGVQSL 106 (410)
T ss_pred CcceeecccceEEcCCCCeeEehhhhhhhhhccCc--hhccchhccccCchhhhhhhHHHhcCCCchhhhhccccceeec
Confidence 3345888888762 122222 222333333221 13345899999999999999998743 2223444432 223
Q ss_pred ChHHHHHH---HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccC-------CcccCCCCC
Q 045431 134 GAKCDISR---LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAEN-------GFFPDLSTV 203 (433)
Q Consensus 134 G~~~al~~---l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 203 (433)
+++.|+.+ +..-+-....|.+..|+|.+...+++.+|-.. +..++.=+.+ +++.+++..
T Consensus 107 sGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~nH~~if~~aGf~t-----------v~~Y~yWd~~~k~~d~e~~Lsdl~~A 175 (410)
T KOG1412|consen 107 SGTGALRIAADFLATFYNKNTVYVSNPTWENHHAIFEKAGFTT-----------VATYPYWDAENKCVDLEGFLSDLESA 175 (410)
T ss_pred cccchhhhhHHHHHHhcccceeEecCCchhHHHHHHHHcCCce-----------eeeeeeecCCCceecHHHHHHHHhhC
Confidence 34444432 33333345679999999999999999998432 2222221111 223334444
Q ss_pred CCccEEEEcCC-CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccc---cCCCCcceEEEecccccc
Q 045431 204 ARTDIIFFCSP-NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFE---IPGAKEVAIETSSFSKYA 279 (433)
Q Consensus 204 ~~~~~i~l~~p-~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~---~~~~~~~vi~i~S~sK~~ 279 (433)
+.-..+++..+ |||||+-.+.|+++.|++..++.+.+.+.|-+|.+|..++....... +-....-++++-||+|.+
T Consensus 176 Pe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~e~fv~QSFaKNf 255 (410)
T KOG1412|consen 176 PEGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQGFELFVCQSFAKNF 255 (410)
T ss_pred CCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhcCCeEEEEhhhhhhc
Confidence 44455566655 99999999999999999999999999999999999877653222221 111123478999999999
Q ss_pred cccccceeeee--ccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh--h---HHHHHHHHHHHHHHHH
Q 045431 280 GFTGVRLGWTV--IPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF--K---AVHEVIGFYKENTDII 352 (433)
Q Consensus 280 ~~~G~r~G~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~--~---~~~~~~~~~~~~~~~l 352 (433)
|+-+-|+|-+. +.+.-. ...+...+..+.......++......+...|..... + .++.+..+++++|..|
T Consensus 256 GlYneRvGnltvv~~n~a~---i~~v~SQl~lviR~~~SNPPAyGArIV~kvL~tP~lre~W~~sik~MssRI~~MR~aL 332 (410)
T KOG1412|consen 256 GLYNERVGNLTVVVNNPAV---IAGVKSQLTLVIRSNWSNPPAYGARIVHKVLSTPELREQWIQSIKTMSSRIKKMRTAL 332 (410)
T ss_pred ccccccccceEEEecChhH---HHHHHHHHHHHHhhccCCCcchhhHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999643 333321 222334455555556666777777878888885544 2 3677777899999999
Q ss_pred HHHHhhcC----CeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecC
Q 045431 353 VETFNSLG----FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTP 398 (433)
Q Consensus 353 ~~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~ 398 (433)
++.|..++ |+-+..+.|+|-+-.+. + ..++.|.+++.|.+.+
T Consensus 333 rd~L~aL~TPGtWDHI~~QiGMFSyTGLt---p-~qV~~li~~h~vyLl~ 378 (410)
T KOG1412|consen 333 RDHLVALKTPGTWDHITQQIGMFSYTGLT---P-AQVDHLIENHKVYLLS 378 (410)
T ss_pred HHHHHhcCCCCcHHHHHhhccceeecCCC---H-HHHHHHHHhceEEEec
Confidence 99998873 44444567888765553 2 4567788888999865
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.1e-15 Score=147.52 Aligned_cols=354 Identities=10% Similarity=0.037 Sum_probs=202.6
Q ss_pred HHHHHHhcCCCCceEEecCCCC--C-CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCc
Q 045431 52 RKAAHMLKYPDAEVISLGIGDT--T-EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGD 128 (433)
Q Consensus 52 ~~~~~~~~~~~~~~i~l~~g~~--~-~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~ 128 (433)
.++......+++..||+..|.. . -..+|.+.+++.+++.+... .. ..|. . +....+|+.+.+..+. .+.
T Consensus 36 a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~-~~-~~~~-~----~~~~~lae~l~~~~~~-~~~ 107 (451)
T PRK07678 36 AEGAWVTDIQGNRYLDGMSGLWCVNVGYGRKELAEAAYEQLKTLSY-FP-LTQS-H----EPAIKLAEKLNEWLGG-EYV 107 (451)
T ss_pred eeeeEEEeCCCCEEEEccccHHhhcCCCCCHHHHHHHHHHHHhcCc-cc-cccC-C----HHHHHHHHHHHHhCCC-CCE
Confidence 4444455667788999876642 2 23678999999999876421 11 1121 1 2233444444432232 358
Q ss_pred EEEcCChHHHHHH-H---HHhc----CCC-CEEEEeCCCChhhhhhHHHhCCcccc-cccccccceEEEeecCccCCc--
Q 045431 129 IFVSDGAKCDISR-L---QIVF----GSN-VTMAVQDPSYPAYVDSSVIMGQTGEF-QKDAEKYGKIEYMRCTAENGF-- 196 (433)
Q Consensus 129 i~~~~G~~~al~~-l---~~l~----~~g-d~Vl~~~p~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~-- 196 (433)
+++++++++|... + .... ++| .+|+..+.+|++.............+ ..++.....+..++.......
T Consensus 108 v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (451)
T PRK07678 108 IFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPG 187 (451)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCccccccc
Confidence 9999999998875 3 1122 123 57888888888865433322211100 001111112222322110000
Q ss_pred -------cc----CCC-----C-CCCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCC
Q 045431 197 -------FP----DLS-----T-VARTDIIFFCSP-NNPTGAA-ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPR 257 (433)
Q Consensus 197 -------~~----~~~-----~-~~~~~~i~l~~p-~nPtG~~-~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~ 257 (433)
.. .++ . .+++.+|+ ..| +.-.|.+ .+++.++++.++|++||+++|.||++..|...|...
T Consensus 188 ~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi-~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~ 266 (451)
T PRK07678 188 IESEDIYDLECVKEIDRVMTWELSETIAAVI-MEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAF 266 (451)
T ss_pred cCChHHHHHHHHHHHHHHHHhcCCCceEEEE-EccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchhH
Confidence 00 011 1 13455544 456 4445655 577899999999999999999999998886655433
Q ss_pred cccccCCCCcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHH------HHhhccCCCcHHHHHHHHHhc
Q 045431 258 SIFEIPGAKEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNR------IVCTCFNGASNISQAGGLACL 330 (433)
Q Consensus 258 ~~~~~~~~~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~q~~~~~~l 330 (433)
....+.-.+| ++ +++|.+| .| +.+|.+++++++. +.+.. +...++.+.++++.+++.+.|
T Consensus 267 ~~~~~gv~PD-iv---t~gK~lg-gG~~Pi~av~~~~~i~--------~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l 333 (451)
T PRK07678 267 GFMNYGVKPD-II---TMAKGIT-SAYLPLSATAVKKEIY--------EAFKGKGEYEHFRHVNTFGGNPAACALALKNL 333 (451)
T ss_pred HHHhcCCCCC-EE---Eeecccc-cCCcceeEEEEcHHHH--------HHHhccCcccccccCCCCCcCHHHHHHHHHHH
Confidence 3333332345 23 6899998 77 6999999998874 33331 234566778899999888888
Q ss_pred CcCChhHHHHHHHHHHHHHHHHHHHHh----hcCCee-ecCCCccEEEEECCCC-------C---hHHHHHHHHHcCCeE
Q 045431 331 SPEGFKAVHEVIGFYKENTDIIVETFN----SLGFKV-YGGKNAPYVWVQFPGR-------S---SWDVFSEILEKTHVV 395 (433)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~l~~~l~----~~g~~~-~~~~~g~~~~~~~~~~-------~---~~~~~~~l~~~~gi~ 395 (433)
+.... +.+.++.++..+++.+.|+ ++++.. +. ..|.++-+.+... + ...+...++ ++||.
T Consensus 334 ~~l~~---~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vr-g~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~-~~Gv~ 408 (451)
T PRK07678 334 EIMEN---ENLIERSAQLGELLLEQLKEELGEHPLVGDIR-GKGLLVGIELVNDKETKEPADNDKVASVVAACK-EKGLI 408 (451)
T ss_pred HHHHh---CCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEE-eeceEEEEEEecCCcccCcCchHHHHHHHHHHH-HCCcE
Confidence 63221 2334445555555555553 333221 22 2455555665310 1 223444544 45999
Q ss_pred ecCCCCCCCCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 396 TTPGSGFGPGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 396 v~~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
+.+....-+...+.+||+ +..+++|+++++++|.+++
T Consensus 409 ~~~~g~~v~~~~~~lrl~Ppl~it~~eid~~~~~l~~~l 447 (451)
T PRK07678 409 IGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVGTLKTAL 447 (451)
T ss_pred EeecCccccCCCCEEEEECCCcCCHHHHHHHHHHHHHHH
Confidence 976322111234679998 4569999999999999876
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.6e-15 Score=142.08 Aligned_cols=331 Identities=8% Similarity=0.037 Sum_probs=197.0
Q ss_pred HhcCCCCceEEecCCCC--CC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcC
Q 045431 57 MLKYPDAEVISLGIGDT--TE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSD 133 (433)
Q Consensus 57 ~~~~~~~~~i~l~~g~~--~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~ 133 (433)
....+++..+|+..|.. .+ ..+|.+.+++.+++.+... ....| ......+|.+.++++. + .+.+++++
T Consensus 18 l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~--~~~~~-~~~~~~~la~~l~~~~----~--~~~v~~~~ 88 (364)
T PRK04013 18 VWDSQGRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLVV--AGPMF-EHEEKEEMLEELSKWV----N--YEYVYMGN 88 (364)
T ss_pred EEECCCCEEEEcccChhhccCCCCCHHHHHHHHHHHHhcCC--ccCCc-CCHHHHHHHHHHHhhc----C--CCEEEEeC
Confidence 44556778999977642 22 3668888999999876421 11123 2233344555555542 3 36899999
Q ss_pred ChHHHHHHHHHh--cCCC-CEEEEeCCCChhhhhhHHHhC-CcccccccccccceEEEeecCccCCcccCCCCCCCccEE
Q 045431 134 GAKCDISRLQIV--FGSN-VTMAVQDPSYPAYVDSSVIMG-QTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDII 209 (433)
Q Consensus 134 G~~~al~~l~~l--~~~g-d~Vl~~~p~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 209 (433)
++++|+.+...+ ...| ++|+..+.+|++......... .......++.....+..++.++...+...+ ..++.+|
T Consensus 89 SGseA~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i--~~~~aAv 166 (364)
T PRK04013 89 SGTEAVEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPFNDVEAAKEAI--TKETAAV 166 (364)
T ss_pred chHHHHHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecCCCHHHHHHHh--cCCcEEE
Confidence 999999863222 2244 899999999988653333221 111001111112233444433111111111 2467776
Q ss_pred EEcCCCCcccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceee
Q 045431 210 FFCSPNNPTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGW 288 (433)
Q Consensus 210 ~l~~p~nPtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~ 288 (433)
++...+...|. ..+.+.++++.++|++||+++|+||++..+ ..|.......+.-.+| +-+++|.+| .|+.+|.
T Consensus 167 ivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG~~~a~~~~gv~PD----iv~~gK~lg-gG~P~~a 240 (364)
T PRK04013 167 IFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGKFLAIEHYKVEPD----IVTMGKGIG-NGVPVSL 240 (364)
T ss_pred EEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCCchhHHHhcCCCCC----EEEeccccc-CCceeEE
Confidence 66443554555 456789999999999999999999999987 5554333333322344 335799998 7899999
Q ss_pred eeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCC
Q 045431 289 TVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKN 368 (433)
Q Consensus 289 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~ 368 (433)
++.+.++. . ....++++.++++.+++.+.|+....+ ++.++.++. + +.+..--+.-+. ..
T Consensus 241 ~~~~~~~~--------~----~~~~~T~~gnp~~~aaa~a~l~~i~~~---~l~~~~~~~---l-~~l~~~~v~~vR-G~ 300 (364)
T PRK04013 241 TLTNFDVE--------R----GKHGSTFGGNPLACKAVAVTLRILRRE---RLVEKAGEK---F-IEIKGERVVTTR-GR 300 (364)
T ss_pred EEeccccc--------C----CCcCCCCCcCHHHHHHHHHHHHHHHhc---cHHHHHHHH---H-HHhccCcceeee-eC
Confidence 98876651 1 134556678899998888887632221 112222221 1 122211111122 24
Q ss_pred ccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 369 APYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 369 g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
|+++-+.+.. ....+...+++ +|+.+.+. +.+.+||. +..+++++++++++|.+++
T Consensus 301 Gl~~gve~~~-~~~~i~~~~~~-~Gll~~~~------g~~vlr~~Ppl~it~~~i~~~~~~l~~~l 358 (364)
T PRK04013 301 GLMIGIVLKK-PVGKYVEELQN-RGYLVHTA------GQRVIRLLPPLIISKDTMEEAKSAIEGVI 358 (364)
T ss_pred cEEEEEEeCC-cHHHHHHHHHh-CCcEEeeC------CCCEEEEeCCcccCHHHHHHHHHHHHHHH
Confidence 6777777753 24455556555 59999653 24679999 5679999999999999876
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-15 Score=145.11 Aligned_cols=296 Identities=15% Similarity=0.100 Sum_probs=179.8
Q ss_pred HHHHHHHHHHHhccCCCC-CCcEEEcCChH-HHHHHHHHhcC----CCCEEEEeCCCChhhhhhHHHhCCcccccccccc
Q 045431 108 KPLRAAIASTFYKDLGIE-EGDIFVSDGAK-CDISRLQIVFG----SNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEK 181 (433)
Q Consensus 108 ~~lr~~la~~l~~~~~~~-~~~i~~~~G~~-~al~~l~~l~~----~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~ 181 (433)
..+...+.+++.+.+|++ .+..++++|++ .++.++...++ +||.|+++.-+|.+...++..+|
T Consensus 104 ~~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kAi~~~G----------- 172 (444)
T TIGR03531 104 YKLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAISTAG----------- 172 (444)
T ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHHHHHcC-----------
Confidence 344444444444434664 34588888888 46665444444 68999999999999999999999
Q ss_pred cceEEEeecC-ccCCcccCCCC-----CC---CccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEecccccccc
Q 045431 182 YGKIEYMRCT-AENGFFPDLST-----VA---RTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYIS 252 (433)
Q Consensus 182 ~~~~~~~~~~-~~~~~~~~~~~-----~~---~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~ 252 (433)
++++.++.. +++.+..+++. .+ +..++++++|+ |+...+.+++++|.++|++||+++|+|++|+....
T Consensus 173 -~~pv~Vd~~~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~--t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~ 249 (444)
T TIGR03531 173 -FEPRVIETVLDGDELTTDVEDIERAIEEIGPDNILCVLSTTS--CFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSN 249 (444)
T ss_pred -CeEEEeeeeecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCC--cCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcCh
Confidence 467777741 22344444332 12 45566666665 55555677899999999999999999999995211
Q ss_pred CCCCCcc--cccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhc
Q 045431 253 DDNPRSI--FEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACL 330 (433)
Q Consensus 253 ~~~~~~~--~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l 330 (433)
. ...+ .... ...-.+++.|++|++.++|+ .|.++++++.+ .+.+..... ....+.+.|.+...++
T Consensus 250 ~--~~~~~~~g~~-~Grad~vv~s~hK~l~~pg~-Gg~I~~~d~el-------~~~i~~~y~--g~~~~s~~~~~~~~ll 316 (444)
T TIGR03531 250 K--YMELINKAIK-VGRVDAVVSSTDKNFMVPVG-GAIIYSFDENF-------IQEISKSYP--GRASASPSLDVLITLL 316 (444)
T ss_pred h--hhhhhhcccc-ccCCCeEEEeCccCCCCCCC-EEEEEECCHHH-------HHHHHHhcc--CCCCChHHHHHHHHHH
Confidence 1 1111 1111 00113667899999987775 34444633332 244433221 1224456777666666
Q ss_pred CcCChhHHHHHHHHHHHHHHHHHHHHhhc----CCeeecC-CCccEEEEECC---CCChHHHHHHHHHcCCe----EecC
Q 045431 331 SPEGFKAVHEVIGFYKENTDIIVETFNSL----GFKVYGG-KNAPYVWVQFP---GRSSWDVFSEILEKTHV----VTTP 398 (433)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g~~~~~~-~~g~~~~~~~~---~~~~~~~~~~l~~~~gi----~v~~ 398 (433)
. .+.+.++++.++..++++++.+.|+++ |..+... ....-+.+.+. +.+...+-..|..+ +| .|.|
T Consensus 317 ~-~G~~g~~~li~~~~~~a~~l~~~L~~l~~~~~~~~~~~~~n~is~~~~~~~~~~~~~~~~g~~l~~~-~v~g~r~v~~ 394 (444)
T TIGR03531 317 S-LGSKGYLELLKERKEMYKYLKELLQKLAERHGERLLDTPENPISSAMTLSTLKGKDPTMLGSMLYSR-RVTGPRVVTN 394 (444)
T ss_pred H-hCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcEeecCCCCceeEEEecccccccCHHHHHHHHHhC-CCCCceeecC
Confidence 4 555778899999999999998888764 6666543 22233444444 33444444444433 55 2456
Q ss_pred CC-------CC---CCCCC----CeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 399 GS-------GF---GPGGE----GFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 399 g~-------~f---~~~~~----~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
|. .| +.+.+ .++-++ +..+.+|++..+++|.+++
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~~ 444 (444)
T TIGR03531 395 GDSKTVGGCEFKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKSL 444 (444)
T ss_pred CCceEECCEEeecccccccCCCchhHHHHHHhCCcHHHHHHHHHHHhhcC
Confidence 66 23 22111 144344 3558999999999998864
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.2e-15 Score=143.29 Aligned_cols=349 Identities=10% Similarity=0.059 Sum_probs=205.9
Q ss_pred HHHHHHhcCCCCceEEecCCCC--CC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCC-CCC
Q 045431 52 RKAAHMLKYPDAEVISLGIGDT--TE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGI-EEG 127 (433)
Q Consensus 52 ~~~~~~~~~~~~~~i~l~~g~~--~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~-~~~ 127 (433)
..+......+++..||+..|.. .+ ..++.+.+++.+++.+... .....|. .+....+|+.+....+- ..+
T Consensus 43 a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~-~~~~~~~-----~~~~~~lAe~L~~~~p~~~~~ 116 (441)
T PRK05769 43 GEGVWVEDVDGNVYLDFNAGIAVTNVGHAHPKVVKAVKEQAEKFLH-YSLTDFY-----YEPAVELAERLVEIAPGGFEK 116 (441)
T ss_pred cceEEEEeCCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhccC-ccCcccC-----CHHHHHHHHHHHHhCCCCCCC
Confidence 3344445566788999977753 22 3678899999999876321 1111121 23445556655432222 236
Q ss_pred cEEEcCChHHHHHH-H--HHhcCCCCEEEEeCCCChhhhhhHHHh-CCcccc-cccccccceEEEeecCcc-------CC
Q 045431 128 DIFVSDGAKCDISR-L--QIVFGSNVTMAVQDPSYPAYVDSSVIM-GQTGEF-QKDAEKYGKIEYMRCTAE-------NG 195 (433)
Q Consensus 128 ~i~~~~G~~~al~~-l--~~l~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~-~~~~~~~~~~~~~~~~~~-------~~ 195 (433)
.+++++++++|... + .......++|+..+-+|++.......+ +..... ..++.....+..++.... .+
T Consensus 117 ~v~f~~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (441)
T PRK05769 117 KVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIEN 196 (441)
T ss_pred EEEECCchHHHHHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCCc
Confidence 89999999999886 4 122234567888888888866443333 211110 111111122333333110 00
Q ss_pred c-------ccCCC--------CCCCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCc
Q 045431 196 F-------FPDLS--------TVARTDIIFFCSP-NNPTGAA-ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRS 258 (433)
Q Consensus 196 ~-------~~~~~--------~~~~~~~i~l~~p-~nPtG~~-~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~ 258 (433)
. ...++ ...++.+| +..| +.-.|.. .+.+.+++|.++|++||+++|.||++..+...+....
T Consensus 197 ~~~~~~~~~~~le~~~~~~~~~~~~iaav-i~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a 275 (441)
T PRK05769 197 PEECGNAVLDFIEDYLFKKLVPPEEVAAI-IVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFA 275 (441)
T ss_pred hHHHHHHHHHHHHHHHHhhccCCCceEEE-EECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccceeh
Confidence 0 00011 11344554 4466 4555664 4688999999999999999999999997755554332
Q ss_pred ccccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHH
Q 045431 259 IFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAV 338 (433)
Q Consensus 259 ~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~ 338 (433)
...+.-.+| ++ +|||.++ .|+++|++++++++. . +.......+.+.++++++++.+.|+.. +.
T Consensus 276 ~~~~gv~pD-iv---t~~K~l~-~G~p~gav~~~~~i~--------~-~~~~~~~~T~~g~p~~~aaa~a~L~~l--~~- 338 (441)
T PRK05769 276 IEHFGVEPD-II---TLAKAIA-GGLPLGAVIGRAELM--------F-LPPGSHANTFGGNPVAAAAALATLEEL--EE- 338 (441)
T ss_pred hhccCCCCC-EE---EEccccc-CCcccEEEEEehhhh--------h-cCCCCCCCCCCcCHHHHHHHHHHHHHH--HH-
Confidence 222322234 33 5899998 899999999988874 1 111123344456888888888887622 11
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC--Ceeec--CCCccEEEEECCCC-------ChHHHHHHHHHcCCeEecCCCCCCCCCC
Q 045431 339 HEVIGFYKENTDIIVETFNSLG--FKVYG--GKNAPYVWVQFPGR-------SSWDVFSEILEKTHVVTTPGSGFGPGGE 407 (433)
Q Consensus 339 ~~~~~~~~~~~~~l~~~l~~~g--~~~~~--~~~g~~~~~~~~~~-------~~~~~~~~l~~~~gi~v~~g~~f~~~~~ 407 (433)
++.++.+++.+++.+.|+++. ..+.. ...|.++-+.+... ....+...++ ++||.+.+. +.
T Consensus 339 -~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~Gil~~~~------~~ 410 (441)
T PRK05769 339 -GLLENAQKLGEYLRKELKELKEKYEFIGDVRGLGLMIGVELVKDRKEPDPKLRDKVLYEAF-KRGLLLLGA------GK 410 (441)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhCCCeeeeecceEEEEEEeccCCccccHHHHHHHHHHHH-hCCcEEecC------CC
Confidence 556677777777777776642 22211 12355666666321 1223444544 459998652 23
Q ss_pred CeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 408 GFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 408 ~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
+.+|++ +..+++++++++++|.+++
T Consensus 411 ~~lr~~p~l~~t~~~id~~~~~l~~~l 437 (441)
T PRK05769 411 SAIRIIPPLIITEEEADIGLEILEEAI 437 (441)
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 679998 4569999999999998876
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-15 Score=148.82 Aligned_cols=349 Identities=11% Similarity=0.071 Sum_probs=206.6
Q ss_pred HHHHHHhcCCCCceEEecCCCC--CC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCc
Q 045431 52 RKAAHMLKYPDAEVISLGIGDT--TE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGD 128 (433)
Q Consensus 52 ~~~~~~~~~~~~~~i~l~~g~~--~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~ 128 (433)
.++......+++..||+..|.. .+ ..+|.+.+++.+++.+... .....+. .+.+..+|+.+.+..+...+.
T Consensus 43 a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~-~~~~~~~-----~~~~~~lAe~L~~~~p~~~~~ 116 (453)
T PRK06943 43 GEGAWLYDRDGRRYLDAISSWWVNLFGHANPRINAALKDQLDTLEH-AMLAGCT-----HEPAIELAERLAALTGGTLGH 116 (453)
T ss_pred cccCEEEeCCCCEEEEcchHHHHhcCCCCCHHHHHHHHHHHHhcCC-ccccccC-----CHHHHHHHHHHHHhCCCCCCE
Confidence 3444445566788999976642 22 3679999999999876421 1111221 234455666554422333368
Q ss_pred EEEcCChHHHHHHHHHhc---------CCCCEEEEeCCCChhhhhhHHHhCCcccc-cccccccceEEEeecCccCCc--
Q 045431 129 IFVSDGAKCDISRLQIVF---------GSNVTMAVQDPSYPAYVDSSVIMGQTGEF-QKDAEKYGKIEYMRCTAENGF-- 196 (433)
Q Consensus 129 i~~~~G~~~al~~l~~l~---------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~-- 196 (433)
+++++++++|......+. ....+|+..+.+|++.......+.....+ ..++.....+..++.......
T Consensus 117 v~f~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 196 (453)
T PRK06943 117 AFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARP 196 (453)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCcccccc
Confidence 999999999988632221 12367898999998865332222211111 111111112222322111000
Q ss_pred -----------ccCCC----C-CCCccEEEEcCC--CCcccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCC
Q 045431 197 -----------FPDLS----T-VARTDIIFFCSP--NNPTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPR 257 (433)
Q Consensus 197 -----------~~~~~----~-~~~~~~i~l~~p--~nPtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~ 257 (433)
..+++ . ..++.+|++ .| +.-.|. ..+++.++++.++|++||+++|.||++..+...|...
T Consensus 197 ~~~~~~~~~~~~~~l~~~l~~~~~~iAAvii-EPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~f 275 (453)
T PRK06943 197 GETAADVAARALADVRRLFAERAGKIAALIV-EPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFF 275 (453)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCceEEEEE-eccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchh
Confidence 00111 1 134555554 55 566676 4588899999999999999999999999886655433
Q ss_pred cccccCCCCcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHH------HHhhccCCCcHHHHHHHHHhc
Q 045431 258 SIFEIPGAKEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNR------IVCTCFNGASNISQAGGLACL 330 (433)
Q Consensus 258 ~~~~~~~~~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~q~~~~~~l 330 (433)
....+.-.+| ++ +++|.++ .| +.+|.+++++++. +.+.. +...++.+.++++.+++.+.|
T Consensus 276 a~~~~gv~PD-iv---t~gKgl~-gG~~Pi~av~~~~ei~--------~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L 342 (453)
T PRK06943 276 ACEQAGVWPD-FL---CLSKGIS-GGYLPLSLVLSRDAIF--------AAFYDDDVTRGFLHSHSYTGNPLACRAALATL 342 (453)
T ss_pred HHHhCCCCCC-eE---eeehhhc-cCcccceEEEEcHHHH--------HhhcccCccCCccCCCCCCCCHHHHHHHHHHH
Confidence 3333333345 33 5799998 88 5999999998874 33321 224455667889988888887
Q ss_pred CcCChhHHHHHHHHHHHHHHHHHHHHhhc----CCeeecCCCccEEEEECC-CCC-----hHHHHHHHHHcCCeEecCCC
Q 045431 331 SPEGFKAVHEVIGFYKENTDIIVETFNSL----GFKVYGGKNAPYVWVQFP-GRS-----SWDVFSEILEKTHVVTTPGS 400 (433)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g~~~~~~~~g~~~~~~~~-~~~-----~~~~~~~l~~~~gi~v~~g~ 400 (433)
+.... +++.++.+++-+++.+.|+++ ++.-+. ..|+++-+.+. ..+ ...+...++ ++||.+.+.
T Consensus 343 ~~i~~---~~l~~~~~~~G~~l~~~L~~l~~~~~v~~vr-G~Gl~~gvel~~~~~~~~~~~~~i~~~~~-~~Gll~~~~- 416 (453)
T PRK06943 343 DLFAE---DDVLARNARKSARLRAALAPLAAHPQVRHLR-QRGTIFAFDVALDGDAARTFSRRFFEAAL-ERELLLRPI- 416 (453)
T ss_pred HHHHh---cCHHHHHHHHHHHHHHHHHHHhcCCCEEeEe-ccccEEEEEEccCCCcchHHHHHHHHHHH-HCCcEEEec-
Confidence 63221 234455555566666666553 232232 24566666664 111 223445555 459999753
Q ss_pred CCCCCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 401 GFGPGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 401 ~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
+ +.+||+ +..+++++++++++|.+++
T Consensus 417 -----g-~~l~~~Ppl~it~~eid~~~~~l~~al 444 (453)
T PRK06943 417 -----G-TTVYLMPPYVLDDDEIAWLAERTRATL 444 (453)
T ss_pred -----C-CEEEEeCCCcCCHHHHHHHHHHHHHHH
Confidence 1 359998 6789999999999998876
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-15 Score=148.01 Aligned_cols=350 Identities=7% Similarity=0.023 Sum_probs=203.7
Q ss_pred HHHHHHhcCCCCceEEecCCC--CCC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCc
Q 045431 52 RKAAHMLKYPDAEVISLGIGD--TTE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGD 128 (433)
Q Consensus 52 ~~~~~~~~~~~~~~i~l~~g~--~~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~ 128 (433)
..+......+++..+|+..|. ..+ ..+|.+.+++.+++.+... .....+ ......+|-+.+++.+ +...+.
T Consensus 33 a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~-~~~~~~-~~~~~~~lae~L~~~~----p~~~~~ 106 (429)
T PRK06173 33 ADGVMITLKDGRRLIDGMSSWWAALHGYNHPRLNAAATNQLAKMSH-IMFGGF-THEPAVELAQKLLEIL----PPSLNK 106 (429)
T ss_pred ceeeEEEcCCCCEEEEccchHHhccCCCCCHHHHHHHHHHHHhcCC-cccccc-CCHHHHHHHHHHHhhC----CCCcCE
Confidence 334444556677899987653 222 3678999999999876421 111112 2223334444444432 334578
Q ss_pred EEEcCChHHHHHHHHHh---c-----CC-CCEEEEeCCCChhhhhhHHHh-CCcccc-cccccccceEEEeecCccC---
Q 045431 129 IFVSDGAKCDISRLQIV---F-----GS-NVTMAVQDPSYPAYVDSSVIM-GQTGEF-QKDAEKYGKIEYMRCTAEN--- 194 (433)
Q Consensus 129 i~~~~G~~~al~~l~~l---~-----~~-gd~Vl~~~p~~~~~~~~~~~~-g~~~~~-~~~~~~~~~~~~~~~~~~~--- 194 (433)
+++++++++|++....+ . ++ ..+|+....+|++.......+ +....+ ..++.....+..+|.....
T Consensus 107 v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 186 (429)
T PRK06173 107 IFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSIKFGE 186 (429)
T ss_pred EEEeCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCcccch
Confidence 99999999998863222 1 13 357888888888853222111 211000 0011111112223221100
Q ss_pred C----cc----cCCCC-CCCccEEEEcCC--CCccccC-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCccccc
Q 045431 195 G----FF----PDLST-VARTDIIFFCSP--NNPTGAA-ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEI 262 (433)
Q Consensus 195 ~----~~----~~~~~-~~~~~~i~l~~p--~nPtG~~-~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~ 262 (433)
. .. ..++. ..++.+|+ ..| +.-.|.. .+++.++++.++|++||+++|.||++..+...|.......+
T Consensus 187 ~~~~~~l~~l~~~i~~~~~~iAAvi-~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~ 265 (429)
T PRK06173 187 EWNDEAIEPLQDLLEQKGDEIAALI-LEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFALEHA 265 (429)
T ss_pred hHHHHHHHHHHHHHHhCCCcEEEEE-EcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcchHHHhc
Confidence 0 00 00111 13455555 455 5666765 68889999999999999999999999776444433222223
Q ss_pred CCCCcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHH-----HHhhccCCCcHHHHHHHHHhcCcCChh
Q 045431 263 PGAKEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNR-----IVCTCFNGASNISQAGGLACLSPEGFK 336 (433)
Q Consensus 263 ~~~~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~q~~~~~~l~~~~~~ 336 (433)
.-.+| ++ +|+|.++ .| +.++.+++++++. +.+.. +...++.+.++++.+++.+.|+....
T Consensus 266 gv~PD-iv---~~gK~l~-gG~~p~~a~~~~~~i~--------~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~- 331 (429)
T PRK06173 266 GVVPD-IM---CIGKALT-GGYLTLSATITTEAIA--------QTICSGEAKCFMHGPTFMANPLACAIAAESIRLLLE- 331 (429)
T ss_pred CCCCC-EE---Eeehhhh-CCccccceEEecHHHH--------HHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHh-
Confidence 22344 22 4899997 78 4788888887764 33321 22334455678888888887763211
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-CCeeecC--CCccEEEEECCCC-ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEE
Q 045431 337 AVHEVIGFYKENTDIIVETFNSL-GFKVYGG--KNAPYVWVQFPGR-SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRV 412 (433)
Q Consensus 337 ~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~--~~g~~~~~~~~~~-~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi 412 (433)
+...++++++.+.+.+.|++. +...+.. ..|+++-+.+... ....+...++ ++||.+.+. + +.+||
T Consensus 332 --~~~~~~~~~~g~~l~~~L~~~~~~~~v~~vRg~Gl~~~iel~~~~~~~~i~~~l~-e~Gi~v~~~------g-~~l~~ 401 (429)
T PRK06173 332 --SPWQQNIQRIEAQLKQELAPAAEFDSVAEVRVLGAIGVVEMKEPVNMATLQPRFV-EHGIWVRPF------G-KLVYI 401 (429)
T ss_pred --CCHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEeCCcccHHHHHHHHH-HCCeEEEec------C-CEEEE
Confidence 234666777777777777754 3332221 2466666777532 3345555555 459999763 1 47999
Q ss_pred e--eccChhHHHHHHHHHHHhh
Q 045431 413 S--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 413 ~--~~~~~~~l~~~l~~l~~~l 432 (433)
. +..+++++++++++|.+++
T Consensus 402 ~Ppl~it~~ei~~~~~~l~~~l 423 (429)
T PRK06173 402 MPPFIISPDELSQLTSGLLRVL 423 (429)
T ss_pred eCCccCCHHHHHHHHHHHHHHH
Confidence 9 5679999999999999876
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.1e-15 Score=144.02 Aligned_cols=351 Identities=10% Similarity=0.040 Sum_probs=204.0
Q ss_pred HHHHHHhcCCCCceEEecCCCC--C-CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCc
Q 045431 52 RKAAHMLKYPDAEVISLGIGDT--T-EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGD 128 (433)
Q Consensus 52 ~~~~~~~~~~~~~~i~l~~g~~--~-~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~ 128 (433)
.++......+++..||+..|.. . -..+|.+.+++.+++.+.. .....|... +....+++.|.+..+...+.
T Consensus 42 ~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~ql~~~~--~~~~~~~~~----~~~~~lae~L~~~~p~~~~~ 115 (457)
T PRK05639 42 GFGALIEDVDGNVFIDFLAGAAAASTGYSHPKLVKAVQEQVALIQ--HSMIGYTHS----ERAIRVAEKLAEISPIENPK 115 (457)
T ss_pred eecCEEEeCCCCEEEECCcCHHhhccCCCCHHHHHHHHHHHHhcc--ccccCccCC----HHHHHHHHHHHhhCCCCcCE
Confidence 4444455667788999977742 2 2367899999999987542 111123222 33334444443322433468
Q ss_pred EEEcCChHHHHHH-H--HHhcCCCCEEEEeCCCChhhhhhHHHh-CCcccc-cccccccceEEEeecCccCC--c-----
Q 045431 129 IFVSDGAKCDISR-L--QIVFGSNVTMAVQDPSYPAYVDSSVIM-GQTGEF-QKDAEKYGKIEYMRCTAENG--F----- 196 (433)
Q Consensus 129 i~~~~G~~~al~~-l--~~l~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~-~~~~~~~~~~~~~~~~~~~~--~----- 196 (433)
+++++++++|... + ........+|+..+.+|++.......+ +..... ..++....++..+|...... +
T Consensus 116 v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 195 (457)
T PRK05639 116 VLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGY 195 (457)
T ss_pred EEEeCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCcccccccccccc
Confidence 9999999999886 3 222344567888888888865433332 211100 00111112344444321100 0
Q ss_pred -cc---------CCCC--------CCCccEEEEcCC-CCcccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCC
Q 045431 197 -FP---------DLST--------VARTDIIFFCSP-NNPTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNP 256 (433)
Q Consensus 197 -~~---------~~~~--------~~~~~~i~l~~p-~nPtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~ 256 (433)
.. .++. ..++.+|++ .| +...|. ..+.+.+++|.++|++||+++|.||++..|...|..
T Consensus 196 ~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~-EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~ 274 (457)
T PRK05639 196 EEPDELINRFLDYLENYVFSHVVPPDEVAALFA-EPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKW 274 (457)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEE-CCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchH
Confidence 00 0111 234555554 56 555676 457889999999999999999999999976554432
Q ss_pred CcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChh
Q 045431 257 RSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFK 336 (433)
Q Consensus 257 ~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~ 336 (433)
.....++-.+| ++ +|+|.++ .|+.+|.+++++++. + +.......+.+.++++.+++.+.|+....
T Consensus 275 ~a~~~~gv~PD-iv---~~gK~l~-gG~pi~av~~~~~i~--------~-~~~~~~~~T~~g~p~~~aaa~a~l~~l~~- 339 (457)
T PRK05639 275 FASEWFEVKPD-LI---IFGKGVA-SGMGLSGVIGRKELM--------D-LTSGSALLTPAANPVISAAAEATLEIIEE- 339 (457)
T ss_pred HHHHhcCCCCC-EE---Eechhhc-CCCcceeEEehHHHH--------h-hcCCCcccCCCcCHHHHHHHHHHHHHHHH-
Confidence 22222222344 33 3899998 899999999998885 2 11111223455778888878877763222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc----CCee-ecCCCccEEEEECCC-C---C---hHHHHHHHHHcCCeEecCCCCCCC
Q 045431 337 AVHEVIGFYKENTDIIVETFNSL----GFKV-YGGKNAPYVWVQFPG-R---S---SWDVFSEILEKTHVVTTPGSGFGP 404 (433)
Q Consensus 337 ~~~~~~~~~~~~~~~l~~~l~~~----g~~~-~~~~~g~~~~~~~~~-~---~---~~~~~~~l~~~~gi~v~~g~~f~~ 404 (433)
++..+..+++.+++.+.|+++ ++.. +. ..|.++.+.+.. . + ...+...++ ++|+.+.+..
T Consensus 340 --~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~Vr-G~Gl~~gve~~~~~~~~~~~~~~~~~~~~~-~~Gv~~~~~g---- 411 (457)
T PRK05639 340 --ENLLKNALKVGEFIKKRLLEMKESFEVIGDVR-GKGLMIGVEIVKENGKPDPELTGKICWRAF-ELGLILPSYG---- 411 (457)
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHHhCCCEEeec-cceeEEEEEEecCCCCCCHHHHHHHHHHHH-hCCeEEeecC----
Confidence 234455555666666666553 3211 22 245666666531 1 1 223444555 4599997641
Q ss_pred CCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 405 GGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 405 ~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
...+.+|+. +..+++++++++++|.+++
T Consensus 412 ~~~~~lr~~Ppl~it~~~id~~~~~l~~~l 441 (457)
T PRK05639 412 MFGNVIRITPPLVITKEIAEKGLEIMERAI 441 (457)
T ss_pred CCCCEEEEeCCCccCHHHHHHHHHHHHHHH
Confidence 124689999 4669999999999999876
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-16 Score=134.42 Aligned_cols=160 Identities=16% Similarity=0.114 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhh-hhHHHhCCcccccccccccceE
Q 045431 108 KPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYV-DSSVIMGQTGEFQKDAEKYGKI 185 (433)
Q Consensus 108 ~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~-~~~~~~g~~~~~~~~~~~~~~~ 185 (433)
.++++.+++++ +.+++++++++|+++++.+ +..+..++++|++++++|++.. ......| .++
T Consensus 3 ~~~~~~l~~~~----~~~~~~~~~~~~~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g------------~~~ 66 (170)
T cd01494 3 EELEEKLARLL----QPGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYWVAAELAG------------AKP 66 (170)
T ss_pred HHHHHHHHHHc----CCCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEeecccceehhhHHHhcC------------CEE
Confidence 57889999987 4678899999999999998 5666788999999999999988 6666666 467
Q ss_pred EEeecCccCCcccC---C---CCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcc
Q 045431 186 EYMRCTAENGFFPD---L---STVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSI 259 (433)
Q Consensus 186 ~~~~~~~~~~~~~~---~---~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~ 259 (433)
..++.+.......+ + ...++++++++++|+||+|..++. ++|.++|+++|+++|+|++|..+......
T Consensus 67 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~---~~l~~~~~~~~~~li~D~a~~~~~~~~~~--- 140 (170)
T cd01494 67 VPVPVDDAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPL---KEIRKIAKEYGILLLVDAASAGGASPAPG--- 140 (170)
T ss_pred EEeccCCCCccchhhhhhhhccccCceEEEEEecCcCCCCeEcCH---HHHHHHHHHcCCEEEEecccccccccccc---
Confidence 77776654332221 1 124678899999999999998884 88888899999999999999976654321
Q ss_pred cccCCCCcceEEEecccccccccccceeeeecc
Q 045431 260 FEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIP 292 (433)
Q Consensus 260 ~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~ 292 (433)
..... .+..+++.|++|.++ + .++|+++++
T Consensus 141 ~~~~~-~~~d~~~~s~~K~~~-~-~~~G~l~~~ 170 (170)
T cd01494 141 VLIPE-GGADVVTFSLHKNLG-G-EGGGVVIVK 170 (170)
T ss_pred ccccc-ccCCEEEEEcccccC-C-CceEEEEeC
Confidence 11111 234588899999997 3 679998763
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-15 Score=147.84 Aligned_cols=351 Identities=11% Similarity=0.092 Sum_probs=205.0
Q ss_pred HHHHHHhcCCCCceEEecCCCC--CC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCc
Q 045431 52 RKAAHMLKYPDAEVISLGIGDT--TE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGD 128 (433)
Q Consensus 52 ~~~~~~~~~~~~~~i~l~~g~~--~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~ 128 (433)
.++......+++..||+..|.. .+ ..+|++.+++.+++.+.......+.+ ..+.+..+|+.|....+.+.+.
T Consensus 35 a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~-----~~~~~~~lae~L~~~~p~~~~~ 109 (459)
T PRK05965 35 AKGATLTDASGHQLLDAFAGLWCVNVGYGQESIVEAAAEQMRELPYATGYFHF-----GSEPAIRLAAKLAERAPGSLNH 109 (459)
T ss_pred eeEeEEEECCCCEEEECcccHHhccCCCCCHHHHHHHHHHHHhcCCccccccc-----CCHHHHHHHHHHHhhCCCCcCE
Confidence 3344445566778999976643 22 35789999999998764210111122 1233344555554322334578
Q ss_pred EEEcCChHHHHHH-HH---Hhc---C-C-CCEEEEeCCCChhhhhhHHHhCCcccc-cccccccceEEEeecCc------
Q 045431 129 IFVSDGAKCDISR-LQ---IVF---G-S-NVTMAVQDPSYPAYVDSSVIMGQTGEF-QKDAEKYGKIEYMRCTA------ 192 (433)
Q Consensus 129 i~~~~G~~~al~~-l~---~l~---~-~-gd~Vl~~~p~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~------ 192 (433)
+++++++++|++. +. ... . + ..+|+..+.+|++.............+ ..++.....+..++...
T Consensus 110 v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (459)
T PRK05965 110 VYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPV 189 (459)
T ss_pred EEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCccccccc
Confidence 9999999999885 42 111 1 2 357888999998865332222211111 11111111122222211
Q ss_pred cCCcc-------cCC----CC--CCCccEEEEcCC-CCcccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCC
Q 045431 193 ENGFF-------PDL----ST--VARTDIIFFCSP-NNPTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPR 257 (433)
Q Consensus 193 ~~~~~-------~~~----~~--~~~~~~i~l~~p-~nPtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~ 257 (433)
.++.. ..+ +. ..++.+|++ .| +...|+ ..+++.++++.++|++||+++|.||+...|...|...
T Consensus 190 ~~~~~~~~~~~~~~l~~~i~~~~~~~iAAvIv-EPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~ 268 (459)
T PRK05965 190 GDDPQAIIAASVAALRAKVAELGADNVAAFFC-EPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLF 268 (459)
T ss_pred CCChHHHHHHHHHHHHHHHHhcCCCceEEEEE-eccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchhh
Confidence 00100 011 11 134555554 55 555676 4578899999999999999999999999886665543
Q ss_pred cccccCCCCcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHH-------HHhhccCCCcHHHHHHHHHh
Q 045431 258 SIFEIPGAKEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNR-------IVCTCFNGASNISQAGGLAC 329 (433)
Q Consensus 258 ~~~~~~~~~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~q~~~~~~ 329 (433)
....+.-.+| ++ +++|.++ .| +.+|.+++++++. +.+.. +...++++.++++.+++.+.
T Consensus 269 a~~~~gv~PD-iv---~~gKgl~-gG~~Pi~av~~~~~i~--------~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~ 335 (459)
T PRK05965 269 ACEAEGVVPD-LM---TVAKGLT-SGYVPMGAVLMSDHVY--------QGIADGAGAAAPVGHGYTYSAHPVSAAVGLEV 335 (459)
T ss_pred hHhhcCCCCC-eE---Eechhhc-cCCcceeEEEEcHHHH--------HHHhccccccccccccCCCCCCHHHHHHHHHH
Confidence 3333333345 33 5799998 88 5999999998874 33321 23445667889998888888
Q ss_pred cCcCChhHHHHHHHHHHHHHHHHHHHHhhc---C-CeeecCCCccEEEEECCC-C------C-----hHHHHHHHHHcCC
Q 045431 330 LSPEGFKAVHEVIGFYKENTDIIVETFNSL---G-FKVYGGKNAPYVWVQFPG-R------S-----SWDVFSEILEKTH 393 (433)
Q Consensus 330 l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---g-~~~~~~~~g~~~~~~~~~-~------~-----~~~~~~~l~~~~g 393 (433)
|+-... +++.++.++.-+++.+.|+++ . +.-+. ..|+++-+.+.. . + ...+...++ ++|
T Consensus 336 L~~l~~---~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vr-G~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~-~~G 410 (459)
T PRK05965 336 LRLYHE---GGLLANGQKAGPRFAAGLDALRAHPLVGDVR-GRGLLGALELVADKATKTPFDAALDPADRIFDRAY-ANG 410 (459)
T ss_pred HHHHHh---ccHHHHHHHHHHHHHHHHHhhccCCCEEEEe-ecceEEEEEEeccccccCCCCchhHHHHHHHHHHH-hCC
Confidence 763221 334555666666666666654 1 11122 245555565531 0 0 123444444 559
Q ss_pred eEecCCCCCCCCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 394 VVTTPGSGFGPGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 394 i~v~~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
|.+.+. +.+.+|++ +..+++++++++++|.+++
T Consensus 411 ll~~~~------g~~~i~~~PpL~it~~ei~~~~~~l~~~l 445 (459)
T PRK05965 411 LVFRAF------GDGVLGFAPALCCTEGEFDLIFERTRKTL 445 (459)
T ss_pred eEEEec------CCcEEEEECCCcCCHHHHHHHHHHHHHHH
Confidence 999752 24678988 5679999999999998876
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.1e-15 Score=145.99 Aligned_cols=349 Identities=9% Similarity=0.027 Sum_probs=201.9
Q ss_pred HHHHHhcCCCCceEEecCCCC--C-CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcE
Q 045431 53 KAAHMLKYPDAEVISLGIGDT--T-EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDI 129 (433)
Q Consensus 53 ~~~~~~~~~~~~~i~l~~g~~--~-~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i 129 (433)
++......+++..+|+..|.- . -..+|.+.+++.+++.+... .....+ ..+.+..+|+.|.+..+.+.+.+
T Consensus 33 ~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~-~~~~~~-----~~~~~~~la~~L~~~~p~~~~~v 106 (428)
T PRK07986 33 EGCELILADGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSH-VMFGGI-----THPPAIELCRKLVAMTPQPLECV 106 (428)
T ss_pred eeeEEEeCCCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHhhcCC-cccccc-----CCHHHHHHHHHHHhhCCCCcCEE
Confidence 333344556778999977642 2 24678999999999876421 111111 12445556666544233334789
Q ss_pred EEcCChHHHHHH-HH--Hhc-----CCCCEEEEeCCCChhhhhhHHHh-CCcccc-cccccccceEEEeecCccC---Cc
Q 045431 130 FVSDGAKCDISR-LQ--IVF-----GSNVTMAVQDPSYPAYVDSSVIM-GQTGEF-QKDAEKYGKIEYMRCTAEN---GF 196 (433)
Q Consensus 130 ~~~~G~~~al~~-l~--~l~-----~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~-~~~~~~~~~~~~~~~~~~~---~~ 196 (433)
++++++++|... +. ... ....+|+..+.+|++.......+ +....+ ..+......+..++..... .+
T Consensus 107 ~f~~SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 186 (428)
T PRK07986 107 FLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEW 186 (428)
T ss_pred EEeCCcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchhh
Confidence 999999999885 31 111 22467899999998754322222 211000 0011111112222221100 00
Q ss_pred ----ccCC----CCC-CCccEEEEcCC--CCcccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCC
Q 045431 197 ----FPDL----STV-ARTDIIFFCSP--NNPTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPG 264 (433)
Q Consensus 197 ----~~~~----~~~-~~~~~i~l~~p--~nPtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 264 (433)
..++ +.. .++.+ ++..| +.-.|+ ..+++.+++|.++|++||+++|.||++..+...|.......+.-
T Consensus 187 ~~~d~~~l~~~l~~~~~~iaa-vi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa~~~~gv 265 (428)
T PRK07986 187 DERDIAPFARLMAAHRHEIAA-VILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAGI 265 (428)
T ss_pred HHHHHHHHHHHHHhCCCcEEE-EEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeeeecccCC
Confidence 0011 111 23444 44455 455565 44678999999999999999999999987644443322222222
Q ss_pred CCcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHH-----HHhhccCCCcHHHHHHHHHhcCcCChhHH
Q 045431 265 AKEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNR-----IVCTCFNGASNISQAGGLACLSPEGFKAV 338 (433)
Q Consensus 265 ~~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~q~~~~~~l~~~~~~~~ 338 (433)
.+| ++ +++|.++ .| +.+|.+++++++. +.+.. +....+.+.++++.+++.+.|+....
T Consensus 266 ~PD-i~---t~gK~l~-gG~~p~~av~~~~~i~--------~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~~--- 329 (428)
T PRK07986 266 APD-IL---CLGKALT-GGTMTLSATLTTREVA--------ETISNGEAGCFMHGPTFMGNPLACAVANASLSLLES--- 329 (428)
T ss_pred CCC-EE---Eechhhh-CCcccCcchhchHHHH--------HHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHh---
Confidence 234 23 5899997 88 5899999888874 33432 12334555788888888877763221
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-CCe---eecCCCccEEEEECCC-CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe
Q 045431 339 HEVIGFYKENTDIIVETFNSL-GFK---VYGGKNAPYVWVQFPG-RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS 413 (433)
Q Consensus 339 ~~~~~~~~~~~~~l~~~l~~~-g~~---~~~~~~g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~ 413 (433)
+++.++.+++.+++.+.|+++ ... -+.. .|.++-+.+.. .....+...++ ++||.+.+. + +.+|++
T Consensus 330 ~~~~~~~~~~g~~l~~~l~~l~~~~~i~~vRg-~Gl~~~ve~~~~~~~~~~~~~l~-~~Gl~~~~~------g-~~i~~~ 400 (428)
T PRK07986 330 GDWQQQVAAIEAQLREELAPLRDAPMVADVRV-LGAIGVVETTRPVNMAALQRFFV-EQGVWIRPF------G-KLIYLM 400 (428)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCEEeEec-cceEEEEEeCCcccHHHHHHHHH-HCCcEEEec------C-CEEEEe
Confidence 234556666666666666654 221 1221 35666666653 23345555554 559999763 1 479997
Q ss_pred --eccChhHHHHHHHHHHHhhC
Q 045431 414 --AFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 414 --~~~~~~~l~~~l~~l~~~l~ 433 (433)
+..+++++++++++|.++++
T Consensus 401 Ppl~it~~ei~~~~~~l~~~l~ 422 (428)
T PRK07986 401 PPYIILPEQLQRLTAAVNRAVQ 422 (428)
T ss_pred CCCCCCHHHHHHHHHHHHHHHh
Confidence 67899999999999998763
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=6e-15 Score=143.24 Aligned_cols=155 Identities=17% Similarity=0.238 Sum_probs=109.8
Q ss_pred CCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhh----HHHhCCccccccccc
Q 045431 106 GEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDS----SVIMGQTGEFQKDAE 180 (433)
Q Consensus 106 g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~----~~~~g~~~~~~~~~~ 180 (433)
-..+|++.+|++. +.+ ..++++++++++.+ +..++++||+|+++.++|.+.... +...|
T Consensus 64 ~~~~le~~lA~l~----g~~--~al~~~SG~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~~~~~~G---------- 127 (427)
T PRK05994 64 TNAVLEERVAALE----GGT--AALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKSFG---------- 127 (427)
T ss_pred cHHHHHHHHHHHh----CCC--cEEEEcCHHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHHHHHHhcC----------
Confidence 4577888888885 443 46677777777776 677899999999999999875443 34445
Q ss_pred ccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCccc
Q 045431 181 KYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIF 260 (433)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~ 260 (433)
..++.++.++...+...+ .+++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+.... ..++
T Consensus 128 --~~v~~vd~~d~~~l~~ai--~~~tklV~vesp~NptG~v~d---l~~I~~la~~~gi~livD~a~a~~~~---~~pl- 196 (427)
T PRK05994 128 --WQVRWADADDPASFERAI--TPRTKAIFIESIANPGGTVTD---IAAIAEVAHRAGLPLIVDNTLASPYL---IRPI- 196 (427)
T ss_pred --cEEEEECCCCHHHHHHhc--CcCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCcccccc---CCcc-
Confidence 366666653211221111 357899999999999999998 78999999999999999999974211 1122
Q ss_pred ccCCCCcceEEEecccccccccccceeeeec
Q 045431 261 EIPGAKEVAIETSSFSKYAGFTGVRLGWTVI 291 (433)
Q Consensus 261 ~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~ 291 (433)
.+ +-.+++.|++|.+|-+|-.+|.+++
T Consensus 197 ~~----gaDivv~S~tK~lgg~~~~~gG~v~ 223 (427)
T PRK05994 197 EH----GADIVVHSLTKFLGGHGNSMGGIIV 223 (427)
T ss_pred cc----CCcEEEEcCccccCCCCCcEEEEEE
Confidence 11 1238899999999855655776555
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.7e-15 Score=144.89 Aligned_cols=345 Identities=12% Similarity=0.095 Sum_probs=197.8
Q ss_pred HHHHHhcCCCCceEEecCCCCC--C-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcE
Q 045431 53 KAAHMLKYPDAEVISLGIGDTT--E-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDI 129 (433)
Q Consensus 53 ~~~~~~~~~~~~~i~l~~g~~~--~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i 129 (433)
++....+.+++..||+..|... + ..+|.+.+++.+++.+.. .++. ..++...+|+.+.+..+. .+.+
T Consensus 89 ~G~~l~D~dG~~yiD~~~g~g~~~lGh~~p~v~~av~~ql~~~~------~~~~---~~~~~~~lAe~l~~~~p~-~~~v 158 (474)
T PLN02482 89 KGSYAWDVDGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGT------SFGA---PCLLENVLAEMVIDAVPS-VEMV 158 (474)
T ss_pred eeCEEEECCCCEEEEecccccccccCCCCHHHHHHHHHHHhhCC------CCCC---CCHHHHHHHHHHHHhCCC-CCEE
Confidence 3344455667889999766532 2 367899999999997531 1211 224555666666543332 5799
Q ss_pred EEcCChHHHHHHHHHh---cCCCCEEEEeCCCChhhhhhHHHhCCccc--c---ccccc---ccceEEEeecCccCCccc
Q 045431 130 FVSDGAKCDISRLQIV---FGSNVTMAVQDPSYPAYVDSSVIMGQTGE--F---QKDAE---KYGKIEYMRCTAENGFFP 198 (433)
Q Consensus 130 ~~~~G~~~al~~l~~l---~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~--~---~~~~~---~~~~~~~~~~~~~~~~~~ 198 (433)
.+++++++|......+ ....++|+..+-+|++....+......+. . ...+. ....+..++.++.+.+..
T Consensus 159 ~f~~SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd~~~l~~ 238 (474)
T PLN02482 159 RFVNSGTEACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPYNDLEAVKK 238 (474)
T ss_pred EEeCChHHHHHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecCCChHHHHH
Confidence 9999999998863222 33457888888889886533211100000 0 00000 001223334322111111
Q ss_pred CCCCC-CCccEEEEcCC-CCccccCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecc
Q 045431 199 DLSTV-ARTDIIFFCSP-NNPTGAAA-TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSF 275 (433)
Q Consensus 199 ~~~~~-~~~~~i~l~~p-~nPtG~~~-~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~ 275 (433)
.++.. .++.+ ++..| ..-.|.+. +++.+++|.++|++||+++|.||++..+ ..+.......+.-.+| +.+|
T Consensus 239 ~l~~~~~~iAa-vI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~~ga~~~~gv~PD----i~t~ 312 (474)
T PLN02482 239 LFEANKGEIAA-VILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAYGGAQEYFGITPD----LTTL 312 (474)
T ss_pred HHHhCCCceEE-EEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCcchHhHHhCCCCC----EEEe
Confidence 12211 23444 44556 55567655 4788999999999999999999999876 3332211111222244 3478
Q ss_pred cccccccccceeeeeccccccccCCcchhHHHH---HHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHH
Q 045431 276 SKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFN---RIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDII 352 (433)
Q Consensus 276 sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 352 (433)
+|.+| .|+.+|.++++++++ +.+. ......+.+.++++.+++.+.|+.... +...++++++.+++
T Consensus 313 gK~lg-gG~Pigav~g~~ei~--------~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~---~~~~~~~~~~g~~l 380 (474)
T PLN02482 313 GKVIG-GGLPVGAYGGRREIM--------EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQ---PGTYEYLDKITKKL 380 (474)
T ss_pred cchhh-CCCceEEEEEcHHHH--------HhhccCCCcccccCcchhHHHHHHHHHHHHHHhc---cCHHHHHHHHHHHH
Confidence 99998 899999999988875 3332 122334445678888877777663221 23455555566666
Q ss_pred HHHHhhc----CCeee-cCCCccEEEEECC--C---------CC---hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe
Q 045431 353 VETFNSL----GFKVY-GGKNAPYVWVQFP--G---------RS---SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS 413 (433)
Q Consensus 353 ~~~l~~~----g~~~~-~~~~g~~~~~~~~--~---------~~---~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~ 413 (433)
.+.|++. ++.+. ..-++++ .+.+. . .+ ...+...+++ +||.+.|... + .++ ++
T Consensus 381 ~~~L~~l~~~~g~~~~~~~v~g~~-gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~-~Gv~~~~~~~--~--~~~--ps 452 (474)
T PLN02482 381 IQGILEAGKKAGHEMCGGYISGMF-GFFFTEGPVYNFADAKKSDTAKFARFHRGMLE-EGVYLAPSQF--E--AGF--TS 452 (474)
T ss_pred HHHHHHHHHhcCCCEEEcccceEE-EEEEecCCccChhhhccCCHHHHHHHHHHHHH-CCeEEeccCC--C--CCc--CC
Confidence 6666543 44443 2224433 22221 1 01 1234555554 5999977321 1 111 56
Q ss_pred eccChhHHHHHHHHHHHhhC
Q 045431 414 AFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 414 ~~~~~~~l~~~l~~l~~~l~ 433 (433)
+..+++||+++++++.++++
T Consensus 453 l~ht~~dId~~l~al~~~l~ 472 (474)
T PLN02482 453 LAHTEEDIDFTIAAAERVLA 472 (474)
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 77899999999999998763
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=9e-15 Score=141.74 Aligned_cols=159 Identities=14% Similarity=0.203 Sum_probs=114.4
Q ss_pred CCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHH-hCCccccccccccc
Q 045431 105 QGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVI-MGQTGEFQKDAEKY 182 (433)
Q Consensus 105 ~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~-~g~~~~~~~~~~~~ 182 (433)
+-..+|++.+|++. +.. ..++++++++|+.+ +..++++||+|+++...|.+....+.. +...|
T Consensus 64 p~~~~le~~lA~l~----g~~--~av~~sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~G--------- 128 (433)
T PRK08134 64 PTVAVLEERVAALE----GGV--GAIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRFG--------- 128 (433)
T ss_pred hHHHHHHHHHHHHh----CCC--cEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhhCC---------
Confidence 34788899999886 543 46889999999987 677899999999999999876555432 11112
Q ss_pred ceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCccccc
Q 045431 183 GKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEI 262 (433)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~ 262 (433)
++++.++.++...+...+ .+++++|++.+|+||+|.+.+ +++|.++|+++|+++|+|.+++.-.. ..++ .+
T Consensus 129 i~v~~vd~~d~~~l~~~i--~~~TklV~~e~~~np~g~v~D---i~~I~~la~~~gi~livD~t~a~~~~---~~pl-~~ 199 (433)
T PRK08134 129 IETTFVKPGDIDGWRAAI--RPNTRLLFGETLGNPGLEVLD---IPTVAAIAHEAGVPLLVDSTFTTPYL---LRPF-EH 199 (433)
T ss_pred eEEEEECCCCHHHHHHhc--CCCCeEEEEECCCcccCcccC---HHHHHHHHHHcCCEEEEECCCccccc---CCch-hc
Confidence 367777764211211111 368999999999999999998 88899999999999999999874221 1222 22
Q ss_pred CCCCcceEEEecccccccccccceeeeec
Q 045431 263 PGAKEVAIETSSFSKYAGFTGVRLGWTVI 291 (433)
Q Consensus 263 ~~~~~~vi~i~S~sK~~~~~G~r~G~l~~ 291 (433)
+..+++.|.+|.++.+|-.+|.+++
T Consensus 200 ----GaD~vv~S~tK~l~g~g~~~gG~v~ 224 (433)
T PRK08134 200 ----GADLVYHSATKFLGGHGTAIGGVLV 224 (433)
T ss_pred ----CCCEEEeccccccCCCCCceEEEEE
Confidence 2248899999999866766776654
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-14 Score=142.48 Aligned_cols=353 Identities=10% Similarity=0.025 Sum_probs=205.5
Q ss_pred HHHHHHHhcCCCCceEEecCCCCC--C-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCC
Q 045431 51 RRKAAHMLKYPDAEVISLGIGDTT--E-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEG 127 (433)
Q Consensus 51 ~~~~~~~~~~~~~~~i~l~~g~~~--~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~ 127 (433)
+.++......+++..||+..|... + ..+|.+.+++.+++.+.........+ ..+.+..+|+.|.+..+.+.+
T Consensus 38 ~a~G~~l~D~dG~~ylD~~sg~~~~~lGh~~p~v~~Av~~q~~~~~~~~~~~~~-----~~~~~~~lAe~L~~~~p~~~~ 112 (461)
T PRK07482 38 GGEGIRITDAQGRRYIDAFAGLYCVNVGYGRTEVAEAIAEQAKELAYYHTYVGH-----GTEASITLSKRIIDRAPAGMS 112 (461)
T ss_pred eeeeeEEEECCCCEEEEcccchhhhcCCCCCHHHHHHHHHHHHhcCcccccccc-----CCHHHHHHHHHHHHhCCCCcC
Confidence 344444555677889999877532 2 36899999999999764210111122 234455566655442333457
Q ss_pred cEEEcCChHHHHHHHHHhc-------C-C-CCEEEEeCCCChhhhhhHHHhCCcccc-cccccccceEEEeecCcc-C--
Q 045431 128 DIFVSDGAKCDISRLQIVF-------G-S-NVTMAVQDPSYPAYVDSSVIMGQTGEF-QKDAEKYGKIEYMRCTAE-N-- 194 (433)
Q Consensus 128 ~i~~~~G~~~al~~l~~l~-------~-~-gd~Vl~~~p~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~-~-- 194 (433)
.+++++++++|+.....+. . + ..+|+..+.+|++.......+.....+ ..++.....+..++.... .
T Consensus 113 ~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 192 (461)
T PRK07482 113 KVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRA 192 (461)
T ss_pred EEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCcccccc
Confidence 8999999999998632221 1 1 357888888898854322222211100 001111112222221110 0
Q ss_pred --C-----c----ccC----CCC--CCCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCC
Q 045431 195 --G-----F----FPD----LST--VARTDIIFFCSP-NNPTGAA-ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN 255 (433)
Q Consensus 195 --~-----~----~~~----~~~--~~~~~~i~l~~p-~nPtG~~-~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~ 255 (433)
+ + ... ++. .+++.+|+ ..| +...|+. .+++.+++|.++|++||+++|.||++..|...+.
T Consensus 193 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi-~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~ 271 (461)
T PRK07482 193 DAGMSEEQFSAYCADELEELILAEGPDTIAAFI-AEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGS 271 (461)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEE-ECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcc
Confidence 0 0 000 111 13455544 456 5555766 5788999999999999999999999998866654
Q ss_pred CCcccccCCCCcceEEEeccccccccccc-ceeeeeccccccccCCcchhHHHH-------HHHhhccCCCcHHHHHHHH
Q 045431 256 PRSIFEIPGAKEVAIETSSFSKYAGFTGV-RLGWTVIPKELLFSDGFPVAKDFN-------RIVCTCFNGASNISQAGGL 327 (433)
Q Consensus 256 ~~~~~~~~~~~~~vi~i~S~sK~~~~~G~-r~G~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~q~~~~ 327 (433)
......++-.+| ++ +++|.++ .|. .+|.+++++++. +.+. .+...++.+.++++.+++.
T Consensus 272 ~~a~~~~gv~PD-iv---~~gKgl~-gG~~Pi~av~~~~~i~--------~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~ 338 (461)
T PRK07482 272 MFGSDHYGIEPD-LI---TVAKGLT-SAYAPLSGSIVGEKVW--------DVLEQGSDEHGAIGHGWTYSGHPICAAAAL 338 (461)
T ss_pred hhhHHhcCCCCC-EE---EEccccc-cCccccceeeecHHHH--------HHHhcccccCCccccCCCCCcCHHHHHHHH
Confidence 333333333345 33 5799997 885 899999888763 3332 1124456668899999888
Q ss_pred HhcCcCChhHHHHHHHHHHHHHHHHHHHHhh----cCCe-eecCCCccEEEEECCC-C------C-----hHHHHHHHHH
Q 045431 328 ACLSPEGFKAVHEVIGFYKENTDIIVETFNS----LGFK-VYGGKNAPYVWVQFPG-R------S-----SWDVFSEILE 390 (433)
Q Consensus 328 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~g~~-~~~~~~g~~~~~~~~~-~------~-----~~~~~~~l~~ 390 (433)
+.|+.... ++..++.++..+++.+.|++ +++. -+. ..|.++.+.+.. . + ...+...++
T Consensus 339 a~L~~~~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vr-G~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~- 413 (461)
T PRK07482 339 ANLDILER---ENLVGNAAEVGAYFRARLRAAFGDHPLVGEVR-GVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAAL- 413 (461)
T ss_pred HHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEe-eceeEEEEEeccCCCcCCCCChhhHHHHHHHHHHH-
Confidence 88763222 23344455555666666654 3321 122 245666666641 1 0 123445555
Q ss_pred cCCeEecCCCCCCCCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 391 KTHVVTTPGSGFGPGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 391 ~~gi~v~~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
++||.+.++. ..+.+|+. +..+++++++++++|.+++
T Consensus 414 ~~Gvl~~~~~-----~~~~i~~~Ppl~it~~ei~~~~~~l~~~l 452 (461)
T PRK07482 414 ERGVIARAMP-----HGDILGFAPPLVLTRAEADEIVAIAKDAV 452 (461)
T ss_pred HCCcEEecCC-----CCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 4599986521 13578887 5679999999999998876
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.7e-15 Score=146.25 Aligned_cols=349 Identities=13% Similarity=0.160 Sum_probs=202.4
Q ss_pred HHHHHHhcCCCCceEEecCCCC--CC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCc
Q 045431 52 RKAAHMLKYPDAEVISLGIGDT--TE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGD 128 (433)
Q Consensus 52 ~~~~~~~~~~~~~~i~l~~g~~--~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~ 128 (433)
.++......+++..||+..|.- .+ ..+|.+.+++.+++.+... .....+. .+....+++.|....+...+.
T Consensus 38 a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~-~~~~~~~-----~~~~~~la~~L~~~~p~~~~~ 111 (445)
T PRK09221 38 AEGMYYTDADGRKILDGTAGLWCCNAGHGRPEIVEAVARQAATLDY-APAFQMG-----HPLAFELAERLAELAPGGLDH 111 (445)
T ss_pred ccccEEEeCCCCEEEEccccHhhccCCCCCHHHHHHHHHHHHhccC-ccccccC-----CHHHHHHHHHHHHhCCCCCCE
Confidence 3444445566778999977642 22 3678899999999876421 1111221 233344555554322323468
Q ss_pred EEEcCChHHHHHHHHHh---c----C-C-CCEEEEeCCCChhhhhhHHHhC-CcccccccccccceEEEeecCc---cCC
Q 045431 129 IFVSDGAKCDISRLQIV---F----G-S-NVTMAVQDPSYPAYVDSSVIMG-QTGEFQKDAEKYGKIEYMRCTA---ENG 195 (433)
Q Consensus 129 i~~~~G~~~al~~l~~l---~----~-~-gd~Vl~~~p~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~---~~~ 195 (433)
|++++++++++.....+ . . + ..+|+....+|++........+ .......++.....+..++... ...
T Consensus 112 v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (445)
T PRK09221 112 VFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENA 191 (445)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccccc
Confidence 99999999998863221 1 1 1 3578888889987643322222 1111111111111222333211 000
Q ss_pred c-----------ccCCC----CC--CCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCC
Q 045431 196 F-----------FPDLS----TV--ARTDIIFFCSP-NNPTGAA-ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNP 256 (433)
Q Consensus 196 ~-----------~~~~~----~~--~~~~~i~l~~p-~nPtG~~-~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~ 256 (433)
+ ..+++ .. .++.+|+ ..| +...|.. .+.+.+++|.++|++||+++|.||++..|...|..
T Consensus 192 ~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi-~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~ 270 (445)
T PRK09221 192 FSKGQPEHGAELADDLERLVALHDASTIAAVI-VEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAA 270 (445)
T ss_pred cCCChHHHHHHHHHHHHHHHHhcCCCcEEEEE-EecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchh
Confidence 0 00111 11 2444544 455 5556764 46788999999999999999999999876554443
Q ss_pred CcccccCCCCcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHH-------HHhhccCCCcHHHHHHHHH
Q 045431 257 RSIFEIPGAKEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNR-------IVCTCFNGASNISQAGGLA 328 (433)
Q Consensus 257 ~~~~~~~~~~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~q~~~~~ 328 (433)
.....+.-.+| +-+++|.++ .| +.+|.++++++++ +.+.. +....+.+.++++.+++.+
T Consensus 271 ~~~~~~gv~PD----i~~~gK~l~-gG~~Pi~av~~~~~i~--------~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a 337 (445)
T PRK09221 271 FAAERFGVTPD----IITFAKGLT-NGAIPMGAVIASDEIY--------DAFMQGPEYAIEFFHGYTYSAHPVACAAGLA 337 (445)
T ss_pred hHHHhcCCCCC----EEEeccccc-cCcccceeeEEcHHHH--------HhhccCcccccccccccCCCcCHHHHHHHHH
Confidence 22222322244 347899997 66 6899999988774 22211 1233455578888887777
Q ss_pred hcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCee---ecCCCccEEEEECCC--C----ChHHHHHHHHHcCCeEecC
Q 045431 329 CLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKV---YGGKNAPYVWVQFPG--R----SSWDVFSEILEKTHVVTTP 398 (433)
Q Consensus 329 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~---~~~~~g~~~~~~~~~--~----~~~~~~~~l~~~~gi~v~~ 398 (433)
.|+.... +.+.++.++..+++.+.|+++ +... +.. .|.+.-+.+.. . ....+...+++ +||.+.+
T Consensus 338 ~L~~i~~---~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrg-~Gl~~~v~~~~~~~~~~~~~~~~~~~~~~-~Gv~~~~ 412 (445)
T PRK09221 338 TLDIYRE---EDLFERAAELAPYFEDAVHSLKGLPHVIDIRN-IGLVAGIELAPRPGAPGARGYEAFMKCFE-KGLLVRY 412 (445)
T ss_pred HHHHHHh---ccHHHHHHHHHHHHHHHHHhhccCCCEEEEec-CceEEEEEEecccccccchHHHHHHHHHH-CCeEEee
Confidence 7763211 244566777777777777765 2221 221 34455555531 1 12345555554 5999975
Q ss_pred CCCCCCCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 399 GSGFGPGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 399 g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
+ .+.+||+ +..+++++++++++|.+++
T Consensus 413 ~-------~~~lr~~Ppl~~t~~eid~~~~~l~~~l 441 (445)
T PRK09221 413 T-------GDTIALSPPLIIEKAQIDELVDALGDAL 441 (445)
T ss_pred c-------CCEEEEECCccCCHHHHHHHHHHHHHHH
Confidence 3 2579999 5679999999999999876
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.4e-15 Score=155.07 Aligned_cols=337 Identities=11% Similarity=0.044 Sum_probs=212.8
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCC---CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChH---
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA---EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAK--- 136 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~---~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~--- 136 (433)
..+|.|++..+.+.+-....-+-...+ ..++-|.| .+|+.++-..+.+++++-++. ++|.++++++
T Consensus 525 ~~~~plgsctmk~n~~~~~~~~~~~~~------~~~hp~~p~~~~~g~~~~~~~~r~~la~i~g~--~~v~f~pnaga~g 596 (993)
T PLN02414 525 HSMIPLGSCTMKLNATTEMMPVTWPEF------ANIHPFAPVDQAQGYQEMFEDLGDLLCEITGF--DSFSLQPNAGAAG 596 (993)
T ss_pred cCCccCcccccccCchhhhhhhcCcch------hhcCCCCCHHHHHHHHHHHHHHHHHHHHHhCC--CeEEEcCCCcHHH
Confidence 356777777765433222111111111 22333333 356555555555555443365 8999999998
Q ss_pred -HHHHH-HHHhcCC-CC----EEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--C---
Q 045431 137 -CDISR-LQIVFGS-NV----TMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--V--- 203 (433)
Q Consensus 137 -~al~~-l~~l~~~-gd----~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~--- 203 (433)
.++.+ +..++++ || .|+++...|......+...| .+++.++.+.++..+.+ +++ .
T Consensus 597 e~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~~~G------------~~vv~v~~d~~G~vDle~L~~~i~~~~ 664 (993)
T PLN02414 597 EYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAAMCG------------MKIVVVGTDAKGNINIEELRKAAEAHK 664 (993)
T ss_pred HHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHHHHCC------------CEEEEeccCCCCCcCHHHHHHHHhccC
Confidence 66665 6777865 88 89999999999888888877 58999998765443332 221 1
Q ss_pred CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccc---
Q 045431 204 ARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAG--- 280 (433)
Q Consensus 204 ~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~--- 280 (433)
+++++|++++|+|-+|...+ +++|+++|+++|+++++|.++.--... .....++ +..++.+|.+|+|+
T Consensus 665 ~~ta~V~vt~pSn~gg~e~~---I~eI~~iah~~Galv~vDgAq~~a~~~--l~~p~~~----GaD~~~~s~HK~f~~P~ 735 (993)
T PLN02414 665 DNLAALMVTYPSTHGVYEEG---IDEICDIIHDNGGQVYMDGANMNAQVG--LTSPGFI----GADVCHLNLHKTFCIPH 735 (993)
T ss_pred CCeEEEEEECCCccccccch---HHHHHHHHHHcCCEEEEEecCHHhccC--cCCcccc----CCCEEEecCCccCCcCc
Confidence 36889999999999998755 899999999999999999998631101 1111222 23488999999775
Q ss_pred -ccccceeeeeccccccccCCcchh-H---HHHHHHhhccCC------CcHHHHHHHHHhcCcCChhHHHHHHHHHHHHH
Q 045431 281 -FTGVRLGWTVIPKELLFSDGFPVA-K---DFNRIVCTCFNG------ASNISQAGGLACLSPEGFKAVHEVIGFYKENT 349 (433)
Q Consensus 281 -~~G~r~G~l~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 349 (433)
.+|-.+|++.+.+.+...--.... . ...+........ .+.....++..++...+.+.+++..++...+.
T Consensus 736 G~GGPg~G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nA 815 (993)
T PLN02414 736 GGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPISYTYIAMMGSEGLTDASKIAILNA 815 (993)
T ss_pred ccCCCCeeeEEEchhhcccCCCCccccCCCcccccCCCCcCCccchhhhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHH
Confidence 234458999998877521110000 0 011111111111 12244445566666666677888889999999
Q ss_pred HHHHHHHhhc-CCeeecCCCccE--EEEECC------CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccCh
Q 045431 350 DIIVETFNSL-GFKVYGGKNAPY--VWVQFP------GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHR 418 (433)
Q Consensus 350 ~~l~~~l~~~-g~~~~~~~~g~~--~~~~~~------~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~ 418 (433)
+++.+.|++. ++.+..+.+..+ +.++++ +.+..++.++|+ ++||..-. ..| + ..+++|++. +.+.
T Consensus 816 nYl~~rL~~~~~~~~~~~~~~~~hEfv~~~~~l~~~~g~~~~di~krL~-d~Gihapt-~~~-p-v~~~lmiepTE~~sk 891 (993)
T PLN02414 816 NYMAKRLEGHYPVLFRGKNGTCAHEFIIDLRPFKNTAGIEPEDVAKRLM-DYGFHAPT-MSW-P-VPGTLMIEPTESESK 891 (993)
T ss_pred HHHHHHHHhhCCccccCCCCCeeeeEEEeccccccccCCCHHHHHHHHH-HcCcEEee-ecc-c-cCCEEEEEeeeeCCH
Confidence 9999999774 555544333211 234443 245577888887 66997643 334 2 367899995 6689
Q ss_pred hHHHHHHHHHHHhh
Q 045431 419 GNVLEACKRFKHLY 432 (433)
Q Consensus 419 ~~l~~~l~~l~~~l 432 (433)
+||++.+++|+++.
T Consensus 892 eelDrf~~al~~i~ 905 (993)
T PLN02414 892 AELDRFCDALISIR 905 (993)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.3e-15 Score=144.77 Aligned_cols=349 Identities=12% Similarity=0.098 Sum_probs=200.0
Q ss_pred HHHHHhcCCCCceEEecCCCC--C-CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcE
Q 045431 53 KAAHMLKYPDAEVISLGIGDT--T-EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDI 129 (433)
Q Consensus 53 ~~~~~~~~~~~~~i~l~~g~~--~-~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i 129 (433)
.+......++...||+..|.. . -..+|.+.+++.+++.+... .....+ ..+....+|+.+.+..+...+.+
T Consensus 36 ~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~-~~~~~~-----~~~~~~~la~~l~~~~p~~~~~v 109 (442)
T PRK13360 36 KGMYYTTHDGRRVLDGTAGLWCVNAGHGRPEIVEAVRAQAGELDY-APAFQM-----GHPKAFELANRIAEIAPGGLNHV 109 (442)
T ss_pred eeeEEEeCCCCEEEECchhHHHhccCCCCHHHHHHHHHHHHhCCC-cccCCc-----CCHHHHHHHHHHHHhCCCCCCEE
Confidence 333344556778999976642 2 24688999999999876421 111112 12334455555543223234689
Q ss_pred EEcCChHHHHHHHHHh---c-----CC-CCEEEEeCCCChhhhhhH-HHhCCcccccccccccceEEEeecCcc---CCc
Q 045431 130 FVSDGAKCDISRLQIV---F-----GS-NVTMAVQDPSYPAYVDSS-VIMGQTGEFQKDAEKYGKIEYMRCTAE---NGF 196 (433)
Q Consensus 130 ~~~~G~~~al~~l~~l---~-----~~-gd~Vl~~~p~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~ 196 (433)
++++++++|+.....+ . ++ ..+|+....+|++..... ...|.......++.....+..+|.... ..+
T Consensus 110 ~f~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 189 (442)
T PRK13360 110 FFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAF 189 (442)
T ss_pred EEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhcccc
Confidence 9999999998853221 1 12 357998998998864322 222211111111111112233332210 000
Q ss_pred c-----------cCCCC------CCCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCC
Q 045431 197 F-----------PDLST------VARTDIIFFCSP-NNPTGAA-ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPR 257 (433)
Q Consensus 197 ~-----------~~~~~------~~~~~~i~l~~p-~nPtG~~-~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~ 257 (433)
. .++++ ..++.+ +++.| +...|.. .+.+.+++|.++|++||+++|.||++..+...|...
T Consensus 190 ~~~~~~~~~~~~~~le~~l~~~~~~~~aa-vivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~ 268 (442)
T PRK13360 190 SKGQPEHGAELADELERLVTLHDASTIAA-VIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPF 268 (442)
T ss_pred CCChHHHHHHHHHHHHHHHHhcCCCcEEE-EEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccch
Confidence 0 01111 123444 44566 5555665 578899999999999999999999998775544432
Q ss_pred cccccCCCCcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHH-------HHhhccCCCcHHHHHHHHHh
Q 045431 258 SIFEIPGAKEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNR-------IVCTCFNGASNISQAGGLAC 329 (433)
Q Consensus 258 ~~~~~~~~~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~q~~~~~~ 329 (433)
....++-.+| +-+|+|.++ .| +.+|.+++++++. +.+.. +....+.+.++++.+++.+.
T Consensus 269 a~~~~gv~PD----ivt~gK~l~-gG~~P~gav~~~~~i~--------~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~ 335 (442)
T PRK13360 269 AAQYFGVTPD----LLTCAKGLT-NGAIPMGAVFVSSEIH--------DAFMQGPEAGIEFFHGYTYSGHPLACAAALAT 335 (442)
T ss_pred hhhhcCCCCc----eeeeeeccc-cCccceEEEEEcHHHH--------HHhhcCCccccccccCCCCCCCHHHHHHHHHH
Confidence 2222222244 237899997 67 7899999988874 22221 12334555788888888887
Q ss_pred cCcCChhHHHHHHHHHHHHHHHHHHHHhhcC-CeeecC--CCccEEEEECCC------CChHHHHHHHHHcCCeEecCCC
Q 045431 330 LSPEGFKAVHEVIGFYKENTDIIVETFNSLG-FKVYGG--KNAPYVWVQFPG------RSSWDVFSEILEKTHVVTTPGS 400 (433)
Q Consensus 330 l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~--~~g~~~~~~~~~------~~~~~~~~~l~~~~gi~v~~g~ 400 (433)
|+.... +.+.++.+++.+++.+.|+++. ...+.. ..|++.-+.+.. ....++...+++ +||.+.++
T Consensus 336 L~~l~~---~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~~~~l~~~~~~~~~~~~~~~~~l~~-~Gvl~~~~- 410 (442)
T PRK13360 336 LDLYER---EGLLTRAARLAPYWEDALHSLRDAPHVIDIRNLGLVGAVELAPRDGKPGKRAYEVFLKCFE-KGLMIRYT- 410 (442)
T ss_pred HHHHHh---CCHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEEecCCCCcchhHHHHHHHHHH-CCcEEEec-
Confidence 763211 2345666667777777776541 211111 124443444421 112355666555 59999753
Q ss_pred CCCCCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 401 GFGPGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 401 ~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
.+.+||+ +..+++++++++++|.+++
T Consensus 411 ------~~~lr~~Ppl~~t~~eid~~~~~l~~~l 438 (442)
T PRK13360 411 ------GDILALSPPLIIEEAQIDELFDILAQAL 438 (442)
T ss_pred ------CCEEEEeCCCccCHHHHHHHHHHHHHHH
Confidence 2479999 5679999999999998876
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-14 Score=141.91 Aligned_cols=349 Identities=13% Similarity=0.110 Sum_probs=192.5
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHH-hhcccCCCCCCC-CCCCCCHHHHHHHHHHHhccCCCCCCcEEE----cCChHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRS-YALSTQEGYSGY-GAEQGEKPLRAAIASTFYKDLGIEEGDIFV----SDGAKC 137 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~Y-~~~~g~~~lr~~la~~l~~~~~~~~~~i~~----~~G~~~ 137 (433)
..|+|--+++ ..++.+.+++...+ .++........| +-.....++.+...+...+.++...+.+.+ .+|+++
T Consensus 35 ~~l~liasen--~~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~SG~~A 112 (475)
T PLN03226 35 KGLELIASEN--FTSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPA 112 (475)
T ss_pred cCeeEecCCc--cCCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhCCCcceeEEecCcCchHHH
Confidence 3577766665 36788888888888 454422222233 222333333331111222344666655544 677777
Q ss_pred HHHHHHHhcCCCCEEEEeCCCChhhh-hhHHHhCCcccccccccccceEEEeecCccCCcccCCC---C---CCCccEEE
Q 045431 138 DISRLQIVFGSNVTMAVQDPSYPAYV-DSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS---T---VARTDIIF 210 (433)
Q Consensus 138 al~~l~~l~~~gd~Vl~~~p~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~i~ 210 (433)
.+.++.++++|||+|+..+....++. +.....|.+.- ....+.+...+.++.+++ ..+++ + ..++++|+
T Consensus 113 N~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s---~~~~~~~~~~y~~~~~~g-~iD~d~Le~~l~~~~pklIv 188 (475)
T PLN03226 113 NFAVYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKIS---ATSIYFESMPYRLDESTG-LIDYDKLEKKAMLFRPKLII 188 (475)
T ss_pred HHHHHHHhCCCCCEEEECCCCcCcchhhhhhhcccccc---cceEEEEeeeeeecCCCC-CcCHHHHHHHHhhcCCeEEE
Confidence 77778999999999998553222221 11111111000 000001233444443322 22322 1 24677655
Q ss_pred EcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCcccccCCCCcceEEEecccccccccccceee
Q 045431 211 FCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN--PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGW 288 (433)
Q Consensus 211 l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~ 288 (433)
+ ..++ +|+..+ +++|.++|+++|+++++|++|........ +.++ + ...++++|++|++ .|.+-|+
T Consensus 189 ~-~~S~-~s~~~D---~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p~---~---~~Div~~t~hK~L--~GP~Gg~ 255 (475)
T PLN03226 189 A-GASA-YPRDWD---YARMRKIADKVGALLMCDMAHISGLVAAQEAASPF---E---YCDVVTTTTHKSL--RGPRGGM 255 (475)
T ss_pred E-ecCc-CCCccC---HHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCCC---C---CCeEEEecCcccc--cCCCceE
Confidence 4 3333 677666 66888999999999999999985333221 2222 1 2238899999998 2333488
Q ss_pred eeccccccccCCc------chhHHHHHHHhhccCCCcHHHHHHHH-HhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCC
Q 045431 289 TVIPKELLFSDGF------PVAKDFNRIVCTCFNGASNISQAGGL-ACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGF 361 (433)
Q Consensus 289 l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~q~~~~-~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 361 (433)
+++++..+..... .+...+.........+.+.+.+.+++ .+++.......+..++++.++.+++.+.|.+.|+
T Consensus 256 I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~~G~ 335 (475)
T PLN03226 256 IFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMSKGY 335 (475)
T ss_pred EEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 8887764311000 00111111111112222333333333 3333111122366788999999999999999999
Q ss_pred eeecC-CCccEEEEECC--CCChHHHHHHHHHcCCeEecCCCCCC---CCCCCeEEEee------ccChhHHHHHHHHHH
Q 045431 362 KVYGG-KNAPYVWVQFP--GRSSWDVFSEILEKTHVVTTPGSGFG---PGGEGFIRVSA------FGHRGNVLEACKRFK 429 (433)
Q Consensus 362 ~~~~~-~~g~~~~~~~~--~~~~~~~~~~l~~~~gi~v~~g~~f~---~~~~~~iRi~~------~~~~~~l~~~l~~l~ 429 (433)
.+..+ .....+++++. +.+..+ +...+++.||.+..+...+ +..+..+|++. ..+++++++..+.|.
T Consensus 336 ~l~~~~t~~hi~lv~~~~~gi~~~~-~~~~L~~~~I~~nk~~~p~~~~~~~~~giRiGt~~lt~~g~~~~d~~~ia~~i~ 414 (475)
T PLN03226 336 KLVTGGTDNHLVLWDLRPLGLTGSR-VEKVLDLAHITLNKNAVPGDSSALVPGGVRIGTPAMTSRGLVEKDFEKVAEFLH 414 (475)
T ss_pred EEEcCCCCCCEEEEEccCCCCCHHH-HHHHHHHCCCEECCCCCCCCcccCCCCCcccCcHHHHHCCCCHHHHHHHHHHHH
Confidence 98753 23566778884 334444 4455666799998764221 12345699962 336899999999888
Q ss_pred Hhh
Q 045431 430 HLY 432 (433)
Q Consensus 430 ~~l 432 (433)
+++
T Consensus 415 ~~~ 417 (475)
T PLN03226 415 RAV 417 (475)
T ss_pred HHH
Confidence 776
|
|
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.6e-15 Score=129.49 Aligned_cols=320 Identities=18% Similarity=0.191 Sum_probs=200.4
Q ss_pred eEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHHHH
Q 045431 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQI 144 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l~~ 144 (433)
.+||-+-... -+-.++.+++.++.. +-.-|+.+.....|.+..|+.+ | ++.-++++||++..+-.+..
T Consensus 23 ~vDLRSDTvT-~PTdeMr~am~eA~v------gDdVyGeD~tt~rLE~~vA~l~----G-KEAgLFv~SGTmgNllaIm~ 90 (384)
T KOG1368|consen 23 SVDLRSDTVT-VPTDEMRRAMAEASV------GDDVYGEDPTTNRLEQRVAELF----G-KEAGLFVPSGTMGNLLAIMV 90 (384)
T ss_pred cccccccccc-CChHHHHHHHhhccc------CcccccCCccHHHHHHHHHHHh----C-ccceeeecccccccHHHHHH
Confidence 3555543322 233567777777653 3345777778899999999986 4 56789999999998887755
Q ss_pred hc-CCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCC---CC----------CCCccEEE
Q 045431 145 VF-GSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDL---ST----------VARTDIIF 210 (433)
Q Consensus 145 l~-~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----------~~~~~~i~ 210 (433)
-| ++|..|++.+-+|--..+..-.... ..+...++.++.+-..++ +. .+.+++|+
T Consensus 91 Hc~~rg~eii~gd~~HI~~~E~gg~s~l-----------~gv~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIc 159 (384)
T KOG1368|consen 91 HCHQRGSEIIVGDRAHIHRYEQGGISQL-----------AGVHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLIC 159 (384)
T ss_pred HhcCCCceEEeccchheeehhccChhhh-----------ccceeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEE
Confidence 55 6999999998877433222111111 123333333332222222 21 25689999
Q ss_pred EcCCCCccc-cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccccccee-e
Q 045431 211 FCSPNNPTG-AAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLG-W 288 (433)
Q Consensus 211 l~~p~nPtG-~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G-~ 288 (433)
|-|-||-+| .++|.|++.++.+||++||+.+..|.+--+-..-....++..+-...|.| --++||.+|.| +| .
T Consensus 160 lENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi~NAavasgV~vk~i~~~fDSV--siCLSKglgAP---VGSV 234 (384)
T KOG1368|consen 160 LENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARIFNAAVASGVPVKKICSAFDSV--SICLSKGLGAP---VGSV 234 (384)
T ss_pred eeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhhhhHHHHcCCCHHHHHHhhhhh--hhhhhccCCCC---cccE
Confidence 988877666 99999999999999999999999998765322111234444443222322 22689998743 56 6
Q ss_pred eeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcC-CeeecC-
Q 045431 289 TVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLG-FKVYGG- 366 (433)
Q Consensus 289 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~- 366 (433)
+++++.++.+ ...+++ .....+..+.+..++++-+|++. . ...+.-.++...+.+.++..+ +.+.-+
T Consensus 235 iVG~k~FI~k-----A~~~RK-alGGGmRQsGvLaaaaLval~~~-~----~~L~~dHk~A~~lAe~~~~~~~i~v~v~a 303 (384)
T KOG1368|consen 235 IVGSKDFIDK-----ARHFRK-ALGGGMRQSGVLAAAALVALDEN-V----PLLRADHKRAKELAEYINTPEEIRVEVPA 303 (384)
T ss_pred EEccHHHHHH-----HHHHHH-HhcCchhHHHHHHHHHHHHhhcc-h----HHHHHHHHHHHHHHHHhccccceeeecch
Confidence 7788888732 122222 22233334455555556566532 2 133445566667777777764 766444
Q ss_pred CCccEEEEECC--CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec--cChhHHHHHHHHHHH
Q 045431 367 KNAPYVWVQFP--GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF--GHRGNVLEACKRFKH 430 (433)
Q Consensus 367 ~~g~~~~~~~~--~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~l~~~l~~l~~ 430 (433)
...+++.+.+. ..+..++...+ +++||.+.+|.. ..+|+.+. .++++++..+..+.+
T Consensus 304 ~etNiv~~~l~q~~~~~~~l~~~~-~k~gi~lm~~~s------~r~Rivlh~Qvt~~~ve~~~~~~~k 364 (384)
T KOG1368|consen 304 VETNIVNMVLCQARLTAEELCKFL-EKNGILLMGGAS------RRIRIVLHHQVTDEDVEYVKSVLSK 364 (384)
T ss_pred hhcceeeeecccccCCHHHHHHHH-HHCCeEEeeccc------cceEEEEEEecCHHHHHHHHHHHHH
Confidence 45677776664 55666666665 566999988754 34899974 489999999988843
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-14 Score=139.39 Aligned_cols=345 Identities=13% Similarity=0.122 Sum_probs=208.1
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCC--CC-CCCCCCHHHHHHHHHHHhccCCCCC----CcEEEcCChH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYS--GY-GAEQGEKPLRAAIASTFYKDLGIEE----GDIFVSDGAK 136 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~Y-~~~~g~~~lr~~la~~l~~~~~~~~----~~i~~~~G~~ 136 (433)
.-|+|--+++ -..+.+.+++-..+.+... .++. .| +-.....++.....+...+.++++. .||..-+|+.
T Consensus 149 ~~l~LIASEN--~~S~av~~algS~ltnkYa-EG~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~SGs~ 225 (586)
T PLN02271 149 KGIELIASEN--FVCRAVMEALGSHLTNKYS-EGMPGARYYTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPYSCTS 225 (586)
T ss_pred cCeeeccccc--cCCHHHHHHhcCcccccCC-CCCCCCcCCCCChhHHHHHHHHHHHHHHHhCCcccccccceeeccHHH
Confidence 3466655554 3567777777776654322 1211 33 2233334444333344334556655 6788888888
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCChhhhhhHH------HhCCcccccccccccceEEEeecCccCCcccCC---C---CCC
Q 045431 137 CDISRLQIVFGSNVTMAVQDPSYPAYVDSSV------IMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDL---S---TVA 204 (433)
Q Consensus 137 ~al~~l~~l~~~gd~Vl~~~p~~~~~~~~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~ 204 (433)
+.+.++.++++|||+|+..+..|.++..... .....++ +.+.++++++++.+ ..++ + ...
T Consensus 226 AN~aV~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~-------~~~~vpY~~d~~~g-~IDyd~lek~a~~~ 297 (586)
T PLN02271 226 ANFAVYTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASI-------FFESLPYKVNPQTG-YIDYDKLEEKALDF 297 (586)
T ss_pred HHHHHHHHhcCCCCEEEEecCCCCCchhcccccccccccccccc-------eEEEEEcccccccC-ccCHHHHHHHhhhc
Confidence 8888889999999999999888887654321 1111111 13455555654322 2222 2 246
Q ss_pred CccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccc-cccCCC-CCcccccCCCCcceEEEeccccccccc
Q 045431 205 RTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYAL-YISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFT 282 (433)
Q Consensus 205 ~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~-~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~ 282 (433)
++|+|++..-.|| ..++ +++|.++|+++|+++++|.+|.. +...+. +.++. ...++.+|.+|++ .
T Consensus 298 rPKLII~g~Sayp--r~~D---~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~~------~aDvvt~TTHKtL--r 364 (586)
T PLN02271 298 RPKILICGGSSYP--REWD---YARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFD------YCDIVTSTTHKSL--R 364 (586)
T ss_pred CCeEEEECchhcc--CcCC---HHHHHHHHHHcCCEEEEECcccccccccCcCCCCCc------CCcEEEeCCcccC--C
Confidence 8998888666777 4455 77888889999999999999985 332221 22222 1238899999998 5
Q ss_pred ccceeeeecccccccc------------CCcchhHHHHHHHhhccCCCcHHHHHHHHHh-cCcCChhHHHHHHHHHHHHH
Q 045431 283 GVRLGWTVIPKELLFS------------DGFPVAKDFNRIVCTCFNGASNISQAGGLAC-LSPEGFKAVHEVIGFYKENT 349 (433)
Q Consensus 283 G~r~G~l~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~-l~~~~~~~~~~~~~~~~~~~ 349 (433)
|-|-|+++.+++.... ..+.+.+++.........+.+.....|+++. +........+...+++.++.
T Consensus 365 GPrGG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~~~efk~Ya~QVv~NA 444 (586)
T PLN02271 365 GPRGGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKKNA 444 (586)
T ss_pred CCCceEEEecccccccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 7677988887643100 0011233333322222223333333333332 22111223477888899999
Q ss_pred HHHHHHHhhcCCeeec-CCCccEEEEECCCC-ChHHHHHHHHHcCCeEecCCCCCC---CCCCCeEEEee------ccCh
Q 045431 350 DIIVETFNSLGFKVYG-GKNAPYVWVQFPGR-SSWDVFSEILEKTHVVTTPGSGFG---PGGEGFIRVSA------FGHR 418 (433)
Q Consensus 350 ~~l~~~l~~~g~~~~~-~~~g~~~~~~~~~~-~~~~~~~~l~~~~gi~v~~g~~f~---~~~~~~iRi~~------~~~~ 418 (433)
+.|.+.|.+.|+.++. ......+++++... .....++..+++.||.++--..++ +..++.|||.. ...+
T Consensus 445 kaLA~~L~~~G~~vv~ggTdnHlvLvDl~~~g~~G~~ae~~Le~~~I~~Nkn~iP~d~~~~~psGiRiGT~alT~rG~~e 524 (586)
T PLN02271 445 QALASALLRRKCRLVTGGTDNHLLLWDLTTLGLTGKNYEKVCEMCHITLNKTAIFGDNGTISPGGVRIGTPAMTSRGCLE 524 (586)
T ss_pred HHHHHHHHHCCCeEeeCCCCcceeeecCcccCCCHHHHHHHHHHcCeEeccccCCCCCCCCCCCcccccCHHHHhcCCCc
Confidence 9999999999999864 33445688998632 245667777888899985433222 22356799994 2257
Q ss_pred hHHHHHHHHHHHhh
Q 045431 419 GNVLEACKRFKHLY 432 (433)
Q Consensus 419 ~~l~~~l~~l~~~l 432 (433)
+|+++..+-|.+++
T Consensus 525 ~d~~~iA~~i~~~~ 538 (586)
T PLN02271 525 SDFETIADFLLRAA 538 (586)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888777776654
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.7e-15 Score=142.19 Aligned_cols=345 Identities=12% Similarity=0.101 Sum_probs=199.3
Q ss_pred HHHHHHhcCCCCceEEecCCCCC--C-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCc
Q 045431 52 RKAAHMLKYPDAEVISLGIGDTT--E-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGD 128 (433)
Q Consensus 52 ~~~~~~~~~~~~~~i~l~~g~~~--~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~ 128 (433)
.++......+++..||+..|... + ..+|.+.+++.+++.+.. ...+ +. +.+..+++.+....+ ..+.
T Consensus 42 a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~----~~~~-~~----~~~~~la~~l~~~~p-~~~~ 111 (428)
T PRK12389 42 GKGAYFYDVDGNKYIDYLAAYGPIITGHAHPHITKAITEAAENGV----LYGT-PT----ELEIEFAKMLKEAIP-SLEK 111 (428)
T ss_pred ccCCEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHHHhCC----ccCC-CC----HHHHHHHHHHHHhCC-CCcE
Confidence 34444455667889999766532 2 367899999999987531 1122 22 334455555543223 3478
Q ss_pred EEEcCChHHHHHHHHHh---cCCCCEEEEeCCCChhhhhhHHHhCCccccc-----cccc---ccceEEEeecCccCCcc
Q 045431 129 IFVSDGAKCDISRLQIV---FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQ-----KDAE---KYGKIEYMRCTAENGFF 197 (433)
Q Consensus 129 i~~~~G~~~al~~l~~l---~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~ 197 (433)
+++++++++|......+ .....+|+..+-+|++.............+. ..+. ...++..++.++...+.
T Consensus 112 v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 191 (428)
T PRK12389 112 VRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDIEALK 191 (428)
T ss_pred EEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCCCHHHHH
Confidence 99999999998863222 2345678888888888654333222110000 0000 01123333332111111
Q ss_pred cCCCCC-CCccEEEEcCC-CCccccCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEec
Q 045431 198 PDLSTV-ARTDIIFFCSP-NNPTGAAA-TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSS 274 (433)
Q Consensus 198 ~~~~~~-~~~~~i~l~~p-~nPtG~~~-~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S 274 (433)
..++.. .++.+|+ ..| +.-.|.+. +.+.+++|.++|++||+++|.||++..+ ..+.......++-.+| +-+
T Consensus 192 ~~l~~~~~~vaavi-~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~~~a~~~~gv~PD----ivt 265 (428)
T PRK12389 192 EALDKWGDEVAAVL-VEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMYGGAQDLLGVEPD----LTA 265 (428)
T ss_pred HHHHhcCCcEEEEE-EeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCcchhhHHhCCCCC----eee
Confidence 111111 3444544 455 55567654 6889999999999999999999999977 3321111111222244 237
Q ss_pred ccccccccccceeeeeccccccccCCcchhHHHH---HHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHH
Q 045431 275 FSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFN---RIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDI 351 (433)
Q Consensus 275 ~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 351 (433)
++|.+| .|+.+|.++++++++ +.+. .....++.+.++++.+++.+.|+.... +++.++.+++.++
T Consensus 266 ~gK~lg-gG~Pi~av~~~~~i~--------~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~---~~l~~~~~~~g~~ 333 (428)
T PRK12389 266 LGKIIG-GGLPIGAYGGRKDIM--------EQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQ---EGVYEKLDRLGAM 333 (428)
T ss_pred echhhc-CCCceeEEeEHHHHH--------hhhccCCCcccccCCccCHHHHHHHHHHHHHHhc---ccHHHHHHHHHHH
Confidence 899997 899999999988874 3332 122344556788888888888763221 2345556666666
Q ss_pred HHHHHhh----cCC--eeecCCCccEEEEECC--CC---------C---hHHHHHHHHHcCCeEecCCCCCCCCCCCeEE
Q 045431 352 IVETFNS----LGF--KVYGGKNAPYVWVQFP--GR---------S---SWDVFSEILEKTHVVTTPGSGFGPGGEGFIR 411 (433)
Q Consensus 352 l~~~l~~----~g~--~~~~~~~g~~~~~~~~--~~---------~---~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iR 411 (433)
+.+.|++ +++ .+... .|++ -+.+. .. + ...+...++ ++||.+.+.. .+.+.
T Consensus 334 l~~~L~~l~~~~~~~~~v~r~-~g~~-gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~~~ 404 (428)
T PRK12389 334 LEEGILEAAEKHGITITINRL-KGAL-TVYFTDEKVTNYDQAERSDGEAFGKFFKLML-NQGINLAPSK------YEAWF 404 (428)
T ss_pred HHHHHHHHHHhCCCCEEEEec-CcEE-EEEEeCCCCCChhhhcccCHHHHHHHHHHHH-HCCcEeecCC------CCCee
Confidence 6666654 343 23232 3332 33332 11 1 123444444 5699998742 12356
Q ss_pred EeeccChhHHHHHHHHHHHhhC
Q 045431 412 VSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 412 i~~~~~~~~l~~~l~~l~~~l~ 433 (433)
+++..++++++++++++.++++
T Consensus 405 ~~l~~t~e~id~~~~~l~~~l~ 426 (428)
T PRK12389 405 LTTAHTEEDIEETLEAVDRAFA 426 (428)
T ss_pred ecCCCCHHHHHHHHHHHHHHHH
Confidence 7777899999999999998763
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-14 Score=141.66 Aligned_cols=347 Identities=10% Similarity=0.023 Sum_probs=200.4
Q ss_pred HHHHhcCCCCceEEecCCCC-CCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEE
Q 045431 54 AAHMLKYPDAEVISLGIGDT-TEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFV 131 (433)
Q Consensus 54 ~~~~~~~~~~~~i~l~~g~~-~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~ 131 (433)
+......+++..||+..+.. .+. .+|.+.+++.+++.+... ....| . .+....+++.|....+...+.+++
T Consensus 63 G~~l~D~dG~~ylD~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~--~~~~~-~----~~~~~~lae~L~~~~p~~~~~v~f 135 (459)
T PRK06082 63 GIYIEDVDGKKYMDFHGNNVHQLGYGHPHVIEKVKEQMAKLPF--SPRRF-T----NETAIECAEKLTEIAGGELNRVLF 135 (459)
T ss_pred eeEEEECCCCEEEEcccHhhcccCCCCHHHHHHHHHHHHhCCC--ccCcc-C----CHHHHHHHHHHHHhCCCCCCEEEE
Confidence 33344456778999863322 233 678999999999976431 11122 1 244445555554322333478999
Q ss_pred cCChHHHHHHHHHhc---CCCCEEEEeCCCChhhhh-hHHHhCCcccccccccccceEEEeecC--------ccCC----
Q 045431 132 SDGAKCDISRLQIVF---GSNVTMAVQDPSYPAYVD-SSVIMGQTGEFQKDAEKYGKIEYMRCT--------AENG---- 195 (433)
Q Consensus 132 ~~G~~~al~~l~~l~---~~gd~Vl~~~p~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~--------~~~~---- 195 (433)
+++++++..+...+. ....+|+....+|++... .+...+.......++.....+..++.. +.+.
T Consensus 136 ~~sGseAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (459)
T PRK06082 136 APGGTSAIGMALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVH 215 (459)
T ss_pred CCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHH
Confidence 999999998643332 344778888888877643 322222211101111111122222211 0000
Q ss_pred ----cccCCCCCCCccEEEEcCC-CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceE
Q 045431 196 ----FFPDLSTVARTDIIFFCSP-NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAI 270 (433)
Q Consensus 196 ----~~~~~~~~~~~~~i~l~~p-~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi 270 (433)
+...++...++.+ ++..| ++..+...+.+.+++|.++|++||+++|.||++..+...|.......+.-.+| ++
T Consensus 216 ~~~~l~~~i~~~~~vAa-vIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv~PD-iv 293 (459)
T PRK06082 216 YADYLEYVIEKEGGIGA-FIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIEPD-IL 293 (459)
T ss_pred HHHHHHHHHhcCCCEEE-EEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhhCCCCC-EE
Confidence 0000111134444 44566 44444567889999999999999999999999998755554322222322344 23
Q ss_pred EEecccccccccc-cceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHH
Q 045431 271 ETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENT 349 (433)
Q Consensus 271 ~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 349 (433)
+++|.+| .| +.+|.+++++++. ..........+.+.++++.+++.+.|+.... +++.++.+++.
T Consensus 294 ---~~gKgl~-gG~~P~~av~~~~~i~--------~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~---~~l~~~~~~~g 358 (459)
T PRK06082 294 ---CIGKGLG-GGLVPIAAMITKDKYN--------TAAQISLGHYTHEKSPLGCAAALATIEVIEQ---EGLLEKVKADS 358 (459)
T ss_pred ---Eeccccc-CCCCcceEEEEcHHHH--------hhccCCCCCCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHH
Confidence 4899998 77 5999999987763 1111101113556788888888887763211 23455666666
Q ss_pred HHHHHHHhhc----CC-eeecCCCccEEEEECCCC-----C----hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe--
Q 045431 350 DIIVETFNSL----GF-KVYGGKNAPYVWVQFPGR-----S----SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS-- 413 (433)
Q Consensus 350 ~~l~~~l~~~----g~-~~~~~~~g~~~~~~~~~~-----~----~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~-- 413 (433)
+++.+.|+++ ++ .-+. ..|.++.+.+... . ...+...++ ++||.+.+. +.+.+|++
T Consensus 359 ~~l~~~L~~l~~~~~~i~~vr-G~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~-~~Gvl~~~~------~~~~i~~~Pp 430 (459)
T PRK06082 359 QFMRERLLEMKAKYPLIGDVR-GIGLLWGVELVTDRHTKERAYDEAEAVLYRCL-NNGLSFKVS------QGNVIQLSPP 430 (459)
T ss_pred HHHHHHHHHHHhhCCCeeeee-eccceeEEEEccCccccCccHHHHHHHHHHHH-hCCCEEEec------CCCEEEEeCC
Confidence 6666666553 32 1122 2466666666411 0 223444555 459998762 23679999
Q ss_pred eccChhHHHHHHHHHHHhh
Q 045431 414 AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 414 ~~~~~~~l~~~l~~l~~~l 432 (433)
+..++++++++++++.+++
T Consensus 431 l~it~~eid~~~~~l~~~l 449 (459)
T PRK06082 431 LIITREELTQALAILEEAI 449 (459)
T ss_pred CccCHHHHHHHHHHHHHHH
Confidence 5679999999999998876
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.2e-15 Score=132.81 Aligned_cols=337 Identities=13% Similarity=0.100 Sum_probs=222.0
Q ss_pred CceEEecCCCC-CCCChHHHHHHHHHHHhhcccCCCCCC--CCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHH
Q 045431 63 AEVISLGIGDT-TEPIPEVITSALAKRSYALSTQEGYSG--YGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDI 139 (433)
Q Consensus 63 ~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~--Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al 139 (433)
..+--.+++++ ...-.|.+.+|+++.+.+++...+-.+ -+...-...|.+.+|+. .-++..+++++ +--|.
T Consensus 171 k~VtVWCSNDYLgms~Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~L-----HqK~aALlFsS-CfVAN 244 (570)
T KOG1360|consen 171 KKVTVWCSNDYLGMSRHPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADL-----HQKEAALLFSS-CFVAN 244 (570)
T ss_pred CceEEEecCccccccCChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHH-----hcCcceeeeee-eeecc
Confidence 34555677765 355789999999999998763332221 12334456778888876 34544444443 33333
Q ss_pred HH-HHHh--cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCC--CCccEEEEcCC
Q 045431 140 SR-LQIV--FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV--ARTDIIFFCSP 214 (433)
Q Consensus 140 ~~-l~~l--~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~p 214 (433)
+. +..+ .=||..|.-++-.|.+....++..+. +-..+..++-+.+..-++.. .-+|.|-+-+.
T Consensus 245 DstLftLak~lpgcei~SD~gNHASMI~GIrns~v------------~K~IFrHND~~hL~~lL~~~~~svPKivAFEtV 312 (570)
T KOG1360|consen 245 DSTLFTLAKKLPGCEIFSDEGNHASMIQGIRNSRV------------PKHIFRHNDLDHLEQLLQSSPKSVPKIVAFETV 312 (570)
T ss_pred chHHHHHHHHCCCcEEeccccchHHHHHHhhhcCC------------cceeeccCCHHHHHHHHHhCCCCCCceEEEeee
Confidence 32 3333 34888999899899888887777773 33334443222211112222 35777777788
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCC-CcceEEEecccccccccccceeeeeccc
Q 045431 215 NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGA-KEVAIETSSFSKYAGFTGVRLGWTVIPK 293 (433)
Q Consensus 215 ~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~-~~~vi~i~S~sK~~~~~G~r~G~l~~~~ 293 (433)
|..+|.+.| +++|++++++||.+-++||+|+-..|+.....+.+-++. +...|.-|++.|+||+-| ||+.+..
T Consensus 313 hSM~Gavcp---leelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGcVG---GYIAat~ 386 (570)
T KOG1360|consen 313 HSMDGAVCP---LEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGCVG---GYIAATR 386 (570)
T ss_pred eccCCCcCC---HHHHHHHHHHhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhccccc---ceehhhh
Confidence 999999999 889999999999999999999976666544444444433 223378899999999999 9999999
Q ss_pred cccccCCcchhHHHHHHHhhccCC--CcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccE
Q 045431 294 ELLFSDGFPVAKDFNRIVCTCFNG--ASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPY 371 (433)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~ 371 (433)
.++ +.++.+......+ .++.....++++.+...-+.-..++..-+++..++++.|.+.|+.+.+. ..-.
T Consensus 387 ~Lv--------DmiRSyAaGFIFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~GiPVi~~-pSHI 457 (570)
T KOG1360|consen 387 KLV--------DMIRSYAAGFIFTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMELGIPVIPN-PSHI 457 (570)
T ss_pred hHH--------HHHHHhcCceEEecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcCCcccCC-Ccce
Confidence 885 6666555433222 2333333344444311111125566677788889999999999999864 4455
Q ss_pred EEEECC-CCChHHHHHHHHHcCCeEecCCCCCC-CCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 372 VWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFG-PGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 372 ~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~-~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
+-+++. ...+.+....|+.++||.+..-..-. +.++..+||+- ..+++.++.+++.|..++
T Consensus 458 iPv~vgda~l~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~HT~~mm~~lv~~l~~vw 522 (570)
T KOG1360|consen 458 IPVRVGDAALAKQASDILISKHNIYVQAINYPTVARGTERLRIAPTPHHTPQMMNILVNALLDVW 522 (570)
T ss_pred eeeeccCHHHHHHHHHHHHHhcCeEEEeccCCcccccceeeecCCCCCCCHHHHHHHHHHHHHHH
Confidence 666665 23456778888999999997654322 44667899983 458888999999888765
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-14 Score=140.86 Aligned_cols=350 Identities=10% Similarity=0.057 Sum_probs=202.1
Q ss_pred HHHHHHhcCCCCceEEecCCCC--C-CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCc
Q 045431 52 RKAAHMLKYPDAEVISLGIGDT--T-EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGD 128 (433)
Q Consensus 52 ~~~~~~~~~~~~~~i~l~~g~~--~-~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~ 128 (433)
..+......+++..||+..|.. . -..+|.+.+++.+++.+.........| ..+.+.++++.|.+..+.+.+.
T Consensus 37 a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~-----~~~~~~~lae~L~~~~p~~~~~ 111 (460)
T PRK06105 37 GEGIYVYDDAGKRYIEGMAGLWSVALGFSEQRLVEAAARQMKKLPFYHTFSHK-----SHGPVIDLAEKLVAMAPVPMSK 111 (460)
T ss_pred eeEEEEEECCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHHhCCCeeccccc-----CCHHHHHHHHHHHHhCCCCCCE
Confidence 3334444566788999977742 2 246899999999999764210111112 2344445555554422333468
Q ss_pred EEEcCChHHHHHHHHHhc-------C-C-CCEEEEeCCCChhhhhhHHHh-CCcccccccccccceEEEeecCccCCc--
Q 045431 129 IFVSDGAKCDISRLQIVF-------G-S-NVTMAVQDPSYPAYVDSSVIM-GQTGEFQKDAEKYGKIEYMRCTAENGF-- 196 (433)
Q Consensus 129 i~~~~G~~~al~~l~~l~-------~-~-gd~Vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~-- 196 (433)
+++++++++|..+...+. . + ..+|+..+-+|++.......+ +.......++.....+..++......+
T Consensus 112 v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 191 (460)
T PRK06105 112 VFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGL 191 (460)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCccccccc
Confidence 999999999998632221 1 2 357888888887754322221 211111111111112222222110000
Q ss_pred ------------ccCCCC------CCCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCC
Q 045431 197 ------------FPDLST------VARTDIIFFCSP-NNPTGAA-ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNP 256 (433)
Q Consensus 197 ------------~~~~~~------~~~~~~i~l~~p-~nPtG~~-~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~ 256 (433)
..+++. ..++.+|+ ..| +.-.|.. .+++.++++.++|++||+++|.||++..+...|..
T Consensus 192 ~~~~~~~~~~~~~~~le~~~~~~~~~~iAavI-vEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~ 270 (460)
T PRK06105 192 PGESEEAFATRLANELEALILAEGPDTIAAFI-GEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNM 270 (460)
T ss_pred CCCChHHHHHHHHHHHHHHHHHcCCCceEEEE-EccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCchh
Confidence 001111 12445544 456 5555665 58899999999999999999999999877555543
Q ss_pred CcccccCCCCcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHH-------HHhhccCCCcHHHHHHHHH
Q 045431 257 RSIFEIPGAKEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNR-------IVCTCFNGASNISQAGGLA 328 (433)
Q Consensus 257 ~~~~~~~~~~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~q~~~~~ 328 (433)
.....++-.+| +.+++|.++ .| +.+|.+++++++. +.+.. ....++.+.++++.+++.+
T Consensus 271 f~~~~~~v~PD----i~~~gK~lg-gG~~P~~av~~~~~i~--------~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a 337 (460)
T PRK06105 271 FGCETFGIKPD----ILVMSKQLS-SSYQPLSAVLMNEKVY--------DPIADESGKIGTFGHGFTASGHPVAAAVALE 337 (460)
T ss_pred hhHHhcCCCCC----eeeeecccc-cCcccceEEEEcHHHH--------HHHhcccccCcccccCCCCCCCHHHHHHHHH
Confidence 33222322344 337899998 67 6899999998874 33321 1134566678888888887
Q ss_pred hcCcCChhHHHHHHHHHHHHHHHHHHHHhhc---CC-eeecCCCccEEEEECCCC-------C-----hHHHHHHHHHcC
Q 045431 329 CLSPEGFKAVHEVIGFYKENTDIIVETFNSL---GF-KVYGGKNAPYVWVQFPGR-------S-----SWDVFSEILEKT 392 (433)
Q Consensus 329 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---g~-~~~~~~~g~~~~~~~~~~-------~-----~~~~~~~l~~~~ 392 (433)
.|+.... +++.+..+++.+++.+.|+++ ++ .-+. .-|+++-+.+... + ...+...+ .++
T Consensus 338 ~L~~i~~---~~l~~~v~~~g~~l~~~L~~l~~~~~v~~vr-G~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~~-~~~ 412 (460)
T PRK06105 338 NLAIIEE---RDLVGNAAERGARLQARLRALADHPLVGEVR-GVGLIAAVELVADKATKTPFEPPGKVGARANAAA-HEH 412 (460)
T ss_pred HHHHHHh---ccHHHHHHHHHHHHHHHHHHhhcCCCeEEEE-ecceEEEEEEecCcccCCCCCchhHHHHHHHHHH-HHC
Confidence 7763221 234555666666666666554 21 1122 2456655655310 0 12344444 456
Q ss_pred CeEecCCCCCCCCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 393 HVVTTPGSGFGPGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 393 gi~v~~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
||.+.+. .+.+||+ +..+++++++++++|.+++
T Consensus 413 Gvl~~~~-------g~~i~l~Ppl~it~~eid~~~~~l~~~l 447 (460)
T PRK06105 413 GVISRAM-------GDTLAFCPPLIITAAQVDEMVDRFGRAL 447 (460)
T ss_pred CeEEEec-------CCEEEEECCCccCHHHHHHHHHHHHHHH
Confidence 9999763 1479998 4569999999999998876
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-14 Score=130.90 Aligned_cols=338 Identities=17% Similarity=0.174 Sum_probs=220.6
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCC--C-CCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYS--G-YGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDIS 140 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~-Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~ 140 (433)
+.|+|=-.++ -.++.+.++.-..+.+... .++. + |+-..-..++.....+..++.++++-.||...||+++.+.
T Consensus 27 ~~ieLIASEN--~~S~aV~~A~gS~ltnKYA-EGyPgkRyYgGce~VD~vE~laierak~LFga~~anVQPhSGs~AN~a 103 (413)
T COG0112 27 EHIELIASEN--FTSPAVMEAQGSDLTNKYA-EGYPGKRYYGGCEYVDEVEELAIERAKKLFGAEYANVQPHSGSQANQA 103 (413)
T ss_pred hceeeeeccc--cCCHHHHHHHhhhhhhccc-cCCCCccccCCCeeHHHHHHHHHHHHHHHhCCCccccCCCCchHHHHH
Confidence 3577765554 2677888888777764322 2222 3 4333344444444444444567888889999999999999
Q ss_pred HHHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC------CCCccEEEEcCC
Q 045431 141 RLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST------VARTDIIFFCSP 214 (433)
Q Consensus 141 ~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~l~~p 214 (433)
.+.++++|||+|+-.+..+.++.......+..|. +.+.+.++++.+.+ ..|.+. ..+||+|+.-..
T Consensus 104 v~~All~pGDtimgm~l~~GGHltHg~~v~~sG~-------~~~~v~Y~vd~et~-~IDyD~~~k~a~e~kPK~ii~G~S 175 (413)
T COG0112 104 VYLALLQPGDTIMGLDLSHGGHLTHGSPVNFSGK-------LFNVVSYGVDPETG-LIDYDEVEKLAKEVKPKLIIAGGS 175 (413)
T ss_pred HHHHHcCCCCeEecccCCCCCcccCCCCCCccce-------eEEeEecccccccC-ccCHHHHHHHHHHhCCCEEEECcc
Confidence 9999999999999998888876543322222221 24788888886643 334332 368998776333
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCCEEEEecccc-ccccCCC-CCcccccCCCCcceEEEecccccccccccceeeeecc
Q 045431 215 NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYA-LYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIP 292 (433)
Q Consensus 215 ~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~-~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~ 292 (433)
.+|- .+ +++++.++|.+.|.++++|-+|- ++...|. |.|+.. ..|+.+|.+|+| +|-|-|.+.++
T Consensus 176 aY~r--~i---d~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~~------AdvVTtTTHKTl--rGPrGG~Il~~ 242 (413)
T COG0112 176 AYSR--PI---DFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPH------ADVVTTTTHKTL--RGPRGGIILTN 242 (413)
T ss_pred cccc--cc---CHHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCCc------cceEeCCcccCC--CCCCceEEEec
Confidence 3332 22 48889999999999999999985 4655554 444432 238899999998 89999999998
Q ss_pred ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-hHHHHHHHHHHHHHHHHHHHHhhcCCeeecC-CCcc
Q 045431 293 KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-KAVHEVIGFYKENTDIIVETFNSLGFKVYGG-KNAP 370 (433)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~g~ 370 (433)
++.+ .+++++.......+.+.+.-.|+.+.-..+.. ...+...+++-++++.|.+.|.+.|++++.. ...-
T Consensus 243 ~eel-------~kkin~aVFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~G~~vvsGgTdnH 315 (413)
T COG0112 243 DEEL-------AKKINSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKERGFKVVSGGTDNH 315 (413)
T ss_pred cHHH-------HHHhhhhcCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHcCCeEecCCccce
Confidence 7443 46666544444444443333333322111111 2347778888899999999999999998752 2233
Q ss_pred EEEEECCC-CChHHHHHHHHHcCCeEec----CCCCCCCCCCCeEEEee------ccChhHHHHHHHHHHHhh
Q 045431 371 YVWVQFPG-RSSWDVFSEILEKTHVVTT----PGSGFGPGGEGFIRVSA------FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 371 ~~~~~~~~-~~~~~~~~~l~~~~gi~v~----~g~~f~~~~~~~iRi~~------~~~~~~l~~~l~~l~~~l 432 (433)
.+.+++.. .-.......++.+.||.++ |.+.-++..+..|||.. ...++++++..+-|.+++
T Consensus 316 l~lVDl~~~~~~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl 388 (413)
T COG0112 316 LVLVDLRSKGLTGKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVL 388 (413)
T ss_pred EEEEEcccCCCCHHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHHHHHHHHH
Confidence 56778762 2245566677788899984 33322233456799994 125788888888887765
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-14 Score=141.70 Aligned_cols=348 Identities=10% Similarity=0.057 Sum_probs=199.1
Q ss_pred HHHHHHhcCCCCceEEecCCCC--CC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCc
Q 045431 52 RKAAHMLKYPDAEVISLGIGDT--TE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGD 128 (433)
Q Consensus 52 ~~~~~~~~~~~~~~i~l~~g~~--~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~ 128 (433)
..+......+++..||+..|.- .+ ..+|.+.+++.+++.+... ....| ..+.+..+|+.|.+..+...+.
T Consensus 42 a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~--~~~~~-----~~~~~~~lae~L~~~~p~~~~~ 114 (451)
T PRK06062 42 AEGSYVWDYEGRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAARLCT--VAPAH-----ANDARSEAARLIAERAPGDLSK 114 (451)
T ss_pred ceeeEEEECCCCEEEEcccCHHhhcCCCCCHHHHHHHHHHHHhcCC--cCCcc-----CCHHHHHHHHHHHHhCCCCCCE
Confidence 3444455667788999977642 22 3678999999999876421 11122 2333445555554322333479
Q ss_pred EEEcCChHHHHHHHHH---hcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccC--Cc-------
Q 045431 129 IFVSDGAKCDISRLQI---VFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAEN--GF------- 196 (433)
Q Consensus 129 i~~~~G~~~al~~l~~---l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~------- 196 (433)
+++++++++|...... ......+|+..+.+|++.............+.........+..++..... .+
T Consensus 115 v~f~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 194 (451)
T PRK06062 115 VFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEE 194 (451)
T ss_pred EEEcCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHH
Confidence 9999999999886322 22344678888888888654443332111110000001112222111000 00
Q ss_pred -----ccCCC----C--CCCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccC
Q 045431 197 -----FPDLS----T--VARTDIIFFCSP-NNPTGAA-ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIP 263 (433)
Q Consensus 197 -----~~~~~----~--~~~~~~i~l~~p-~nPtG~~-~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~ 263 (433)
..+++ . ..++.+|+ ..| +.-.|.. .+.+.+++|.++|++||+++|.||++..|...+.......+.
T Consensus 195 ~~~~~~~~le~~l~~~~~~~iAavi-iEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~~~~g 273 (451)
T PRK06062 195 ECERALAHLERVIELEGPSTIAAIL-LESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFG 273 (451)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEE-EccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHHHHhcC
Confidence 00111 1 12445544 456 4445665 478899999999999999999999999875544322222222
Q ss_pred CCCcceEEEeccccccccccc-ceeeeeccccccccCCcchhHHHHH--HHhhccCCCcHHHHHHHHHhcCcCChhHHHH
Q 045431 264 GAKEVAIETSSFSKYAGFTGV-RLGWTVIPKELLFSDGFPVAKDFNR--IVCTCFNGASNISQAGGLACLSPEGFKAVHE 340 (433)
Q Consensus 264 ~~~~~vi~i~S~sK~~~~~G~-r~G~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~ 340 (433)
-.+| +.+|+|.+| .|+ .+|.+++++++. +.+.. +...++.+.++++.+++.+.|+.... ++
T Consensus 274 v~PD----i~t~gK~lg-gG~~Pigav~~~~~i~--------~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~---~~ 337 (451)
T PRK06062 274 VVPD----LITFAKGVN-SGYVPLGGVAISEAIA--------ATFADRPYPGGLTYSGHPLACAAAVATINAMEE---EG 337 (451)
T ss_pred CCCC----eeeechhhh-cCCcCcEEEEEcHHHH--------HHhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh---cC
Confidence 2344 347899998 784 999999988774 33321 12334556788888888888763221 22
Q ss_pred HHHHHHHHH-HHHHHHHhhc----CC-eeecCCCccEEEEECCC--C-------------ChHHHHHHHHHcCCeEecCC
Q 045431 341 VIGFYKENT-DIIVETFNSL----GF-KVYGGKNAPYVWVQFPG--R-------------SSWDVFSEILEKTHVVTTPG 399 (433)
Q Consensus 341 ~~~~~~~~~-~~l~~~l~~~----g~-~~~~~~~g~~~~~~~~~--~-------------~~~~~~~~l~~~~gi~v~~g 399 (433)
+.++.++.- +++.+.|+++ +. .-+.. .|.++-+.+.. . ....+...++ ++||.+.+.
T Consensus 338 l~~~~~~~G~~~l~~~L~~l~~~~~~v~~vrG-~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gvl~~~~ 415 (451)
T PRK06062 338 IVENAARIGAEVLGPGLRELAERHPSVGEVRG-LGVFWALELVADRETREPLAPYGASSAAMAAVKAACK-ERGLLPFVN 415 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcEEeEec-cccEEEEEEcccccccCCCcccchhhHHHHHHHHHHH-HCCcEEeec
Confidence 344444443 3455555443 32 11222 45555555531 0 0224444544 559998642
Q ss_pred CCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 400 SGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 400 ~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
.+.+||+. ..+++++++++++|.+++
T Consensus 416 -------~~~lrl~ppl~~t~~eid~~~~~l~~~l 443 (451)
T PRK06062 416 -------GNRIHVVPPCTVTEDEVREGLAILDAAL 443 (451)
T ss_pred -------CCEEEEECCccCCHHHHHHHHHHHHHHH
Confidence 25799983 679999999999998876
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-14 Score=142.22 Aligned_cols=350 Identities=11% Similarity=0.080 Sum_probs=201.4
Q ss_pred HHHHHHHhcCCCCceEEecCCCC--CC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCC---
Q 045431 51 RRKAAHMLKYPDAEVISLGIGDT--TE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGI--- 124 (433)
Q Consensus 51 ~~~~~~~~~~~~~~~i~l~~g~~--~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~--- 124 (433)
+..+......+++..||+..|.- .+ ..+|.+.+++.+++.+... .....+. .+.+..+++.+....+.
T Consensus 52 ~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~l~~-~~~~~~~-----~~~~~~lae~L~~~~p~~~~ 125 (472)
T PRK08742 52 RGEGAWLVGHDGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELEQ-VMLAGFT-----HEPAVQLAEQLLAIAPRQDG 125 (472)
T ss_pred ecccCEEEeCCCCEEEEcCccHHhccCCCCCHHHHHHHHHHHHhCCC-ccccccC-----CHHHHHHHHHHHHhCCCccc
Confidence 34444455567788999977642 22 3678899999998875421 1111221 23345566665432221
Q ss_pred --CCCcEEEcCChHHHHHHHHHh---c-----CC-CCEEEEeCCCChhhhhhHHHhCCcccc-cccccccceEEEeecCc
Q 045431 125 --EEGDIFVSDGAKCDISRLQIV---F-----GS-NVTMAVQDPSYPAYVDSSVIMGQTGEF-QKDAEKYGKIEYMRCTA 192 (433)
Q Consensus 125 --~~~~i~~~~G~~~al~~l~~l---~-----~~-gd~Vl~~~p~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~ 192 (433)
+.+.+++++++++|......+ . ++ ..+|+..+.+|++........+....+ ..+.....++..+|...
T Consensus 126 ~~~~~~v~f~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~ 205 (472)
T PRK08742 126 RAPLSKVFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPD 205 (472)
T ss_pred CCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCC
Confidence 236899999999998853222 1 12 367888999998865443333221111 11111111222333211
Q ss_pred cC----Cc---------ccC----CCC-CCCccEEEEcCC--CCcccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccc
Q 045431 193 EN----GF---------FPD----LST-VARTDIIFFCSP--NNPTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYI 251 (433)
Q Consensus 193 ~~----~~---------~~~----~~~-~~~~~~i~l~~p--~nPtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~ 251 (433)
.. +. ... ++. ..++.+|+ ..| ++-.|. ..+++.++++.++|++||+++|.||++..|.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iAAvI-~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfG 284 (472)
T PRK08742 206 AYLAEPGQSAEDYALQAADALQALFEQSPGEICALI-LEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFG 284 (472)
T ss_pred ccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEE-EccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCC
Confidence 00 00 000 111 13455544 466 566676 5578899999999999999999999999886
Q ss_pred cCCCCCcccccCCCCcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHH------HHhhccCCCcHHHHH
Q 045431 252 SDDNPRSIFEIPGAKEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNR------IVCTCFNGASNISQA 324 (433)
Q Consensus 252 ~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~q~ 324 (433)
..|.......++-.+| ++ +++|.++ .| +.+|.+++++++. +.+.. +...++.+.++++.+
T Consensus 285 RtG~~~a~e~~gv~PD-iv---~~gKgl~-gG~~Plaav~~~~ei~--------~~~~~~~~~~~~~h~~T~~gnpl~~A 351 (472)
T PRK08742 285 RTGTLFACEQAGVMPD-LL---CLSKGLT-GGFLPLSAVLATQQLY--------DAFLDDSRERAFLHSHSYTGNPLACA 351 (472)
T ss_pred CCccchHHHhcCCCCC-EE---EEccccc-CCCCCcceeeccHHHH--------HHhhccCccCccCcCCCCCccHHHHH
Confidence 6654433333332345 33 5799997 88 4999999998874 33321 123455667888888
Q ss_pred HHHHhcCcCChhHHHHHHHHHHHHHHHH---HHHHhhcC-CeeecCCCccEEEEECCC--C-----C-----hHHHHHHH
Q 045431 325 GGLACLSPEGFKAVHEVIGFYKENTDII---VETFNSLG-FKVYGGKNAPYVWVQFPG--R-----S-----SWDVFSEI 388 (433)
Q Consensus 325 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l---~~~l~~~g-~~~~~~~~g~~~~~~~~~--~-----~-----~~~~~~~l 388 (433)
++.+.|+-...+ ++.+..++.-+++ .+.+.++. +.-+. ..|+++-+.+.. . . ...+...+
T Consensus 352 aa~a~L~~i~~~---~l~~~~~~~g~~l~~~~~~~~~~~~i~dvR-G~Gl~~giel~~~~~~~~~~~~~~~~~~~~~~~~ 427 (472)
T PRK08742 352 AALATLDIFADD---DVIARNQPTAARMTQLAAQIGEHPHVADVR-QAGMVVAFELTRGGNKRTPFPPAARVGLHAYRAA 427 (472)
T ss_pred HHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHhcCCCeeeEe-ccceEEEEEeccCccccccCCchhHHHHHHHHHH
Confidence 888887632221 2222233333333 33344443 22222 246666666631 1 0 12344555
Q ss_pred HHcCCeEecCCCCCCCCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 389 LEKTHVVTTPGSGFGPGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 389 ~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
+ ++||.+.+. + +.+||. +..+++++++++++|.+++
T Consensus 428 ~-~~Gll~~~~------g-~vi~~~PpL~it~~ei~~~~~~l~~~l 465 (472)
T PRK08742 428 L-ARGVVLRPL------G-DVLYWMPPYCVDEAQLALLADTTRHAI 465 (472)
T ss_pred H-HCCeEEEec------C-CEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 5 459999762 1 579999 5679999999999999876
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.1e-14 Score=137.61 Aligned_cols=191 Identities=15% Similarity=0.146 Sum_probs=126.2
Q ss_pred eEEecCCCCCCCC-----hHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHH
Q 045431 65 VISLGIGDTTEPI-----PEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDI 139 (433)
Q Consensus 65 ~i~l~~g~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al 139 (433)
+..|+.|.++.+. +..-.+++.+.+.. ....+++ -..+|++++|+++ +. +++++++|+++++
T Consensus 25 ~~~~~~~~~~ip~~~~~~~~~~~~a~~~~~~~-----~~~~~G~--~~~~fe~~lA~~~----g~--~~~v~~~sGt~al 91 (438)
T PRK15407 25 PKPFVPGKSPIPPSGKVIDAKELQNLVDASLD-----FWLTTGR--FNDAFEKKLAEFL----GV--RYALLVNSGSSAN 91 (438)
T ss_pred cccccCCCCCCCcCccCCCHHHHHHHHHHHHh-----CcccCCh--hHHHHHHHHHHHh----CC--CeEEEECCHHHHH
Confidence 3446888876543 22333444444432 1122322 3589999999997 54 4688888888888
Q ss_pred HH-HHHh---------cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCC---C--CC
Q 045431 140 SR-LQIV---------FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS---T--VA 204 (433)
Q Consensus 140 ~~-l~~l---------~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~ 204 (433)
.+ +..+ ++|||+|+++.|+|+.+...+...| ..++.++++.+ .+..+++ + .+
T Consensus 92 ~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G------------~~pv~vdvd~~-~~~id~~~le~~i~~ 158 (438)
T PRK15407 92 LLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNG------------LVPVFVDVELP-TYNIDASLLEAAVSP 158 (438)
T ss_pred HHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcC------------CEEEEEecCCC-cCCcCHHHHHHHcCc
Confidence 76 5443 4899999999999999998888888 46777777542 2222322 2 36
Q ss_pred CccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccc-cCCCCCcccccCCCCcceEEEecc--cccccc
Q 045431 205 RTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYI-SDDNPRSIFEIPGAKEVAIETSSF--SKYAGF 281 (433)
Q Consensus 205 ~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~-~~~~~~~~~~~~~~~~~vi~i~S~--sK~~~~ 281 (433)
++++|+++++ +|... ++++|.++|++||++||+|++|+... +.+. .+.++ .+ +.+.|| +|.+.
T Consensus 159 ~tkaVi~~~~---~G~p~---dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~--~~G~~---gd--~~~fSf~~~k~~~- 224 (438)
T PRK15407 159 KTKAIMIAHT---LGNPF---DLAAVKAFCDKHNLWLIEDNCDALGSTYDGR--MTGTF---GD--IATLSFYPAHHIT- 224 (438)
T ss_pred CCeEEEEeCC---CCChh---hHHHHHHHHHHCCCEEEEECccchhhhcCCe--eeecc---Cc--eEEEeCCCCCCcc-
Confidence 7899888754 55533 48999999999999999999998532 2222 22222 12 555666 46664
Q ss_pred cccceeeeecccccc
Q 045431 282 TGVRLGWTVIPKELL 296 (433)
Q Consensus 282 ~G~r~G~l~~~~~~~ 296 (433)
.|- -|+++++++.+
T Consensus 225 ~ge-GG~l~t~d~~l 238 (438)
T PRK15407 225 MGE-GGAVFTNDPLL 238 (438)
T ss_pred ccC-ceEEEECCHHH
Confidence 343 48999988776
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=9e-15 Score=141.68 Aligned_cols=350 Identities=10% Similarity=0.048 Sum_probs=202.8
Q ss_pred HHHHHHhcCCCCceEEecCCCC--CC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCc
Q 045431 52 RKAAHMLKYPDAEVISLGIGDT--TE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGD 128 (433)
Q Consensus 52 ~~~~~~~~~~~~~~i~l~~g~~--~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~ 128 (433)
.++......+++..||+..|.. .+ ..++.+.+++.+++.+... .....+ . .+....+++.+.+..+...+.
T Consensus 29 a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~-~~~~~~-~----~~~~~~lae~L~~~~p~~~~~ 102 (422)
T PRK05630 29 TDGVFLTLEDGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMSH-VMFGGL-T----HEPAIKLTRKLLNLTDNGLDH 102 (422)
T ss_pred ceeeEEEECCCCEEEEcchhHHHhcCCCCCHHHHHHHHHHHHhCCC-cccCCc-C----CHHHHHHHHHHHhhCCCCcCE
Confidence 3444445566788999976643 22 3678999999999976421 111111 1 223344444444322323478
Q ss_pred EEEcCChHHHHHH-HH---Hhc-C---C-CCEEEEeCCCChhhhhhHHHh-CCcccc-cccccccceEEEeecCccCC--
Q 045431 129 IFVSDGAKCDISR-LQ---IVF-G---S-NVTMAVQDPSYPAYVDSSVIM-GQTGEF-QKDAEKYGKIEYMRCTAENG-- 195 (433)
Q Consensus 129 i~~~~G~~~al~~-l~---~l~-~---~-gd~Vl~~~p~~~~~~~~~~~~-g~~~~~-~~~~~~~~~~~~~~~~~~~~-- 195 (433)
+++++++++|.+. +. ... . + ..+|+..+.+|++.......+ +....+ ..++..+.....+|......
T Consensus 103 v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 182 (422)
T PRK05630 103 VFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPVRGSS 182 (422)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCcccCCC
Confidence 9999999999885 31 111 1 2 357888899898854333222 211100 00111111222232221000
Q ss_pred c--c----cCCCC--CCCccEEEEcCC--CCccccC-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCC
Q 045431 196 F--F----PDLST--VARTDIIFFCSP--NNPTGAA-ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPG 264 (433)
Q Consensus 196 ~--~----~~~~~--~~~~~~i~l~~p--~nPtG~~-~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 264 (433)
. . ..++. ..++.+|+ ..| +.-.|+. .+.+.+++|.++|++||+++|.||++..+...+.........-
T Consensus 183 ~~~~~~~~~~~~~~~~~~iAAvi-~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv 261 (422)
T PRK05630 183 PQEISEYLRSLELLIDETVAAII-IEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATLAAGV 261 (422)
T ss_pred hHHHHHHHHHHHHHHhhceEEEE-EechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhhHHHhcCC
Confidence 0 0 00111 13455554 455 6666764 5678999999999999999999999987754443322222222
Q ss_pred CCcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHH------HHhhccCCCcHHHHHHHHHhcCcCChhH
Q 045431 265 AKEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNR------IVCTCFNGASNISQAGGLACLSPEGFKA 337 (433)
Q Consensus 265 ~~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~ 337 (433)
.+| ++ +++|.++ .| ..+|++++++++. +.+.. +....+.+.++++.+++.+.|+....
T Consensus 262 ~PD-i~---t~gK~l~-gG~~p~~av~~~~~i~--------~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~-- 326 (422)
T PRK05630 262 TPD-IM---CVGKALT-GGFMSFAATLCTDKVA--------QLISTPNGGGALMHGPTFMANPLACAVAHASLEIIET-- 326 (422)
T ss_pred CCC-ee---eeechhh-cCccccceeeccHHHH--------HHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHh--
Confidence 344 23 7899996 77 5899999998874 33321 12345566788888888887763221
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc----CCeeecCCCccEEEEECCCC-ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEE
Q 045431 338 VHEVIGFYKENTDIIVETFNSL----GFKVYGGKNAPYVWVQFPGR-SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRV 412 (433)
Q Consensus 338 ~~~~~~~~~~~~~~l~~~l~~~----g~~~~~~~~g~~~~~~~~~~-~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi 412 (433)
+...++++++.+++.+.|+++ .+.-+. ..|+++-+.+... ....+...++ ++||.+.+. + +.+||
T Consensus 327 -~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vR-g~Gl~~~ie~~~~~~~~~~~~~~~-~~Gl~~~~~------g-~~l~~ 396 (422)
T PRK05630 327 -GMWRKQVKRIEAELIAGLSPLAHLPGVADVR-VLGAIGVVEMEQPVDMEEATQAAV-DHGVWLRPF------G-RLVYV 396 (422)
T ss_pred -CcHHHHHHHHHHHHHHHHHHhhcCCCeeeee-ccccEEEEEECCcccHHHHHHHHH-HCCeEEEec------C-CEEEE
Confidence 233445556666666666543 111122 1467777777532 3445555555 459999652 2 57898
Q ss_pred e--eccChhHHHHHHHHHHHhhC
Q 045431 413 S--AFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 413 ~--~~~~~~~l~~~l~~l~~~l~ 433 (433)
. +..+++++++++++|.++++
T Consensus 397 ~PpL~it~~~i~~~~~~l~~al~ 419 (422)
T PRK05630 397 MPPYITTSEQIAQICAALAAAVK 419 (422)
T ss_pred ECCccCCHHHHHHHHHHHHHHHh
Confidence 8 56799999999999998863
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-14 Score=139.05 Aligned_cols=221 Identities=13% Similarity=0.125 Sum_probs=135.4
Q ss_pred CCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHH-hCCccccccccccc
Q 045431 105 QGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVI-MGQTGEFQKDAEKY 182 (433)
Q Consensus 105 ~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~-~g~~~~~~~~~~~~ 182 (433)
.....|++.+|++. +.+ ..++++++++|+.+ +.+++++||+|++....|.+....+.. +...+
T Consensus 69 p~~~~Le~~lA~l~----g~~--~av~~sSG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~~G--------- 133 (436)
T PRK07812 69 PTQDVVEQRIAALE----GGV--AALLLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLG--------- 133 (436)
T ss_pred chHHHHHHHHHHHh----CCC--eEEEEccHHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhhcCe---------
Confidence 34568888888875 543 35666666778875 788899999999999999876654432 12112
Q ss_pred ceEEEeecCccCCcccCCCC--CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCccc
Q 045431 183 GKIEYMRCTAENGFFPDLST--VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIF 260 (433)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~ 260 (433)
.+++.++ +.. + ..++++ .+++++|++.+|+||+|.+.+ +++|.++|+++|+++|+|++++.-.. ..++
T Consensus 134 i~v~~vd-d~~-d-~e~l~~ai~~~tklV~ie~~sNp~G~v~D---l~~I~~la~~~gi~liVD~t~a~~~~---~~pl- 203 (436)
T PRK07812 134 IEVSFVE-DPD-D-LDAWRAAVRPNTKAFFAETISNPQIDVLD---IPGVAEVAHEAGVPLIVDNTIATPYL---IRPL- 203 (436)
T ss_pred EEEEEEC-CCC-C-HHHHHHhCCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccc---CCch-
Confidence 2555553 111 1 111221 367899999999999999998 78888999999999999999873111 1222
Q ss_pred ccCCCCcceEEEecccccccccccceeeeeccccccc-cC----------------------CcchhHHHH-HHHhhccC
Q 045431 261 EIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLF-SD----------------------GFPVAKDFN-RIVCTCFN 316 (433)
Q Consensus 261 ~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~-~~----------------------~~~~~~~~~-~~~~~~~~ 316 (433)
.. +-.+++.|++|.+|..|--+|.+++...... .. .+.+..... ........
T Consensus 204 ~~----GaDivv~S~tK~lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 279 (436)
T PRK07812 204 EH----GADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYALKARVQLLRDLGS 279 (436)
T ss_pred hc----CCCEEEEecccccCCCCCeEEEEEEcCCccccccccccccccCCcccccchhhhcchhHHHHHHHHHHHHhcCC
Confidence 11 1237789999999866655776666432110 00 000000011 11111222
Q ss_pred CCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc
Q 045431 317 GASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 317 ~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 359 (433)
..++... ..++ .+.+.+..+.++..++...+.+.|+++
T Consensus 280 ~l~p~~a---~l~~--rgl~tL~~R~~~~~~nA~~la~~L~~~ 317 (436)
T PRK07812 280 AISPFNA---FLIA--QGLETLSLRIERHVANAQRVAEFLEAR 317 (436)
T ss_pred CCCHHHH---HHHh--cCcCcHHHHHHHHHHHHHHHHHHHHhC
Confidence 2333322 2222 344556777788889999999999987
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.7e-15 Score=141.84 Aligned_cols=348 Identities=11% Similarity=0.048 Sum_probs=194.8
Q ss_pred HHHHHHHhcCCCCceEEecCCCCC--C-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCC
Q 045431 51 RRKAAHMLKYPDAEVISLGIGDTT--E-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEG 127 (433)
Q Consensus 51 ~~~~~~~~~~~~~~~i~l~~g~~~--~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~ 127 (433)
+.++......+++..||+..|... + ..+|.+.+++.+++.+.. ...+ + .+.+..+++.+....+...+
T Consensus 41 ~a~G~~l~D~dG~~yiD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~----~~~~-~----~~~~~~la~~L~~~~~~~~~ 111 (433)
T PRK00615 41 SASGDIFIDSLGKTFIDFCGSWGSLIHGHSHPKICDAIQQGAERGT----SYGL-T----SEQEILFAEELFSYLGLEDH 111 (433)
T ss_pred EeeeCEEEECCCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCC----CCCC-C----CHHHHHHHHHHHHhCCCCcC
Confidence 344444556678889999776532 2 368999999999987531 1122 1 23344455554432233336
Q ss_pred cEEEcCChHHHHHHHHHh---cCCCCEEEEeCCCChhhhhh-H--HHhCCcc---ccccc--ccccceEEEeecCccCCc
Q 045431 128 DIFVSDGAKCDISRLQIV---FGSNVTMAVQDPSYPAYVDS-S--VIMGQTG---EFQKD--AEKYGKIEYMRCTAENGF 196 (433)
Q Consensus 128 ~i~~~~G~~~al~~l~~l---~~~gd~Vl~~~p~~~~~~~~-~--~~~g~~~---~~~~~--~~~~~~~~~~~~~~~~~~ 196 (433)
.+++++++++|......+ .....+|+...-+|++.... + ...+... ..... ...+.....++.++...+
T Consensus 112 ~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 191 (433)
T PRK00615 112 KIRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIF 191 (433)
T ss_pred EEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCCCCHHHH
Confidence 899999999998863222 23346788888888885422 1 1111000 00000 000011122222111111
Q ss_pred ccCCCC-CCCccEEEEcCC-CCccccCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEe
Q 045431 197 FPDLST-VARTDIIFFCSP-NNPTGAAA-TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETS 273 (433)
Q Consensus 197 ~~~~~~-~~~~~~i~l~~p-~nPtG~~~-~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~ 273 (433)
...++. ..++.+ +++.| ..-.|... +++.+++|.++|++||+++|.||++..+ ..+.......+.-.+| + .
T Consensus 192 ~~~l~~~~~~~aa-vI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~-R~G~~ga~~~~gv~PD--i--~ 265 (433)
T PRK00615 192 QTVMNSLGHRVAG-VIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQGGAAAIYHVKPD--I--T 265 (433)
T ss_pred HHHHHhcCCceEE-EEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccHhHHHHhcCCCCC--e--E
Confidence 111111 133444 44566 44456654 5788999999999999999999999766 3332211111222244 2 2
Q ss_pred cccccccccccceeeeeccccccccCCcchhHHHH---HHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHH
Q 045431 274 SFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFN---RIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTD 350 (433)
Q Consensus 274 S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 350 (433)
+|+|.+| .|+.+|+++++++++ +.+. .....++.+.++++.+++.+.|+.... +...++++++.+
T Consensus 266 ~~gK~lg-gG~p~~av~~~~~i~--------~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~---~~~~~~~~~~g~ 333 (433)
T PRK00615 266 VYGKILG-GGLPAAAVVAHKSIM--------DHLAPEGTIFQAGTLSGNPLAMAAGKASINLCRE---QGFYTQLSTLEQ 333 (433)
T ss_pred EEccccc-CCcceeeeeecHHHH--------hhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhc---ccHHHHHHHHHH
Confidence 5899997 789999999998885 3332 112233445678888888887763221 223444455555
Q ss_pred HHHHH----HhhcCCeeecCCCccEEEEECCCCC--------------hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEE
Q 045431 351 IIVET----FNSLGFKVYGGKNAPYVWVQFPGRS--------------SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRV 412 (433)
Q Consensus 351 ~l~~~----l~~~g~~~~~~~~g~~~~~~~~~~~--------------~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi 412 (433)
++.+. +.+.|+.+.....|.++.+.+.... ...+...+++ +||.+.|...- .. =+
T Consensus 334 ~l~~~l~~~~~~~g~~v~~~r~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~~----~~--~l 406 (433)
T PRK00615 334 NFLSPIEEMIRSQGFPVSLVRYGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFS-KGVYLSPSPFE----AS--FL 406 (433)
T ss_pred HHHHHHHHHHHHcCCCeEEEeeceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHH-CCeeecCcccc----cc--ce
Confidence 55444 4444554322224666666664110 1134555554 59999875321 11 25
Q ss_pred eeccChhHHHHHHHHHHHhh
Q 045431 413 SAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 413 ~~~~~~~~l~~~l~~l~~~l 432 (433)
+...++++|++.++++.+++
T Consensus 407 s~~ht~~did~~~~a~~~~~ 426 (433)
T PRK00615 407 SSAHSMENLDYAQNVLIDSL 426 (433)
T ss_pred ecCCCHHHHHHHHHHHHHHH
Confidence 66679999999999999876
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.7e-15 Score=143.38 Aligned_cols=349 Identities=11% Similarity=0.033 Sum_probs=203.7
Q ss_pred HHHHHHhcCCCCceEEecCCCC--C-CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCc
Q 045431 52 RKAAHMLKYPDAEVISLGIGDT--T-EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGD 128 (433)
Q Consensus 52 ~~~~~~~~~~~~~~i~l~~g~~--~-~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~ 128 (433)
..+......+++..||+..|.. . -..+|.+.+++.+++.+... .....+ .. +.+..+|+.|.+..+...+.
T Consensus 45 a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~-~~~~~~-~~----~~~~~lae~L~~~~p~~~~~ 118 (460)
T PRK06916 45 GEGRKLYDVNGNEYYDGVSSIWLNVHGHQVPELDEAIREQLNKIAH-STLLGL-AN----VPSILLAEKLIEVVPEGLKK 118 (460)
T ss_pred ccccEEEeCCCCEEEEcchhHHHhhcCCCCHHHHHHHHHHHHhCCC-cccccc-CC----HHHHHHHHHHHHhCCCCCCE
Confidence 4444455566788999876642 2 24788999999999986421 111112 12 33344455444322333468
Q ss_pred EEEcCChHHHHHHHHHhc--------CC-CCEEEEeCCCChhhhhhHHHhCCc-ccccccccccceEEEeecCc-----c
Q 045431 129 IFVSDGAKCDISRLQIVF--------GS-NVTMAVQDPSYPAYVDSSVIMGQT-GEFQKDAEKYGKIEYMRCTA-----E 193 (433)
Q Consensus 129 i~~~~G~~~al~~l~~l~--------~~-gd~Vl~~~p~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~-----~ 193 (433)
+++++++++|......+. .+ ..+|+..+.+|++.......++.. .....++........+|... .
T Consensus 119 v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~ 198 (460)
T PRK06916 119 VFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPY 198 (460)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCccccccc
Confidence 999999999988632221 13 367888999898855333333211 11111111112233333210 0
Q ss_pred C-Cc-------ccC----CCC-CCCccEEEEcCC--CCccccC-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCC
Q 045431 194 N-GF-------FPD----LST-VARTDIIFFCSP--NNPTGAA-ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPR 257 (433)
Q Consensus 194 ~-~~-------~~~----~~~-~~~~~~i~l~~p--~nPtG~~-~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~ 257 (433)
+ .. ... ++. ..++.+|+ ..| +.-.|+. .+++.++++.++|++||+++|.||++..+...|...
T Consensus 199 ~~~~~~~~~~~~~~l~~~l~~~~~~iAAvi-~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~~ 277 (460)
T PRK06916 199 GNDKAEIVKKHLEELEELLKEKHEEIAAII-VEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMF 277 (460)
T ss_pred CCChHHHHHHHHHHHHHHHHhCCCcEEEEE-EeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchhh
Confidence 0 00 000 111 13455554 455 5666765 588999999999999999999999998775555433
Q ss_pred cccccCCCCcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHH-------HHHhhccCCCcHHHHHHHHHh
Q 045431 258 SIFEIPGAKEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFN-------RIVCTCFNGASNISQAGGLAC 329 (433)
Q Consensus 258 ~~~~~~~~~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~q~~~~~~ 329 (433)
....+.-.+| ++ +++|.++ .| +.+|.+++++++. +.+. .....++.+.++++.+++.+.
T Consensus 278 a~~~~gv~PD-iv---~~gK~l~-gG~~Pi~av~~~~ei~--------~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~ 344 (460)
T PRK06916 278 ACEHENVTPD-IM---TAGKGLT-GGYLPIAITVTTDEIY--------NAFYGDYEEQKTFFHGHSYTGNPLGCAVALAN 344 (460)
T ss_pred HHHhcCCCCC-ee---eeehhhh-cCccccceeeecHHHH--------HHhhccccccCccccCCCCCCCHHHHHHHHHH
Confidence 2222332345 23 6799998 88 5999999998874 3222 122344555788888888888
Q ss_pred cCcCChhHHHHHHHHHHHHHHHHHHHHhhc---C-CeeecCCCccEEEEECCC--C------C----hHHHHHHHHHcCC
Q 045431 330 LSPEGFKAVHEVIGFYKENTDIIVETFNSL---G-FKVYGGKNAPYVWVQFPG--R------S----SWDVFSEILEKTH 393 (433)
Q Consensus 330 l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---g-~~~~~~~~g~~~~~~~~~--~------~----~~~~~~~l~~~~g 393 (433)
|+.... +.+.++.+++-+++.+.|+++ . +.-+.. .|.++-+.+.. . . ...+...++ ++|
T Consensus 345 l~~l~~---~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG-~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~-~~G 419 (460)
T PRK06916 345 LELYEK---TNLIEQVARKTEYVATQLEDLFALKHVGDIRQ-LGLMVGIELVKNKETKEPFEWTERVGVQVCKRSR-ELG 419 (460)
T ss_pred HHHHHh---ccHHHHHHHHHHHHHHHHHHhhcCCCeEEeec-CCceeeEEeecccccccCCCchhhHHHHHHHHHH-HCC
Confidence 763221 234556666666777766654 1 111222 34555555531 0 0 123445544 459
Q ss_pred eEecCCCCCCCCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 394 VVTTPGSGFGPGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 394 i~v~~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
|.+.|. + +.+|+. +..+++++++++++|.+++
T Consensus 420 vl~~~~------g-~~l~~~Ppl~it~~~id~~~~~l~~~l 453 (460)
T PRK06916 420 MLTRPL------G-NTIVFMPPLASTIDELDEMLRILYKAI 453 (460)
T ss_pred eEEEec------C-CEEEEeCCcccCHHHHHHHHHHHHHHH
Confidence 999763 1 468887 5679999999999999876
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4e-14 Score=138.39 Aligned_cols=350 Identities=11% Similarity=0.078 Sum_probs=202.8
Q ss_pred HHHHHHhcCCCCceEEecCCCC--CC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCC-CCCC
Q 045431 52 RKAAHMLKYPDAEVISLGIGDT--TE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLG-IEEG 127 (433)
Q Consensus 52 ~~~~~~~~~~~~~~i~l~~g~~--~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~-~~~~ 127 (433)
..+......+++..||+..|.- .+ ..+|.+.+++.+++.+.........+ ..+.+..+|+.|.+..+ -..+
T Consensus 31 a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~-----~~~~~~~lae~L~~~~~~~~~~ 105 (449)
T PRK07481 31 GDGVYVYDIDGKKLLDGVGGLWNVNVGHNREEVKEAIVRQLDELEYYSTFDGT-----THPRAIELSYELIDMFAPEGMR 105 (449)
T ss_pred ccccEEEeCCCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhccceeccccc-----CCHHHHHHHHHHHHhcCCCCCC
Confidence 4444455567788999976632 22 36788999999998763210011112 22444556666544222 1246
Q ss_pred cEEEcCChHHHHHHHHHh----c----CCC-CEEEEeCCCChhhhhhHHHhCCcccc-cccccccceEEEeecCccC--C
Q 045431 128 DIFVSDGAKCDISRLQIV----F----GSN-VTMAVQDPSYPAYVDSSVIMGQTGEF-QKDAEKYGKIEYMRCTAEN--G 195 (433)
Q Consensus 128 ~i~~~~G~~~al~~l~~l----~----~~g-d~Vl~~~p~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~--~ 195 (433)
.+++++++++|+.....+ . ++| .+|+..+.+|++.......++....+ ..++.....+..++..... .
T Consensus 106 ~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 185 (449)
T PRK07481 106 RVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNP 185 (449)
T ss_pred EEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcccccc
Confidence 899999999998853222 1 123 57888888898855333232211111 0011111122222211000 0
Q ss_pred cc-cC-----------CC-----C-CCCccEEEEcCC-CCcccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC
Q 045431 196 FF-PD-----------LS-----T-VARTDIIFFCSP-NNPTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN 255 (433)
Q Consensus 196 ~~-~~-----------~~-----~-~~~~~~i~l~~p-~nPtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~ 255 (433)
+. .+ ++ . ..++.+|+ ..| +.-.|. ..+.+.++++.++|++||+++|.||++..|...+.
T Consensus 186 ~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAvi-iEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~ 264 (449)
T PRK07481 186 FTEQDPEELARICARLLEREIAFQGPDTIAAFI-AEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGS 264 (449)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEE-EecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCch
Confidence 00 00 01 1 13455555 456 555566 45788899999999999999999999998765554
Q ss_pred CCcccccCCCCcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHH-------HHhhccCCCcHHHHHHHH
Q 045431 256 PRSIFEIPGAKEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNR-------IVCTCFNGASNISQAGGL 327 (433)
Q Consensus 256 ~~~~~~~~~~~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~q~~~~ 327 (433)
......++-.+| ++ +++|.++ .| +.+|.+++++++. +.+.. ....++.+.++++.+++.
T Consensus 265 ~~a~~~~gv~PD-iv---~~gKgl~-gG~~Pi~av~~~~~i~--------~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~ 331 (449)
T PRK07481 265 WFGSRGWGVKPD-IM---CLAKGIT-SGYVPLGATMVNARIA--------DAFEANADFGGAIMHGYTYSGHPVACAAAL 331 (449)
T ss_pred hhHhhhcCCCCC-EE---EEeeccc-CCCcCceEEEEcHHHH--------HHHhccCccccccccCCCCCCCHHHHHHHH
Confidence 322222322344 23 5799997 78 5999999998874 33321 134455667889888888
Q ss_pred HhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc----CC-eeecCCCccEEEEECCCC-------C-----hHHHHHHHHH
Q 045431 328 ACLSPEGFKAVHEVIGFYKENTDIIVETFNSL----GF-KVYGGKNAPYVWVQFPGR-------S-----SWDVFSEILE 390 (433)
Q Consensus 328 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g~-~~~~~~~g~~~~~~~~~~-------~-----~~~~~~~l~~ 390 (433)
+.|+.... ++..++.++.-+.+.+.|+++ ++ .-+. ..|.++.+.+... + ...+...++
T Consensus 332 a~L~~l~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vr-G~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~- 406 (449)
T PRK07481 332 ATLDIVVR---EDLPANAAKRGAYLLEGLQPLKERFELVGDVR-GKGLMLALDLVADKATREPIDPSKGYANAVADVAR- 406 (449)
T ss_pred HHHHHHHh---hhHHHHHHHHHHHHHHHHHHHhhcCCCeEEEe-ecceEEEEEecccccccCCCCchhHHHHHHHHHHH-
Confidence 88763221 344555666666666666654 22 1122 2456666666311 1 123444444
Q ss_pred cCCeEecCCCCCCCCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 391 KTHVVTTPGSGFGPGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 391 ~~gi~v~~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
++||.+.+.. +.+||+ +..+++++++++++|.+++
T Consensus 407 ~~Gvl~~~~g-------~~i~l~Ppl~it~~eid~~~~~l~~~l 443 (449)
T PRK07481 407 ENGVLVRPSG-------TKIILSPPLVIQREDVDRIVDALDAGL 443 (449)
T ss_pred hCCeEEEecC-------CEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4599997631 358888 5679999999999999876
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-14 Score=142.34 Aligned_cols=350 Identities=11% Similarity=0.042 Sum_probs=205.8
Q ss_pred HHHHHHHhcCCCCceEEecCCCC--C-CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCC
Q 045431 51 RRKAAHMLKYPDAEVISLGIGDT--T-EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEG 127 (433)
Q Consensus 51 ~~~~~~~~~~~~~~~i~l~~g~~--~-~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~ 127 (433)
+.++......+++..||+..|.. . -..+|.+.+++.+++.+... .....| ..+.+..+|+.+....+...+
T Consensus 35 ~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~-~~~~~~-----~~~~~~~lae~L~~~~p~~~~ 108 (466)
T PRK07030 35 RGEGVWLEDFEGKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQLEH-VILAGF-----SHEPVIELSERLVKITPPGLS 108 (466)
T ss_pred eeeccEEEECCCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHHhcCC-cccccc-----CCHHHHHHHHHHHHhCCCCcC
Confidence 34444455567788999976642 2 23678899999999876421 111122 124445555555432233346
Q ss_pred cEEEcCChHHHHHHHHHhc---------CCCCEEEEeCCCChhhhhhHHHhCCccc-ccccccccceEEEeecCccC---
Q 045431 128 DIFVSDGAKCDISRLQIVF---------GSNVTMAVQDPSYPAYVDSSVIMGQTGE-FQKDAEKYGKIEYMRCTAEN--- 194 (433)
Q Consensus 128 ~i~~~~G~~~al~~l~~l~---------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~--- 194 (433)
.+++++++++|......+. ....+|+....+|++.......++.... ...++.....+..+|.....
T Consensus 109 ~v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~ 188 (466)
T PRK07030 109 RCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRP 188 (466)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCccccc
Confidence 8999999999988632221 1235788888888886544333322111 11111111123333321100
Q ss_pred -Cc---------ccCCC----C-CCCccEEEEcCC--CCcccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCC
Q 045431 195 -GF---------FPDLS----T-VARTDIIFFCSP--NNPTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNP 256 (433)
Q Consensus 195 -~~---------~~~~~----~-~~~~~~i~l~~p--~nPtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~ 256 (433)
+. ...++ . ..++.+|+ ..| +.-.|. ..+++.++++.++|++||+++|.||++..|...+..
T Consensus 189 ~~~~~~~~~~~~l~~le~~~~~~~~~iAAvi-~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~ 267 (466)
T PRK07030 189 EGMSWEEHSRRMFAHMEQTLAEHHDEIAAVI-VEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTM 267 (466)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhCCCceEEEE-EecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccc
Confidence 00 00011 1 13455544 456 555566 457789999999999999999999999988655543
Q ss_pred CcccccCCCCcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHH-------HHHhhccCCCcHHHHHHHHH
Q 045431 257 RSIFEIPGAKEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFN-------RIVCTCFNGASNISQAGGLA 328 (433)
Q Consensus 257 ~~~~~~~~~~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~q~~~~~ 328 (433)
.....++-.+| ++ +++|.++ .| +.+|.+++++++. +.+. .....++.+.++++.+++.+
T Consensus 268 ~a~~~~gv~PD-iv---~~gKgl~-gG~~Pi~av~~~~ei~--------~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a 334 (466)
T PRK07030 268 FACEQAGIRPD-FL---CLSKALT-GGYLPLAAVLTTDTVY--------QAFYDDYPTLRAFLHSHSYTGNPLACAAALA 334 (466)
T ss_pred hHHHhcCCCCC-EE---eeehhcc-CCcccceEEEecHHHH--------HHHhcccccccccccCCCCCCCHHHHHHHHH
Confidence 32223332344 33 5799998 89 5999999998874 3332 12344566678999988888
Q ss_pred hcCcCChhHHHHHHHHHHHHHHHHHHHHhhc---C-CeeecCCCccEEEEECCCC---------C---hHHHHHHHHHcC
Q 045431 329 CLSPEGFKAVHEVIGFYKENTDIIVETFNSL---G-FKVYGGKNAPYVWVQFPGR---------S---SWDVFSEILEKT 392 (433)
Q Consensus 329 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---g-~~~~~~~~g~~~~~~~~~~---------~---~~~~~~~l~~~~ 392 (433)
.|+.... +++.++.++.-+++.+.|+++ . +.-+.. .|+++-+.+... . ...+...+++ +
T Consensus 335 ~L~~i~~---~~l~~~~~~~G~~l~~~L~~l~~~~~v~~vrG-~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 409 (466)
T PRK07030 335 TLDIFEQ---DNVIENNRALARRMAEATAHLADHPHVAEVRQ-TGMILAIEMVQDKASKTPYPWQERRGLKVYQHALE-R 409 (466)
T ss_pred HHHHHHh---cCHHHHHHHHHHHHHHHHHHHhcCCCEEEeEe-ceeEEEEEeccCccccccCcchhHHHHHHHHHHHH-C
Confidence 8763222 334455556666666666553 2 221222 456666666310 0 1234455554 5
Q ss_pred CeEecCCCCCCCCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 393 HVVTTPGSGFGPGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 393 gi~v~~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
||.+.+. + +.+|+. +..+++++++++++|.+++
T Consensus 410 Gvl~~~~------g-~~i~~~Ppl~it~~eid~~~~~l~~al 444 (466)
T PRK07030 410 GALLRPL------G-SVVYFLPPYVITPEQIDFLAEVASEGI 444 (466)
T ss_pred CeEEEec------C-CEEEEECCccCCHHHHHHHHHHHHHHH
Confidence 9999752 1 468887 5679999999999999876
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-14 Score=141.74 Aligned_cols=346 Identities=10% Similarity=0.002 Sum_probs=197.6
Q ss_pred HhcCCCCceEEecCCC---CCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcC
Q 045431 57 MLKYPDAEVISLGIGD---TTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSD 133 (433)
Q Consensus 57 ~~~~~~~~~i~l~~g~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~ 133 (433)
....+++..+|+..|. +--..++.+.+++.+++.+... ....+.......++-+.+++. .+..-+.+++++
T Consensus 39 l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~--~~~~~~~~~~~~~la~~l~~~----~~~~~~~v~f~~ 112 (427)
T TIGR00508 39 LTLDDGRRLIDGMSSWWAAIHGYNHPRLNAAAQKQIDKMSH--VMFGGFTHKPAIELCQKLVKM----TPNALDCVFLAD 112 (427)
T ss_pred EEeCCCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCC--ccccccCCHHHHHHHHHHHhh----CCCCCCEEEEeC
Confidence 3344577899997765 2224678999999999876431 111111122233444444443 233347899999
Q ss_pred ChHHHHHH-HHH-h--c----CC-CCEEEEeCCCChhhhhhHHHh-CCccccc-ccccccceEEEeecCcc--C-Cc---
Q 045431 134 GAKCDISR-LQI-V--F----GS-NVTMAVQDPSYPAYVDSSVIM-GQTGEFQ-KDAEKYGKIEYMRCTAE--N-GF--- 196 (433)
Q Consensus 134 G~~~al~~-l~~-l--~----~~-gd~Vl~~~p~~~~~~~~~~~~-g~~~~~~-~~~~~~~~~~~~~~~~~--~-~~--- 196 (433)
+++++... +.. . . .+ ..+|+..+-+|.+.......+ +....+. .+.........++.... . .+
T Consensus 113 sGseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 192 (427)
T TIGR00508 113 SGSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQNRFDEEWNEE 192 (427)
T ss_pred CcHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCCCccccchhHHH
Confidence 99998875 421 1 1 12 367888888888765333322 2111000 00000011112211000 0 00
Q ss_pred -ccCCC----C-CCCccEEEEcCC--CCcccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCc
Q 045431 197 -FPDLS----T-VARTDIIFFCSP--NNPTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKE 267 (433)
Q Consensus 197 -~~~~~----~-~~~~~~i~l~~p--~nPtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 267 (433)
..+++ . ..++.+ +++.| ++-.|. ..+.+.+++|.++|++||+++|+||++.++...+.......++-.+|
T Consensus 193 ~~~~l~~~l~~~~~~vaa-vivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~v~pD 271 (427)
T TIGR00508 193 AITPLAKLMELHSDEIAA-VILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACEHAGVVPD 271 (427)
T ss_pred HHHHHHHHHHhcCCcEEE-EEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhhhcCCCCC
Confidence 01111 1 123444 55566 554555 44789999999999999999999999977655443322222222234
Q ss_pred ceEEEeccccccccccc-ceeeeeccccccccCCcchhHHHHHH-----HhhccCCCcHHHHHHHHHhcCcCChhHHHHH
Q 045431 268 VAIETSSFSKYAGFTGV-RLGWTVIPKELLFSDGFPVAKDFNRI-----VCTCFNGASNISQAGGLACLSPEGFKAVHEV 341 (433)
Q Consensus 268 ~vi~i~S~sK~~~~~G~-r~G~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~ 341 (433)
++ +++|.++ .|+ .++.+++++++. +.+... ....+...++++.+++.+.|+.... +++
T Consensus 272 -i~---~~gK~l~-gG~~p~~a~~~~~~~~--------~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~---~~~ 335 (427)
T TIGR00508 272 -IL---CVGKALT-GGYMTLSATVTTDKVA--------QTISSGEAGCFMHGPTFMGNPLACAVAEASLAILLE---GEW 335 (427)
T ss_pred -EE---Eechhhh-cCcccceEEEEcHHHH--------HHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHh---CCH
Confidence 23 4799996 885 788888887764 333321 1233445678888888887762211 234
Q ss_pred HHHHHHHHHHHHHHHhhcCCe-eecC--CCccEEEEECCC-CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--c
Q 045431 342 IGFYKENTDIIVETFNSLGFK-VYGG--KNAPYVWVQFPG-RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--F 415 (433)
Q Consensus 342 ~~~~~~~~~~l~~~l~~~g~~-~~~~--~~g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~ 415 (433)
.++++++.+++.+.|++++.. .... ..|.++.+.+.. .....+...+++ +||.+.+.. ..+|++. .
T Consensus 336 ~~~~~~~~~~l~~~L~~l~~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~l~~-~Gv~~~~~~-------~~l~~~ppl~ 407 (427)
T TIGR00508 336 QKQVSAIENQLKRELSPLRKNPVVKDVRVLGAIGVVEMYKPVNVEELQKKFVE-QGVWIRPFG-------KLIYVMPPYI 407 (427)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCEEeEeccccEEEEEECCccCHHHHHHHHHH-CCeEEEecC-------CEEEEECCCC
Confidence 567777777788877765321 1111 135666666652 234556666555 499996531 3689984 5
Q ss_pred cChhHHHHHHHHHHHhhC
Q 045431 416 GHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 416 ~~~~~l~~~l~~l~~~l~ 433 (433)
.+++++++++++|.+++.
T Consensus 408 ~t~~~id~~~~~l~~~l~ 425 (427)
T TIGR00508 408 ITTEQLQKLTAALIEALH 425 (427)
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 799999999999998863
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.1e-14 Score=137.98 Aligned_cols=352 Identities=10% Similarity=0.059 Sum_probs=201.9
Q ss_pred HHhcCCCCceEEecCCCC--CC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEc
Q 045431 56 HMLKYPDAEVISLGIGDT--TE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVS 132 (433)
Q Consensus 56 ~~~~~~~~~~i~l~~g~~--~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~ 132 (433)
.....+++..||+..|.. .+ ..+|.+.+++.+++.+... .....+ ..+....+++.|....+-..+.++++
T Consensus 23 ~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~av~~ql~~~~~-~~~~~~-----~~~~~~~lae~L~~~~p~~~~~v~f~ 96 (443)
T PRK07483 23 YLIDATGKRYLDASGGAAVSCLGHSHPRVIAAIHAQIDRLAY-AHTSFF-----TTEPAEALADRLVAAAPAGLEHVYFV 96 (443)
T ss_pred EEEeCCCCEEEEcCccHhhhccCCCCHHHHHHHHHHHHhccC-cccccc-----CCHHHHHHHHHHHHhCCCCCCEEEEc
Confidence 344556778999977643 22 3678899999999875421 011112 12334455555543223234689999
Q ss_pred CChHHHHHH-HH--Hhc-----CCC-CEEEEeCCCChhhhhhHHHhCCcccc-cccccccceEEEeecCc-cCCcc----
Q 045431 133 DGAKCDISR-LQ--IVF-----GSN-VTMAVQDPSYPAYVDSSVIMGQTGEF-QKDAEKYGKIEYMRCTA-ENGFF---- 197 (433)
Q Consensus 133 ~G~~~al~~-l~--~l~-----~~g-d~Vl~~~p~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~-~~~~~---- 197 (433)
++++++... +. ... ++| .+|+..+.+|++.......+.....+ ..++.....+..++... .....
T Consensus 97 ~sGsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 176 (443)
T PRK07483 97 SGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAGES 176 (443)
T ss_pred CCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCccccccccCCC
Confidence 999999885 31 112 133 56888888888865333333211111 11111111222332210 00000
Q ss_pred ---------cCCC----C--CCCccEEEEcCC-CC-ccc-cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcc
Q 045431 198 ---------PDLS----T--VARTDIIFFCSP-NN-PTG-AAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSI 259 (433)
Q Consensus 198 ---------~~~~----~--~~~~~~i~l~~p-~n-PtG-~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~ 259 (433)
.+++ . .+++.+|+ ..| +. -.| ...+++.++++.++|++||+++|.||++..+...+.....
T Consensus 177 ~~~~~~~~~~~l~~~~~~~~~~~iAAvi-vEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~ 255 (443)
T PRK07483 177 DEAYGQRLADELEAKILELGPDTVAAFV-AETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFAC 255 (443)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCceEEEE-EeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHHHH
Confidence 0111 1 13445544 456 32 235 4567889999999999999999999999988655543322
Q ss_pred cccCCCCcceEEEeccccccccccc-ceeeeeccccccccCCcchhHHHHH----HHhhccCCCcHHHHHHHHHhcCcCC
Q 045431 260 FEIPGAKEVAIETSSFSKYAGFTGV-RLGWTVIPKELLFSDGFPVAKDFNR----IVCTCFNGASNISQAGGLACLSPEG 334 (433)
Q Consensus 260 ~~~~~~~~~vi~i~S~sK~~~~~G~-r~G~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~q~~~~~~l~~~~ 334 (433)
..+.-.+| ++ +++|.++ .|+ .+|.+++++++. +.+.. +...++.+.++++.+++.+.++...
T Consensus 256 ~~~gv~PD-iv---~~gK~l~-gG~~Pi~av~~~~~i~--------~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~ 322 (443)
T PRK07483 256 EEDGVAPD-LV---TIAKGLG-AGYQPIGAVLASDRIY--------DAIADGSGFFQHGHTYLGHATACAAALAVQRVIA 322 (443)
T ss_pred hhcCCCCC-ee---eehhhhc-cCccccEEEEEcHHHH--------HHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHH
Confidence 22332344 33 5799997 896 999999998874 33321 1234566678899888888876322
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh----cCC-eeecCCCccEEEEECCCC-------C-----hHHHHHHHHHcCCeEec
Q 045431 335 FKAVHEVIGFYKENTDIIVETFNS----LGF-KVYGGKNAPYVWVQFPGR-------S-----SWDVFSEILEKTHVVTT 397 (433)
Q Consensus 335 ~~~~~~~~~~~~~~~~~l~~~l~~----~g~-~~~~~~~g~~~~~~~~~~-------~-----~~~~~~~l~~~~gi~v~ 397 (433)
. +++.++.++..+++.+.|++ ++. .-+.. .|+++-+.+... + ...+...+++ +||.+.
T Consensus 323 ~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vRG-~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gll~~ 397 (443)
T PRK07483 323 E---DGLLANVRARGEQLRARLRERLGQHPHVGDIRG-RGLFVGVELVADRATKAPFDPALKLHARIKREAMA-RGLMVY 397 (443)
T ss_pred h---cCHHHHHHHHHHHHHHHHHHHHhcCCCeeeEee-cccEEEEEEeecccccCCCCchhhHHHHHHHHHHH-CCcEEE
Confidence 1 33445555566666666654 221 11222 455555555310 0 1234555554 599997
Q ss_pred CCCC-CCCCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 398 PGSG-FGPGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 398 ~g~~-f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
+... ......+.+||. +..+++++++++++|.+++
T Consensus 398 ~~~~~~~~~~~~~l~~~PpL~it~~eid~~~~~l~~~l 435 (443)
T PRK07483 398 PMGGTIDGVRGDHVLLAPPFIITAAQIDEIVERLGDAI 435 (443)
T ss_pred ecCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 6421 001113679998 6779999999999999876
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.9e-14 Score=138.25 Aligned_cols=357 Identities=11% Similarity=0.028 Sum_probs=204.1
Q ss_pred HHHHHHHhcCCCCceEEecCCCC--CC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCC
Q 045431 51 RRKAAHMLKYPDAEVISLGIGDT--TE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEG 127 (433)
Q Consensus 51 ~~~~~~~~~~~~~~~i~l~~g~~--~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~ 127 (433)
+.++......+++..||+..|.. .+ ..+|.+.+++.+++.+... .....|. .+.+..+|+.|....+...+
T Consensus 19 ~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~Ai~~ql~~~~~-~~~~~~~-----~~~~~~lae~L~~~~p~~~~ 92 (447)
T PRK06917 19 HGKGVYLYDQNGNKYFDGSSGAVTAGIGHGVKEIADAIKEQAEEVSF-VYRSQFT-----SEPAEKLAKKLSDLSPGDLN 92 (447)
T ss_pred eeeeeEEEeCCCCEEEECchhHHhccCCCCCHHHHHHHHHHHhhCcC-ccccccC-----CHHHHHHHHHHHHhCCCCCC
Confidence 34444455566778999976642 22 3689999999999986321 1111221 24444555555442233346
Q ss_pred cEEEcCChHHHHHHHHHhc---------CCCCEEEEeCCCChhhhhhHHHhCCcccc-cccccccceEEEeecCccC--C
Q 045431 128 DIFVSDGAKCDISRLQIVF---------GSNVTMAVQDPSYPAYVDSSVIMGQTGEF-QKDAEKYGKIEYMRCTAEN--G 195 (433)
Q Consensus 128 ~i~~~~G~~~al~~l~~l~---------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~--~ 195 (433)
.+++++++++|......+. ....+|+..+.+|++.............+ ..++.....+..++..... .
T Consensus 93 ~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 172 (447)
T PRK06917 93 WSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCP 172 (447)
T ss_pred EEEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcccccc
Confidence 8999999999988632222 12367888898898865443333211110 0011100111112210000 0
Q ss_pred cc-----------cCCC----CC--CCccEEEEcCC-CC-cccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC
Q 045431 196 FF-----------PDLS----TV--ARTDIIFFCSP-NN-PTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN 255 (433)
Q Consensus 196 ~~-----------~~~~----~~--~~~~~i~l~~p-~n-PtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~ 255 (433)
+. ..++ .. .++.+|++ .| +. --|+ ..+++.+++|.++|++||+++|.||++..|...+.
T Consensus 173 ~~~~~~~~~~~~~~~le~~i~~~~~~~iAAvi~-EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~ 251 (447)
T PRK06917 173 VQKVYPTCQLACATELETAIERIGAEHIAAFIA-EPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGA 251 (447)
T ss_pred cCCChHHHHHHHHHHHHHHHHhcCCCceEEEEE-eccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccc
Confidence 00 0011 11 24555554 56 33 3344 55789999999999999999999999987755444
Q ss_pred CCcccccCCCCcceEEEeccccccccccc-ceeeeeccccccccCCcchhHHHHH----HHhhccCCCcHHHHHHHHHhc
Q 045431 256 PRSIFEIPGAKEVAIETSSFSKYAGFTGV-RLGWTVIPKELLFSDGFPVAKDFNR----IVCTCFNGASNISQAGGLACL 330 (433)
Q Consensus 256 ~~~~~~~~~~~~~vi~i~S~sK~~~~~G~-r~G~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~q~~~~~~l 330 (433)
......++-.+| +-+++|.++ .|+ .+|.+++++++. +.+.. +...++.+.++++.+++.+.|
T Consensus 252 ~~a~~~~gv~PD----i~~~gK~l~-~G~~Pi~a~~~~~~i~--------~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l 318 (447)
T PRK06917 252 MFAMEHWGVEPD----IMTLGKGLG-AGYTPIAATVVSDRVM--------EPILRGSRSIMSGHTLSANPLSAATALAVL 318 (447)
T ss_pred hhhHHhcCCCCC----EEEeeehhc-cCCcceEEEEEcHHHH--------HHHhccCcccccccCCCCCHHHHHHHHHHH
Confidence 322222332344 236899998 885 999999988874 33321 123345567888888888887
Q ss_pred CcCChhHHHHHHHHHHHHHHHHHHHHhhc----CCe-eecCCCccEEEEECCC-------C-C----hHHHHHHHHHcCC
Q 045431 331 SPEGFKAVHEVIGFYKENTDIIVETFNSL----GFK-VYGGKNAPYVWVQFPG-------R-S----SWDVFSEILEKTH 393 (433)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g~~-~~~~~~g~~~~~~~~~-------~-~----~~~~~~~l~~~~g 393 (433)
+.... +++.++++++-+.+.+.|+++ ++. -+. ..|.++.+.+.. . . ...+...++ ++|
T Consensus 319 ~~l~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vr-G~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G 393 (447)
T PRK06917 319 EYMEK---HNLPEKAAEKGEYLIKGLQKVQQQSTIIGDVR-GKGLLIGVEFVADKKTKQPFSKSQAVASELISVAA-KNG 393 (447)
T ss_pred HHHHH---CCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEe-ecceEEEEEEeccCCcCCCCcchhHHHHHHHHHHH-hCC
Confidence 63221 234455666666666666553 321 122 245555565521 0 1 223444554 459
Q ss_pred eEecCCCC-CCCCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 394 VVTTPGSG-FGPGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 394 i~v~~g~~-f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
|.+.+... ......+.+|++ +..+++++++++++|.+++
T Consensus 394 vl~~~~~~~~~g~~~~~i~l~Ppl~it~~eid~~~~~l~~~l 435 (447)
T PRK06917 394 LLLYPAVAGQDGKEGDAVIIAPPMTITYSELDELLSIFAKSV 435 (447)
T ss_pred cEEEecccccCCCCCCEEEEECCCcCCHHHHHHHHHHHHHHH
Confidence 99987421 111124679998 5689999999999998876
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.2e-14 Score=141.40 Aligned_cols=346 Identities=11% Similarity=0.057 Sum_probs=199.0
Q ss_pred HHhcCCCCceEEecCCCC--C-CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccC-CCCCCcEEE
Q 045431 56 HMLKYPDAEVISLGIGDT--T-EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDL-GIEEGDIFV 131 (433)
Q Consensus 56 ~~~~~~~~~~i~l~~g~~--~-~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~-~~~~~~i~~ 131 (433)
.....+++..||+..|.- . -..+|.+.+++.+++.+... ...+ ..+..+....+++.|...+ +.+.+.+++
T Consensus 82 ~l~D~dG~~ylD~~sg~~~~~lGh~hp~v~~Av~~ql~~~~~---~~~~--~~~~~~~~~~lae~L~~~~~~~~~~~v~f 156 (504)
T PLN02760 82 YVYDINGKKYLDALAGLWCTALGGSEPRLVAAATEQLNKLPF---YHSF--WNRTTKPSLDLAKELLEMFTARKMGKVFF 156 (504)
T ss_pred EEEECCCCEEEEcCcCHHhcccCCCCHHHHHHHHHHHhhccc---eecc--cccCcHHHHHHHHHHHhhcCCCCCCEEEE
Confidence 334456778999987642 2 24689999999999976421 1111 1123455555666654321 223457899
Q ss_pred cCChHHHHHHHHHhc--------CCC-CEEEEeCCCChhhhh-hHHHhCCcccccccccccceEEEeecCc-------c-
Q 045431 132 SDGAKCDISRLQIVF--------GSN-VTMAVQDPSYPAYVD-SSVIMGQTGEFQKDAEKYGKIEYMRCTA-------E- 193 (433)
Q Consensus 132 ~~G~~~al~~l~~l~--------~~g-d~Vl~~~p~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~-------~- 193 (433)
++++++|......+. .++ .+|+..+-+|++... .....|.......++.....+..++... .
T Consensus 157 ~~SGsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 236 (504)
T PLN02760 157 TNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGE 236 (504)
T ss_pred eCChHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCcccccCCCCC
Confidence 999999988632222 122 578888888877532 2222222110001111111121222110 0
Q ss_pred --CCc----ccCCC-----CC-CCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcc
Q 045431 194 --NGF----FPDLS-----TV-ARTDIIFFCSP-NNPTGAA-ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSI 259 (433)
Q Consensus 194 --~~~----~~~~~-----~~-~~~~~i~l~~p-~nPtG~~-~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~ 259 (433)
..+ ..+++ .. .++.+ ++..| +.-.|.+ .+++.+++|.++|++||+++|.||++..|...|.....
T Consensus 237 ~~~~~~~~~~~~le~~l~~~~~~~iAA-vI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~ 315 (504)
T PLN02760 237 TEEEFSTRLADNLENLILKEGPETIAA-FIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGC 315 (504)
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCceEE-EEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHH
Confidence 000 00111 11 23444 45566 5555654 47889999999999999999999999877555543322
Q ss_pred cccCCCCcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHH-------HHhhccCCCcHHHHHHHHHhcC
Q 045431 260 FEIPGAKEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNR-------IVCTCFNGASNISQAGGLACLS 331 (433)
Q Consensus 260 ~~~~~~~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~q~~~~~~l~ 331 (433)
..+.-.+| +.+|+|.+| .| +.+|.+++++++. +.+.. +....+.+.++++.+++.+.|+
T Consensus 316 e~~gv~PD----ivtlgK~lg-gG~~PigAv~~~~~i~--------d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le 382 (504)
T PLN02760 316 DKYNIKPD----LVSLAKALS-SAYMPIGAVLVSPEIS--------DVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALK 382 (504)
T ss_pred HhcCCCCc----EEEeccccc-CCccccceEeecHHHH--------hhhhcccccccCcccCCCCCCCHHHHHHHHHHHH
Confidence 22222244 457899997 67 5899999998874 33321 1234456678899988888886
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHhhc---CCe-eecCCCccEEEEECCC-CC-----------hHHHHHHHHHcCCeE
Q 045431 332 PEGFKAVHEVIGFYKENTDIIVETFNSL---GFK-VYGGKNAPYVWVQFPG-RS-----------SWDVFSEILEKTHVV 395 (433)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~---g~~-~~~~~~g~~~~~~~~~-~~-----------~~~~~~~l~~~~gi~ 395 (433)
.... +++.++.+++.+++.+.|+++ ++. -+. ..|.++-+.+.. .. ...+...++ ++||.
T Consensus 383 ~i~~---~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vr-G~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~-~~Gvl 457 (504)
T PLN02760 383 IYKE---RNIPEHVNKIAPRFQDGIKAFSGSPIIGEIR-GTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECK-KRGML 457 (504)
T ss_pred HHHh---CCHHHHHHHHHHHHHHHHHHHhcCCCeeeEE-eCceEEEEEEecCCcccccccchhHHHHHHHHHHH-hCCcE
Confidence 3221 234555666666666666553 221 122 245666666631 10 123444444 55999
Q ss_pred ecCCCCCCCCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 396 TTPGSGFGPGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 396 v~~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
+.+. .+.+||+ +..+++++++++++|.+++
T Consensus 458 ~~~~-------g~~lrl~Ppl~it~eeid~~~~~l~~al 489 (504)
T PLN02760 458 VRVA-------GDNIMMSPPLIITPEEVDELISIYGKAL 489 (504)
T ss_pred EEec-------CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 9763 1468999 5679999999999998876
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.4e-15 Score=148.97 Aligned_cols=182 Identities=10% Similarity=0.070 Sum_probs=117.1
Q ss_pred CCCCCCCCCHH-HHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCccccc
Q 045431 99 SGYGAEQGEKP-LRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQ 176 (433)
Q Consensus 99 ~~Y~~~~g~~~-lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~ 176 (433)
.+...+.|... ..+..|+.+ |.+ ...++++|++.++.+ +.+++++||+|+++..||.++.+.+.+.|..++|.
T Consensus 198 D~L~~p~G~I~eAq~~aA~~f----gA~-~t~FlvNGST~gn~a~i~a~~~~gd~Vlv~RN~HKSv~~al~L~ga~Pvyl 272 (755)
T PRK15029 198 GSLLDHTGAFGESEKYAARVF----GAD-RSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLILTGAKPVYM 272 (755)
T ss_pred CCCCCCCcHHHHHHHHHHHHh----CCC-cEEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeEEEe
Confidence 34334455544 444444444 654 578899999999886 78899999999999999999999999999765543
Q ss_pred ccccccceEEEeecCcc-CCccc-----CCCCCC--------CccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEE
Q 045431 177 KDAEKYGKIEYMRCTAE-NGFFP-----DLSTVA--------RTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIV 242 (433)
Q Consensus 177 ~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~--------~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li 242 (433)
..... -..+..... ..+.+ .+...+ ++++++|++|++ .|++++ +++|+++|++++++|+
T Consensus 273 ~P~~~---~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY-~Gv~~d---i~~I~~~~h~~~~~ll 345 (755)
T PRK15029 273 VPSRN---RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY-DGVCYN---AKEAQDLLEKTSDRLH 345 (755)
T ss_pred ccccc---ccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCC-cceeeC---HHHHHHHHHhcCCeEE
Confidence 22210 000000000 00000 111123 344899999966 899988 7899999999999999
Q ss_pred Eeccccc-cccCCCCCccccc-----CCCCcceEEEeccccccccccccee-eeecccc
Q 045431 243 YDSAYAL-YISDDNPRSIFEI-----PGAKEVAIETSSFSKYAGFTGVRLG-WTVIPKE 294 (433)
Q Consensus 243 ~De~~~~-~~~~~~~~~~~~~-----~~~~~~vi~i~S~sK~~~~~G~r~G-~l~~~~~ 294 (433)
+||+|+. +.|.+..+....+ ......++++-|.+|++ +++..| ++.....
T Consensus 346 vDEAhGah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL--~alTQaS~LHv~~~ 402 (755)
T PRK15029 346 FDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLL--NALSQASYIHVREG 402 (755)
T ss_pred EECccccccccCccccccccccccccccCCCceEEEEchhhcc--cchhhhhhheeCCC
Confidence 9999976 5555432211222 10112248899999998 566655 6666444
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.2e-14 Score=134.68 Aligned_cols=291 Identities=12% Similarity=0.090 Sum_probs=184.8
Q ss_pred CCHHHHHHHHHHHhccCCCCCCcE--EEcCChHHHHHH-HHHh--cCCCCEEEEeCCCChhhhhhHHHhCCccccccccc
Q 045431 106 GEKPLRAAIASTFYKDLGIEEGDI--FVSDGAKCDISR-LQIV--FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAE 180 (433)
Q Consensus 106 g~~~lr~~la~~l~~~~~~~~~~i--~~~~G~~~al~~-l~~l--~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~ 180 (433)
...++.+.+.+++.+.++++++++ ++|+|++++... +... ..++++|++.+-.|++....++.+|.
T Consensus 62 ~~~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~~~lg~--------- 132 (380)
T PRK02769 62 NSFDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIARLLRI--------- 132 (380)
T ss_pred ChHHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHHHHcCC---------
Confidence 345666666666666568876665 889999999654 3222 35788999999999999988888884
Q ss_pred ccceEEEeecCccCCcccC-CCC-----CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcC---CEEEEeccccccc
Q 045431 181 KYGKIEYMRCTAENGFFPD-LST-----VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNG---SIIVYDSAYALYI 251 (433)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~---~~li~De~~~~~~ 251 (433)
+...++.++++..+.+ +++ ..++.+|+++.++|+||.+-| +++|.++|++|| +++++|.+++.+.
T Consensus 133 ---~~~~V~~~~~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idp---i~~I~~i~~~~g~~~~~lHVDaA~gg~~ 206 (380)
T PRK02769 133 ---KSRVITSLPNGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDN---IKEIQEILKKIGIDDYYIHADAALSGMI 206 (380)
T ss_pred ---CCceeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCC---HHHHHHHHHHhCCCceEEEEEeccccee
Confidence 4445555543322222 211 124788888899999999988 788888899998 6999999998643
Q ss_pred cC--CCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHh
Q 045431 252 SD--DNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLAC 329 (433)
Q Consensus 252 ~~--~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 329 (433)
.. ....++ .+. .+...+..|.+|+++ ....+|+++++++.+..... ..+-+.........+.+.....++.+.
T Consensus 207 ~p~~~~~~~~-d~~--~~vDsis~s~HK~~~-~P~g~G~l~~r~~~~~~~~~-~~~yl~~~d~t~~GSR~g~~~l~lw~a 281 (380)
T PRK02769 207 LPFVNNPPPF-SFA--DGIDSIAISGHKFIG-SPMPCGIVLAKKKYVERISV-DVDYIGSRDQTISGSRNGHTALLLWAA 281 (380)
T ss_pred ecccCccccC-Ccc--CCCCEEEECCcccCC-CCCCcEEEEEehhhhhhccc-CccccCCCCCCccCCCCcHHHHHHHHH
Confidence 31 111111 111 122366779999986 45568999988776421000 000000000000111222333334444
Q ss_pred cCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCe
Q 045431 330 LSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGF 409 (433)
Q Consensus 330 l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~ 409 (433)
++..+...+++..++..+..+++.+.|++.|++.......+.+.++.+. .++ . + |..+.+- ++.
T Consensus 282 L~~lg~~G~~~~~~~~~~la~~l~~~L~~~g~~~~~~p~~~~v~f~~~~---~~~----~-~-~w~l~~~-------~~~ 345 (380)
T PRK02769 282 IRSLGSKGLRQRVQHCLDMAQYAVDRLQANGIPAWRNPNSITVVFPCPS---ERI----W-K-KWHLATS-------GNQ 345 (380)
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEcCCCceEEEEcCCC---HHH----H-h-CeeEccc-------CCE
Confidence 4444445678888999999999999999889887765566666666542 121 1 2 5555432 247
Q ss_pred EEEeecc--ChhHHHHHHHHHHHhh
Q 045431 410 IRVSAFG--HRGNVLEACKRFKHLY 432 (433)
Q Consensus 410 iRi~~~~--~~~~l~~~l~~l~~~l 432 (433)
+|++++. +.+.+++.++.|...+
T Consensus 346 ~hi~~~~~~~~~~~~~f~~dl~~~~ 370 (380)
T PRK02769 346 AHIITMPHHNKQQIDSLIDELIFDL 370 (380)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHH
Confidence 9998643 6778999999887654
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-14 Score=137.59 Aligned_cols=317 Identities=12% Similarity=0.090 Sum_probs=185.2
Q ss_pred CCChHHHHHHHHHHHhhcccCCCCCCCCC--CCCCHHHHHHHHHHHhccCCCCC-CcEEEc-CChHHHHHH-HHHhcCCC
Q 045431 75 EPIPEVITSALAKRSYALSTQEGYSGYGA--EQGEKPLRAAIASTFYKDLGIEE-GDIFVS-DGAKCDISR-LQIVFGSN 149 (433)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~la~~l~~~~~~~~-~~i~~~-~G~~~al~~-l~~l~~~g 149 (433)
...|+.+++++.+..... .....+++ ..-..+.|+.+++++ ++++ .+|+++ +|++.++++ +..++.+
T Consensus 12 ~~~~~~v~~a~~~~~~~~---~~~~hr~~~f~~~~~~~r~~l~~l~----~~~~~~~v~f~~gs~T~a~~~~~~~l~~~- 83 (361)
T TIGR01366 12 SKVRLEQLQALTTTAASL---FGTSHRQAPVKNLVGRVREGLAELF----SLPDGYEVILGNGGATAFWDAATFGLIEK- 83 (361)
T ss_pred cCCCHHHHHHHHhcCccc---cccCcCChHHHHHHHHHHHHHHHHh----CCCCCceEEEECCchhHHHHHHHHhcccc-
Confidence 456788888876532110 00112211 234566677777776 7754 478886 559999997 5666643
Q ss_pred CEEEEeCCCChh-hhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHH
Q 045431 150 VTMAVQDPSYPA-YVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLT 228 (433)
Q Consensus 150 d~Vl~~~p~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~ 228 (433)
+.+++..-.|.. ..+........ .++..++.+... ..+....+++++|.+++.+|.||+..+.++
T Consensus 84 ~~l~i~~G~~~~~~~~~a~~~~~~----------~~~~~~~~~~~~--~~~~~~~~~~~lV~~~h~et~tG~~~pi~~-- 149 (361)
T TIGR01366 84 KSLHLSFGEFSSKFAKAVKLAPWL----------GEPIIVTADPGS--APEPQADPGVDVIAWAHNETSTGVAVPVRR-- 149 (361)
T ss_pred cccEEecCHHHHHHHHHHHhhhcc----------CCceEEecCCCC--CCCCccCCCCCEEEEcccCCccceeccccc--
Confidence 333333333432 22222221100 123444443322 222233468999999999999999999544
Q ss_pred HHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCc-------
Q 045431 229 RLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGF------- 301 (433)
Q Consensus 229 ~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~------- 301 (433)
| ++++|+++|+|.+.+.. ..+..+.. ..+++.|..|.+|.+| .+++++++++.+.+..+
T Consensus 150 -I---~~~~g~~~iVDavqs~g---~~~idv~~------~D~~~~s~~K~lg~~~-Gl~~~~~s~~~~~~~~~~~~~~~~ 215 (361)
T TIGR01366 150 -P---EGSDDALVVIDATSGAG---GLPVDIAE------TDVYYFAPQKNFASDG-GLWLAIMSPAALERIEAIAASGRW 215 (361)
T ss_pred -c---cccCCCeEEEEcCcccc---CCCCCHHH------CCEEEEEchhhcCCCC-ceEEEEECHHHHhhhhcccCCCCC
Confidence 4 47899999999998832 11333332 2378899999998764 26777778776522110
Q ss_pred --chhHHHHHHH-----hhccCCCcHH---HHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcC-Ceeec-CC--
Q 045431 302 --PVAKDFNRIV-----CTCFNGASNI---SQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLG-FKVYG-GK-- 367 (433)
Q Consensus 302 --~~~~~~~~~~-----~~~~~~~~~~---~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~-~~-- 367 (433)
... .+.... ..+.++++.. +..+++.++...+ .++.+.++.++..+.+.+.+.+.+ +.... ..
T Consensus 216 ~p~~~-d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~g--g~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~ 292 (361)
T TIGR01366 216 VPEFL-SLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNG--GLDWAVARTADSSSRLYSWAQERPYATPFVTDPGK 292 (361)
T ss_pred Cchhh-hHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhh
Confidence 011 111111 1223333444 2233444444331 247777889999999999999986 44432 11
Q ss_pred -CccEEEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhhC
Q 045431 368 -NAPYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 368 -~g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l~ 433 (433)
......+.++ +.+..++...+ +++||.+.++.. .-+.+.+|+|+ +++.++++.+++.|+++++
T Consensus 293 ~s~~v~~v~~~~g~~~~~v~~~L-~~~gI~i~~~~~--~l~~~~vRis~~~~~t~~di~~l~~al~~~~~ 359 (361)
T TIGR01366 293 RSQVVGTIDFVDDIDAATVAKIL-RANGIVDTEPYR--KLGRNQLRVAMFPAIDPDDVEALTECVDWVVE 359 (361)
T ss_pred cccceEEEECCCccCHHHHHHHH-HHCCCeeccCcc--ccCCCcEEEEcCCCCCHHHHHHHHHHHHHHHh
Confidence 1122334444 45566666666 455999977642 22356899995 5689999999999998763
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=3e-14 Score=139.28 Aligned_cols=350 Identities=8% Similarity=0.030 Sum_probs=197.7
Q ss_pred HHHHHHhcCCCCceEEecCCCC--C-CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCc
Q 045431 52 RKAAHMLKYPDAEVISLGIGDT--T-EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGD 128 (433)
Q Consensus 52 ~~~~~~~~~~~~~~i~l~~g~~--~-~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~ 128 (433)
.++......+++..||+..|.. . -..+|.+.+++.+++.+.......+.+ ..+.+..+|+.+.+..+...+.
T Consensus 39 a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~-----~~~~~~~lae~L~~~~p~~~~~ 113 (456)
T PRK07480 39 AEGVYLWDSEGNKILDGMAGLWCVNVGYGRKELADAAARQMRELPYYNTFFKT-----THPPAIELAAKLAEVAPPGFNH 113 (456)
T ss_pred ceeeEEEeCCCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCccccccc-----CCHHHHHHHHHHHHhCCCCcCE
Confidence 3334444556778999976642 2 236789999999998764211111122 2344455555554323333468
Q ss_pred EEEcCChHHHHHH-HH--Hhc----C-C-CCEEEEeCCCChhhhhhHHHhCCccc-ccccccccceEEEeecCc------
Q 045431 129 IFVSDGAKCDISR-LQ--IVF----G-S-NVTMAVQDPSYPAYVDSSVIMGQTGE-FQKDAEKYGKIEYMRCTA------ 192 (433)
Q Consensus 129 i~~~~G~~~al~~-l~--~l~----~-~-gd~Vl~~~p~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~------ 192 (433)
+++++++++|... +. ... . + ..+|+...-+|++..-....++.... ....+.....+..++...
T Consensus 114 v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 193 (456)
T PRK07480 114 VFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGG 193 (456)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCccccccc
Confidence 9999999999875 31 111 1 2 34688888888775422222221110 000111111122222110
Q ss_pred ---cCCc----ccCCC-----C-CCCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCC
Q 045431 193 ---ENGF----FPDLS-----T-VARTDIIFFCSP-NNPTGAA-ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPR 257 (433)
Q Consensus 193 ---~~~~----~~~~~-----~-~~~~~~i~l~~p-~nPtG~~-~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~ 257 (433)
...+ ...++ . ..++.+|+ ..| +.-.|.. .+.+.+++|.++|++||+++|.||++..|...+...
T Consensus 194 ~~~~~~~~~~~~~~l~~~~~~~~~~~vAAvi-~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~ 272 (456)
T PRK07480 194 DMTPEEFGLAAARQLEAKILELGADNVAAFI-GEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEWF 272 (456)
T ss_pred CCChHHHHHHHHHHHHHHHHhcCCCcEEEEE-EccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchh
Confidence 0000 00111 1 13455555 455 5545664 577789999999999999999999998875555433
Q ss_pred cccccCCCCcceEEEeccccccccccc-ceeeeeccccccccCCcchhHHHH----HHHhhccCCCcHHHHHHHHHhcCc
Q 045431 258 SIFEIPGAKEVAIETSSFSKYAGFTGV-RLGWTVIPKELLFSDGFPVAKDFN----RIVCTCFNGASNISQAGGLACLSP 332 (433)
Q Consensus 258 ~~~~~~~~~~~vi~i~S~sK~~~~~G~-r~G~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~q~~~~~~l~~ 332 (433)
....++-.+| +-+|+|.++ .|. .+|.+++++++. +.+. .+...++++.++++.+++.+.|+.
T Consensus 273 a~~~~gv~PD----iv~~gK~l~-gG~~Pi~av~~~~~i~--------~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~ 339 (456)
T PRK07480 273 GSQHFGIKPD----LMTIAKGLT-SGYIPMGAVGVGDRVA--------EVLIEEGGEFNHGFTYSGHPVAAAVALANLRI 339 (456)
T ss_pred hhhhcCCCCC----eeeeehhhc-cCCccceEEEEcHHHH--------HHHhcCCCCcccCCCCCcCHHHHHHHHHHHHH
Confidence 3333332344 336899997 784 899999988874 3331 123445667889999988888863
Q ss_pred CChhHHHHHHHHH-HHHHHHHHHHHhh---cCC-eeecCCCccEEEEECCCC--------C----hHHHHHHHHHcCCeE
Q 045431 333 EGFKAVHEVIGFY-KENTDIIVETFNS---LGF-KVYGGKNAPYVWVQFPGR--------S----SWDVFSEILEKTHVV 395 (433)
Q Consensus 333 ~~~~~~~~~~~~~-~~~~~~l~~~l~~---~g~-~~~~~~~g~~~~~~~~~~--------~----~~~~~~~l~~~~gi~ 395 (433)
... +.+.++. +++.+++.+.|++ +++ .-+.. .|+++-+.+... . ...+...++ ++||.
T Consensus 340 l~~---~~l~~~~~~~~g~~l~~~l~~l~~~~~i~~vrG-~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gll 414 (456)
T PRK07480 340 LRD---EGIVERVRDDTGPYLQKRLRELADHPLVGEVRG-VGLVGAIELVKDKATRERFEAGGGVGTICRDHCF-ANGLI 414 (456)
T ss_pred HHh---CCHHHHHHHHHHHHHHHHHHHhhcCCCeeeEEe-ecceEEEEEeccccccccCcchhhHHHHHHHHHH-HCCcE
Confidence 221 2233344 2444444444443 332 11222 456666666310 1 123334444 55999
Q ss_pred ecCCCCCCCCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 396 TTPGSGFGPGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 396 v~~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
+.+. .+.+||+ +..+++++++++++|.+++
T Consensus 415 ~~~~-------~~~l~~~Ppl~it~~eid~~~~~l~~al 446 (456)
T PRK07480 415 MRAV-------GDRMIISPPLVITHAEIDELVEKARKAL 446 (456)
T ss_pred Eeec-------CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 9652 1468998 4569999999999998876
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.7e-14 Score=133.60 Aligned_cols=214 Identities=10% Similarity=0.097 Sum_probs=141.2
Q ss_pred CCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHH-hCCccccccccccc
Q 045431 105 QGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVI-MGQTGEFQKDAEKY 182 (433)
Q Consensus 105 ~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~-~g~~~~~~~~~~~~ 182 (433)
+....|.+.||+.- ..+..++++++++|+++ +..++++||+|++....|.+....+.. +...|
T Consensus 62 Pt~~~le~~la~LE------g~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~G--------- 126 (395)
T PRK08114 62 LTHFSLQEAMCELE------GGAGCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLG--------- 126 (395)
T ss_pred hhHHHHHHHHHHHh------CCCeEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcC---------
Confidence 34566777777752 23567777779999996 688899999999999999887766532 22122
Q ss_pred ceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcC--CEEEEeccccccccCCCCCccc
Q 045431 183 GKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNG--SIIVYDSAYALYISDDNPRSIF 260 (433)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~--~~li~De~~~~~~~~~~~~~~~ 260 (433)
.++..++..+...+...+ .+++++|++.+|.||||.+.+ +++|+++|++++ +++++|.+++.-.. ....
T Consensus 127 i~v~~vd~~d~~~l~~~l--~~~TrlV~~EtpsNp~~~v~D---I~~Ia~ia~~~g~g~~lvVDnT~a~p~~----~~pl 197 (395)
T PRK08114 127 VTTTWFDPLIGADIAKLI--QPNTKVVFLESPGSITMEVHD---VPAIVAAVRSVNPDAVIMIDNTWAAGVL----FKAL 197 (395)
T ss_pred cEEEEECCCCHHHHHHhc--CCCceEEEEECCCCCCCEeec---HHHHHHHHHHhCCCCEEEEECCCccccc----cCHH
Confidence 366666543222222112 257899999999999999988 889999999984 99999999974111 1111
Q ss_pred ccCCCCcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHH
Q 045431 261 EIPGAKEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVH 339 (433)
Q Consensus 261 ~~~~~~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~ 339 (433)
.+ +-.+++.|.+|.++-++ .-.|.++.+++.. +.+...........++.... +...+.+.+.
T Consensus 198 ~~----GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~--------~~l~~~~~~~G~~~~p~~a~-----l~~rgl~TL~ 260 (395)
T PRK08114 198 DF----GIDISIQAGTKYLVGHSDAMIGTAVANARCW--------EQLRENSYLMGQMVDADTAY-----MTSRGLRTLG 260 (395)
T ss_pred Hc----CCcEEEEcCcccccCCCcceeEEEEcCHHHH--------HHHHHHHHhccCCCCHHHHH-----HHHcCCCcHH
Confidence 22 23499999999876443 5678777665542 33433332222233333322 2223445567
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 045431 340 EVIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 340 ~~~~~~~~~~~~l~~~l~~~ 359 (433)
-+.++..++...+.+.|+++
T Consensus 261 lR~~~~~~na~~va~~L~~h 280 (395)
T PRK08114 261 VRLRQHEESSLKVAEWLAEH 280 (395)
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 77788889999999999987
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.9e-14 Score=137.90 Aligned_cols=351 Identities=11% Similarity=0.095 Sum_probs=199.8
Q ss_pred HHHHHHhcCCCCceEEecCCCCC---CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCC-C-
Q 045431 52 RKAAHMLKYPDAEVISLGIGDTT---EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIE-E- 126 (433)
Q Consensus 52 ~~~~~~~~~~~~~~i~l~~g~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~-~- 126 (433)
..+......+++..||+..|.-. -..+|.+.+++.+++.+.. ..... .-..+.+..+|+.+....+.. .
T Consensus 47 a~G~~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~q~~~~~---~~~~~---~~~~~~~~~lAe~L~~~~p~~~~~ 120 (459)
T PRK06931 47 AQGVWVTDVEGNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTSGL---PLHTL---DLTTPLKDAFSEYLLSLLPGQGKE 120 (459)
T ss_pred ccccEEEeCCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhhc---ccccc---ccCCHHHHHHHHHHHHhCCCcccc
Confidence 34444555677889999777532 2467899999999886421 01110 012355555666654322211 1
Q ss_pred -CcEEEcCChHHHHHH-H--HHhcCCCCEEEEeCCCChhhhhhHHHhCCc-ccccccccccceEEEeecCcc-----C--
Q 045431 127 -GDIFVSDGAKCDISR-L--QIVFGSNVTMAVQDPSYPAYVDSSVIMGQT-GEFQKDAEKYGKIEYMRCTAE-----N-- 194 (433)
Q Consensus 127 -~~i~~~~G~~~al~~-l--~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~-----~-- 194 (433)
..+++++++++|... + .......++|+..+.+|++........+.. .....++.....+..++.... +
T Consensus 121 ~~~~f~~~SGsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (459)
T PRK06931 121 YCLQFTGPSGADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIG 200 (459)
T ss_pred ceEEEeCCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccCC
Confidence 234666777888775 3 222344568888999998876555433221 111111111122333332210 0
Q ss_pred ---Ccc------cC-CC----CCCCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCc
Q 045431 195 ---GFF------PD-LS----TVARTDIIFFCSP-NNPTGAA-ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRS 258 (433)
Q Consensus 195 ---~~~------~~-~~----~~~~~~~i~l~~p-~nPtG~~-~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~ 258 (433)
+.. .+ ++ ...++.+|+ .-| +.-.|.. .+.+.++++.++|++||+++|.||+..+|...|....
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI-~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a 279 (459)
T PRK06931 201 GEAGVKALTYYFENFIEDVESGVRKPAAVI-LEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFA 279 (459)
T ss_pred chhHHHHHHHHHHHHHHhhhcCCCceEEEE-EccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHHH
Confidence 000 00 01 012345544 456 4444654 5788999999999999999999999998865554332
Q ss_pred ccccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHH
Q 045431 259 IFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAV 338 (433)
Q Consensus 259 ~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~ 338 (433)
...+.-.+| +-+++|.++ .|+.+|.+++++.+ +.+......++.+.++++.+++.+.|+....
T Consensus 280 ~~~~gv~PD----ivt~gK~l~-gG~Pi~av~~~~~~---------~~~~~~~~~~T~~gnpla~aaala~L~~l~~--- 342 (459)
T PRK06931 280 FEHAGIEPD----IIVMSKAVG-GGLPLAVLGIKKEF---------DAWQPGGHTGTFRGNQLAMATGLTTLKILKE--- 342 (459)
T ss_pred hhhcCCCCC----EEEeccccc-CCcceeeeeeHHHH---------hhccCCCCCCCCCCCHHHHHHHHHHHHHHHh---
Confidence 222332345 236799998 89999988876543 2222223455667889999888888763221
Q ss_pred HHHHHHHHHHHHHHHHHHhh----cCC-eeecCCCccEEEEECCCC------------C---hHHHHHHHHHcCCeEecC
Q 045431 339 HEVIGFYKENTDIIVETFNS----LGF-KVYGGKNAPYVWVQFPGR------------S---SWDVFSEILEKTHVVTTP 398 (433)
Q Consensus 339 ~~~~~~~~~~~~~l~~~l~~----~g~-~~~~~~~g~~~~~~~~~~------------~---~~~~~~~l~~~~gi~v~~ 398 (433)
+...++.++.-+++.+.|++ +++ .-+. ..|.++.+.+... + ...+...++ ++||.+.+
T Consensus 343 ~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~vr-G~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gvl~~~ 420 (459)
T PRK06931 343 ENLAQNAAERGEWLKAQLAELQKRYPCIGNVR-GRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACF-ENGLLLER 420 (459)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCCeEeEe-cCceEEEEEEccCcccccccccCCccHHHHHHHHHHHH-HCCcEEee
Confidence 23344455555555555544 332 1122 2456666666311 0 123344444 45999976
Q ss_pred CCCCCCCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 399 GSGFGPGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 399 g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
+.. ..+.+|+. +..+++++++++++|.+++
T Consensus 421 ~~~----~~~~l~~~Ppl~it~~eid~~~~~l~~~l 452 (459)
T PRK06931 421 GGR----NGNVVRLLPPLLITQAECEEFIDRFEQAL 452 (459)
T ss_pred cCC----CCCEEEEECCCCcCHHHHHHHHHHHHHHH
Confidence 422 23678887 5679999999999998876
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.4e-14 Score=139.24 Aligned_cols=350 Identities=10% Similarity=0.064 Sum_probs=193.2
Q ss_pred HHHHHHHhcCCCCceEEecCCCC--CC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCC
Q 045431 51 RRKAAHMLKYPDAEVISLGIGDT--TE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEG 127 (433)
Q Consensus 51 ~~~~~~~~~~~~~~~i~l~~g~~--~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~ 127 (433)
+.++......+++..||+..|.- .+ ..+|.+.+++.+++.+... ...+ ..+..+....+++.+....+...+
T Consensus 42 ~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~A~~~q~~~~~~---~~~~--~~~~~~~~~~lae~L~~~~p~~~~ 116 (460)
T PRK12403 42 RGEGLHLWDNDGKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPY---YNMF--FHTTHPAVIELSELLFSLLPGHYS 116 (460)
T ss_pred eceeeEEEeCCCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhCCC---eecc--cccCCHHHHHHHHHHHHhCCCCcC
Confidence 34444455567778999866532 12 3679999999999986431 1111 012233444444444332233346
Q ss_pred cEEEcCChHHHHHHHHHhc--------CCCCE-EEEeCCCChhhhh-hHHHhCCcccccccccccceEEEeecCc----c
Q 045431 128 DIFVSDGAKCDISRLQIVF--------GSNVT-MAVQDPSYPAYVD-SSVIMGQTGEFQKDAEKYGKIEYMRCTA----E 193 (433)
Q Consensus 128 ~i~~~~G~~~al~~l~~l~--------~~gd~-Vl~~~p~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~ 193 (433)
.+++++++++|......+. ++++. |+....+|++... .....+.. .+...+.....+..+|... .
T Consensus 117 ~v~f~~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~-~~~~~~~~~~~~~~~~~p~~~~~~ 195 (460)
T PRK12403 117 HAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMK-FMHEMGGLIPDVAHIDEPYWYANG 195 (460)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCc-cccccCCCCCCCEEeCCCcccccc
Confidence 8999999999988632222 23333 4455667766532 22222211 1111111111122222110 0
Q ss_pred CCc---------ccCCC----C--CCCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCC
Q 045431 194 NGF---------FPDLS----T--VARTDIIFFCSP-NNPTGAA-ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNP 256 (433)
Q Consensus 194 ~~~---------~~~~~----~--~~~~~~i~l~~p-~nPtG~~-~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~ 256 (433)
.+. ..+++ . ..++.+ ++..| +.-.|.+ .+.+.+++|.++|++||+++|.||++..|...|..
T Consensus 196 ~~~~~~~~~~~~~~~le~~~~~~~~~~iaa-vI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~ 274 (460)
T PRK12403 196 GELTPAEFGRRAALQLEEKILELGAENVAG-FVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEW 274 (460)
T ss_pred cCCChHHHHHHHHHHHHHHHHHhCCCceEE-EEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchh
Confidence 000 00111 1 123444 44566 4555754 47789999999999999999999999877655543
Q ss_pred CcccccCCCCcceEEEeccccccccccc-ceeeeeccccccccCCcchhHHHHH----HHhhccCCCcHHHHHHHHHhcC
Q 045431 257 RSIFEIPGAKEVAIETSSFSKYAGFTGV-RLGWTVIPKELLFSDGFPVAKDFNR----IVCTCFNGASNISQAGGLACLS 331 (433)
Q Consensus 257 ~~~~~~~~~~~~vi~i~S~sK~~~~~G~-r~G~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~q~~~~~~l~ 331 (433)
.....++-.+| ++ +++|.++ .|. .+|.+++++++. +.+.. +...++.+.++++.+++.+.|+
T Consensus 275 ~a~e~~gv~PD-iv---~~gK~lg-gG~~Piga~v~~~~i~--------~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~ 341 (460)
T PRK12403 275 FAHEHFGFEPD-TL---SIAKGLT-SGYVPMGGLVLSKRIA--------EALVEQGGVFAHGLTYSGHPVAAAVAIANLK 341 (460)
T ss_pred hhhhhcCCCCC-eE---EEccccc-ccccceEEEEECHHHH--------HHHhcCCCccccCCCCCCCHHHHHHHHHHHH
Confidence 32222322244 23 4899998 884 999988887764 33321 1234455678888888888876
Q ss_pred cCChhHHHHHHHHHH-HHHHHHHHHHhh----cCC-eeecCCCccEEEEECCC--C-----C-----hHHHHHHHHHcCC
Q 045431 332 PEGFKAVHEVIGFYK-ENTDIIVETFNS----LGF-KVYGGKNAPYVWVQFPG--R-----S-----SWDVFSEILEKTH 393 (433)
Q Consensus 332 ~~~~~~~~~~~~~~~-~~~~~l~~~l~~----~g~-~~~~~~~g~~~~~~~~~--~-----~-----~~~~~~~l~~~~g 393 (433)
.... +.+.++.+ ++-+++.+.|++ +++ .-+. ..|.++.+.+.. . . ...+...++ +.|
T Consensus 342 ~i~~---~~l~~~~~~~~g~~l~~~L~~l~~~~~~i~~vr-G~Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G 416 (460)
T PRK12403 342 ALRD---EGVVTRVKDDTGPYLQRCLREVFGDHPLVGEVQ-GAGLVAALQFAEDKATRKRFANENDLAWRCRTIGF-EEG 416 (460)
T ss_pred HHHh---ccHHHHHHHHHHHHHHHHHHHHHhcCCCEEeEe-ecceEEEEEEccCccccccccchhHHHHHHHHHHH-hCC
Confidence 3221 22344443 455555555543 332 1122 256666666631 1 1 011223334 459
Q ss_pred eEecCCCCCCCCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 394 VVTTPGSGFGPGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 394 i~v~~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
+.+.+. .+.+|++ +..++++++++++.|.+++
T Consensus 417 ll~~~~-------~~~~~l~Ppl~it~~eid~~~~~l~~al 450 (460)
T PRK12403 417 VIIRST-------LGRMIMAPALVAGRAEIDELVDKTRIAV 450 (460)
T ss_pred EEEEec-------CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 999752 1358888 4569999999999999876
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.7e-13 Score=133.01 Aligned_cols=350 Identities=11% Similarity=0.073 Sum_probs=201.6
Q ss_pred HHHHHHhcCCCCceEEecCCCC--CC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCc
Q 045431 52 RKAAHMLKYPDAEVISLGIGDT--TE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGD 128 (433)
Q Consensus 52 ~~~~~~~~~~~~~~i~l~~g~~--~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~ 128 (433)
..+......+++..||+..|.. .+ ..+|.+.+++.+++.+.. ....+. ....+.+..+|+.+....+...+.
T Consensus 40 a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~---~~~~~~--~~~~~~~~~lae~L~~~~p~~~~~ 114 (466)
T PRK07036 40 AEGIYVTDADGRRYLDGIGGMWCVNVGYGREEMADAIADQARRLP---YYTPFG--DMTNAPAAELAAKLAELAPGDLNH 114 (466)
T ss_pred CceeEEEECCCCEEEECcccHHhhcCCCCCHHHHHHHHHHHHhCc---cccccc--ccCCHHHHHHHHHHHHhCCCCcCE
Confidence 3444455567788999977642 22 367899999999987532 111111 012344555666654422333468
Q ss_pred EEEcCChHHHHHHHHHhc-------C-C-CCEEEEeCCCChhhhhhHHHhCCcc-cccccccccceEEEeecCcc----C
Q 045431 129 IFVSDGAKCDISRLQIVF-------G-S-NVTMAVQDPSYPAYVDSSVIMGQTG-EFQKDAEKYGKIEYMRCTAE----N 194 (433)
Q Consensus 129 i~~~~G~~~al~~l~~l~-------~-~-gd~Vl~~~p~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~----~ 194 (433)
+++++++++|+.....+. . + ..+|+..+-+|++............ ....+......+..++.... .
T Consensus 115 v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 194 (466)
T PRK07036 115 VFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPA 194 (466)
T ss_pred EEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCccccccc
Confidence 999999999988632221 1 2 3678888888888653332222111 11111111111222222110 0
Q ss_pred C-----cc----cCCC------CCCCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCC
Q 045431 195 G-----FF----PDLS------TVARTDIIFFCSP-NNPTGAA-ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPR 257 (433)
Q Consensus 195 ~-----~~----~~~~------~~~~~~~i~l~~p-~nPtG~~-~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~ 257 (433)
+ +. ..++ ...++.+|+ ..| +.-.|.. .+++.+++|.++|++||+++|.||++..|...|...
T Consensus 195 ~~~~~~~~~~~~~~~~~~i~~~~~~~iAavi-~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~ 273 (466)
T PRK07036 195 GMSEAAFCDFLVDEFEDKILSLGADNIAAFI-AEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFF 273 (466)
T ss_pred CCChHHHHHHHHHHHHHHHHHcCCCceEEEE-EeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCchhh
Confidence 0 00 0011 113455544 455 5555664 578899999999999999999999998775555433
Q ss_pred ccc-ccCCCCcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHH-------HHhhccCCCcHHHHHHHHH
Q 045431 258 SIF-EIPGAKEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNR-------IVCTCFNGASNISQAGGLA 328 (433)
Q Consensus 258 ~~~-~~~~~~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~q~~~~~ 328 (433)
... .+.-.+| +-+++|.++ .| +.+|.+++++++. +.+.. +...++.+.++++.+++.+
T Consensus 274 ~~~~~~gv~PD----ivt~gK~l~-gG~~Pi~av~~~~~i~--------~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a 340 (466)
T PRK07036 274 ASEAVFGIQPD----IITFAKGLT-SGYQPLGAVIISERLL--------DVISGPNAKGNVFTHGFTYSGHPVACAAALK 340 (466)
T ss_pred hhhhhcCCCCC----EEEEccccc-cCccccEEEEEcHHHH--------HHHhcccCcCcccccCCCCCCCHHHHHHHHH
Confidence 222 1222344 336899997 88 5999999998874 33321 2233456678999888888
Q ss_pred hcCcCChhHHHHHHHHHHHHHHHHHHHHhhc---CC-eeecCCCccEEEEECCCC--------C----hHHHHHHHHHcC
Q 045431 329 CLSPEGFKAVHEVIGFYKENTDIIVETFNSL---GF-KVYGGKNAPYVWVQFPGR--------S----SWDVFSEILEKT 392 (433)
Q Consensus 329 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---g~-~~~~~~~g~~~~~~~~~~--------~----~~~~~~~l~~~~ 392 (433)
.|+.... +++.+..+++.+++.+.|+++ ++ .-+. ..|.++.+.+... . ...+...++ ++
T Consensus 341 ~Le~i~~---~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vr-G~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 415 (466)
T PRK07036 341 NIEIMER---EGLCEHVREVGPYFEERLASLRELPLVGDVR-GDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQ-ER 415 (466)
T ss_pred HHHHHHh---CCHHHHHHHHHHHHHHHHHHhccCCCEEEEE-eeceEEEEEEccCccccCCCCchhHHHHHHHHHHH-HC
Confidence 8763221 234445555556665555543 22 1122 2456666776311 0 123444444 55
Q ss_pred CeEecCCCCCCCCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 393 HVVTTPGSGFGPGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 393 gi~v~~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
||.+.+. + +.+|++ +..+++++++++++|.+++
T Consensus 416 Gvl~~~~------~-~~~~l~Ppl~it~~~id~~~~~l~~al 450 (466)
T PRK07036 416 GLLVRPL------E-HLCVLSPPLIITRAQIDEIVAILRAAI 450 (466)
T ss_pred CcEEeec------C-CEEEEeCCCcCCHHHHHHHHHHHHHHH
Confidence 9999753 1 468888 5679999999999998775
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.6e-14 Score=135.50 Aligned_cols=340 Identities=13% Similarity=0.049 Sum_probs=191.8
Q ss_pred HHHHHHhcCCCCceEEecCCCCC--C-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCc
Q 045431 52 RKAAHMLKYPDAEVISLGIGDTT--E-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGD 128 (433)
Q Consensus 52 ~~~~~~~~~~~~~~i~l~~g~~~--~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~ 128 (433)
.++......+++..||+..|... + ..+|.+.+++.+++.+.. ...+ + .+....+|+.+.+..+ .+.
T Consensus 64 a~G~~v~D~DG~~yiD~~~g~g~~~lGh~~p~i~~Av~~q~~~~~----~~~~-~----~~~~~~lAe~l~~~~~--~~~ 132 (453)
T PRK07046 64 ARGARFTDVDGHRYDDFCLGDTGAMFGHSPAPVARALAEQARRGL----TTML-P----SEDAAWVGEELARRFG--LPY 132 (453)
T ss_pred eeeCEEEeCCCCEEEEecccccccccCCCCHHHHHHHHHHHHhCC----CCCC-C----CHHHHHHHHHHHHHhC--CCE
Confidence 34444455667889999766532 2 367899999999987521 1222 2 2444455555544333 579
Q ss_pred EEEcCChHHHHHH-H--HHhcCCCCEEEEeCCCChhhhhhHHHh--CCcccccc--ccc---ccceEEEeecCccCCccc
Q 045431 129 IFVSDGAKCDISR-L--QIVFGSNVTMAVQDPSYPAYVDSSVIM--GQTGEFQK--DAE---KYGKIEYMRCTAENGFFP 198 (433)
Q Consensus 129 i~~~~G~~~al~~-l--~~l~~~gd~Vl~~~p~~~~~~~~~~~~--g~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~ 198 (433)
+.+++++++|... + .......++|+..+-+|++........ +....... .+. ....+..++.++...+..
T Consensus 133 v~F~nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd~~~l~~ 212 (453)
T PRK07046 133 WQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEFNDLAALEA 212 (453)
T ss_pred EEEECCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCCCCHHHHHH
Confidence 9999999999875 3 222344578888888898864322211 10000000 000 001223333322111111
Q ss_pred CCCCCCCccEEEEcCC-CCcccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccC-CCCCcccccCCCCcceEEEecc
Q 045431 199 DLSTVARTDIIFFCSP-NNPTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYISD-DNPRSIFEIPGAKEVAIETSSF 275 (433)
Q Consensus 199 ~~~~~~~~~~i~l~~p-~nPtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~-~~~~~~~~~~~~~~~vi~i~S~ 275 (433)
.+. ..++.+|+ ..| +.-.|. ..+.+.++++.++|++||+++|.||+.. |..+ +... ..++-.+| ++ ++
T Consensus 213 ~l~-~~~vAavi-~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~t-fr~g~Gg~~--~~~gv~PD-i~---t~ 283 (453)
T PRK07046 213 ALA-DGDVAAVL-AEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHT-ISSGPGGYT--RAHGLEPD-FL---VV 283 (453)
T ss_pred HhC-CCCeEEEE-ECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc-CccCCcchh--HHhCCCcc-ce---ee
Confidence 111 23455544 466 333454 4466799999999999999999999987 4221 1111 11222244 22 68
Q ss_pred cccccccccceeeeeccccccccCCcchhHHHHH---------HHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHH
Q 045431 276 SKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNR---------IVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYK 346 (433)
Q Consensus 276 sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 346 (433)
+|.+| .|+.+|.++++++++ +.+.. ....++.+.++++.+++.+.|+.... ++..++.+
T Consensus 284 gK~lg-gG~Pi~av~g~~~i~--------~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~---~~~~~~~~ 351 (453)
T PRK07046 284 GKPIA-GGVPCAVYGFSAELA--------ERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMT---EAAYAHML 351 (453)
T ss_pred hhhhc-CCCcceeeeehHHHH--------HHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhc---ccHHHHHH
Confidence 99998 899999999988874 33321 11233556788888888888763211 12233444
Q ss_pred HHHHHHHHHH----hhcCCee-ecCCCccEEEEECC-C-C----------C---hHHHHHHHHHcCCeEecCCCCCCCCC
Q 045431 347 ENTDIIVETF----NSLGFKV-YGGKNAPYVWVQFP-G-R----------S---SWDVFSEILEKTHVVTTPGSGFGPGG 406 (433)
Q Consensus 347 ~~~~~l~~~l----~~~g~~~-~~~~~g~~~~~~~~-~-~----------~---~~~~~~~l~~~~gi~v~~g~~f~~~~ 406 (433)
+.-+.+.+.| .++++.+ +...+ ..+.+.+. + . + ...+...+++ +||.+.|.
T Consensus 352 ~~g~~l~~~L~~l~~~~~~~~~v~g~G-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gv~~~~~------- 422 (453)
T PRK07046 352 ALAARLAAGLRAVIARHGLPWHVTRVG-ARVEFQFAPTPPRNGAEAAAALDPELEAALHLYLLN-RGVLITPF------- 422 (453)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEeC-cEEEEEEeCCCCCCHHHHhcccCHHHHHHHHHHHHH-CCCEEecc-------
Confidence 4444444444 4455432 22223 33344431 1 0 1 1223444444 59999762
Q ss_pred CCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 407 EGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 407 ~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
.+.++++...+++|++++++++.+++
T Consensus 423 ~~~~~~~p~~t~~did~~~~~~~~~l 448 (453)
T PRK07046 423 HNMMLVCPATTAADVDRLVAAFDACL 448 (453)
T ss_pred cCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 13578887789999999999998876
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-14 Score=140.21 Aligned_cols=351 Identities=7% Similarity=-0.018 Sum_probs=192.5
Q ss_pred HHHHHHHhcCCCCceEEecCCCCC--C-CChHHHHHHHHHH-HhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCC
Q 045431 51 RRKAAHMLKYPDAEVISLGIGDTT--E-PIPEVITSALAKR-SYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEE 126 (433)
Q Consensus 51 ~~~~~~~~~~~~~~~i~l~~g~~~--~-~~~~~~~~a~~~~-~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~ 126 (433)
+..+......+++..||+..|... + ..++.+.+++.++ ..... .....|. .....+|-+.+++.+.+..+-+.
T Consensus 46 ~a~G~~l~D~dG~~ylD~~sg~~~~~lGh~~p~i~~Ai~~q~~~~~l--~~~~~~~-~~~~~~la~~l~~~l~~~~p~~~ 122 (464)
T TIGR00699 46 KSRGNYLVDVDGNRLLDLYSQISSIPIGYNNPALLKAAQSPEMATTL--INRPALG-NFPSKDWAKILKEGILKVAPKGQ 122 (464)
T ss_pred ecccCEEEeCCCCEEEEccCCHhhhcCCCCCHHHHHHHHHHHHHHhh--cccccCC-cHHHHHHHHHHHHhHHhhCCCCc
Confidence 344444556677889999877542 2 3689999999984 22110 1112232 11223344444332222122234
Q ss_pred CcEEEcCChHHHHHHHHHhc----C-----------------------C---CCEEEEeCCCChhhhhhHHHhCCccccc
Q 045431 127 GDIFVSDGAKCDISRLQIVF----G-----------------------S---NVTMAVQDPSYPAYVDSSVIMGQTGEFQ 176 (433)
Q Consensus 127 ~~i~~~~G~~~al~~l~~l~----~-----------------------~---gd~Vl~~~p~~~~~~~~~~~~g~~~~~~ 176 (433)
+.+++++++++|.+....+. . + ..+|+....+|++.............+.
T Consensus 123 ~~v~f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~ 202 (464)
T TIGR00699 123 DQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIH 202 (464)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCcccc
Confidence 78999999999998632221 0 1 1268889999988654433332111000
Q ss_pred ccccccceEEEeecCcc----CCc-----------ccCCC----C-CCCccEEEEcCC-CCccccCC-CHHHHHHHHHHH
Q 045431 177 KDAEKYGKIEYMRCTAE----NGF-----------FPDLS----T-VARTDIIFFCSP-NNPTGAAA-TREQLTRLVQFA 234 (433)
Q Consensus 177 ~~~~~~~~~~~~~~~~~----~~~-----------~~~~~----~-~~~~~~i~l~~p-~nPtG~~~-~~~~~~~i~~~a 234 (433)
..+........+|.... ... ...++ . ..++.+|+ ..| +.-.|... +.+.+++|.++|
T Consensus 203 ~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI-~EPv~g~~G~~~~~~~yl~~lr~lc 281 (464)
T TIGR00699 203 KLDIPAFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAII-VEPIQSEGGDNHASPDFFRKLRDIT 281 (464)
T ss_pred ccCCCCCCceecCCCCcccccccccccchhHHHHHHHHHHHHHHhcCCcEEEEE-EeCCCCCCCCcCCCHHHHHHHHHHH
Confidence 00100011122222100 000 00011 1 13455555 456 55567666 788999999999
Q ss_pred HHcCCEEEEeccccccccCCCCCcccccCC--CCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHh
Q 045431 235 KDNGSIIVYDSAYALYISDDNPRSIFEIPG--AKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVC 312 (433)
Q Consensus 235 ~~~~~~li~De~~~~~~~~~~~~~~~~~~~--~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~ 312 (433)
++||+++|.||++..+...|.......++- .+| +.+++|.+| .| |+++.++ .+ ........
T Consensus 282 ~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PD----i~t~gK~lg-~g---G~~~~~~-~~--------~~~~~~~~ 344 (464)
T TIGR00699 282 KKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPD----MVTFSKKFQ-TA---GYFFHDP-AF--------RPNKPYRQ 344 (464)
T ss_pred HHcCCEEEEeeeeeCCCCCcchhHHHhcCCCCCCC----EEEehhhhc-cC---Cccccch-hc--------cCCCCccc
Confidence 999999999999987755443322222221 144 346899985 33 4443332 21 11111234
Q ss_pred hccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcC--Ce----eec-CCCccEEEEECCCCC-hHHH
Q 045431 313 TCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLG--FK----VYG-GKNAPYVWVQFPGRS-SWDV 384 (433)
Q Consensus 313 ~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g--~~----~~~-~~~g~~~~~~~~~~~-~~~~ 384 (433)
.++.+.++++.+++.+.|+.... +++.++.+++-+++.+.|+++. +. -+. ...|+++-+.++... ...+
T Consensus 345 ~~T~~gnp~~~aaa~a~L~~l~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg~G~Glm~gie~~~~~~~~~i 421 (464)
T TIGR00699 345 FNTWMGDPSRALILREIIQEIKR---KDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIAWDTPDEAKRDKL 421 (464)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCceeeecccCeEEEEEEecCCHHHHHHH
Confidence 45666788888887777652211 3344455555566666665531 22 121 125677777776322 3445
Q ss_pred HHHHHHcCCeEecCCCCCCCCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 385 FSEILEKTHVVTTPGSGFGPGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 385 ~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
...+++ +||.+.+. +.+.+||. +..+++++++++++|.+++
T Consensus 422 ~~~~~~-~Gvl~~~~------g~~~ir~~Ppl~it~~eid~~~~~l~~~~ 464 (464)
T TIGR00699 422 LKKARN-NGVNIGGC------GVKAIRLRPMLVFQKHHADIFLEIISKII 464 (464)
T ss_pred HHHHHH-CCcEEecC------CCCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 555555 59999753 34679999 5679999999999998864
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-13 Score=128.44 Aligned_cols=216 Identities=19% Similarity=0.212 Sum_probs=145.5
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCc-ccccccccc
Q 045431 104 EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQT-GEFQKDAEK 181 (433)
Q Consensus 104 ~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~-~~~~~~~~~ 181 (433)
.+....|.+.++++- ..++.+.++++.+|+.. +..++++||+|++.+..|.+....+.....+ +
T Consensus 62 nPT~~~lE~~~a~LE------g~~~~~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~g-------- 127 (396)
T COG0626 62 NPTRDALEEALAELE------GGEDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFG-------- 127 (396)
T ss_pred CccHHHHHHHHHHhh------CCCcEEEecCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcC--------
Confidence 456678888888762 45788899999999997 7999999999999999999877666554322 2
Q ss_pred cceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccc
Q 045431 182 YGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFE 261 (433)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~ 261 (433)
.++.+++..........+.. +++++|++-+|.|||-.+.+ +++|+++|+++|+.+|+|++|+.-.+.. | + .
T Consensus 128 -i~~~~~d~~~~~~~~~~~~~-~~tk~v~lEtPsNP~l~v~D---I~~i~~~A~~~g~~vvVDNTfatP~~q~-P--L-~ 198 (396)
T COG0626 128 -VEVTFVDPGDDEALEAAIKE-PNTKLVFLETPSNPLLEVPD---IPAIARLAKAYGALVVVDNTFATPVLQR-P--L-E 198 (396)
T ss_pred -eEEEEECCCChHHHHHHhcc-cCceEEEEeCCCCccccccc---HHHHHHHHHhcCCEEEEECCcccccccC-h--h-h
Confidence 25555543322111111111 58999999999999988777 8999999999999999999998533221 1 1 1
Q ss_pred cCCCCcceEEEecccccccccccc--eeeeeccccccccCCcchhHHHHHHHh-hccCCCcHHHHHHHHHhcCcCChhHH
Q 045431 262 IPGAKEVAIETSSFSKYAGFTGVR--LGWTVIPKELLFSDGFPVAKDFNRIVC-TCFNGASNISQAGGLACLSPEGFKAV 338 (433)
Q Consensus 262 ~~~~~~~vi~i~S~sK~~~~~G~r--~G~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~ 338 (433)
+ +-.|++.|.+|.++ ..-. .|.++++++.+ .+.+..... ......++.....+ + .+.+.+
T Consensus 199 ~----GaDIVvhSaTKyl~-GHsDvl~G~v~~~~~~~-------~~~~~~~~~~~~G~~l~p~dA~l~---l--RGlkTL 261 (396)
T COG0626 199 L----GADIVVHSATKYLG-GHSDVLGGVVLTPNEEL-------YELLFFAQRANTGAVLSPFDAWLL---L--RGLRTL 261 (396)
T ss_pred c----CCCEEEEecccccc-CCcceeeeEEecChHHH-------HHHHHHHHHhhcCCCCCHHHHHHH---H--hccchH
Confidence 1 22499999999986 4333 46666666664 233322222 22233344433222 2 344556
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 045431 339 HEVIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 339 ~~~~~~~~~~~~~l~~~l~~~ 359 (433)
.-+.++..++...+.+.|+++
T Consensus 262 ~~Rm~~~~~nA~~IA~~L~~~ 282 (396)
T COG0626 262 ALRMERHNENALKIAEFLADH 282 (396)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 777788888899999999986
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3e-16 Score=148.07 Aligned_cols=224 Identities=14% Similarity=0.185 Sum_probs=133.0
Q ss_pred CCCCCCCC-HHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccc
Q 045431 100 GYGAEQGE-KPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQK 177 (433)
Q Consensus 100 ~Y~~~~g~-~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~ 177 (433)
+...+.|. .+..+.+|+.+ |.+ ...++++|++.++.+ +.++++|||+|+++..||.++...+.+.|..+
T Consensus 60 ~L~~p~G~I~eAe~~aA~~f----GAd-~t~flvnGsT~g~~a~i~a~~~~gd~VLv~RN~HkSv~~alil~ga~P---- 130 (417)
T PF01276_consen 60 DLHDPEGIIKEAEELAARAF----GAD-KTFFLVNGSTSGNQAMIMALCRPGDKVLVDRNCHKSVYNALILSGAIP---- 130 (417)
T ss_dssp BTTTTBTHHHHHHHHHHHHH----TES-EEEEESSHHHHHHHHHHHHHTTTTCEEEEETT--HHHHHHHHHHTEEE----
T ss_pred cccCCccHHHHHHHHHHHhc----CCC-eEEEEecCchHHHHHHHHHhcCCCCEEEEcCCcHHHHHHHHHHcCCeE----
Confidence 33344444 45555555554 543 568899999999987 79999999999999999999999999999644
Q ss_pred cccccceEEEeecCcc-CC----ccc-----C-----CCCCCCccE---EEEcCCCCccccCCCHHHHHHHHHHHHHcCC
Q 045431 178 DAEKYGKIEYMRCTAE-NG----FFP-----D-----LSTVARTDI---IFFCSPNNPTGAAATREQLTRLVQFAKDNGS 239 (433)
Q Consensus 178 ~~~~~~~~~~~~~~~~-~~----~~~-----~-----~~~~~~~~~---i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~ 239 (433)
++++...+ .+ +.. + +++.+..++ ++|++|++ .|++++ +++|+++|+++++
T Consensus 131 --------vyi~p~~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY-~Gv~~d---i~~I~~~~h~~~~ 198 (417)
T PF01276_consen 131 --------VYIPPEDNEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTY-YGVCYD---IKEIAEICHKHGI 198 (417)
T ss_dssp --------EEEEEEE-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-T-TSEEE----HHHHHHHHCCTEC
T ss_pred --------EEecCCccccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCC-CeEEEC---HHHHHHHhcccCC
Confidence 33333211 11 111 1 122344444 99999976 899988 8999999999999
Q ss_pred EEEEeccccc-cccCCCCCcccccCC---CCcceEEEecccccccccccc-eeeeeccccc-cccCCcchhHHHHHHHhh
Q 045431 240 IIVYDSAYAL-YISDDNPRSIFEIPG---AKEVAIETSSFSKYAGFTGVR-LGWTVIPKEL-LFSDGFPVAKDFNRIVCT 313 (433)
Q Consensus 240 ~li~De~~~~-~~~~~~~~~~~~~~~---~~~~vi~i~S~sK~~~~~G~r-~G~l~~~~~~-~~~~~~~~~~~~~~~~~~ 313 (433)
+|++||+|+. +.|.+-+.+...+.. ....++++-|.+|++ +++. .+++....+. +. .+++++....
T Consensus 199 ~llvDEAhGah~~F~~lp~~a~~~gad~~~~~~~~vvqS~HKtL--~altQts~lh~~~~~~v~------~~~~~~~l~~ 270 (417)
T PF01276_consen 199 PLLVDEAHGAHFGFHPLPRSALALGADRPNDPGIIVVQSTHKTL--PALTQTSMLHVKGDRIVD------HERVNEALSM 270 (417)
T ss_dssp EEEEE-TT-TTGGCSGGGTTCSSTTSS-CTSBEEEEEEEHHHHS--SS-TT-EEEEEETCCCTT------HHHHHHHHHH
T ss_pred EEEEEccccccccCCCCccchhhccCccccccceeeeechhhcc--cccccceEEEecCCCccc------HHHHHHHHHH
Confidence 9999999985 555532333332211 124679999999998 5665 5677777764 31 2444443322
Q ss_pred ccCCCcHH----HHHHHHHhcC-cCChhHHHHHHHHHHHHHHHHHHHH
Q 045431 314 CFNGASNI----SQAGGLACLS-PEGFKAVHEVIGFYKENTDIIVETF 356 (433)
Q Consensus 314 ~~~~~~~~----~q~~~~~~l~-~~~~~~~~~~~~~~~~~~~~l~~~l 356 (433)
...+++.. +..++.+.++ ..+ +++.+...++.+.+++.+
T Consensus 271 ~~TTSPSY~lmASlD~a~~~m~~~~G----~~l~~~~i~~a~~~R~~i 314 (417)
T PF01276_consen 271 HQTTSPSYPLMASLDVARAQMEEEEG----RELLEEAIELAEEFRKKI 314 (417)
T ss_dssp HS-SS--HHHHHHHHHHHHHHSHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HcCCChHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHHHHHHH
Confidence 22222222 2333334442 222 444555556666666666
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.4e-13 Score=128.96 Aligned_cols=298 Identities=12% Similarity=0.105 Sum_probs=182.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHH-HHhcCCCCEEEEeCCCChhhhhh-HHHhCCcccccc
Q 045431 100 GYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRL-QIVFGSNVTMAVQDPSYPAYVDS-SVIMGQTGEFQK 177 (433)
Q Consensus 100 ~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l-~~l~~~gd~Vl~~~p~~~~~~~~-~~~~g~~~~~~~ 177 (433)
.|..+....+|.+++++++ |. +.++.|++++.|+.++ ...++|||.| +.|+|...... +...|.
T Consensus 66 ~yag~~s~~~lE~~va~~~----G~--~~av~v~sGT~Al~ll~~l~l~pGDeV--psn~~f~Tt~ahIe~~Ga------ 131 (450)
T TIGR02618 66 AYAGSRNFYHLERTVRELY----GF--KYVVPTHQGRGAENLLSQIAIKPGDYV--PGNMYFTTTRYHQEKNGA------ 131 (450)
T ss_pred hhcCCCcHHHHHHHHHHHH----CC--CeEEEcCCHHHHHHHHHHhCCCCcCEE--CCceeHHHHHHHHHhCCe------
Confidence 5877888999999999997 54 5799999999998875 4557999977 77777554443 566663
Q ss_pred cccccceEEEeecC---------c-cCCcccC-CCC--C----CCccEEEEcCCCCc-cccCCCHHHHHHHHHHHHHcCC
Q 045431 178 DAEKYGKIEYMRCT---------A-ENGFFPD-LST--V----ARTDIIFFCSPNNP-TGAAATREQLTRLVQFAKDNGS 239 (433)
Q Consensus 178 ~~~~~~~~~~~~~~---------~-~~~~~~~-~~~--~----~~~~~i~l~~p~nP-tG~~~~~~~~~~i~~~a~~~~~ 239 (433)
..+-++.+ + .+.++++ +++ . .++++|.+.+++|- .|.++|.+++++|.++|++||+
T Consensus 132 ------v~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl 205 (450)
T TIGR02618 132 ------TFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGI 205 (450)
T ss_pred ------EEEeeecccccccccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCC
Confidence 22222211 1 1122221 111 1 24557788888884 5899999999999999999999
Q ss_pred EEEEecccccc--cc----C-C-CCCccc----ccCCCCcceEEEeccccccccc-ccceeeeeccccccccCCcchhHH
Q 045431 240 IIVYDSAYALY--IS----D-D-NPRSIF----EIPGAKEVAIETSSFSKYAGFT-GVRLGWTVIPKELLFSDGFPVAKD 306 (433)
Q Consensus 240 ~li~De~~~~~--~~----~-~-~~~~~~----~~~~~~~~vi~i~S~sK~~~~~-G~r~G~l~~~~~~~~~~~~~~~~~ 306 (433)
.||+|.+...- .+ + + ...++. ++....| .+..|..|..+.+ | |+++.+++.+ .++
T Consensus 206 ~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD--~~~~S~~Kd~~~~~G---G~l~~~d~~l-------~~k 273 (450)
T TIGR02618 206 KVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYAD--GCTMSGKKDCLVNIG---GFLCMNDDEM-------FQS 273 (450)
T ss_pred EEEEEccchhhChhhhhcccccccCCCHHHHHHHHhccCc--EEEEeeccCCCCCCc---eEEEeCCHHH-------HHH
Confidence 99999998741 11 1 1 123342 2111122 4678899988655 4 7777555543 244
Q ss_pred HHHHHhh--cc--C-CCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECC----
Q 045431 307 FNRIVCT--CF--N-GASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFP---- 377 (433)
Q Consensus 307 ~~~~~~~--~~--~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~---- 377 (433)
.++.... .. . +.+.-...+....|.+... +...++-....++|.+.|.+.|+.+..|.+|..++++..
T Consensus 274 ~r~~~~~~eG~~tyGgla~r~~~ala~gL~e~~~---~~y~~~r~~~a~~La~~L~~~Gvpv~~p~ggh~V~vda~~~lp 350 (450)
T TIGR02618 274 AKELVVVFEGMPSYGGLAGRDMEAMAIGIREAVD---YEYIEHRVKQVRYLGDKLKAAGVPIVEPVGGHAVFLDARRFLP 350 (450)
T ss_pred HHHHhhhcCCccccCchhhhhHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHCCCcccCCCCcceEEEEhHHhCC
Confidence 4443211 11 1 1122222222223331111 122222333567888899888999988889999988753
Q ss_pred C-----CChHHHHHHHHHcCCeEecC-CCC-CC--CCC-------CCeEEEeec---cChhHHHHHHHHHHHhh
Q 045431 378 G-----RSSWDVFSEILEKTHVVTTP-GSG-FG--PGG-------EGFIRVSAF---GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 378 ~-----~~~~~~~~~l~~~~gi~v~~-g~~-f~--~~~-------~~~iRi~~~---~~~~~l~~~l~~l~~~l 432 (433)
+ .....+..+|..+.||.-.- |+. ++ +.+ -..+|+++- -|.+.++...++|..+.
T Consensus 351 h~~~~~~p~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~ 424 (450)
T TIGR02618 351 HIPQDQFPAQSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLY 424 (450)
T ss_pred CCChhhChHHHHHHHHHHHhCccEEeecceecccCCCCCcccCCccceeeeccccccccHhHHHHHHHHHHHHH
Confidence 2 24556777777777876532 222 11 110 247999962 37888888888887654
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-13 Score=133.49 Aligned_cols=331 Identities=10% Similarity=0.005 Sum_probs=198.2
Q ss_pred CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCC-C-CcEEE--cCChHHHHHH-HHHhc----
Q 045431 76 PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIE-E-GDIFV--SDGAKCDISR-LQIVF---- 146 (433)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~-~-~~i~~--~~G~~~al~~-l~~l~---- 146 (433)
++.+.+.+.+...+... ..++.......++.+.+.+|+.+.++++ + +++.. |+|++++..+ +....
T Consensus 52 ~~~p~~~~~~~~~l~~~-----~~np~s~~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~ 126 (431)
T TIGR01788 52 WMEPEARKLMDETINKN-----MIDKDEYPQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWR 126 (431)
T ss_pred CCCHHHHHHHHHHHhcC-----CCCcccCccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHH
Confidence 34566778888877531 1122223344578788888887766776 3 46655 8999999875 43221
Q ss_pred ----CC-----CCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccC-CcccC-CCC--CCCccEEEEcC
Q 045431 147 ----GS-----NVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAEN-GFFPD-LST--VARTDIIFFCS 213 (433)
Q Consensus 147 ----~~-----gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~--~~~~~~i~l~~ 213 (433)
.. ...|++.+-.|++....++.+| .++..+++++++ ..+.+ +++ .+++.+|+++.
T Consensus 127 ~~~~~~g~~~~~~~ii~s~~~H~sv~ka~~~lg------------~~v~~i~~d~~~~~vd~~~L~~~i~~~t~lV~~t~ 194 (431)
T TIGR01788 127 KRMEAAGKPTDKPNLVMGSNVQVCWEKFARYFD------------VELREVPMDPGRYVIDPEQVVEAVDENTIGVVCIL 194 (431)
T ss_pred HHHHhcCCCCCCcEEEEcCcchHHHHHHHHHcC------------ceeEEEecCCCceeeCHHHHHHHHhhCCeEEEEEe
Confidence 11 2368889999999988888888 478888887632 22222 222 25678888889
Q ss_pred CCCccccCCCHHHHHHHHHHHHHc------CCEEEEeccccccc----cCCCCCcccccCCCCcceEEEecccccccccc
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDN------GSIIVYDSAYALYI----SDDNPRSIFEIPGAKEVAIETSSFSKYAGFTG 283 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~------~~~li~De~~~~~~----~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G 283 (433)
.+|.||.+.| +++|.++|+++ ++++.+|.+|+.+. ....+..+. .. .-..+.-|.+|++ +..
T Consensus 195 g~t~tG~idp---i~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~-~~---~~DSis~s~HK~~-~~P 266 (431)
T TIGR01788 195 GTTYTGEYED---VKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFR-LP---RVKSINVSGHKYG-LVY 266 (431)
T ss_pred CCCCCcccCC---HHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcC-CC---CceEEEECchhcc-CCC
Confidence 9999999988 78888888899 99999999999533 221122221 21 1224566899987 234
Q ss_pred cceeeeeccccc-cccCCcchhHHHHHHHhhccCCCcHHH-H-HHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-
Q 045431 284 VRLGWTVIPKEL-LFSDGFPVAKDFNRIVCTCFNGASNIS-Q-AGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL- 359 (433)
Q Consensus 284 ~r~G~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-q-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 359 (433)
..+|++++++.. +........+.+...........+... . ......+...+...+++..++..+..+++.+.|++.
T Consensus 267 ~g~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~ 346 (431)
T TIGR01788 267 PGVGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLG 346 (431)
T ss_pred CCcEEEEEeChHHcchhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 448998887652 100000000000000000001111111 1 111222222333567888888999999999999988
Q ss_pred CCeeecC-CCccEEEEECCC-----CChHHHHHHHHHcCCeEecCCCCC-CCCCCCeEEEeec--cChhHHHHHHHHHHH
Q 045431 360 GFKVYGG-KNAPYVWVQFPG-----RSSWDVFSEILEKTHVVTTPGSGF-GPGGEGFIRVSAF--GHRGNVLEACKRFKH 430 (433)
Q Consensus 360 g~~~~~~-~~g~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~~f-~~~~~~~iRi~~~--~~~~~l~~~l~~l~~ 430 (433)
++++..+ .....+.+++.+ .+..++.+.|. +.|+.+..-..- ...+..++|+++. .+.+.+++.++.|+.
T Consensus 347 ~~el~~~~~~~~iV~Fr~~~~~~~~~~~~~l~~~L~-~~G~~~~~~~~p~~~~~~~~lR~~~~~~~~~~~~~~~~~~~~~ 425 (431)
T TIGR01788 347 PFEIISDGSGIPLVAFKLKDDADPGYTLYDLSHRLR-ERGWIVPAYTLPKNAEDIVVMRIVVREGFSRDLAELLIEDIEA 425 (431)
T ss_pred CEEEeeCCCCceEEEEEeCCCCCCCcCHHHHHHHHH-HCCCcccCCCCCCccCCeEEEEEEecCCCCHHHHHHHHHHHHH
Confidence 5888765 345556677653 34456666655 459875321110 0123456899974 367788888888877
Q ss_pred hh
Q 045431 431 LY 432 (433)
Q Consensus 431 ~l 432 (433)
++
T Consensus 426 ~~ 427 (431)
T TIGR01788 426 AL 427 (431)
T ss_pred HH
Confidence 64
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.9e-13 Score=128.87 Aligned_cols=229 Identities=13% Similarity=0.116 Sum_probs=143.6
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhh----hHHHhCCccccccc
Q 045431 104 EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVD----SSVIMGQTGEFQKD 178 (433)
Q Consensus 104 ~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~----~~~~~g~~~~~~~~ 178 (433)
.+...+|.+.++++. +. +..++++++++|+.+ +.+++++||+|+++.+.|.+... .+...|
T Consensus 63 ~P~~~~lE~~la~le----g~--~~av~~sSG~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~~~~~~~~G-------- 128 (384)
T PRK06434 63 NPTVQAFEEKYAVLE----NA--EHALSFSSGMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKTLG-------- 128 (384)
T ss_pred ChhHHHHHHHHHHHh----CC--CcEEEeCCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHHhcC--------
Confidence 345677888888875 43 456777777789886 67889999999999887766543 334445
Q ss_pred ccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCc
Q 045431 179 AEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRS 258 (433)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~ 258 (433)
.++++++.++.+.+. +. ..++++|++.+|.|||+.+.+ +++|.++|++++ +++|.+++.- +.+ .+
T Consensus 129 ----i~v~fvd~~~~~~~~--l~-~~~tklv~~e~~snpt~~v~D---i~~I~~la~~~~--lvVD~t~~s~-~~~--~p 193 (384)
T PRK06434 129 ----IHVDYIDTDRLNSLD--FD-PSNYDLIYAESITNPTLKVPD---IKNVSSFCHEND--VIVDATFASP-YNQ--NP 193 (384)
T ss_pred ----cEEEEECCCChhhee--ec-CCCeeEEEEEcCCCCCceeec---HHHHHHHHHHcC--eEEECCCCCc-ccC--Cc
Confidence 377788776433333 22 136899998899999998766 888899999998 4669997521 111 12
Q ss_pred ccccCCCCcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhH
Q 045431 259 IFEIPGAKEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKA 337 (433)
Q Consensus 259 ~~~~~~~~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~ 337 (433)
+. . +-.+++.|.+|.++.+| .=.|.++++++.+ .+.+...........+++...... .+.+.
T Consensus 194 l~-~----gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~-------~~~~~~~~~~~G~~~~~~~A~l~~-----~gL~t 256 (384)
T PRK06434 194 LD-L----GADVVIHSATKYISGHSDVVMGVAGTNNKSI-------FNNLVERRKTLGSNPDPIQAYLAL-----RGLKT 256 (384)
T ss_pred hh-c----CCCEEEeecccccCCCCCceEEEEecCcHHH-------HHHHHHHHHhcCCCCCHHHHHHHH-----hCCCc
Confidence 21 1 12388999999996323 2246666654432 233333322222223333222222 23344
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-CC-eeecC----------CCccEEEEECCC
Q 045431 338 VHEVIGFYKENTDIIVETFNSL-GF-KVYGG----------KNAPYVWVQFPG 378 (433)
Q Consensus 338 ~~~~~~~~~~~~~~l~~~l~~~-g~-~~~~~----------~~g~~~~~~~~~ 378 (433)
+..+.++.+++...+.+.|+++ .+ .+..| ..|..+.+.+.+
T Consensus 257 L~~R~~r~~~~a~~~a~~L~~~p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~~ 309 (384)
T PRK06434 257 LGLRMEKHNKNGMELARFLRDSKKISNVYYPDTEIGKKVLRGFGGMLSFELRS 309 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccEEECCChHHHHHhcCCCCceEEEEECC
Confidence 5777788888899999999987 33 23222 134456677753
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-13 Score=134.88 Aligned_cols=351 Identities=11% Similarity=0.057 Sum_probs=199.6
Q ss_pred HHHHHHhcCCCCceEEecCCCCC---CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCC---
Q 045431 52 RKAAHMLKYPDAEVISLGIGDTT---EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIE--- 125 (433)
Q Consensus 52 ~~~~~~~~~~~~~~i~l~~g~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~--- 125 (433)
.++......+++..||+..|.-. -..++.+.+++.+++.+... .....+ ..+.+..+++.+....+..
T Consensus 52 a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~-~~~~~~-----~~~~~~~la~~L~~~~p~~~~~ 125 (464)
T PRK06938 52 ARGIYVEDVEGRQFIDCLAGAGTLALGHNHPVVIEAIQQVLADELP-LHTLDL-----TTPVKDQFVQDLFASLPEAFAR 125 (464)
T ss_pred ccccEEEeCCCCEEEEccCCccccccCCCCHHHHHHHHHHHHhhhc-cccccc-----CCHHHHHHHHHHHHhCcccccc
Confidence 34444455667889999776532 23678999999998864211 001112 1244444555543311211
Q ss_pred CCcEEEc-CChHHHHHHHHHh---cCCCCEEEEeCCCChhhhhhHHHhCCcccc-cccccccceEEEeecCccCC--c--
Q 045431 126 EGDIFVS-DGAKCDISRLQIV---FGSNVTMAVQDPSYPAYVDSSVIMGQTGEF-QKDAEKYGKIEYMRCTAENG--F-- 196 (433)
Q Consensus 126 ~~~i~~~-~G~~~al~~l~~l---~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~--~-- 196 (433)
.+.++++ +++++|......+ .....+|+..+-+|++.......+.....+ ..++....++..++...... +
T Consensus 126 ~~~v~f~~~SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 205 (464)
T PRK06938 126 EAKIQFCGPTGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGL 205 (464)
T ss_pred cceEEEeCCCcHHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccC
Confidence 1356554 6778887753222 234467888888888865443333211111 01111111223333321100 0
Q ss_pred ---------ccCCCC----C----CCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCC
Q 045431 197 ---------FPDLST----V----ARTDIIFFCSP-NNPTGAA-ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPR 257 (433)
Q Consensus 197 ---------~~~~~~----~----~~~~~i~l~~p-~nPtG~~-~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~ 257 (433)
...+++ . .++.+|+ ..| +.-.|.+ .+.+.++++.++|++||+++|.||+..+|...|...
T Consensus 206 ~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI-~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~ 284 (464)
T PRK06938 206 GGEAGVRANLHYLENLLDDPESGVVLPAAVI-LEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMF 284 (464)
T ss_pred chhhHHHHHHHHHHHHHHhhccCCCceEEEE-EccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHH
Confidence 000111 1 1345544 466 4445664 468999999999999999999999999886555433
Q ss_pred cccccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhH
Q 045431 258 SIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKA 337 (433)
Q Consensus 258 ~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~ 337 (433)
....++-.+| ++ +++|.+| .|+.+|.+++++++ +.+......++.+.++++.+++.+.|+....
T Consensus 285 a~e~~gv~PD-iv---~~gKglg-gG~PlsAv~~~~~~---------~~~~~~~~~~T~~gnpla~Aaa~a~L~~l~~-- 348 (464)
T PRK06938 285 AFEHAGIIPD-VV---VLSKAIG-GSLPLAVVVYREWL---------DTWQPGAHAGTFRGNQMAMAAGSATLRYIKE-- 348 (464)
T ss_pred HHHhcCCCCC-EE---Eeecccc-CCCceEEEeehhHh---------hccCCCCCCCCCCcCHHHHHHHHHHHHHHHH--
Confidence 2222332345 33 5799998 89999999987663 1121223445667889999988888863222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc----CC-eeecCCCccEEEEECCCC------------C---hHHHHHHHHHcCCeEec
Q 045431 338 VHEVIGFYKENTDIIVETFNSL----GF-KVYGGKNAPYVWVQFPGR------------S---SWDVFSEILEKTHVVTT 397 (433)
Q Consensus 338 ~~~~~~~~~~~~~~l~~~l~~~----g~-~~~~~~~g~~~~~~~~~~------------~---~~~~~~~l~~~~gi~v~ 397 (433)
+++.++.++.-+++.+.|+++ ++ .-+. ..|+++.+.+... + ...+...++ ++||.+.
T Consensus 349 -~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~Vr-G~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gll~~ 425 (464)
T PRK06938 349 -HRLAEHAAAMGERLREHLRQLQRDYPQLGDVR-GRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECL-RRGLILE 425 (464)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHhCCCeeeee-ccceEEEEEeccCcccccccccCCccHHHHHHHHHHHH-HCCeEEe
Confidence 334455555556666666543 32 1122 2466666766311 0 123444554 4699997
Q ss_pred CCCCCCCCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 398 PGSGFGPGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 398 ~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
++..+ .+.+|+. +..++++++++++++.+++
T Consensus 426 ~~g~~----~~~l~~~Ppl~it~~eid~~~~~l~~~l 458 (464)
T PRK06938 426 LGGRH----GSVVRFLPPLIITAEQIDEVAEIFAEAV 458 (464)
T ss_pred ecCCC----CCEEEEECCCccCHHHHHHHHHHHHHHH
Confidence 64221 3679997 5679999999999998876
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.5e-14 Score=134.82 Aligned_cols=212 Identities=20% Similarity=0.225 Sum_probs=135.4
Q ss_pred CHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhC-Ccccccccccccce
Q 045431 107 EKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMG-QTGEFQKDAEKYGK 184 (433)
Q Consensus 107 ~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g-~~~~~~~~~~~~~~ 184 (433)
...|.+.|++.- + .+.+++++++++|+.+ +.+++++||+|++....|.+....++..- ..+ ..
T Consensus 57 ~~~le~~la~Le----~--g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~g---------v~ 121 (386)
T PF01053_consen 57 VRALEQRLAALE----G--GEDALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFG---------VE 121 (386)
T ss_dssp HHHHHHHHHHHH----T---SEEEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTT---------SE
T ss_pred HHHHHHHHHHhh----c--ccceeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccC---------cE
Confidence 445666666653 3 3678999999999976 78999999999999999999876666421 112 36
Q ss_pred EEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcC-CEEEEeccccccccCCCCCcccccC
Q 045431 185 IEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNG-SIIVYDSAYALYISDDNPRSIFEIP 263 (433)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~-~~li~De~~~~~~~~~~~~~~~~~~ 263 (433)
+.+++..+...+...+ .+++++||+-+|.||+..+.+ +++|+++|+++| +++|+|+.++..... .++ .+
T Consensus 122 v~~~d~~d~~~l~~~l--~~~t~~v~~EspsNP~l~v~D---l~~i~~~a~~~g~~~~vVDnT~atp~~~---~pL-~~- 191 (386)
T PF01053_consen 122 VTFVDPTDLEALEAAL--RPNTKLVFLESPSNPTLEVPD---LEAIAKLAKEHGDILVVVDNTFATPYNQ---NPL-EL- 191 (386)
T ss_dssp EEEESTTSHHHHHHHH--CTTEEEEEEESSBTTTTB------HHHHHHHHHHTTT-EEEEECTTTHTTTC----GG-GG-
T ss_pred EEEeCchhHHHHHhhc--cccceEEEEEcCCCccccccc---HHHHHHHHHHhCCceEEeeccccceeee---ccC-cC-
Confidence 6666543222221112 258999999899999988777 899999999998 999999999742111 112 22
Q ss_pred CCCcceEEEecccccccccc-cceeeeeccc--cccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHH
Q 045431 264 GAKEVAIETSSFSKYAGFTG-VRLGWTVIPK--ELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHE 340 (433)
Q Consensus 264 ~~~~~vi~i~S~sK~~~~~G-~r~G~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~ 340 (433)
+-.|++.|.+|.++-.| .=.|.++++. ++ .+.+...........++.......+ +.+.+.-
T Consensus 192 ---GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~--------~~~l~~~~~~~G~~~~p~da~ll~r-----gl~Tl~~ 255 (386)
T PF01053_consen 192 ---GADIVVHSATKYLSGHSDVMGGAVVVNGSSEL--------YDRLREFRRLLGATLSPFDAWLLLR-----GLRTLPL 255 (386)
T ss_dssp ---T-SEEEEETTTTTTTSSSE-EEEEEESSHHHH--------HHHHHHHHHHHT-B--HHHHHHHHH-----HHTTHHH
T ss_pred ---CceEEEeeccccccCCcceeeEEEEECchhhh--------hhhhcchhhhcCccchHHHHHHHhc-----CCCcHHH
Confidence 12388999999885222 2257777665 33 2444444433333334433332232 3344677
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 045431 341 VIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 341 ~~~~~~~~~~~l~~~l~~~ 359 (433)
+.++..++...+.+.|+++
T Consensus 256 R~~~~~~nA~~lA~~L~~h 274 (386)
T PF01053_consen 256 RMERQNENAEALAEFLEEH 274 (386)
T ss_dssp HHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 7788889999999999987
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-14 Score=127.60 Aligned_cols=339 Identities=11% Similarity=0.128 Sum_probs=208.9
Q ss_pred cCCCCceEEecCCCC---CCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCCh
Q 045431 59 KYPDAEVISLGIGDT---TEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGA 135 (433)
Q Consensus 59 ~~~~~~~i~l~~g~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~ 135 (433)
..++...+||-.+.. --.+.|.+++++++...+.. ..+...|. .-..++.+.+.+++ + -+.++.++-+
T Consensus 55 D~eGk~ylDflsaysaVnqGhchpki~~aLqeq~~kLt-lssrafYn--d~~~~f~~~vt~lf----~--~~kvlpmnTG 125 (427)
T KOG1402|consen 55 DPEGKEYLDFLSAYSAVNQGHCHPKIIKALQEQADKLT-LSSRAFYN--DVLGEFAEYVTKLF----G--YDKVLPMNTG 125 (427)
T ss_pred CCCccchhhhhhhhhhcccCCCCHHHHHHHHHHHhHhh-hhhHHHhh--hhHHHHHHHHHHhc----C--cceeeecccc
Confidence 334555677644433 24689999999999998653 23333452 23445555555553 3 3566666655
Q ss_pred HHHHHHHHHhc-------C--CCC--EEEEeCCCChh-hhhhHHHhCCcccccccccccce-EEEeecCccCCcccCCCC
Q 045431 136 KCDISRLQIVF-------G--SNV--TMAVQDPSYPA-YVDSSVIMGQTGEFQKDAEKYGK-IEYMRCTAENGFFPDLST 202 (433)
Q Consensus 136 ~~al~~l~~l~-------~--~gd--~Vl~~~p~~~~-~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 202 (433)
.++......+. + |.| .|+....+|++ ...++.+.+...-|..+|..... +..+|.++-..+...++
T Consensus 126 aEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp~~P~~~~~v~Y~d~eale~~l~- 204 (427)
T KOG1402|consen 126 AEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPGVVDKVPYGDAEALEVALK- 204 (427)
T ss_pred hhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcchhhccCCCCCCcceeeccCCHHHHHHHhc-
Confidence 66665321111 2 322 34555555544 22222222222223333333222 34444443222222222
Q ss_pred CCCccEEEEcCC-CCccccCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccc
Q 045431 203 VARTDIIFFCSP-NNPTGAAA-TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAG 280 (433)
Q Consensus 203 ~~~~~~i~l~~p-~nPtG~~~-~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~ 280 (433)
.+++.+ ++..| +.--|++. ++..+++..++|++|++++|.||++.++...|.......-...+|.++ +.|.++
T Consensus 205 ~~~vaa-FivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~la~d~env~PDivi----lgKalS 279 (427)
T KOG1402|consen 205 SPNVAA-FIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLACDYENVRPDIVI----LGKALS 279 (427)
T ss_pred CCCeeE-EEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEEEeehhhcCCCeEE----Eecccc
Confidence 256665 44567 88888766 456899999999999999999999998877765322111111355444 679886
Q ss_pred cccc-ceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc
Q 045431 281 FTGV-RLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 281 ~~G~-r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 359 (433)
.|+ .++.++++++++ -.+....+.++.+.+++..+++.++|+-..+ +++.++.+..-..+++.|.++
T Consensus 280 -GG~~Pvsavl~~~~im--------~~~~pgeHgsTyggNpLg~~vaiAalevi~e---ekL~era~~lG~~l~~~L~~l 347 (427)
T KOG1402|consen 280 -GGVYPVSAVLADDDIM--------LNIKPGEHGSTYGGNPLGCAVAIAALEVIVE---EKLVERAAKLGEILRDQLNKL 347 (427)
T ss_pred -CCeeeeEEEEecHHHH--------hccCCCccccccCCChHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhc
Confidence 664 788888888885 3355556778888999999999999874332 667777777888888888887
Q ss_pred C--C----eeecCCCccEEEEECC-----CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe--eccChhHHHHHHH
Q 045431 360 G--F----KVYGGKNAPYVWVQFP-----GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS--AFGHRGNVLEACK 426 (433)
Q Consensus 360 g--~----~~~~~~~g~~~~~~~~-----~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~ 426 (433)
. + ..+.. .|++..+.+. +.++.++. ..+++.|+...|-. .+-||++ +..+++|++++++
T Consensus 348 ~~~~p~~v~~VRG-rGl~~ai~i~~~~~~~~~aw~~c-l~lk~~g~LAkptH------~~IiRfaPPL~I~e~dl~eg~e 419 (427)
T KOG1402|consen 348 QKKFPHVVKEVRG-RGLLNAIVINPSKTSGQDAWDVC-LALKENGLLAKPTH------GNIIRFAPPLVISEEDLREGIE 419 (427)
T ss_pred cccccchhheeec-cceEEEEEeccccccchhHHHHH-HcccccccccCCCC------CCeEEecCCcccCHHHHHHHHH
Confidence 2 2 33332 5677666654 12233333 33566788887743 3589999 6789999999999
Q ss_pred HHHHhh
Q 045431 427 RFKHLY 432 (433)
Q Consensus 427 ~l~~~l 432 (433)
.+.+++
T Consensus 420 ~i~k~i 425 (427)
T KOG1402|consen 420 AIEKTI 425 (427)
T ss_pred HHHHHh
Confidence 999876
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-13 Score=145.95 Aligned_cols=342 Identities=11% Similarity=0.035 Sum_probs=200.1
Q ss_pred CCCCceEEecCCCCCC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHH
Q 045431 60 YPDAEVISLGIGDTTE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCD 138 (433)
Q Consensus 60 ~~~~~~i~l~~g~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~a 138 (433)
.+++..||+..|...+ ..+|.+.+++.+++.+... ...|. .+....+|+.|....+...+.+++++++++|
T Consensus 621 ~dG~~ylD~~~g~~~lGH~hp~v~~Ai~~q~~~l~~---~~~~~-----~~~~~~lAe~L~~~~p~~~~~v~f~nSGsEA 692 (1013)
T PRK06148 621 NRGRAYLDCFNNVCHVGHAHPRVVAAAARQAARLNT---NTRYL-----HDAIVAYAERLTATLPDGLTVAFFVNSGSEA 692 (1013)
T ss_pred CCCCEEEEcccChhhcCCCCHHHHHHHHHHHhhcCC---cCCcC-----CHHHHHHHHHHHHhCCCCcCEEEEeCCcHHH
Confidence 4467788987775433 3689999999999976421 12332 2334445555443223334688999999999
Q ss_pred HHHHHH---hcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccc-cceEEE--------eecCccC-C--------cc
Q 045431 139 ISRLQI---VFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEK-YGKIEY--------MRCTAEN-G--------FF 197 (433)
Q Consensus 139 l~~l~~---l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~--------~~~~~~~-~--------~~ 197 (433)
..+... ......+|+..+.+|++.......+.........+.. ...+.. .+.+..+ . +.
T Consensus 693 ~e~AlklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~ 772 (1013)
T PRK06148 693 NSLALRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVA 772 (1013)
T ss_pred HHHHHHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHHHH
Confidence 886322 2334567888888888765333222210000000000 001111 1111000 0 00
Q ss_pred cCCC---C-CCCccEEEEcCC-CCcccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceE
Q 045431 198 PDLS---T-VARTDIIFFCSP-NNPTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAI 270 (433)
Q Consensus 198 ~~~~---~-~~~~~~i~l~~p-~nPtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi 270 (433)
..++ . ..++.+| |..| +.-.|. ..+++.++++.++|++||+++|.||++.+|...|. ......++-.+|
T Consensus 773 ~~i~~~~~~~~~iAAv-I~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PD--- 848 (1013)
T PRK06148 773 EQIAAMAAKGRGPAFF-IAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPD--- 848 (1013)
T ss_pred HHHHhhhccCCceEEE-EEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCcc---
Confidence 0011 1 1234554 4555 333454 55888999999999999999999999988865553 232222332344
Q ss_pred EEecccccccccccceeeeeccccccccCCcchhHHHHHH-HhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHH
Q 045431 271 ETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRI-VCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENT 349 (433)
Q Consensus 271 ~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 349 (433)
+-+++|.+| .|+.+|.+++++++. +.+... ...++.+.++++.+++.+.|+.... +++.+..++.-
T Consensus 849 -ivt~gK~lg-gG~Plgav~~~~ei~--------~~~~~g~~~~~Tf~gnpla~aaa~a~L~~i~~---e~l~~~~~~~G 915 (1013)
T PRK06148 849 -IVTMGKPIG-NGHPMGAVVTTREIA--------DSFDNGMEYFNTFGGNPVSCAIGLAVLDIIED---EDLQRNALEIG 915 (1013)
T ss_pred -eeeeccccc-CCcceEEEEEcHHHH--------hhccCCCccccCCCCCHHHHHHHHHHHHHHhh---ccHHHHHHHHH
Confidence 346899998 899999999998874 333211 1335666789999888888763222 34445556666
Q ss_pred HHHHHHHhhc----CC-eeecCCCccEEEEECCCC-----C----hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe--
Q 045431 350 DIIVETFNSL----GF-KVYGGKNAPYVWVQFPGR-----S----SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS-- 413 (433)
Q Consensus 350 ~~l~~~l~~~----g~-~~~~~~~g~~~~~~~~~~-----~----~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~-- 413 (433)
+++.+.|+++ ++ .-+. ..|.++-+.+... . ...+...++ ++||.+.+... ..+.+||.
T Consensus 916 ~~l~~~L~~l~~~~~~i~~Vr-G~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~-~~Gvl~~~~g~----~~~vlr~~Pp 989 (1013)
T PRK06148 916 NYLLAGLRELQDRFDIIGDVR-GMGLFLGIELVTDRKTKAPATAIARYVKNGAR-ERGILIGTEGP----HDNVLKIRPP 989 (1013)
T ss_pred HHHHHHHHHHHHhCCCceEEe-eeceEEEEEecCCccccCccHHHHHHHHHHHH-hCCeEEeccCC----CCCEEEEeCC
Confidence 6666666553 22 1122 2466666666421 1 123444544 56999976421 23678888
Q ss_pred eccChhHHHHHHHHHHHhh
Q 045431 414 AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 414 ~~~~~~~l~~~l~~l~~~l 432 (433)
+..+++++++++++|.+++
T Consensus 990 l~it~~~id~~l~~l~~~l 1008 (1013)
T PRK06148 990 LIFSRADADHLLEVLDDVL 1008 (1013)
T ss_pred ccCCHHHHHHHHHHHHHHH
Confidence 5679999999999998876
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3e-13 Score=143.98 Aligned_cols=343 Identities=12% Similarity=0.096 Sum_probs=196.1
Q ss_pred CCCCceEEecCCCCCCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHH
Q 045431 60 YPDAEVISLGIGDTTEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCD 138 (433)
Q Consensus 60 ~~~~~~i~l~~g~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~a 138 (433)
.+++..||+..|...+. .+|.+.+++.+++.+... ...|. .+....+++.|....+-..+.+++++++++|
T Consensus 582 ~dG~~ylD~~~~~~~lGh~hp~v~~Ai~~q~~~l~~---~~~~~-----~~~~~elae~L~~~~p~~~~~v~f~~SGsEA 653 (972)
T PRK06149 582 MAGRSYLDMVNNVTVLGHGHPRLAAAAARQWSLLNT---NSRFH-----YAAVAEFSERLAALAPDGLDTVFLVNSGSEA 653 (972)
T ss_pred CCCCEEEECCCCccccCCCCHHHHHHHHHHHHhccc---ccccc-----CHHHHHHHHHHHHhCCCCcCEEEEeCCchHH
Confidence 34667889987764444 789999999999876432 11221 1333444444433223234689999999999
Q ss_pred HHH-HH--HhcCCCCEEEEeCCCChhhhhhHHHh-CCc-ccccccccccceEEEeecCc--------cCC---cccC---
Q 045431 139 ISR-LQ--IVFGSNVTMAVQDPSYPAYVDSSVIM-GQT-GEFQKDAEKYGKIEYMRCTA--------ENG---FFPD--- 199 (433)
Q Consensus 139 l~~-l~--~l~~~gd~Vl~~~p~~~~~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~--------~~~---~~~~--- 199 (433)
... +. ........|+..+-+|++.......+ +.. ............+..++... ++. +..+
T Consensus 654 ~e~AlklAr~~tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 733 (972)
T PRK06149 654 NDLAIRLAWAASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVA 733 (972)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHH
Confidence 886 42 12333456777777787644222111 110 00000000000111111100 000 0001
Q ss_pred -CC----CCCCccEEEEcCC-CCccc-cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEE
Q 045431 200 -LS----TVARTDIIFFCSP-NNPTG-AAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIE 271 (433)
Q Consensus 200 -~~----~~~~~~~i~l~~p-~nPtG-~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~ 271 (433)
++ ...++.+ +++.| +...| ...+++.++++.++|++||+++|.||++.+|...|. ......+.-.+| ++
T Consensus 734 ~l~~~~~~~~~iAa-vI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PD-iv- 810 (972)
T PRK06149 734 QLEELDASGRGLAG-FICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPD-II- 810 (972)
T ss_pred HHHHHhhcCCceEE-EEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCC-EE-
Confidence 11 1123444 44556 33334 566888999999999999999999999987755543 222222222344 23
Q ss_pred EecccccccccccceeeeeccccccccCCcchhHHHHH-HHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHH
Q 045431 272 TSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNR-IVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTD 350 (433)
Q Consensus 272 i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 350 (433)
+++|.+| .|+.+|++++++++. +.+.. ....++.+.++++.+++.+.|+.... +++.+..++.-+
T Consensus 811 --t~gK~lg-~G~Pl~av~~~~~i~--------~~~~~~~~~~sT~~gnP~~~aaala~L~~i~~---e~l~~~~~~~G~ 876 (972)
T PRK06149 811 --TMAKGMG-NGHPLGAVITRREIA--------EALEAEGYFFSSTGGSPVSCRIGMAVLDVLRE---EKLQENARRVGD 876 (972)
T ss_pred --Eeccccc-CCeeeEEEEEcHHHH--------hhhccCCcccCCCCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHH
Confidence 7899998 899999999998874 33321 11223446788898888888763222 234455555556
Q ss_pred HHHHHHhhc----CC-eeecCCCccEEEEECCC------CC---hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe--e
Q 045431 351 IIVETFNSL----GF-KVYGGKNAPYVWVQFPG------RS---SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS--A 414 (433)
Q Consensus 351 ~l~~~l~~~----g~-~~~~~~~g~~~~~~~~~------~~---~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~ 414 (433)
++.+.|+++ ++ ..+. ..|+++-+.+.. .. ...+...++ ++||.+.+.. ...+.+||. +
T Consensus 877 ~l~~~L~~l~~~~~~i~~vr-G~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~-~~Gvl~~~~g----~~~~vl~~~Ppl 950 (972)
T PRK06149 877 HLKARLEALADRHPLIGAVH-GMGLYLGVELVRDRQTLEPATEETAAICDRLL-ELGVIMQPTG----DHLNILKIKPPL 950 (972)
T ss_pred HHHHHHHHHHHhCCCeEEEe-ecceEEEEEEecCcccCCCChHHHHHHHHHHH-hCCeEEeecC----CCCCEEEEECCC
Confidence 666666553 32 2222 246666666631 01 223445555 4599997742 123679988 5
Q ss_pred ccChhHHHHHHHHHHHhhC
Q 045431 415 FGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 415 ~~~~~~l~~~l~~l~~~l~ 433 (433)
..+++++++++++|.++++
T Consensus 951 ~it~~~id~~~~~l~~~l~ 969 (972)
T PRK06149 951 CLDRESADFFVDMLDRVLT 969 (972)
T ss_pred cCCHHHHHHHHHHHHHHHH
Confidence 6799999999999998863
|
|
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-13 Score=123.50 Aligned_cols=349 Identities=14% Similarity=0.111 Sum_probs=218.0
Q ss_pred HHHHHhcCCCCceEEecCCCCC---CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcE
Q 045431 53 KAAHMLKYPDAEVISLGIGDTT---EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDI 129 (433)
Q Consensus 53 ~~~~~~~~~~~~~i~l~~g~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i 129 (433)
+.......+++..+|+-.|-.. -.+.|++.+++.+++.... .....|. ..-..+|-+++++.+ .-+-.-+
T Consensus 40 ~~~ylyDe~G~ryLD~f~Gi~tvslGHchP~v~~a~~kQl~~l~--H~t~~~~-~~pi~~~Ae~L~s~~----P~~l~~v 112 (442)
T KOG1404|consen 40 EGQYLYDEEGRRYLDAFGGIVTVSLGHCHPDVVAAAVKQLKKLY--HTTSGYL-NPPIHDLAEALVSKL----PGDLKVV 112 (442)
T ss_pred ceEEEEcCCCceeehhhCCeEEEEcCCCChHHHHHHHHhhhhhE--Eeecccc-CCcHHHHHHHHHHhC----CCCceEE
Confidence 3333444556667777666532 3578999999999997654 4455663 456788888888886 4455679
Q ss_pred EEcCChHHHHHHH--HHhc-CCCCEEEEeCCCChhhhhhHHHhCCcccccccccccc-eEEEee-cCccCCc--------
Q 045431 130 FVSDGAKCDISRL--QIVF-GSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYG-KIEYMR-CTAENGF-------- 196 (433)
Q Consensus 130 ~~~~G~~~al~~l--~~l~-~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~-~~~~~~~-------- 196 (433)
+++|++++|.++. ++.+ .-.-.++--..+|.+.......+....-|+....... .+.... .++..+.
T Consensus 113 fF~nsGsEANelal~mar~Yt~~~diIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e 192 (442)
T KOG1404|consen 113 FFVNSGSEANELALKMARLYTGNLDIIARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEE 192 (442)
T ss_pred EEecCCchHHHHHHHHHHHhcCCceEEEeeccccCCchhhcccccCCcccccCCCCCCcccccCCCCcccccCCCCchhh
Confidence 9999999999863 2222 2233566677788776544433333333333221110 011110 0110000
Q ss_pred -----ccCCCC-----CCCccEEEEcCC-CCcccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCC
Q 045431 197 -----FPDLST-----VARTDIIFFCSP-NNPTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPG 264 (433)
Q Consensus 197 -----~~~~~~-----~~~~~~i~l~~p-~nPtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 264 (433)
..+++. .+.+-+-++..+ +..-|+ .+++..+++..++|+++|.+.|.||+...|...|....+.+.+-
T Consensus 193 ~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG~~wgfe~h~v 272 (442)
T KOG1404|consen 193 ASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTGHMWGFESHGV 272 (442)
T ss_pred hHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhccccccccccccccCC
Confidence 001111 123344455544 665564 45777999999999999999999999999888775444443333
Q ss_pred CCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHH-hhccCCCcHHHHHHHHHhcCcCChhHHHHHHH
Q 045431 265 AKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIV-CTCFNGASNISQAGGLACLSPEGFKAVHEVIG 343 (433)
Q Consensus 265 ~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~ 343 (433)
.+| |-|++|.+| .|+.+|.++..+++. +.+.+.. ...+.+.++++.+++.+.|+-... +++.+
T Consensus 273 ~PD----IvTmAKgiG-nG~Pl~AVvtt~EIa--------~v~~~~~~~fnTyggnP~a~avg~aVL~Vike---e~LqE 336 (442)
T KOG1404|consen 273 VPD----IVTMAKGIG-NGFPLGAVVTTPEIA--------DVLNQKSSHFNTYGGNPVACAVGLAVLKVIKE---ENLQE 336 (442)
T ss_pred Ccc----HHHHHhhcc-CCCcceeeecCHHHH--------HHHHhccccccccCCCchhHHHHHHHHHHHHH---HhHHH
Confidence 344 558999998 999999999999983 5555444 556677889999988888874433 45555
Q ss_pred HHHHHHHHHHHHHhhc--CCeeecCC--CccEEEEECCCC---------ChHHHHHHHHHcCCeEecCCCCCCCCCCCeE
Q 045431 344 FYKENTDIIVETFNSL--GFKVYGGK--NAPYVWVQFPGR---------SSWDVFSEILEKTHVVTTPGSGFGPGGEGFI 410 (433)
Q Consensus 344 ~~~~~~~~l~~~l~~~--g~~~~~~~--~g~~~~~~~~~~---------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~i 410 (433)
..++.-.++.+.|.++ +.++++.- .|+++-+.+-.. ....++.+-.++.|+.+.-|..++ +.|
T Consensus 337 ~aa~vG~yl~~~l~~l~d~h~iIGdVRG~GLm~GvE~V~dk~~~~pp~~~~~~~i~~~cke~Gvlvg~g~i~G----~vf 412 (442)
T KOG1404|consen 337 NAAEVGSYLLEKLAALKDKHPIIGDVRGRGLMLGVELVSDKSEPKPPATAEGAVIGEQCKELGVLVGKGGIHG----NVF 412 (442)
T ss_pred HHHHHHHHHHHHHHHHhhcCCceeecccceeEEEEEEecccCCCCCcchHHHHHHHHHHHHhCeeeecccccc----eEE
Confidence 5556666777776665 34443322 345555554311 112344455567799997776654 389
Q ss_pred EEe--eccChhHHHHHHHHH
Q 045431 411 RVS--AFGHRGNVLEACKRF 428 (433)
Q Consensus 411 Ri~--~~~~~~~l~~~l~~l 428 (433)
||+ ++.+.+|++.+++..
T Consensus 413 riaPPlciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 413 RIAPPLCITKEDIDFAVEYF 432 (442)
T ss_pred EecCCeeccHHHHHHHHHHH
Confidence 999 678999998777744
|
|
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.6e-13 Score=127.40 Aligned_cols=318 Identities=12% Similarity=0.058 Sum_probs=196.2
Q ss_pred ChHHHHHHHHHHHh-hcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcE--EEcCChHHHHHH-HHHhc--CCCC
Q 045431 77 IPEVITSALAKRSY-ALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDI--FVSDGAKCDISR-LQIVF--GSNV 150 (433)
Q Consensus 77 ~~~~~~~a~~~~~~-~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i--~~~~G~~~al~~-l~~l~--~~gd 150 (433)
......+++.+.+. ..++....+.| .....++.+.+.+|+.+.++++++++ ++|+|+|++... +...- .+++
T Consensus 35 ~~~~~~~~~~~~~~~~~gnP~s~~~~--g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~ 112 (374)
T PLN03032 35 FDYGELSQLMKYSINNLGDPFIESNY--GVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREVFPDG 112 (374)
T ss_pred cChHHHHHHHHhcccCCCCCcccCCC--CccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHhCCCc
Confidence 33345666666654 33332222233 23457777777777777678888887 999999999875 43221 3456
Q ss_pred EEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC-----CCCccEEEEcCCCCccccCCCH
Q 045431 151 TMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST-----VARTDIIFFCSPNNPTGAAATR 224 (433)
Q Consensus 151 ~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~i~l~~p~nPtG~~~~~ 224 (433)
.|++..-.|+++...++.+|. .+..+|++.++..+.+ +++ ..++.+++++..+|+||.+-|
T Consensus 113 ~vi~s~~~H~Sv~kaa~~lg~------------~~~~V~~d~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idp- 179 (374)
T PLN03032 113 ILYASRESHYSVFKAARMYRM------------EAVKVPTLPSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDD- 179 (374)
T ss_pred EEEeCCCceeHHHHHHHHcCC------------CCeEeeeCCCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCC-
Confidence 899999999999999888883 5667788765544333 221 124667777788999999877
Q ss_pred HHHHHHHHHHHHcC-----CEEEEecccccccc--CCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccc
Q 045431 225 EQLTRLVQFAKDNG-----SIIVYDSAYALYIS--DDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLF 297 (433)
Q Consensus 225 ~~~~~i~~~a~~~~-----~~li~De~~~~~~~--~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~ 297 (433)
+++|.++|++|| +++.+|.+++.+.. ... .+...+. ..-..+.-|.+|.++ ....+|.++.++..+.
T Consensus 180 --i~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~-~~~~~~~--~~vDSis~s~HK~~g-~P~g~G~ll~r~~~~~ 253 (374)
T PLN03032 180 --LDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSR-APEVTFR--KPIGSVSVSGHKFLG-CPMPCGVALTRKKHVK 253 (374)
T ss_pred --HHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCC-CcccCCC--cCCcEEEECcccccC-CCcCeEEEEEEchhhH
Confidence 778888888996 58999999986322 111 0111111 112245668899887 4556899998876641
Q ss_pred cCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECC
Q 045431 298 SDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFP 377 (433)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~ 377 (433)
. .....+-+.........+-+......+...|...+.+.+.++.++.-+..+++.+.|++.++.....+..+.+.++-+
T Consensus 254 ~-~~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~p~~~~V~f~~~ 332 (374)
T PLN03032 254 A-LSQNVEYLNSRDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEAGLTCRLNELSSTVVFERP 332 (374)
T ss_pred h-hccCCcccCCCCCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEECCCceEEEEcCC
Confidence 1 000000000000001111122233334455555566777888899999999999999998887654445555555554
Q ss_pred CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc--ChhHHHHHHHHHHHh
Q 045431 378 GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG--HRGNVLEACKRFKHL 431 (433)
Q Consensus 378 ~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~--~~~~l~~~l~~l~~~ 431 (433)
. ... + .+ |..+.+- ++.+|++++. +.+.+++.++.|++.
T Consensus 333 ~--~~~----~-~~-~w~l~~~-------~~~~hi~vm~~~~~~~id~fi~dl~~~ 373 (374)
T PLN03032 333 M--DEA----F-IK-KWQLACE-------GDIAHVVVMPNVTVEKLDEFVEELVEV 373 (374)
T ss_pred C--cHh----H-hh-eeeeccc-------CCEEEEEECCCCCHHHHHHHHHHHhcc
Confidence 2 111 2 22 5555431 2479998643 678899999988753
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.3e-13 Score=131.15 Aligned_cols=312 Identities=14% Similarity=0.150 Sum_probs=178.5
Q ss_pred CChHHHHHHHHHHHhhcccCCCCCCCCC-----CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHHHHhcCCCC
Q 045431 76 PIPEVITSALAKRSYALSTQEGYSGYGA-----EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQIVFGSNV 150 (433)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~Y~~-----~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l~~l~~~gd 150 (433)
+.|+.+.+++.+.+..+.+. .|.- ..-...+++.+++++ +. +..++++++++++.++...+.+||
T Consensus 97 ~l~~~v~eav~~~~~~~~~l----e~~l~~g~~g~r~~~~e~~lA~l~----Ga--e~a~vv~sgtaAl~l~l~~l~~Gd 166 (464)
T PRK04311 97 LLSEAAIEAVTEAARGYSNL----EYDLATGKRGSRDRALAALLCALT----GA--EDALVVNNNAAAVLLALNALAAGK 166 (464)
T ss_pred CCCHHHHHHHHHHHhccccc----ccchhhcccchHHHHHHHHHHHHh----CC--CeEEEECCHHHHHHHHHHHhCCCC
Confidence 47889999999988654321 1211 112357888888876 54 356777777789887556679999
Q ss_pred EEEEeCCCChhh------hhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC--CCCccEEEEcCCCCc--cc-
Q 045431 151 TMAVQDPSYPAY------VDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST--VARTDIIFFCSPNNP--TG- 219 (433)
Q Consensus 151 ~Vl~~~p~~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~p~nP--tG- 219 (433)
+|++.+..+..+ .......| ..++.++..... ...+++. .+++++|++++++|| +|
T Consensus 167 eVIvs~~e~~~~ggs~~i~~~~~~~G------------~~l~~v~~~~~t-~~~dle~aI~~~TklV~~vh~sN~~i~G~ 233 (464)
T PRK04311 167 EVIVSRGELVEIGGAFRIPDVMRQAG------------ARLVEVGTTNRT-HLRDYEQAINENTALLLKVHTSNYRIEGF 233 (464)
T ss_pred EEEEcchhhhhcCcchhhHHHHHHCC------------cEEEEECCCCCC-CHHHHHHhcCccCeEEEEEcCCCcccccc
Confidence 999988755421 22344455 366666653221 1122222 367899999999998 34
Q ss_pred -cCCCHHHHHHHHHHHHHcCCEEEEeccccccc----cC-CCCCcccccCCCCcceEEEecccccccccccceeeeeccc
Q 045431 220 -AAATREQLTRLVQFAKDNGSIIVYDSAYALYI----SD-DNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPK 293 (433)
Q Consensus 220 -~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~----~~-~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~ 293 (433)
...+ +++|+++|++||+++|+|...+.+. +. ...+.+...-. .+..+++.|.+|++| |...|++++++
T Consensus 234 ~~~~d---l~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~-~GaDiv~fSg~K~Lg--Gp~~G~i~g~~ 307 (464)
T PRK04311 234 TKEVS---LAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLA-AGVDLVTFSGDKLLG--GPQAGIIVGKK 307 (464)
T ss_pred CCcCC---HHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHh-cCCcEEEecCccccc--CCceEEEEEcH
Confidence 3445 8999999999999999999644321 10 00111222111 123488999999986 33589999988
Q ss_pred cccccCCcchhHHHHHHHhhccCCCcHHH---HHHHHHhcCcCC--------hhHHHHHHHHHHHHHHHHHHHHhhc---
Q 045431 294 ELLFSDGFPVAKDFNRIVCTCFNGASNIS---QAGGLACLSPEG--------FKAVHEVIGFYKENTDIIVETFNSL--- 359 (433)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---q~~~~~~l~~~~--------~~~~~~~~~~~~~~~~~l~~~l~~~--- 359 (433)
+++ +.+............... ..+++..+.+.. .+.+....++.+++.+.+.+.|+.+
T Consensus 308 ~li--------~~l~~~~~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~~~ 379 (464)
T PRK04311 308 ELI--------ARLKKHPLKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAALGA 379 (464)
T ss_pred HHH--------HHHhhchhHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhccCC
Confidence 875 333311111111111111 122222111111 1223344466777888888888775
Q ss_pred C--CeeecC----CCc-------cEEEEECC--CCChHHHHHHHHHcCC--eEecCCCCCCCCCCCeEEEee-ccChhHH
Q 045431 360 G--FKVYGG----KNA-------PYVWVQFP--GRSSWDVFSEILEKTH--VVTTPGSGFGPGGEGFIRVSA-FGHRGNV 421 (433)
Q Consensus 360 g--~~~~~~----~~g-------~~~~~~~~--~~~~~~~~~~l~~~~g--i~v~~g~~f~~~~~~~iRi~~-~~~~~~l 421 (433)
+ +.+... .+| +-..+.+. +....++. ..+++.. |..+ ..++.+.+.+ +..++|+
T Consensus 380 ~~~~~~~~~~~~~gggs~p~~~~~~~~v~~~~~~~~~~~l~-~~lr~~~~~i~~r-------~~~~~~~ld~r~~~~~~~ 451 (464)
T PRK04311 380 AFAVEVVPSFSQVGGGSLPVDRLPSAAVTLTPKDRSLEALA-ARLRLLPPPVIGR-------IEDGRLLLDLRTLEEEDE 451 (464)
T ss_pred CeeEEEEEccCccCCCCCcCCCCCeEEEEEeCCCCCHHHHH-HHHhcCCCCEEEE-------EECCEEEEEeCcCCHHHH
Confidence 2 233321 011 12333333 33444444 4455533 3333 2356777886 4488999
Q ss_pred HHHHHHHHHhh
Q 045431 422 LEACKRFKHLY 432 (433)
Q Consensus 422 ~~~l~~l~~~l 432 (433)
+..+++|++++
T Consensus 452 ~~~~~~~~~~~ 462 (464)
T PRK04311 452 ERLAAALLEAL 462 (464)
T ss_pred HHHHHHHHHHh
Confidence 99999998875
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.2e-14 Score=131.91 Aligned_cols=343 Identities=15% Similarity=0.156 Sum_probs=183.3
Q ss_pred eEEecCCCCCCCChHHHHHHHHHHHhhcccCCCC---CCCCCCCCCHHHHHHHHHHHhccCCCCC----CcEEEcCChHH
Q 045431 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGY---SGYGAEQGEKPLRAAIASTFYKDLGIEE----GDIFVSDGAKC 137 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~Y~~~~g~~~lr~~la~~l~~~~~~~~----~~i~~~~G~~~ 137 (433)
.|+|--.++ ..++.+.+++...+..... .+. .-|+-..-..++.+...+...+.+++++ -+|-..||+.+
T Consensus 22 ~l~LiaSEN--~~Sp~v~~al~S~l~nkya-eg~pg~ryy~G~~~id~iE~la~~ra~~lF~~~~~~w~anvqp~SGs~A 98 (399)
T PF00464_consen 22 TLNLIASEN--YMSPAVREALGSDLTNKYA-EGYPGKRYYGGCEYIDEIEELAIERAKELFGAEPKEWYANVQPHSGSQA 98 (399)
T ss_dssp SEE-CTT-------HHHHHHHTSGGGGS-T-TEETTEESSSSTHHHHHHHHHHHHHHHHHHT-STTTEEEE---SSHHHH
T ss_pred CccccCccc--ccCHHHHHHhCCcceeecc-ccCCCcccccCcchhhHHHHHHHHHHHHHhCCCcccceEEeecCCchHH
Confidence 578776665 3566777777666653221 111 1222222233444333344344557763 46777788887
Q ss_pred HHHHHHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC------CCCccEEEE
Q 045431 138 DISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST------VARTDIIFF 211 (433)
Q Consensus 138 al~~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~l 211 (433)
.+.++.++++|||+|+..++.+.++...-.....+.+ .....+.+.+.++++++. ...|+++ ..+|++|++
T Consensus 99 n~av~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~--~~~~~~~~~~~y~~d~~~-~~ID~d~l~~~a~~~kPklIi~ 175 (399)
T PF00464_consen 99 NLAVYMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKI--SASGLYFESVPYPVDPDT-GLIDYDELEKLAKEHKPKLIIC 175 (399)
T ss_dssp HHHHHHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBS--SHHHHHSEEEEEEB-TTT-SSB-HHHHHHHHHHH--SEEEE
T ss_pred HHHHHHHHHhhcCcEEecChhhccccccccccccccc--ccccceEEEEeeeeecCC-CeECHHHHHHHHhhcCCCEEEE
Confidence 7777899999999999998888765432211111000 001112477788887543 3444433 258998887
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccc-cccCCC-CCcccccCCCCcceEEEecccccccccccceeee
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYAL-YISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWT 289 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~-~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l 289 (433)
-.-.+|- .-+.+++.++|.+.|.+|+.|-+|.. +...+. +.|+.. . .|+.+|.+|+| +|-|-|.+
T Consensus 176 G~S~y~~-----~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~~-A-----Dvvt~sThKtl--~GPrggiI 242 (399)
T PF00464_consen 176 GASSYPR-----PIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFPY-A-----DVVTGSTHKTL--RGPRGGII 242 (399)
T ss_dssp E-SSTSS--------HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCCT-S-----SEEEEESSGGG---SSS-EEE
T ss_pred CchhccC-----ccCHHHHHHHHHhcCcEEEecccccccceehheecCcccc-c-----eEEEeeccccc--cccCceEE
Confidence 4333433 23478889999999999999999864 555554 444422 1 28889999998 89999999
Q ss_pred eccccccccC------CcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcC-ChhHHHHHHHHHHHHHHHHHHHHhhcCCe
Q 045431 290 VIPKELLFSD------GFPVAKDFNRIVCTCFNGASNISQAGGLACLSPE-GFKAVHEVIGFYKENTDIIVETFNSLGFK 362 (433)
Q Consensus 290 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 362 (433)
++++.....+ ...+.+.+.+.......+.+.....++.+.-..+ .....++..+++-++.+.|.+.|.+.|+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~La~~L~~~G~~ 322 (399)
T PF00464_consen 243 LTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKALAEALQERGFK 322 (399)
T ss_dssp EES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT-E
T ss_pred EEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhCCcE
Confidence 9982111000 1122456665444444444455554444332212 12345788888999999999999999999
Q ss_pred eec-CCCccEEEEECCC-CChHHHHHHHHHcCCeEec----CCCCCCCCCCCeEEEee------ccChhHHHHHHHH
Q 045431 363 VYG-GKNAPYVWVQFPG-RSSWDVFSEILEKTHVVTT----PGSGFGPGGEGFIRVSA------FGHRGNVLEACKR 427 (433)
Q Consensus 363 ~~~-~~~g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~----~g~~f~~~~~~~iRi~~------~~~~~~l~~~l~~ 427 (433)
+.. ......+|+++.. ..+...+...+++.||.+. |++ -.+.....+||+. ...++++++..+-
T Consensus 323 v~~ggTd~H~vlvd~~~~~~~g~~a~~~Le~~gI~vnkn~iP~d-~~~~~~sGlRlGT~~lT~rG~~e~dm~~iA~~ 398 (399)
T PF00464_consen 323 VVTGGTDNHQVLVDLRSFGIDGKEAEKALEEAGIIVNKNTIPGD-RSPFVPSGLRLGTPALTRRGMKEEDMKEIAEL 398 (399)
T ss_dssp EGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-EEE--TTT-STTTT-SEEEEESHHHHHTT--HHHHHHHHHH
T ss_pred EEECCCCCCeEEEEecccccchHHHHHHHHhcCeeecccccCCC-CCCCCCCEEEECCHHHHhCCCCHHHHHHHHhh
Confidence 874 3445678999863 2244556677788899985 333 1122246799994 1257777766543
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.9e-13 Score=130.28 Aligned_cols=218 Identities=15% Similarity=0.119 Sum_probs=134.0
Q ss_pred CCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhh----HHHhCCcccccccc
Q 045431 105 QGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDS----SVIMGQTGEFQKDA 179 (433)
Q Consensus 105 ~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~----~~~~g~~~~~~~~~ 179 (433)
+-...+++.++++. +. .+.|++++|+ +++.+ +..++++||+|+++...|.+.... +...|
T Consensus 69 pt~~~le~~la~l~----g~-~~~v~fsSG~-~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~G--------- 133 (437)
T PRK05613 69 PTVEALENRIASLE----GG-VHAVAFASGQ-AAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLG--------- 133 (437)
T ss_pred hHHHHHHHHHHHHh----CC-CeEEEeCCHH-HHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHhcC---------
Confidence 34577888888876 54 4667777777 55554 677889999999999999887432 23445
Q ss_pred cccceEEEeecCccCCcccCCCC--CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCC
Q 045431 180 EKYGKIEYMRCTAENGFFPDLST--VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPR 257 (433)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~ 257 (433)
+++..++ ++. + ..+++. .+++++|++.+|.||+|.+.+ +++|.++|+++|+++|+|.+++.... ..
T Consensus 134 ---i~v~~vd-~~~-d-~e~l~~~l~~~tk~V~~e~~~Np~~~v~d---i~~I~~la~~~gi~livD~t~a~g~~---~~ 201 (437)
T PRK05613 134 ---IEVTFVE-NPD-D-PESWQAAVQPNTKAFFGETFANPQADVLD---IPAVAEVAHRNQVPLIVDNTIATAAL---VR 201 (437)
T ss_pred ---eEEEEEC-CCC-C-HHHHHHhCCccCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCeEEEECCCccccc---cC
Confidence 3677765 221 1 111221 357888888899999998888 88888999999999999999874211 11
Q ss_pred cccccCCCCcceEEEecccccccccccceeeeec-cccccccC-------------------------Ccc--hh-HHHH
Q 045431 258 SIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVI-PKELLFSD-------------------------GFP--VA-KDFN 308 (433)
Q Consensus 258 ~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~-~~~~~~~~-------------------------~~~--~~-~~~~ 308 (433)
++ .+ +..+++.|++|.++-.|--+|.+++ +....... ..+ +. +...
T Consensus 202 p~-~~----GaDivv~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (437)
T PRK05613 202 PL-EL----GADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLGAPAFGLKARA 276 (437)
T ss_pred hH-Hh----CCCEEEeeccceecCCCcceeEEEEecCcccccccccccccCCCCCCCccccccccccccchHHHHHHHHH
Confidence 11 22 1248899999998744544554444 32210000 000 00 0011
Q ss_pred HHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc
Q 045431 309 RIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 309 ~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 359 (433)
..........++.....+. .+.+.+..+.++..++...+.+.|+++
T Consensus 277 ~~~~~~G~~~~p~~a~l~~-----rgl~TL~lR~~~~~~nA~~lA~~L~~h 322 (437)
T PRK05613 277 GLLRDTGATLSPFNAWVTA-----QGLDTLSLRLERHNENAIKVAEFLNNH 322 (437)
T ss_pred HHHHhcCCCCCHHHHHHHH-----cccCcHHHHHHHHHHHHHHHHHHHHcC
Confidence 1122222223333332222 334456777778889999999999987
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-12 Score=123.62 Aligned_cols=333 Identities=12% Similarity=0.099 Sum_probs=200.1
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhccc-CCCCCCCCC-CCCCHHHHHHHHHHHhccCCCCCC-c-EEEcCChHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALST-QEGYSGYGA-EQGEKPLRAAIASTFYKDLGIEEG-D-IFVSDGAKCDI 139 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~Y~~-~~g~~~lr~~la~~l~~~~~~~~~-~-i~~~~G~~~al 139 (433)
..++|+-|. ...|+.|++++.+.+.++.. ..+....++ ..-..++-+.+.+.|.+-++++.+ + +++..|++.++
T Consensus 7 ~~~~f~pGP--~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ 84 (365)
T PLN02452 7 RVFNFSAGP--ATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNYEVLFLQGGASTQF 84 (365)
T ss_pred ceEeeeCCC--CCCCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHHHH
Confidence 357777764 46899999999987654321 011111211 233344444454555444465322 3 45667888889
Q ss_pred HH-HHHhcCCCCEEEEeCCCChhh--hhhHHHhCCcccccccccccceEEEeecCccCCcccC---CCCCCCccEEEEcC
Q 045431 140 SR-LQIVFGSNVTMAVQDPSYPAY--VDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD---LSTVARTDIIFFCS 213 (433)
Q Consensus 140 ~~-l~~l~~~gd~Vl~~~p~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~l~~ 213 (433)
.+ +..++.+|+++++...+.++- ...++.+|.. .++.........-.++ ++..++++.+.+|+
T Consensus 85 ea~~~nl~~~~~~~l~~~~G~fg~r~~~~a~~~g~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h 153 (365)
T PLN02452 85 AAIPLNLCKPGDKADFVVTGSWSKKAAKEAKKYCKT-----------NVIASGKDEKYTKIPSVSEWELTPDAKFVHICA 153 (365)
T ss_pred HHHHHhcCCCCCeEEEEECCHHHHHHHHHHHHhCCC-----------cEEEecCCCCCCCCCChHHcCCCCCCcEEEECC
Confidence 97 588899999999888877763 3444555531 1111111100000122 23335788888888
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccc
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPK 293 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~ 293 (433)
....||+.+++ ++++. ++++|+|.+.+.. ..+.++..+ + +.+.|..|.+|.+| +|++++++
T Consensus 154 nETstGv~~~~--~~~i~------~~~lvVDa~Ss~g---~~pidv~~~----~--v~~~saqK~lGP~G--l~~v~vr~ 214 (365)
T PLN02452 154 NETIHGVEFKD--YPDVG------NVPLVADMSSNFL---SKPVDVSKY----G--VIYAGAQKNVGPSG--VTIVIIRK 214 (365)
T ss_pred CCCCCcEecCc--ccccC------CCeEEEECCcccc---CcccCHHHc----C--EEEEecccccCCCC--eEEEEEcH
Confidence 88899996432 44443 3899999988732 224444333 2 23468899999888 79999999
Q ss_pred cccccCCcc--hhHHHHHHH--hhccCCCcHHHHHHHHHhcCcCChh-HHHHHHHHHHHHHHHHHHHHhhc-CCeee--c
Q 045431 294 ELLFSDGFP--VAKDFNRIV--CTCFNGASNISQAGGLACLSPEGFK-AVHEVIGFYKENTDIIVETFNSL-GFKVY--G 365 (433)
Q Consensus 294 ~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~-g~~~~--~ 365 (433)
+.+.+.... ..-++.... ....++++.....++.++++-...+ .++.+.++.+++++++++.|++. |+... .
T Consensus 215 ~~l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~y~~~~~ 294 (365)
T PLN02452 215 DLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGFYVCPVE 294 (365)
T ss_pred HHHhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCC
Confidence 887431111 011111111 1122344555555444444421112 36899999999999999999986 76211 1
Q ss_pred C--CCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc--ChhHHHHHHHHHHHhh
Q 045431 366 G--KNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG--HRGNVLEACKRFKHLY 432 (433)
Q Consensus 366 ~--~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~--~~~~l~~~l~~l~~~l 432 (433)
+ .+.+.+.+.+++....+.+.+.++++|+...+|..- -+.+|+|.++ +.++++.+++.|+++-
T Consensus 295 ~~~rs~~~vsF~~~~~~~~~~f~~~~~~~g~~~~~G~r~----~gg~R~s~yna~~~~~v~~L~~~m~~f~ 361 (365)
T PLN02452 295 KSVRSLMNVPFTLGGSELEAEFVKEAAKAGMVQLKGHRS----VGGMRASIYNAMPLAGVEKLVAFMKDFQ 361 (365)
T ss_pred hHHhCCeEEEEEcCCchhHHHHHHHHHHCCCcccCCccc----cCceEEECcCCCCHHHHHHHHHHHHHHH
Confidence 1 245567778775444445555566779999998752 2239999754 8999999999998863
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-12 Score=124.27 Aligned_cols=298 Identities=13% Similarity=0.118 Sum_probs=181.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHH-HHhcCCCCEEEEeCCCChhhhhh-HHHhCCccccc
Q 045431 99 SGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRL-QIVFGSNVTMAVQDPSYPAYVDS-SVIMGQTGEFQ 176 (433)
Q Consensus 99 ~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l-~~l~~~gd~Vl~~~p~~~~~~~~-~~~~g~~~~~~ 176 (433)
..|+.+....+|.+++++++ |. +.++.+++++.++.++ ...++|||.| +..+|...... +...|.
T Consensus 72 d~Yagd~s~~~LE~~vAe~l----G~--e~aV~v~sGTaAl~ll~~l~v~pGd~V--p~n~~f~Tt~ahI~~~Ga----- 138 (460)
T PRK13237 72 EAYAGSRNFYHLEETVQEYY----GF--KHVVPTHQGRGAENLLSRIAIKPGQYV--PGNMYFTTTRYHQELNGG----- 138 (460)
T ss_pred hhhcCCCcHHHHHHHHHHHH----CC--CeEEEeCCHHHHHHHHHHhCCCCcCEE--CCccchHhhHHHHHhCCc-----
Confidence 45877888999999999997 54 4689998999888875 4457999965 55545443333 555553
Q ss_pred ccccccceEEEeec-----------Ccc-CCcccC-CCC------CCCccEEEEcCCCCcc-ccCCCHHHHHHHHHHHHH
Q 045431 177 KDAEKYGKIEYMRC-----------TAE-NGFFPD-LST------VARTDIIFFCSPNNPT-GAAATREQLTRLVQFAKD 236 (433)
Q Consensus 177 ~~~~~~~~~~~~~~-----------~~~-~~~~~~-~~~------~~~~~~i~l~~p~nPt-G~~~~~~~~~~i~~~a~~ 236 (433)
+++.+ ++. +.++++ +++ .+++.++.+.+++|.. |++.|.+++++|.++|++
T Consensus 139 ---------~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~ 209 (460)
T PRK13237 139 ---------IFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDK 209 (460)
T ss_pred ---------EEEeeecccccccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHH
Confidence 12211 111 122221 111 1345567777888888 799999999999999999
Q ss_pred cCCEEEEecccccccc-------CC-CCCccc----ccCCCCcceEEEecccccccccccceeeeeccccccccCCcchh
Q 045431 237 NGSIIVYDSAYALYIS-------DD-NPRSIF----EIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVA 304 (433)
Q Consensus 237 ~~~~li~De~~~~~~~-------~~-~~~~~~----~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~ 304 (433)
||+.||+|.++..-.. .+ ...++. ++....| +...|++|.++.+ . -|+++++++.+ .
T Consensus 210 ~Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD--~~t~S~~K~~~~~-~-GG~i~t~D~eL-------~ 278 (460)
T PRK13237 210 HGIKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYAD--GCTMSGKKDCLVN-I-GGFLAMNDEEL-------F 278 (460)
T ss_pred cCCEEEEECcchhcChhhhcccccccCCCcHhHHhhhccCcCc--EEEEeCCCCCCCC-C-ceEEEECCHHH-------H
Confidence 9999999999873210 11 022322 1111122 6667899988644 1 38888877665 3
Q ss_pred HHHHHHHhh----ccC-CCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECC--
Q 045431 305 KDFNRIVCT----CFN-GASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFP-- 377 (433)
Q Consensus 305 ~~~~~~~~~----~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~-- 377 (433)
++++..... .+. +.+.--..+....+.+... ....++--...++|.+.|.+.|+.+..|.+|..++++..
T Consensus 279 ~~~r~~~~~~eG~~tygg~~grd~~alAvgl~E~~~---~~y~~~ri~~~~~l~~~L~~~Gvpv~~p~ggH~v~vda~~~ 355 (460)
T PRK13237 279 DEAKELVVVYEGMPSYGGMAGRDMEAMAIGIEESVQ---YEYIEHRVGQVRYLGEKLLAAGVPIVEPVGGHAVFLDARRF 355 (460)
T ss_pred HHHHHhccccCCCcCCCChhhhHHHHHHhHHHhhch---HHHHHHHHHHHHHHHHHHHHCCCceecCCCceEEEEEhHHh
Confidence 455443211 111 2222122222222332111 122233334567888999999999999889988888643
Q ss_pred --C-----CChHHHHHHHHHcCCeEecC-CCC-CC--CCC-------CCeEEEeec---cChhHHHHHHHHHHHhh
Q 045431 378 --G-----RSSWDVFSEILEKTHVVTTP-GSG-FG--PGG-------EGFIRVSAF---GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 378 --~-----~~~~~~~~~l~~~~gi~v~~-g~~-f~--~~~-------~~~iRi~~~---~~~~~l~~~l~~l~~~l 432 (433)
+ .....+..+|..+.||.-.- |+. ++ +.+ -..+|+++- -|.+.++-..++|..+.
T Consensus 356 lph~~~~~~p~~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~ 431 (460)
T PRK13237 356 LPHLPQDQFPAQALAAELYIESGVRSMERGIVSAGRDPKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLY 431 (460)
T ss_pred CCCCCcccChHHHHHHHHHHHhCcCeEeecceecccCCCCCccCCCccceeeeccccccccHHHHHHHHHHHHHHH
Confidence 2 24566777887787886531 222 11 111 257999962 37888888888887653
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.6e-12 Score=119.78 Aligned_cols=304 Identities=18% Similarity=0.183 Sum_probs=184.9
Q ss_pred hHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHh-cCCCCEEEEe
Q 045431 78 PEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIV-FGSNVTMAVQ 155 (433)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l-~~~gd~Vl~~ 155 (433)
-....+++.+.+.. ..+.. ++ -..++.+++++|+ | ....+.+++++.|+.+ +.++ +.|||.|+++
T Consensus 14 ~~~e~~~v~~vl~s----g~i~~-G~--~v~~FE~~~ae~~----G--~k~ava~~sgT~AL~laL~al~ig~GDeVI~p 80 (374)
T COG0399 14 GEEELAAVQEVLKS----GWLTG-GP--FVRRFEQAFAEYL----G--VKYAVAVSSGTAALHLALLALAIGPGDEVIVP 80 (374)
T ss_pred chHHHHHHHHHHHc----CCeec-Ch--HHHHHHHHHHHHh----C--CCeEEEecChHHHHHHHHHhcCCCCCCEEEec
Confidence 35666777777763 33322 33 5689999999997 5 4577888888888887 5433 6999999999
Q ss_pred CCCChhhhhhHHHhCCcccccccccccceEEEeecCccC-CcccC-CCC--CCCccEEEEcCCCCccccCCCHHHHHHHH
Q 045431 156 DPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAEN-GFFPD-LST--VARTDIIFFCSPNNPTGAAATREQLTRLV 231 (433)
Q Consensus 156 ~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~--~~~~~~i~l~~p~nPtG~~~~~~~~~~i~ 231 (433)
+-+|......+...| ++++++++|++. +++++ +++ ++++|+|+.. +-.|...+ +.+|.
T Consensus 81 s~TfvATan~i~~~G------------a~PVFvDid~~T~nid~~~ie~aIt~~tKAIipV---hl~G~~~d---m~~i~ 142 (374)
T COG0399 81 SFTFVATANAVLLVG------------AKPVFVDIDPDTLNIDPDLIEAAITPRTKAIIPV---HLAGQPCD---MDAIM 142 (374)
T ss_pred CCchHHHHHHHHHcC------------CeEEEEecCCcccCCCHHHHHHHcccCCeEEEEe---hhccCCCC---HHHHH
Confidence 999999999999999 588899998652 23322 222 4679998854 34677665 88888
Q ss_pred HHHHHcCCEEEEeccccc-cccCCCCCcccccCCCCcceEEEecc--cccccccccceeeeeccccccccCCcchhHHHH
Q 045431 232 QFAKDNGSIIVYDSAYAL-YISDDNPRSIFEIPGAKEVAIETSSF--SKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFN 308 (433)
Q Consensus 232 ~~a~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~~~vi~i~S~--sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~ 308 (433)
++|++||++||+|.+++. ..+.+. ..-++ .+ +-+.|| .|.+. .| --|.++.+++.+ .++++
T Consensus 143 ~la~~~~l~vIEDaAqa~Ga~y~gk--~vGt~---Gd--~~~fSF~~~K~it-tg-EGGav~tnd~el-------a~k~~ 206 (374)
T COG0399 143 ALAKRHGLPVIEDAAQAHGATYKGK--KVGSF---GD--IGAFSFHATKNLT-TG-EGGAVVTNDEEL-------AEKAR 206 (374)
T ss_pred HHHHHcCCeEEEEcchhccCeecCc--ccccc---cc--eEEEEecCCCCcc-cc-CceEEEeCCHHH-------HHHHH
Confidence 899999999999999985 223332 22233 22 555666 68887 55 458888887765 33333
Q ss_pred HHHhhcc----------------CCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCC-Cc-
Q 045431 309 RIVCTCF----------------NGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGK-NA- 369 (433)
Q Consensus 309 ~~~~~~~----------------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~-~g- 369 (433)
.++.... ...+-+.+ ++-.. ..+.++++.++-++..+...+.|+++ ++.+.... +.
T Consensus 207 ~lr~hG~~~~~~~~y~~~~~G~N~rm~~iqA--Aigl~---QL~~l~~~~~~R~~~a~~Y~~~l~~~~~~~~p~~~~~~~ 281 (374)
T COG0399 207 SLRNHGLSRDAVFKYLHEELGYNYRLTEIQA--AIGLA---QLERLDEINERRREIAQIYAEALKGLPGITLPPEPDGAV 281 (374)
T ss_pred HHHHhCcCCCccccceeeecccccCHHHHHH--HHHHH---HHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCce
Confidence 3322211 11111211 12111 12334555555556666677777776 34433222 22
Q ss_pred --cE-EEEECCCC-ChHHHHHHHHHcCCeE----ecCCCCC--------CC--C-------CCCeEEEee--ccChhHHH
Q 045431 370 --PY-VWVQFPGR-SSWDVFSEILEKTHVV----TTPGSGF--------GP--G-------GEGFIRVSA--FGHRGNVL 422 (433)
Q Consensus 370 --~~-~~~~~~~~-~~~~~~~~l~~~~gi~----v~~g~~f--------~~--~-------~~~~iRi~~--~~~~~~l~ 422 (433)
.+ ..+.++.. ...+.+...+++.||. ..|-... .+ . ....+.|-+ ..++++++
T Consensus 282 ~~~~~~~i~~~~~~~~R~~l~~~L~~~gi~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP~~p~l~~~~~~ 361 (374)
T COG0399 282 HAWHLYTILVDEEGISRDALMESLKEAGVGAVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVD 361 (374)
T ss_pred eeeeeeEEEecCCCCCHHHHHHHHHhCCCCceEEeeccccchhhhcccccccCCCchHHHHhhCeEEccCCCCCCHHHHH
Confidence 22 22344432 3444555556666544 4442221 00 0 023466654 34899999
Q ss_pred HHHHHHHHhhC
Q 045431 423 EACKRFKHLYK 433 (433)
Q Consensus 423 ~~l~~l~~~l~ 433 (433)
+.++.|+++++
T Consensus 362 ~V~~~l~~~~~ 372 (374)
T COG0399 362 RVIEALKEVLG 372 (374)
T ss_pred HHHHHHHHHhc
Confidence 99999998763
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.9e-13 Score=134.13 Aligned_cols=186 Identities=13% Similarity=0.101 Sum_probs=114.4
Q ss_pred CCCCCCCCCH-HHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhh-HHHhCCcccc
Q 045431 99 SGYGAEQGEK-PLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDS-SVIMGQTGEF 175 (433)
Q Consensus 99 ~~Y~~~~g~~-~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~-~~~~g~~~~~ 175 (433)
.+...+.|.. +-.+.+|+.+ |++ .--++++|++.++.+ +.+++.+||.|+++.+||.++.+. +.+.|..+++
T Consensus 167 ddL~~~eG~i~eAq~~AA~~f----gAd-~tyFlvNGTS~gn~a~i~a~~~~Gd~VLvdRN~HKSv~hgaLiLsGa~PVY 241 (720)
T PRK13578 167 GDLLIHEGAAKDAQKHAAKVF----NAD-KTYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHHGALIQAGATPVY 241 (720)
T ss_pred CCCCCCChHHHHHHHHHHHHh----CCC-ceEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHHcCCeEEE
Confidence 3333444544 4444444443 544 567899999999986 788999999999999999999885 8889976554
Q ss_pred ccccc-ccceEEEeecCc--cCCcccCCCCC--------CCccEEEEcCCCCccccCCCHHHHHHHHHH-HHHcCCEEEE
Q 045431 176 QKDAE-KYGKIEYMRCTA--ENGFFPDLSTV--------ARTDIIFFCSPNNPTGAAATREQLTRLVQF-AKDNGSIIVY 243 (433)
Q Consensus 176 ~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~--------~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~-a~~~~~~li~ 243 (433)
..... .+.-+-.++... ...+...+.+. .+.++++|++|++ -|++++ +++|++. ++.++ +|++
T Consensus 242 l~P~~n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY-dG~~yd---i~~I~~~~~h~~~-~llv 316 (720)
T PRK13578 242 LETARNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTY-DGTIYN---ARQVVDKIGHLCD-YILF 316 (720)
T ss_pred eeccccccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCC-cceeec---HHHHHHHhhccCC-cEEE
Confidence 32221 000000011000 00000001111 2258999999866 899999 6778777 57777 9999
Q ss_pred eccccc-cccCCC----CCcccccCCCCcceEEEecccccccccccce-eeeecccccc
Q 045431 244 DSAYAL-YISDDN----PRSIFEIPGAKEVAIETSSFSKYAGFTGVRL-GWTVIPKELL 296 (433)
Q Consensus 244 De~~~~-~~~~~~----~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~-G~l~~~~~~~ 296 (433)
||+|.. +.|.+. +.+..+....+.-++++-|.+|++ +++.. +++......+
T Consensus 317 DEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL--~alTQaS~LHvk~~~i 373 (720)
T PRK13578 317 DSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQ--AGFSQTSQIHKKDNHI 373 (720)
T ss_pred eCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcc--hhhhhHhhhhcCCccc
Confidence 999986 445432 112122222223568899999998 56654 5776765443
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-13 Score=138.15 Aligned_cols=304 Identities=13% Similarity=0.108 Sum_probs=165.7
Q ss_pred CCCCCCCCH-HHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccc
Q 045431 100 GYGAEQGEK-PLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQK 177 (433)
Q Consensus 100 ~Y~~~~g~~-~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~ 177 (433)
+...+.|.. +..+.+|+.+ +++ ..-++++|++.++.+ +.+++.+||.|+++..||.+..+.+.+.|..+++..
T Consensus 189 dLl~~~G~i~eAe~~AA~~f----gAd-~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~haLilsga~PVYl~ 263 (714)
T PRK15400 189 SLLDHSGPHKEAEEYIARVF----NAD-RSYMVTNGTSTANKIVGMYSAPAGSTVLIDRNCHKSLTHLMMMSDVTPIYFR 263 (714)
T ss_pred CCCCCChHHHHHHHHHHHHh----CCC-cEEEEeCchHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeEEEec
Confidence 333444544 4444444443 544 567899999999886 688999999999999999999999999997554322
Q ss_pred ccc-ccceEEEeecCc--cCCcccCCCCCCCcc---EEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEecccccc-
Q 045431 178 DAE-KYGKIEYMRCTA--ENGFFPDLSTVARTD---IIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALY- 250 (433)
Q Consensus 178 ~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~- 250 (433)
... .+.-+-.++... ...+...++..++.+ .++|++|++ .|++++ +++|++.|+.++ |++||+|..+
T Consensus 264 P~rn~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pTY-dG~~yd---~~~I~~~~~~~~--ilvDEAwgah~ 337 (714)
T PRK15400 264 PTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTY-DGLLYN---TDFIKKTLDVKS--IHFDSAWVPYT 337 (714)
T ss_pred ccccccCCccCCCccccCHHHHHHHHHhCccccCccEEEEECCCC-ccEecC---HHHHHHHhCCCC--EEEEccchhhh
Confidence 111 000000000000 000000112223333 788888854 899999 577777777776 7899999863
Q ss_pred ccCCCC--Cccccc-CCCCcceEEEecccccccccccce-eeeeccccccccCCcchhHHHHHHHhhccCCCcH----HH
Q 045431 251 ISDDNP--RSIFEI-PGAKEVAIETSSFSKYAGFTGVRL-GWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASN----IS 322 (433)
Q Consensus 251 ~~~~~~--~~~~~~-~~~~~~vi~i~S~sK~~~~~G~r~-G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 322 (433)
.|.+.. .+.... +..++.++++-|.+|++ +++.. +++.+... + + .+++++......++++. .+
T Consensus 338 ~F~p~~~~~sam~~ga~~~~~i~vtQStHKtL--~alTQaS~LHvkg~-v--d----~~~~n~a~~m~~STSPsY~l~AS 408 (714)
T PRK15400 338 NFSPIYEGKCGMSGGRVEGKVIYETQSTHKLL--AAFSQASMIHVKGD-V--N----EETFNEAYMMHTTTSPHYGIVAS 408 (714)
T ss_pred ccCcccCCcChhhcCCCCCCceEEEEchhhcc--cchhHHhHHHHcCC-C--C----HHHHHHHHHHHcCCCcHHHHHHH
Confidence 444321 111211 11124568999999998 56654 46656443 2 1 23444433322222222 23
Q ss_pred HHHHHHhcCc-CChhHHHHHHHHHHHHHHHHHHHHhhc-C------CeeecCCC----------------c---------
Q 045431 323 QAGGLACLSP-EGFKAVHEVIGFYKENTDIIVETFNSL-G------FKVYGGKN----------------A--------- 369 (433)
Q Consensus 323 q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~-g------~~~~~~~~----------------g--------- 369 (433)
..++.+++.. .+ +++.+...+....+++.+.+. + +.+..+.. |
T Consensus 409 LD~a~~~m~~~~G----~~l~~~~i~~a~~~R~~l~~~~~~~~~w~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~ 484 (714)
T PRK15400 409 TETAAAMMKGNAG----KRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHM 484 (714)
T ss_pred HHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHhCCCcccCceEEecChhhcccchhcccCccccccCccccccccc
Confidence 3334444542 33 344444455555555555544 3 33332110 1
Q ss_pred ----cEEEEECCCC----------ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHh
Q 045431 370 ----PYVWVQFPGR----------SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHL 431 (433)
Q Consensus 370 ----~~~~~~~~~~----------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~ 431 (433)
.=+.+..++. -+...+...|+++||.+.-.+.+. -.+-++++.+.++++.+++.|.++
T Consensus 485 ~lDP~Klti~tpgi~~~g~~~~~Gipg~~v~~~L~e~gI~~E~~d~~~----iLfl~s~g~t~~~~~~L~~aL~~f 556 (714)
T PRK15400 485 YLDPIKVTLLTPGMKKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYN----LLFLFSIGIDKTKALSLLRALTDF 556 (714)
T ss_pred ccCCceEEEEeCCCCCCccccccCCCHHHHHHHHHHcCCEEEecCCCe----EEEEeCCCCCHHHHHHHHHHHHHH
Confidence 0134444331 123344445577799996543221 123333566888888888888764
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-13 Score=127.57 Aligned_cols=354 Identities=10% Similarity=0.054 Sum_probs=212.4
Q ss_pred HHHHHHhcCCCCceEEecCCCC---CCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCC-CCCC
Q 045431 52 RKAAHMLKYPDAEVISLGIGDT---TEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLG-IEEG 127 (433)
Q Consensus 52 ~~~~~~~~~~~~~~i~l~~g~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~-~~~~ 127 (433)
..+......+++.+||-..|-- --...+++.+++.+++.+... ........ ....+|-+.|++.. + -+-+
T Consensus 33 aeG~yl~d~~G~r~lDg~sg~W~~~~Gh~~~~i~~Ai~~Q~~~l~~-~~~~~~t~-~Pa~~LA~~L~~~a----P~~~l~ 106 (449)
T COG0161 33 AEGVYLTDIDGRRYLDGMSGLWCVNHGHGRPEIAEAIKKQLDKLPH-VMFGGFTH-EPAIELAEKLAELA----PEGGLD 106 (449)
T ss_pred cceeEEEeCCCCEEEecccHHHHhhcCcCCHHHHHHHHHHHHhCCc-hhhcccCC-chHHHHHHHHHHhC----CCCCcc
Confidence 3344444556667777554431 123578999999999987642 11112222 22556666666654 4 3368
Q ss_pred cEEEcCChHHHHHH-HHHhc-------CCC-CEEEEeCCCChhhhhhHHHhCC-cccccc-cccccceEEEeecCc----
Q 045431 128 DIFVSDGAKCDISR-LQIVF-------GSN-VTMAVQDPSYPAYVDSSVIMGQ-TGEFQK-DAEKYGKIEYMRCTA---- 192 (433)
Q Consensus 128 ~i~~~~G~~~al~~-l~~l~-------~~g-d~Vl~~~p~~~~~~~~~~~~g~-~~~~~~-~~~~~~~~~~~~~~~---- 192 (433)
.|++++|++++++. +.... +|. .+++.-..+|++..-.....|. ...++. ++........++...
T Consensus 107 ~vFf~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~ 186 (449)
T COG0161 107 HVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRR 186 (449)
T ss_pred EEEEeCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCccccc
Confidence 99999999999986 42111 333 3488899999876433333332 111211 111112232333321
Q ss_pred --cCCcccC-------CCC-----CCCccEEEEcCC--CCccccCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCC
Q 045431 193 --ENGFFPD-------LST-----VARTDIIFFCSP--NNPTGAAA-TREQLTRLVQFAKDNGSIIVYDSAYALYISDDN 255 (433)
Q Consensus 193 --~~~~~~~-------~~~-----~~~~~~i~l~~p--~nPtG~~~-~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~ 255 (433)
++...++ +++ .+..-+.++..| +.-+|+.+ ++..++++.++|++||+++|.||+-..|...|.
T Consensus 187 ~~~~~~~~~~~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~ 266 (449)
T COG0161 187 GFFGEGDEEFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGK 266 (449)
T ss_pred CCCCCChHHHHHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCch
Confidence 1111111 111 123344566677 44477665 666899999999999999999999998887776
Q ss_pred CCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHH-----HHHhhccCCCcHHHHHHHHHhc
Q 045431 256 PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFN-----RIVCTCFNGASNISQAGGLACL 330 (433)
Q Consensus 256 ~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~q~~~~~~l 330 (433)
.+......-.+| ++ +++|.+...-+.+|.+++++++. +.+. .+.+..+.+.++++.+++++.|
T Consensus 267 ~FA~e~~gi~PD-i~---~~aKGLT~GY~Pl~a~l~~~~I~--------~~~~~~~~~~f~HG~TYsghPlacAaAla~L 334 (449)
T COG0161 267 MFACEHAGIVPD-IL---CLAKGLTGGYLPLSAVLTSDRIY--------EAFSDGDAGAFMHGHTYSGNPLACAAALANL 334 (449)
T ss_pred hhhhhhcCCCCC-ee---eecccccccchhhHhHhhhHHHH--------HHHhcccCCeeccCCccccCHHHHHHHHHHH
Confidence 543333333344 33 68999875557889888888874 3332 2445566778899999888877
Q ss_pred CcCChhHHHHHHHHHHHHHHHHHHHHhh-c-CCeeecC--CCccEEEEECCC-CC--------hHHHHHHHHHcCCeEec
Q 045431 331 SPEGFKAVHEVIGFYKENTDIIVETFNS-L-GFKVYGG--KNAPYVWVQFPG-RS--------SWDVFSEILEKTHVVTT 397 (433)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~-g~~~~~~--~~g~~~~~~~~~-~~--------~~~~~~~l~~~~gi~v~ 397 (433)
+-... +.+.++.++...++.+.|++ + +...+.. .-|+..-+++.. .. ....+...+.++|+.++
T Consensus 335 ~i~e~---e~l~~~~~~~~~~l~~~L~~~l~~~p~VgdVR~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e~Gl~iR 411 (449)
T COG0161 335 DILEE---EDLLERVAEIGAYLQAGLQAALADHPLVGDVRGLGLIGAIELVADKATKTPFEARVGARVRAAALERGLLIR 411 (449)
T ss_pred HHHHh---cCHHHHHHHHHHHHHHHHHHhcccCCcEEEeeccceEEEEEEecccccccchhhhHHHHHHHHHHHCCeEEe
Confidence 63222 44555566677777777776 2 2222211 246666666642 11 13344445556699999
Q ss_pred CCCCCCCCCCCeEEEe--eccChhHHHHHHHHHHHhhC
Q 045431 398 PGSGFGPGGEGFIRVS--AFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 398 ~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l~ 433 (433)
|.. +.+=++ +..+++++++.+++++++++
T Consensus 412 p~g-------~~i~~~PPliit~~eid~l~~~l~~al~ 442 (449)
T COG0161 412 PLG-------DVIYLMPPLIITREEIDELVDALREALD 442 (449)
T ss_pred ecC-------CEEEEcCCccCCHHHHHHHHHHHHHHHH
Confidence 862 245555 46799999999999998763
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-12 Score=126.80 Aligned_cols=349 Identities=8% Similarity=0.047 Sum_probs=188.5
Q ss_pred HHHHHhcC-CCCceEEecCCCC--CC-CChHHHHH--HHHHHHhhcccCC-CCCCCCCCCCCHHHHHHHHHHHhccC-CC
Q 045431 53 KAAHMLKY-PDAEVISLGIGDT--TE-PIPEVITS--ALAKRSYALSTQE-GYSGYGAEQGEKPLRAAIASTFYKDL-GI 124 (433)
Q Consensus 53 ~~~~~~~~-~~~~~i~l~~g~~--~~-~~~~~~~~--a~~~~~~~~~~~~-~~~~Y~~~~g~~~lr~~la~~l~~~~-~~ 124 (433)
.+...... +++..||+..|.- .+ ..+|.+.+ ++.+++.+..... ....+ . .+....+++.+.+.. +-
T Consensus 34 ~G~~l~D~~dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~ql~~l~~~~~~~~~~-~----~~~~~~la~~l~~~~~p~ 108 (443)
T PRK08297 34 QGSYLVDARTGRRYLDMFTFFASSALGMNHPALADDPEFRAELGRAALNKPSNSDV-Y----TVEMARFVDTFARVLGDP 108 (443)
T ss_pred cCCEEEECCCCCEeeecccCHhhhcCCCCChHHhhHHHHHHHHHHhhhhccccCCc-C----CHHHHHHHHHHHhhcCCC
Confidence 33334443 6778899876643 22 36788888 9998886532101 11122 1 123333444443211 12
Q ss_pred CCCcEEEcCChHHHHHHHHHhc---------CC------CCEEEEeCCCChhhhhhHHHhCC-cccccccccccceEEEe
Q 045431 125 EEGDIFVSDGAKCDISRLQIVF---------GS------NVTMAVQDPSYPAYVDSSVIMGQ-TGEFQKDAEKYGKIEYM 188 (433)
Q Consensus 125 ~~~~i~~~~G~~~al~~l~~l~---------~~------gd~Vl~~~p~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~ 188 (433)
..+.|++++++++|......+. .. ..+|+....+|++.......... ......... ......+
T Consensus 109 ~~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~-~~~~~~~ 187 (443)
T PRK08297 109 ELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFP-KFDWPRI 187 (443)
T ss_pred CCCEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCC-CCCcccc
Confidence 3469999999999988632222 01 25799999999886544443321 111000000 0000001
Q ss_pred -------ecCccC--Cc-------ccC----CCC-CCCccEEEEcCC-CCcccc-CCCHHHHHHHHHHHHHcCCEEEEec
Q 045431 189 -------RCTAEN--GF-------FPD----LST-VARTDIIFFCSP-NNPTGA-AATREQLTRLVQFAKDNGSIIVYDS 245 (433)
Q Consensus 189 -------~~~~~~--~~-------~~~----~~~-~~~~~~i~l~~p-~nPtG~-~~~~~~~~~i~~~a~~~~~~li~De 245 (433)
+..... .. ..+ ++. ..++.+|++ .| +.-.|. ..+++.+++|.++|++||+++|.||
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iAavI~-EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DE 266 (443)
T PRK08297 188 DNPKLRFPLPGEDLEEVEALEAEALAQARAAFERHPHDIACFIA-EPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDE 266 (443)
T ss_pred CCCCCCCCCcccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEE-ccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 100000 00 000 111 135555554 55 444454 4688999999999999999999999
Q ss_pred cccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHH-HHHhhccCCCcHHHHH
Q 045431 246 AYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFN-RIVCTCFNGASNISQA 324 (433)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~q~ 324 (433)
++.+|...|.......++-.+| ++ +|+|.++ +|.+++.+++... . ...+. .....++.+.++++.+
T Consensus 267 V~tGfGRtG~~~a~~~~gv~PD-iv---~~gK~l~-----~~a~l~~~~i~~~-~---~~~~~~~~~~~~T~~gnpl~~a 333 (443)
T PRK08297 267 VQTGVGLTGTAWAYQQLGVRPD-IV---AFGKKTQ-----VCGIMAGRRVDEV-E---DNVFAVSSRINSTWGGNLVDMV 333 (443)
T ss_pred hhhccCccchHHHHHhcCCCCC-EE---Eeccccc-----ccceecchHHHHh-h---hhhccCccccCCCCCccHHHHH
Confidence 9998766554322222322344 23 5799874 2333333332100 0 00010 1123455667888888
Q ss_pred HHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhh----cC-Ce-eecCCCccEEEEECCCCC-hHHHHHHHHHcCCeEec
Q 045431 325 GGLACLSPEGFKAVHEVIGFYKENTDIIVETFNS----LG-FK-VYGGKNAPYVWVQFPGRS-SWDVFSEILEKTHVVTT 397 (433)
Q Consensus 325 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~g-~~-~~~~~~g~~~~~~~~~~~-~~~~~~~l~~~~gi~v~ 397 (433)
++.+.++.... +++.++.++..+++.+.|++ +. +. .+.+ .|.++.+.++... ...+...++ ++||.+.
T Consensus 334 aa~a~L~~l~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~vrg-~G~~~~i~~~~~~~~~~~~~~l~-~~Gvl~~ 408 (443)
T PRK08297 334 RARRILEVIEE---DGLVENAARQGEYLLARLEELAAEFPAVVSNVRG-RGLMCAFDLPTTADRDEVIRRLW-EEGVLVL 408 (443)
T ss_pred HHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHHCCCcceeeec-cceEEEEEecCHHHHHHHHHHHH-HCCEEEe
Confidence 88888762211 23334444555555555544 32 21 2233 4677778886322 335556665 5599997
Q ss_pred CCCCCCCCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 398 PGSGFGPGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 398 ~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
|+. .+.+||+ +..+++++++++++|.+++
T Consensus 409 ~~~------~~~lr~~P~l~~t~~eid~~l~~l~~~l 439 (443)
T PRK08297 409 PCG------ERSIRFRPALTVTTEEIDAAIDALRRAL 439 (443)
T ss_pred cCC------CCeEEEECCccCCHHHHHHHHHHHHHHH
Confidence 742 3568885 6779999999999998876
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-12 Score=113.43 Aligned_cols=282 Identities=12% Similarity=0.081 Sum_probs=179.5
Q ss_pred CcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChh--hhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CC-
Q 045431 127 GDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPA--YVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LS- 201 (433)
Q Consensus 127 ~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~- 201 (433)
.-.++...++.+++. +..++.|||+|++-.-+-.+ ..+..+.+| +++..++.+.......+ +.
T Consensus 69 ~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~wg~ra~D~~~r~g------------a~V~~v~~~~G~~~~le~i~~ 136 (385)
T KOG2862|consen 69 QTFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTWGQRAADCARRYG------------AEVDVVEADIGQAVPLEEITE 136 (385)
T ss_pred ceEEEecCCcchHHHHHHhhcCCCCeEEEEEechHHHHHHHHHHhhC------------ceeeEEecCcccCccHHHHHH
Confidence 344455556788886 78899999999886665444 356667777 47777776654332222 11
Q ss_pred --CCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccc
Q 045431 202 --TVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYA 279 (433)
Q Consensus 202 --~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~ 279 (433)
...+++++++++-...||+.-+ -+..+.++|++|++++++|.+-+- .+.++ .+|... ..+......|.+
T Consensus 137 ~lsqh~p~~vfv~hgdsSTgV~q~--~~~~~g~lc~k~~~lllVD~VaSl---ggt~F---~mDewg-VDvaytgSQKaL 207 (385)
T KOG2862|consen 137 KLSQHKPKAVFVTHGDSSTGVLQD--LLAISGELCHKHEALLLVDTVASL---GGTEF---EMDEWG-VDVAYTGSQKAL 207 (385)
T ss_pred HHHhcCCceEEEEecCccccccch--HHHHHHHHhhcCCeEEEEechhhc---CCccc---eehhhc-ccEEEecchhhc
Confidence 1368999999988889999755 256677888999999999998773 12222 233322 224444458988
Q ss_pred cccccceeeeecccccccc----CC---cchhHH---HHHHH-----hhccCCCcHHHHHHHHHhcCcCChhHHHHHHHH
Q 045431 280 GFTGVRLGWTVIPKELLFS----DG---FPVAKD---FNRIV-----CTCFNGASNISQAGGLACLSPEGFKAVHEVIGF 344 (433)
Q Consensus 280 ~~~G~r~G~l~~~~~~~~~----~~---~~~~~~---~~~~~-----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 344 (433)
|.| -.++-+..++..+.+ +. .-+.+. ++-+. .....+++....+...++|....++.+++.+++
T Consensus 208 ~aP-~GLsiisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~r 286 (385)
T KOG2862|consen 208 GAP-AGLSIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRR 286 (385)
T ss_pred CCC-CCcceeecCHHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 843 235667666655311 00 000000 00000 112234454444544455554445668999999
Q ss_pred HHHHHHHHHHHHhhcCCeeecC---CCc-cEEEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--c-c
Q 045431 345 YKENTDIIVETFNSLGFKVYGG---KNA-PYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--F-G 416 (433)
Q Consensus 345 ~~~~~~~l~~~l~~~g~~~~~~---~~g-~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~-~ 416 (433)
.++..+.++..|+++|++.... ... ..-.+.+| +.+-.+++..+..++++.+..|- ++.....+||.+ + .
T Consensus 287 H~e~s~~l~~~l~~~GLq~fv~~e~~rlptvttv~vp~gvDw~dVv~~~~~~~~vei~ggl--g~~~gKv~RIGl~gcna 364 (385)
T KOG2862|consen 287 HREMSKWLKLSLEALGLQLFVVDEELRLPTVTTVKVPYGVDWKDVVAYAMSHYVVEIGGGL--GPTVGKVFRIGLLGCNA 364 (385)
T ss_pred HHHHHHHHHHHHHHhCccceecChhhccCcceeeecCCCCCHHHHHHHHHHhcCEEecccc--CCCcccEEEEEEeeccC
Confidence 9999999999999998765321 111 23456666 66778899998888788875543 455678999994 2 3
Q ss_pred ChhHHHHHHHHHHHhh
Q 045431 417 HRGNVLEACKRFKHLY 432 (433)
Q Consensus 417 ~~~~l~~~l~~l~~~l 432 (433)
+.+.++..++.|+.++
T Consensus 365 ~~e~i~~v~~ll~~al 380 (385)
T KOG2862|consen 365 NVEYIDNVVELLKLAL 380 (385)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 7899999999988765
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.8e-12 Score=133.19 Aligned_cols=319 Identities=14% Similarity=0.110 Sum_probs=193.9
Q ss_pred EecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCC-----CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH
Q 045431 67 SLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA-----EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR 141 (433)
Q Consensus 67 ~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~-----~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~ 141 (433)
..+.|.++.-.|+.+.+.+.+.- ..+..|+| ++|..+..-.....+.+..|.++.|+.+..+++++.++
T Consensus 80 ~ig~G~y~~~~P~vi~~~i~~~~------~~~t~ytPyQ~EisQG~Leal~~~Qt~la~LtG~~~anaSl~d~aTAa~ea 153 (954)
T PRK05367 80 YIGQGYYGTHTPPVILRNILENP------AWYTAYTPYQPEISQGRLEALLNFQTMVADLTGLEIANASLLDEATAAAEA 153 (954)
T ss_pred ccCCCCCCCcCcHHHHHHHHhCc------chhhccCCCChHHHHHHHHHHHHHHHHHHHHHCCChhhccccccHHHHHHH
Confidence 45677766556776655555521 33455554 23443333333333333448999999999999999986
Q ss_pred H-HHh-cCC--CCEEEEeCCCChhhhhhHHHh-CCcccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCC
Q 045431 142 L-QIV-FGS--NVTMAVQDPSYPAYVDSSVIM-GQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNN 216 (433)
Q Consensus 142 l-~~l-~~~--gd~Vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~n 216 (433)
+ .++ .++ +|+|++++.+|+.....++.. ...| .+++.++.+.+ ++ ..++.++++.+| |
T Consensus 154 ~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G---------~ev~~~~~~~d------~~-~~~~~~vlvq~p-~ 216 (954)
T PRK05367 154 MALAKRVSKSKSNRFFVDDDVHPQTLDVLRTRAEPLG---------IEVVVGDAAKA------LD-HDDVFGVLLQYP-G 216 (954)
T ss_pred HHHhhhhccCCCCEEEEcCccCHHHHHHHHHHHHhCC---------CEEEEecCccC------CC-cccEEEEEEecC-C
Confidence 4 333 345 489999999999988766443 2222 37777776431 11 134555555576 5
Q ss_pred ccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccc-----ccccccceeeeec
Q 045431 217 PTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKY-----AGFTGVRLGWTVI 291 (433)
Q Consensus 217 PtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~-----~~~~G~r~G~l~~ 291 (433)
-+|.+.+ +++|+++|+++|+++++|....-+... .+..++ +..|+++|..|+ +|-| -.||+.+
T Consensus 217 ~~G~i~d---~~~i~~~ah~~Gal~~vda~~~Al~~l---~~pge~----GaDi~vgs~qkfg~P~g~GGP--~aGflav 284 (954)
T PRK05367 217 TSGEVRD---YTALIAAAHARGALVAVAADLLALTLL---TPPGEM----GADIAVGSAQRFGVPMGFGGP--HAAYFAV 284 (954)
T ss_pred CCeeecc---HHHHHHHHHHcCCEEEEEehhhhccCC---CChhhc----CCCEEEeeCcccCCCCCCCCC--CEEEEEE
Confidence 6999876 899999999999999998755322211 112222 334899999998 5434 4899999
Q ss_pred cccccccCCcchhH--------------------HHHHHHhhccCCCcHHHHHHHHHh--cCcCChhHHHHHHHHHHHHH
Q 045431 292 PKELLFSDGFPVAK--------------------DFNRIVCTCFNGASNISQAGGLAC--LSPEGFKAVHEVIGFYKENT 349 (433)
Q Consensus 292 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~q~~~~~~--l~~~~~~~~~~~~~~~~~~~ 349 (433)
++++...--.++.. .+++.+..++.+++. ...++.+. +.-.+...+++..++...+.
T Consensus 285 r~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict~q-aL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la 363 (954)
T PRK05367 285 RDAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNICTAQ-VLLAVMASMYAVYHGPEGLKAIARRVHRLA 363 (954)
T ss_pred CHHHHhhCCCCeeeeecccCCCcccccccccccccccccccccccchHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 98775221111111 111211222221111 11111111 11122245688888999999
Q ss_pred HHHHHHHhhcCCeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHH
Q 045431 350 DIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKR 427 (433)
Q Consensus 350 ~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~ 427 (433)
+++.+.|++.|+++..+...--+.++++ .+..++.++++++ ||.+.. ..++.+|+|+ +++++||+.+++.
T Consensus 364 ~~l~~~L~~~G~~~~~~~~f~~~~~~~~-~~~~~i~~~l~~~-gi~~~~------~~~~~l~is~~e~~t~~did~l~~~ 435 (954)
T PRK05367 364 AILAAGLRALGLEVVHDSFFDTLTVEVG-GDAAAVLARALAA-GINLRR------VDDDHVGISLDETTTREDLAALLAV 435 (954)
T ss_pred HHHHHHHHhcCcccCCCCCCCeEEEeCC-CCHHHHHHHHHHC-Cceecc------ccCCEEEEEecccCCHHHHHHHHHH
Confidence 9999999888888764322222445554 3567777777655 998832 1246799995 6689999999999
Q ss_pred HH
Q 045431 428 FK 429 (433)
Q Consensus 428 l~ 429 (433)
|.
T Consensus 436 l~ 437 (954)
T PRK05367 436 FG 437 (954)
T ss_pred Hc
Confidence 86
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-12 Score=111.31 Aligned_cols=279 Identities=15% Similarity=0.184 Sum_probs=180.4
Q ss_pred CCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccce
Q 045431 106 GEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGK 184 (433)
Q Consensus 106 g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~ 184 (433)
.+..+.+.+++|+ ++ |.+-+|+|+.++-.+ ..+++.+||.|+++..+|....-+.+.+| ++
T Consensus 62 pI~~F~~dlaeFl----g~--D~~R~t~GARe~KfavMhal~~~gd~vV~D~~aHYttyvAAErag------------l~ 123 (382)
T COG1103 62 PIKDFLEDLAEFL----GM--DEVRVTAGAREAKFAVMHALCKEGDWVVVDSLAHYTTYVAAERAG------------LN 123 (382)
T ss_pred cHHHHHHHHHHHh----CC--ceeeecccchhhHHHHHHHhccCCCEEEEcCcchHHHHHHHHhcC------------Ce
Confidence 3566777799997 54 678899999999887 58889999999999999988888888888 47
Q ss_pred EEEeecCccCCcccCCCC-----------C-CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEecccccccc
Q 045431 185 IEYMRCTAENGFFPDLST-----------V-ARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYIS 252 (433)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~-----------~-~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~ 252 (433)
+..+|......+..+++. . ..+.+.+|++|..-.|.. .+.++++++|+++|++++...+|.....
T Consensus 124 v~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl---~Dakkva~ic~e~gvPlllN~AYt~Grm 200 (382)
T COG1103 124 VAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNL---ADAKKVAKICREYGVPLLLNCAYTVGRM 200 (382)
T ss_pred EEecCCCCCCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCc---hhhHHHHHHHHHcCCceEeecceeeccc
Confidence 777775433333333221 1 347778888887667765 4489999999999999999999984211
Q ss_pred CCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHH-----------hhc-cCCCcH
Q 045431 253 DDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIV-----------CTC-FNGASN 320 (433)
Q Consensus 253 ~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~-~~~~~~ 320 (433)
|.+..++.. .++++|-+|+++ +.-.+|.+..+.++- +.+-+.- ..+ ..+.+.
T Consensus 201 ---pvs~ke~g~----DFiVgSGHKsmA-As~PiGvl~~~eE~a--------e~V~r~Sg~~~~~KEvellGCT~rGapi 264 (382)
T COG1103 201 ---PVSGKEIGA----DFIVGSGHKSMA-ASAPIGVLAMSEEWA--------EIVLRRSGRAFPKKEVELLGCTVRGAPI 264 (382)
T ss_pred ---cccccccCC----CEEEecCccchh-ccCCeeEEeehhHHH--------HHHHhhcccccccceeeeecccccCchH
Confidence 556665532 388999999997 666899999888773 2221110 011 122222
Q ss_pred HHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeec--CCCccEEEEECCCCC---------hHHHHHHH
Q 045431 321 ISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYG--GKNAPYVWVQFPGRS---------SWDVFSEI 388 (433)
Q Consensus 321 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~--~~~g~~~~~~~~~~~---------~~~~~~~l 388 (433)
+...|..-... +. -+.++.--++.+++.+.|+++ |+.-.+ |..--.+.+..|... .--+..+
T Consensus 265 vTlmASfP~V~----eR-VkrWdeEv~kaR~fv~elEkigg~~qlG~rPk~HdLm~Fetp~f~eIakk~~r~gyFlY~E- 338 (382)
T COG1103 265 VTLMASFPHVV----ER-VKRWDEEVEKARWFVAELEKIGGVKQLGERPKNHDLMKFETPVFHEIAKKHKRKGYFLYEE- 338 (382)
T ss_pred HHHHhcCHHHH----HH-HHHHHHHHHHHHHHHHHHHHhhhHHHhCCCCcccceeeecCchHHHHHHhCcCCceeeHHH-
Confidence 22222111110 11 222334445677888888888 465443 333334444444211 1123344
Q ss_pred HHcCCeE-ecCCCCCCCCCCCeEEEeecc-ChhHHHHHHHHHHHhhC
Q 045431 389 LEKTHVV-TTPGSGFGPGGEGFIRVSAFG-HRGNVLEACKRFKHLYK 433 (433)
Q Consensus 389 ~~~~gi~-v~~g~~f~~~~~~~iRi~~~~-~~~~l~~~l~~l~~~l~ 433 (433)
+++.||. +.||. ..+|.+|.+. +.|+++..+++++++++
T Consensus 339 LK~RgI~GI~~G~------Tk~~K~svyGl~~Eqve~V~~afkeI~e 379 (382)
T COG1103 339 LKKRGIHGIQPGQ------TKYFKLSVYGLSWEQVEYVVDAFKEIAE 379 (382)
T ss_pred HHhcCccccccCc------eeEEEEEeecCCHHHHHHHHHHHHHHHH
Confidence 4444553 44443 5689999654 99999999999998863
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-12 Score=134.39 Aligned_cols=320 Identities=14% Similarity=0.108 Sum_probs=194.4
Q ss_pred EecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCC--CC----CHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHH
Q 045431 67 SLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAE--QG----EKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDIS 140 (433)
Q Consensus 67 ~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~--~g----~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~ 140 (433)
..+.|.++.-.|+.+.+.+.+...-+ ..++-|.+. +| ..++++.+|+++ |++++|+.++.|++++.+
T Consensus 107 fiG~G~y~~~~P~~v~~~i~~~~~~~---TaytPYqaEisQG~lqal~~~Qt~ia~Lt----G~~~anaSL~d~aTAaae 179 (993)
T PLN02414 107 YIGMGYYNTHVPPVILRNILENPGWY---TQYTPYQAEIAQGRLESLLNYQTMITDLT----GLPMSNASLLDEGTAAAE 179 (993)
T ss_pred ccCCCCCCccCCHHHHHHHHhChHHH---hhcCCCchHHHHHHHHHHHHHHHHHHHHh----CCChhhEeecCChHHHHH
Confidence 34667666668888878887755322 223334331 33 445666666665 999999999999999999
Q ss_pred HH-HHh-cCCC--CEEEEeCCCChhhhhhHHHhC-CcccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCC
Q 045431 141 RL-QIV-FGSN--VTMAVQDPSYPAYVDSSVIMG-QTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPN 215 (433)
Q Consensus 141 ~l-~~l-~~~g--d~Vl~~~p~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~ 215 (433)
++ .+. +++| |+|++.+..|+.+...++... ..| .+++.++.+..+ . ....+-++++.+|+
T Consensus 180 a~~~a~~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~G---------ieV~~v~~~~~~-----~-~~~~v~~vlvq~P~ 244 (993)
T PLN02414 180 AMAMCNNILKGKKKKFLIASNCHPQTIDVCQTRADGLG---------LEVVVADEKDFD-----Y-SSGDVCGVLVQYPA 244 (993)
T ss_pred HHHHHHhcccCCCCEEEEcCccCHhHHHHHHHhhhhcC---------CEEEEecchhhc-----c-ccCceEEEEEecCC
Confidence 64 333 4544 789999999999887775442 223 367777764311 0 11233344444553
Q ss_pred CccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccc---cccccceeeeecc
Q 045431 216 NPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYA---GFTGVRLGWTVIP 292 (433)
Q Consensus 216 nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~---~~~G~r~G~l~~~ 292 (433)
.+|.+.+ +++|+++|+++|+++++ .++.. .... ..+..++ +..|++++..|+. |..|-+.||++++
T Consensus 245 -~~G~v~d---v~~I~~~ah~~GaL~iV-aad~l-al~~-l~~pge~----GADi~vgsgqKwg~P~G~GGP~aGflavr 313 (993)
T PLN02414 245 -TDGEVLD---YAEFVKNAHANGVKVVM-ATDLL-ALTM-LKPPGEW----GADIVVGSAQRFGVPMGYGGPHAAFLATS 313 (993)
T ss_pred -CCeEEcC---HHHHHHHHHHcCCEEEE-EECHH-HhcC-CCCHhhc----cCcEEEECCCccccCCCCCCCCeeEEEEC
Confidence 4999877 88999999999999998 44432 1111 1122222 2348899999986 2245568999999
Q ss_pred ccccccCCc-chhH-------------------HHHHHHhhccCCCcHHHHHHHHHhc--CcCChhHHHHHHHHHHHHHH
Q 045431 293 KELLFSDGF-PVAK-------------------DFNRIVCTCFNGASNISQAGGLACL--SPEGFKAVHEVIGFYKENTD 350 (433)
Q Consensus 293 ~~~~~~~~~-~~~~-------------------~~~~~~~~~~~~~~~~~q~~~~~~l--~~~~~~~~~~~~~~~~~~~~ 350 (433)
+++.. ..+ ++.. +-.+....+.+..+..+..++++.+ .-.+...+++..++...+..
T Consensus 314 ~~~~r-~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~ 392 (993)
T PLN02414 314 QEYKR-LMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAG 392 (993)
T ss_pred HHHHh-hCCCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 87642 111 1111 1011111111111112222233211 11112346788888999999
Q ss_pred HHHHHHhhcCCeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHH
Q 045431 351 IIVETFNSLGFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRF 428 (433)
Q Consensus 351 ~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l 428 (433)
++.+.|++.|+++..+....-+.++++ ...++.++|+++ ||.+.... .+.+|+|+ +++++||+.+++.|
T Consensus 393 ~l~~~L~~~G~~~~~~~~f~~vt~~~~--~~~~v~~~L~~~-gI~l~~~~------~~~lrvs~~e~~T~edId~L~~~l 463 (993)
T PLN02414 393 VFAAGLKKLGFQVQSLPFFDTVKVKCS--DADAIADAAAKV-GINLRVVD------ANTVTVSFDETTTLEDVDKLFKVF 463 (993)
T ss_pred HHHHHHhhcCCccCCCCCcCeEEEecC--CHHHHHHHHHHC-CCeeEEec------CCeEEEEeeccCCHHHHHHHHHHH
Confidence 999999888887754422223445554 456677776654 99775321 35799995 67899999999998
Q ss_pred H
Q 045431 429 K 429 (433)
Q Consensus 429 ~ 429 (433)
.
T Consensus 464 ~ 464 (993)
T PLN02414 464 A 464 (993)
T ss_pred c
Confidence 6
|
|
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.5e-14 Score=127.68 Aligned_cols=333 Identities=18% Similarity=0.213 Sum_probs=202.0
Q ss_pred ceEEecCCCC------CCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHH
Q 045431 64 EVISLGIGDT------TEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 64 ~~i~l~~g~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~ 137 (433)
.++|+++-++ ..++.+.+.+++.+.-.... .....-+...-..++.+-+|+|+ + .++.+++.-|-..
T Consensus 137 ~~lNlgSYNYLGFa~~~g~ca~~~~~~~~kygl~~c--ss~~e~G~~~~hkelE~l~A~f~----g-~e~a~vF~mGf~T 209 (519)
T KOG1357|consen 137 RCLNLGSYNYLGFAQSVGPCAEASLKSFDKYGLSRC--SSRHEAGTTEEHKELEELVARFL----G-VEDAIVFSMGFAT 209 (519)
T ss_pred eeeeecccccccccccCCcCChHHHHHHHHhccccc--ccchhcccHHHHHHHHHHHHHhc----C-CcceEEEeccccc
Confidence 3566654332 34566777766666432211 11111112223345555555554 5 4578888888433
Q ss_pred HHHHHHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCC-----cc
Q 045431 138 DISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VAR-----TD 207 (433)
Q Consensus 138 al~~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-----~~ 207 (433)
.-..+..++.||.-|+-++..|.+...-++..|+ .+....+++-.++..-+.. .++ -+
T Consensus 210 Ns~~~p~l~~~gsLIiSDelNHaSi~~GaRLSgA------------tiRVfkHNdm~~LEr~Lrd~I~~gqP~Thrp~kk 277 (519)
T KOG1357|consen 210 NSMNIPSLLGKGSLIISDELNHASLITGARLSGA------------TTRVFRHNDMQGLERLLRDAIVYGQPKTHRPWKK 277 (519)
T ss_pred cccCcceeecCCcceeeccccchheeccccccCc------------eEEEEecCCHHHHHHHHHHHHhcCCCCcCCcchh
Confidence 2223688899999999999999999888888883 6666666543332211111 111 23
Q ss_pred EEEEc-CCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCC--CcceEEEeccccccccccc
Q 045431 208 IIFFC-SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGA--KEVAIETSSFSKYAGFTGV 284 (433)
Q Consensus 208 ~i~l~-~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~--~~~vi~i~S~sK~~~~~G~ 284 (433)
.+++. .--.--|.+.. +.+++.++++|..+++.||+|+-...+.......++.+. .|..|.+|+|.|++|.+|
T Consensus 278 i~iivegiysmEg~iv~---Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSfga~G- 353 (519)
T KOG1357|consen 278 ILICVEGIYSMEGTIVD---LPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSFGAAG- 353 (519)
T ss_pred eeeeeccceeccCeecc---cHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCchhheeecceehhhccccc-
Confidence 33333 22334455544 899999999999999999999964443223333333221 355688999999999788
Q ss_pred ceeeeeccccccccCCcchhHHHHHHH---hhccCCCcHHHHHHHHHhcC----cCChhHHHHHHHHHHHHHHHHHHHHh
Q 045431 285 RLGWTVIPKELLFSDGFPVAKDFNRIV---CTCFNGASNISQAGGLACLS----PEGFKAVHEVIGFYKENTDIIVETFN 357 (433)
Q Consensus 285 r~G~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~q~~~~~~l~----~~~~~~~~~~~~~~~~~~~~l~~~l~ 357 (433)
||+.++++++ +.+.... ......++++.|.. ...+. ..+...-++..+++++++.+++..|+
T Consensus 354 --Gyiagsk~li--------d~lrt~s~~~~yat~~sppvaqq~-~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~ 422 (519)
T KOG1357|consen 354 --GYIAGSKELI--------DYLRTPSPSALYATSLSPPVAQQI-LTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQ 422 (519)
T ss_pred --ceecCcHHHH--------hhhccCCCceeecccCChHHHHHH-HHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhh
Confidence 9999999886 3222111 11223345555553 33332 12224457778899999999999999
Q ss_pred hcCCeeecCCCccEEEEECC-CCChHHHHHHHHHcCCeEecCCCC-CCCCCCCeEEEeec--cChhHHHHHHHHHHHh
Q 045431 358 SLGFKVYGGKNAPYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSG-FGPGGEGFIRVSAF--GHRGNVLEACKRFKHL 431 (433)
Q Consensus 358 ~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~-f~~~~~~~iRi~~~--~~~~~l~~~l~~l~~~ 431 (433)
..|+.+.+....+.+-+-+- +.....+-++++++ ++.+..+.. ..+--...+|++.. .+.|+++.+++.+.+.
T Consensus 423 ~~gfivyG~~dSpVvplll~~~~k~~~f~r~~l~~-nigvVvvgfPatpl~e~r~R~c~Sa~ht~e~ld~~l~~i~~~ 499 (519)
T KOG1357|consen 423 KMGFIVYGNNDSPVVPLLLYGPAKIVAFSREMLER-NIGVVVVGFPATPLLESRARFCLSASHTKEDLDRALEVIDRV 499 (519)
T ss_pred cCcEEEecCCCCCcceeeecCcccccHHHHHHHhc-CceEEEEeCCCchHHHhHHHhhhcccccHHHHHHHHHHHhhh
Confidence 99999988777765444332 22334555566665 665544332 22333567888853 4789999999887654
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.8e-12 Score=129.91 Aligned_cols=296 Identities=15% Similarity=0.109 Sum_probs=161.5
Q ss_pred CCCCCH-HHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCccccccccc
Q 045431 103 AEQGEK-PLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAE 180 (433)
Q Consensus 103 ~~~g~~-~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~ 180 (433)
.+.|.. +..+.+|+.+ +++ ..-++++|++.++.+ +.+++.+||.|+++..||.+..+.+.+.|..+++.....
T Consensus 192 ~~~G~i~eAe~~aA~~f----gAd-~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~~aLilsga~PVYl~P~~ 266 (713)
T PRK15399 192 DHTGPHLEAEEYIARTF----GAE-QSYIVTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLAHLLMMSDVVPIWLKPTR 266 (713)
T ss_pred CCChHHHHHHHHHHHHh----CCC-cEEEEeCChHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeeEEecccc
Confidence 344444 4444444443 543 567899999999886 788999999999999999999999999997555432221
Q ss_pred -ccceEEEeecCccCCccc-----CCCCCC---CccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEE-EEeccccc-
Q 045431 181 -KYGKIEYMRCTAENGFFP-----DLSTVA---RTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSII-VYDSAYAL- 249 (433)
Q Consensus 181 -~~~~~~~~~~~~~~~~~~-----~~~~~~---~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~l-i~De~~~~- 249 (433)
.+.-+ -++.+ ..+.. .+++.+ ++++++|++|++ -|++++ +++|++.| |+.+ ++||+|..
T Consensus 267 n~~Gi~--g~I~~-~~~~~e~I~~~i~~~p~~~~p~~vvit~pTY-dGi~yd---~~~I~~~~---g~~~ilvDEAhgah 336 (713)
T PRK15399 267 NALGIL--GGIPR-REFTRDSIEEKVAATTQAQWPVHAVITNSTY-DGLLYN---TDWIKQTL---DVPSIHFDSAWVPY 336 (713)
T ss_pred cccCCc--CCCCh-hhccHHHHHHHHHhCCCcCCceEEEEECCCC-CceeeC---HHHHHHHh---CCCEEEEeccchhh
Confidence 00000 00000 00000 111222 346888889954 899999 55566655 5665 69999986
Q ss_pred cccCCCC--Cccccc-CCCCcceEEEecccccccccccce-eeeeccccccccCCcchhHHHHHHHhhccCCCcHH----
Q 045431 250 YISDDNP--RSIFEI-PGAKEVAIETSSFSKYAGFTGVRL-GWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNI---- 321 (433)
Q Consensus 250 ~~~~~~~--~~~~~~-~~~~~~vi~i~S~sK~~~~~G~r~-G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 321 (433)
+.|.+.. .+.... .+.+..++++-|.+|++ +++.- +++.+...+ + .++++.......++++..
T Consensus 337 ~~F~p~~~~~sam~~~~~aD~~i~~tQStHKtL--~alTQaS~iHvk~~v---d----~~~~n~a~~m~~STSPsY~LmA 407 (713)
T PRK15399 337 THFHPIYQGKSGMSGERVPGKVIFETQSTHKML--AAFSQASLIHIKGEY---D----EETFNEAFMMHTSTSPSYPIVA 407 (713)
T ss_pred hhcCcccCCcChhhCCCCCCeeeeeeeehhccc--cccchheeeeecCCC---C----HHHHHHHHHHHcCCCcHHHHHH
Confidence 3344321 222222 12233456689999998 56654 566665442 1 234444333222222322
Q ss_pred HHHHHHHhcCc-CChhHHHHHHHHHHHHHHHHHHHHhhc-C------CeeecCC--------------------------
Q 045431 322 SQAGGLACLSP-EGFKAVHEVIGFYKENTDIIVETFNSL-G------FKVYGGK-------------------------- 367 (433)
Q Consensus 322 ~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~-g------~~~~~~~-------------------------- 367 (433)
+..++.+++.. .+ +++.+...+....+++.+.+. + +.+..++
T Consensus 408 SLD~a~~~m~~~~G----~~l~~~~i~~a~~fR~~l~~~~~~~~~w~f~~~~~~~~~~~~~w~l~p~~~whgf~~~~~~~ 483 (713)
T PRK15399 408 SVETAAAMLRGNPG----KRLINRSVERALHFRKEVQRLREESDGWFFDIWQPENVDEAECWPVAPGEQWHGFKDADADH 483 (713)
T ss_pred HHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHhccccccCceeeecCccccCCccceecCCCccccccccccccc
Confidence 33333444442 33 333444444444555555443 2 2222210
Q ss_pred ---CccEEEEECCC-----------CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHh
Q 045431 368 ---NAPYVWVQFPG-----------RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHL 431 (433)
Q Consensus 368 ---~g~~~~~~~~~-----------~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~ 431 (433)
.-.=+.+..++ .....+. ..|+++||.+.-.+.+. -.+-++.+.+.++++.+++.|.++
T Consensus 484 ~~lDP~KltI~t~g~~~~g~~~~~Gi~g~~l~-~~L~e~gI~~E~~d~~~----vL~l~s~g~t~~~~~~L~~aL~~f 556 (713)
T PRK15399 484 MFLDPVKVTILTPGMDEQGNMSEEGIPAALVA-KFLDERGIVVEKTGPYN----LLFLFSIGIDKTKAMGLLRGLTEF 556 (713)
T ss_pred ccCCCceEEEEecCcccccccccCCCCHHHHH-HHHHHcCCEEEecCCCe----EEEEeCCCCCHHHHHHHHHHHHHH
Confidence 00113444442 2333444 44577799996543321 123334566888899888888764
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.3e-12 Score=123.30 Aligned_cols=298 Identities=18% Similarity=0.176 Sum_probs=179.1
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHH-HHh-cCCCCEEEEeC
Q 045431 79 EVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRL-QIV-FGSNVTMAVQD 156 (433)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l-~~l-~~~gd~Vl~~~ 156 (433)
.+..+++.+.+.. .....+ ..-..++.+++++|+ + ..+++.+++++.||.++ .++ +++||+|+++.
T Consensus 5 ~e~~~~v~~~l~s----~~~~~~--g~~~~~fE~~~a~~~----g--~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~ 72 (363)
T PF01041_consen 5 EEEIDAVLEVLRS----GWLSTY--GPYVEEFEKEFAEYF----G--VKYAVAVSSGTSALHLALRALGLGPGDEVIVPA 72 (363)
T ss_dssp HHHHHHHHHHHHH----TCCSSS--SHHHHHHHHHHHHHH----T--SSEEEEESSHHHHHHHHHHHTTGGTTSEEEEES
T ss_pred HHHHHHHHHHHHh----CCccCC--CHHHHHHHHHHHHHh----C--CCeEEEeCChhHHHHHHHHhcCCCcCceEecCC
Confidence 3445566666654 333333 235689999999997 4 56888888889999874 443 57999999999
Q ss_pred CCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEEcCCCCccccCCCHHHHHHHH
Q 045431 157 PSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFFCSPNNPTGAAATREQLTRLV 231 (433)
Q Consensus 157 p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~~p~nPtG~~~~~~~~~~i~ 231 (433)
.+|......+..+| +.+++++++++ .+..+++. .+++++|+++ +..|... ++.+|.
T Consensus 73 ~t~~~~~~ai~~~G------------~~pv~~Di~~~-~~~id~~~~~~~i~~~t~ai~~~---h~~G~~~---d~~~i~ 133 (363)
T PF01041_consen 73 YTFPATASAILWAG------------AEPVFVDIDPE-TLNIDPEALEKAITPKTKAILVV---HLFGNPA---DMDAIR 133 (363)
T ss_dssp SS-THHHHHHHHTT-------------EEEEE-BETT-TSSB-HHHHHHHHHTTEEEEEEE----GGGB------HHHHH
T ss_pred CcchHHHHHHHHhc------------cEEEEEeccCC-cCCcCHHHHHHHhccCccEEEEe---cCCCCcc---cHHHHH
Confidence 99999999999999 58889998854 44444432 3688998875 4456654 489999
Q ss_pred HHHHHcCCEEEEeccccccc-cCCCCCcccccCCCCcceEEEecc--cccccccccceeeeeccccccccCCcchhHHHH
Q 045431 232 QFAKDNGSIIVYDSAYALYI-SDDNPRSIFEIPGAKEVAIETSSF--SKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFN 308 (433)
Q Consensus 232 ~~a~~~~~~li~De~~~~~~-~~~~~~~~~~~~~~~~~vi~i~S~--sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~ 308 (433)
++|+++|++||+|.+++... +.+ ..+-++ .+ +.+.|| +|.+. .| --|+++++++.+ .+++.
T Consensus 134 ~~~~~~~i~lIeD~a~a~g~~~~g--~~~G~~---gd--~~~fSf~~~K~i~-~g-eGG~v~~~~~~~-------~~~~~ 197 (363)
T PF01041_consen 134 AIARKHGIPLIEDAAQAFGARYKG--RPVGSF---GD--IAIFSFHPTKIIT-TG-EGGAVVTNDPEL-------AERAR 197 (363)
T ss_dssp HHHHHTT-EEEEE-TTTTT-EETT--EETTSS---SS--EEEEESSTTSSS--SS-S-EEEEESTHHH-------HHHHH
T ss_pred HHHHHcCCcEEEccccccCceeCC--EeccCC---CC--ceEecCCCCCCCc-CC-CCeeEEecHHHH-------HHHhh
Confidence 99999999999999999533 222 112222 22 667777 68885 33 248888887664 34444
Q ss_pred HHHhhc-----------------cCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeec-CCCc
Q 045431 309 RIVCTC-----------------FNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYG-GKNA 369 (433)
Q Consensus 309 ~~~~~~-----------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~-~~~g 369 (433)
.+.... ....+.+..+.+..-| +.++...++-+++.+.+.+.|.+. ++.... +...
T Consensus 198 ~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL-----~~L~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~ 272 (363)
T PF01041_consen 198 ALRNHGRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQL-----KRLDEIIARRRENAQRYREALAGIPGIKPPPIPDGA 272 (363)
T ss_dssp HHTBTTEETSECSTTEESSSS--B-B-BHHHHHHHHHHH-----HTHHHHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTT
T ss_pred hhhccCcCccccccccccccCCcccccHHHHHHHHHHHH-----HHhhhhHHHHHHHHHHHHHHHhcCCCcccccccccc
Confidence 333211 1123333333223222 335666667777888888889887 553432 1221
Q ss_pred ----c-EEEEECCCC---ChHHHHHHHHHcCCeEecCCCC--CC------C-----C--C-------CCeEEEee--ccC
Q 045431 370 ----P-YVWVQFPGR---SSWDVFSEILEKTHVVTTPGSG--FG------P-----G--G-------EGFIRVSA--FGH 417 (433)
Q Consensus 370 ----~-~~~~~~~~~---~~~~~~~~l~~~~gi~v~~g~~--f~------~-----~--~-------~~~iRi~~--~~~ 417 (433)
+ .+.+.++.. ...++.+.|. +.||.+.+... +. . . - +..+.|-+ ..+
T Consensus 273 ~~~~~~~f~i~~~~~~~~~rd~l~~~L~-~~GI~~~~~~~~pl~~~~~~~~~~~~~~~~~P~ae~l~~r~l~LP~~~~lt 351 (363)
T PF01041_consen 273 ERSSYYRFPIRLPDEALADRDELVEALR-ARGIETRPHYPKPLHRQPVYRSYPYYAPGDLPNAERLSQRLLSLPIHPRLT 351 (363)
T ss_dssp EEBCESSEEEEETCCGCSTHHHHHHHHH-HTTBEEBCSTSSCGGGSGGGTTGEEEETSSSHHHHHHHHHEEEEEHSTTSC
T ss_pred cccccccccccccccccchHHHHHHHHH-HCCCcccccccCchhhhHHHHhcCccccCCCHHHHHHHhCeEECcCCCCCC
Confidence 1 244555532 4455665555 45999987652 10 0 0 0 12344443 337
Q ss_pred hhHHHHHHHHHH
Q 045431 418 RGNVLEACKRFK 429 (433)
Q Consensus 418 ~~~l~~~l~~l~ 429 (433)
+++++..++.|+
T Consensus 352 ~edv~~I~~~ir 363 (363)
T PF01041_consen 352 EEDVDYIAEAIR 363 (363)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhhccC
Confidence 888888888774
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.2e-12 Score=116.47 Aligned_cols=214 Identities=18% Similarity=0.181 Sum_probs=139.7
Q ss_pred CCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccc
Q 045431 105 QGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYG 183 (433)
Q Consensus 105 ~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~ 183 (433)
+-...|.+.+++.. ...+.++.+++..|+.. +..++.+|++|+....+|.+....++....+-. .
T Consensus 77 Pt~~~le~~iaal~------ga~~~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~g--------i 142 (409)
T KOG0053|consen 77 PTRDVLESGIAALE------GAAHALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFG--------G 142 (409)
T ss_pred CchHHHHHHHHHHh------CCceEEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhC--------c
Confidence 45567777777764 33457888888877775 788999999999999999998777765553210 2
Q ss_pred eEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccC
Q 045431 184 KIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIP 263 (433)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~ 263 (433)
....+..++..++....+ +++++|++-+|.||+..+.+ +++|.++|+++|+++|+|+.++...... |.+ +
T Consensus 143 e~~~vd~~~~~~~~~~i~--~~t~~V~~ESPsNPll~v~D---I~~l~~la~~~g~~vvVDnTf~~p~~~~-pL~---l- 212 (409)
T KOG0053|consen 143 EGDFVDVDDLKKILKAIK--ENTKAVFLESPSNPLLKVPD---IEKLARLAHKYGFLVVVDNTFGSPYNQD-PLP---L- 212 (409)
T ss_pred eeeeechhhHHHHHHhhc--cCceEEEEECCCCCcccccc---HHHHHHHHhhCCCEEEEeCCcCcccccC-hhh---c-
Confidence 455555443333322222 47999999999999999887 7888888889999999999998542211 222 2
Q ss_pred CCCcceEEEecccccccccc--cceeeeecc-ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHH
Q 045431 264 GAKEVAIETSSFSKYAGFTG--VRLGWTVIP-KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHE 340 (433)
Q Consensus 264 ~~~~~vi~i~S~sK~~~~~G--~r~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~ 340 (433)
+-.|++.|.+|.+| +. +=.|.++.+ .++ ..++...+....+..+++...-.. .+.+.+.-
T Consensus 213 ---GADIV~hSaTKyi~-Ghsdvi~G~iv~n~~~~--------~~~l~~~~~~lg~~~~p~~~~ll~-----Rglktl~l 275 (409)
T KOG0053|consen 213 ---GADIVVHSATKYIG-GHSDVIGGSVVLNSEEL--------ASRLKFLQEDLGWCEDPFDLFLLS-----RGLKTLHL 275 (409)
T ss_pred ---CCCEEEEeeeeeec-CCcceeeeEEecCcHHH--------HHHHHHHHHHhcCCCCHHHHHHHh-----cCcchhhh
Confidence 12399999999997 32 224666665 333 356666665555555555433222 33333444
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 045431 341 VIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 341 ~~~~~~~~~~~l~~~l~~~ 359 (433)
+.++-.++...+.+.|+..
T Consensus 276 Ri~~~~ena~~~A~~Le~~ 294 (409)
T KOG0053|consen 276 RINKHSENALKIALLLEAH 294 (409)
T ss_pred hHHHHHHHHHHHHHHhhhC
Confidence 4455556655566666654
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-12 Score=122.61 Aligned_cols=292 Identities=15% Similarity=0.151 Sum_probs=174.3
Q ss_pred CCHHHHHHHHHHHhccCCCCCC--cEEEcCChHHHHHH-HHHhc-CCCCEEEEeCCCChhh-h-hhHHHhCCcccccccc
Q 045431 106 GEKPLRAAIASTFYKDLGIEEG--DIFVSDGAKCDISR-LQIVF-GSNVTMAVQDPSYPAY-V-DSSVIMGQTGEFQKDA 179 (433)
Q Consensus 106 g~~~lr~~la~~l~~~~~~~~~--~i~~~~G~~~al~~-l~~l~-~~gd~Vl~~~p~~~~~-~-~~~~~~g~~~~~~~~~ 179 (433)
...++-+.+.+.|.+-++.+.+ -++++.|++.++++ +..++ ++|++|++.. .|..- . ++++..|..
T Consensus 36 ~F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g-~FG~r~~~eia~~~g~~------- 107 (374)
T TIGR01365 36 LGKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLGCRGVDVLAWE-SFGKGWVTDVTKQLKLP------- 107 (374)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCCCCCCeEEEEC-HHHHHHHHHHHHhcCCC-------
Confidence 4455555555555554455322 36678999999997 68888 5899998865 44332 3 566667731
Q ss_pred cccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcc
Q 045431 180 EKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSI 259 (433)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~ 259 (433)
++..+..+.... .+++.....+.|++++....||+..+. ++++..+ ++.++|+|.+-+.. +.+..+
T Consensus 108 ----~v~~l~~~~g~~--~~~~~ve~~~~v~~vhnETSTGv~npv---~~i~~~~--~~~lliVDavSs~g---~~~l~~ 173 (374)
T TIGR01365 108 ----DVRVLEAEYGKL--PDLKKVDFKNDVVFTWNGTTSGVRVPN---GDFIPAD--REGLTICDATSAAF---AQDLDY 173 (374)
T ss_pred ----CcEEEcCCCCCC--CCHHHcCCCCCEEEecCCCchheeccc---ccccccc--CCCcEEEEccchhc---CCCCCh
Confidence 234443332222 222221111336777888899999884 4444221 58999999987732 223333
Q ss_pred cccCCCCcceEEEecccccccccccceeeeeccccccccCCc--c---hhHHHH---------HHH-hhccCCCcHHHHH
Q 045431 260 FEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGF--P---VAKDFN---------RIV-CTCFNGASNISQA 324 (433)
Q Consensus 260 ~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~--~---~~~~~~---------~~~-~~~~~~~~~~~q~ 324 (433)
.. ..+++.|..|.+++|+ .++++++++..+.+... . ....+. ... ..+.++++.....
T Consensus 174 d~------iDv~~tgsQK~L~~pp-Gls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~ 246 (374)
T TIGR01365 174 HK------LDVVTFSWQKVLGGEG-AHGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVE 246 (374)
T ss_pred hH------CcEEEEechhccCCCC-ceEEEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHH
Confidence 22 2377888899998554 47889999888633110 0 001000 011 2233444555555
Q ss_pred HHHHhcCcCChh-HHHHHHHHHHHHHHHHHHHHhhcC-CeeecC----CCccEEEEECCC--C-----C-----hHHHHH
Q 045431 325 GGLACLSPEGFK-AVHEVIGFYKENTDIIVETFNSLG-FKVYGG----KNAPYVWVQFPG--R-----S-----SWDVFS 386 (433)
Q Consensus 325 ~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~----~~g~~~~~~~~~--~-----~-----~~~~~~ 386 (433)
++..+++....+ .++.+.++++++++.+++.++++| +.+... .+.....+.++. . + ..++..
T Consensus 247 a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~ 326 (374)
T TIGR01365 247 DWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVCLKVVDPAIDALDEDAQADFAKELIS 326 (374)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEEEEeCCccccccccchhhHHHHHHHH
Confidence 555555411111 368999999999999999999998 666542 122345556642 2 1 344444
Q ss_pred HHHHcCCeEecCCCCCCCCCCCeEEEee-c-cChhHHHHHHHHHH
Q 045431 387 EILEKTHVVTTPGSGFGPGGEGFIRVSA-F-GHRGNVLEACKRFK 429 (433)
Q Consensus 387 ~l~~~~gi~v~~g~~f~~~~~~~iRi~~-~-~~~~~l~~~l~~l~ 429 (433)
. ++++||.+.+|.. ......|||+. . .+.++++.+++.|.
T Consensus 327 ~-l~~~gi~i~~G~~--~~~~~~fRIg~~G~i~~~di~~l~~~l~ 368 (374)
T TIGR01365 327 T-LEKEGVAYDIGSY--RDAPSGLRIWCGATVEKSDLECLCPWLD 368 (374)
T ss_pred H-HHHCCEEEecccc--ccCCCceEEecCCcCCHHHHHHHHHHHH
Confidence 4 4556999988764 23347899994 3 48999999999884
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-12 Score=117.71 Aligned_cols=339 Identities=14% Similarity=0.119 Sum_probs=215.9
Q ss_pred CCCceEEecCCCC-CCCChHHHHHHHHHHHhhcc--cCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHH
Q 045431 61 PDAEVISLGIGDT-TEPIPEVITSALAKRSYALS--TQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 61 ~~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~~--~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~ 137 (433)
++.+++||++.+. .+...+++.+.....+.+++ +.....-|+...-..+|.+.||+|+ | .++.|+...|-+.
T Consensus 92 ~G~~~~N~aS~NfL~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~----G-~E~aivYs~gF~t 166 (467)
T KOG1358|consen 92 DGKDVLNFASANFLGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFM----G-TEDAIVYSYGFST 166 (467)
T ss_pred cCceeecccchhhhhhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhh----C-Ccceeeeccccch
Confidence 3567888887775 46677888888888888763 2222335888888899999999998 6 4578999999888
Q ss_pred HHHHHHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCccc---CCC----CCC---Ccc
Q 045431 138 DISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFP---DLS----TVA---RTD 207 (433)
Q Consensus 138 al~~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~---~~~ 207 (433)
.-+.+.++++.||.|.+.+-...+....++..- -.+..+..++..+... +.+ +.+ .++
T Consensus 167 i~S~ipafsKrGDIi~~de~~nfaIq~GlqlSR------------S~i~~Fkhndm~~lerll~E~~~~~~K~~k~~~~R 234 (467)
T KOG1358|consen 167 IESAIPAFSKRGDIIFVDEAVNFAIQKGLQLSR------------STISYFKHNDMEDLERLLPEQEDEDQKNPKKALTR 234 (467)
T ss_pred hhhcchhhhccCcEEEEehhhhHHHHHHHhhhh------------heeEEecCCCHHHHHHhccCcchhhhhccccccce
Confidence 888899999999999998888777666555544 2455665544333211 111 111 233
Q ss_pred EEEEc-CCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCC--CCcceEEEeccccccccccc
Q 045431 208 IIFFC-SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPG--AKEVAIETSSFSKYAGFTGV 284 (433)
Q Consensus 208 ~i~l~-~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~--~~~~vi~i~S~sK~~~~~G~ 284 (433)
-.++. ----+||...+ +.+|+++..||...||.||.|+....+.....+.+-.+ ..+..++++|++-+++..|
T Consensus 235 rfiv~EGl~~N~g~i~p---l~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~alas~G- 310 (467)
T KOG1358|consen 235 RFIVVEGLYANTGDICP---LPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALASGG- 310 (467)
T ss_pred EEEEEEeeccCCCcccc---cHHHHHHHhhheEEEEEecccccccccccCccccccCCCCccceeeeeecccccccccC-
Confidence 33333 33345899888 88999999999999999999985443322222222111 2345588999999998666
Q ss_pred ceeeeeccccccccCCcchhHHHHHH-HhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCe
Q 045431 285 RLGWTVIPKELLFSDGFPVAKDFNRI-VCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFK 362 (433)
Q Consensus 285 r~G~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~ 362 (433)
||++++.-++.+ +++... ...+.. .++....++..++.... +-..+.+.++.+...+.+.|... ++.
T Consensus 311 --gFc~G~~~i~~h------QrLSg~~Y~fSAs-lPp~la~aa~~ai~i~~--~~p~~~~~L~~k~~~~H~~l~~~s~~~ 379 (467)
T KOG1358|consen 311 --GFCAGKSFIADH------QRLSGSGYCFSAS-LPPYLAGAAIKAILIEE--WNPEIVQPLRAKVAKFHAALSSNSGFI 379 (467)
T ss_pred --ceeecceeeEee------eeccccceeeecc-CchhhhhhHHHHHHHHh--hCcchhhhhhccccccchhhhcCCceE
Confidence 888885544311 222211 111112 23333333444443221 22445667777777888888876 788
Q ss_pred eecCCCccEEEEECCC-----CCh----HHHHHHHHHcCCeEecCCCCCC----CCCCCeEEEeec--cChhHHHHHHHH
Q 045431 363 VYGGKNAPYVWVQFPG-----RSS----WDVFSEILEKTHVVTTPGSGFG----PGGEGFIRVSAF--GHRGNVLEACKR 427 (433)
Q Consensus 363 ~~~~~~g~~~~~~~~~-----~~~----~~~~~~l~~~~gi~v~~g~~f~----~~~~~~iRi~~~--~~~~~l~~~l~~ 427 (433)
+....-.+.+.+.+.. ... .+++..++.+ |+.+....... ..-+-.+||++. .++++++++.+.
T Consensus 380 v~~~~~SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~-~~ll~~a~~~~~~e~~~~~pSiri~~~a~~seeel~ra~~~ 458 (467)
T KOG1358|consen 380 VSGSPESPIIHLQLERSYGSREKEEKLLEEIVDKCIAE-GVLLTRAKYLEKLERCPIPPSIRICVSAGMSEEELERAAEL 458 (467)
T ss_pred EecCcCCceeeeeecccccchHHHHHHHHHHHHHHHhh-cceehhhhhhhhcccCCCCCcEEEEEeCCCCHHHHHHHHHH
Confidence 8777677777777763 222 2345555656 77775432211 011335999974 489999999999
Q ss_pred HHHhh
Q 045431 428 FKHLY 432 (433)
Q Consensus 428 l~~~l 432 (433)
|++..
T Consensus 459 ik~~~ 463 (467)
T KOG1358|consen 459 IKEVA 463 (467)
T ss_pred HHHHH
Confidence 98753
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.8e-12 Score=124.06 Aligned_cols=310 Identities=12% Similarity=0.051 Sum_probs=187.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhccCCCCCC-------cEEEcCChHHHHH-HH---HH-hcC-------CCCEEEEeCCC
Q 045431 98 YSGYGAEQGEKPLRAAIASTFYKDLGIEEG-------DIFVSDGAKCDIS-RL---QI-VFG-------SNVTMAVQDPS 158 (433)
Q Consensus 98 ~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~-------~i~~~~G~~~al~-~l---~~-l~~-------~gd~Vl~~~p~ 158 (433)
...|...+...++.+.+.+|+.+.++.+.+ .-++|+|++++.. .+ +. .++ +.-.|++.+-+
T Consensus 111 ~~~~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~a 190 (490)
T PLN02880 111 GFSWITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQT 190 (490)
T ss_pred CcccccCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCc
Confidence 345555668899999999999986666543 3567788777643 33 11 221 12245567788
Q ss_pred ChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCC---C-------CC-CccEEEEcCCCCccccCCCHHHH
Q 045431 159 YPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS---T-------VA-RTDIIFFCSPNNPTGAAATREQL 227 (433)
Q Consensus 159 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------~~-~~~~i~l~~p~nPtG~~~~~~~~ 227 (433)
|.++..++..+|... -.++.+|.+.+++...+++ + .. .+-+|+-+-...+||.+-| +
T Consensus 191 H~Sv~Kaa~~lGlg~---------~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDp---l 258 (490)
T PLN02880 191 HSALQKACQIAGIHP---------ENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDP---L 258 (490)
T ss_pred hHHHHHHHHHcCCCH---------HHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCc---H
Confidence 999999999999521 1477788875333333322 1 11 2344455566888999877 8
Q ss_pred HHHHHHHHHcCCEEEEeccccccccCC-CC-CcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhH
Q 045431 228 TRLVQFAKDNGSIIVYDSAYALYISDD-NP-RSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAK 305 (433)
Q Consensus 228 ~~i~~~a~~~~~~li~De~~~~~~~~~-~~-~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~ 305 (433)
++|.++|++||+++.+|.+|+.+.... .. ..+..+ ..-.-+..+++|++. ....+|++++++.... ..
T Consensus 259 ~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gi---e~aDSit~d~HKwl~-~P~~~g~llvr~~~~l------~~ 328 (490)
T PLN02880 259 LELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGV---EEADSFNMNAHKWFL-TNFDCSLLWVKDRNAL------IQ 328 (490)
T ss_pred HHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCc---hhcCEEEECchhhcC-CCccEEEEEEeCHHHH------HH
Confidence 889999999999999999999754321 11 112222 112266778999995 8888999888753210 00
Q ss_pred HHHH---HHhh-----------ccC---CCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCC
Q 045431 306 DFNR---IVCT-----------CFN---GASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGK 367 (433)
Q Consensus 306 ~~~~---~~~~-----------~~~---~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~ 367 (433)
.+.. +... ... .............++..+.+.+++...+.-+.++++.+.+++. ++++..+.
T Consensus 329 ~~~~~~~Yl~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~ 408 (490)
T PLN02880 329 SLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPR 408 (490)
T ss_pred HHccCHHHhcCccccccCCCChhccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 0000 0000 000 0011111112222444455555666666668888899999876 88887765
Q ss_pred CccEEEEECCCC--C-------hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc---ChhHHHHHHHHHHHhh
Q 045431 368 NAPYVWVQFPGR--S-------SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG---HRGNVLEACKRFKHLY 432 (433)
Q Consensus 368 ~g~~~~~~~~~~--~-------~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~---~~~~l~~~l~~l~~~l 432 (433)
....+.+++++. + ..++.+++.++..+.+.+.. + .+..++|+++.+ ++++++.+++.|.++.
T Consensus 409 ~~~iv~Fr~~~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~t~-~--~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~ 482 (490)
T PLN02880 409 IFSLVCFRLVPPKNNEDNGNKLNHDLLDAVNSSGKIFISHTV-L--SGKYVLRFAVGAPLTEERHVTAAWKVLQDEA 482 (490)
T ss_pred ceEEEEEEEeCCCCChhhHHHHHHHHHHHHHhCCCEEEEEEE-E--CCEEEEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 655667777531 1 13455566655566664432 2 346789999633 5799999999997753
|
|
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.9e-11 Score=113.23 Aligned_cols=331 Identities=15% Similarity=0.134 Sum_probs=196.6
Q ss_pred eEEecCCCCCCCChHHHHHHHHHHHhhccc-CCCCCCCCC-CCCCHHHHHHHHHHHhccCCCCC-CcEE-EcCChHHHHH
Q 045431 65 VISLGIGDTTEPIPEVITSALAKRSYALST-QEGYSGYGA-EQGEKPLRAAIASTFYKDLGIEE-GDIF-VSDGAKCDIS 140 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~Y~~-~~g~~~lr~~la~~l~~~~~~~~-~~i~-~~~G~~~al~ 140 (433)
.++|+.|. -..|++|++++++.+.+... ..++...++ ..-..++-+.+.+.|.+-++++. .+|+ +..|++.++.
T Consensus 5 ~~nF~aGP--a~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~e 82 (364)
T PRK12462 5 QLNFSGGP--GALPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFS 82 (364)
T ss_pred cceecCCC--cCCCHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHH
Confidence 56777774 35789999999988866432 011222211 22334444444444444556632 3565 5555888999
Q ss_pred H-HHHhcCCCCEEE-EeCCCChhhh--hhHHHhCCcccccccccccceEEEeecCccCCcccC---CCCCCCccEEEEcC
Q 045431 141 R-LQIVFGSNVTMA-VQDPSYPAYV--DSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD---LSTVARTDIIFFCS 213 (433)
Q Consensus 141 ~-l~~l~~~gd~Vl-~~~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~l~~ 213 (433)
+ ...++.+||+++ +..-++++-. ..++.+|. ..+.......+.+-.++ ++..++.+.|++|+
T Consensus 83 a~~~Nll~~g~~~~~~~~tG~fg~r~~~ea~~~g~-----------v~~~~~~~~~~~~~~p~~~~~~~~~d~~~v~~t~ 151 (364)
T PRK12462 83 MIPMNFSRPGAAAPEYVTTGYWSRKAIGEASRVAA-----------MRVVWDGAASGYRTLPSLAELDWDARAPFRHYVS 151 (364)
T ss_pred HHHHHcCCCCCcEEEEEeCCHHHHHHHHHHHhcCC-----------ceEecCcCCCCCCcCCCHHHhccCCCCcEEEEcc
Confidence 7 588999999766 5555655532 33333341 12221111111111211 22224677888888
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccc
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPK 293 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~ 293 (433)
....||+.++ ++.+.++.++|+|.+-+.+ +.|..+..+ | +++.|..|.+|.|| ++.+++++
T Consensus 152 NETstGv~~~--------~~~~~~~~llvvD~sS~~~---s~pid~~~~----d--vi~agsQKnlgP~G--ltvvivs~ 212 (364)
T PRK12462 152 NETVEGLQFP--------DAAGLPDSPLIADMSSDFM---SRPFDVEAY----G--MVYAHAQKNLGPAG--VTVAIIRR 212 (364)
T ss_pred CCCCceEecC--------cccccCCCeEEEEcCchhh---CCCCChHHc----c--EEEeeccccCCCCc--eEEEEECH
Confidence 8889999886 2222368999999987732 224444333 2 66667799999778 68899998
Q ss_pred cccccCC---cchhHHHHHHH--hhccCCCcHHHHHHHHHhcCcCChh--HHHHHHHHHHHHHHHHHHHHhhcC-Ceeec
Q 045431 294 ELLFSDG---FPVAKDFNRIV--CTCFNGASNISQAGGLACLSPEGFK--AVHEVIGFYKENTDIIVETFNSLG-FKVYG 365 (433)
Q Consensus 294 ~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~q~~~~~~l~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~ 365 (433)
+.+.+.. +.+.+ +.... ....++++.....++...++-...+ .++.+.++-+++++.+++.+++.. +....
T Consensus 213 ~al~~~~~~~p~~ld-y~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~~~~~ 291 (364)
T PRK12462 213 ALLERVPDTLPPMLD-FRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEVIDCH 291 (364)
T ss_pred HHHhhccccCCchhh-HHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCcccCC
Confidence 8874321 11111 22211 1233455666665555544321112 468888899999999999999873 44321
Q ss_pred ----CCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc--ChhHHHHHHHHHHHhh
Q 045431 366 ----GKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG--HRGNVLEACKRFKHLY 432 (433)
Q Consensus 366 ----~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~--~~~~l~~~l~~l~~~l 432 (433)
..+-+.+.++++.....+.+.+.++++|+.-.-|.. .-+.+|+|+|+ +.+.++.+++-|+++-
T Consensus 292 ~~~~~RS~mnv~f~~~~~~l~~~f~~~a~~~gl~~lkGhr----~vgg~Ras~yna~~~e~v~~L~~fm~~f~ 360 (364)
T PRK12462 292 AHRAARSTMNVAFRFRQPRLDTLFKEQSTEAGFCGLSGHR----SIGGIRASLYNAVSEQAVSRLCAFLKDFA 360 (364)
T ss_pred CChhhcCcceEEEEcCCHHHHHHHHHHHHHCCCccccCCc----ccCceEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 234566778877444344444555667998877653 23569999765 8899999998888753
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.4e-12 Score=121.87 Aligned_cols=312 Identities=14% Similarity=0.113 Sum_probs=171.4
Q ss_pred CChHHHHHHHHHHHhhcccCCCCCCCC---CCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHHHHhcCCCCEE
Q 045431 76 PIPEVITSALAKRSYALSTQEGYSGYG---AEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQIVFGSNVTM 152 (433)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~Y~---~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l~~l~~~gd~V 152 (433)
+.|+.+.+++.+.+..+.+.. ..+. ...-...+++.+++++ +++ ..++++++++++.++...+.+||+|
T Consensus 92 ~l~~~vieAv~~~~~~y~~l~--~~l~~g~~g~r~~~le~~lA~l~----gae--~alvv~sg~aAi~l~l~~l~~GdeV 163 (454)
T TIGR00474 92 PLAEEAIEAVTDAARGYSNLE--YDLETGKRGSRYSHVEGLLCELT----GAE--DALVVNNNAAAVLLALNTLAKGKEV 163 (454)
T ss_pred CCCHHHHHHHHHHHhcccchh--ccccccccchHHHHHHHHHHHHh----CCC--cEEEECCHHHHHHHHHHHhCCcCEE
Confidence 468999999999887643211 0111 0112368888888886 654 2445666777787655668999999
Q ss_pred EEeCCCChhh------hhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC--CCCccEEEEcCCCCcc--cc--
Q 045431 153 AVQDPSYPAY------VDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST--VARTDIIFFCSPNNPT--GA-- 220 (433)
Q Consensus 153 l~~~p~~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~p~nPt--G~-- 220 (433)
++.+..|..+ ....+..| .+++.++.+.... ..++++ .+++++|++.+++||+ |.
T Consensus 164 Ivs~~e~v~~ggs~~i~~~~~~~G------------~~~~~v~~~~~~~-l~dle~aI~~~T~lv~~~h~sN~~~~G~~~ 230 (454)
T TIGR00474 164 IVSRGELVEIGGSFRIPDVMEQSG------------AKLVEVGTTNRTH-LKDYEDAITENTALLLKVHTSNYRIVGFTE 230 (454)
T ss_pred EECCChhhhhcchhhHHHHHHHcC------------CEEEEeCCCCCCC-HHHHHHhcCcCCEEEEEEccCcccccCCCC
Confidence 9998775322 22334445 3666666532211 122222 4689999999999995 63
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEeccccccccCC-----CCCcccccCCCCcceEEEecccccccccccceeeeeccccc
Q 045431 221 AATREQLTRLVQFAKDNGSIIVYDSAYALYISDD-----NPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKEL 295 (433)
Q Consensus 221 ~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~-----~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~ 295 (433)
..+ +++|+++|++||+++++|...+.+...+ ..+.+..... .+..+++.|.+|++|-| ..|++++++++
T Consensus 231 ~~d---l~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~-~GaDiv~fSg~K~LgGp--~~G~i~g~~~~ 304 (454)
T TIGR00474 231 EVS---IAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIA-AGVDLVTFSGDKLLGGP--QAGIIVGKKEL 304 (454)
T ss_pred CCC---HHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhH-cCCCEEEecCccccCCC--eEEEEEECHHH
Confidence 555 8899999999999999998643221100 0011111111 12348899999998533 48999999877
Q ss_pred cccCCcchhHHHHHHHhhccCCCcHHHH---HHHH-HhcC-------cCChhHHHHHHHHHHHHHHHHHHHHhhc---CC
Q 045431 296 LFSDGFPVAKDFNRIVCTCFNGASNISQ---AGGL-ACLS-------PEGFKAVHEVIGFYKENTDIIVETFNSL---GF 361 (433)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q---~~~~-~~l~-------~~~~~~~~~~~~~~~~~~~~l~~~l~~~---g~ 361 (433)
+ +.+................ .+++ .++. ..+.+.+....++.+++...+.+.|++. ++
T Consensus 305 i--------~~l~~~~l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~ 376 (454)
T TIGR00474 305 I--------ERLKKNPLTRALRVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEELRARAERLAKRLKAALGPGF 376 (454)
T ss_pred H--------HhhhhchhHHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHHHHHHHHHHHHHHHhhccCCc
Confidence 5 2211100000000111111 1111 1111 1112333444456667777788888663 22
Q ss_pred --eeecCC----C---------ccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee-ccChhHHHHHH
Q 045431 362 --KVYGGK----N---------APYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA-FGHRGNVLEAC 425 (433)
Q Consensus 362 --~~~~~~----~---------g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~-~~~~~~l~~~l 425 (433)
++.... + +..+.++..+....++.. .+++....+.. ...++.+.+.+ +..++|++..+
T Consensus 377 ~~~~~~~~~~~ggg~~p~~~l~~~~v~~~~~~~~~~~l~~-~lr~~~~~ii~-----r~~~~~~~ld~r~~~~~~~~~~~ 450 (454)
T TIGR00474 377 ELEIVPGLSQVGGGSLPDERLPSYAVTLTPDGLSAEKLEA-RLRELPPPIIG-----RIEDDRFLLDLRTLLEDEEELLI 450 (454)
T ss_pred eEEEEEcCCcccCCCCcCCCCCeEEEEEecCCCCHHHHHH-HHhcCCCCEEE-----EEECCEEEEEeCcCCHHHHHHHH
Confidence 333221 1 112333333444455544 45554533321 12356777776 34788888887
Q ss_pred HHH
Q 045431 426 KRF 428 (433)
Q Consensus 426 ~~l 428 (433)
++|
T Consensus 451 ~~~ 453 (454)
T TIGR00474 451 EAL 453 (454)
T ss_pred HHh
Confidence 765
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.1e-11 Score=117.76 Aligned_cols=351 Identities=10% Similarity=0.058 Sum_probs=183.8
Q ss_pred HHHHHHHhcC-CCCceEEecCCCCC--C-CChHHHH--HHHHHHHhhccc-CCCCCCCCCCCCCHHHHHHHHHHHhccC-
Q 045431 51 RRKAAHMLKY-PDAEVISLGIGDTT--E-PIPEVIT--SALAKRSYALST-QEGYSGYGAEQGEKPLRAAIASTFYKDL- 122 (433)
Q Consensus 51 ~~~~~~~~~~-~~~~~i~l~~g~~~--~-~~~~~~~--~a~~~~~~~~~~-~~~~~~Y~~~~g~~~lr~~la~~l~~~~- 122 (433)
+..+...... +++..||+..|... + ..+|.+. +++.+++.+... ......+ ..++ ...+++.+.+..
T Consensus 25 ~a~G~~l~D~~dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~q~~~~~~~~~~~~~~----~~~~-~~~l~~~l~~~~~ 99 (431)
T TIGR03251 25 RSRGSVLVDARDGRRYLDMFSFFASMALGMNHPALVDDLAFRARLGAAAVNKPSNSDV----YTVA-MARFVDTFARVLG 99 (431)
T ss_pred eccCCEEEECCCCCChhhcccChhhcCCCCCChhhhHHHHHHHHHHHhhhcccccCCC----CCHH-HHHHHHHHHHhcC
Confidence 3444444553 67788998766432 2 3567887 888888875310 0011111 1222 233443333211
Q ss_pred CCCCCcEEEcCChHHHHHHHHHhc----C-----------CCCEEEEeCCCChhhhhhHHHh-CCccccccccccc----
Q 045431 123 GIEEGDIFVSDGAKCDISRLQIVF----G-----------SNVTMAVQDPSYPAYVDSSVIM-GQTGEFQKDAEKY---- 182 (433)
Q Consensus 123 ~~~~~~i~~~~G~~~al~~l~~l~----~-----------~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~---- 182 (433)
.-..+.+++++++++|+.....+. . .+.+|+..+-+|++........ |.......+....
T Consensus 100 ~~~~~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~ 179 (431)
T TIGR03251 100 DPALPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPR 179 (431)
T ss_pred CCCcCEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCcc
Confidence 113468999999999988532221 1 1367999998898865444333 2111100000000
Q ss_pred ceEE--EeecCccC-C-c----ccCC-------CC-CCCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCCEEEEe
Q 045431 183 GKIE--YMRCTAEN-G-F----FPDL-------ST-VARTDIIFFCSP-NNPTGAA-ATREQLTRLVQFAKDNGSIIVYD 244 (433)
Q Consensus 183 ~~~~--~~~~~~~~-~-~----~~~~-------~~-~~~~~~i~l~~p-~nPtG~~-~~~~~~~~i~~~a~~~~~~li~D 244 (433)
.... ..+.+.+. . . ..++ +. ..++.++++ .| +.-.|.. .+++.+++|.++|++||+++|.|
T Consensus 180 ~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAaviv-EPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~D 258 (431)
T TIGR03251 180 IDNPKLTFPLDAPNLDQVIALEEEALRQARAAFAERPHDIACFIA-EPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFD 258 (431)
T ss_pred CCCCcccCCccccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEE-eccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 0000 01111000 0 0 0001 11 245666555 45 5556754 57889999999999999999999
Q ss_pred ccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhH-HHH-HHHhhccCCCcHHH
Q 045431 245 SAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAK-DFN-RIVCTCFNGASNIS 322 (433)
Q Consensus 245 e~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~ 322 (433)
|++.++...|.......++-.+| ++ +++|.+. . .|++.. +++.. +.. .+. .....++.+.++++
T Consensus 259 EV~tG~GrtG~~~a~~~~gv~PD-i~---~~gK~~~-~---~g~~~~-~~i~~-----~~~~~~~~~~~~~~T~~gnpl~ 324 (431)
T TIGR03251 259 EVQTGVGLTGTAWAYQQLGVQPD-IV---AFGKKTQ-V---CGIMAG-RRVDE-----VADNVFAVPSRLNSTWGGNLVD 324 (431)
T ss_pred cchhccCccchHHHHHhcCCCCC-EE---EecccCc-c---ceEEec-chHHH-----hhhhcccCccccCCCCCCCHHH
Confidence 99998765544322222322344 23 4788762 2 255543 33210 000 000 01133445577888
Q ss_pred HHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhh----cC-CeeecCCCccEEEEECCCCCh-HHHHHHHHHcCCeEe
Q 045431 323 QAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNS----LG-FKVYGGKNAPYVWVQFPGRSS-WDVFSEILEKTHVVT 396 (433)
Q Consensus 323 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~g-~~~~~~~~g~~~~~~~~~~~~-~~~~~~l~~~~gi~v 396 (433)
.+++.+.|+.... +...++.+++-+++.+.|++ +. +.......|.++.+.++.... ..+...++ ++||.+
T Consensus 325 ~aaa~a~L~~l~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~l~-~~Gvl~ 400 (431)
T TIGR03251 325 MVRATRILEIIEE---ERLVDNARVQGAHLLARLHELAAEFPHLVSNPRGRGLMCAFDLPSTADRDEVIRQLY-REGVLL 400 (431)
T ss_pred HHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCccceecccccceeEEEEeCCHHHHHHHHHHHH-hCCeEE
Confidence 8888887763211 12223334444444444433 32 221111246777777764322 34555555 559999
Q ss_pred cCCCCCCCCCCCeEEEe--eccChhHHHHHHHHHHHh
Q 045431 397 TPGSGFGPGGEGFIRVS--AFGHRGNVLEACKRFKHL 431 (433)
Q Consensus 397 ~~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~ 431 (433)
.|.. .+.+||+ ++.+++|+++++++|.++
T Consensus 401 ~~~g------~~~lr~~P~l~~t~~eid~~l~~l~~~ 431 (431)
T TIGR03251 401 LGCG------ERSIRFRPPLTVTREEIDAAIDAIRRV 431 (431)
T ss_pred ecCC------CCeEEEECCccCCHHHHHHHHHHHHhC
Confidence 7642 3568887 577999999999999763
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.7e-12 Score=125.14 Aligned_cols=343 Identities=14% Similarity=0.091 Sum_probs=175.9
Q ss_pred HHHHHHhcCCCCceEEecCCCC--CC-CChHHHHHHHHHHHhhcccCCCCCCCC-CCCCCHHHHHHHHHHHhccCCCCCC
Q 045431 52 RKAAHMLKYPDAEVISLGIGDT--TE-PIPEVITSALAKRSYALSTQEGYSGYG-AEQGEKPLRAAIASTFYKDLGIEEG 127 (433)
Q Consensus 52 ~~~~~~~~~~~~~~i~l~~g~~--~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~-~~~g~~~lr~~la~~l~~~~~~~~~ 127 (433)
..+......+++..||+..|.. .+ ..+|.+.+++.+++.+.. .++ +.....+|-+.|++.+ + ..+
T Consensus 37 ~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~------~~~~~~~~~~~la~~l~~~~----p-~~~ 105 (431)
T PRK06209 37 GSGAHVWDVDGNEYIEYGMGLRAVGLGHAYPPVVEAVREALQDGC------NFTRPSAIELDAAESFLELI----D-GAD 105 (431)
T ss_pred ccCCEEEeCCCCEEEEccccccchhcCCCCHHHHHHHHHHHHhCc------CCCCCCHHHHHHHHHHHHhC----C-ccc
Confidence 3444445566788999976642 22 367899999999987532 121 1111123444444432 2 236
Q ss_pred cEEEcCChHHHHHHHHHh---cCCCCEEEEe-CCCChhhhhhHHHhCCccccc-ccccccceEEEeecCccCCcccCCCC
Q 045431 128 DIFVSDGAKCDISRLQIV---FGSNVTMAVQ-DPSYPAYVDSSVIMGQTGEFQ-KDAEKYGKIEYMRCTAENGFFPDLST 202 (433)
Q Consensus 128 ~i~~~~G~~~al~~l~~l---~~~gd~Vl~~-~p~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (433)
.+++++++++|......+ .....+|+.. .-+|.+..... .|...... ...........++.++-..+...++.
T Consensus 106 ~v~f~~sGseA~e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~ 183 (431)
T PRK06209 106 MVKFCKNGSDATSAAVRLARAYTGRDLVARCADHPFFSTDDWF--IGTTPMSAGIPASVSALTVTFRYNDIASLEALFED 183 (431)
T ss_pred eEEEecCHHHHHHHHHHHHHHHhCCCeEEEeccCccccccccc--cccCCCCCCCChhHhccccccCCCCHHHHHHHHHh
Confidence 899999999998863222 2223455544 23333211111 01000000 00000001122222211111111111
Q ss_pred C-CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccc-cCCCCcceEEEeccccccc
Q 045431 203 V-ARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFE-IPGAKEVAIETSSFSKYAG 280 (433)
Q Consensus 203 ~-~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~-~~~~~~~vi~i~S~sK~~~ 280 (433)
. .++.+ +++.|- .|...+.+.+++|.++|++||+++|+||++..+...+ ....+ +.-.+| +.+++|.+|
T Consensus 184 ~~~~~aa-vi~Epv--~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~--~g~~~~~gv~PD----i~t~gK~lg 254 (431)
T PRK06209 184 HPGRIAC-VILEPA--TADEPQDGFLHEVRRLCHENGALFILDEMITGFRWHM--RGAQKLYGIVPD----LSCFGKALG 254 (431)
T ss_pred CCCCEEE-EEEccc--cCCCCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCc--chhhHHhCCCcc----eeeehhhhc
Confidence 1 23444 445563 3557788999999999999999999999997663321 11111 221233 367899998
Q ss_pred ccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhh--
Q 045431 281 FTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNS-- 358 (433)
Q Consensus 281 ~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~-- 358 (433)
.|+.+|+++++++++..........-..+...++.++++++.+++.+.|+.... +.+.++++++.+++.+.|++
T Consensus 255 -gG~p~~av~~~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~---~~~~~~~~~~g~~l~~~L~~~~ 330 (431)
T PRK06209 255 -NGFAVSALAGKREYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRD---EDVIERLHEQGAKLAAGVNEAA 330 (431)
T ss_pred -CCcccEEEEEHHHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHHHHHHHH
Confidence 889999999988775110000000000011234445566777777766652211 12344444555555555443
Q ss_pred --cCCee-ecCCCccEEEEEC--C--CCChH----HHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHH
Q 045431 359 --LGFKV-YGGKNAPYVWVQF--P--GRSSW----DVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKR 427 (433)
Q Consensus 359 --~g~~~-~~~~~g~~~~~~~--~--~~~~~----~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~ 427 (433)
+++.. +...+.+....-+ . +.... .+...+++ .||.+.| ++|+...+++++++++++
T Consensus 331 ~~~~~~~~vr~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~p~-----------l~is~~ht~~dId~~l~~ 398 (431)
T PRK06209 331 AEHGLQDHVRVSGRPCCLTYSTLDGNGQPSQAFRTLFLQETIR-RGVLMPS-----------LVVSYAHGDADIERTIDA 398 (431)
T ss_pred HhCCCCeEEEeecceEEEEEecCCcccCCcHHHHHHHHHHHHH-CCccccc-----------ccccccCCHHHHHHHHHH
Confidence 44432 1112322222211 1 11111 34455544 5997622 567777799999999999
Q ss_pred HHHhh
Q 045431 428 FKHLY 432 (433)
Q Consensus 428 l~~~l 432 (433)
|.+++
T Consensus 399 l~~~l 403 (431)
T PRK06209 399 VHGAL 403 (431)
T ss_pred HHHHH
Confidence 98876
|
|
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.9e-11 Score=111.42 Aligned_cols=298 Identities=13% Similarity=0.109 Sum_probs=172.3
Q ss_pred cCCCCceEEecCCCCC---CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCCh
Q 045431 59 KYPDAEVISLGIGDTT---EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGA 135 (433)
Q Consensus 59 ~~~~~~~i~l~~g~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~ 135 (433)
+.++.+.||+..+.-. -+..|++.+++.+.+.+.. .....|.... .-+|.+.+.+.+.+ -.++.|++.+++
T Consensus 52 D~~g~EyiD~~ssw~~~~~Ghanpev~ral~~q~~k~~--hs~~~~~t~e-av~l~~~l~~~~~~---~~~~rvff~nsG 125 (433)
T KOG1401|consen 52 DPDGKEYIDFTSSWAVTILGHANPEVARALAEQAKKLG--HSSNGYFTLE-AVELEEVLSAVLGK---GSAERVFFCNSG 125 (433)
T ss_pred cCCcceeeeeccceeccccCCCCHHHHHHHHHHHhhhe--eccCccccHH-HHHHHHHHHhcccC---CCccEEEEecCC
Confidence 3456678998766521 2357999999999988764 2233332211 33444444443321 167899999999
Q ss_pred HHHHHH-H---HHhcCCC---C--EEEEeCCCChhhh-hhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-CC
Q 045431 136 KCDISR-L---QIVFGSN---V--TMAVQDPSYPAYV-DSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-VA 204 (433)
Q Consensus 136 ~~al~~-l---~~l~~~g---d--~Vl~~~p~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 204 (433)
++|... | +.....+ + .|+..+.+|++-. .++...+....-.++......++....++...+..-++. ..
T Consensus 126 TeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~ynd~t~l~k~~~~h~~ 205 (433)
T KOG1401|consen 126 TEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEYNDSTALEKLFESHKG 205 (433)
T ss_pred cHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeecccCCHHHHHHHHHhCCC
Confidence 999875 4 2222222 2 3788888887643 333333321110111110111122221110000000111 12
Q ss_pred CccEEEEcCC-CCccccCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccc
Q 045431 205 RTDIIFFCSP-NNPTGAAA-TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFT 282 (433)
Q Consensus 205 ~~~~i~l~~p-~nPtG~~~-~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~ 282 (433)
.+.++++ .| +.-.|..+ +++.+..|.+.|+++|+++|.||++.+|...+.......+...+| |.++.|.++ .
T Consensus 206 ~IaAVIv-EPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a~e~~~~~PD----I~t~aK~L~-g 279 (433)
T KOG1401|consen 206 EIAAVIV-EPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQEYFGVTPD----ITTVAKPLG-G 279 (433)
T ss_pred ceEEEEE-ecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHHHHHHhCcCCc----ceeehhhcc-C
Confidence 4555554 66 66667554 788899999999999999999999998776654221111222344 457899998 9
Q ss_pred ccceeeeeccccccccCCcchhHHHHH---HHhhccCCCcHHHHHHHHHhcCcCCh-hHHHHHHHHHHHHHHHHHHHHhh
Q 045431 283 GVRLGWTVIPKELLFSDGFPVAKDFNR---IVCTCFNGASNISQAGGLACLSPEGF-KAVHEVIGFYKENTDIIVETFNS 358 (433)
Q Consensus 283 G~r~G~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~ 358 (433)
|+.+|...+++.+. +.+.. +.+.++.+.++++..++...++.... ++++++.+.-+..++.+.+.+.+
T Consensus 280 GlPigA~~v~~kV~--------~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~~e~~k~vs~~~k~L~~~l~e~~~~ 351 (433)
T KOG1401|consen 280 GLPIGATGVRDKVA--------EMISPGDHLYHGGTFSGNPLACSAGIKVLDELKDPETLKNVSKIGKELRKLLDEYLKK 351 (433)
T ss_pred CceeEEEeehHHHH--------hhcCCCCccccCcccCCChhhhhHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999998884 33221 34466677889998888888774433 45666666666666777777765
Q ss_pred cCCeeec-CCCccEEEEEC
Q 045431 359 LGFKVYG-GKNAPYVWVQF 376 (433)
Q Consensus 359 ~g~~~~~-~~~g~~~~~~~ 376 (433)
..-.... -..++++.+.+
T Consensus 352 ~~~~i~g~~grgl~ig~~~ 370 (433)
T KOG1401|consen 352 TPNSICGGVGRGLVIGFEF 370 (433)
T ss_pred CCCceeeeeeeEEEEEEEE
Confidence 4222211 23455555444
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.1e-14 Score=128.19 Aligned_cols=256 Identities=15% Similarity=0.165 Sum_probs=153.5
Q ss_pred ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEe
Q 045431 77 IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQ 155 (433)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~ 155 (433)
+.+.+++++.++.. +...|+.+....+|++.+++.+ +.+ ..+++.+++.+..+ +..+++|++.|++.
T Consensus 7 ~~~~m~~a~~~a~~------gd~~Yg~D~~~~~l~~~i~~l~----g~e--~a~f~~sGT~An~~al~~~~~~~~~vi~~ 74 (290)
T PF01212_consen 7 PTPAMLEAMAAANV------GDDAYGEDPTTARLEERIAELF----GKE--AALFVPSGTMANQLALRAHLRPGESVICA 74 (290)
T ss_dssp S-HHEEHHHHHTTS------B-CCTTSSHHHHHHHHHHHHHH----TSS--EEEEESSHHHHHHHHHHHHHHTTEEEEEE
T ss_pred CCHHHHHHHHcccc------CCcccCCChhHHHHHHHHHHHc----CCC--EEEEeCCCChHHHHHHHHHHhcCCceecc
Confidence 56777788854432 2236988888999999999987 543 34566666666655 78888999999999
Q ss_pred CCCChhhhhhH---HHhCCcccccccccccceEEEeecCccCCcccC-CCC--------CCCccEEEEcCCCCcc-ccCC
Q 045431 156 DPSYPAYVDSS---VIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--------VARTDIIFFCSPNNPT-GAAA 222 (433)
Q Consensus 156 ~p~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------~~~~~~i~l~~p~nPt-G~~~ 222 (433)
+++|....+.- ...| .+++.++.+.++.+.++ ++. ..++++|+|++|+|.. |+++
T Consensus 75 ~~aHi~~~E~ga~~~~~G------------~~~~~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~ 142 (290)
T PF01212_consen 75 DTAHIHFDETGAIEELSG------------AKLIPLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVY 142 (290)
T ss_dssp TTEHHHHSSTTHHHHHTT------------CEEEEEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB--
T ss_pred ccceeeeeccchhhHhcC------------cEEEECCCcccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeC
Confidence 99886543322 3345 46777776553333332 221 1568999999998853 8999
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcc
Q 045431 223 TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFP 302 (433)
Q Consensus 223 ~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~ 302 (433)
|.+++++|.++|++||+.++.|.+--.-.......++.++...-| ++.-|++|.+++++ -+.++++++++.+
T Consensus 143 s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~~~~D--~v~~~~tK~~g~~~--Gavl~~~~~~i~~---- 214 (290)
T PF01212_consen 143 SLEELRAISELAREHGLPLHMDGARLANAAAALGVSLAEIAAGAD--SVSFGGTKNGGAPG--GAVLAGNKEFIAK---- 214 (290)
T ss_dssp -HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHHHHHHTTSS--EEEEETTSTT-SSS--EEEEEESHHHHHH----
T ss_pred CHHHHHHHHHHHHhCceEEEEehhhHHHhhhcccccHHHHhhhCC--EEEEEEEccccccc--ceEEEechHHHHH----
Confidence 999999999999999999999998532111111122333322223 45557999887655 3677788886521
Q ss_pred hhHHHHHHHhhccCCCcHHHH-----HHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCcc
Q 045431 303 VAKDFNRIVCTCFNGASNISQ-----AGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAP 370 (433)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~q-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~ 370 (433)
...+.+...........+.. .++...++.. .....+..++.+.+.+.|+.++..+..+..++
T Consensus 215 -~~~~~k~~gg~~~~~G~~~a~~~~~~~~l~~l~~~-----~~~~~~~~~~A~~La~~l~~~~~~~~~~~~tn 281 (290)
T PF01212_consen 215 -ARRQRKRLGGGMRQAGVLAAAELYQFAALRALELW-----LERARHANAMAKRLAAGLEALGGVLPRPVETN 281 (290)
T ss_dssp -HHHHHHHHTHHHHHTTHHHHHHHHHHHHHCHEECS-----HHHHHCHHHHHHCHHHCHHEECEEEETTSS-H
T ss_pred -HHHHHHHhccCeeecceeeeechhhHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHCCCcccCCCCCc
Confidence 11122211111111112222 2334344322 34456667778889999999887766554444
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.9e-11 Score=117.82 Aligned_cols=230 Identities=15% Similarity=0.164 Sum_probs=139.0
Q ss_pred CHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceE
Q 045431 107 EKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKI 185 (433)
Q Consensus 107 ~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 185 (433)
..+..+..|+.+ +.+ .--++++|++.++.+ +.+++.+||.|+++++||.+..+.+.++|+.++
T Consensus 72 i~eAqe~aA~~f----gAd-~tyFvvNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi~~glilaGa~Pv----------- 135 (557)
T COG1982 72 IKEAQELAARVF----GAD-HTYFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIHHGLILAGATPV----------- 135 (557)
T ss_pred HHHHHHHHHHHh----CCC-ceEEEECCccHHHHHHHHhhcCCCCEEEecCCccHHHHHHHHHcCCceE-----------
Confidence 345555555554 543 467899999999987 699999999999999999999999999996443
Q ss_pred EEeecCccC------Cc-----ccCCCCCCCc-cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccC
Q 045431 186 EYMRCTAEN------GF-----FPDLSTVART-DIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISD 253 (433)
Q Consensus 186 ~~~~~~~~~------~~-----~~~~~~~~~~-~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~ 253 (433)
++....+. ++ ...+.+.+.. |+++++||.+ .|++++ .++|.+++.++++++.+|+++......
T Consensus 136 -yl~p~~np~~gi~ggI~~~~~~~~l~~~~~~~k~~vitnpTY-dGv~~n---~~~i~~~~~~~~a~v~~deah~~~~~~ 210 (557)
T COG1982 136 -YLEPSRNPLYGIIGGIPLETFKEALLAHPDAEKLAVITNPTY-DGVCYN---LRKIVELLHHYGAWVLYDEAHPAHFDF 210 (557)
T ss_pred -EecCCCCccccccCCCCHHHHHHHHHhChhhheeEEEecCcc-ceEeec---HHHHHHHHhhcCceEEhhhcCcccccc
Confidence 22221111 11 1112223455 8888888866 799999 788888899999999999999853222
Q ss_pred CCCCcccccCCCCcceEEEecccccccccccceeeeecccc-ccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHh---
Q 045431 254 DNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKE-LLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLAC--- 329 (433)
Q Consensus 254 ~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~--- 329 (433)
....+-... ....+++.-|.+|.++ +.-...++..... .+. .+++........++++.....|++..
T Consensus 211 ~~~l~~~~~--~~~~~~~tqS~HK~l~-alSQaS~iHv~~~~~~~------~~r~nea~~~h~STSPsY~l~ASlD~Ar~ 281 (557)
T COG1982 211 SPMLPESAL--NGGADFVTQSTHKLLA-ALSQASMIHVKDGRAVN------HERFNEALMMHQSTSPSYPLMASLDVARM 281 (557)
T ss_pred cccCcchhh--hcCceEEEechhhhhh-hhhhhHHHhhCCCccCC------HHHHHHHHHHHccCCchHHHHHHHHHHHH
Confidence 221212222 1345688999999985 4444557777752 221 24454433333333333333333332
Q ss_pred -cCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecC
Q 045431 330 -LSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGG 366 (433)
Q Consensus 330 -l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~ 366 (433)
....+....++..+..-+.++.+.+.+.+. ++.+..+
T Consensus 282 ~~~~~G~~l~~~~~~~~i~~r~~~~~~~~~~~~~~~~~~ 320 (557)
T COG1982 282 QEGNAGRELWQEVIDEAIDFRKALRRLINEIGFFPVLQP 320 (557)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccc
Confidence 222222222333445555566666666665 4555433
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.6e-11 Score=123.82 Aligned_cols=207 Identities=11% Similarity=0.079 Sum_probs=134.6
Q ss_pred CccEEEEcCC--CCccccCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccc
Q 045431 205 RTDIIFFCSP--NNPTGAAA-TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGF 281 (433)
Q Consensus 205 ~~~~i~l~~p--~nPtG~~~-~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~ 281 (433)
++.+ ++..| +.-.|+.+ +++.++++.++|++||+++|.||++.+|...|.......+...+| |-+++|.++
T Consensus 584 ~iAA-vI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~gv~PD----Ii~~gKgLt- 657 (817)
T PLN02974 584 HIAA-LIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLGCKPD----IACYAKLLT- 657 (817)
T ss_pred CEEE-EEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHHhcCCCCC----EEeeccccc-
Confidence 3444 44566 57778765 688999999999999999999999999877776444333433355 336899998
Q ss_pred cc-cceeeeeccccccccCCcchhHHHH------HHHhhccCCCcHHHHHHHHHhcCcCCh-hHHHHHHHHHHHHHHHHH
Q 045431 282 TG-VRLGWTVIPKELLFSDGFPVAKDFN------RIVCTCFNGASNISQAGGLACLSPEGF-KAVHEVIGFYKENTDIIV 353 (433)
Q Consensus 282 ~G-~r~G~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~ 353 (433)
.| +.+|.+++++++. +.+. .+.+..+.+.++++.+++.+.|+.... +..+++.+..++..+.+.
T Consensus 658 gG~~Plaa~l~~~~I~--------~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~~~~~l~~~~~~l~~~l~ 729 (817)
T PLN02974 658 GGLVPLAATLATEEVF--------EAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDPSTNPNLIPPGSRLRELWD 729 (817)
T ss_pred CCCCccEEEEEcHHHH--------HhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 88 6999999998885 3332 123556677889999988887762211 122333444444444444
Q ss_pred HHH----hhcC-CeeecCCCccEEEEECCCCC---------hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe--eccC
Q 045431 354 ETF----NSLG-FKVYGGKNAPYVWVQFPGRS---------SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS--AFGH 417 (433)
Q Consensus 354 ~~l----~~~g-~~~~~~~~g~~~~~~~~~~~---------~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~ 417 (433)
+.| .++. +.-+.. -|.++-+.+.... ...+...++.++||.++|. .+.+++. ...+
T Consensus 730 ~~l~~~l~~~p~V~~VRg-~Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~-------Gnvi~l~pP~~i~ 801 (817)
T PLN02974 730 EELVRAISSLPNVERVVS-LGTVLALELDAEGSGSGYSSLYARSVVRRLRREDGIYARPL-------GNVVYLMCGPTTS 801 (817)
T ss_pred HHHHHHHhhCCCeeEEEe-eeeEEEEEEecCCcccccchHHHHHHHHHHHHhCCEEEEec-------CCEEEEeCCCCCC
Confidence 333 3332 222222 4566666664211 1234555552569999873 1578875 5679
Q ss_pred hhHHHHHHHHHHHhhC
Q 045431 418 RGNVLEACKRFKHLYK 433 (433)
Q Consensus 418 ~~~l~~~l~~l~~~l~ 433 (433)
++++++++++|.+.|.
T Consensus 802 ~e~l~~~~~~l~~~~~ 817 (817)
T PLN02974 802 PETCTRLLRKVYRRLS 817 (817)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999998763
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-10 Score=114.01 Aligned_cols=316 Identities=11% Similarity=0.049 Sum_probs=187.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhccCCCCCC-------cEEEcCChHHHHH-HH---HH-hcC-------CCCEEEEeCC
Q 045431 97 GYSGYGAEQGEKPLRAAIASTFYKDLGIEEG-------DIFVSDGAKCDIS-RL---QI-VFG-------SNVTMAVQDP 157 (433)
Q Consensus 97 ~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~-------~i~~~~G~~~al~-~l---~~-l~~-------~gd~Vl~~~p 157 (433)
....|...++..++.+.+.+|+.+.++.+.+ .=++++|++++.. .+ +. .++ +.-.|.+.+.
T Consensus 158 ~~~~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~ 237 (539)
T PLN02590 158 VGFTWLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQ 237 (539)
T ss_pred ccCCcccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCC
Confidence 3456667788999999999999986666542 2456777776643 33 11 121 1224556788
Q ss_pred CChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCC-----------CCccEEEEcCCCCccccCCCHHH
Q 045431 158 SYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV-----------ARTDIIFFCSPNNPTGAAATREQ 226 (433)
Q Consensus 158 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~i~l~~p~nPtG~~~~~~~ 226 (433)
+|.++..++..+|... .+++.+|++..+.+..+++.. ..+-+|+-+-...+||.+=+
T Consensus 238 aH~Sv~KAa~ilGlg~---------~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDp--- 305 (539)
T PLN02590 238 THSSFRKACLIGGIHE---------ENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDP--- 305 (539)
T ss_pred chHHHHHHHHHcCCCc---------ccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCC---
Confidence 8999999999988521 157788887433333332210 12334454566778888544
Q ss_pred HHHHHHHHHHcCCEEEEeccccccccCC-CCC-cccccCCCCcceEEEecccccccccccceeeeeccccccccCCcchh
Q 045431 227 LTRLVQFAKDNGSIIVYDSAYALYISDD-NPR-SIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVA 304 (433)
Q Consensus 227 ~~~i~~~a~~~~~~li~De~~~~~~~~~-~~~-~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~ 304 (433)
+++|.++|++||+++.+|.+|+.+..-. ... -+..++.. | -+...++|++. ....+|.+++++.-.........
T Consensus 306 l~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~A-D--Sit~D~HK~l~-~p~~cg~llvr~~~~l~~a~~~~ 381 (539)
T PLN02590 306 LVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENA-D--SFNMNAHKWLF-ANQTCSPLWVKDRYSLIDALKTN 381 (539)
T ss_pred HHHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCCccC-C--EEEECchhhcC-cCcCEEEEEecCHHHHHHHhhcC
Confidence 8999999999999999999999754321 111 11222221 1 33557899995 77889988877642100000000
Q ss_pred HHHHHH-----------HhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCCccEE
Q 045431 305 KDFNRI-----------VCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAPYV 372 (433)
Q Consensus 305 ~~~~~~-----------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~ 372 (433)
..+... ...+...+-..........|+..+.+.++++.++.-+.++++.+.+++. +++++.+..-..+
T Consensus 382 ~~YL~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~l~iV 461 (539)
T PLN02590 382 PEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLV 461 (539)
T ss_pred HHHhCCcccccccCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceEEE
Confidence 001000 0000011111222223344444455667888888888999999999887 7888776555556
Q ss_pred EEECCC--CC-------hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc---ChhHHHHHHHHHHHh
Q 045431 373 WVQFPG--RS-------SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG---HRGNVLEACKRFKHL 431 (433)
Q Consensus 373 ~~~~~~--~~-------~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~---~~~~l~~~l~~l~~~ 431 (433)
.+++.+ .. ..++.+++.+...+.+.+ .. -.+..++|+++.+ ++++++.+++.|.+.
T Consensus 462 cFr~~~~~~~~~~~~~ln~~l~~~l~~~G~~~vs~-t~--~~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~ 529 (539)
T PLN02590 462 CFRLAPVDGDEDQCNERNRELLAAVNSTGKIFISH-TA--LSGKFVLRFAVGAPLTEEKHVTEAWQIIQKH 529 (539)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHhCCCEEEEe-eE--ECCEEEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 666542 11 124455555443344433 22 2345689999743 689999999999775
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.7e-13 Score=126.33 Aligned_cols=277 Identities=13% Similarity=0.117 Sum_probs=166.6
Q ss_pred cCCCCceEEecCCC--CCC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCCh
Q 045431 59 KYPDAEVISLGIGD--TTE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGA 135 (433)
Q Consensus 59 ~~~~~~~i~l~~g~--~~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~ 135 (433)
..+++..+|+..+. ..+ ..+|.+.+++.+++..... . .......+.+.++++.+....+-..+.+++++++
T Consensus 12 d~dG~~~lD~~~~~~~~~lGh~~p~i~~ai~~~~~~~~~---~---~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sG 85 (339)
T PF00202_consen 12 DVDGREYLDFMSGYGSVNLGHNHPEIAEAIAEQANKLNY---V---SFSGFTHPEAAELAEKLAELFPGGLDRVFFANSG 85 (339)
T ss_dssp ETTSEEEEESSHHHHTTTT-BT-HHHHHHHHHHHHHCSS---C---STTTSEEHHHHHHHHHHHHHSSTTEEEEEEESSH
T ss_pred ECCCCEEEECCCCccceecCCCccccchhHHHHhhhccc---c---cccceeccchhhhhhhhhhccccccceeeeccCc
Confidence 34566789997553 222 3578999999998876421 1 1122344566677777765444356799999999
Q ss_pred HHHHHH-H-HHh------c-CCCCEEEEeCCCChhhhhhHHHhCCc-ccccccccccceEEEeecCccCC----------
Q 045431 136 KCDISR-L-QIV------F-GSNVTMAVQDPSYPAYVDSSVIMGQT-GEFQKDAEKYGKIEYMRCTAENG---------- 195 (433)
Q Consensus 136 ~~al~~-l-~~l------~-~~gd~Vl~~~p~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~---------- 195 (433)
++|++. + .+. . ....+|+..+.+|++.......++.. .....+...+..+..+|.+....
T Consensus 86 seAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 165 (339)
T PF00202_consen 86 SEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAADEEEQACLNA 165 (339)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccchhhhHHHHHHH
Confidence 999986 4 222 2 23478999999998865444443322 22222333334556666643222
Q ss_pred cccCCC--CCCCccEEEEcCC-CCcccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEE
Q 045431 196 FFPDLS--TVARTDIIFFCSP-NNPTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIE 271 (433)
Q Consensus 196 ~~~~~~--~~~~~~~i~l~~p-~nPtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~ 271 (433)
+...+. ..+++.+|+ ..| +.-.|. ..+++.+++|.++|++||+++|.||++..+...|.......+.-.+| ++
T Consensus 166 ~~~~~~~~~~~~iaavi-vEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~PD-iv- 242 (339)
T PF00202_consen 166 LEELIAALNADEIAAVI-VEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGVDPD-IV- 242 (339)
T ss_dssp HHHHHHHHHGGGEEEEE-EESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSSSS-EE-
T ss_pred HHHHHHhhcCCcEEEEE-EeccccccCccccccchhhehcccccccccceecccccccccccCCccceecccccCc-cc-
Confidence 000001 123455544 466 444554 44778999999999999999999999998876665443333333344 33
Q ss_pred EecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHH
Q 045431 272 TSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDI 351 (433)
Q Consensus 272 i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 351 (433)
+++|.++ .|+.+|.+++++++. +.+......+++..++++.+++.+.|+.... +++.++.+++.++
T Consensus 243 --~~gK~l~-gG~p~sav~~~~~i~--------~~~~~~~~~~T~~g~p~~~aaa~~~l~~~~~---~~~~~~~~~~g~~ 308 (339)
T PF00202_consen 243 --TFGKGLG-GGLPISAVLGSEEIM--------EAFQPGSHGSTFGGNPLSCAAALATLEILEE---EDLLERVRELGER 308 (339)
T ss_dssp --EEEGGGG-TTSSEEEEEEEHHHH--------TTSCTTSSTCTTTT-HHHHHHHHHHHHHHHH---TTHHHHHHHHHHH
T ss_pred --ccccchh-hhhhcccccccchhh--------ccccccccccccccchHhhhhhhhHHHhhcc---HHHHHHHHHHHHH
Confidence 4679998 889999999998874 3332223556666788888888888763222 2234445555555
Q ss_pred HHHHHhh
Q 045431 352 IVETFNS 358 (433)
Q Consensus 352 l~~~l~~ 358 (433)
+.+.|++
T Consensus 309 l~~~L~~ 315 (339)
T PF00202_consen 309 LREGLRE 315 (339)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.3e-11 Score=107.91 Aligned_cols=160 Identities=16% Similarity=0.231 Sum_probs=113.9
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhH----HHhCCccccccc
Q 045431 104 EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSS----VIMGQTGEFQKD 178 (433)
Q Consensus 104 ~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~~~~~ 178 (433)
.+-...|.+.|+..= -...- +.++++++|+.. +..++++||+|+..+--|.+....+ +.+|
T Consensus 61 NPT~~vlE~RiAaLE-----GG~aa-~a~aSG~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~tl~~~G-------- 126 (426)
T COG2873 61 NPTTDVLEERIAALE-----GGVAA-LAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLG-------- 126 (426)
T ss_pred CchHHHHHHHHHHhh-----cchhh-hhhccchHHHHHHHHHhccCCCeeEeeccccCchHHHHHHHHHhcC--------
Confidence 345677888888752 12222 344566666664 8999999999999998888765544 4455
Q ss_pred ccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccc-cccCCCCC
Q 045431 179 AEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYAL-YISDDNPR 257 (433)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~-~~~~~~~~ 257 (433)
.++.++..++...+...+ .+++|+||+-+-.||-+.+.+ +++|.++|+++|+++|+|..++. +.. .
T Consensus 127 ----i~v~fvd~~d~~~~~~aI--~~nTkavf~EtigNP~~~v~D---ie~ia~iAh~~gvpliVDNT~atpyl~----r 193 (426)
T COG2873 127 ----IEVRFVDPDDPENFEAAI--DENTKAVFAETIGNPGLDVLD---IEAIAEIAHRHGVPLIVDNTFATPYLC----R 193 (426)
T ss_pred ----cEEEEeCCCCHHHHHHHh--CcccceEEEEeccCCCccccC---HHHHHHHHHHcCCcEEEecCCCcceec----c
Confidence 377777765433333222 479999999899999999988 88999999999999999998874 111 1
Q ss_pred cccccCCCCcceEEEecccccccccccceeeeeccccc
Q 045431 258 SIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKEL 295 (433)
Q Consensus 258 ~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~ 295 (433)
|+ + .+-.|++.|.+|.+|-.|--+|-+++....
T Consensus 194 P~---~--hGADIVvHS~TK~igGhGt~iGG~iVD~G~ 226 (426)
T COG2873 194 PI---E--HGADIVVHSATKYIGGHGTAIGGVIVDGGK 226 (426)
T ss_pred hh---h--cCCCEEEEeecccccCCccccceEEEeCCc
Confidence 12 1 122388999999998778888877765444
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.2e-10 Score=117.06 Aligned_cols=309 Identities=10% Similarity=0.054 Sum_probs=187.3
Q ss_pred CCCCCC---CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHH---HHHHhc-----CCCCEEEEeCCCChhhhhhH
Q 045431 98 YSGYGA---EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDIS---RLQIVF-----GSNVTMAVQDPSYPAYVDSS 166 (433)
Q Consensus 98 ~~~Y~~---~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~---~l~~l~-----~~gd~Vl~~~p~~~~~~~~~ 166 (433)
++-|.| .+|..++...+.+|+++-.|.+...+...+|++.-+. ++.... ...++|+++.-.|......+
T Consensus 516 ~hPyqPe~~sqG~lq~i~elq~~l~eltGmd~~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPasa 595 (939)
T TIGR00461 516 IHPFQPSNQVEGYQELIAQLEKWLCSITGFDAISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPASA 595 (939)
T ss_pred cCCCCchHHhHHHHHHHHHHHHHHHHHHCCCCcccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHHHH
Confidence 445544 3677788888888887755665444444455543222 222221 12367899999997777777
Q ss_pred HHhCCcccccccccccceEEEeecCccCCcccC-CCC-----CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCE
Q 045431 167 VIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST-----VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSI 240 (433)
Q Consensus 167 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~ 240 (433)
..+| .+++.++.+.++..+.+ +++ ..++++|++++|+| +|..-+ .+++|+++|+++|..
T Consensus 596 ~~~G------------~~Vv~V~~d~~G~iDle~L~~~i~~~~~~taaV~iT~pst-~G~~e~--~I~eI~~iah~~G~~ 660 (939)
T TIGR00461 596 AMAG------------MQVVPVNCDQDGNIDLVDLKNKAEQHGDELAAVMVTYPST-HGVFEP--TIQHACDIVHSFGGQ 660 (939)
T ss_pred HHCC------------CEEEEeccCCCCCcCHHHHHHHHhhcCCceEEEEEEeCCc-Cceecc--cHHHHHHHHHHcCCE
Confidence 7888 58888998755544332 221 14788999999999 787633 389999999999999
Q ss_pred EEEeccccc-cccCCCCCcccccCCCCcceEEEeccccccc----ccccceeeeeccccccccCCcc-hhHH------HH
Q 045431 241 IVYDSAYAL-YISDDNPRSIFEIPGAKEVAIETSSFSKYAG----FTGVRLGWTVIPKELLFSDGFP-VAKD------FN 308 (433)
Q Consensus 241 li~De~~~~-~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~----~~G~r~G~l~~~~~~~~~~~~~-~~~~------~~ 308 (433)
+++|.++.- ...-..| .. .+-.++.+|.+|+|+ .+|-.+|++.+++.+....-.+ +... -.
T Consensus 661 v~VDgAq~~al~~l~~P---g~----~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lPg~~v~~t~d~~greq 733 (939)
T TIGR00461 661 VYLDGANMNAQVGLTSP---GD----LGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKHDVVSMITGIGGSK 733 (939)
T ss_pred EEEEecChhhCCCCCCc---cc----cCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhchhhcCCCcccccccCCCCcc
Confidence 999999863 2111111 11 223488999999775 2455689999987654211000 0000 00
Q ss_pred HHHhhcc-CCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecC-CCccE---EEEECC------
Q 045431 309 RIVCTCF-NGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGG-KNAPY---VWVQFP------ 377 (433)
Q Consensus 309 ~~~~~~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~g~~---~~~~~~------ 377 (433)
.+...+. ...+......+..++..-+.+.+++..+.--.+.+++.+.|++ ++++..+ ..+.+ +.++++
T Consensus 734 ~Iga~s~~~~g~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~-~~~~l~~~~~~~~~hEfv~~~~~~~~~~ 812 (939)
T TIGR00461 734 SIGSVSAAPYGSASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKD-HYPILFVGTLKHVAHECILDLRPLKAKT 812 (939)
T ss_pred ccccccccccCcHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc-cCcccccCCCCceeEEEEEeccchhhhc
Confidence 0011111 1223333344455555455566788888888899999999987 4555433 12332 445665
Q ss_pred CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHh
Q 045431 378 GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHL 431 (433)
Q Consensus 378 ~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~ 431 (433)
+....++.++|++. |+..-. ..|...+.=.|+.+-..+.+|||+.++.|.++
T Consensus 813 g~~~~dIakrL~d~-G~hapt-~~~pv~g~lmiepTE~eskeelD~f~~al~~I 864 (939)
T TIGR00461 813 GIEAIDVAKRLQDY-GFHAPT-LSFPVPGTLMVEPTESESLEELDRFCDAMIAI 864 (939)
T ss_pred CCCHHHHHHHHHhC-Ceeccc-cCCccCCeEEEEeeccCCHHHHHHHHHHHHHH
Confidence 25667888888765 987533 33432222234444456899999999998765
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.1e-10 Score=119.06 Aligned_cols=337 Identities=10% Similarity=0.058 Sum_probs=191.3
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCC---CCCCHHHHHHHHHHHhccCCCCCCcEEEcC-ChHHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA---EQGEKPLRAAIASTFYKDLGIEEGDIFVSD-GAKCD 138 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~---~~g~~~lr~~la~~l~~~~~~~~~~i~~~~-G~~~a 138 (433)
..+|-++..... .++.+...+.. ... ...++-|.| .+|..++...+.+|+++-.|.+ ++.+.. |++++
T Consensus 499 ~~~i~lGsct~~--~~p~~~~~~~~---~~~-f~~~hP~qp~e~~qG~l~~i~e~q~~l~eltG~d--~~sl~~~~ga~g 570 (954)
T PRK05367 499 RSMIPLGSCTMK--LNAAAEMIPIT---WPE-FANLHPFAPAEQAAGYRELIDQLEAWLAEITGYD--AVSLQPNAGAQG 570 (954)
T ss_pred cceeeCCcCCCc--CCHHHHHHHHh---Ccc-ccccCCCChHHHHHHHHHHHHHHHHHHHHHHCCC--CEEECccHHHHH
Confidence 457778775443 34443333322 111 122334433 3567788888888887755544 565555 44444
Q ss_pred HHH----HHHh-cCCCC----EEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CC----C-C
Q 045431 139 ISR----LQIV-FGSNV----TMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LS----T-V 203 (433)
Q Consensus 139 l~~----l~~l-~~~gd----~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~-~ 203 (433)
..+ +... .++|+ +|++++..|+.....+..+| .+++.++.+.++..+.+ ++ . .
T Consensus 571 e~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~~G------------~~vv~v~~d~~G~iD~~~L~~~i~~~~ 638 (954)
T PRK05367 571 EYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMAG------------MKVVVVACDENGNIDLDDLRAKAEEHA 638 (954)
T ss_pred HHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHHCC------------CEEEEECCCCCCCcCHHHHHHHHhccC
Confidence 322 2222 25665 69999999988877788888 58888888755443322 21 1 1
Q ss_pred CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccc--
Q 045431 204 ARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGF-- 281 (433)
Q Consensus 204 ~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~-- 281 (433)
.++.+|++++|++-.+...+ +++|+++|+++|+++++|.++...... ..+...+ +-.++.+|.+|+|+.
T Consensus 639 ~~la~V~it~pst~G~~e~~---I~eI~~i~h~~G~~v~VDgA~~~al~~--l~~pg~~----GADi~~~s~HK~f~~P~ 709 (954)
T PRK05367 639 DNLAAIMITYPSTHGVFEET---IREICEIVHEHGGQVYLDGANMNAQVG--LARPGDI----GADVSHLNLHKTFCIPH 709 (954)
T ss_pred CCeEEEEEEcCCCCeeecCC---HHHHHHHHHHcCCEEEEECcChhhccC--CCChhhc----CCCEEEecCcccCCCCc
Confidence 24667778788765333344 899999999999999999999632111 0111112 223888999999752
Q ss_pred --cccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHH----HHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHH
Q 045431 282 --TGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNI----SQAGGLACLSPEGFKAVHEVIGFYKENTDIIVET 355 (433)
Q Consensus 282 --~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 355 (433)
+|-.+|++.+.+.+...-.......-...........+.. ....+..++...+.+.+++..+..-.+++++.+.
T Consensus 710 G~GGPg~G~l~vr~~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~ 789 (954)
T PRK05367 710 GGGGPGVGPIGVKAHLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRMMGAEGLRQATEVAILNANYIAKR 789 (954)
T ss_pred CCCCCceEEEeecccccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence 3444788888765431100000000000000011111222 2222344444455566677777777889999999
Q ss_pred Hhhc-CCeeecCCCcc--EEEEEC---C---CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHH
Q 045431 356 FNSL-GFKVYGGKNAP--YVWVQF---P---GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEA 424 (433)
Q Consensus 356 l~~~-g~~~~~~~~g~--~~~~~~---~---~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~ 424 (433)
|++. .+.+..+.+-. =+.+++ + +....++.++|. ++|+.... ..|. ..+.+||+. +.+.+||+++
T Consensus 790 L~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~g~~~~di~krL~-d~G~~~~t-~~~p--v~~~l~i~ptE~~s~~elDr~ 865 (954)
T PRK05367 790 LKDHYPVLYTGANGRVAHECILDLRPLKESTGITVDDIAKRLI-DYGFHAPT-MSFP--VAGTLMVEPTESESKAELDRF 865 (954)
T ss_pred HHhhcCccccCCCCCcccceEEEeecccccCCCCHHHHHHHHH-HCCCeEee-cCCc--cCCEEEEEeeecCCHHHHHHH
Confidence 9774 44443321111 133333 2 245577777774 55998754 2232 357888985 5689999999
Q ss_pred HHHHHHhh
Q 045431 425 CKRFKHLY 432 (433)
Q Consensus 425 l~~l~~~l 432 (433)
+++|+.+.
T Consensus 866 ~~al~~i~ 873 (954)
T PRK05367 866 CDAMIAIR 873 (954)
T ss_pred HHHHHHHH
Confidence 99998763
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.3e-10 Score=112.01 Aligned_cols=314 Identities=11% Similarity=0.045 Sum_probs=179.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhccCCCC-----------C--CcEEEcCChHHHHH-HH---HH-hcC-----------
Q 045431 97 GYSGYGAEQGEKPLRAAIASTFYKDLGIE-----------E--GDIFVSDGAKCDIS-RL---QI-VFG----------- 147 (433)
Q Consensus 97 ~~~~Y~~~~g~~~lr~~la~~l~~~~~~~-----------~--~~i~~~~G~~~al~-~l---~~-l~~----------- 147 (433)
....|...+...++.+.+.+|+.+.++.. + ..=++|+|++.+.. ++ +. .+.
T Consensus 117 n~~~~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~ 196 (522)
T TIGR03799 117 NLVKIETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVARE 196 (522)
T ss_pred CcceeecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccc
Confidence 34466667788999999999998744211 1 12356777777643 33 22 221
Q ss_pred -----------CCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC------CCCccEE
Q 045431 148 -----------SNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST------VARTDII 209 (433)
Q Consensus 148 -----------~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~i 209 (433)
++..|++.+-.|.+....+..+|... .+++.+|++.++..+.+ +++ ..+++.+
T Consensus 197 gl~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~lglg~---------~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~ 267 (522)
T TIGR03799 197 GLFAALKHYGYDGLAILVSERGHYSLGKAADVLGIGR---------DNLIAIKTDANNRIDVDALRDKCAELAEQNIKPL 267 (522)
T ss_pred cchhhhhhccCCceEEEECCCchHHHHHHHHHcCCCc---------ccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcE
Confidence 23468888889999888888888411 26788888765444333 221 1344555
Q ss_pred EEc--CCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccC-CCCCcccccCCCCcceEEEecccccccccccce
Q 045431 210 FFC--SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISD-DNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRL 286 (433)
Q Consensus 210 ~l~--~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~-~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~ 286 (433)
.++ ..++.||.+-| +++|+++|+++|+++++|.+|+..... .....+ +.+...-..+..|.+|++. ....+
T Consensus 268 ~vvataGtt~tGaiDp---l~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~--l~gle~aDSit~d~HK~l~-~P~g~ 341 (522)
T TIGR03799 268 AIVGVAGTTETGNIDP---LDEMADIAQELGCHFHVDAAWGGATLLSNTYRHL--LKGIERADSVTIDAHKQLY-VPMGA 341 (522)
T ss_pred EEEEEecCcCCCCcCC---HHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHH--hcCchhCCEEEEChhhcCC-cCccc
Confidence 554 44678999888 888899999999999999999863321 111111 1221122366779999774 55668
Q ss_pred eeeeccccccccCCcchhHHHH-----HHHh-hccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-
Q 045431 287 GWTVIPKELLFSDGFPVAKDFN-----RIVC-TCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL- 359 (433)
Q Consensus 287 G~l~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 359 (433)
|++++++.............+. .... ....+.+..+ ......++..+...++++.++..+.++++.+.|++.
T Consensus 342 G~llvr~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~a-l~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~~ 420 (522)
T TIGR03799 342 GMVLFKDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMA-MLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQP 420 (522)
T ss_pred EEEEEeCHHHHHHhccCcchhcCCCCCccccceeecCcchHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9988875432110000000000 0000 0001111111 122333333334557888888999999999999887
Q ss_pred CCeeecCCCccEEEEECCCCC----------------h-------HHHHHHHHHcCCeEecCCC-----CCCCCCCCeEE
Q 045431 360 GFKVYGGKNAPYVWVQFPGRS----------------S-------WDVFSEILEKTHVVTTPGS-----GFGPGGEGFIR 411 (433)
Q Consensus 360 g~~~~~~~~g~~~~~~~~~~~----------------~-------~~~~~~l~~~~gi~v~~g~-----~f~~~~~~~iR 411 (433)
+++++.+..-..+.+++.+.. . ..+.+++. +.|....... .+...+...+|
T Consensus 421 ~~el~~~p~l~iv~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~-~~G~~~vs~t~l~~~~~~g~~~~~lR 499 (522)
T TIGR03799 421 DFELVTEPELCLLTYRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQR-EAGKSFVSRTRLTPAQYDHQPTVVFR 499 (522)
T ss_pred CeEEecCCCccEEEEEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHH-hcCCEEEEEEEecccccCCCCcEEEE
Confidence 888876544445555542100 0 12333333 3355554322 12122235699
Q ss_pred Eeecc---ChhHHHHHHHH
Q 045431 412 VSAFG---HRGNVLEACKR 427 (433)
Q Consensus 412 i~~~~---~~~~l~~~l~~ 427 (433)
+++.+ +.++++..++.
T Consensus 500 ~~~~np~tt~~~i~~~l~~ 518 (522)
T TIGR03799 500 VVLANPLTTHEILQDILDE 518 (522)
T ss_pred EEecCCCCCHHHHHHHHHH
Confidence 99754 68888887765
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.7e-09 Score=102.82 Aligned_cols=315 Identities=10% Similarity=0.031 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCc--EEEcCChHHHHHH-H---HHhcCCCCEE
Q 045431 79 EVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGD--IFVSDGAKCDISR-L---QIVFGSNVTM 152 (433)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~--i~~~~G~~~al~~-l---~~l~~~gd~V 152 (433)
..+.+.+.-.+.+.++......| .-+..++.+.+-+|+.+.++.++++ =.+|+|++++... + +... +...|
T Consensus 105 s~l~~~l~~~~nN~Gdp~~~s~~--~~~s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~-~~~vv 181 (470)
T PLN02263 105 GALGQLQHFSINNLGDPFIESNY--GVHSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVF-PDGIL 181 (470)
T ss_pred hhHHHHHHhhccCCCCccccCCc--chhHHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhc-CCcEE
Confidence 34444444444443331112223 2267899999999999877776543 4678888887653 3 2223 33478
Q ss_pred EEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC-----CCCccEEEEcCCCCccccCCCHHH
Q 045431 153 AVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST-----VARTDIIFFCSPNNPTGAAATREQ 226 (433)
Q Consensus 153 l~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~i~l~~p~nPtG~~~~~~~ 226 (433)
++++-.|.++..++..+| .+++.+|.+.++..+.+ +++ ..++-+|+.+-.+.++|.+=+
T Consensus 182 y~S~~aH~Sv~KAa~llg------------i~~~~Vp~d~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDp--- 246 (470)
T PLN02263 182 YASRESHYSVFKAARMYR------------MECVKVDTLVSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDD--- 246 (470)
T ss_pred EEcCCccHHHHHHHHhcC------------CcceEeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCC---
Confidence 889999999999999999 47788888755443333 211 112444555677889998644
Q ss_pred HHHHHHHHHHcCC-----EEEEeccccccccC--CCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccC
Q 045431 227 LTRLVQFAKDNGS-----IIVYDSAYALYISD--DNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSD 299 (433)
Q Consensus 227 ~~~i~~~a~~~~~-----~li~De~~~~~~~~--~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~ 299 (433)
+++|.++|+++|+ ++.+|.+|+++... .... ...+.. .-.=+.-+++|+++ ....+|.++.++..+..
T Consensus 247 i~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~-~~df~~--~vDSIsvD~HK~l~-~P~~cgvll~R~~~~~~- 321 (470)
T PLN02263 247 LDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAP-KVTFKK--PIGSVSVSGHKFVG-CPMPCGVQITRMEHINV- 321 (470)
T ss_pred HHHHHHHHHHcCCccCCeeEEEeccchhhHhhhccccc-ccCCCc--CccEEEECCccccC-CCcCEEEEEEehhhHhh-
Confidence 8888888999986 99999999875431 1111 111111 11233457899996 77889999888665310
Q ss_pred CcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCCC
Q 045431 300 GFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGR 379 (433)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~ 379 (433)
.....+-+.........+-+......+...|+..+.+.+++..++.-++++++.+.|++.|+........+.+.+.-+.
T Consensus 322 ~~~~~~Yl~~~d~ti~gSR~g~~al~lW~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~g~~~~~~p~s~~V~f~~p~- 400 (470)
T PLN02263 322 LSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLREAGISAMLNELSSTVVFERPK- 400 (470)
T ss_pred hccChHhhCCCCCCcCCCCCcHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCceEEEEecCc-
Confidence 0000000100000001111111123334455555666778888888899999999999988876544455555555442
Q ss_pred ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc--ChhHHHHHHHHHHHh
Q 045431 380 SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG--HRGNVLEACKRFKHL 431 (433)
Q Consensus 380 ~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~--~~~~l~~~l~~l~~~ 431 (433)
.+. .. +|..+.+- ++.++++++. +.+.+++.++.|++.
T Consensus 401 --~~~----~~-~gW~L~~~-------~~~~Hivvmphv~~~~id~fi~DL~~~ 440 (470)
T PLN02263 401 --DEE----FV-RRWQLACQ-------GNIAHVVVMPSVTIEKLDYFLKELVEK 440 (470)
T ss_pred --hHH----hh-cceEEccC-------CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 111 12 36666541 2458888643 678899999998775
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.7e-10 Score=118.29 Aligned_cols=306 Identities=11% Similarity=0.093 Sum_probs=181.1
Q ss_pred CCCCC---CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHH---HH-hcCC----CCEEEEeCCCChhhhhhHH
Q 045431 99 SGYGA---EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRL---QI-VFGS----NVTMAVQDPSYPAYVDSSV 167 (433)
Q Consensus 99 ~~Y~~---~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l---~~-l~~~----gd~Vl~~~p~~~~~~~~~~ 167 (433)
+-|.| .+|..++-..+.+++++-.|.+.-.+...+|++.-+..+ .. ...+ .++|+++.-.|......+.
T Consensus 530 hPyqp~e~sQG~lq~i~elq~~l~eLtGmd~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpasa~ 609 (954)
T PRK12566 530 HPFAPREQAEGYRAMIDELEAWLCAITGFDAICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPASAQ 609 (954)
T ss_pred CCCCchhhhcCHHHHHHHHHHHHHHHHCCCeEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHHHHH
Confidence 45666 789999988888888875555544444555555443322 22 2222 3577888888855555566
Q ss_pred HhCCcccccccccccceEEEeecCccCCcccC-CCC-----CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEE
Q 045431 168 IMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST-----VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSII 241 (433)
Q Consensus 168 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~l 241 (433)
..| .+++.++.+.++..+.+ +++ .+++.+|.+++|++-.+. .+.+++|+++|+++|+++
T Consensus 610 ~~G------------ieVv~Vp~D~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~---e~~V~eI~~iah~~Galv 674 (954)
T PRK12566 610 MAG------------MRVVIVECDPDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVY---EEGIREICEVVHQHGGQV 674 (954)
T ss_pred HCC------------CEEEEeccCCCCCcCHHHHHHHhhccCCCEEEEEEEecCcCcee---cchHHHHHHHHHHcCCEE
Confidence 666 58889998765543332 222 146667777777664433 456999999999999999
Q ss_pred EEeccccccccCCCCCcccccCCCCcceEEEecccccccc----cccceeeeeccccc---cccCCcc--hhHHHHHHHh
Q 045431 242 VYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGF----TGVRLGWTVIPKEL---LFSDGFP--VAKDFNRIVC 312 (433)
Q Consensus 242 i~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~----~G~r~G~l~~~~~~---~~~~~~~--~~~~~~~~~~ 312 (433)
++|.++.- .... .....++ +..++.++++|+|+. +|.-+|.+.+.+.+ +.. .+- ....-.+...
T Consensus 675 ~vDgA~~~-a~~~-l~~Pg~~----GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~-~P~~d~~G~~~r~ga 747 (954)
T PRK12566 675 YMDGANLN-AQVG-LARPADI----GADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVAN-HPVVPVEGPDPNNGA 747 (954)
T ss_pred EEEeeChh-hccC-CCChhhc----CCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccC-CCCcCCCCCCCCCCc
Confidence 99999862 1111 1111222 234899999999852 24446766666533 210 000 0000000111
Q ss_pred h-ccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCCccE---EEEECC------CCCh
Q 045431 313 T-CFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAPY---VWVQFP------GRSS 381 (433)
Q Consensus 313 ~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~---~~~~~~------~~~~ 381 (433)
. .....+.....++..++...+.+ +.+.......+.+++.+.|.+. ++.+.+ ..+.+ +.+++. +.+.
T Consensus 748 ~S~~~~gsa~~l~~A~~Yi~~lG~e-Lk~aa~~ailnAnYla~rL~~~~~v~~~~-~~~~~~hEfii~~~~l~~~~g~~~ 825 (954)
T PRK12566 748 VSAAPWGSASILPISWMYIAMMGPQ-LADASEVAILSANYLANQLGGAFPVLYRG-RNERVAHECILDLRPLKAQTGISE 825 (954)
T ss_pred eeecccchHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHhHhhCCCCcCC-CCCCeeeEEEEEccccccccCCCH
Confidence 1 11222323344455566555555 6666666677888999998764 444422 22331 223332 2455
Q ss_pred HHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 382 WDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 382 ~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
.++.++|+ ++||.... ..| + ..+++|++. +.+.+||++++++|+++.
T Consensus 826 ~dvakRL~-d~Gihapt-~~f-P-v~~~LmIepTE~eskeEIDrf~eAL~~I~ 874 (954)
T PRK12566 826 EDVAKRLM-DYGFHAPT-MSF-P-VPGTLMVEPTESESKAELDRFVEAMLSIR 874 (954)
T ss_pred HHHHHHHH-HCCcEEeE-Eee-c-cCCEEEEEeeeeCCHHHHHHHHHHHHHHH
Confidence 77888887 66887643 333 2 367899994 668999999999998764
|
|
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.3e-09 Score=94.13 Aligned_cols=330 Identities=14% Similarity=0.167 Sum_probs=195.7
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCC-CCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYG-AEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR 141 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~-~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~ 141 (433)
.++|-|+-+.....++....+..+.+..+... .....+. ....--++-+.+.+.+...+|..+.+++++.+++..++-
T Consensus 30 ~~viyLdgnSLGa~p~~~~a~~~q~a~deW~~-~lirsw~~a~~~W~~lp~~lgdklApLiGA~~~Evvv~dtts~nl~k 108 (407)
T COG3844 30 GGVIYLDGNSLGARPRAVTARLQQVATDEWGE-GLIRSWNKAKADWFDLPERLGDKLAPLIGARAGEVVVTDTTSINLFK 108 (407)
T ss_pred CCeEEeeccccccCchHHHHHHHHHHHHHHHh-hhhhhhcccCCchhhchhHHHHHhhhhhcCCCCceEEeCCcchHHHH
Confidence 46888877665433333333333333333321 1222221 122334555566666666679999999999999988874
Q ss_pred -HHHhc--CCCCEEEEeCC-CChhh----hhhHHHhCCcccccccccccceEEEeecCccCCccc-CCC--CCCCccEEE
Q 045431 142 -LQIVF--GSNVTMAVQDP-SYPAY----VDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFP-DLS--TVARTDIIF 210 (433)
Q Consensus 142 -l~~l~--~~gd~Vl~~~p-~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~i~ 210 (433)
+.+.+ ++|++|++.+- +|+.- ...+..++. ..+-+....+ ++. ...++.+++
T Consensus 109 ~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~-----------------~~~~~~~~~P~~~~~~~~dd~AvV~ 171 (407)
T COG3844 109 VLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGI-----------------GYDLEGVIAPRALEEAITDDVAVVL 171 (407)
T ss_pred HHHHHhccCCCceEEeecCCCCCcchhhhcchhhhhcc-----------------cccceeeeChHHHHHhhccceEEEE
Confidence 55554 56888888664 44432 222333331 1111111111 111 135778888
Q ss_pred EcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccccc-ceeee
Q 045431 211 FCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGV-RLGWT 289 (433)
Q Consensus 211 l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~-r~G~l 289 (433)
|++.++-||+.++ +.+|-++++++|++++-|-+|+-... |..+-. .+-.+-|++..|.++ +|- -.+++
T Consensus 172 L~~V~y~TGql~d---m~aiT~~AH~~galv~wDLAHsaGav---p~~Lh~----~gaDfaigcsyKYLN-gGPGapa~l 240 (407)
T COG3844 172 LSHVNYKTGQLLD---MRAITALAHQHGALVGWDLAHSAGAV---PVDLHA----AGADFAIGCSYKYLN-GGPGAPAGL 240 (407)
T ss_pred eccccccccceee---HHHHHHHHHhcCceEEeehhcccCCc---ceeecc----cCCCeeeeeeceecc-CCCCCceeE
Confidence 8899999999998 88999999999999999999984322 222222 223477889999886 433 25666
Q ss_pred eccccccccCCcchhHH------------------HHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHH
Q 045431 290 VIPKELLFSDGFPVAKD------------------FNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDI 351 (433)
Q Consensus 290 ~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 351 (433)
.+.+.......+..... ..++.+ ...+.++..+....|+-...-.+.+++++--...++
T Consensus 241 ~v~~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~---gt~~V~s~aal~~aLDifa~~~i~~lR~kSlaLTd~ 317 (407)
T COG3844 241 FVAPRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLC---GTQPVLSLAALEGALDIFADVDITELRKKSLALTDY 317 (407)
T ss_pred EeccccccccccccccccCCCCcchhhhccCcCccccceee---CCcchhhhHHHhhhhhhhhhcCHHHHHHhhhHHHHH
Confidence 66665542211111111 111111 123344444333333322222367777777777888
Q ss_pred HHHHHhhc----CCeeecCC----CccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee---ccChhH
Q 045431 352 IVETFNSL----GFKVYGGK----NAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA---FGHRGN 420 (433)
Q Consensus 352 l~~~l~~~----g~~~~~~~----~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~---~~~~~~ 420 (433)
+.+.++.. ++.+..|. .|-.+.+..| ...++++.|..+ ||..- ...++.+|+.+ |.+-+|
T Consensus 318 fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp--~~~~V~qaLi~r-GVigD------~R~P~vlRfgftPlY~~~~D 388 (407)
T COG3844 318 FIELVEARCEYYGLTLVTPRAHEERGSQVSLYHP--HGYQVMQALIDR-GVIGD------FREPDVLRFGFTPLYVSFVD 388 (407)
T ss_pred HHHHHHhccccCCcEEeccchhhhccceeeEecC--cHHHHHHHHHHc-Ccccc------ccCCCeeeecCccceechhH
Confidence 88877764 56666653 3556767666 456777776654 98762 23468899995 779999
Q ss_pred HHHHHHHHHHhhC
Q 045431 421 VLEACKRFKHLYK 433 (433)
Q Consensus 421 l~~~l~~l~~~l~ 433 (433)
+-.+++.|.++|.
T Consensus 389 Vw~AV~~L~evL~ 401 (407)
T COG3844 389 VWDAVDALEEVLD 401 (407)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998763
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-09 Score=105.61 Aligned_cols=277 Identities=15% Similarity=0.164 Sum_probs=172.0
Q ss_pred CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCC-CCcEEEcCChHHHHHH-HHH----hc-CC
Q 045431 76 PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIE-EGDIFVSDGAKCDISR-LQI----VF-GS 148 (433)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~-~~~i~~~~G~~~al~~-l~~----l~-~~ 148 (433)
.+++...+++...+.. .....+..++..++.+.+.+++.+.++.+ .-.=.+|+|+++++.+ +.. .. ..
T Consensus 73 ~~~~~a~~~~~~~~~~-----nl~d~~~~p~a~~~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~ 147 (460)
T COG0076 73 RVPPVAAELLVSALNK-----NLGDPDESPAAAELEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRA 147 (460)
T ss_pred CCHHHHHHHHHHHHhh-----cCCCcccChhHHHHHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHh
Confidence 3566667777777653 22222233488999999999999866664 3344688888888653 321 11 11
Q ss_pred ---C------CEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCC---C--CCCcc--EEEEc
Q 045431 149 ---N------VTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS---T--VARTD--IIFFC 212 (433)
Q Consensus 149 ---g------d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~--~i~l~ 212 (433)
+ .+|+++.-.|.++...+..+|. ....++.++. ....++. + ...+- +|+-+
T Consensus 148 ~~~~~~~~~~P~ii~s~~aH~s~~Kaa~~lG~------------~~~~v~~~~~-~~~id~~~l~~~i~~~t~~g~vV~~ 214 (460)
T COG0076 148 LAESGKPGGKPNIVCSETAHFSFEKAARYLGL------------GLRRVPTVPT-DYRIDVDALEEAIDENTIGGVVVGT 214 (460)
T ss_pred hhcccccCCCCeEEecCcchhHHHHHHHHhCC------------CceeEEeccC-ccccCHHHHHHHHHhhccCceEEEE
Confidence 1 2699999999999999999994 5666666553 2222221 1 12222 36667
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccC--CCCCc-ccccCCCCcceEEEecccccccccccceeee
Q 045431 213 SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISD--DNPRS-IFEIPGAKEVAIETSSFSKYAGFTGVRLGWT 289 (433)
Q Consensus 213 ~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~--~~~~~-~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l 289 (433)
..+.+||.+ +++++|.++|+++++++.+|.+|+.+... ..... ...++. -.-+.-+++|.+ +....+||+
T Consensus 215 aGtT~~G~i---Ddi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~~f~l~~---vdSIt~d~HK~g-~aP~~~G~i 287 (460)
T COG0076 215 AGTTDTGSI---DDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEG---VDSITVDGHKYG-LAPIGCGVV 287 (460)
T ss_pred ecCCCCCcc---CCHHHHHHHHHHcCCcEEEEccccceeecccCccchhhcCCCC---ceEEEECccccc-CCCCCceEE
Confidence 889999985 55999999999999999999999986542 21111 122222 224456899987 588889999
Q ss_pred eccccc-cccCCcchhHHHHH---HHhhccCC-CcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcC-Cee
Q 045431 290 VIPKEL-LFSDGFPVAKDFNR---IVCTCFNG-ASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLG-FKV 363 (433)
Q Consensus 290 ~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~ 363 (433)
+.++.. +.+ ...+...+.. .......+ -+.-...+....+...+.+.+.++.++.-+.++.+.+.+++.| +++
T Consensus 288 l~rd~e~l~~-~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~ 366 (460)
T COG0076 288 LFRDEEALRR-ILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFEL 366 (460)
T ss_pred EEECHHHhhh-hhhcccccCCCCCcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEe
Confidence 998873 210 0000000000 00000011 1111122222333334445678888888899999999999985 888
Q ss_pred ecCCCccEEEEECCC
Q 045431 364 YGGKNAPYVWVQFPG 378 (433)
Q Consensus 364 ~~~~~g~~~~~~~~~ 378 (433)
..+...+.+.+++++
T Consensus 367 ~~~p~l~~V~fr~~~ 381 (460)
T COG0076 367 VNEPELPIVAFRLKD 381 (460)
T ss_pred ecCCccceEEEEcCC
Confidence 876677888888863
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.6e-09 Score=106.66 Aligned_cols=317 Identities=13% Similarity=0.113 Sum_probs=190.5
Q ss_pred EecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCC-----CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH
Q 045431 67 SLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA-----EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR 141 (433)
Q Consensus 67 ~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~-----~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~ 141 (433)
-++.|.++--.|+.+.+.+.+.- ..+..|+| ++|..+.-=.+...+.+..|.+..|.-+..+++++.++
T Consensus 68 fig~G~y~~~~p~~i~r~v~~~p------~~~TaytPyQ~EisQG~Le~l~e~Qt~i~eLtGm~~aNaSl~d~atA~aEa 141 (939)
T TIGR00461 68 YIGMGYYGTILPPVIQRNLLENP------GWYTAYTPYQPEISQGRLEALLNFQTVVSDLTGLPVANASLLDEGTAAAEA 141 (939)
T ss_pred cCCCCcCCCcCChHHHHHHHhCc------hhhhcCCCCChhhhhHHHHHHHHHHHHHHHHHCCChhhhhccchhhHHHHH
Confidence 34677766567887776555521 33455544 23333332222233333347788888888999888875
Q ss_pred -HHHh-c--CCCCEEEEeCCCChhhhhhHH----HhCCcccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcC
Q 045431 142 -LQIV-F--GSNVTMAVQDPSYPAYVDSSV----IMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCS 213 (433)
Q Consensus 142 -l~~l-~--~~gd~Vl~~~p~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~ 213 (433)
+.+. . +++++|++++-.||.+...++ ..| .+++.++.+ +++..-++.++++.+
T Consensus 142 ~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g------------~~v~~~~~~-------~l~~~~~~~~v~~q~ 202 (939)
T TIGR00461 142 MALSFNVSKKKANKFFVAKDLHPQTKSVLHTRAKPFG------------IEVIVVDCS-------DIKKAVDVFGCLLQY 202 (939)
T ss_pred HHHHHHhhcCCCCEEEECCCCCcchHHHHHHHHHhcC------------cEEEEEcHH-------HHhhcCCEEEEEEEC
Confidence 3332 2 234899999999998886666 334 366666442 122211566777778
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccc----cccceeee
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGF----TGVRLGWT 289 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~----~G~r~G~l 289 (433)
|+. +|.+. ++++|.++++++|.+++++.-...+.. ..+-.++ +-.|++++ +|.||. .|--.|++
T Consensus 203 Pn~-~G~ie---d~~~i~~~~h~~gal~~~~ad~~al~l---l~~Pge~----GaDi~vg~-~q~fg~p~g~GGP~aG~~ 270 (939)
T TIGR00461 203 PAT-DGSIL---DYKQLIDALHSHKSLVSVAADLMALTL---LTPPGHY----GADIVLGS-SQRFGVPMGYGGPHAAFF 270 (939)
T ss_pred CCC-CeEEe---cHHHHHHHHHHcCCEEEEEechHHhCC---cCCHHHc----CCcEEeeC-CCccCCCCCCCCCceeee
Confidence 854 89875 489999999999999998543221211 1111122 12255664 555553 24457888
Q ss_pred ecccccccc----------CC-----c-----chhHHHHHHHhhccCCCcHHHHHH-HHHhcCcCChhHHHHHHHHHHHH
Q 045431 290 VIPKELLFS----------DG-----F-----PVAKDFNRIVCTCFNGASNISQAG-GLACLSPEGFKAVHEVIGFYKEN 348 (433)
Q Consensus 290 ~~~~~~~~~----------~~-----~-----~~~~~~~~~~~~~~~~~~~~~q~~-~~~~l~~~~~~~~~~~~~~~~~~ 348 (433)
.+++.+... +. . .-.+.+++.+..++.+++....+. +..++.-.+-+.++++.++...+
T Consensus 271 a~~~~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSNICt~qaL~a~~a~~Y~~~~G~~GL~~iA~~~~~~ 350 (939)
T TIGR00461 271 AVKDEYNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSNICTAQVLLANVASSYCVYHGPKGLKNIARRIHSL 350 (939)
T ss_pred eecHhhHhhCCCCceeEEecCCCCccceeecccccccccccccCcchhHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 888776521 00 0 001123444444333333222221 12222223446678889999999
Q ss_pred HHHHHHHHhhcCCeeecCCCccE--EEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHH
Q 045431 349 TDIIVETFNSLGFKVYGGKNAPY--VWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEA 424 (433)
Q Consensus 349 ~~~l~~~l~~~g~~~~~~~~g~~--~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~ 424 (433)
..++.+.|++.|+++..+ .+| +.++++..+..++.+.++++ ||.+... .++.+++|+ ..+.+|++.+
T Consensus 351 a~~l~~~L~~~G~~~~~~--~fF~~~~v~~~~~~~~~i~~~~~~~-gi~l~~~------~~~~i~~s~~E~~t~~di~~l 421 (939)
T TIGR00461 351 TSILANGLENDPHELINK--TWFDTLTVKVGNGISSELLKAAEEF-NINLRAV------DTTTVGIALDETTTKADVENL 421 (939)
T ss_pred HHHHHHHHHhCCCcccCC--CccceEEEEeCCCCHHHHHHHHHHC-CCeeeec------CCCEEEEEeecCCCHHHHHHH
Confidence 999999999999988754 344 44555434566777777655 9997642 236799996 5689999999
Q ss_pred HHHHH
Q 045431 425 CKRFK 429 (433)
Q Consensus 425 l~~l~ 429 (433)
++.+.
T Consensus 422 ~~~~~ 426 (939)
T TIGR00461 422 LKVFD 426 (939)
T ss_pred HHHhc
Confidence 99884
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.4e-11 Score=98.84 Aligned_cols=62 Identities=21% Similarity=0.253 Sum_probs=55.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhc--c--CCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChh
Q 045431 100 GYGAEQGEKPLRAAIASTFYK--D--LGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPA 161 (433)
Q Consensus 100 ~Y~~~~g~~~lr~~la~~l~~--~--~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~ 161 (433)
.|++..|.++||+++|+|+.+ + +.+++++|++|+|+++++.+ +..+++|||.|++++|+|++
T Consensus 87 ~Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~dpGD~VlVp~P~Y~~ 153 (153)
T PLN02994 87 LFQDYHGLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIADPGDAFLVPTPYYAA 153 (153)
T ss_pred cCCCCCCcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Confidence 487889999999999999986 4 45789999999999999997 58889999999999999974
|
|
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.8e-10 Score=101.00 Aligned_cols=270 Identities=19% Similarity=0.260 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCCC-CCCCHHHHHHHHHHHhccCCCCCCcEE---EcCChHHHHH-HHHHhcCCCCEEE
Q 045431 79 EVITSALAKRSYALSTQEGYSGYGA-EQGEKPLRAAIASTFYKDLGIEEGDIF---VSDGAKCDIS-RLQIVFGSNVTMA 153 (433)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~Y~~-~~g~~~lr~~la~~l~~~~~~~~~~i~---~~~G~~~al~-~l~~l~~~gd~Vl 153 (433)
..+++|+++.--......+.++|+- +.|-..|.+-.|+.+ ++.. .++ ++|| |.||. .+..+++|||+.+
T Consensus 27 ~KVL~Af~~~~vs~~hf~~tTGYGY~D~GRd~le~iyA~vf----gaE~-ALVRpq~vSG-THAi~~~Lfg~LrpGD~ll 100 (403)
T PF06838_consen 27 LKVLKAFQENRVSDSHFAGTTGYGYDDIGRDKLERIYADVF----GAED-ALVRPQFVSG-THAIALALFGVLRPGDELL 100 (403)
T ss_dssp HHHHHHHHHTT--GGGCS---TT-TT-HHHHHHHHHHHHHC----T-SE-EEEETTS-SH-HHHHHHHHHHH--TT-EEE
T ss_pred HHHHHHHHHcCCChhhcCCCCcCCCCCccHHHHHHHHHHHh----Cchh-hhhcccccch-HHHHHHHHHhcCCCCCeEE
Confidence 4566777664433333455556644 345555555555554 5432 222 4455 55555 4899999999998
Q ss_pred Ee-CCCChhhhhhHHHhCC-cccccccccccceEEEeecCccCCcccCC-CC--CCCccEEEEc-CCCCccccCCCHHHH
Q 045431 154 VQ-DPSYPAYVDSSVIMGQ-TGEFQKDAEKYGKIEYMRCTAENGFFPDL-ST--VARTDIIFFC-SPNNPTGAAATREQL 227 (433)
Q Consensus 154 ~~-~p~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~i~l~-~p~nPtG~~~~~~~~ 227 (433)
.. -.-|.....++-..|. .|-+..+|. ....+++.+++.++.+. ++ .+++|++++. +.-+.+=-.++.+++
T Consensus 101 ~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi---~Y~~v~L~~dg~~D~~~i~~~~~~~tk~v~IQRSrGYs~R~sl~i~~I 177 (403)
T PF06838_consen 101 SITGKPYDTLEEVIGIRGNGPGSLKEFGI---KYREVPLTEDGTIDWEAIKKALKPNTKMVLIQRSRGYSWRPSLTIEEI 177 (403)
T ss_dssp ESSSS--CCHHHHHTSSSSSSSSTGGGT----EEEE--B-TTSSB-HHHHHHHHHTTEEEEEEE-S-TTSSS----HHHH
T ss_pred EcCCCchhhHHHHhCCCCCCCCChHHhCc---eeEEEeecCCCCcCHHHHHHhhccCceEEEEecCCCCCCCCCCCHHHH
Confidence 63 3334444443332331 233555664 44556666655544431 11 3789999997 667777778899999
Q ss_pred HHHHHHHHHc--CCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccc--eeeeeccccccccCCcch
Q 045431 228 TRLVQFAKDN--GSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVR--LGWTVIPKELLFSDGFPV 303 (433)
Q Consensus 228 ~~i~~~a~~~--~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r--~G~l~~~~~~~~~~~~~~ 303 (433)
+++++++++. ++++++|.+|++|+-...|... + -.+..||+-|..| .|+- -||++++++++
T Consensus 178 ~~~i~~vk~~~p~~iifVDNCYGEFvE~~EP~~v----G---ADl~aGSLIKNpG-GgiAptGGYIaGr~~lV------- 242 (403)
T PF06838_consen 178 KEIIKFVKEINPDVIIFVDNCYGEFVETQEPTEV----G---ADLMAGSLIKNPG-GGIAPTGGYIAGRKDLV------- 242 (403)
T ss_dssp HHHHHHHHHH-TTSEEEEE-TTTTTTSSS-GGGG----T----SEEEEETTSGGG-TTT-SS-EEEEESHHHH-------
T ss_pred HHHHHHHHhhCCCeEEEEeCCcceeccccCcccc----c---hhheeccceeCCC-CCccCcCCEEechHHHH-------
Confidence 9999999864 6899999999999876555433 1 1388999999987 6652 47999999986
Q ss_pred hHHHHHHHhhc----cCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCC----ccEEEEE
Q 045431 304 AKDFNRIVCTC----FNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKN----APYVWVQ 375 (433)
Q Consensus 304 ~~~~~~~~~~~----~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~----g~~~~~~ 375 (433)
+......... ..+.+.-... .+++ +.-.-..+...--+-.-+....|+++|+++.+... -..-.+.
T Consensus 243 -e~~a~RLTaPGiG~e~G~t~~~~R---~~~Q--GlFlAP~vV~eAlKgaif~A~~fe~lG~~v~P~~~~~R~DiIQai~ 316 (403)
T PF06838_consen 243 -ERAAYRLTAPGIGKEVGATLGTNR---LMFQ--GLFLAPHVVGEALKGAIFAAALFEKLGFEVSPKPDDPRSDIIQAIE 316 (403)
T ss_dssp -HHHHHHHS-TTTGGGSS--TTTHH---HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHTT-EEES-TTS--SSS-EEEE
T ss_pred -HHHHhhhcCCccccccccCcchHH---HHHh--HHhhchHHHHHHHHHHHHHHHHHHHcCCcCCCCCCCCCCceEEEEE
Confidence 3332211111 1111111111 1111 11111333333344445556678888999876432 3456677
Q ss_pred CCC
Q 045431 376 FPG 378 (433)
Q Consensus 376 ~~~ 378 (433)
+..
T Consensus 317 l~~ 319 (403)
T PF06838_consen 317 LGS 319 (403)
T ss_dssp -SS
T ss_pred CCC
Confidence 763
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=99.13 E-value=1e-08 Score=97.23 Aligned_cols=317 Identities=15% Similarity=0.155 Sum_probs=161.7
Q ss_pred ecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCC-----CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHH
Q 045431 68 LGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA-----EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRL 142 (433)
Q Consensus 68 l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~-----~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l 142 (433)
++.|..+.-.|+.+.+.+.+ +. ..++.|+| ++|..+.--....++.+..|.+.-|.-+-.|++++-.++
T Consensus 70 iG~G~y~~~~P~~i~~~i~~---~~---ef~TaYtPYQpEisQG~Lq~lfe~Qs~i~eLTGmdvaNaSlyd~atA~aEa~ 143 (429)
T PF02347_consen 70 IGAGSYTHYVPAVIDRNILS---RP---EFYTAYTPYQPEISQGRLQALFEYQSMICELTGMDVANASLYDGATAAAEAM 143 (429)
T ss_dssp --CTTT-----HHHHH-HHC---CH---HCCCS-STTSGGGBHHHHHHHHHHHHHHHHHHTSSEE-SEBSSCCHHHHHHH
T ss_pred ccccccCceeChhhcCcccc---Ch---hhhccCCCCCcHHHHHHHHHHHHHHHHHHHhhCCCccCCCCCChhHHHHHHH
Confidence 35555544456655542222 22 23344544 344444333333334443366655667778888776653
Q ss_pred ---HHhc-CCCCEEEEeCCCChhhhhhHHHhCC-cccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCc
Q 045431 143 ---QIVF-GSNVTMAVQDPSYPAYVDSSVIMGQ-TGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNP 217 (433)
Q Consensus 143 ---~~l~-~~gd~Vl~~~p~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nP 217 (433)
...- +.+++|++++-.|+.+...++.... .+ .+++.++.++++..+ .+++.+|++.+|++
T Consensus 144 ~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g---------~~iv~~~~~~~~~~d-----~~~~a~v~vq~Pn~- 208 (429)
T PF02347_consen 144 LMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAPLG---------IEIVEVPLDEDGTTD-----DDDTAAVMVQNPNT- 208 (429)
T ss_dssp HHHHHHHTT---EEEEETTS-CHHHHHHHHHCCHCC---------EEEEEE-BBTTCSB------STTEEEEEEESS-T-
T ss_pred HHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhhCC---------eEEEEecccccCCcc-----ccCeEEEEeecCCC-
Confidence 2233 3346999999999998886664432 12 377777776543222 46888999999965
Q ss_pred cccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccc----cccceeeeeccc
Q 045431 218 TGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGF----TGVRLGWTVIPK 293 (433)
Q Consensus 218 tG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~----~G~r~G~l~~~~ 293 (433)
.|..-+ +++|.++++++|.++++ .+.- ..... ..+-.++ +-.|++++ +|.||. .|--.|++.+++
T Consensus 209 ~G~~ed---~~~i~~~~h~~gal~~~-~ad~-~aL~~-l~~Pge~----GADI~vg~-~Q~fg~p~~~GGP~~G~~a~~~ 277 (429)
T PF02347_consen 209 FGVFED---IKEIADIAHAAGALVIV-GADP-NALGG-LKSPGEY----GADIVVGE-HQTFGIPMGFGGPGAGFFAVRE 277 (429)
T ss_dssp TSB--T---HHHHHHHHHHTT-EEEE-CGGC-CGCCT-C--GGGG----T-SEEEEC-CTTTT---CCC-S--EEEEE-G
T ss_pred CceEee---HHHHHHHHHHcCCEEEE-ecCH-HHHhC-cCChhhc----CccEEeeC-CCCCcccCCCCCCCeeeEEEhh
Confidence 788644 99999999999999886 3222 21111 1111222 22366877 888874 355689999998
Q ss_pred ccccc-------------C-------CcchhHHHHHHHhhccCCCcHHHH-HHHHHhcCcCChhHHHHHHHHHHHHHHHH
Q 045431 294 ELLFS-------------D-------GFPVAKDFNRIVCTCFNGASNISQ-AGGLACLSPEGFKAVHEVIGFYKENTDII 352 (433)
Q Consensus 294 ~~~~~-------------~-------~~~~~~~~~~~~~~~~~~~~~~~q-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 352 (433)
+++.. . ...-.+.++|.+..++.+++.... .++..++.-.+.+.+++..+....++.++
T Consensus 278 ~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl 357 (429)
T PF02347_consen 278 DLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYLGPEGLREIAERIHLNAHYL 357 (429)
T ss_dssp GGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhCCCceecccccccccceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 87632 0 011123456666555554443333 23333443345578899999999999999
Q ss_pred HHHHhhc-CCeeecCCCccE--EEEECCCCChHHHHHHHHHc---CCeEecCCCCCCCCCCCeEEEeec--cChhHHHHH
Q 045431 353 VETFNSL-GFKVYGGKNAPY--VWVQFPGRSSWDVFSEILEK---THVVTTPGSGFGPGGEGFIRVSAF--GHRGNVLEA 424 (433)
Q Consensus 353 ~~~l~~~-g~~~~~~~~g~~--~~~~~~~~~~~~~~~~l~~~---~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~l~~~ 424 (433)
.+.|++. +..+.. ..+| +....+. ....+++++ .|+... ....+.+-+|+. .+.++|+.+
T Consensus 358 ~~~L~~~~~~~~~~--~~f~e~v~~~~~~----~~~~~l~~~~~~~gl~~~------~~~~~~~li~~TE~~t~edid~l 425 (429)
T PF02347_consen 358 AERLKKIYGLPFDN--PFFFEFVVVFSKD----KEVEELLKRGIEGGLNLR------YPDDGALLICVTETRTKEDIDRL 425 (429)
T ss_dssp HHHHCCTTBECSSS--SSBSSEEEEESS-----HHHHHHHHTT----EEEG------GG-SSEEEEE--TT--HHHHHHH
T ss_pred HHHHHHhcCcccCC--CCceeeeeecCCc----HHHHHHHHHHHhcCCCcc------ccCCCeEEEEccCCCCHHHHHHH
Confidence 9999986 444332 3333 3333322 222223332 243332 223447777763 368889888
Q ss_pred HHHH
Q 045431 425 CKRF 428 (433)
Q Consensus 425 l~~l 428 (433)
++.|
T Consensus 426 v~~f 429 (429)
T PF02347_consen 426 VEAF 429 (429)
T ss_dssp HH--
T ss_pred HhcC
Confidence 8764
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=99.10 E-value=1e-07 Score=90.14 Aligned_cols=324 Identities=15% Similarity=0.145 Sum_probs=186.1
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR- 141 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~- 141 (433)
+-+|||-+-...-.+.+..|+++.. +-..|+.+.....|.+.+++.+ |. +.++.|..+..+-.+
T Consensus 41 dV~IDLrSDTgT~apS~~m~aAM~~---------GDD~Y~gdpSv~~Lee~vael~----G~--E~alpthqGRgaE~Il 105 (467)
T TIGR02617 41 DVFIDLLTDSGTGAVTQSMQAAMMR---------GDEAYSGSRSYYALAESVKNIF----GY--QYTIPTHQGRGAEQIY 105 (467)
T ss_pred CeEEECccCCCCCCCCHHHHHHHHc---------CCcccccCchHHHHHHHHHHHh----CC--ceEEECCCCchHHHHH
Confidence 3468886544332356777777775 1235777888899999999997 54 357777666666665
Q ss_pred HHHhcC-CCCEEEEeCC----CChh-h---hhhHHHhCCcccccccccccceEEEeec----------CccCCcccC-CC
Q 045431 142 LQIVFG-SNVTMAVQDP----SYPA-Y---VDSSVIMGQTGEFQKDAEKYGKIEYMRC----------TAENGFFPD-LS 201 (433)
Q Consensus 142 l~~l~~-~gd~Vl~~~p----~~~~-~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~-~~ 201 (433)
+..+++ |||.+++..+ .+.. + .......|. .+..++. ...++++.+ ++
T Consensus 106 ~~~~~~~~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~------------~~~~l~~~ea~~~~~~~~fkG~~dl~~le 173 (467)
T TIGR02617 106 IPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGC------------TARNVYTKEAFDTGVRYDFKGNFDLEGLE 173 (467)
T ss_pred HHhhcccccccccccccccccceEEEEecchHHHHHcCc------------eeecccchhhcccccCCCCCCCcCHHHHH
Confidence 466777 7888876554 1111 1 223444553 2332211 111222222 11
Q ss_pred C---C---CCccEEEEcCCCC-ccccCCCHHHHHHHHHHHHHcCCEEEEeccccc----c------ccCCCCCccccc--
Q 045431 202 T---V---ARTDIIFFCSPNN-PTGAAATREQLTRLVQFAKDNGSIIVYDSAYAL----Y------ISDDNPRSIFEI-- 262 (433)
Q Consensus 202 ~---~---~~~~~i~l~~p~n-PtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~----~------~~~~~~~~~~~~-- 262 (433)
. . .++..+..+--+| --|+++|.+.++++.++|++||+.++.|.+--. | .+. ..++.++
T Consensus 174 ~~I~~~g~~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~--~~si~eI~r 251 (467)
T TIGR02617 174 RGIEEVGPNNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYK--NWSIEQITR 251 (467)
T ss_pred HHHhhcCCCCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhc--CCCHHHHHH
Confidence 1 0 2233322221123 348999999999999999999999999986432 1 112 2333333
Q ss_pred --CCCCcceEEEeccccccccc-ccceeeeeccccccccCCcchhHHHHHHHh--------hccCCCcHHHHHHHHHhcC
Q 045431 263 --PGAKEVAIETSSFSKYAGFT-GVRLGWTVIPKELLFSDGFPVAKDFNRIVC--------TCFNGASNISQAGGLACLS 331 (433)
Q Consensus 263 --~~~~~~vi~i~S~sK~~~~~-G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~q~~~~~~l~ 331 (433)
....| .+.-|+||.++.| | |+++++++.+ .+.+.+.+. .+..+.+.-...+...-|.
T Consensus 252 E~~~~aD--svt~slsKglgApvG---g~Lag~d~~~-------~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~ 319 (467)
T TIGR02617 252 ETYKYAD--MLAMSAKKDAMVPMG---GLLCFKDDSF-------FDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLY 319 (467)
T ss_pred HhhccCC--EEEEEcCCCCCCccc---ceEEecchhH-------HHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhh
Confidence 12223 4456899998766 5 6888887721 111222111 1122344444554444444
Q ss_pred cCCh-hHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEEC----CC-----CChHHHHHHHHHcCCeEecC-CC
Q 045431 332 PEGF-KAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQF----PG-----RSSWDVFSEILEKTHVVTTP-GS 400 (433)
Q Consensus 332 ~~~~-~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~----~~-----~~~~~~~~~l~~~~gi~v~~-g~ 400 (433)
+... .++..+. ...++|.+.|.+.|+.+.. .+|.-++++- |+ .....+..+|-.+.||.-.- |+
T Consensus 320 e~~~~~yl~~ri----~qv~yl~~~L~~~Gvpi~~-~Gghav~iDa~~~lphip~~~fpa~al~~~ly~~~GiR~~e~G~ 394 (467)
T TIGR02617 320 DGMNLDWLAYRI----NQVQYLVNGLEEIGVVCQQ-AGGHAAFVDAGKLLPHIPADQFPAHALACELYKVAGIRAVEIGS 394 (467)
T ss_pred hcccHHHHHHHH----HHHHHHHHHHHhCCCcEEe-cCccEEEEehhhhCCCCChhhCcHHHHHHHHHHHcCcceEeecc
Confidence 3222 2333332 3446788889999999987 7888787753 32 24556777777787886422 22
Q ss_pred C-CC--CC-------CCCeEEEeec---cChhHHHHHHHHHHHhh
Q 045431 401 G-FG--PG-------GEGFIRVSAF---GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 401 ~-f~--~~-------~~~~iRi~~~---~~~~~l~~~l~~l~~~l 432 (433)
. ++ +. .-..+|+++- -|.+.++-..++|..+.
T Consensus 395 ~~~~rd~~~~~~~~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~ 439 (467)
T TIGR02617 395 LLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVK 439 (467)
T ss_pred eecccCCCCCccCCCccceeeeccccccccHhHHHHHHHHHHHHH
Confidence 2 11 11 1257999962 37888888888887764
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.1e-08 Score=87.89 Aligned_cols=345 Identities=14% Similarity=0.137 Sum_probs=193.6
Q ss_pred EEecCCCCCCCChHHHHHHHHHHHhhcccCCCCC--CCCCCCCCHHHHHHHHHHHh-ccCCCCCC----cEEEcCChHHH
Q 045431 66 ISLGIGDTTEPIPEVITSALAKRSYALSTQEGYS--GYGAEQGEKPLRAAIASTFY-KDLGIEEG----DIFVSDGAKCD 138 (433)
Q Consensus 66 i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~Y~~~~g~~~lr~~la~~l~-~~~~~~~~----~i~~~~G~~~a 138 (433)
|.|=-.++ -....+.+++-..+.+... .++. +|.-..-.-+-.+.+++.-. .-++++|+ ||..-+|+.+.
T Consensus 43 ieLIaSEN--Fts~aVmeAlGS~ltNKYS-EGyPG~RYYGGne~ID~iE~LCq~RALeaF~ldp~kWGVNVQp~SGSPAN 119 (477)
T KOG2467|consen 43 IELIASEN--FTSRAVMEALGSCLTNKYS-EGYPGARYYGGNEYIDQIELLCQKRALEAFGLDPEKWGVNVQPYSGSPAN 119 (477)
T ss_pred eeEeeccc--chHHHHHHHHhHHhhcccc-cCCCcccccCcchHHHHHHHHHHHHHHHHhCCCHHHCceeeccCCCCchh
Confidence 44444443 2567788888888765432 2222 33222222233333333321 13456654 78888999998
Q ss_pred HHHHHHhcCCCCEEEEeCCCChhh-hhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC------CCCccEEEE
Q 045431 139 ISRLQIVFGSNVTMAVQDPSYPAY-VDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST------VARTDIIFF 211 (433)
Q Consensus 139 l~~l~~l~~~gd~Vl~~~p~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~l 211 (433)
+....++++|+|+|.-.+.-..+. .+....-+. .+ .....|.+-.++.+++..++ .|++. .-++++|+-
T Consensus 120 favYtall~Ph~RiMGLDLP~GGHLsHGy~T~~k-kI--Sa~SiyFeSmPYkv~~~TG~-IDYD~Le~~A~~frPk~iia 195 (477)
T KOG2467|consen 120 FAVYTALLKPHERIMGLDLPSGGHLSHGYQTPTK-KI--SATSIYFESMPYKVDPSTGY-IDYDKLEKTATLFRPKLIIA 195 (477)
T ss_pred hHHHhhhcCCCCeeeeccCCCCCccccccccCCc-ee--eeeeeecccCceeeCCCCCc-eehHHHHHHHHhcCCcEEEe
Confidence 888899999999985433222222 111111111 00 01111223333445555443 23222 357886653
Q ss_pred cCCCCccccCCCHH-HHHHHHHHHHHcCCEEEEecccc-ccccCCC-CCcccccCCCCcceEEEecccccccccccceee
Q 045431 212 CSPNNPTGAAATRE-QLTRLVQFAKDNGSIIVYDSAYA-LYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGW 288 (433)
Q Consensus 212 ~~p~nPtG~~~~~~-~~~~i~~~a~~~~~~li~De~~~-~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~ 288 (433)
-. ..|+.. +-.++.++|.+.|.+++.|-+|- +++..+. |.|+ +. ..|+..+.+|++ .|-|-|.
T Consensus 196 G~------SaY~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPF-ey-----~DiVTTTTHKsL--RGPRg~m 261 (477)
T KOG2467|consen 196 GT------SAYSRLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPF-EY-----CDIVTTTTHKSL--RGPRGAM 261 (477)
T ss_pred cc------ccchhhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcc-cc-----cceeeccccccc--cCCccee
Confidence 12 223322 45777777889999999999985 4655554 3333 22 238888999987 8999999
Q ss_pred eeccccccccC-------CcchhHHHHHHHhhccCCCcHHHHH-HHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcC
Q 045431 289 TVIPKELLFSD-------GFPVAKDFNRIVCTCFNGASNISQA-GGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLG 360 (433)
Q Consensus 289 l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 360 (433)
+..++.+-..+ ...+.++++........+.+.-... +.+-+|..-.........+++.++.+.+.+.|.+.|
T Consensus 262 IFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~tpefk~Yq~qV~~Nakala~~l~~~G 341 (477)
T KOG2467|consen 262 IFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKEYQKQVLKNAKALASALISRG 341 (477)
T ss_pred EEEeccCCcCCCCCCCcceechhhhhhhhccccccCCCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88877553222 2233344443222222222222222 222334333334457778888999999999999999
Q ss_pred CeeecC-CCccEEEEECCC-CChHHHHHHHHHcCCeEecCCCCCCC---CCCCeEEEee--cc----ChhHHHHHHHHHH
Q 045431 361 FKVYGG-KNAPYVWVQFPG-RSSWDVFSEILEKTHVVTTPGSGFGP---GGEGFIRVSA--FG----HRGNVLEACKRFK 429 (433)
Q Consensus 361 ~~~~~~-~~g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~~---~~~~~iRi~~--~~----~~~~l~~~l~~l~ 429 (433)
++++.. .....+.+++.+ ..+...++..++..+|.++--..++. -.++.|||.. .+ .++|+++..+-|.
T Consensus 342 y~lvtgGTDnHlvLvDLr~~G~dGarvE~vle~~~I~~NKNtvpGD~Sal~PgGiRiGtPAmTsRG~~e~df~~v~~fi~ 421 (477)
T KOG2467|consen 342 YKLVTGGTDNHLVLVDLRPKGVDGARVEKVLELCHIALNKNTVPGDKSALSPGGIRIGTPAMTSRGFGEEDFEKVADFID 421 (477)
T ss_pred ceEecCCccceEEEEeccccCCchHHHHHHHHHhhhhhcCCcCCCCccccCCCceeccchhhcccCccHHHHHHHHHHHH
Confidence 988643 334457778762 23344556666767887765544432 2367899993 22 3788887777665
Q ss_pred Hh
Q 045431 430 HL 431 (433)
Q Consensus 430 ~~ 431 (433)
++
T Consensus 422 ~a 423 (477)
T KOG2467|consen 422 RA 423 (477)
T ss_pred HH
Confidence 54
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.9e-08 Score=94.73 Aligned_cols=260 Identities=14% Similarity=0.132 Sum_probs=151.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhccCCCCC-------CcEEEcCChHHHHHH-HH----Hhc----CC-----CC-EEEEe
Q 045431 98 YSGYGAEQGEKPLRAAIASTFYKDLGIEE-------GDIFVSDGAKCDISR-LQ----IVF----GS-----NV-TMAVQ 155 (433)
Q Consensus 98 ~~~Y~~~~g~~~lr~~la~~l~~~~~~~~-------~~i~~~~G~~~al~~-l~----~l~----~~-----gd-~Vl~~ 155 (433)
...|...+...++...+.+|+.+.++.+. ..=++|+|+++++.. +. .+. .. +. .|++.
T Consensus 68 ~~~~~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s 147 (373)
T PF00282_consen 68 GFTWEASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVS 147 (373)
T ss_dssp TTSTTTSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEE
T ss_pred ccccccccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccc
Confidence 34554556788999999999998666551 235678888877643 31 111 11 12 56667
Q ss_pred CCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC-------CCCcc-EEEEcCCCCccccCCCHHH
Q 045431 156 DPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST-------VARTD-IIFFCSPNNPTGAAATREQ 226 (433)
Q Consensus 156 ~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~-~i~l~~p~nPtG~~~~~~~ 226 (433)
+-+|.+...++..+| ..++.+|+++++..+.+ +++ ...+- +|+.+-....||.+ +.
T Consensus 148 ~~aH~S~~Kaa~~lG------------lg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~---D~ 212 (373)
T PF00282_consen 148 EQAHYSIEKAARILG------------LGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAI---DP 212 (373)
T ss_dssp TTS-THHHHHHHHTT------------SEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB----S
T ss_pred cccccHHHHhcceee------------eEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccc---cC
Confidence 779999999999999 47889999875443332 221 11222 44555667888886 55
Q ss_pred HHHHHHHHHHcCCEEEEeccccccccC-CCC-CcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcchh
Q 045431 227 LTRLVQFAKDNGSIIVYDSAYALYISD-DNP-RSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVA 304 (433)
Q Consensus 227 ~~~i~~~a~~~~~~li~De~~~~~~~~-~~~-~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~ 304 (433)
+++|.++|+++++++.+|.+|+...+- ... .-+..++.. .=+.-+++|+++ ....+|+++.++...........
T Consensus 213 l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~a---dSit~d~HK~l~-~P~~~~~~l~r~~~~l~~~~~~~ 288 (373)
T PF00282_consen 213 LEEIADICEKYNIWLHVDAAYGGSALLSPEYRHLLFGIERA---DSITIDPHKWLG-VPYGCGVLLVRDKSDLRDAFSIN 288 (373)
T ss_dssp HHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGE---SEEEEETTTTTS--SSS-EEEEESSGGGHHGGGEEE
T ss_pred HHHHhhhccccceeeeecccccccccccccccccccccccc---cccccchhhhhc-CCccceeEEeecccchHHHhccC
Confidence 899999999999999999999973221 111 112222221 133447899997 77789998888764311000000
Q ss_pred HH-HH----------HHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCCccEE
Q 045431 305 KD-FN----------RIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAPYV 372 (433)
Q Consensus 305 ~~-~~----------~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~ 372 (433)
.. +. .....+..++-......+...++..+.+.+++..++..+.++.+.+.+++. ++++..+..-..+
T Consensus 289 ~~Yl~~~~~~~~~~~~~~~~tl~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~~~~~~~v 368 (373)
T PF00282_consen 289 ADYLGNDDRESDESYDYGDYTLQGSRRFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVNEPDLNIV 368 (373)
T ss_dssp ETCTT-S-SSS-GGGCEEEGSSSSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSTTSSSEE
T ss_pred hhhhcccccccccccccccccccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCceEE
Confidence 00 00 000001111112222223334444445677888888899999999999988 6888766666666
Q ss_pred EEEC
Q 045431 373 WVQF 376 (433)
Q Consensus 373 ~~~~ 376 (433)
.+++
T Consensus 369 cFr~ 372 (373)
T PF00282_consen 369 CFRY 372 (373)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6653
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.4e-06 Score=80.84 Aligned_cols=328 Identities=14% Similarity=0.152 Sum_probs=191.5
Q ss_pred EecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCC--CCCHHHHHHHHHH---HhccCCCCCCcEEEcCChHHHHHH
Q 045431 67 SLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAE--QGEKPLRAAIAST---FYKDLGIEEGDIFVSDGAKCDISR 141 (433)
Q Consensus 67 ~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~--~g~~~lr~~la~~---l~~~~~~~~~~i~~~~G~~~al~~ 141 (433)
-++.|.++--.|+.+.+-+.+. ...+..|+|- .-....-++|=+| +....|.+..|--+-.+++++-++
T Consensus 79 fiG~GyY~~~~P~vI~rnile~------pewyTaYTPYQpEISQGrLqaLfefQtlv~dLTGm~VANASm~DeaTAaAEA 152 (450)
T COG0403 79 FIGAGYYDTYTPPVILRNILEN------PEWYTAYTPYQPEISQGRLEALFEFQTLVADLTGLDVANASMLDEATAAAEA 152 (450)
T ss_pred hccCcccCCcCcHHHHHHhhcC------ccccccCCCCchhhhhHHHHHHHHHHHHHHHHhCCCcccchhhhhHHHHHHH
Confidence 4578888777888877666552 2556666552 1222222333332 222236666666677777777664
Q ss_pred -H--HHhcC-CCCEEEEeCCCChhhhhhHHHhCCc-ccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCC
Q 045431 142 -L--QIVFG-SNVTMAVQDPSYPAYVDSSVIMGQT-GEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNN 216 (433)
Q Consensus 142 -l--~~l~~-~gd~Vl~~~p~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~n 216 (433)
+ ...-+ +.++++++.-+|+...+.++..-.. + .+++..+.++... .... ...++-++++.+|+
T Consensus 153 m~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g---------~~i~~~~~~d~~~-l~~~-~~~~~~gv~vQyP~- 220 (450)
T COG0403 153 MLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLG---------IEIEVVDADDLDD-LESA-DDGDVFGVLVQYPN- 220 (450)
T ss_pred HHHHHHhhcCcCceEEecCCCCHHHHHHHHhhcccCc---------eEEEEeccchhhh-hhhc-cccCeEEEEEecCC-
Confidence 2 33333 3589999999999998887654321 1 2455555542111 1111 23467788887885
Q ss_pred ccccCCCHHHHHHHHHHHHHcCCEEEEe-ccccccccCCCCCcccccCCCCcceEEEecccc---cccccccceeeeecc
Q 045431 217 PTGAAATREQLTRLVQFAKDNGSIIVYD-SAYALYISDDNPRSIFEIPGAKEVAIETSSFSK---YAGFTGVRLGWTVIP 292 (433)
Q Consensus 217 PtG~~~~~~~~~~i~~~a~~~~~~li~D-e~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK---~~~~~G~r~G~l~~~ 292 (433)
-+|. ..+++++|.+.+++++.++++= |.-+ + .+...++..+-.|++|+... =+|++|-.+||..+.
T Consensus 221 ~~G~--~~~d~~~l~~~~h~~~al~~v~aDpla-L-------~LL~pPGe~GADIvvG~~QrfGvPmgfGGPhag~fA~~ 290 (450)
T COG0403 221 TFGI--VEEDLRALIEAAHSAGALVIVAADPLA-L-------GLLKPPGEFGADIVVGSAQRFGVPMGFGGPHAGYFAVK 290 (450)
T ss_pred CCCc--cchhHHHHHHHHhhcCCEEEEEechhH-h-------hccCCccccCCceEEecCcccCCCcCCCCcceeeeeEh
Confidence 4663 2556999999999999887742 2111 1 11122222233488887654 233456778999888
Q ss_pred cccccc--------------------CCcchhHHHHHHHhhccCCCcHHHHHHHHHhcC-cCChhHHHHHHHHHHHHHHH
Q 045431 293 KELLFS--------------------DGFPVAKDFNRIVCTCFNGASNISQAGGLACLS-PEGFKAVHEVIGFYKENTDI 351 (433)
Q Consensus 293 ~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~-~~~~~~~~~~~~~~~~~~~~ 351 (433)
+++... ...+-.+.++|-+..++.+++....+.+..+.- -.+-..++++..+..+...+
T Consensus 291 ~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaLlA~~As~y~~~hGp~GLk~iA~r~~~~a~~ 370 (450)
T COG0403 291 DEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQALLALAASMYAVYHGPQGLKEIAERIHRLAAY 370 (450)
T ss_pred HhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 887531 011223346666666666655444333332222 23346789999999999999
Q ss_pred HHHHHhhc--CCeeecCCCccE--EEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHH
Q 045431 352 IVETFNSL--GFKVYGGKNAPY--VWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEAC 425 (433)
Q Consensus 352 l~~~l~~~--g~~~~~~~~g~~--~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l 425 (433)
+.+.|++. |+++... .+| +.++++......++.+.. ..|+-++.- ..+++=+++ ..+.++++.++
T Consensus 371 la~~L~~~~~g~~~~~~--~fFdt~~v~~~~~~~~~l~~~~~-~~G~~L~~~------~~~~~~ia~tEt~t~~~i~~l~ 441 (450)
T COG0403 371 LAAGLKEIGAGVELVFD--HFFDTFTVRVPEEVAEALLAAAI-AGGINLRRV------DADTVLIALTETTTKEDIDALV 441 (450)
T ss_pred HHHHHhhcCCceEeccc--cceeeEEEecchhHHHHHHHHHH-hcCCceeee------cCCceEEEeecccCHHHHHHHH
Confidence 99999965 5777653 555 445555322333333333 347777542 233566666 34689999999
Q ss_pred HHHHHh
Q 045431 426 KRFKHL 431 (433)
Q Consensus 426 ~~l~~~ 431 (433)
+.+...
T Consensus 442 ~~~~~~ 447 (450)
T COG0403 442 AAFGGV 447 (450)
T ss_pred HHHhhh
Confidence 888654
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=8e-07 Score=82.35 Aligned_cols=341 Identities=13% Similarity=0.088 Sum_probs=201.6
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCC---CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA---EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDI 139 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~---~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al 139 (433)
..+|.|++..+.+.+-.+..-+-.... ..++-|.| .+|..++...+.+||..--|.+.=.+...+|++.=.
T Consensus 66 ~~m~PLGSCTMK~Np~~e~~~~~~p~f------~~iHP~~pe~~vqG~l~li~~Lq~~L~~ITG~DavsLQP~AGAqGE~ 139 (496)
T COG1003 66 RGMIPLGSCTMKLNPKAEMKPATWPEF------ANIHPFQPEEQVQGYLELIYELQEWLKEITGMDAVSLQPNAGAQGEY 139 (496)
T ss_pred cCccCCcccccccCchhhcccccccch------hhcCCCCChHHHHHHHHHHHHHHHHHHHhcCCceeeccCCCCcchhh
Confidence 467888887765433222111111111 22233333 578999999999999874444444444557776443
Q ss_pred ---HHHHHhc-CCC----CEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccE
Q 045431 140 ---SRLQIVF-GSN----VTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDI 208 (433)
Q Consensus 140 ---~~l~~l~-~~g----d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~ 208 (433)
.+|.... ..| +.+++++-.|........+.| .+++.+++++++..+.+ ++. .+++.+
T Consensus 140 aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASAam~G------------~~VV~V~~~~~G~VDlddLk~k~~~~~Aa 207 (496)
T COG1003 140 AGLLAIRAYHESRGEGHRNICLIPDSAHGTNPASAAMAG------------FKVVVVKCDENGNVDLDDLRAKAEDNLAA 207 (496)
T ss_pred HHHHHHHHHHHHcCCCcCcEEEeeccccCCChhhHhhcC------------ceEEEEecCCCCCccHHHHHHHhccceeE
Confidence 3344443 233 689999999988888888888 68999999988766554 222 367889
Q ss_pred EEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccc----cc
Q 045431 209 IFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFT----GV 284 (433)
Q Consensus 209 i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~----G~ 284 (433)
+.|+||+. .|.- .+.+++|+++.+++|..+..|.+.---..+ +.......-. |+=--++|+|+.| |-
T Consensus 208 lMiTnPsT-~GvF--E~~I~ei~~ivH~~Gg~vY~DGANlNA~vG-----~~rPGd~G~D-V~HlNLHKTF~iPHGGGGP 278 (496)
T COG1003 208 LMITNPST-LGVF--EEDIREICEIVHEAGGQVYYDGANLNAIVG-----LARPGDMGFD-VVHLNLHKTFCIPHGGGGP 278 (496)
T ss_pred EEeccCcc-cccc--hhhHHHHHHHHHHcCCEEEecCcchhhhhc-----cccccccccc-eEEeecccccccCCCCCCC
Confidence 99999954 5654 778999999999999999999886532211 1111111111 2223478887542 34
Q ss_pred ceeeeeccccccccCCc----chhHHH--H--H---HHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHH
Q 045431 285 RLGWTVIPKELLFSDGF----PVAKDF--N--R---IVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIV 353 (433)
Q Consensus 285 r~G~l~~~~~~~~~~~~----~~~~~~--~--~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 353 (433)
..|=|.+..++.-..-. .....+ . . .........|......+..++..-+.+.+++.-+..--+.+++.
T Consensus 279 G~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~Gs~~il~~a~~YI~~mG~~GL~~ase~AvLNANYia 358 (496)
T COG1003 279 GAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYGSASILPIAWAYIRMMGADGLKQASEVAVLNANYIA 358 (496)
T ss_pred CCCceehHhhccccCCCCcccCCCccccccCCCCccceeeccccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHH
Confidence 46666666555311000 000100 0 0 00111222344444445666665555667777777778889999
Q ss_pred HHHhhc-CCeeecCCCccE-EEEECC------CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec--cChhHHHH
Q 045431 354 ETFNSL-GFKVYGGKNAPY-VWVQFP------GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF--GHRGNVLE 423 (433)
Q Consensus 354 ~~l~~~-g~~~~~~~~g~~-~~~~~~------~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~l~~ 423 (433)
+.|+.. .+.+.+.....+ +.++.. +....+++++|+.- |+.- |.-.|...-.+.+-|-.. .+.+++++
T Consensus 359 ~rL~~~y~~~y~~~~~~~HE~ild~r~l~~~~Gv~~~DvAKrLlD~-GfHa-PT~~FPliV~~tLMIEPTEsEsk~eLDr 436 (496)
T COG1003 359 RRLKGYYPVPYTGENRVAHECILDARPLKKETGVRALDVAKRLLDY-GFHA-PTMYFPLIVAGTLMIEPTESESKEELDR 436 (496)
T ss_pred HHhhhcCccccCCCCcceeEEEeechHhHhhcCCcHHHHHHHHHhc-CCCC-CcccCccccccceeecCCCCCCHHHHHH
Confidence 999874 333332211122 334443 56778888888764 8876 444554333455655542 36788999
Q ss_pred HHHHHHHhh
Q 045431 424 ACKRFKHLY 432 (433)
Q Consensus 424 ~l~~l~~~l 432 (433)
.+++|.++.
T Consensus 437 f~dami~I~ 445 (496)
T COG1003 437 FIDAMIAIR 445 (496)
T ss_pred HHHHHHHHH
Confidence 999987763
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.8e-07 Score=79.64 Aligned_cols=203 Identities=19% Similarity=0.290 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCCC-CCCCHHHHHHHHHHHhccCCCCCC--cEEEcCChHHHHHHHHHhcCCCCEEEEe
Q 045431 79 EVITSALAKRSYALSTQEGYSGYGA-EQGEKPLRAAIASTFYKDLGIEEG--DIFVSDGAKCDISRLQIVFGSNVTMAVQ 155 (433)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~Y~~-~~g~~~lr~~la~~l~~~~~~~~~--~i~~~~G~~~al~~l~~l~~~gd~Vl~~ 155 (433)
..++++.++.-.......+.++|+- +-|-..|.+-.|+-+ +.... ...+.||+.+.-.++..+++|||+.+..
T Consensus 38 ~kVL~AF~~~rvs~~hf~~stGYGydD~GRdtLe~vyA~vf----~aE~a~VRpq~isGTHAI~~aLfg~LRpgDell~i 113 (416)
T COG4100 38 KKVLEAFRHHRVSESHFTGSTGYGYDDLGRDTLERVYAQVF----GAEAALVRPQIISGTHAIACALFGILRPGDELLYI 113 (416)
T ss_pred HHHHHHHHhcccchhccCCCCCCCccccchhHHHHHHHHHh----ccccceeeeeeecchhHHHHHHHhccCCCCeEEEe
Confidence 4556666553322222234445644 567777777777776 44322 4457787766656789999999998764
Q ss_pred CC-CChhhhhhHHHhCC-cccccccccccceEEEeecCccCCcccC-C--CCCCCccEEEEc-CCCCccccCCCHHHHHH
Q 045431 156 DP-SYPAYVDSSVIMGQ-TGEFQKDAEKYGKIEYMRCTAENGFFPD-L--STVARTDIIFFC-SPNNPTGAAATREQLTR 229 (433)
Q Consensus 156 ~p-~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~i~l~-~p~nPtG~~~~~~~~~~ 229 (433)
.- -|....+.+-.-|. .+-+..++.+| ..+++..++..+.+ + ...+++|+|.+. +..+..--+++.+++++
T Consensus 114 ~G~PYDTLeevIG~rg~~~gSL~dfgi~Y---~~v~Lt~~gkiD~~~v~~~i~~~tkli~IQRS~GY~~RpS~~I~eI~~ 190 (416)
T COG4100 114 TGSPYDTLEEVIGLRGEGQGSLKDFGIKY---KAVPLTADGKIDIQAVKTAISDRTKLIGIQRSKGYAWRPSLSIAEIEE 190 (416)
T ss_pred cCCcchhHHHHhccCCCCcccHHHhCcce---eecccccCCcccHHHHHHhcCccceEEEEEeccCcCCCCcccHHHHHH
Confidence 32 34444444333331 12245555443 34555444333222 1 114789998886 55555556688999999
Q ss_pred HHHHHHHc--CCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccc--eeeeecccccc
Q 045431 230 LVQFAKDN--GSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVR--LGWTVIPKELL 296 (433)
Q Consensus 230 i~~~a~~~--~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r--~G~l~~~~~~~ 296 (433)
++++.++- ++++++|.+|++|.-...|... +-.+..||+-|.-| .|+- -||+.+..+++
T Consensus 191 ~i~~vk~inpn~ivFVDNCYGEFvE~~EPt~v-------GaDliAGSLIKNpG-GgiaktGGYiaGk~~~v 253 (416)
T COG4100 191 MITFVKEINPNVIVFVDNCYGEFVEEKEPTHV-------GADLIAGSLIKNPG-GGIAKTGGYIAGKAELV 253 (416)
T ss_pred HHHHHHhcCCCEEEEEeccchhhhhccCcccc-------chhhhccceeeCCC-CceeeccceeechHHHH
Confidence 99999874 6899999999998876545432 12277899999877 6642 37999998886
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.3e-07 Score=83.25 Aligned_cols=218 Identities=15% Similarity=0.123 Sum_probs=132.5
Q ss_pred CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHH-HHHHHhccCCC-CCCcEEEcCChHHHHHHH-HHhcCCCCEE
Q 045431 76 PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAA-IASTFYKDLGI-EEGDIFVSDGAKCDISRL-QIVFGSNVTM 152 (433)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~-la~~l~~~~~~-~~~~i~~~~G~~~al~~l-~~l~~~gd~V 152 (433)
...++..+++.+.+..+.+ + .|.-..|...-|-. ++..++ ++ ..+.++++++++.++.++ .++..++..|
T Consensus 38 ~~~~e~iea~~~~~~~~v~---L-e~~l~~g~~~~R~~~~~~~~~---~~~~aea~~ivnnn~aAVll~~~al~~~~EvV 110 (395)
T COG1921 38 LYSPEAIEAMKEAMRAPVE---L-ETDLKTGKRGARLTELAELLC---GLTGAEAAAIVNNNAAAVLLTLNALAEGKEVV 110 (395)
T ss_pred cCCHHHHHHHHHHhcccce---e-eeecccchhhHHHHHHHHHHh---cccchhheeeECCcHHHHHHHHhhhccCCeEE
Confidence 4677888888888775432 2 44343343333333 233221 33 367889999999998874 5555544444
Q ss_pred -----EEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCC--CCCCccEEEEc-CCCCccccCCCH
Q 045431 153 -----AVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS--TVARTDIIFFC-SPNNPTGAAATR 224 (433)
Q Consensus 153 -----l~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~l~-~p~nPtG~~~~~ 224 (433)
+++ +..+++.++++.+| +.++.+..... -...+++ -.+++++++-+ ++|.+.--.++
T Consensus 111 is~g~lV~-gg~~~v~d~~~~aG------------~~l~EvG~tn~-t~~~d~~~AIne~ta~llkV~s~~~~f~~~l~- 175 (395)
T COG1921 111 VSRGELVE-GGAFRVPDIIRLAG------------AKLVEVGTTNR-THLKDYELAINENTALLLKVHSSNYGFTGMLS- 175 (395)
T ss_pred EEcccccc-CCCCChhHHHHHcC------------CEEEEecccCc-CCHHHHHHHhccCCeeEEEEeecccccccccc-
Confidence 233 67788899999999 35555543221 1122222 24688877766 44443333344
Q ss_pred HHHHHHHHHHHHcCCEEEEeccccccccCC-CCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcch
Q 045431 225 EQLTRLVQFAKDNGSIIVYDSAYALYISDD-NPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPV 303 (433)
Q Consensus 225 ~~~~~i~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~ 303 (433)
.++++++|+++++++|+|++-....... ....+... +-.+++.|-.|.+ .|.+-|.++++++++
T Consensus 176 --~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la~----GaDLV~~SgdKll--gGPqaGii~GkKelI------- 240 (395)
T COG1921 176 --EEELVEIAHEKGLPVIVDLASGALVDKEPDLREALAL----GADLVSFSGDKLL--GGPQAGIIVGKKELI------- 240 (395)
T ss_pred --HHHHHHHHHHcCCCEEEecCCccccccccchhHHHhc----CCCEEEEecchhc--CCCccceEechHHHH-------
Confidence 6778889999999999999887543321 12223222 1238889999998 488899999999997
Q ss_pred hHHHHHHHhhccCCCcHHHHHHHHHhcC
Q 045431 304 AKDFNRIVCTCFNGASNISQAGGLACLS 331 (433)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~q~~~~~~l~ 331 (433)
+++++...........+..++..++|+
T Consensus 241 -~~lq~~~l~Ralrv~K~tla~l~~aLe 267 (395)
T COG1921 241 -EKLQSHPLKRALRVDKETLAALEAALE 267 (395)
T ss_pred -HHHHhhhhhhhhhcCcHhHHHHHHHHH
Confidence 555554433334444455544444443
|
|
| >COG1725 Predicted transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.4e-09 Score=82.88 Aligned_cols=47 Identities=15% Similarity=0.057 Sum_probs=40.4
Q ss_pred ccccccccccccccccCCChhhHHHHHhccccccc---cccCC-CCCCcHH
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGN---LGKLQ-AGYLFPE 48 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~---~~~l~-~g~~~~~ 48 (433)
+|+..+|.+|.|+||++|||.|+||..++||.||+ |..|. .|++...
T Consensus 18 ~qIk~~I~~g~l~pGdkLPSvRelA~~~~VNpnTv~raY~eLE~eG~i~t~ 68 (125)
T COG1725 18 NQIKEQIASGELKPGDKLPSVRELAKDLGVNPNTVQRAYQELEREGIVETK 68 (125)
T ss_pred HHHHHHHHhCCcCCCCCCCcHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe
Confidence 67889999999999999999999999999999995 66554 3776654
|
|
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.7e-06 Score=74.95 Aligned_cols=198 Identities=12% Similarity=0.107 Sum_probs=122.3
Q ss_pred CCccccCCC-HHHHHHHHHHHHHcCCEEEEeccccccccCCCC-CcccccCCCCcceEEEecccccccccccceeeeecc
Q 045431 215 NNPTGAAAT-REQLTRLVQFAKDNGSIIVYDSAYALYISDDNP-RSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIP 292 (433)
Q Consensus 215 ~nPtG~~~~-~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~-~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~ 292 (433)
+.=.|+++| ....+++++..+.+|-..|.||+.-+|..-|.. ..+..++-.+| |-++.|.+| .|..++.++..
T Consensus 219 QSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y~fiPD----IVtmgKpmG-NGhPVa~Vatt 293 (452)
T KOG1403|consen 219 QSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGSHYWAFQTYNFIPD----IVTMGKPMG-NGHPVAAVATT 293 (452)
T ss_pred HhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccchhhhhhhhhccccc----hheecccCC-CCCeeeEEecc
Confidence 444566665 457899999999999999999999988766542 22222222233 447899998 99999999999
Q ss_pred ccccccCCcchhHHHHH--HHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc--CCeeecCC-
Q 045431 293 KELLFSDGFPVAKDFNR--IVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL--GFKVYGGK- 367 (433)
Q Consensus 293 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g~~~~~~~- 367 (433)
+++- +.+.. +....+.+.++.+.++.++.++....+.++...+++ -+.+...|+++ ..+.++.-
T Consensus 294 keIA--------~Af~atgv~YFNTyGGnPVsCAv~laVm~v~e~E~Lq~ha~~v---G~~L~~lL~~~k~kh~~IGDvR 362 (452)
T KOG1403|consen 294 KEIA--------QAFHATGVEYFNTYGGNPVSCAVGLAVMRVCEDENLQEHAQQV---GEKLEVLLRRLKQKHECIGDVR 362 (452)
T ss_pred HHHH--------HHhccccceehhccCCCchhHHHHHHHHHHHhhhhHHHHHHHH---HHHHHHHHHHHhhhccceeccc
Confidence 8883 44432 334456678999999988888743333334444444 44444444443 23333322
Q ss_pred -CccEEEEECCC---------CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 368 -NAPYVWVQFPG---------RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 368 -~g~~~~~~~~~---------~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
-|+|+-+++-. ..+..++.++-+.++|.+..- ....+.+.|- ++-++++.++.+..|.++|
T Consensus 363 GvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLlsaD----GPh~NilKiKPPmCFneena~e~v~~ld~iL 435 (452)
T KOG1403|consen 363 GVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLSAD----GPHRNILKIKPPMCFNEENADEFVLGLDEIL 435 (452)
T ss_pred cceEEEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEecC----CCCCceeecCCCcccChhhHHHHHHHHHHHH
Confidence 45666666531 123345566666778888542 1234556655 3446777666666666554
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=5e-05 Score=78.92 Aligned_cols=315 Identities=13% Similarity=0.105 Sum_probs=182.4
Q ss_pred EEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCC-----CCCH----HHHHHHHHHHhccCCCCCCcEEEcCChH
Q 045431 66 ISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAE-----QGEK----PLRAAIASTFYKDLGIEEGDIFVSDGAK 136 (433)
Q Consensus 66 i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~-----~g~~----~lr~~la~~l~~~~~~~~~~i~~~~G~~ 136 (433)
.-++.|.++--.|..+.+.+.+.- ..++.|+|- +|.. ++...+++.. |.+..|--+-.|++
T Consensus 82 ~fiG~G~y~~~~P~vi~~~i~~~~------~~yTaYTPYQpEisQG~Lqal~e~Qtmi~~Lt----Gm~vaNASl~D~at 151 (954)
T PRK12566 82 SLIGMGYHGTVTPTVILRNVLENP------GWYTAYTPYQPEIAQGRLEALLNFQQMTIDLT----GLDLANASLLDEAT 151 (954)
T ss_pred ccccccccCCcCcHHHHHHHHhCc------hhhhcCCCCCchhhhHHHHHHHHHHHHHHHHh----Cchhhhhhhccchh
Confidence 456788877667887755555521 345556542 2322 2333344333 55555555556766
Q ss_pred HHHHH---HHHhcC-CCCEEEEeCCCChhhhhhHHHhCC-cccccccccccceEEEeecCccCCcccCCCCCCCccEEEE
Q 045431 137 CDISR---LQIVFG-SNVTMAVQDPSYPAYVDSSVIMGQ-TGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFF 211 (433)
Q Consensus 137 ~al~~---l~~l~~-~gd~Vl~~~p~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l 211 (433)
++-++ .....+ +..+|++++-.|+.+...++..-. .+ .+++.- ++...+ ..++-++++
T Consensus 152 A~aEA~~ma~~~~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g---------~~i~~~------~~~~~~--~~~~~~v~v 214 (954)
T PRK12566 152 AAAEAMALAKRVAKSKSNRFFVDEHCHPQTLSVLRTRAEGFG---------FELVVD------AVDNLA--AHAVFGALL 214 (954)
T ss_pred HHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHhhhcCC---------cEEEEc------chhhcC--CCCEEEEEE
Confidence 65553 223332 256899999999998877664431 11 133321 111111 135778888
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccc----ccccccee
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYA----GFTGVRLG 287 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~----~~~G~r~G 287 (433)
.+|+. .|.+ +++++|.+++++.|.++|+ .+.- +... +..-++..+-.|++|+ ++.| |.+|--.|
T Consensus 215 q~P~~-~G~i---~d~~~i~~~~h~~gal~~~-~~d~-laL~-----ll~~Pge~GADI~vG~-~Q~fGvp~~~GGP~ag 282 (954)
T PRK12566 215 QYPDT-HGEI---RDLRPLIDQLHGQQALACV-AADL-LSLL-----VLTPPGELGADVVLGS-TQRFGVPMGYGGPHAA 282 (954)
T ss_pred ECCCC-ceEE---ccHHHHHHHHHHcCCEEEE-EeCH-HHHh-----CCCChhhcCCcEEeeC-CCcCCCCCCCCCCCee
Confidence 88854 7887 4589999999999988662 2211 1111 1111122222366764 3433 34466689
Q ss_pred eeecccccccc--------------------CCcchhHHHHHHHhhccCCCcHHHHHHHHHhc-CcCChhHHHHHHHHHH
Q 045431 288 WTVIPKELLFS--------------------DGFPVAKDFNRIVCTCFNGASNISQAGGLACL-SPEGFKAVHEVIGFYK 346 (433)
Q Consensus 288 ~l~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l-~~~~~~~~~~~~~~~~ 346 (433)
|+.+++.+... ....-.+.++|-+..++.+++....+.+..++ --.+-+.++++.++..
T Consensus 283 ~~a~~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~a~~Y~~~~Gp~Gl~~ia~~~~ 362 (954)
T PRK12566 283 YFACRDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNICTAQVLLANIAGFYAVYHGPEGLKRIAQRVH 362 (954)
T ss_pred eeeehHHHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 99988877521 01122234566666666555544433333332 2234466788888999
Q ss_pred HHHHHHHHHHhhcCCeeecCCCccE--EEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHH
Q 045431 347 ENTDIIVETFNSLGFKVYGGKNAPY--VWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVL 422 (433)
Q Consensus 347 ~~~~~l~~~l~~~g~~~~~~~~g~~--~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~ 422 (433)
.+..++.+.|.+.|+++... .+| +.+++ +....++..+.++ .||-++-- +++.+.+|+ ..+.+|++
T Consensus 363 ~~a~~l~~~l~~~g~~~~~~--~fF~~~~v~~-~~~~~~~~~~a~~-~~~n~r~~------~~~~~~~s~de~~~~~~~~ 432 (954)
T PRK12566 363 RLTAILAAGLEAKGIKRLNR--HFFDTLTLEV-GGAQAAIIESAEA-ARINLRIL------GRGRLGVSLDETCDEATVA 432 (954)
T ss_pred HHHHHHHHHHHhcCCccccC--CccceEEEEc-cCCHHHHHHHHHH-CCCeeEEe------CCCeEEEEeCCCCCHHHHH
Confidence 99999999999999887643 455 33444 2245556665554 48888642 245788887 45789999
Q ss_pred HHHHHHH
Q 045431 423 EACKRFK 429 (433)
Q Consensus 423 ~~l~~l~ 429 (433)
.++..+.
T Consensus 433 ~~~~~f~ 439 (954)
T PRK12566 433 RLFDIFL 439 (954)
T ss_pred HHHHHhc
Confidence 9888773
|
|
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.3e-05 Score=70.66 Aligned_cols=329 Identities=14% Similarity=0.166 Sum_probs=175.0
Q ss_pred eEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCC--CCC-CCCCCHHHHHHHHHHHhccCCCCCC-cEEEcCCh-HHHH
Q 045431 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYS--GYG-AEQGEKPLRAAIASTFYKDLGIEEG-DIFVSDGA-KCDI 139 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~Y~-~~~g~~~lr~~la~~l~~~~~~~~~-~i~~~~G~-~~al 139 (433)
+.+|+.|. -..|+++++.+++.+..... .+.+ .-+ ...-...+-+...+.+...++++.+ .|++..|+ +...
T Consensus 6 ~~nFsaGP--a~lp~~vL~~a~~e~~~~~g-~g~svme~SHRsk~~~~v~~~a~~~lreLl~iPd~Y~VlflqGGat~qf 82 (365)
T COG1932 6 VYNFSAGP--AALPPEVLQQAQKELLDWNG-LGMSVMEISHRSKEFKNVLEEAEKDLRELLNIPDDYKVLFLQGGATGQF 82 (365)
T ss_pred CCCCCCCc--ccCCHHHHHHHHHHHhhhcc-CCcceeeeccccHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCccHHHH
Confidence 56777774 34677777777776655421 1111 111 1222233333333333334466543 66666555 5667
Q ss_pred HH-HHHhcCCCCEEEEeCCCChhh-hhhHHHhCCcccccccccccceEEEee-cCccCCcccCCCC--C-CCccEEEEcC
Q 045431 140 SR-LQIVFGSNVTMAVQDPSYPAY-VDSSVIMGQTGEFQKDAEKYGKIEYMR-CTAENGFFPDLST--V-ARTDIIFFCS 213 (433)
Q Consensus 140 ~~-l~~l~~~gd~Vl~~~p~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~-~~~~~i~l~~ 213 (433)
.+ .+.++.++..-.+..-.|... ..-.+.++... .+.... ...+-+..+++.. . .+..-|++|.
T Consensus 83 ~~~p~nLl~~~~~~yv~~g~Ws~~a~~eA~~~~~~~----------~~~~~~~~~~~~~~iP~~~~~~~~~~~ayv~~~~ 152 (365)
T COG1932 83 AMAPMNLLGKRGTDYVDTGAWSEFAIKEAKKVGKQP----------KLIDARIEEAGYGSIPDLSKWDFSDNDAYVHFCW 152 (365)
T ss_pred HHHHHhhhcccCceeEeeeehhHhHHHHHHHhcccc----------cccccceeccCccCCCChhhcccCCCccEEEEec
Confidence 76 477876553212233344432 12223333110 111111 0111222333332 1 1222266665
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccc
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPK 293 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~ 293 (433)
...-+|+-++. ...+.. +.++|.|..-.-+. .+.++..++ ++..|--|.+|..| ++.++.++
T Consensus 153 NeTi~Gv~v~~--~p~~~~-----~~~~v~D~SS~ils---r~iDvsk~d------viyagaQKnlGpaG--ltvvIvr~ 214 (365)
T COG1932 153 NETISGVEVPE--LPDIGS-----DGLLVADASSAILS---RPIDVSKYD------VIYAGAQKNLGPAG--LTVVIVRP 214 (365)
T ss_pred CCcccceEccC--CCCCCC-----CceEEEecccHHhc---CCCChhHcc------eEEEehhhccCccc--eEEEEEcH
Confidence 55667877662 222211 27788887655332 244444442 55567899999888 89999999
Q ss_pred cccccC----CcchhHHH-HHHHhhccCCCcHHHHHHHHHhcC----cCChhHHHHHHHHHHHHHHHHHHHHhhcCCee-
Q 045431 294 ELLFSD----GFPVAKDF-NRIVCTCFNGASNISQAGGLACLS----PEGFKAVHEVIGFYKENTDIIVETFNSLGFKV- 363 (433)
Q Consensus 294 ~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~q~~~~~~l~----~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~- 363 (433)
.++.+. .+.+..-. .....++.++++.++-+.+...++ .++ ++.+.++-+++.+.|.+.+.+.++.-
T Consensus 215 ~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GG---l~~~~~rn~~ka~~LY~~id~s~fy~~ 291 (365)
T COG1932 215 DLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGG---LEALEARNQAKAQLLYDWIDKSDFYRN 291 (365)
T ss_pred HHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 987442 11111111 112234445566665554443332 233 57778888899999999999875432
Q ss_pred --e-cCCCccEEEEECCCCC-hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc--ChhHHHHHHHHHHHhh
Q 045431 364 --Y-GGKNAPYVWVQFPGRS-SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG--HRGNVLEACKRFKHLY 432 (433)
Q Consensus 364 --~-~~~~g~~~~~~~~~~~-~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~--~~~~l~~~l~~l~~~l 432 (433)
. ...+-+.+.+++...+ +..++.++. ++|+...-|. .-.+.+|+++++ +.++++.+++-|+.+.
T Consensus 292 ~v~~~~RS~mnV~f~~~~~~ld~~fv~eae-~~gl~~lkGh----r~vgGmRasiynA~~~e~veaL~~fm~~f~ 361 (365)
T COG1932 292 LVAKANRSRMNVTFTLVDAELDKGFVAEAE-AAGLIYLKGH----RSVGGLRASIYNAVPLEDVEALTDFMDWFE 361 (365)
T ss_pred ccchhhccceeEEEEcCcHHHHHHHHHHHH-HcCCceeccc----cCCCceeeeeecCCCHHHHHHHHHHHHHHH
Confidence 1 2234567778877433 344555544 4577776662 123449999765 7899999998887753
|
|
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00019 Score=65.22 Aligned_cols=329 Identities=15% Similarity=0.157 Sum_probs=181.5
Q ss_pred eEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHH-H
Q 045431 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRL-Q 143 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l-~ 143 (433)
.|||-+-...-......|.++..-- ..|+-+.+...|..++.+.+ |. +.++.|.-+..|-+++ .
T Consensus 48 ~IDLLTDSGTgams~~qwaamm~GD---------EAYagsrs~~~L~~avkdif----Gf--q~~iPthQGRgAE~Il~~ 112 (471)
T COG3033 48 FIDLLTDSGTGAMTDKQWAAMMRGD---------EAYAGSRSYYALADAVKDIF----GF--QYTIPTHQGRGAENILIP 112 (471)
T ss_pred EEEeeccCCcccccHHHHHHHhccc---------hhhcccccHHHHHHHHHHhc----Cc--eeeeeccCCccHHHHHHH
Confidence 4666433323345666666665532 35666778899999999987 54 5677776666665543 3
Q ss_pred Hhc-----CCCCEEEEeCCCChhhh-hhHHHhCCcccccccccccceEEEeecCcc----------CCcccC-CCC----
Q 045431 144 IVF-----GSNVTMAVQDPSYPAYV-DSSVIMGQTGEFQKDAEKYGKIEYMRCTAE----------NGFFPD-LST---- 202 (433)
Q Consensus 144 ~l~-----~~gd~Vl~~~p~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~-~~~---- 202 (433)
.++ .||.+.++++..|.-.. ...+..|. .+.-++.+.. ++++.+ +++
T Consensus 113 i~ik~~~~~pg~~~~~~sN~~FdTTr~h~~~ng~------------~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lide 180 (471)
T COG3033 113 ILIKKGEQEPGSKMVAFSNYHFDTTRGHIQINGA------------TPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDE 180 (471)
T ss_pred HHhhhccccCCccccccccceecchhHHHHhcCC------------ccccccccccccccccCCCCCccCHHHHHHHHHH
Confidence 333 45555566667665433 33334442 2222222211 111111 111
Q ss_pred --CCCccEEEEc-CCCCccccCCCHHHHHHHHHHHHHcCCEEEEecccc-c---cccCCC----CCcccccCC----CCc
Q 045431 203 --VARTDIIFFC-SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYA-L---YISDDN----PRSIFEIPG----AKE 267 (433)
Q Consensus 203 --~~~~~~i~l~-~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~-~---~~~~~~----~~~~~~~~~----~~~ 267 (433)
..++-.|+++ +.|.-.|+..|.+.++++.++|++|+++++.|.+-. + |.-... ..++.++.. ..|
T Consensus 181 vG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD 260 (471)
T COG3033 181 VGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYAD 260 (471)
T ss_pred hCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhhh
Confidence 1456677776 556678999999999999999999999999998732 2 221111 123332210 011
Q ss_pred ceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHH-----hhccCCCcHHHHHHHHHhcCcCC-hhHHHHH
Q 045431 268 VAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIV-----CTCFNGASNISQAGGLACLSPEG-FKAVHEV 341 (433)
Q Consensus 268 ~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~ 341 (433)
-..-|.-|.- +..+ -|+++..++-.++ +-....... ..+..+.+.-...+.+.-|.+.. ..|+..+
T Consensus 261 --~~~mS~KKD~-lvnm-GGfl~~~D~~~fD----vy~~~~~~~V~~eG~~tYGgl~GrdmealAvGL~e~~~~~yl~~R 332 (471)
T COG3033 261 --GCTMSAKKDG-LVNM-GGFLCFKDDSFFD----VYEECRTLVVVQEGFPTYGGLAGRDMEALAVGLREGVNFDYLAHR 332 (471)
T ss_pred --hheeeccccc-eecc-ccEEEecCccHHH----HHHHHHhheEeeccccccCcccchhHHHHHHHHHHhcCcHHHHHH
Confidence 1122555632 2221 1678877763210 011111111 01112223333333333333222 2344444
Q ss_pred HHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECC----C-----CChHHHHHHHHHcCCeEecCCCCCCC--C-----
Q 045431 342 IGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFP----G-----RSSWDVFSEILEKTHVVTTPGSGFGP--G----- 405 (433)
Q Consensus 342 ~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~----~-----~~~~~~~~~l~~~~gi~v~~g~~f~~--~----- 405 (433)
. ..-++|.+.|++.|+.++.|.+|.-++++.. + ..+..+..+|-++.||...--..|.. +
T Consensus 333 v----~Qv~YL~~~l~~~GVpi~~paGGHavfvda~~~lphip~eqFpaqala~ely~e~GiRavElG~~~~~rd~ktg~ 408 (471)
T COG3033 333 V----AQVQYLADGLEEAGVPIVQPAGGHAVFVDAGKFLPHIPAEQFPAQALACELYKEAGIRAVELGSFSLGRDPKTGK 408 (471)
T ss_pred H----HHHHHHHHHHHhcCCeeEecCCCceEEeehhhhcCCCChhhCcHHHHHHHHHHHhCeeeeeeeceecccCCCccc
Confidence 4 3346788899999999998889888888753 2 24556788888888998755444421 1
Q ss_pred ----CCCeEEEeec---cChhHHHHHHHHHHHhh
Q 045431 406 ----GEGFIRVSAF---GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 406 ----~~~~iRi~~~---~~~~~l~~~l~~l~~~l 432 (433)
.-..+|+++- -+.+.++-.++.++++.
T Consensus 409 q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~ 442 (471)
T COG3033 409 QHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALK 442 (471)
T ss_pred cCCCchheeeEeccccccchhHHHHHHHHHHHHH
Confidence 1246999962 26777777777776653
|
|
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.2e-05 Score=70.73 Aligned_cols=294 Identities=13% Similarity=0.110 Sum_probs=165.1
Q ss_pred hHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcE-EEcCChHHHHHH-HHHh---c-C-CC-
Q 045431 78 PEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDI-FVSDGAKCDISR-LQIV---F-G-SN- 149 (433)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i-~~~~G~~~al~~-l~~l---~-~-~g- 149 (433)
++...+-+.+.+.+. +.....-| ++..++..+..+++++.++.+++.+ ..|+|+++++.+ .... . . .|
T Consensus 93 ~~~~~~l~~~~~~k~-N~l~~d~f---p~~~~~e~~~Vnm~~~L~~~~~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I 168 (491)
T KOG1383|consen 93 EPELDKLIMEAYNKF-NPLHPDEF---PVVRKLEAECVNMIANLFNAPSDSCGCGTVGGSESGLAAKKSYRNRRKAQKGI 168 (491)
T ss_pred CcchhhHHHHHHhhc-CccCcccc---chhHHHHHHHHHHHHHHhcCCccccCccccccchHHHHHHHHHHHHHHhccCC
Confidence 344444455555432 11222233 4778888888888877555554433 467888888443 2111 1 1 23
Q ss_pred --CEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEEcCCCCccccCC
Q 045431 150 --VTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFFCSPNNPTGAAA 222 (433)
Q Consensus 150 --d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~~p~nPtG~~~ 222 (433)
..++.+...+..+....+.++ ..+..+++++ +.+..|+.+ .+++.+++-+-|+.|+|.
T Consensus 169 ~~p~iv~~~~v~~a~eK~a~yf~------------v~l~~V~~~~-~~~~~D~~k~~~~i~eNti~lv~~~~~~p~G~-- 233 (491)
T KOG1383|consen 169 DKPNIVTPQNVHAAFEKAARYFE------------VELREVPLDE-GDYRVDPGKVVRMIDENTIMLVGSLPNFPTGE-- 233 (491)
T ss_pred CCccccchHHHHHHHHHHHhhEE------------EEEEeeeccc-cceEecHHHHHHHhccceEEEEEEcCCCCccc--
Confidence 456667667666666666666 4788888875 466666543 368888888899999998
Q ss_pred CHHHHHHHHHHHHH-cCCEEEEeccccccccC-CC-CCcccccCCCCcceEEEecccc-cccccccceeeeecccccccc
Q 045431 223 TREQLTRLVQFAKD-NGSIIVYDSAYALYISD-DN-PRSIFEIPGAKEVAIETSSFSK-YAGFTGVRLGWTVIPKELLFS 298 (433)
Q Consensus 223 ~~~~~~~i~~~a~~-~~~~li~De~~~~~~~~-~~-~~~~~~~~~~~~~vi~i~S~sK-~~~~~G~r~G~l~~~~~~~~~ 298 (433)
.+.+++|.++..+ +++++.+|.+-+.|... +. +..-+.+. .+...-.-.+.+| .+.++| +||++=+..-+..
T Consensus 234 -~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~fdFr-~p~V~Sisa~~HKYGl~~~G--~~~vl~r~k~~~~ 309 (491)
T KOG1383|consen 234 -IEDVEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEEFDFR-VPGVTSISADGHKYGLAPAG--SSWVLYRNKELLP 309 (491)
T ss_pred -hhhHHHHHHHHHHHhCCceeecccCccccccccccCccccccC-CCCceeEeeccceeeeeecC--cEEEEEccccccc
Confidence 5678999999988 99999999999987653 21 11111221 1111111123456 333445 7887755444311
Q ss_pred CCcchhHHHH-HHHhhcc-----CCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCCccE
Q 045431 299 DGFPVAKDFN-RIVCTCF-----NGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAPY 371 (433)
Q Consensus 299 ~~~~~~~~~~-~~~~~~~-----~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~ 371 (433)
+-..+..+|. ....+.+ .+.....|. +.+...+++...+..+.+-+....+++.+++. ++.+.....--+
T Consensus 310 ~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~w---a~~~~lG~eGY~~~~~~ive~~~~l~egie~i~~i~i~gkp~vs~ 386 (491)
T KOG1383|consen 310 HQLFFHTDWLGGIYASPTLNGSRPGSQVAAQW---AALMSLGEEGYRENTQNIVETARKLREGIENIKGIKIVGKPLVSF 386 (491)
T ss_pred ceEEEeccccCccccCcccccCCcccHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHHhhhccccceecCCCcEEE
Confidence 1111111111 1111111 112222222 22223445555777777888999999999987 777766533333
Q ss_pred EEEECCCCChHHHHHHHHHcCCeEecC
Q 045431 372 VWVQFPGRSSWDVFSEILEKTHVVTTP 398 (433)
Q Consensus 372 ~~~~~~~~~~~~~~~~l~~~~gi~v~~ 398 (433)
+...-...+..++-. ++.+.|..+..
T Consensus 387 ~~~~s~~~~i~elsd-~l~~~GW~lna 412 (491)
T KOG1383|consen 387 ILFGSNDVNIFELSD-LLRKKGWILNA 412 (491)
T ss_pred EEccCCccchhhhhH-HHHhcCcCccc
Confidence 333333334444444 45566888854
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00012 Score=73.64 Aligned_cols=269 Identities=13% Similarity=0.027 Sum_probs=146.2
Q ss_pred ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHH-HHHH---HHhc------
Q 045431 77 IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCD-ISRL---QIVF------ 146 (433)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~a-l~~l---~~l~------ 146 (433)
.++.++..+...+.+ .....|...++...+.+.+.+|+.+.+|.+...=.+|+|++.+ +..+ +...
T Consensus 95 ~~paila~~~a~~~N----~n~~~~e~SP~~t~lE~~vi~~la~l~G~~~~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~ 170 (608)
T TIGR03811 95 LMPAILAYNYAMLWN----GNNVAYESSPATSQMEEEVGKEFATLMGYKNGWGHIVADGSLANLEGLWYARNIKSLPFAM 170 (608)
T ss_pred CHHHHHHHHHHHHhC----CCCCccccCchHHHHHHHHHHHHHHHhCCCCCCeEEeCChHHHHHHHHHHHHHhhhccchh
Confidence 445555444443332 3334555667889999999999998666654333466676666 4433 2211
Q ss_pred CC-------------------------------------------C------CEEEEeCCCChhhhhhHHHhCCcccccc
Q 045431 147 GS-------------------------------------------N------VTMAVQDPSYPAYVDSSVIMGQTGEFQK 177 (433)
Q Consensus 147 ~~-------------------------------------------g------d~Vl~~~p~~~~~~~~~~~~g~~~~~~~ 177 (433)
+. | .+|++++-.|.+...++..+|.-.
T Consensus 171 ~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~---- 246 (608)
T TIGR03811 171 KEVKPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIGL---- 246 (608)
T ss_pred hhccccccccccchhhcccccccccccccccccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHcCCCc----
Confidence 00 0 157778888999888888888421
Q ss_pred cccccceEEEeecCccCCcccC-CCC-------CC-CccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCC--EEEEecc
Q 045431 178 DAEKYGKIEYMRCTAENGFFPD-LST-------VA-RTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGS--IIVYDSA 246 (433)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~-~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~--~li~De~ 246 (433)
-.++.+|++.+...+.+ +++ .. .+-+|+-+-....+|.+=+.+++.+|++.++++|+ ++.+|.+
T Consensus 247 -----~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAA 321 (608)
T TIGR03811 247 -----DQVIPVPVDSNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAA 321 (608)
T ss_pred -----ccEEEeecCCCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeecc
Confidence 25888998765444333 211 11 23345555668889997775555555555578998 6999999
Q ss_pred ccccc---cCC-C--CCccc-------------------------ccCCCCcceEEEecccccccccccceeeeeccccc
Q 045431 247 YALYI---SDD-N--PRSIF-------------------------EIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKEL 295 (433)
Q Consensus 247 ~~~~~---~~~-~--~~~~~-------------------------~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~ 295 (433)
|+++. +-+ . +.++. .+.+...-.-+.-.++|++. ....+|.++.++..
T Consensus 322 yGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~-~Py~~G~ll~Rd~~ 400 (608)
T TIGR03811 322 YGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGY-IPYSAGGIVIQDIR 400 (608)
T ss_pred ccchhhhhhccccccccccchhhcccccccccccccccccHhHHHHHhcCcCceEEEeCcccccc-cCCCeEEEEEeCHH
Confidence 99753 111 0 01100 11111111122347899985 77778988887654
Q ss_pred cccCCcchhHHHHHHHh-------hccCCCcHHH--HHHHHHhcCcC--ChhHHHHHHHHHHHHHHHHHHHHhhc
Q 045431 296 LFSDGFPVAKDFNRIVC-------TCFNGASNIS--QAGGLACLSPE--GFKAVHEVIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 296 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~--q~~~~~~l~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~ 359 (433)
+.+.......-+..... ......+.+. ..++...++.. +.+.+.++..+.-+.++++.+.|++.
T Consensus 401 ~~~~~~~~a~Yl~~~~~~~p~~~g~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~ 475 (608)
T TIGR03811 401 MRDVISYFATYVFEKGADIPALLGAYILEGSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNL 475 (608)
T ss_pred HHHHHhcCcchhccccccCcccccccceecCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 31100000000000000 0011122222 11122222222 34566788888888888888888774
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.5e-05 Score=71.83 Aligned_cols=279 Identities=13% Similarity=0.036 Sum_probs=137.3
Q ss_pred CCcEEEcCChHHH-HHHHHHhc---CCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcc-cCC
Q 045431 126 EGDIFVSDGAKCD-ISRLQIVF---GSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFF-PDL 200 (433)
Q Consensus 126 ~~~i~~~~G~~~a-l~~l~~l~---~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 200 (433)
....++++.+|.. +.+.+..+ ..++.|+.+.-.+..-.-+...+| .+++.++...+++.. .++
T Consensus 74 ~~~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~kai~~AG------------l~~~vV~~~~~~d~l~td~ 141 (389)
T PF05889_consen 74 VKSCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCFKAIERAG------------LEPVVVENVLEGDELITDL 141 (389)
T ss_dssp HCEEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHHHHHHHTT-------------EEEEE-EEEETTEEEEHH
T ss_pred ccceEEEecccccHHHHHHHHHhcccCCceEEEeeccccchHHHHHhcC------------CeEEEeeccCCCCeeeccH
Confidence 4567888887765 33432222 467899999888877677777788 456666543332221 111
Q ss_pred C-------C-CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcc---cccCCCCcce
Q 045431 201 S-------T-VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSI---FEIPGAKEVA 269 (433)
Q Consensus 201 ~-------~-~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~---~~~~~~~~~v 269 (433)
+ + .++..+.++++++.--+.. .+++++|+++|++||++.|+..+|+- .....-..+ ..... -.
T Consensus 142 ~~ie~~i~~~G~~~iLcvltttscfapr~--~D~i~~IakiC~~~~IPhlvNnAYgv-Q~~~~~~~i~~a~~~GR---vd 215 (389)
T PF05889_consen 142 EAIEAKIEELGADNILCVLTTTSCFAPRL--PDDIEEIAKICKEYDIPHLVNNAYGV-QSSKCMHLIQQAWRVGR---VD 215 (389)
T ss_dssp HHHHHHHHHHCGGGEEEEEEESSTTTTB------HHHHHHHHHHHT--EEEEGTTTT-T-HHHHHHHHHHHHHST---CS
T ss_pred HHHHHHHHHhCCCCeEEEEEecCccCCCC--CccHHHHHHHHHHcCCceEEccchhh-hHHHHHHHHHHHHhcCC---cc
Confidence 1 1 1344556666554333333 34699999999999999999999993 100000000 01111 12
Q ss_pred EEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHH
Q 045431 270 IETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENT 349 (433)
Q Consensus 270 i~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 349 (433)
+++.|..|.| +-+..-+.+.++.+.. ...+...........+.+.. ...++. -+...+........+..
T Consensus 216 a~vqS~dkNF-~VPvGgai~As~~~~~-------i~~vs~~YpGRas~sp~ld~--~itLl~-LG~~g~~~ll~~r~~~f 284 (389)
T PF05889_consen 216 AFVQSTDKNF-MVPVGGAIMASFDPSG-------ILAVSKEYPGRASASPSLDL--FITLLS-LGCTGYGALLKERKASF 284 (389)
T ss_dssp EEEEEHHHHH-CEESSHEEEEESSHHH-------HHHHHHTSHSHBTSHHHHHH--HHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred eeeeecCCCE-EecCCCcEEEecCHHH-------HHHHHHHhhhhhhcccchHH--HHHHHH-HhhhHHHHHHHHHHHHH
Confidence 7788888988 5654444555554432 23444333332232333333 333332 12222333334444444
Q ss_pred HHHHHHHhh----cCCeeec-CCCccEEEEECCCC-----ChHHHHHHHHHcCCeE----ecCCCCCC-----CCCCCeE
Q 045431 350 DIIVETFNS----LGFKVYG-GKNAPYVWVQFPGR-----SSWDVFSEILEKTHVV----TTPGSGFG-----PGGEGFI 410 (433)
Q Consensus 350 ~~l~~~l~~----~g~~~~~-~~~g~~~~~~~~~~-----~~~~~~~~l~~~~gi~----v~~g~~f~-----~~~~~~i 410 (433)
.++.+.|++ .+-.+.. |..-..+.+.++.. ....++-..|...||. +.|+..+. .....++
T Consensus 285 ~~l~erl~~~aee~~e~ll~~p~N~is~a~tl~~l~~~~~k~~~~lgs~Lf~R~VsG~RvV~~~~~~~tsh~~~yp~~Yl 364 (389)
T PF05889_consen 285 PYLKERLKKWAEEVGERLLETPRNHISMAFTLDTLYEISQKDGTFLGSMLFKRGVSGIRVVTPGGKKQTSHSSNYPCPYL 364 (389)
T ss_dssp HHHHHHHHHHHHHTTEEBSSSTT-SSEEEEE-TTCCTCCSSHHHHHHHHHHHTTEESSEEEETSSCEEETTSS--SSSEE
T ss_pred HHHHHHHHHHHHHhhhhhcCCCCCCeeEEEECccchhhccchhhhHHHHHHhCCcccceeeccCCCcccccCCCCchHHH
Confidence 444444433 3433322 33444455666522 1223444444444653 33333221 1123678
Q ss_pred EEe--eccChhHHHHHHHHHHHhhC
Q 045431 411 RVS--AFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 411 Ri~--~~~~~~~l~~~l~~l~~~l~ 433 (433)
-++ +..+.+|++..+++|+++++
T Consensus 365 t~AsaiG~~~eevd~~v~rL~k~i~ 389 (389)
T PF05889_consen 365 TAASAIGMTREEVDYFVKRLDKIIK 389 (389)
T ss_dssp EEEE-TT--HHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 784 45699999999999999874
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.5e-07 Score=82.10 Aligned_cols=253 Identities=16% Similarity=0.168 Sum_probs=49.2
Q ss_pred CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHH-HHHHHhccCCCCCCcEEEcCChHHHHHHHHHhcCCCCEEEE
Q 045431 76 PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAA-IASTFYKDLGIEEGDIFVSDGAKCDISRLQIVFGSNVTMAV 154 (433)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~-la~~l~~~~~~~~~~i~~~~G~~~al~~l~~l~~~gd~Vl~ 154 (433)
+.++.+++++.+....+.+. .|.-..|...-|.. +.+.+++-. ..+.-+++++..+|+.++...+.+|.+|++
T Consensus 17 ~l~~~a~~a~~~~a~~Y~nL----E~dl~~G~Rg~R~~~v~~ll~~lt--gAeaA~VvNnnaAAv~L~l~~la~~~EvIv 90 (367)
T PF03841_consen 17 PLSEEAIEAVAEVASGYSNL----EYDLETGKRGSRYAHVEELLCELT--GAEAALVVNNNAAAVLLALNTLAKGKEVIV 90 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccc----cccccccccccccccccccccccc--cccccccccccccccccccccccccccccc
Confidence 46788888888877655432 33222222222221 122222112 345677888888888775444445666766
Q ss_pred eCCC---Chh---hhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC--CCCccEEEEcCCCCcc--ccCCCH
Q 045431 155 QDPS---YPA---YVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST--VARTDIIFFCSPNNPT--GAAATR 224 (433)
Q Consensus 155 ~~p~---~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~p~nPt--G~~~~~ 224 (433)
..-. +.+ +.++.+..|. .++.+.... .....|++. .+++.+++..+++|-. |..-+
T Consensus 91 sRGelVeiGgsFRip~vm~~sGa------------~lvEVGttN-~t~~~Dye~AI~e~Ta~ll~Vh~Sn~~i~GFt~~- 156 (367)
T PF03841_consen 91 SRGELVEIGGSFRIPDVMRQSGA------------RLVEVGTTN-RTHLSDYEKAITENTAALLKVHTSNFRIQGFTGE- 156 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccc------------ccccccccc-cccccccccccccccccccccccccccccccccc-
Confidence 4322 222 3345555552 444444422 122334443 4788888878887753 33222
Q ss_pred HHHHHHHHHHHHcCCEEEEecccccccc---CC--CCCcccccCCCCcceEEEecccccccccccceeeeeccccccccC
Q 045431 225 EQLTRLVQFAKDNGSIIVYDSAYALYIS---DD--NPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSD 299 (433)
Q Consensus 225 ~~~~~i~~~a~~~~~~li~De~~~~~~~---~~--~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~ 299 (433)
-.++++++++++|++++|+|-.-+.+.. -+ .-+.+..+-. .+-.+++.|-.|.+| |...|.+++.++++
T Consensus 157 ~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~-~GaDlV~fSGdKlLG--GPQaGiI~Gkk~lI--- 230 (367)
T PF03841_consen 157 VSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLA-AGADLVTFSGDKLLG--GPQAGIIVGKKELI--- 230 (367)
T ss_dssp ----HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCC-CT-SEEEEETTSSSS--S-S-EEEEEEHHHH---
T ss_pred ccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhh-cCCCEEEEECCCcCC--CCCeEEEEeCHHHH---
Confidence 2489999999999999999987643221 01 1122333211 223488889999985 66789999999997
Q ss_pred CcchhHHHHHHHhhccCCCcHHHHHHHHHhcC---cCCh--------hHHHHHHHHHHHHHHHHHHHHhhc
Q 045431 300 GFPVAKDFNRIVCTCFNGASNISQAGGLACLS---PEGF--------KAVHEVIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~~~--------~~~~~~~~~~~~~~~~l~~~l~~~ 359 (433)
+.+++..-...........++..+.|+ +... +.+....+.++++.+.+.+.|+..
T Consensus 231 -----~~lk~~pl~RalrvdK~tla~L~atL~~Y~~~~~~~~~ip~l~ml~~~~~~L~~rA~~l~~~l~~~ 296 (367)
T PF03841_consen 231 -----EKLKKHPLGRALRVDKLTLAALEATLRLYLDPDKAKEEIPTLRMLTQSLEELRARAERLAAQLKAA 296 (367)
T ss_dssp -----HHHHHHHHTTT-B--HHHHHHHHHHHHH--------------------------------------
T ss_pred -----HHHhhCCCcceEeeCHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccc
Confidence 555544433334445555444443333 2111 224444556666777777766654
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00017 Score=65.31 Aligned_cols=200 Identities=13% Similarity=0.108 Sum_probs=115.3
Q ss_pred ccEEEEcCC-CCccc-cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCcccccCCCCcceEEEecccccccc
Q 045431 206 TDIIFFCSP-NNPTG-AAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN--PRSIFEIPGAKEVAIETSSFSKYAGF 281 (433)
Q Consensus 206 ~~~i~l~~p-~nPtG-~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~vi~i~S~sK~~~~ 281 (433)
+-+-++..| +.--| .--|++..++|.+++++|++.+|+||++.+....|. ......++..+| ++ +|||-+ .
T Consensus 271 pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~PpD-~v---TFSKK~-q 345 (484)
T KOG1405|consen 271 PVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSPPD-VV---TFSKKF-Q 345 (484)
T ss_pred CeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCCcc-ce---ehhhhh-h
Confidence 444555677 54444 455899999999999999999999999987555554 122334443333 34 899988 4
Q ss_pred cccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcC-
Q 045431 282 TGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLG- 360 (433)
Q Consensus 282 ~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g- 360 (433)
.| ||-. .++++- -+.++.+ .++...+.-...+.+.++.... +.+....+.--+.+...|.++.
T Consensus 346 ~g---Gffh-~~~frp------n~pYrif---NTWmGdP~k~lll~~vv~~I~~---~~Ll~n~~~vG~~l~~gL~~Lq~ 409 (484)
T KOG1405|consen 346 TG---GFFH-DEEFRP------NEPYRIF---NTWMGDPSKNLLLEEVVQEIKR---EDLLNNVAHVGKALLKGLLELQA 409 (484)
T ss_pred cC---cccc-CcccCC------CchHHHh---hhhcCChHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 6543 333320 1222221 1221122211112222221111 3444445555566666665541
Q ss_pred -----CeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe--eccChhHHHHHHHHHHHhhC
Q 045431 361 -----FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS--AFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 361 -----~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l~ 433 (433)
+.-... .|.|+.+++|.....+.+...++-+||.+-. | +...||+- +.-.+...+-.++++.+++.
T Consensus 410 ~~p~~~~~~RG-rGTF~a~d~ps~~~Rdk~i~~~~~nGv~~GG---C---g~~siRfRPsLvf~~~Ha~i~l~~~~k~l~ 482 (484)
T KOG1405|consen 410 KYPGKINNLRG-RGTFIAWDCPSGSIRDKLILIARLNGVNLGG---C---GDKSIRFRPSLVFRKHHADIFLDIFDKILA 482 (484)
T ss_pred hCchhhhcccc-cceEEEEeCCChHHHHHHHHHHHHcCceecc---c---ccceeeeccceeehhhhHHHHHHHHHHHhc
Confidence 222333 6788889998655556666666777988732 2 24457776 44477788888888887763
|
|
| >PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.8e-07 Score=62.79 Aligned_cols=37 Identities=16% Similarity=0.006 Sum_probs=29.8
Q ss_pred ccccccccccccccccCCChhhHHHHHhccccccccc
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLG 38 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~ 38 (433)
++++++|.+|.+++|++|||+++||+.++||++|+..
T Consensus 7 ~~l~~~I~~g~~~~g~~lps~~~la~~~~vsr~tvr~ 43 (64)
T PF00392_consen 7 DQLRQAILSGRLPPGDRLPSERELAERYGVSRTTVRE 43 (64)
T ss_dssp HHHHHHHHTTSS-TTSBE--HHHHHHHHTS-HHHHHH
T ss_pred HHHHHHHHcCCCCCCCEeCCHHHHHHHhccCCcHHHH
Confidence 4678999999999999999999999999999999643
|
The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A .... |
| >COG2186 FadR Transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.1e-06 Score=76.78 Aligned_cols=47 Identities=19% Similarity=0.101 Sum_probs=38.2
Q ss_pred ccccccccccccccccCCChhhHHHHHhccccccc---cccCC-CCCCcHH
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGN---LGKLQ-AGYLFPE 48 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~---~~~l~-~g~~~~~ 48 (433)
++|.+.|.+|.++||++||++|+||+++||||+++ +..|. .|++...
T Consensus 17 ~~i~~~I~~g~~~~G~~LP~EreLae~fgVSR~~vREAl~~L~a~Glve~r 67 (241)
T COG2186 17 EQIGALIVSGELPPGDRLPSERELAERFGVSRTVVREALKRLEAKGLVEIR 67 (241)
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHCCCcHHHHHHHHHHHHCCCeeec
Confidence 46889999999999999999999999999999995 33333 3665554
|
|
| >COG2188 PhnF Transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=97.90 E-value=1e-06 Score=78.65 Aligned_cols=47 Identities=17% Similarity=0.111 Sum_probs=39.0
Q ss_pred ccccccccccccccccCCChhhHHHHHhccccccccccC---C-CCCCcHH
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLGKL---Q-AGYLFPE 48 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~~l---~-~g~~~~~ 48 (433)
++|+++|.+|.+++|++|||+++||++++|||-|+-+++ . +|++...
T Consensus 14 ~~i~~~I~~G~~~~G~~LPsE~eLa~~f~VSR~TvRkAL~~L~~eGli~r~ 64 (236)
T COG2188 14 EDIRQRIESGELPPGDKLPSERELAEQFGVSRMTVRKALDELVEEGLIVRR 64 (236)
T ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHCCcHHHHHHHHHHHHHCCcEEEE
Confidence 578999999999999999999999999999999964433 2 3665543
|
|
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0019 Score=57.68 Aligned_cols=336 Identities=14% Similarity=0.145 Sum_probs=178.1
Q ss_pred CCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCC-------CCCCHHHHHHHHHHHhccCCCCCCcEEEcC
Q 045431 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA-------EQGEKPLRAAIASTFYKDLGIEEGDIFVSD 133 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~-------~~g~~~lr~~la~~l~~~~~~~~~~i~~~~ 133 (433)
++.+.|-|..+... ..|..+...+.+.+.++. ...-|++ ..+....-.-++.. .|+..++|.+.+
T Consensus 64 ~d~~~iYlcGNSLG-LmPK~t~~~~~~eLDkWa---k~av~gH~~GkvPW~~~De~il~l~~~i----VGA~e~EvavmN 135 (465)
T KOG3846|consen 64 DDKPVIYLCGNSLG-LMPKSTRNSINAELDKWA---KCAVEGHFKGKVPWVSIDEPILPLLAPI----VGAQENEVAVMN 135 (465)
T ss_pred CCCCeEEEeccccc-cCchhhHhHHHHHHHHHH---hhhhhcccccccceeecchhhhhhhhhh----ccCCchhhhhHh
Confidence 34456777665543 367777777777665542 2222322 23344444444444 488889999999
Q ss_pred ChHHHHHH-HHHhcCCC---CEEEEeCCCChhhhhhH----HHhCCcccccccccccceEEEeecCccCCccc---C---
Q 045431 134 GAKCDISR-LQIVFGSN---VTMAVQDPSYPAYVDSS----VIMGQTGEFQKDAEKYGKIEYMRCTAENGFFP---D--- 199 (433)
Q Consensus 134 G~~~al~~-l~~l~~~g---d~Vl~~~p~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--- 199 (433)
+-+..+.. +.++.+|. -+|+++.-.|++-..++ +..|+... -..+.+... ++.-.. |
T Consensus 136 sLTvNlh~Ll~sFyKPTekR~KILlE~kaFPSDhYAiesQ~~lhG~~~e--------~sm~~iePR-EGEetlRteDILd 206 (465)
T KOG3846|consen 136 SLTVNLHSLLISFYKPTEKRFKILLEKKAFPSDHYAIESQCKLHGISPE--------NSMIQIEPR-EGEETLRTEDILD 206 (465)
T ss_pred hhhhHHHHHHHHhcCCcchhhhhhhccCCCCchHHHHHhhhhhcCCChH--------HheEEeccc-ccccchhHHHHHH
Confidence 99999886 57777776 46899988887754444 44443211 012222211 111111 1
Q ss_pred -CCCC-CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccc
Q 045431 200 -LSTV-ARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSK 277 (433)
Q Consensus 200 -~~~~-~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK 277 (433)
+++. ..+.+|+++-.|+-||+.++ +.+|-..-+..|+++=.|-+|+-. .-|..+-. ++..+-+.+--|
T Consensus 207 ~IEkngDeiA~v~fSGvqyYTGQ~Fd---i~aIT~Agq~kgc~VGfDLAHAvg---NVpL~LHd----WgVDFACWCSYK 276 (465)
T KOG3846|consen 207 TIEKNGDEIALVCFSGVQYYTGQYFD---IGAITFAGQFKGCLVGFDLAHAVG---NVPLQLHD----WGVDFACWCSYK 276 (465)
T ss_pred HHHhcCCeEEEEEeecceeecccccc---hhhhhhcccCCCcEechhhhhhhc---CCceEEee----cCCceEEEeeec
Confidence 2222 34566677778999999998 777776667789999999988832 11222211 333466777677
Q ss_pred ccccccc-ceeeeeccccccccCCcchhHHHH-----H------------HHhhccCCCcHHHHHHHHHhcCcCChhHHH
Q 045431 278 YAGFTGV-RLGWTVIPKELLFSDGFPVAKDFN-----R------------IVCTCFNGASNISQAGGLACLSPEGFKAVH 339 (433)
Q Consensus 278 ~~~~~G~-r~G~l~~~~~~~~~~~~~~~~~~~-----~------------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~ 339 (433)
.+. +|- .+|-+.+.........+++...|. + ......+.++.+.-.+....|+--....++
T Consensus 277 Yln-aGaGgIgGlFvHekh~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~~SLe~F~q~~~~ 355 (465)
T KOG3846|consen 277 YLN-AGAGGIGGLFVHEKHTKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVALRSSLELFAQFNIN 355 (465)
T ss_pred ccc-cCCCccceeeeehhhhcchhhHHhhhccCCcchhhhhccccccCccccccccCCCcHhHHHHHHhhHHHHHHhhHH
Confidence 664 432 355555554443222222222110 0 000111122222222222222211111133
Q ss_pred HHHHHHHHHHHHHHHHHhhc-C-----------CeeecC----CCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCC
Q 045431 340 EVIGFYKENTDIIVETFNSL-G-----------FKVYGG----KNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFG 403 (433)
Q Consensus 340 ~~~~~~~~~~~~l~~~l~~~-g-----------~~~~~~----~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~ 403 (433)
+++++---...++...++.. | +.+..| +.|..+.+.+.. +...++++|-++ |+.+-
T Consensus 356 ~lRkrS~lLTgYleyL~k~~~g~~~~~rt~Kl~~~IiTP~~~~erGcQLsl~Fss-p~~~vfqeL~kr-Gv~~D------ 427 (465)
T KOG3846|consen 356 ELRKRSLLLTGYLEYLLKASKGYKHPLRTEKLFFTIITPTSTDERGCQLSLYFSS-PTPKVFQELHKR-GVIGD------ 427 (465)
T ss_pred HHhhhhhhHHhHHHHHHHHhcccCchhhhcceeEEEeCCcccccccceEEEEeCC-CchHHHHHHHHc-Ceecc------
Confidence 33332222222222222221 2 223333 235556666653 235677777655 98773
Q ss_pred CCCCCeEEEe---eccChhHHHHHHHHHHHhh
Q 045431 404 PGGEGFIRVS---AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 404 ~~~~~~iRi~---~~~~~~~l~~~l~~l~~~l 432 (433)
...++.||++ ++++-.++..++..|.+++
T Consensus 428 kR~PNvIRvAPvpLYN~f~Dvy~f~n~L~e~~ 459 (465)
T KOG3846|consen 428 KRRPNVIRVAPVPLYNTFSDVYIFVNALNEAM 459 (465)
T ss_pred ccCCCceEeecchhhccHHHHHHHHHHHHHHH
Confidence 3457889999 5889999999998888765
|
|
| >PRK14999 histidine utilization repressor; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.1e-06 Score=79.00 Aligned_cols=49 Identities=16% Similarity=0.049 Sum_probs=40.0
Q ss_pred ccccccccccccccccCCChhhHHHHHhcccccccccc---C-CCCCCcHHHH
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLGK---L-QAGYLFPEIA 50 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~~---l-~~g~~~~~~~ 50 (433)
..|+++|.+|.++||++|||+|+||+++||||+|+-++ | .+|++....+
T Consensus 19 ~~i~~~I~~g~~~~G~~LPsE~eLa~~~gVSR~TVR~Al~~L~~eGli~r~~G 71 (241)
T PRK14999 19 QDICKKIAGGVWQPHDRIPSEAELVAQYGFSRMTINRALRELTDEGWLVRLQG 71 (241)
T ss_pred HHHHHHHHcCCCCCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecC
Confidence 35789999999999999999999999999999996443 3 2477765433
|
|
| >TIGR02325 C_P_lyase_phnF phosphonates metabolism transcriptional regulator PhnF | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.1e-06 Score=78.94 Aligned_cols=49 Identities=18% Similarity=0.062 Sum_probs=40.2
Q ss_pred ccccccccccccccccCCChhhHHHHHhcccccccccc---CC-CCCCcHHHH
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLGK---LQ-AGYLFPEIA 50 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~~---l~-~g~~~~~~~ 50 (433)
+.+++.|.+|.+++|++|||+|+||++++|||.|+-++ |. +|++....+
T Consensus 15 ~~l~~~I~~g~~~~G~~LPsE~eLa~~~~VSR~TvR~Al~~L~~eGli~r~~G 67 (238)
T TIGR02325 15 DKIEQEIAAGHLRAGDYLPAEMQLAERFGVNRHTVRRAIAALVERGLLRAEQG 67 (238)
T ss_pred HHHHHHHHcCCCCCCCcCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecC
Confidence 45789999999999999999999999999999996443 32 477776533
|
All members of the seed alignment for this family are predicted helix-turn-helix transcriptional regulatory proteins of the broader gntR and are found associated with genes for the import and degradation of phosphonates and/or related compounds (e.g. phosphonites) with a direct C-P bond. |
| >TIGR02404 trehalos_R_Bsub trehalose operon repressor, B | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.4e-06 Score=77.93 Aligned_cols=49 Identities=18% Similarity=0.084 Sum_probs=40.0
Q ss_pred ccccccccccccccccCCChhhHHHHHhccccccccc---cC-CCCCCcHHHH
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLG---KL-QAGYLFPEIA 50 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~---~l-~~g~~~~~~~ 50 (433)
..|++.|.+|.++||++|||+++||+++||||.|+-+ .| .+|++....+
T Consensus 7 ~~l~~~I~~g~~~~G~~LPsE~eLa~~~gVSR~TVR~Al~~L~~eGli~r~~G 59 (233)
T TIGR02404 7 QDLEQKITHGQYKEGDYLPSEHELMDQYGASRETVRKALNLLTEAGYIQKIQG 59 (233)
T ss_pred HHHHHHHHhCCCCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 3578899999999999999999999999999999644 33 2477766433
|
subtilis-type. This family consists of repressors of the GntR family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gram-positive lineages and does not include the TreR from E. coli. |
| >TIGR02018 his_ut_repres histidine utilization repressor, proteobacterial | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.6e-06 Score=77.39 Aligned_cols=49 Identities=18% Similarity=0.070 Sum_probs=40.0
Q ss_pred ccccccccccccccccCCChhhHHHHHhcccccccccc---C-CCCCCcHHHH
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLGK---L-QAGYLFPEIA 50 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~~---l-~~g~~~~~~~ 50 (433)
+.++++|.+|.++||++|||+++||++++|||.|+-++ | .+|++....+
T Consensus 8 ~~l~~~I~~g~~~~g~~LPsE~eLa~~~~VSR~TVR~Al~~L~~eGli~r~~G 60 (230)
T TIGR02018 8 QDILERIRSGEWPPGHRIPSEHELVAQYGCSRMTVNRALRELTDAGLLERRQG 60 (230)
T ss_pred HHHHHHHHhCCCCCCCcCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecC
Confidence 35788999999999999999999999999999996443 3 2477666433
|
This model represents a proteobacterial histidine utilization repressor. It is usually found clustered with the enzymes HutUHIG so that it can regulate its own expression as well. A number of species have several paralogs and may fine-tune the regulation according to levels of degradation intermediates such as urocanate. This family belongs to the larger GntR family of transcriptional regulators. |
| >PRK09764 DNA-binding transcriptional repressor MngR; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=2e-06 Score=77.24 Aligned_cols=49 Identities=20% Similarity=0.033 Sum_probs=40.0
Q ss_pred ccccccccccccccccCCChhhHHHHHhcccccccccc---C-CCCCCcHHHH
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLGK---L-QAGYLFPEIA 50 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~~---l-~~g~~~~~~~ 50 (433)
+.|+..|.+|.++||+||||+++||+++||||.|+-++ | .+|++....+
T Consensus 12 ~~L~~~I~~g~~~~G~~LPsE~eL~~~~~VSR~TvR~Al~~L~~eGli~r~~G 64 (240)
T PRK09764 12 DRIREQIARGELKPGDALPTESALQTEFGVSRVTVRQALRQLVEQQILESIQG 64 (240)
T ss_pred HHHHHHHHcCCCCCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecC
Confidence 45788999999999999999999999999999996443 3 2477665433
|
|
| >PRK11402 DNA-binding transcriptional regulator FrlR; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=2e-06 Score=77.29 Aligned_cols=47 Identities=19% Similarity=0.068 Sum_probs=39.3
Q ss_pred ccccccccccccccccCCChhhHHHHHhcccccccccc---C-CCCCCcHH
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLGK---L-QAGYLFPE 48 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~~---l-~~g~~~~~ 48 (433)
.+|++.|.+|.+++|+||||+++||++++|||.|+-++ | .+|++...
T Consensus 16 ~~i~~~I~~G~~~~g~kLPsE~eLa~~~~VSR~TvR~Al~~L~~eGli~r~ 66 (241)
T PRK11402 16 QRLLDDIAQGVYQAGQQIPTENELCTQYNVSRITIRKAISDLVADGVLIRW 66 (241)
T ss_pred HHHHHHHHcCCCCCCCcCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 36788999999999999999999999999999996443 3 24777754
|
|
| >PRK04984 fatty acid metabolism regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=6.4e-06 Score=74.02 Aligned_cols=47 Identities=15% Similarity=0.082 Sum_probs=38.4
Q ss_pred ccccccccccccccccCCChhhHHHHHhccccccccc---cCC-CCCCcHH
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLG---KLQ-AGYLFPE 48 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~---~l~-~g~~~~~ 48 (433)
++|++.|.+|.|+||++|||+|+||+++||||+|+-. .|. .|++...
T Consensus 14 ~~l~~~I~~g~l~pG~~LPsE~eLae~~gVSRt~VReAL~~L~~eGlv~~~ 64 (239)
T PRK04984 14 EYIIESIWNNRFPPGSILPAERELSELIGVTRTTLREVLQRLARDGWLTIQ 64 (239)
T ss_pred HHHHHHHHcCCCCCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 4688999999999999999999999999999999643 332 3555543
|
|
| >PRK09990 DNA-binding transcriptional regulator GlcC; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=1e-05 Score=73.26 Aligned_cols=47 Identities=17% Similarity=0.048 Sum_probs=38.3
Q ss_pred ccccccccccccccccCCChhhHHHHHhccccccccc---cCC-CCCCcHH
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLG---KLQ-AGYLFPE 48 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~---~l~-~g~~~~~ 48 (433)
++|+..|.+|+|+||++|||+++||+++||||+|+-. .|. .|++...
T Consensus 14 ~~i~~~I~~g~l~pG~~LPsE~eLa~~~gVSRtpVREAL~~L~~eGlV~~~ 64 (251)
T PRK09990 14 ERIERLIVDGVLKVGQALPSERRLCEKLGFSRSALREGLTVLRGRGIIETA 64 (251)
T ss_pred HHHHHHHHcCCCCCCCcCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 5689999999999999999999999999999999643 332 3555543
|
|
| >TIGR02812 fadR_gamma fatty acid metabolism transcriptional regulator FadR | Back alignment and domain information |
|---|
Probab=97.68 E-value=1e-05 Score=72.45 Aligned_cols=36 Identities=11% Similarity=-0.058 Sum_probs=33.7
Q ss_pred ccccccccccccccccCCChhhHHHHHhcccccccc
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNL 37 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~ 37 (433)
++++++|.+|.|+||++|||+++||++|||||+|+-
T Consensus 13 ~~l~~~I~~g~l~pG~~LpsE~~La~~lgVSRtpVR 48 (235)
T TIGR02812 13 EYIVESIWNNRFPPGSILPAERELSELIGVTRTTLR 48 (235)
T ss_pred HHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHH
Confidence 468999999999999999999999999999999963
|
Members of this family are FadR, a transcriptional regulator of fatty acid metabolism, including both biosynthesis and beta-oxidation. It is found exclusively in a subset of Gammaproteobacteria, with strictly one copy per genome. It has an N-terminal DNA-binding domain and a less well conserved C-terminal long chain acyl-CoA-binding domain. FadR from this family heterologously expressed in Escherichia coli show differences in regulatory response and fatty acid binding profiles. The family is nevertheless designated equivalog, as all member proteins have at least nominally the same function. |
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0067 Score=57.35 Aligned_cols=308 Identities=14% Similarity=0.136 Sum_probs=156.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhccCCCC----------CCcEEEcCChHHHHHH-HHH---h---cCCC-----------C
Q 045431 99 SGYGAEQGEKPLRAAIASTFYKDLGIE----------EGDIFVSDGAKCDISR-LQI---V---FGSN-----------V 150 (433)
Q Consensus 99 ~~Y~~~~g~~~lr~~la~~l~~~~~~~----------~~~i~~~~G~~~al~~-l~~---l---~~~g-----------d 150 (433)
+.+...+-..+|..-+.+||.+-++.+ .--|+.++.+.+.+-. +.+ . ++.+ +
T Consensus 103 FtW~ssPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~ 182 (511)
T KOG0628|consen 103 FTWASSPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLAR 182 (511)
T ss_pred ceeecCcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhh
Confidence 455566788999999999997633332 2345555554444433 211 1 2222 2
Q ss_pred EE-EEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CC----C---CCCccEEEEcCCCCccccC
Q 045431 151 TM-AVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LS----T---VARTDIIFFCSPNNPTGAA 221 (433)
Q Consensus 151 ~V-l~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~---~~~~~~i~l~~p~nPtG~~ 221 (433)
-| ...+..+.++...+...+ .++..++.+.+-+...+ +. + ..-+-.++..+- .-||.
T Consensus 183 lV~Y~SDqahssveka~~i~~------------VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v~at~-GTT~~- 248 (511)
T KOG0628|consen 183 LVAYCSDQAHSSVEKACLIAG------------VKLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFVCATL-GTTSS- 248 (511)
T ss_pred heEEecCcccchHHHhHhhcc------------eeEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEEEEee-cCccc-
Confidence 33 346667777777666666 46777777653333222 11 1 122333232222 22333
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEeccccccccC-CCCCccc-ccCCCCcceEEEecccccccccccceeeeeccccccccC
Q 045431 222 ATREQLTRLVQFAKDNGSIIVYDSAYALYISD-DNPRSIF-EIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSD 299 (433)
Q Consensus 222 ~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~-~~~~~~~-~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~ 299 (433)
.+.+++.+|..+|+++|+++.+|.+|++..+- +....+. .++.. | -+-.-.||++ +.-+-+.-+...+..-...
T Consensus 249 ca~D~l~elg~Vc~~~glWLHVDAAYAGsa~iCpE~r~l~rGie~a-D--Sfn~n~hK~~-~vnfDCs~lWvkd~~~~~~ 324 (511)
T KOG0628|consen 249 CAFDELEELGPVCREEGLWLHVDAAYAGSAFICPEFRYLMRGIEYA-D--SFNFNPHKWL-LVNFDCSPLWVKDGTKLSR 324 (511)
T ss_pred cccccHHHhcchhhhcCEEEEeehhhccccccCHHHHHHhhcchhh-c--cccCChhhee-EEeeeeecceeecCceeee
Confidence 35678999999999999999999999964332 1111111 11100 1 1122347766 4666666555555421000
Q ss_pred CcchhHHHHHHHhh------ccCCCcHHHHH-HHHH---hcCcCChhHHHHHHHHHHH---HHHHHHHHHhhc-CCeeec
Q 045431 300 GFPVAKDFNRIVCT------CFNGASNISQA-GGLA---CLSPEGFKAVHEVIGFYKE---NTDIIVETFNSL-GFKVYG 365 (433)
Q Consensus 300 ~~~~~~~~~~~~~~------~~~~~~~~~q~-~~~~---~l~~~~~~~~~~~~~~~~~---~~~~l~~~l~~~-g~~~~~ 365 (433)
...+.....+.... ..+..+ ++.. -++. .++.- ..+.+++++++ ..+.+.+.+.+- -+++..
T Consensus 325 ~~~vdp~yL~h~~~~~~~Dyrhwqip-l~rRfRSLKlWfv~R~~---Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~ 400 (511)
T KOG0628|consen 325 AFNVDPLYLKHAYQGSAPDYRHWQIP-LGRRFRSLKLWFVLRSY---GVENLQNYIREHVRLAKEFETLVRADPRFEIVN 400 (511)
T ss_pred eeecChHhhcchhhccCCCccccccc-cccchhhHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHhhcCCcceeec
Confidence 00000000000000 000000 0000 0010 11111 12333333333 233333333332 467665
Q ss_pred CCCccEEEEECCC--CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc---ChhHHHHHHHHHHHh
Q 045431 366 GKNAPYVWVQFPG--RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG---HRGNVLEACKRFKHL 431 (433)
Q Consensus 366 ~~~g~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~---~~~~l~~~l~~l~~~ 431 (433)
+.-=-.+++++.+ .....+.+++-....|.+.|... .+.-.+|++++. ++++++++.+.|.+.
T Consensus 401 ~~~lgLvcFRlk~~N~~ne~Ll~~in~~g~i~l~~~~l---~gk~vlRf~V~s~~t~~~di~~a~~~I~~~ 468 (511)
T KOG0628|consen 401 KRILGLVCFRLKGDNEINEALLNRLNSSGRIHLVPASL---HGKFVLRFAVCSPLTNESDIDEAWKIIFEA 468 (511)
T ss_pred ccccceeEEeecCCcHHHHHHHHHHHhcCcEEEEEeee---cceEEEEEEecCCCCcHHHHHHHHHHHHHH
Confidence 5443356677763 34567888887778899988653 345679999643 688999998888765
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.009 Score=58.78 Aligned_cols=319 Identities=16% Similarity=0.175 Sum_probs=165.4
Q ss_pred ecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCC--CCHHHHHHHHHHH---hccCCCCCCcEEEcCChHHHHH-H
Q 045431 68 LGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQ--GEKPLRAAIASTF---YKDLGIEEGDIFVSDGAKCDIS-R 141 (433)
Q Consensus 68 l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~--g~~~lr~~la~~l---~~~~~~~~~~i~~~~G~~~al~-~ 141 (433)
.++|.+....|+.+.+-+.+ +..++.+|+|-+ -...-.+++-+|- ....|.+..|--+..-++++-. +
T Consensus 123 IGmGYyn~~vP~~I~RNile------np~W~TqYTPYQ~EIsQGRLEsllNyQTmi~dlTGL~~aNASLLDEgTAaaEAm 196 (1001)
T KOG2040|consen 123 IGMGYYNTHVPAVILRNILE------NPGWYTQYTPYQAEISQGRLESLLNYQTMITDLTGLPMANASLLDEGTAAAEAM 196 (1001)
T ss_pred hccccccccCcHHHHHHhhh------CCcceeccCCCchhhhhhhHHHHhhhHHhhhhccCCcccchhhhccchhHHHHH
Confidence 36677766778877666555 236677776622 1111122333331 2223455444443333343333 3
Q ss_pred -HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCcccc
Q 045431 142 -LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGA 220 (433)
Q Consensus 142 -l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~ 220 (433)
+..-..++.+.++...+|+.....++.... + ..+...-.+.. ..+ ....++..+++..|.. -|.
T Consensus 197 ~l~~~~~krkk~vvd~~~hpqtlsV~~TRa~-~---------~~i~v~~~~~~---~~~-~s~~~v~gvlvQYP~t-~G~ 261 (1001)
T KOG2040|consen 197 ALCNRINKRKKFVVDSNCHPQTLSVVKTRAK-G---------FGIKVVVSDIK---EAD-YSSKDVSGVLVQYPDT-EGS 261 (1001)
T ss_pred HHHHhhcccceEEecCCCCcchhhhhhcccc-c---------cceeEEecCHH---Hhh-ccccceeEEEEEcCCC-CCc
Confidence 233345666799999999988776653321 0 11211111111 001 1124566777666643 577
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEe-ccccccccCCCCCcccccCCCCcceEEEecccccccc----cccceeeeeccccc
Q 045431 221 AATREQLTRLVQFAKDNGSIIVYD-SAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGF----TGVRLGWTVIPKEL 295 (433)
Q Consensus 221 ~~~~~~~~~i~~~a~~~~~~li~D-e~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~----~G~r~G~l~~~~~~ 295 (433)
+.+ ..++++.+++.+.+++.- |--+ ++ +...++..+-.|.+||. ..||. .|--.||..+.+.+
T Consensus 262 i~d---~~el~~~a~~~~s~vv~atDLLa-Lt-------iLrpPgefGaDIavGSs-QRFGVPlGYGGPHAaFfAv~~~l 329 (1001)
T KOG2040|consen 262 VLD---FDELVELAHANGSLVVMATDLLA-LT-------ILRPPGEFGADIAVGSS-QRFGVPLGYGGPHAAFFAVSESL 329 (1001)
T ss_pred ccC---HHHHHHHhhccCceEEEeehhhH-HH-------ccCChhhcCceeeeccc-cccCccccCCCchHHHHHHHHHH
Confidence 777 667777788888876642 2122 11 11111222334778873 33443 34445566666555
Q ss_pred ccc----------C---Cc-------chhHHHHHHHhhccCCCcHHHH--HHHHHhcCcCChhHHHHHHHHHHHHHHHHH
Q 045431 296 LFS----------D---GF-------PVAKDFNRIVCTCFNGASNISQ--AGGLACLSPEGFKAVHEVIGFYKENTDIIV 353 (433)
Q Consensus 296 ~~~----------~---~~-------~~~~~~~~~~~~~~~~~~~~~q--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 353 (433)
... + .. .-.+.+++-+..+..++..... .++..++- .+-..++++.+++......+.
T Consensus 330 ~R~mPGRiiGvtkD~~gk~a~RLALQTREQHIrRDKATSNICTAQALLANmaAmyaiY-HGp~gL~~IArrvh~~T~~l~ 408 (1001)
T KOG2040|consen 330 VRMMPGRIIGVTKDALGKEAYRLALQTREQHIRRDKATSNICTAQALLANMAAMYAIY-HGPHGLKEIARRVHNLTLILA 408 (1001)
T ss_pred HhhCCCceEeeeecccccHHHHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhh-cCcHHHHHHHHHHHHHHHHHH
Confidence 321 0 00 0011223323322222211111 11111111 222567888888888899999
Q ss_pred HHHhhcCCeeecCCCccEEEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHH
Q 045431 354 ETFNSLGFKVYGGKNAPYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFK 429 (433)
Q Consensus 354 ~~l~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~ 429 (433)
..|++.|-++.. ..+|-.+.+. +...++++.+.+++ +|-++-- .++.+-+++ ..+++|++.++..+.
T Consensus 409 ~~l~~aghel~~--k~fFDTLkI~~~~s~~~~l~rA~~~-~iNlr~~------ed~tigvslDETv~~~DvddLl~vf~ 478 (1001)
T KOG2040|consen 409 EGLKNAGHELQH--KPFFDTLKIRCGCSAEEVLDRAAKR-QINLRLV------EDGTIGVSLDETVTEKDVDDLLWVFN 478 (1001)
T ss_pred HHHhhcchhhcc--ccccceEEEEecCcHHHHHHHHHhh-cCceEEe------ecCceEEeecccccHHHHHHHHHHHc
Confidence 999988866654 3366555554 33567777777766 6665432 356777887 447889998887764
|
|
| >PRK11523 DNA-binding transcriptional repressor ExuR; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=1.4e-05 Score=72.37 Aligned_cols=48 Identities=21% Similarity=0.049 Sum_probs=39.1
Q ss_pred ccccccccccccccccCCChhhHHHHHhcccccccc---ccCC-CCCCcHHH
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNL---GKLQ-AGYLFPEI 49 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~---~~l~-~g~~~~~~ 49 (433)
++++++|.+|+|+||++||++++||+++||||+|+- ..|. .|++....
T Consensus 15 ~~l~~~I~~g~l~pG~~LpsE~eLae~~gVSRtpVREAL~~L~~eGlV~~~~ 66 (253)
T PRK11523 15 AELKERIEQGVYLVGDKLPAERFIADEKNVSRTVVREAIIMLEVEGYVEVRK 66 (253)
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 468999999999999999999999999999999963 3332 36665443
|
|
| >PRK09464 pdhR transcriptional regulator PdhR; Reviewed | Back alignment and domain information |
|---|
Probab=97.62 E-value=1.5e-05 Score=72.36 Aligned_cols=47 Identities=21% Similarity=0.171 Sum_probs=38.5
Q ss_pred ccccccccccccccccCCChhhHHHHHhccccccccc---cCC-CCCCcHH
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLG---KLQ-AGYLFPE 48 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~---~l~-~g~~~~~ 48 (433)
+++++.|.+|.|+||++|||+++||+++||||+|+-. .|. .|++...
T Consensus 17 ~~l~~~I~~g~l~pG~~LpsE~eLa~~lgVSRtpVREAL~~L~~eGlv~~~ 67 (254)
T PRK09464 17 QQLEFLILEGTLRPGEKLPPERELAKQFDVSRPSLREAIQRLEAKGLLLRR 67 (254)
T ss_pred HHHHHHHHcCCCCCCCcCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe
Confidence 4678999999999999999999999999999999643 332 3665543
|
|
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0058 Score=57.16 Aligned_cols=311 Identities=12% Similarity=0.140 Sum_probs=170.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHHHHHH-HH---hc----CCC-----CEEEE-eCCCC
Q 045431 96 EGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDISRL-QI---VF----GSN-----VTMAV-QDPSY 159 (433)
Q Consensus 96 ~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~al~~l-~~---l~----~~g-----d~Vl~-~~p~~ 159 (433)
.+.+.|.-.++..-..+.+-..+.. +|....|.|+-..|+.+.++++ .+ .+ ..| +-|+. .+-+|
T Consensus 128 tn~~TYEiAPvF~lmE~~vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesH 207 (510)
T KOG0629|consen 128 TNMFTYEIAPVFVLMEEEVLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESH 207 (510)
T ss_pred CCCceEEecceEEeehHHHHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccch
Confidence 4455665555555555555555443 5554457888888888888763 21 12 112 34443 66688
Q ss_pred hhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC-----CC--CccEEEEcCC-CCccccCCCHHHHHHH
Q 045431 160 PAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST-----VA--RTDIIFFCSP-NNPTGAAATREQLTRL 230 (433)
Q Consensus 160 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~--~~~~i~l~~p-~nPtG~~~~~~~~~~i 230 (433)
.++......+|.- . ..++.++.+..+...++ +++ .. .+-.++=++. ....|. -+++..|
T Consensus 208 YSi~kaAa~lg~g-------t--d~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GA---FDdL~~i 275 (510)
T KOG0629|consen 208 YSIKKAAAFLGLG-------T--DHCIKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGA---FDDLNGI 275 (510)
T ss_pred hhHHHHHHHhccC-------C--ceeEEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeec---cCcHHHH
Confidence 8888888888731 1 36777777765544333 432 11 1222221122 344455 4558999
Q ss_pred HHHHHHcCCEEEEeccccccccCC-CCC-cccccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHH
Q 045431 231 VQFAKDNGSIIVYDSAYALYISDD-NPR-SIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFN 308 (433)
Q Consensus 231 ~~~a~~~~~~li~De~~~~~~~~~-~~~-~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~ 308 (433)
+++|++|++++.+|.+|++...-+ ... .+..+... + -+-.+.+|.+| +.+.++....+.+-+. +...
T Consensus 276 adiC~k~~lWmHvDAAwGGglLmS~k~R~kl~Giera-~--SvtwnpHK~~g-aplqCsa~l~r~~gll-------~~Cn 344 (510)
T KOG0629|consen 276 ADICEKHKLWMHVDAAWGGGLLMSRKHRHKLTGIERA-N--SVTWNPHKLMG-APLQCSAFLTREEGLL-------QRCN 344 (510)
T ss_pred HHHHHhcCEEEEeecccccccccChhhHhhccCcccc-C--ceeecHHHhhc-CcchhhHHHHHHHHHH-------Hhhc
Confidence 999999999999999998732222 111 12122111 1 34557899998 8888887776655431 1111
Q ss_pred HHHh-----------hccCCCcHHHHHH-------HHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeee-c--C
Q 045431 309 RIVC-----------TCFNGASNISQAG-------GLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVY-G--G 366 (433)
Q Consensus 309 ~~~~-----------~~~~~~~~~~q~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~-~--~ 366 (433)
+..+ .+.-+.....|-. .--+++..+....++..+++-+.++++.+.+++. ++..+ . |
T Consensus 345 ~~~A~YLFq~dK~YdvS~DTgdK~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l~~~~p 424 (510)
T KOG0629|consen 345 QMSAIYLFQQDKFYDVSYDTGDKAIQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFEMLFELEP 424 (510)
T ss_pred ccchhhhhccCceeecccccccchhhcCccccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhcccceehhcCCC
Confidence 1000 0001112222211 1222334455567888889999999999999987 54432 2 3
Q ss_pred CCccEEEEECC----CC-ChH-----------HHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc---ChhHHHHHHHH
Q 045431 367 KNAPYVWVQFP----GR-SSW-----------DVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG---HRGNVLEACKR 427 (433)
Q Consensus 367 ~~g~~~~~~~~----~~-~~~-----------~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~---~~~~l~~~l~~ 427 (433)
+..++.+--+| +. .+. .+-.+++++ |-....=... ...+++||+.+.. +.++++-.++.
T Consensus 425 e~~nv~fw~vp~~lR~~~~~~e~~~rL~kVaPkIK~~Mm~~-Gt~Mi~YqPl-~~~~nffr~v~sn~a~~~ad~dflldE 502 (510)
T KOG0629|consen 425 EHVNVCFWYVPPSLRGWQENPERDSRLVKVAPKIKERMMKK-GTTMIGYQPL-GDKPNFFRMVISNPALTEADLDFLLDE 502 (510)
T ss_pred ceEEEeeccCchHhccCcccchhhhHHHhhCcHHHHHHHhc-cceeeEeccc-ccccchhheecccchhhhhhHHHHHHH
Confidence 33333322222 11 111 223344444 5555321111 2236789998633 68888888888
Q ss_pred HHHh
Q 045431 428 FKHL 431 (433)
Q Consensus 428 l~~~ 431 (433)
|..+
T Consensus 503 Ierl 506 (510)
T KOG0629|consen 503 IERL 506 (510)
T ss_pred HHHh
Confidence 7654
|
|
| >PRK10079 phosphonate metabolism transcriptional regulator PhnF; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=5.9e-06 Score=74.30 Aligned_cols=48 Identities=15% Similarity=0.132 Sum_probs=38.3
Q ss_pred ccccccccccccccccCCChhhHHHHHhcccccccccc---C-CCCCCcHHHH
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLGK---L-QAGYLFPEIA 50 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~~---l-~~g~~~~~~~ 50 (433)
++|++.|.+ .+++|++|||+++||++++|||.|+-++ | .+|++....+
T Consensus 19 ~~L~~~I~~-~~~~G~~LPsE~eLa~~~~VSR~TVR~Al~~L~~eGli~r~~G 70 (241)
T PRK10079 19 AKLEQELRQ-HYRCGDYLPAEQQLAARYEVNRHTLRRAIDQLVEKGWVQRRQG 70 (241)
T ss_pred HHHHHHHhc-ccCCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecC
Confidence 357788876 9999999999999999999999996443 3 3477776433
|
|
| >PRK10421 DNA-binding transcriptional repressor LldR; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=1.8e-05 Score=71.81 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=34.0
Q ss_pred ccccccccccccccccCCChhhHHHHHhccccccccc
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLG 38 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~ 38 (433)
++|+++|.+|.|+||++||++++||+++||||+|+-.
T Consensus 9 ~~L~~~I~~g~l~pG~~LpsE~eLae~~gVSRtpVRE 45 (253)
T PRK10421 9 DRVRALIEEKNLEAGMKLPAERQLAMQLGVSRNSLRE 45 (253)
T ss_pred HHHHHHHHcCCCCCCCcCCCHHHHHHHhCCCHHHHHH
Confidence 4689999999999999999999999999999999643
|
|
| >PRK03837 transcriptional regulator NanR; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=2e-05 Score=70.87 Aligned_cols=36 Identities=11% Similarity=-0.066 Sum_probs=33.5
Q ss_pred ccccccccccccccccCCChhhHHHHHhcccccccc
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNL 37 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~ 37 (433)
++++.+|.+|.++||++||++++||+++||||+|+-
T Consensus 20 ~~l~~~I~~g~l~pG~~Lp~E~~Lae~~gVSRt~VR 55 (241)
T PRK03837 20 ERLEQMIRSGEFGPGDQLPSERELMAFFGVGRPAVR 55 (241)
T ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHhCCCHHHHH
Confidence 467899999999999999999999999999999963
|
|
| >PRK10225 DNA-binding transcriptional repressor UxuR; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=2e-05 Score=71.67 Aligned_cols=48 Identities=17% Similarity=-0.013 Sum_probs=39.0
Q ss_pred ccccccccccccccccCCChhhHHHHHhcccccccc---ccCC-CCCCcHHH
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNL---GKLQ-AGYLFPEI 49 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~---~~l~-~g~~~~~~ 49 (433)
+++++.|.+|+|+||++||++++||+++||||+|+- ..|. .|++....
T Consensus 16 ~~l~~~I~~g~l~pG~~LpsE~eLa~~~gVSRtpVREAL~~L~~eGlV~~~~ 67 (257)
T PRK10225 16 AMIRDLIIKTPYNPGERLPPEREIAEMLDVTRTVVREALIMLEIKGLVEVRR 67 (257)
T ss_pred HHHHHHHHhCCCCCCCcCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEec
Confidence 468999999999999999999999999999999963 3333 36665443
|
|
| >TIGR03337 phnR transcriptional regulator protein | Back alignment and domain information |
|---|
Probab=97.17 E-value=7.7e-05 Score=66.67 Aligned_cols=39 Identities=13% Similarity=0.047 Sum_probs=34.8
Q ss_pred ccccccccccccccccCCChhhHHHHHhccccccccccC
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLGKL 40 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~~l 40 (433)
+.++++|++|.+++|++|||+++||++++|||.|+.+++
T Consensus 8 ~~l~~~I~~g~~~~g~~lPsE~eLa~~~~Vsr~Tvr~Al 46 (231)
T TIGR03337 8 DHLSYQIRAGALLPGDKLPSERDLGERFNTTRVTIREAL 46 (231)
T ss_pred HHHHHHHHcCCCCCCCcCcCHHHHHHHHCCCHHHHHHHH
Confidence 467889999999999999999999999999999975543
|
This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Salmonella, Vibrio Aeromonas hydrophila, Hahella chejuensis and Psychromonas ingrahamii. |
| >PRK11414 colanic acid/biofilm transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00015 Score=64.36 Aligned_cols=36 Identities=8% Similarity=-0.156 Sum_probs=32.2
Q ss_pred ccccccccccccccccCCChhhHHHHHhccccccccc
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLG 38 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~ 38 (433)
++++++|.+|+|+||++||. ++||+.|||||+|+-.
T Consensus 18 ~~l~~~I~~g~l~pG~~L~e-~~La~~lgVSRtpVRE 53 (221)
T PRK11414 18 NDLKHQLSIGALKPGARLIT-KNLAEQLGMSITPVRE 53 (221)
T ss_pred HHHHHHHHhCCCCCCCccCH-HHHHHHHCCCchhHHH
Confidence 46899999999999999996 7999999999999643
|
|
| >KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.11 Score=46.29 Aligned_cols=329 Identities=15% Similarity=0.196 Sum_probs=166.2
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCC--CCC-CCCCCHHHHHHHHHHHhccCCCCC-CcEEEc-CChHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYS--GYG-AEQGEKPLRAAIASTFYKDLGIEE-GDIFVS-DGAKCD 138 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~Y~-~~~g~~~lr~~la~~l~~~~~~~~-~~i~~~-~G~~~a 138 (433)
.+++|+.|. -..|..++..+++.+-+... .++. .-+ .+.....+...--+.+...+.++. -.|++. .|++.-
T Consensus 7 ~vvnFaaGP--Aklp~~VL~e~qkdl~n~~g-~GisV~EmSHRsk~f~kii~~tes~lreLlniPdn~~vlf~QGGGt~q 83 (370)
T KOG2790|consen 7 RVVNFAAGP--AKLPESVLLEAQKDLLNFNG-SGISVMEMSHRSKDFAKIINDTESLLRELLNIPDNYKVLFLQGGGTGQ 83 (370)
T ss_pred ceeecCCCc--ccCCHHHHHHHHHHhhccCC-CcceEEEecccchhHHHHHHHHHHHHHHHHcCCCceeEEEEeCCCccc
Confidence 589998885 34688888778877765432 2222 111 122222222222222222335543 355544 455555
Q ss_pred HHHH-HHhc--CCC---CEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccC-CcccC---CCCCCCccE
Q 045431 139 ISRL-QIVF--GSN---VTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAEN-GFFPD---LSTVARTDI 208 (433)
Q Consensus 139 l~~l-~~l~--~~g---d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~ 208 (433)
+.++ ..++ +.| |.|+.-+=+-..+.++ +.+|- ...+..+..... +-.++ .+..++.+-
T Consensus 84 FaAv~lNL~glK~g~~AdYiVTGsWS~KA~~EA-kk~~~-----------~~~V~~~~k~y~ygkvPd~~~w~~~~da~y 151 (370)
T KOG2790|consen 84 FAAVPLNLIGLKHGRCADYVVTGSWSAKAAEEA-KKYGT-----------PNIVIPKLKSYTYGKVPDPSTWELNPDASY 151 (370)
T ss_pred ccccchhhhccccCCccceEEeccccHHHHHHH-HhhCC-----------ceEEeccccccccCcCCChhhcccCCCccE
Confidence 5543 4444 555 5555443222223332 22331 112222222111 01111 223356667
Q ss_pred EEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceee
Q 045431 209 IFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGW 288 (433)
Q Consensus 209 i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~ 288 (433)
+|+|.....-|+-++.-- .-.-++.++|.|-... |.. +|..+..+ -+++.+-.|.+|++| +-.
T Consensus 152 vyyCaNETVHGVEf~~~P------~~~~~~~vlVaDmSSn-flS--rpvDvsk~------gvi~aGAQKN~G~aG--~Tv 214 (370)
T KOG2790|consen 152 VYYCANETVHGVEFDFIP------VNDPKGAVLVADMSSN-FLS--RPVDVSKF------GVIFAGAQKNVGPAG--VTV 214 (370)
T ss_pred EEEecCceeeceecCCCC------CCCCCCceEEEecccc-hhc--CCccchhc------ceEEeccccccCccc--cEE
Confidence 888855555565443211 1123578888887544 322 24433322 255677899999888 455
Q ss_pred eeccccccccCCc--chhHHHHHH--HhhccCCCcHHHHH----HHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-
Q 045431 289 TVIPKELLFSDGF--PVAKDFNRI--VCTCFNGASNISQA----GGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL- 359 (433)
Q Consensus 289 l~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~q~----~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 359 (433)
++++++++-.... ...-++..+ ..+..++++....+ +...+++..+. ..+.+.-.++.+.+.+.+.+.
T Consensus 215 vivr~dllg~~~~~tP~v~dyk~~~~NnSlyNTpP~f~iy~~~Lv~~~il~~GGl---~a~e~~n~~KskllYd~iD~s~ 291 (370)
T KOG2790|consen 215 VIVRKDLLGNALDITPSVLDYKIMDKNNSLYNTPPCFGIYVMGLVFEWILEKGGL---AAMEKLNQEKSKLLYDAIDNSN 291 (370)
T ss_pred EEEehhhhcccccCCccccceeeeccccccccCCCeeeeeehhhHHHHHHhcccH---HHHHHHHHHHHHHHHHHHHhcC
Confidence 6677777521000 000001000 11112223333222 22333444443 666666778899999999987
Q ss_pred CCeeecC----CCccEEEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc--ChhHHHHHHHHHHHhh
Q 045431 360 GFKVYGG----KNAPYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG--HRGNVLEACKRFKHLY 432 (433)
Q Consensus 360 g~~~~~~----~~g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~--~~~~l~~~l~~l~~~l 432 (433)
|+...+- .+-+.+.+++. .....+++.+..++ +..-.-|. ..-+.||-|+++ +-++.+.++.-|+++.
T Consensus 292 gfy~cpVe~~~RS~MNV~Fri~~d~Le~eFLkeA~~~-~mv~LKGh----RSVGGiRASlYNAisv~~~q~L~~~m~~F~ 366 (370)
T KOG2790|consen 292 GFYRCPVEPSVRSRMNVPFRIEKDELEAEFLKEAAKE-HMVQLKGH----RSVGGIRASLYNAISVEEVQKLAAFMKEFQ 366 (370)
T ss_pred CeEEcccchhhhhhcccceeecchHHHHHHHHHHHHh-hhhccccc----cccccchhhhhccccHHHHHHHHHHHHHHH
Confidence 7665432 23456667775 33455677777766 44333332 224679999865 8899999998888764
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.013 Score=62.90 Aligned_cols=226 Identities=11% Similarity=0.066 Sum_probs=126.6
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHHHHHHHHhcCCCCEEEEeCCCC
Q 045431 82 TSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSY 159 (433)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~al~~l~~l~~~gd~Vl~~~p~~ 159 (433)
+..+...+.+ ..++-|.++.|...+|..||.|+.. ++..++++|++.++-..++..+..++.|-=.++=+.-+-
T Consensus 407 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1082)
T PLN02672 407 LAYLASALKG----LSYFPCEPPAGSKRFRNLIAGFMRIYHHIPLTPDNVVVFPSRAVAIENALRLFSPRLAIVDEHLTR 482 (1082)
T ss_pred HHHHHHHHcc----CCCCCCCCCccchHHHHHHHHHHHHhcCCcCCccceEEeccHHHHHHHHHHhhChHHHhhhhhhhc
Confidence 3445555554 6778899999999999999999975 888899999999999999976544444431111111111
Q ss_pred hhhhhhHHHhCCcc--cccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHc
Q 045431 160 PAYVDSSVIMGQTG--EFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDN 237 (433)
Q Consensus 160 ~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~ 237 (433)
.--...+..+.+.+ .....+ ....++.-|.. .+...++-+.-++++++..-.+ +-..+....+.|++.+++.
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 556 (1082)
T PLN02672 483 WLPKKWLTSLAIENATSDSKSD-DVITVIEAPRQ--SDLVIELIKKLKPQVVVTGMAD---FEMRTSTAFEHLLNVTAEI 556 (1082)
T ss_pred cCCHHHHhHhhhhcccccCccC-CeEEEEeCCCc--chHHHHHHHhCCCeEEEEeccc---hhhhhHHHHHHHHHHHHhh
Confidence 11112222222111 000000 00122222211 1222233334577776654333 2223455689999999999
Q ss_pred CCEEEEecccc-ccccCCCCCccccc-C--CCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhh
Q 045431 238 GSIIVYDSAYA-LYISDDNPRSIFEI-P--GAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCT 313 (433)
Q Consensus 238 ~~~li~De~~~-~~~~~~~~~~~~~~-~--~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~ 313 (433)
|+.++.|..-. ++.....+..+..+ . ..+.+..++-++-|.-=.+.+-+.|++.-++-+ .+.+.+....
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 629 (1082)
T PLN02672 557 GARLFLDISDHLELSSLPGSNGVLKYLAGHPLPSHAAIICGLVKNQVYSDLEVAFVISENEAV-------LKALSKTGEV 629 (1082)
T ss_pred CcEEEEehhhheeeccCCCcccHHHHhcCCCCCcchhHhhhhhhccccccceEEEEecCcHHH-------HHHHHHHHHh
Confidence 99999998533 33333222222221 1 224455666678775556899999998776665 3444443333
Q ss_pred ccCCCcHHHHH
Q 045431 314 CFNGASNISQA 324 (433)
Q Consensus 314 ~~~~~~~~~q~ 324 (433)
....++.++|.
T Consensus 630 ~~~~~~~~~~~ 640 (1082)
T PLN02672 630 LEGRTAIISQF 640 (1082)
T ss_pred hccchHHHHHH
Confidence 34445666664
|
|
| >PRK11534 DNA-binding transcriptional regulator CsiR; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.00031 Score=62.37 Aligned_cols=35 Identities=3% Similarity=-0.259 Sum_probs=31.9
Q ss_pred ccccccccccccccccCCChhhHHHHHhcccccccc
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNL 37 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~ 37 (433)
++|+++|-+|.++||++||. ++||+++||||+++-
T Consensus 14 ~~i~~~I~~g~l~pG~~L~e-~eLae~lgVSRtpVR 48 (224)
T PRK11534 14 RWLKNDIIRGNFQPDEKLRM-SLLTSRYALGVGPLR 48 (224)
T ss_pred HHHHHHHHhCCCCCCCcCCH-HHHHHHHCCChHHHH
Confidence 57899999999999999985 899999999999963
|
|
| >smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.00028 Score=48.00 Aligned_cols=36 Identities=17% Similarity=0.017 Sum_probs=32.5
Q ss_pred cccccccccccccccCCChhhHHHHHhccccccccc
Q 045431 3 NAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLG 38 (433)
Q Consensus 3 ~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~ 38 (433)
+++..+..+.+++|.+|||+++||+.+++|++|+..
T Consensus 4 ~l~~~i~~~~~~~~~~l~s~~~la~~~~vs~~tv~~ 39 (60)
T smart00345 4 RLREDIVSGELRPGDKLPSERELAAQLGVSRTTVRE 39 (60)
T ss_pred HHHHHHHcCCCCCCCcCcCHHHHHHHHCCCHHHHHH
Confidence 567888899999999999999999999999999654
|
|
| >TIGR03338 phnR_burk phosphonate utilization associated transcriptional regulator | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.00054 Score=60.29 Aligned_cols=35 Identities=17% Similarity=-0.036 Sum_probs=32.0
Q ss_pred ccccccccccccccccCCChhhHHHHHhcccccccc
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNL 37 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~ 37 (433)
++++.+|.+|.++||++| |+++||++|||||+|+-
T Consensus 18 ~~l~~~I~~g~l~pG~~L-~e~~La~~lgVSRtpVR 52 (212)
T TIGR03338 18 DEIERAILSGELPPGAKL-NESDIAARLGVSRGPVR 52 (212)
T ss_pred HHHHHHHHcCCCCCCCEe-cHHHHHHHhCCChHHHH
Confidence 468899999999999999 58999999999999963
|
This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Polaromonas, Burkholderia, Ralstonia and Verminephrobacter. |
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.33 Score=48.31 Aligned_cols=300 Identities=13% Similarity=0.141 Sum_probs=165.1
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChH---HHHHHHHHhc-CCC----CEEEEeCCCChhhhhhHHHhCCcccc
Q 045431 104 EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAK---CDISRLQIVF-GSN----VTMAVQDPSYPAYVDSSVIMGQTGEF 175 (433)
Q Consensus 104 ~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~---~al~~l~~l~-~~g----d~Vl~~~p~~~~~~~~~~~~g~~~~~ 175 (433)
.+|+.++-+.+.++|..-.|.+.-.....+|++ .++..|.+.+ ..| ..-+++.-.|........++|
T Consensus 577 aqGY~~lf~~Le~~Lc~iTG~D~~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNPASA~Mag----- 651 (1001)
T KOG2040|consen 577 AQGYQQLFTELEKDLCEITGFDSFSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNPASAAMAG----- 651 (1001)
T ss_pred HhhHHHHHHHHHHHhheeecccceeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCChhhHHhcC-----
Confidence 578899999999998764344433444456664 3455565554 344 234778778877777888888
Q ss_pred cccccccceEEEeecCccCCcccC-CC----C-CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccc
Q 045431 176 QKDAEKYGKIEYMRCTAENGFFPD-LS----T-VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYAL 249 (433)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~-~~----~-~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~ 249 (433)
.+++++.++.++.++.. +. + ..+-.++.++.|+. .|+- .+.+++++++.++||--|..|.+...
T Consensus 652 -------mkvvpV~~~~~G~id~~dLk~kaekh~~~Laa~MvTYPST-~Gvf--E~~i~d~cd~iHehGGQVYlDGANMN 721 (1001)
T KOG2040|consen 652 -------MKVVPVGCDANGNIDMVDLKAKAEKHKDNLAALMVTYPST-HGVF--EEGIDDICDIIHEHGGQVYLDGANMN 721 (1001)
T ss_pred -------CEEEEeeccCCCCccHHHHHHHHHHhhhhhheeEEecccc-cccc--cccHHHHHHHHHhcCCEEEecCCCcc
Confidence 58888888877654332 21 1 24566788877743 3443 56689999999999999999987653
Q ss_pred cccCCCCCcccccCCCCcceEEEeccccccccc----ccceeeeecccccccc-CCcchhHH--------HHHHHhhccC
Q 045431 250 YISDDNPRSIFEIPGAKEVAIETSSFSKYAGFT----GVRLGWTVIPKELLFS-DGFPVAKD--------FNRIVCTCFN 316 (433)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~----G~r~G~l~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~ 316 (433)
... .+....... -.+.=--++|+|+.| |-.+|=+.+.+.+.-. -...+... +..+ ....+
T Consensus 722 AqV-----Glc~pGd~G-aDV~HLNLHKTFcIPHGGGGPg~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsV-saaP~ 794 (1001)
T KOG2040|consen 722 AQV-----GLCRPGDIG-ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSV-SAAPW 794 (1001)
T ss_pred cee-----cccCCcccc-ccceeecccceeeecCCCCCCCCCccchhhhccccCCCCCccCCCCCCCCCCccce-eccCC
Confidence 111 111110011 112222467877543 3345656665555310 00001110 1111 11112
Q ss_pred CCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCCccE---EEEECC------CCChHHHHH
Q 045431 317 GASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAPY---VWVQFP------GRSSWDVFS 386 (433)
Q Consensus 317 ~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~---~~~~~~------~~~~~~~~~ 386 (433)
.|........+++.--+...+....+..--+.+++.+.|+.+ .+-+..+ .|.. +.+++. +.+..++++
T Consensus 795 -Gsa~ILpISwaYikmMG~~GL~~as~~AiLNaNYMakRLe~hYkil~~~~-~~~vaHEFIlD~r~fK~~agieavDvAK 872 (1001)
T KOG2040|consen 795 -GSALILPISWAYIKMMGSGGLKDASKIAILNANYMAKRLESHYKILFRGE-NGLVAHEFILDLRPFKKTAGIEAVDVAK 872 (1001)
T ss_pred -CcceeehhHHHHHHHhcccccchhhHHHhhhhHHHHHHHhhccceeEecC-CcceeeeeeeechhhccccCCcHHHHHH
Confidence 222222223333332222223444455556778888999886 4444443 3331 345543 356777887
Q ss_pred HHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHh
Q 045431 387 EILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHL 431 (433)
Q Consensus 387 ~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~ 431 (433)
+|. .+|+....-+ |. -.+.+-|-- ..+.+|+++.+++|-++
T Consensus 873 RL~-DYgFHaPTms-wP--V~gtLMIEPTESE~k~ElDRfcdAliSI 915 (1001)
T KOG2040|consen 873 RLM-DYGFHAPTMS-WP--VAGTLMIEPTESEDKAELDRFCDALISI 915 (1001)
T ss_pred HHH-hccCCCCccc-cc--cCCceEeccCccccHHHHHHHHHHHHHH
Confidence 765 5687763332 22 235565553 23567888888887554
|
|
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.077 Score=46.65 Aligned_cols=127 Identities=13% Similarity=0.167 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeec--cccccccCC
Q 045431 223 TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVI--PKELLFSDG 300 (433)
Q Consensus 223 ~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~--~~~~~~~~~ 300 (433)
+++.+++|..+|..|+++-|+..+|+. .....-..+.+-........++.|+.|.|-.| . -|.+++ .+..
T Consensus 172 ~pd~leaiaaica~~diphivnnaygl-qsee~i~~iaa~~~~grida~vqsldknf~vp-v-ggaiia~fk~n~----- 243 (432)
T KOG3843|consen 172 SPDNLEAIAAICAAHDIPHIVNNAYGL-QSEECIHKIAAAAECGRIDAFVQSLDKNFMVP-V-GGAIIAAFKDNF----- 243 (432)
T ss_pred CCchHHHHHHHHHccCchhhhcccccc-chHHHHHHHHHHhhhccHHHHHHHhhhcceee-c-chhHhhHhHHHH-----
Confidence 577899999999999999999999983 22221111221111111225577999988433 1 133332 2333
Q ss_pred cchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-hHHHHHHHHHHHHHHHHHHHHhhcC
Q 045431 301 FPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-KAVHEVIGFYKENTDIIVETFNSLG 360 (433)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~g 360 (433)
++.+.++........++......+-.+-..++ +-+.+..+.+...++.+...-+.+|
T Consensus 244 ---iq~iak~ypgrasa~ps~dllitll~~gqn~f~e~~~eqkemf~~l~~ki~~~ae~~~ 301 (432)
T KOG3843|consen 244 ---IQEIAKMYPGRASASPSLDLLITLLSLGQNAFKELFGEQKEMFLKLRNKIIKFAEAIG 301 (432)
T ss_pred ---HHHHHHhCCCccccCccHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34454443333333333333333333333333 3344445555555555555444443
|
|
| >PF14502 HTH_41: Helix-turn-helix domain | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.0023 Score=40.20 Aligned_cols=27 Identities=22% Similarity=0.031 Sum_probs=23.9
Q ss_pred ccccCCChhhHHHHHhccccccccccC
Q 045431 14 CKCVAAPQEEKIAYKTKVSRNGNLGKL 40 (433)
Q Consensus 14 ~~g~~LPs~r~la~~~~vs~~t~~~~l 40 (433)
++|+|+|++-++++.++||+.|+...+
T Consensus 1 k~GdRi~tI~e~~~~~~vs~GtiQ~Al 27 (48)
T PF14502_consen 1 KVGDRIPTISEYSEKFGVSRGTIQNAL 27 (48)
T ss_pred CCCcccCCHHHHHHHhCcchhHHHHHH
Confidence 589999999999999999999976543
|
|
| >COG1802 GntR Transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.0055 Score=54.61 Aligned_cols=35 Identities=17% Similarity=0.014 Sum_probs=32.4
Q ss_pred ccccccccccccccccCCChhhHHHHHhcccccccc
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNL 37 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~ 37 (433)
+.++.+|-+|+|+||++|. +++||+++|||++++-
T Consensus 23 ~~Lr~~Il~g~l~pG~~l~-e~~La~~~gvSrtPVR 57 (230)
T COG1802 23 EELREAILSGELAPGERLS-EEELAEELGVSRTPVR 57 (230)
T ss_pred HHHHHHHHhCCCCCCCCcc-HHHHHHHhCCCCccHH
Confidence 4689999999999999998 9999999999999963
|
|
| >cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators | Back alignment and domain information |
|---|
Probab=91.47 E-value=0.057 Score=37.13 Aligned_cols=36 Identities=17% Similarity=-0.008 Sum_probs=30.9
Q ss_pred cccccccccccccccCCChhhHHHHHhccccccccc
Q 045431 3 NAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLG 38 (433)
Q Consensus 3 ~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~ 38 (433)
.++..+..+.+.+|.++|+.++||+.+++|++++..
T Consensus 9 ~i~~~i~~~~~~~~~~~~~~~~la~~~~is~~~v~~ 44 (66)
T cd07377 9 QLREAILSGELKPGDRLPSERELAEELGVSRTTVRE 44 (66)
T ss_pred HHHHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHH
Confidence 456677788889999999999999999999998643
|
This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is |
| >COG1737 RpiR Transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=87.74 E-value=8.4 Score=35.38 Aligned_cols=164 Identities=12% Similarity=0.122 Sum_probs=80.3
Q ss_pred CChhhHHHHHhccccccccc---cCC-CCCCcHHHHHHHHHHHhcCCCCceEEecCCCCCC--CChHHHHHHHHHHHhhc
Q 045431 19 APQEEKIAYKTKVSRNGNLG---KLQ-AGYLFPEIARRKAAHMLKYPDAEVISLGIGDTTE--PIPEVITSALAKRSYAL 92 (433)
Q Consensus 19 LPs~r~la~~~~vs~~t~~~---~l~-~g~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~--~~~~~~~~a~~~~~~~~ 92 (433)
.-++++||++.|||.+|+.+ +|. +||-.-+..-... .... .....+- ....+- .....+.+...+.+...
T Consensus 36 ~~si~elA~~a~VS~aTv~Rf~~kLGf~Gf~efk~~l~~~--l~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~t 111 (281)
T COG1737 36 LLSIAELAERAGVSPATVVRFARKLGFEGFSEFKLALAQE--LAEG-RAQLLRE-IAEDDGPESILEKLLAANIAALERT 111 (281)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCCHHHHHHHHHHH--Hhhc-cchhhcc-cCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 55789999999999999864 232 2454333221111 1100 1122222 111110 12234444444444432
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEE-EcCChHHHHHH-H-HHhcCCCCEEEEeCCCChhhhhhHHHh
Q 045431 93 STQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIF-VSDGAKCDISR-L-QIVFGSNVTMAVQDPSYPAYVDSSVIM 169 (433)
Q Consensus 93 ~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~-~~~G~~~al~~-l-~~l~~~gd~Vl~~~p~~~~~~~~~~~~ 169 (433)
. ..-.++--+.+++.+ .+++.|+ ++-|++..+.. + ..+.+=|..+...+-.+... .....+
T Consensus 112 ~----------~~l~~~~l~~av~~L-----~~A~rI~~~G~g~S~~vA~~~~~~l~~ig~~~~~~~d~~~~~-~~~~~~ 175 (281)
T COG1737 112 L----------NLLDEEALERAVELL-----AKARRIYFFGLGSSGLVASDLAYKLMRIGLNVVALSDTHGQL-MQLALL 175 (281)
T ss_pred H----------HhcCHHHHHHHHHHH-----HcCCeEEEEEechhHHHHHHHHHHHHHcCCceeEecchHHHH-HHHHhC
Confidence 1 112244444555555 3555555 45555555543 3 66677777666554444332 222111
Q ss_pred CCcccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEE
Q 045431 170 GQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIV 242 (433)
Q Consensus 170 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li 242 (433)
+ ++--+|.++.. |. ..++.+.++.++++|+.+|
T Consensus 176 ~---------------------------------~~Dv~i~iS~s----G~---t~e~i~~a~~ak~~ga~vI 208 (281)
T COG1737 176 T---------------------------------PGDVVIAISFS----GY---TREIVEAAELAKERGAKVI 208 (281)
T ss_pred C---------------------------------CCCEEEEEeCC----CC---cHHHHHHHHHHHHCCCcEE
Confidence 1 12123444422 22 3558889999999998877
|
|
| >PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms | Back alignment and domain information |
|---|
Probab=84.54 E-value=0.25 Score=31.12 Aligned_cols=20 Identities=30% Similarity=0.169 Sum_probs=15.9
Q ss_pred hhhHHHHHhccccccccccC
Q 045431 21 QEEKIAYKTKVSRNGNLGKL 40 (433)
Q Consensus 21 s~r~la~~~~vs~~t~~~~l 40 (433)
|..++|+.+|||++|+|.-+
T Consensus 23 si~~IA~~~gvsr~TvyR~l 42 (45)
T PF02796_consen 23 SIAEIAKQFGVSRSTVYRYL 42 (45)
T ss_dssp -HHHHHHHTTS-HHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHH
Confidence 59999999999999988643
|
Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C .... |
| >PF13730 HTH_36: Helix-turn-helix domain | Back alignment and domain information |
|---|
Probab=81.39 E-value=0.45 Score=31.35 Aligned_cols=24 Identities=25% Similarity=0.163 Sum_probs=20.2
Q ss_pred ccCCChhhHHHHHhcccccccccc
Q 045431 16 CVAAPQEEKIAYKTKVSRNGNLGK 39 (433)
Q Consensus 16 g~~LPs~r~la~~~~vs~~t~~~~ 39 (433)
|.-=||.+.||+.+|+|++|+.+.
T Consensus 22 ~~~~pS~~~la~~~g~s~~Tv~~~ 45 (55)
T PF13730_consen 22 GGCFPSQETLAKDLGVSRRTVQRA 45 (55)
T ss_pred CCCCcCHHHHHHHHCcCHHHHHHH
Confidence 346789999999999999997654
|
|
| >PRK12423 LexA repressor; Provisional | Back alignment and domain information |
|---|
Probab=80.63 E-value=0.35 Score=42.03 Aligned_cols=40 Identities=18% Similarity=0.062 Sum_probs=26.9
Q ss_pred ccccccccccccccCCChhhHHHHHhc-cccccccccC---C-CCCCcHH
Q 045431 4 AWVQAKRISVCKCVAAPQEEKIAYKTK-VSRNGNLGKL---Q-AGYLFPE 48 (433)
Q Consensus 4 ~~~~~~~g~l~~g~~LPs~r~la~~~~-vs~~t~~~~l---~-~g~~~~~ 48 (433)
+++.+.++.++ ||+|+||+.+| +|++++..++ . .||+...
T Consensus 15 l~~~i~~~g~~-----Ps~~eia~~~g~~s~~~v~~~l~~L~~~G~l~~~ 59 (202)
T PRK12423 15 IRERIAQAGQP-----PSLAEIAQAFGFASRSVARKHVQALAEAGLIEVV 59 (202)
T ss_pred HHHHHHHcCCC-----CCHHHHHHHhCCCChHHHHHHHHHHHHCCCEEec
Confidence 44445555444 99999999999 5898865443 2 3666543
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=80.44 E-value=23 Score=30.82 Aligned_cols=96 Identities=14% Similarity=0.245 Sum_probs=58.0
Q ss_pred CCCCcEEEcCChHHHHHHHHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCC
Q 045431 124 IEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV 203 (433)
Q Consensus 124 ~~~~~i~~~~G~~~al~~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (433)
..-..|++..|+..+..-+..+++.|-.|.+.+|....-...+...| ++..+.-+. ... ..
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~-------------~i~~~~~~~----~~~--dl 67 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQG-------------GITWLARCF----DAD--IL 67 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcC-------------CEEEEeCCC----CHH--Hh
Confidence 34457889999999988888888999888888887654333332223 233332211 111 11
Q ss_pred CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEE-EEecc
Q 045431 204 ARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSII-VYDSA 246 (433)
Q Consensus 204 ~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~l-i~De~ 246 (433)
....+|+ ..|.++ +.-.+|.+.|++.++++ +.|+.
T Consensus 68 ~~~~lVi-~at~d~-------~ln~~i~~~a~~~~ilvn~~d~~ 103 (205)
T TIGR01470 68 EGAFLVI-AATDDE-------ELNRRVAHAARARGVPVNVVDDP 103 (205)
T ss_pred CCcEEEE-ECCCCH-------HHHHHHHHHHHHcCCEEEECCCc
Confidence 2444444 344442 22478999999999888 35554
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 433 | ||||
| 2z1z_A | 432 | Crystal Structure Of Ll-diaminopimelate Aminotransf | 0.0 | ||
| 3eia_A | 432 | Crystal Structure Of K270q Variant Of Ll-Diaminopim | 0.0 | ||
| 3ei8_A | 432 | Crystal Structure Of K270n Variant Of Ll-Diaminopim | 0.0 | ||
| 2z20_A | 432 | Crystal Structure Of Ll-diaminopimelate Aminotransf | 0.0 | ||
| 4fl0_A | 456 | Crystal Structure Of Ald1 From Arabidopsis Thaliana | 1e-152 | ||
| 3qgu_A | 449 | L,L-Diaminopimelate Aminotransferase From Chalmydom | 1e-150 | ||
| 3asa_A | 400 | Crystal Structure Of Apo-Ll-Diaminopimelate Aminotr | 3e-79 | ||
| 2x5d_A | 412 | Crystal Structure Of A Probable Aminotransferase Fr | 6e-20 | ||
| 1dju_A | 388 | Crystal Structure Of Aromatic Aminotransferase From | 1e-15 | ||
| 1gde_A | 389 | Crystal Structure Of Pyrococcus Protein A-1 E-form | 2e-15 | ||
| 1v2d_A | 381 | Crystal Structure Of T.Th Hb8 Glutamine Aminotransf | 1e-14 | ||
| 1j32_A | 388 | Aspartate Aminotransferase From Phormidium Lapideum | 4e-13 | ||
| 1o4s_A | 389 | Crystal Structure Of Aspartate Aminotransferase (Tm | 1e-12 | ||
| 1b5o_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Sin | 7e-12 | ||
| 1bkg_A | 385 | Aspartate Aminotransferase From Thermus Thermophilu | 1e-11 | ||
| 1gc3_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Tet | 1e-11 | ||
| 5bj3_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Tet | 1e-11 | ||
| 1gck_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Dou | 1e-11 | ||
| 1bjw_A | 382 | Aspartate Aminotransferase From Thermus Thermophilu | 5e-11 | ||
| 2o1b_A | 404 | Structure Of Aminotransferase From Staphylococcus A | 3e-10 | ||
| 1xi9_A | 406 | Alanine Aminotransferase From Pyrococcus Furiosus P | 5e-10 | ||
| 2z61_A | 370 | Crystal Structure Of Mj0684 From Methanococcus Jann | 2e-09 | ||
| 3jtx_A | 396 | Crystal Structure Of Aminotransferase (np_283882.1) | 2e-09 | ||
| 3ezs_A | 376 | Crystal Structure Of Aminotransferase Aspb (Np_2074 | 3e-09 | ||
| 2dou_A | 376 | Probable N-Succinyldiaminopimelate Aminotransferase | 6e-09 | ||
| 1u08_A | 386 | Crystal Structure And Reactivity Of Ybdl From Esche | 1e-08 | ||
| 3op7_A | 375 | Crystal Structure Of A Plp-Dependent Aminotransfera | 3e-08 | ||
| 1w7n_A | 422 | Crystal Structure Of Human Kynurenine Aminotransfer | 8e-08 | ||
| 1w7l_A | 422 | Crystal Structure Of Human Kynurenine Aminotransfer | 3e-07 | ||
| 3fvs_A | 422 | Human Kynurenine Aminotransferase I In Complex With | 4e-07 | ||
| 3e2z_B | 410 | Crystal Structure Of Mouse Kynurenine Aminotransfer | 2e-06 | ||
| 3h14_A | 391 | Crystal Structure Of A Putative Aminotransferase Fr | 2e-06 | ||
| 3t32_B | 383 | Crystal Structure Of A Putative C-S Lyase From Baci | 2e-06 | ||
| 3e2f_A | 410 | Crystal Structure Of Mouse Kynurenine Aminotransfer | 7e-06 | ||
| 3ele_A | 398 | Crystal Structure Of Amino Transferase (rer07020700 | 9e-06 | ||
| 3ftb_A | 361 | The Crystal Structure Of The Histidinol-Phosphate A | 1e-05 | ||
| 3fkd_A | 350 | The Crystal Structure Of L-Threonine-O-3-Phosphate | 2e-05 | ||
| 3aov_A | 448 | Crystal Structure Of Pyrococcus Horikoshii Kynureni | 2e-05 | ||
| 1x0m_A | 403 | A Human Kynurenine Aminotransferase Ii Homologue Fr | 2e-05 | ||
| 3b46_A | 447 | Crystal Structure Of Bna3p, A Putative Kynurenine A | 3e-05 | ||
| 3dyd_A | 427 | Human Tyrosine Aminotransferase Length = 427 | 3e-05 | ||
| 2egy_A | 397 | Crystal Structure Of Lysn, Alpha-Aminoadipate Amino | 3e-05 | ||
| 3tcm_A | 500 | Crystal Structure Of Alanine Aminotransferase From | 8e-05 | ||
| 3cq5_A | 369 | Histidinol-Phosphate Aminotransferase From Coryneba | 1e-04 | ||
| 3cq4_A | 376 | Histidinol-Phosphate Aminotransferase From Coryneba | 1e-04 | ||
| 1bw0_A | 416 | Crystal Structure Of Tyrosine Aminotransferase From | 3e-04 | ||
| 3p1t_A | 337 | Crystal Structure Of A Putative Aminotransferase (B | 4e-04 | ||
| 1yiy_A | 429 | Aedes Aegypti Kynurenine Aminotransferase Length = | 5e-04 | ||
| 3cq6_A | 369 | Histidinol-Phosphate Aminotransferase From Coryneba | 5e-04 | ||
| 1lkc_A | 364 | Crystal Structure Of L-Threonine-O-3-Phosphate Deca | 7e-04 | ||
| 3ffh_A | 363 | The Crystal Structure Of Histidinol-phosphate Amino | 8e-04 |
| >pdb|2Z1Z|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase From Arabidopsis Thaliana Complexed With L-malate Ion Length = 432 | Back alignment and structure |
|
| >pdb|3EIA|A Chain A, Crystal Structure Of K270q Variant Of Ll-Diaminopimelate Aminotransferase From Arabidopsis Thaliana Complexed With L-Glu: External Aldimine Form Length = 432 | Back alignment and structure |
|
| >pdb|3EI8|A Chain A, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate Aminotransferase From Arabidopsis Thaliana Complexed With Ll-Dap: External Aldimine Form Length = 432 | Back alignment and structure |
|
| >pdb|2Z20|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase From Arabidopsis Thaliana Length = 432 | Back alignment and structure |
|
| >pdb|4FL0|A Chain A, Crystal Structure Of Ald1 From Arabidopsis Thaliana Length = 456 | Back alignment and structure |
|
| >pdb|3QGU|A Chain A, L,L-Diaminopimelate Aminotransferase From Chalmydomonas Reinhardtii Length = 449 | Back alignment and structure |
|
| >pdb|3ASA|A Chain A, Crystal Structure Of Apo-Ll-Diaminopimelate Aminotransferase From Chlamydia Trachomatis Length = 400 | Back alignment and structure |
|
| >pdb|2X5D|A Chain A, Crystal Structure Of A Probable Aminotransferase From Pseudomonas Aeruginosa Length = 412 | Back alignment and structure |
|
| >pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotransferase From Pyrococcus Horikoshii Ot3 Length = 388 | Back alignment and structure |
|
| >pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein A-1 E-form Length = 389 | Back alignment and structure |
|
| >pdb|1V2D|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase Length = 381 | Back alignment and structure |
|
| >pdb|1J32|A Chain A, Aspartate Aminotransferase From Phormidium Lapideum Length = 388 | Back alignment and structure |
|
| >pdb|1O4S|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1255) From Thermotoga Maritima At 1.90 A Resolution Length = 389 | Back alignment and structure |
|
| >pdb|1B5O|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Single Mutant 1 Length = 385 | Back alignment and structure |
|
| >pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus With Maleate Length = 385 | Back alignment and structure |
|
| >pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 2 Complexed With Tryptophan Length = 385 | Back alignment and structure |
|
| >pdb|5BJ3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 1 Length = 385 | Back alignment and structure |
|
| >pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double Mutant 1 Complexed With Aspartate Length = 385 | Back alignment and structure |
|
| >pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus Length = 382 | Back alignment and structure |
|
| >pdb|2O1B|A Chain A, Structure Of Aminotransferase From Staphylococcus Aureus Length = 404 | Back alignment and structure |
|
| >pdb|1XI9|A Chain A, Alanine Aminotransferase From Pyrococcus Furiosus Pfu-1397077-001 Length = 406 | Back alignment and structure |
|
| >pdb|2Z61|A Chain A, Crystal Structure Of Mj0684 From Methanococcus Jannaschii Reveals Its Similarity In The Active Site To Kynurenine Aminotransferases Length = 370 | Back alignment and structure |
|
| >pdb|3JTX|A Chain A, Crystal Structure Of Aminotransferase (np_283882.1) From Neisseria Meningitidis Z2491 At 1.91 A Resolution Length = 396 | Back alignment and structure |
|
| >pdb|3EZS|A Chain A, Crystal Structure Of Aminotransferase Aspb (Np_207418.1) From Helicobacter Pylori 26695 At 2.19 A Resolution Length = 376 | Back alignment and structure |
|
| >pdb|2DOU|A Chain A, Probable N-Succinyldiaminopimelate Aminotransferase (Ttha0342) From Thermus Thermophilus Hb8 Length = 376 | Back alignment and structure |
|
| >pdb|1U08|A Chain A, Crystal Structure And Reactivity Of Ybdl From Escherichia Coli Identify A Methionine Aminotransferase Function. Length = 386 | Back alignment and structure |
|
| >pdb|3OP7|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase (Zp_03625122.1) From Streptococcus Suis 89-1591 At 1.70 A Resolution Length = 375 | Back alignment and structure |
|
| >pdb|1W7N|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I In Pmp Form Length = 422 | Back alignment and structure |
|
| >pdb|1W7L|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I Length = 422 | Back alignment and structure |
|
| >pdb|3FVS|A Chain A, Human Kynurenine Aminotransferase I In Complex With Glycerol Length = 422 | Back alignment and structure |
|
| >pdb|3E2Z|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii In Complex With Kynurenine Length = 410 | Back alignment and structure |
|
| >pdb|3H14|A Chain A, Crystal Structure Of A Putative Aminotransferase From Silicibacter Pomeroyi Length = 391 | Back alignment and structure |
|
| >pdb|3E2F|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii, Plp-Bound Form Length = 410 | Back alignment and structure |
|
| >pdb|3ELE|A Chain A, Crystal Structure Of Amino Transferase (rer070207001803) From Eubacterium Rectale At 2.10 A Resolution Length = 398 | Back alignment and structure |
|
| >pdb|3FTB|A Chain A, The Crystal Structure Of The Histidinol-Phosphate Aminotransferase From Clostridium Acetobutylicum Length = 361 | Back alignment and structure |
|
| >pdb|3FKD|A Chain A, The Crystal Structure Of L-Threonine-O-3-Phosphate Decarboxylase From Porphyromonas Gingivalis Length = 350 | Back alignment and structure |
|
| >pdb|3AOV|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine Aminotransferase In Complex With Plp Length = 448 | Back alignment and structure |
|
| >pdb|1X0M|A Chain A, A Human Kynurenine Aminotransferase Ii Homologue From Pyrococcus Horikoshii Ot3 Length = 403 | Back alignment and structure |
|
| >pdb|3B46|A Chain A, Crystal Structure Of Bna3p, A Putative Kynurenine Aminotransferase From Saccharomyces Cerevisiae Length = 447 | Back alignment and structure |
|
| >pdb|3DYD|A Chain A, Human Tyrosine Aminotransferase Length = 427 | Back alignment and structure |
|
| >pdb|2EGY|A Chain A, Crystal Structure Of Lysn, Alpha-Aminoadipate Aminotransferase (Substrate Free Form), From Thermus Thermophilus Hb27 Length = 397 | Back alignment and structure |
|
| >pdb|3TCM|A Chain A, Crystal Structure Of Alanine Aminotransferase From Hordeum Vulgare Length = 500 | Back alignment and structure |
|
| >pdb|3CQ5|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium Glutamicum In Complex With Pmp Length = 369 | Back alignment and structure |
|
| >pdb|3CQ4|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium Glutamicum Length = 376 | Back alignment and structure |
|
| >pdb|1BW0|A Chain A, Crystal Structure Of Tyrosine Aminotransferase From Trypanosoma Cruzi Length = 416 | Back alignment and structure |
|
| >pdb|3P1T|A Chain A, Crystal Structure Of A Putative Aminotransferase (Bpsl1724) From Burkholderia Pseudomallei K96243 At 2.60 A Resolution Length = 337 | Back alignment and structure |
|
| >pdb|1YIY|A Chain A, Aedes Aegypti Kynurenine Aminotransferase Length = 429 | Back alignment and structure |
|
| >pdb|3CQ6|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium Glutamicum Holo-Form (Plp Covalently Bound ) Length = 369 | Back alignment and structure |
|
| >pdb|1LKC|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate Decarboxylase From Salmonella Enterica Length = 364 | Back alignment and structure |
|
| >pdb|3FFH|A Chain A, The Crystal Structure Of Histidinol-phosphate Aminotransferase From Listeria Innocua Clip11262. Length = 363 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* Length = 432 | Back alignment and structure |
|---|
Score = 603 bits (1556), Expect = 0.0
Identities = 355/426 (83%), Positives = 396/426 (92%), Gaps = 1/426 (0%)
Query: 8 AKRISVCKCVAAPQEEKIAYKTKVSRNGNLGKLQAGYLFPEIARRKAAHMLKYPDAEVIS 67
AKR++ CKCVA PQE KI YKTKVSRN N+ KLQAGYLFPEIARR++AH+LKYPDA+VIS
Sbjct: 2 AKRVNTCKCVATPQE-KIEYKTKVSRNSNMSKLQAGYLFPEIARRRSAHLLKYPDAQVIS 60
Query: 68 LGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEG 127
LGIGDTTEPIPEVITSA+AK+++ LST EGYSGYGAEQG KPLRAAIA TFY LGI +
Sbjct: 61 LGIGDTTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDD 120
Query: 128 DIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEY 187
D+FVSDGAKCDISRLQ++FGSNVT+AVQDPSYPAYVDSSVIMGQTG+F D +KYG IEY
Sbjct: 121 DVFVSDGAKCDISRLQVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEY 180
Query: 188 MRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAY 247
MRCT ENGFFPDLSTV RTDIIFFCSPNNPTGAAATREQLT+LV+FAK NGSIIVYDSAY
Sbjct: 181 MRCTPENGFFPDLSTVGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAY 240
Query: 248 ALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDF 307
A+Y+SDDNPRSIFEIPGA+EVA+ET+SFS YAGFTGVRLGWTVIPK+LL+SDGFPVAKDF
Sbjct: 241 AMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDF 300
Query: 308 NRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGK 367
NRI+CTCFNGASNISQAG LACL+PEG +A+H+VIGFYKENT+II++TF SLG+ VYGGK
Sbjct: 301 NRIICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSLGYDVYGGK 360
Query: 368 NAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKR 427
NAPYVWV FP +SSWDVF+EILEKTHVVTTPGSGFGPGGEGF+RVSAFGHR N+LEAC+R
Sbjct: 361 NAPYVWVHFPNQSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENILEACRR 420
Query: 428 FKHLYK 433
FK LYK
Sbjct: 421 FKQLYK 426
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} Length = 449 | Back alignment and structure |
|---|
Score = 563 bits (1453), Expect = 0.0
Identities = 267/419 (63%), Positives = 325/419 (77%), Gaps = 3/419 (0%)
Query: 16 CVAAPQEEKIAYKTKVSRNGNLGKLQAGYLFPEIARRKAAHMLKYPDAEVISLGIGDTTE 75
+ A V RN N GKL+AGYLFPEIARR+ AH K PDA++ISLGIGDTTE
Sbjct: 22 TAVVQAVAQRAGTIDVQRNENFGKLRAGYLFPEIARRRKAHQEKNPDAKIISLGIGDTTE 81
Query: 76 PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGA 135
P+P+ I A+AK + L+T+EGYSGYGAEQG+ LR A+ASTFY G +IF+SDG+
Sbjct: 82 PLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRAADEIFISDGS 141
Query: 136 KCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENG 195
KCDI+R+Q++FGS T+AVQDPSYP YVD+SV+MG TG+ + + IEYM C +N
Sbjct: 142 KCDIARIQMMFGSKPTVAVQDPSYPVYVDTSVMMGMTGDH--NGTGFDGIEYMVCNPDNH 199
Query: 196 FFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN 255
FFPDLS RTDIIFFCSPNNPTGAAATR QLT LV FA+ NGSI+VYD+AYALYIS+ +
Sbjct: 200 FFPDLSKAKRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPD 259
Query: 256 -PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTC 314
P++I+EIPGA EVAIET SFSKYAGFTGVRLGWTV+PK L +++G PV D+NR++ TC
Sbjct: 260 CPKTIYEIPGADEVAIETCSFSKYAGFTGVRLGWTVVPKALKYANGEPVHADWNRVMTTC 319
Query: 315 FNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWV 374
FNGASNI QAGGLACL PEG K ++ +I FYKEN I+ TF +GF VYGG +APY+WV
Sbjct: 320 FNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEMGFSVYGGDDAPYIWV 379
Query: 375 QFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433
FPG+ SWDVF+EILE+ ++VTTPGSG+GP GEGF+R SAFG R N+LEA +RFK Y
Sbjct: 380 GFPGKPSWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAFGSRENILEAVRRFKEAYG 438
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* Length = 400 | Back alignment and structure |
|---|
Score = 516 bits (1331), Expect = 0.0
Identities = 164/402 (40%), Positives = 239/402 (59%), Gaps = 18/402 (4%)
Query: 31 VSRNGNLGKLQAGYLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSY 90
+ RN + L YLF ++ +R A L+ P VI+L IGDTT+P+ + A A
Sbjct: 1 MKRNPHFVSLTKNYLFADLQKRVAQFRLENPQHTVINLSIGDTTQPLNASVAEAFASSIA 60
Query: 91 ALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQIVFGSNV 150
LS+ GYG + G LR ++ + ++ +IF+SDGAK D+ RL FG N
Sbjct: 61 RLSSPTTCRGYGPDFGLPALRQKLSE-DFYRGFVDAKEIFISDGAKVDLFRLLSFFGPNQ 119
Query: 151 TMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIF 210
T+A+QDPSYPAY+D + + G I + C EN FFP+ DI+
Sbjct: 120 TVAIQDPSYPAYLDIARLTGAKE-----------IIALPCLQENAFFPEFPEDTHIDILC 168
Query: 211 FCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVA 269
CSPNNPTG ++QL +V +A ++ +I++D+AY+ +ISD + P+SIFEIP A+ A
Sbjct: 169 LCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCA 228
Query: 270 IETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLAC 329
IE +SFSK GF G+RLGWTVIP+EL ++DG V +D+ R + T FNGAS +Q G+A
Sbjct: 229 IEINSFSKPLGFAGIRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAG 288
Query: 330 LSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFP--GRSSWDVFSE 387
LS E I +Y+EN+D++ + + GF+V+GG++APY+WV+ S D+F
Sbjct: 289 LSILP---QLEAIHYYRENSDLLRKALLATGFEVFGGEHAPYLWVKPTQANISDRDLFDF 345
Query: 388 ILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFK 429
L + H+ TPG GFG G GF+R S+ G R ++L AC+R +
Sbjct: 346 FLREYHIAITPGIGFGRSGSGFVRFSSLGKREDILAACERLQ 387
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} Length = 412 | Back alignment and structure |
|---|
Score = 231 bits (592), Expect = 4e-72
Identities = 97/407 (23%), Positives = 169/407 (41%), Gaps = 47/407 (11%)
Query: 44 YLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYS-GYG 102
Y+F A K A + D +I L +G+ P P I L Q + GY
Sbjct: 20 YVFNITAELKMAARRRGED--IIDLSMGNPDGPTPPHIVEKLCT-----VAQREDTHGYS 72
Query: 103 AEQGEKPLRAAIASTFYKDLGIE---EGDIFVSDGAKCDISRLQIVF---GSNVTMAVQD 156
+G LR AI+ + ++ E + V+ G+K ++ L + G + V +
Sbjct: 73 TSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATLDHGDTI--LVPN 130
Query: 157 PSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA-----RTDIIFF 211
PSYP ++ +VI G ++ + FF +L + ++
Sbjct: 131 PSYPIHIYGAVIAG------------AQVRSVPLVPGIDFFNELERAIRESIPKPRMMIL 178
Query: 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYA-LYISDDNPRSIFEIPGAKEVAI 270
P+NPT + R+V AK ++V+D AYA + SI ++PGAK++A+
Sbjct: 179 GFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAV 238
Query: 271 ETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACL 330
E + SK G R+G+ V EL+ RI G Q +A L
Sbjct: 239 EFFTLSKSYNMAGWRIGFMVGNPELV--------SALARIKSYHDYGTFTPLQVAAIAAL 290
Query: 331 SPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFP----GRSSWDVFS 386
+ V ++ Y++ D++V+ G+ V K + YVW + P S +
Sbjct: 291 E-GDQQCVRDIARQYQQRRDVLVKGLREAGWMVENPKASMYVWAKIPEPYAHLGSLEFAK 349
Query: 387 EILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433
++L+ V +PG GFG G+ +R + +R + +A + K +++
Sbjct: 350 KLLQDAKVSVSPGIGFGDYGDDHVRFALIENRDRLRQAVRGIKAMFR 396
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} Length = 404 | Back alignment and structure |
|---|
Score = 227 bits (581), Expect = 1e-70
Identities = 90/407 (22%), Positives = 151/407 (37%), Gaps = 51/407 (12%)
Query: 44 YLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGY-SGYG 102
F + RK H +I++ +G P P+ I K + YG
Sbjct: 32 SYFGKTMGRKIEHGPL----PLINMAVGIPDGPTPQGIIDHFQK-----ALTIPENQKYG 82
Query: 103 AEQGEKPLRAAIASTFYKDLGIE---EGDIFVSDGAKCDISRLQIVF---GSNVTMAVQD 156
A G++ + AI + + + E ++ + G K + + G V + D
Sbjct: 83 AFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDYV--LLPD 140
Query: 157 PSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV-----ARTDIIFF 211
P Y Y+ ++ GK + + PD S V +T +I+
Sbjct: 141 PGYTDYLAGVLLAD------------GKPVPLN-LEPPHYLPDWSKVDSQIIDKTKLIYL 187
Query: 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIE 271
PNNPTG+ AT+E + K + IV+D AY + D SI K+VAIE
Sbjct: 188 TYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIE 247
Query: 272 TSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLS 331
S SK +G R+G+ V K+++ + + G Q + L+
Sbjct: 248 IYSLSKGYNMSGFRVGFAVGNKDMI--------QALKKYQTHTNAGMFGALQDAAIYALN 299
Query: 332 PEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFP-GRSSWDVFSE-IL 389
+ E +K D K YVW++ P G S F + ++
Sbjct: 300 -HYDDFLEEQSNVFKTRRDRFEAMLAKADLPFVHAKGGIYVWLETPPGYDSEQ-FEQFLV 357
Query: 390 EKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKR---FKHLYK 433
++ ++ PG FG G ++R+S + EA R +LY+
Sbjct: 358 QEKSILVAPGKPFGENGNRYVRISLALDDQKLDEAAIRLTELAYLYE 404
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} Length = 376 | Back alignment and structure |
|---|
Score = 217 bits (554), Expect = 6e-67
Identities = 84/407 (20%), Positives = 148/407 (36%), Gaps = 47/407 (11%)
Query: 37 LGKLQAGYLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQE 96
+ ++ +F + K + +I L IG T P PE ALA+ + +
Sbjct: 1 MSRVPEPSVFLVVDEAKRKARERGVG--LIDLSIGSTDLPPPEAPLKALAE-----ALND 53
Query: 97 GYS-GYGAEQGEKPLRAAIASTFYKDLGIE---EGDIFVSDGAKCDISRLQIVF---GSN 149
+ GY + P A + G+ + G++ ++ L +
Sbjct: 54 PTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLALTEPEDL 113
Query: 150 VTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV-----A 204
+ + + +YP+Y ++ + + + + DL V
Sbjct: 114 L--LLPEVAYPSYFGAARVAS------------LRTFLIPLRED--GLADLKAVPEGVWR 157
Query: 205 RTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPG 264
++ PNNPTGA A + A+ +G +++D+ Y + + S +PG
Sbjct: 158 EAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPG 217
Query: 265 AKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQA 324
AKE +E S SK G RLG+ + +E L R+
Sbjct: 218 AKERVVELFSLSKSYNLAGFRLGFALGSEEAL--------ARLERVKGVIDFNQYAGVLR 269
Query: 325 GGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFP-GRSSWD 383
G+ L + V Y+E + E + + Y+W + P G +
Sbjct: 270 MGVEALK-TPKEVVRGYARVYRERALGMAEALKG-VLSLLPPRATMYLWGRLPEGVDDLE 327
Query: 384 VFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKH 430
F L + V PG GFGPGG+GF+R++ +LEA KR +
Sbjct: 328 -FGLRLVERGVALAPGRGFGPGGKGFVRIALVRPLEELLEAAKRIRE 373
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} Length = 376 | Back alignment and structure |
|---|
Score = 196 bits (500), Expect = 6e-59
Identities = 73/405 (18%), Positives = 141/405 (34%), Gaps = 53/405 (13%)
Query: 44 YLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA 103
Y F + P + LGIG+ P+ I AL + + Y
Sbjct: 7 YPFERLRALLKEIT---PKKRGLDLGIGEPQFETPKFIQDALKNHT------HSLNIYPK 57
Query: 104 EQGEKPLRAAIASTFYK---DLGIEEGDIFVSDGAKCDISRLQIVFGSNV---TMAVQDP 157
E+ LRAA F+K + ++E ++ + G++ + + T+A +P
Sbjct: 58 SAFEESLRAAQRG-FFKRRFKIELKENELISTLGSREVLFNFPSFVLFDYQNPTIAYPNP 116
Query: 158 SYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS--TVARTDIIFFCSPN 215
Y Y ++ + K M T EN F P L+ + D++ SPN
Sbjct: 117 FYQIYEGAAKFIK------------AKSLLMPLTKENDFTPSLNEKELQEVDLVILNSPN 164
Query: 216 NPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEI-----PGAKEVAI 270
NPTG + E+L V+ A + I++ D Y+ + P S+ E A + +
Sbjct: 165 NPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVL 224
Query: 271 ETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACL 330
S SK + G+R G+ LL + + ++N Q A
Sbjct: 225 VIHSLSKRSSAPGLRSGFIAGDSRLL--------EKYKAFRAYLGYTSANAIQKASEAAW 276
Query: 331 SPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSWDVFSEILE 390
+ + Y N + + + + YV++ + + + +
Sbjct: 277 LDD--RHAEFFRNIYANNLKLARK----IFKNTLIYPYSFYVYLPVQ--NGENFAKTLYQ 328
Query: 391 KTHVVTTPGSGFGPG--GEGFIRVSAFGHRGNVLEACKRFKHLYK 433
++T P G G ++R++ + + + + +
Sbjct: 329 NEGIITLPALYLGRNRIGADYVRLALVYDTPLLEKPLEIIETYRE 373
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} Length = 437 | Back alignment and structure |
|---|
Score = 196 bits (500), Expect = 2e-58
Identities = 70/429 (16%), Positives = 130/429 (30%), Gaps = 64/429 (14%)
Query: 47 PEIARR---KAAHMLKYPDAEVISLGIGDTTEP---IPEVITSALAKRSYALSTQEGY-S 99
R ++ K + + +G P P++ + L +EG S
Sbjct: 25 MASIRDLVALVTNLEKATGTKFCRMEMG---VPGLPAPQIGIET-EIQ--KL--REGVAS 76
Query: 100 GYGAEQGEKPLRAAIASTFYKDLGIE--EGDIFVSDGAKCDISRLQIVFGSNV-----TM 152
Y G L+ + + I+ + G+ +V
Sbjct: 77 IYPNLDGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVANRTHKNREYGT 136
Query: 153 AVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA-----RTD 207
DP + I+G K E G + +
Sbjct: 137 LFIDPGFNLNKLQCRILG------------QKFESFDLFEYRGEKLREKLESYLQTGQFC 184
Query: 208 IIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYA------LYISDDNPRSIFE 261
I + +PNNPT T E+L + + A + I++ D AY Y P
Sbjct: 185 SIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPS 244
Query: 262 IPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCF------ 315
+ + I S SK + G R+G +I +L + + + F R+
Sbjct: 245 VANYTDNYILALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSAL 304
Query: 316 ----NGASNISQAGGLACL--SPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNA 369
+GA++ +Q G A L +G + + Y I+ + F GF + K+
Sbjct: 305 YALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDNGFNIVYDKDG 364
Query: 370 P------YVW-VQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVL 422
+ + V + G S + + + T + E ++
Sbjct: 365 NEPLADGFYFTVGYKGMDSSKLIEKFVRYGMCAITLKTTGSKRNEAMRICTSLLPESQFP 424
Query: 423 EACKRFKHL 431
+ KR + L
Sbjct: 425 DLEKRLQML 433
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} Length = 396 | Back alignment and structure |
|---|
Score = 193 bits (493), Expect = 1e-57
Identities = 88/431 (20%), Positives = 158/431 (36%), Gaps = 68/431 (15%)
Query: 34 NGNLGKLQAGYLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALS 93
N L +L+ Y F + E + L IG+ P P+VIT AL
Sbjct: 3 NTLLKQLKP-YPFARLHEAMQGISAP-EGMEAVPLHIGEPKHPTPKVITDALTA------ 54
Query: 94 TQEGYSGYGAEQGEKPLRAAIASTFYKD--LGIE---EGDIFVSDGAK--------CDIS 140
+ Y G LR A A+ + K G+ + +I G++ ++
Sbjct: 55 SLHELEKYPLTAGLPELRQACAN-WLKRRYDGLTVDADNEILPVLGSREALFSFVQTVLN 113
Query: 141 RLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDL 200
+ + +P Y Y ++++ G G+I + C F PD
Sbjct: 114 PVSDGIKP--AIVSPNPFYQIYEGATLLGG------------GEIHFANCP-APSFNPDW 158
Query: 201 STV-----ARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYA-LYISDD 254
++ RT ++F CSPNNP+G+ + + G II D Y+ +Y +
Sbjct: 159 RSISEEVWKRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGN 218
Query: 255 NPRSIFEIP----GAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRI 310
P + +++ + +S SK + G+R G+ ELL K+F
Sbjct: 219 KPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELL--------KNFLLY 270
Query: 311 VCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAP 370
+ S Q +A E + V + Y+E + ++ + F V +
Sbjct: 271 RTYHGSAMSIPVQRASIAAWDDE--QHVIDNRRLYQEKFERVIPILQQV-FDVKLPDASF 327
Query: 371 YVWVQFPGRSSWDVFSEILEKTHVVTTPGSGF------GPGGEGFIRVS--AFGHRGNVL 422
Y+W++ P + +K + PG G GEG++R++ A +
Sbjct: 328 YIWLKVPDGDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVADVAT--CV 385
Query: 423 EACKRFKHLYK 433
+A + LY+
Sbjct: 386 KAAEDIVSLYR 396
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} Length = 391 | Back alignment and structure |
|---|
Score = 190 bits (486), Expect = 1e-56
Identities = 94/396 (23%), Positives = 148/396 (37%), Gaps = 55/396 (13%)
Query: 53 KAAHMLKYPDAEVISLGIGDTTEP---IPEVITSALAKRSYALSTQEGYSGYGAEQGEKP 109
+AA + +I + +G +P P ALAK +L + GY G
Sbjct: 21 EAARRAEEAGRRIIHMEVG---QPGTGAPRGAVEALAK---SL--ETDALGYTVALGLPA 72
Query: 110 LRAAIASTFYKDLGIE--EGDIFVSDGAK--CDISRLQIVF--GSNVTMAVQDPSYPAYV 163
LR IA + + G++ G + ++ G+ ++ +F G V + P YP+Y
Sbjct: 73 LRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLA-FTALFDSGDRVGIG--APGYPSYR 129
Query: 164 DSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV--ARTDIIFFCSPNNPTGAA 221
+G + EN P + + SP NPTG
Sbjct: 130 QILRALG------------LVPVDLPTAPENRLQPVPADFAGLDLAGLMVASPANPTGTM 177
Query: 222 ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGF 281
+ L++ A+ G+ + D Y + + E+ + +SFSKY
Sbjct: 178 LDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALEL---TDECYVINSFSKYFSM 234
Query: 282 TGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEV 341
TG R+GW V+P++ + RI F A + SQ LA L + +
Sbjct: 235 TGWRVGWMVVPEDQ--------VRVVERIAQNMFICAPHASQVAALAALDCD--AELQAN 284
Query: 342 IGFYKENTDIIVETFNSLGFKVY---GGKNAPYVW--VQFPGRSSWDVFSEILEKTHVVT 396
+ YK N +++E GF G A YV+ V S +EILEK V
Sbjct: 285 LDVYKANRKLMLERLPKAGFTRIAPPDG--AFYVYADVSDLTDDSRAFAAEILEKAGVAV 342
Query: 397 TPGSGFGP-GGEGFIRVSAFGHRGNVLEACKRFKHL 431
TPG F P G G +R S ++ E R +
Sbjct: 343 TPGLDFDPERGAGTLRFSYARATADIEEGLDRLEAF 378
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} Length = 370 | Back alignment and structure |
|---|
Score = 182 bits (464), Expect = 9e-54
Identities = 91/393 (23%), Positives = 149/393 (37%), Gaps = 66/393 (16%)
Query: 55 AHMLKYPDAEVISLGIGDTTEP---IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLR 111
A L+ +VI L IG EP P+ I +L +EG + Y +G LR
Sbjct: 21 AQKLESEGKKVIHLEIG---EPDFNTPKPIVDE-GI--KSL--KEGKTHYTDSRGILELR 72
Query: 112 AAIASTFYKDLGIE--EGDIFVSDGAKCDISRLQIVFGSNVTMA---------VQDPSYP 160
I+ + + +I ++ G+ +F + +Q+P YP
Sbjct: 73 EKISELYKDKYKADIIPDNIIITGGSS------LGLF--FALSSIIDDGDEVLIQNPCYP 124
Query: 161 AYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV--ARTDIIFFCSPNNPT 218
Y + +G K + T E L +T I SP+NP
Sbjct: 125 CYKNFIRFLG------------AKPVFCDFTVE-----SLEEALSDKTKAIIINSPSNPL 167
Query: 219 GAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKY 278
G RE + +FA +N I+ D Y + + S E E I + FSK
Sbjct: 168 GEVIDRE----IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKL 223
Query: 279 AGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAV 338
TG R+G+ + E+ + ++ F A ISQ L E + +
Sbjct: 224 YAMTGWRIGYVISNDEI--------IEAILKLQQNLFISAPTISQYAALKAFEKETEREI 275
Query: 339 HEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFP--GRSSWDVFSEILEKTHVVT 396
+ +I + ++++ G++V A YV FP G + ++L++ V
Sbjct: 276 NSMIKEFDRRRRLVLKYVKDFGWEVNNPIGAYYV---FPNIGEDGREFAYKLLKEKFVAL 332
Query: 397 TPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFK 429
TPG GFG G+ +IR+S N+ E +R K
Sbjct: 333 TPGIGFGSKGKNYIRISYANSYENIKEGLERIK 365
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* Length = 389 | Back alignment and structure |
|---|
Score = 181 bits (463), Expect = 3e-53
Identities = 104/393 (26%), Positives = 154/393 (39%), Gaps = 68/393 (17%)
Query: 65 VISLGIGDTTEP---IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKD 121
VISLGIG EP P+ I AK AL +G + YG G LR AIA K
Sbjct: 28 VISLGIG---EPDFDTPQHIKEY-AK--EAL--DKGLTHYGPNIGLLELREAIAEKLKKQ 79
Query: 122 LGIE---EGDIFVSDGAKCDISRLQIVFGSNVTMA---------VQDPSYPAYVDSSVIM 169
GIE + +I V GA Q A + P++ +Y + ++
Sbjct: 80 NGIEADPKTEIMVLLGAN------QAFL--MGLSAFLKDGEEVLIPTPAFVSYAPAVILA 131
Query: 170 GQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA-----RTDIIFFCSPNNPTGAAATR 224
G GK + E+ F ++ + +T + SP NPTGA T+
Sbjct: 132 G------------GKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTK 179
Query: 225 EQLTRLVQFAKDNGSIIVYDSAYALYISDDNP-RSIFEIPGAKEVAIETSSFSK-YAGFT 282
+ L + F ++ I++ D Y +I DD SI + G E I + FSK +A T
Sbjct: 180 KDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFA-MT 238
Query: 283 GVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACL-SPEGFKAVHEV 341
G RLG+ P + + + Q L +KAV E+
Sbjct: 239 GWRLGFVAAPSWI--------IERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEM 290
Query: 342 IGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFP-----GRSSWDVFSEILEKTHVVT 396
Y ++ + N +G K A Y+ FP G +S +L++ V
Sbjct: 291 RKEYDRRRKLVWKRLNEMGLPTVKPKGAFYI---FPRIRDTGLTSKKFSELMLKEARVAV 347
Query: 397 TPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFK 429
PGS FG GEG++R+S + EA R +
Sbjct: 348 VPGSAFGKAGEGYVRISYATAYEKLEEAMDRME 380
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* Length = 375 | Back alignment and structure |
|---|
Score = 180 bits (460), Expect = 5e-53
Identities = 70/384 (18%), Positives = 131/384 (34%), Gaps = 66/384 (17%)
Query: 65 VISLGIG---DTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKD 121
+ SL + + PE L Q YG +G + +++ Y
Sbjct: 29 ISSLTLEELFALSGTNPEDFYKKL---------QGTKLNYGWIEGSPAFKKSVSQ-LYTG 78
Query: 122 LGIEEGDIFVSDGAKCDISRLQIVFGSNVTMA---------VQDPSYPAYVDSSVIMGQT 172
+ E+ I ++GA V + P+Y D +G
Sbjct: 79 VKPEQ--ILQTNGAT------GANL--LVLYSLIEPGDHVISLYPTYQQLYDIPKSLG-- 126
Query: 173 GEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA-----RTDIIFFCSPNNPTGAAATREQL 227
+++ + ENG+ PDL + T +I + NNPTGA R L
Sbjct: 127 ----------AEVDLWQIEEENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYL 176
Query: 228 TRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLG 287
LV+ A + G+ I+ D Y S+ + S I + I +S SK G+R+G
Sbjct: 177 EELVEIASEVGAYILSDEVYR-SFSELDVPS---IIEVYDKGIAVNSLSKTYSLPGIRIG 232
Query: 288 WTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKE 347
W ++ D +D+ I A L+ + + +E
Sbjct: 233 WVAANHQVT--DILRDYRDYTMI------CAGVFDDLVAQLALA-HYQEILERNRHILEE 283
Query: 348 NTDIIVETFNSL-GFKVYGGKNAPYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPG 405
N I+ + +V+ D ++L++ V+ PG+ F
Sbjct: 284 NLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDMPMEDFCLQLLQEHGVLLVPGNRF--E 341
Query: 406 GEGFIRVSAFGHRGNVLEACKRFK 429
+G++R+ + +++ ++
Sbjct: 342 RDGYVRLGFACEQETLIKGLEKLS 365
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 Length = 406 | Back alignment and structure |
|---|
Score = 165 bits (420), Expect = 6e-47
Identities = 96/404 (23%), Positives = 149/404 (36%), Gaps = 63/404 (15%)
Query: 55 AHMLKYPDAEVISLGIGDTTEPI------PEVITSALAKRSYALSTQEGYSGYGAEQGEK 108
A L+ +VI L IG +P+ PE + A K A+ +EG++ YG +G
Sbjct: 30 ARELEKKGIKVIRLNIG---DPVKFDFQPPEHMKEAYCK---AI--KEGHNYYGDSEGLP 81
Query: 109 PLRAAIASTFYKD--LGIEEGDIFVSDGAKCDISRLQIVFGSNVTMA---------VQDP 157
LR AI + + I D+ V+ + + + A V P
Sbjct: 82 ELRKAIVEREKRKNGVDITPDDVRVTAAVT------EALQ--LIFGALLDPGDEILVPGP 133
Query: 158 SYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA-----RTDIIFFC 212
SYP Y G GK R E + PD+ + RT I
Sbjct: 134 SYPPYTGLVKFYG------------GKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVI 181
Query: 213 SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIET 272
+PNNPTGA ++ L ++ A + ++ D Y L + S + I
Sbjct: 182 NPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTK-DVPVIVM 240
Query: 273 SSFSK-YAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLS 331
+ SK Y TG RLG+ A D + C + +Q +A L+
Sbjct: 241 NGLSKVYF-ATGWRLGYMYFVDPENKLSEVREAIDRLARIRLC---PNTPAQFAAIAGLT 296
Query: 332 -PEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAPYVWV---QFPGRSSWDVFS 386
P + + E + KE D I + N + G + A Y++ P ++ +
Sbjct: 297 GPMDY--LKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKIEVGPWKNDKEFVL 354
Query: 387 EILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKH 430
++L HV+ GSGFG G G R + EA RF+
Sbjct: 355 DVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDRFEK 398
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} Length = 407 | Back alignment and structure |
|---|
Score = 163 bits (416), Expect = 3e-46
Identities = 63/421 (14%), Positives = 118/421 (28%), Gaps = 79/421 (18%)
Query: 47 PEIARRKAAHMLKYPDAEVISLGIG--DTTEPIPEVITSALAKRSYALSTQEGYSGYGAE 104
+ G D EP P + G Y
Sbjct: 24 SAAGLEALIRGAPIEG-RPVDFSHGDVDAHEPTPGAFDLF-SAGV----QSGGVQAYTEY 77
Query: 105 QGEKPLRAAIASTFYKDLGIE---EGDIFVSDGAKCDISRLQIVFGSNVTMA-------- 153
+G+ +R +A G + ++ G + +F A
Sbjct: 78 RGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQ------GALF--LAVAATVARGDKV 129
Query: 154 -VQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKI----EYMRCTAENGFFPDLSTVA---- 204
+ P Y A G++ E DL+ +
Sbjct: 130 AIVQPDYFANRKLVEFFE------------GEMVPVQLDYVSADETRAGLDLTGLEEAFK 177
Query: 205 -RTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNP-RSIFEI 262
+ F +PNNP G + E++ ++ A G+ ++ D Y+ +
Sbjct: 178 AGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAE 237
Query: 263 PGA-KEVAIETSSFSK-YAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRI---VCTCFNG 317
E + SK + +G RLG + + ++ V
Sbjct: 238 AAVDAENVVTIMGPSKTES-LSGYRLGVAFGSRAI--------IARMEKLQAIVSLR--- 285
Query: 318 ASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAPYVWVQF 376
A+ SQA E + + I ++ D ++ G + Y+ F
Sbjct: 286 AAGYSQAVLRGWFD-EAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYL---F 341
Query: 377 P-----GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS-AFGHRGNVLEACKRFKH 430
P + + + + VV TPG+ F P +R++ + H + A +R
Sbjct: 342 PRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHE-AAVAAARRIVT 400
Query: 431 L 431
L
Sbjct: 401 L 401
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} Length = 398 | Back alignment and structure |
|---|
Score = 161 bits (410), Expect = 1e-45
Identities = 78/415 (18%), Positives = 138/415 (33%), Gaps = 68/415 (16%)
Query: 46 FPEIARRKAAHMLKYPDAEVISLGIGDTTEP---IPEVITSALAKRSYALSTQEGYSGYG 102
E +++A V IG P P+++ K GY
Sbjct: 21 LFEYGKKRA---AIVGKENVYDFSIG---NPSIPAPQIVNDT-IKELVTDYDSVALHGYT 73
Query: 103 AEQGEKPLRAAIASTFYKDLGIE--EGDIFVSDGAKCDISRLQIVFGSNVTMA------- 153
+ QG+ RAAIA G +++++ GA + A
Sbjct: 74 SAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAA------ASLS--ICFRALTSDAYD 125
Query: 154 ---VQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA-----R 205
P +P Y G ++ + E+ F D +
Sbjct: 126 EFITIAPYFPEYKVFVNAAG------------ARLVEVPADTEH-FQIDFDALEERINAH 172
Query: 206 TDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGS------IIVYDSAYALYISDDNPRSI 259
T + SPNNP+G + E + +L + I+ D Y + D
Sbjct: 173 TRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPF 232
Query: 260 FEIPGAKEVAIETSSFSK-YAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGA 318
+ + + S+SK + G R+G+ ++P E+ A + A
Sbjct: 233 --VTKYYDNTLVCYSYSKSLS-LPGERIGYVLVPDEVYDKAEL-YAAVCGAGRALGYVCA 288
Query: 319 SNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPG 378
++ Q + C I YKEN D++ E +G+ + A Y++V+
Sbjct: 289 PSLFQKMIVKCQ------GATGDINAYKENRDLLYEGLTRIGYHCFKPDGAFYMFVKALE 342
Query: 379 RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433
S F E ++ V+ GF G G++R+S R + + F+ +YK
Sbjct: 343 DDSNA-FCEKAKEEDVLIVAADGF--GCPGWVRISYCVDREMIKHSMPAFEKIYK 394
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 Length = 416 | Back alignment and structure |
|---|
Score = 156 bits (397), Expect = 1e-43
Identities = 66/408 (16%), Positives = 132/408 (32%), Gaps = 74/408 (18%)
Query: 64 EVISLGIGD----TTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFY 119
+I L +GD L + + +GY G R A+A+ +
Sbjct: 34 PIIKLSVGDPTLDKNLLTSAAQIKKLKE----AIDSQECNGYFPTVGSPEAREAVATWWR 89
Query: 120 K--------DLGIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQD---------PSYPAY 162
I + ++ + G I A+ D P +P Y
Sbjct: 90 NSFVHKEELKSTIVKDNVVLCSGGSHGIL--------MAITAICDAGDYALVPQPGFPHY 141
Query: 163 VDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA-----RTDIIFFCSPNNP 217
G + + C EN + DL + +T ++ +P+NP
Sbjct: 142 ETVCKAYG------------IGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNP 189
Query: 218 TGAAATREQLTRLVQFAKDNGSIIVYDSAYA--LYISDDNPR---SIFEIPGAKEVAIET 272
G+ +R+ + +V+ A++ + D YA ++ D S+ + +
Sbjct: 190 CGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPR-VIL 248
Query: 273 SSFSK-YAGFTGVRLGWTVIPKELLFSDGF--PVAKDFNRIVCTCFNGASNISQAGGLAC 329
+K G RLGW + F + + + + QA
Sbjct: 249 GGTAKNLV-VPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCG-----PCTVVQAALGEA 302
Query: 330 LSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAPYVWV-----QFPG-RSSW 382
L + + +++ +E+ + G + A Y+ ++ ++
Sbjct: 303 LLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYRDIKTDV 362
Query: 383 DVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKH 430
+ F ++LE+ +V PG+ F GF R++ EA +R K
Sbjct: 363 EFFEKLLEEENVQVLPGTIF--HAPGFTRLTTTRPVEVYREAVERIKA 408
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 Length = 409 | Back alignment and structure |
|---|
Score = 155 bits (395), Expect = 2e-43
Identities = 69/404 (17%), Positives = 127/404 (31%), Gaps = 71/404 (17%)
Query: 55 AHMLKYPDAEVISLGIGDTTEP---IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLR 111
A M K + L IG +P PEV + Y G LR
Sbjct: 35 AEMAKKRGVRIHHLNIG---QPDLKTPEVFFER------IYENKPEVVYYSHSAGIWELR 85
Query: 112 AAIASTFYKDLGIE--EGDIFVSDGAKCDISRLQIVFGSNVTMAVQD---------PSYP 160
A AS + + ++ ++ V++G + + + + P Y
Sbjct: 86 EAFASYYKRRQRVDVKPENVLVTNGGS------EAIL--FSFAVIANPGDEILVLEPFYA 137
Query: 161 AYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGF-----FPDLSTVARTDIIFFCSPN 215
Y + I G K+ + E GF RT I +P
Sbjct: 138 NYNAFAKIAG------------VKLIPVTRRMEEGFAIPQNLESFIN-ERTKGIVLSNPC 184
Query: 216 NPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSF 275
NPTG ++++ LV+ A+ +G ++ D Y+ + S I + + S
Sbjct: 185 NPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIE--SDKVVVIDSV 242
Query: 276 SK-YAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEG 334
SK ++ G R+G + E L + + Q G + L+
Sbjct: 243 SKKFS-ACGARVGCLITRNEEL--------ISHAMKLAQGRLAPPLLEQIGSVGLLN-LD 292
Query: 335 FKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTH 393
V Y+E + +++ + A Y+ + P + + +L +
Sbjct: 293 DSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAELPVEDAEEFARWMLTDFN 352
Query: 394 -----VVTTPGSGFGPG---GEGFIRVSAFGHRGNVLEACKRFK 429
+ P GF G+ IR++ + + A
Sbjct: 353 MDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLM 396
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 Length = 389 | Back alignment and structure |
|---|
Score = 154 bits (392), Expect = 5e-43
Identities = 95/400 (23%), Positives = 151/400 (37%), Gaps = 70/400 (17%)
Query: 55 AHMLKYPDAEVISLGIGDTTEP---IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLR 111
A L +VI+L G EP PE + A R Q+G Y +G LR
Sbjct: 33 AKALIKKGEDVINLTAG---EPDFPTPEPVVEE-AVRF----LQKGEVKYTDPRGIYELR 84
Query: 112 AAIASTFYKDLGIE--EGDIFVSDGAKCDISRLQIVFGSNVTMAVQDP------------ 157
IA + + + V++GAK Q +F N MA+ DP
Sbjct: 85 EGIAKRIGERYKKDISPDQVVVTNGAK------QALF--NAFMALLDPGDEVIVFSPVWV 136
Query: 158 SYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA-----RTDIIFFC 212
SY + A G + + F P L V +T +
Sbjct: 137 SYIPQI-------------ILAG--GTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLIN 181
Query: 213 SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIET 272
SPNNPTG RE L LV+ AK I+ D Y + D SI ++ + +
Sbjct: 182 SPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYI 241
Query: 273 SSFSK-YAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLS 331
+ FSK ++ TG R+G+ + +++ A ++I + + ++Q L L
Sbjct: 242 NGFSKSHS-MTGWRVGYLISSEKV--------ATAVSKIQSHTTSCINTVAQYAALKALE 292
Query: 332 PEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSWDVFSEILEK 391
+ ++ +KE + +VE +G K + A Y++ + G +LE+
Sbjct: 293 VD----NSYMVQTFKERKNFVVERLKKMGVKFVEPEGAFYLFFKVRG-DDVKFCERLLEE 347
Query: 392 THVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHL 431
V PGS F GF+R+S + EA R +
Sbjct: 348 KKVALVPGSAF--LKPGFVRLSFATSIERLTEALDRIEDF 385
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* Length = 427 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 6e-42
Identities = 77/403 (19%), Positives = 135/403 (33%), Gaps = 56/403 (13%)
Query: 55 AHMLKYPDAEVISLGIGDTTE----PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPL 110
+ P+ +ISL IGD T P +T A+ AL + + Y+GY G
Sbjct: 46 MKVKPNPNKTMISLSIGDPTVFGNLPTDPEVTQAMKD---ALDSGK-YNGYAPSIGFLSS 101
Query: 111 RAAIASTFYKD-LGIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQD---------PSYP 160
R IAS ++ +E D+ ++ G I + + P +
Sbjct: 102 REEIASYYHCPEAPLEAKDVILTSGCSQAID--------LCLAVLANPGQNILVPRPGFS 153
Query: 161 AYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV-----ARTDIIFFCSPN 215
Y + MG +++ E + DL + +T + +P+
Sbjct: 154 LYKTLAESMG------------IEVKLYNLLPEKSWEIDLKQLEYLIDEKTACLIVNNPS 201
Query: 216 NPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSF 275
NP G+ ++ L +++ A I+ D Y + D +
Sbjct: 202 NPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGL 261
Query: 276 SK-YAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEG 334
+K + G RLGW +I + ++ G I Q + L
Sbjct: 262 AKRWL-VPGWRLGWILIHDRRDIFGNE-IRDGLVKL-SQRILGPCTIVQGALKSILCRTP 318
Query: 335 FKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAPYVWV-----QFPG-RSSWDVFSE 387
+ H + F K N D+ ++ G + A Y+ V FP + +
Sbjct: 319 GEFYHNTLSFLKSNADLCYGALAAIPGLRPVRPSGAMYLMVGIEMEHFPEFENDVEFTER 378
Query: 388 ILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKH 430
++ + V P + F FIRV +LEAC R +
Sbjct: 379 LVAEQSVHCLPATCF--EYPNFIRVVITVPEVMMLEACSRIQE 419
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* Length = 385 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 1e-40
Identities = 97/393 (24%), Positives = 149/393 (37%), Gaps = 74/393 (18%)
Query: 65 VISLGIGDTTEP---IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKD 121
+++L G EP PE + A A+R AL +G + Y G LR A+A F ++
Sbjct: 33 LVALTAG---EPDFDTPEHVKEA-ARR--AL--AQGKTKYAPPAGIPELREALAEKFRRE 84
Query: 122 LGIE--EGDIFVSDGAKCDISRLQIVFGSNVTMAVQDP------------SYPAYVDSSV 167
G+ + V+ G Q +F N+ A+ DP SYP V
Sbjct: 85 NGLSVTPEETIVTVGGS------QALF--NLFQAILDPGDEVIVLSPYWVSYPEMV---- 132
Query: 168 IMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA-----RTDIIFFCSPNNPTGAAA 222
+ A G + + E GF PD V RT + SPNNPTGA
Sbjct: 133 ---------RFAG--GVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVY 181
Query: 223 TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSK-YAGF 281
+E L L + A ++ +V D Y + + S + A E + + +K +A
Sbjct: 182 PKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRV--APEHTLTVNGAAKAFA-M 238
Query: 282 TGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLS--PEGFKAVH 339
TG R+G+ PKE+ K + I+Q L L+ V
Sbjct: 239 TGWRIGYACGPKEV--------IKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVE 290
Query: 340 EVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWV---QFPGRSSWDVFSEILEKTHVVT 396
Y+ D+++E +LG K A YV + +E L + V
Sbjct: 291 MAREAYRRRRDLLLEGLTALGLKAVRPSGAFYVLMDTSPIAPDE--VRAAERLLEAGVAV 348
Query: 397 TPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFK 429
PG+ F G +R+S N+ +A +RF
Sbjct: 349 VPGTDFAA--FGHVRLSYATSEENLRKALERFA 379
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} Length = 444 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 5e-40
Identities = 67/404 (16%), Positives = 119/404 (29%), Gaps = 72/404 (17%)
Query: 64 EVISLGIG--DTTEPIPEVITSALAK-------RSYALSTQEGYSGYGAEQGEKPLRAAI 114
V LG G + + E+ S + Y QG+ A+
Sbjct: 33 PVNMLGGGNPAKIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDAL 92
Query: 115 ASTFYKDLGIE--EGDIFVSDGAK----------------CDISRLQIVFGSNVTMAVQD 156
F + +I +++G++ + +
Sbjct: 93 VGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLT 152
Query: 157 PSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA-----------R 205
P Y Y D V I+ + E GFF R
Sbjct: 153 PEYIGYSDVHVEGQHFAAVLP------HIDEVTHDGEEGFFKYRVDFEALENLPALKEGR 206
Query: 206 TDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGA 265
I P NPTG T E++ L + AK ++ D+AY + +
Sbjct: 207 IGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAH--LNW 264
Query: 266 KEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAG 325
I S SK G+R G V +++ N +V + A
Sbjct: 265 DNNTILCFSLSKIGL-PGMRTGIIVADAKVI-----EAVSAMNAVVNLA---PTRFGAAI 315
Query: 326 GLACLSPEGFKAVH--EVIGFYKENTDIIVET----FNSLGFKVYGGKNAPYVWVQFP-- 377
++ + K + E+ FY++ + V+ ++ + A ++W+ F
Sbjct: 316 ATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDL 375
Query: 378 GRSSWDVFSEILEKTHVVTTPGSGFGPG--------GEGFIRVS 413
S+ D++ + K + P F PG IR+S
Sbjct: 376 PISTLDLYERLKAK-GTLIVPSEYFFPGVDVSDYQHAHECIRMS 418
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* Length = 435 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 2e-38
Identities = 71/415 (17%), Positives = 126/415 (30%), Gaps = 78/415 (18%)
Query: 65 VISLGIG------DTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTF 118
+I +G+ D E A A + S + + G + A+
Sbjct: 40 IIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFM 99
Query: 119 YKDLG----IEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQD---------PSYPAYVDS 165
+ G + + ++ GA + D P YP +
Sbjct: 100 AEIRGNKVTFDPNHLVLTAGATSANE--------TFIFCLADPGEAVLIPTPYYPGFDRD 151
Query: 166 SVIMGQTGEFQKDAEKYGKIEYMRCTAENGF-----------FPDLSTVARTDIIFFCSP 214
+I + CT+ NGF R + +P
Sbjct: 152 LKWRTG-----------VEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNP 200
Query: 215 NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNP-RSIFEI---------PG 264
+NP G TR +L L+ F +D G ++ D Y+ S+ E+
Sbjct: 201 SNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSE 260
Query: 265 AKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQA 324
+ S SK G G R+G ++ V ++ + F S+ +Q
Sbjct: 261 VWQRVHVVYSLSKDLGLPGFRVGAIYSNDDM-------VVAAATKM--SSFGLVSSQTQH 311
Query: 325 GGLACLSPEGF--KAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFP----- 377
A LS + + E K+ +V G G + WV
Sbjct: 312 LLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRS 371
Query: 378 --GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS-AFGHRGNVLEACKRFK 429
+ +++ +I+ + H+ +PGS G+ RV A + A +R K
Sbjct: 372 NTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLK 426
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 Length = 388 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 2e-37
Identities = 104/394 (26%), Positives = 163/394 (41%), Gaps = 73/394 (18%)
Query: 65 VISLGIGDTTEP---IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKD 121
V S G EP P+ I A AK AL ++G + YG GE LR AIA +D
Sbjct: 32 VCSFSAG---EPDFNTPKHIVEA-AKA--AL--EQGKTRYGPAAGEPRLREAIAQKLQRD 83
Query: 122 LGIE--EGDIFVSDGAKCDISRLQIVFGSNVTMAVQDP------------SYPAYVDSSV 167
G+ +I V++G K Q +F N+ +A+ +P SYP V
Sbjct: 84 NGLCYGADNILVTNGGK------QSIF--NLMLAMIEPGDEVIIPAPFWVSYPEMV---- 131
Query: 168 IMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA-----RTDIIFFCSPNNPTGAAA 222
K AE G + T E F + +T ++ F +P+NPTG
Sbjct: 132 ---------KLAE--GTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVY 180
Query: 223 TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNP-RSIFEI-PGAKEVAIETSSFSK-YA 279
T +++ + Q A + G ++ D Y + DD SI P A E ++ S F+K YA
Sbjct: 181 TPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYA 240
Query: 280 GFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLS-PEGFKAV 338
TG R+G+ P L K +I + +Q G +A + V
Sbjct: 241 -MTGWRVGFLAGPVPL--------VKAATKIQGHSTSNVCTFAQYGAIAAYENSQDC--V 289
Query: 339 HEVIGFYKENTDIIVETFNSL-GFKVYGGKNAPYVWVQFPG--RSSWDVFSEILEKTHVV 395
E++ + E +++ N++ G + A Y++ RSS D SE+L++ V
Sbjct: 290 QEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIAKTGRSSLDFCSELLDQHQVA 349
Query: 396 TTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFK 429
T PG+ FG + IR+S + +R +
Sbjct: 350 TVPGAAFGA--DDCIRLSYATDLDTIKRGMERLE 381
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* Length = 428 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 2e-36
Identities = 73/416 (17%), Positives = 126/416 (30%), Gaps = 81/416 (19%)
Query: 65 VISLGIGDTTEPI-------PEVIT-SALAKRSYALSTQEGYSGYGAEQGEKPLRAAIAS 116
VI +G+ E + + S + + + + + G R AIA
Sbjct: 38 VIQMGLA---ENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAK 94
Query: 117 TFYKDLG----IEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQD---------PSYPAYV 163
K G + + ++ GA + + D P YPA+
Sbjct: 95 FMEKTRGGRVRFDPERVVMAGGATGANE--------TIIFCLADPGDAFLVPSPYYPAFN 146
Query: 164 DSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGF-----------FPDLSTVARTDIIFFC 212
++ + C + N F + + +
Sbjct: 147 RDLRWRTGV-----------QLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILT 195
Query: 213 SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNP-RSIFEIPGAKEVAIE 271
+P+NP G ++ L ++ F + +V D YA + D SI EI +E+
Sbjct: 196 NPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYC 255
Query: 272 T-------SSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQA 324
S SK G G R+G ++S V ++ + F S +Q
Sbjct: 256 NKDLVHIVYSLSKDMGLPGFRVGI-------IYSFNDDVVNCARKM--SSFGLVSTQTQY 306
Query: 325 GGLACLSPEGF--KAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFP----- 377
A LS E F + E + +G K + W+
Sbjct: 307 FLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRE 366
Query: 378 --GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS-AFGHRGNVLEACKRFKH 430
S ++ I+ + +PGS F G+ RV A G V A R +
Sbjct: 367 STFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIRR 422
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} Length = 417 | Back alignment and structure |
|---|
Score = 137 bits (346), Expect = 2e-36
Identities = 62/378 (16%), Positives = 121/378 (32%), Gaps = 46/378 (12%)
Query: 64 EVISLGIG--DTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKD 121
I LG G + + + L + + Y QG+ L A+A +
Sbjct: 32 GAIMLGGGNPAHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRET 91
Query: 122 LGIE--EGDIFVSDGAK--CD-ISRLQIVFGSN----VTMAVQDPSYPAYVDSSVIMGQT 172
LG + +I +++G++ + L ++ + P Y Y DS +
Sbjct: 92 LGWDIEPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSG---LED 148
Query: 173 GEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFF---CSPNNPTGAAATREQLTR 229
F + + + D + + P NPTG T E+L +
Sbjct: 149 DLFVSARPNIELLP----EGQFKYHVDFEHLHIGEETGMICVSRPTNPTGNVITDEELMK 204
Query: 230 LVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWT 289
L + A + +V D+AY + P I S SK G R G
Sbjct: 205 LDRLANQHNIPLVIDNAYGVPFPGIIFSEAR--PLWNPNIILCMSLSKLGL-PGSRCGII 261
Query: 290 VIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHE--VIGFYKE 347
+ + + + N I+ + A + + E + FY +
Sbjct: 262 IANDKTI-----TAIANMNGIISLA---PGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQ 313
Query: 348 NTDIIVET----FNSLGFKVYGGKNAPYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGF 402
+ + ++ + A ++W+ F + ++ + L+ V+ PG F
Sbjct: 314 RVQQTIAIIRRYLSEERCLIHKPEGAIFLWLWFKDLPITTELLYQRLKARGVLMVPGHYF 373
Query: 403 GPG-------GEGFIRVS 413
PG +R++
Sbjct: 374 FPGLDKPWPHTHQCMRMN 391
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} Length = 500 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 9e-36
Identities = 92/447 (20%), Positives = 142/447 (31%), Gaps = 79/447 (17%)
Query: 36 NLGKLQAGYLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQ 95
N+G Q+ P R+ + +PD ++ T + AK+ A+
Sbjct: 70 NIGNPQSLGQQPVTFFREVLALCDHPD--LLQREEIKTLFSADSISR---AKQILAMIPG 124
Query: 96 EGYSGYGAEQGEKPLRAAIASTFYKDLGIEEG--DIFVSDGAK--CDISRLQIVFGSNVT 151
Y QG LR AIAS G DIF++DGA + ++
Sbjct: 125 RATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDG 184
Query: 152 MAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV-------- 203
+ V P YP Y S + G + Y G+ + S V
Sbjct: 185 ILVPIPQYPLYSASIALHGGA-----------LVPY-YLNESTGWGLETSDVKKQLEDAR 232
Query: 204 ---ARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN----- 255
+ +P NPTG E +V+F K+ G +++ D Y I DN
Sbjct: 233 SRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHS 292
Query: 256 PRSIFEIPGAKEVAIETSSF---SK-YAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIV 311
+ I G E + S+ SK Y G G R G+ I ++ +
Sbjct: 293 FKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFS------APVREQIYKI 346
Query: 312 CTCFNGASNISQAGGLACLSP---------EGFKAVHEVIGFYKENTDIIVETFNSL-GF 361
+ ++ Q ++P ++ + FN L G
Sbjct: 347 ASVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGI 406
Query: 362 KVYGGKNAPYVWVQFP---------------GRSSWDVF--SEILEKTHVVTTPGSGFGP 404
+ A YV FP ++ D F +LE T +V PGSGFG
Sbjct: 407 TCNEAEGAMYV---FPQICLPQKAIEAAKAANKAP-DAFYALRLLESTGIVVVPGSGFGQ 462
Query: 405 -GGEGFIRVSAFGHRGNVLEACKRFKH 430
G R + + RF
Sbjct: 463 VPGTWHFRCTILPQEDKIPAVISRFTV 489
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 Length = 386 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 5e-35
Identities = 77/386 (19%), Positives = 132/386 (34%), Gaps = 50/386 (12%)
Query: 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGI 124
I+L G P + LA +G + Y G + LR AIA + G
Sbjct: 32 AINLSQGFPDFDGPRYLQERLAH-----HVAQGANQYAPMTGVQALREAIAQKTERLYGY 86
Query: 125 E---EGDIFVSDGAK--CDISRLQIVF-GSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKD 178
+ + DI V+ GA + +V G V DPSY +Y + + G
Sbjct: 87 QPDADSDITVTAGATEALYAAITALVRNGDEV--ICFDPSYDSYAPAIALSG-------- 136
Query: 179 AEKYGKIEYMRCTAENGFFPDLSTVA-----RTDIIFFCSPNNPTGAAATREQLTRLVQF 233
G ++ M + F D A RT ++ +P+NP+ + L Q
Sbjct: 137 ----GIVKRMALQPPH-FRVDWQEFAALLSERTRLVILNTPHNPSATVWQQADFAALWQA 191
Query: 234 AKDNGSIIVYDSAYALYISDDNP-RSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIP 292
+ ++ D Y S+ P +E A+ SSF K TG ++G+ V P
Sbjct: 192 IAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAP 251
Query: 293 KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACL-SPEGFKAVHEVIGFYKENTDI 351
+ + + +Q L + + FY++ DI
Sbjct: 252 APIS--AEIRKVHQYL-TFS-----VNTPAQLALADMLRAEPEH--YLALPDFYRQKRDI 301
Query: 352 IVETFNSLGFKVYGGKNAPYVWV---QFPGRSSWDVFSEILEKTHVVTTPGSGFG--PGG 406
+V N ++ + ++ V + + ++ V P S F P
Sbjct: 302 LVNALNESRLEILPCEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFP 361
Query: 407 EGFIRVSAFGHRGNVL-EACKRFKHL 431
IR+ F + + L A +R + L
Sbjct: 362 HKLIRL-CFAKKESTLLAAAERLRQL 386
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} Length = 411 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 6e-34
Identities = 86/398 (21%), Positives = 142/398 (35%), Gaps = 59/398 (14%)
Query: 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGI 124
++LG G E P + A + G + Y G PLR AIA+ + G+
Sbjct: 27 AVNLGQGFPDEDGPPKMLQAAQD-----AIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGV 81
Query: 125 E---EGDIFVSDGAK--CDISRLQIVF-GSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKD 178
+ E ++ V+ GA + L +V GS V + +P Y +Y + G
Sbjct: 82 DYDPETEVLVTVGATEAIAAAVLGLVEPGSEV--LLIEPFYDSYSPVVAMAG-------- 131
Query: 179 AEKYGKIEYMRCTAEN-GFFPDLSTVA-----RTDIIFFCSPNNPTGAAATREQLTRLVQ 232
+ + GF D + RT + SP+NPTGA + +L + +
Sbjct: 132 ----AHRVTVPLVPDGRGFALDADALRRAVTPRTRALIINSPHNPTGAVLSATELAAIAE 187
Query: 233 FAKDNGSIIVYDSAYALYISDDNP-RSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVI 291
A +++ D Y + D + G E I SS +K TG ++GW
Sbjct: 188 IAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWACG 247
Query: 292 PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACL-SPEGFKAVHEVIGFYKENTD 350
P EL+ G AK + + G + Q L + + + V + + D
Sbjct: 248 PAELI--AGVRAAKQY-----LSYVGGAP-FQPAVALALDTEDAW--VAALRNSLRARRD 297
Query: 351 IIVETFNSLGFKVYGGKNAPYVWV---QFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGE 407
+ +GF V+ ++ S + + + EK V P S F
Sbjct: 298 RLAAGLTEIGFAVHDSYGTYFLCADPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAA 357
Query: 408 G-----------FIRVSAFGHRGNVL-EACKRFKHLYK 433
G +R F R + L EA +R L +
Sbjct: 358 GQASQQADVWNHLVRF-TFCKRDDTLDEAIRRLSVLAE 394
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* Length = 427 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 1e-32
Identities = 61/412 (14%), Positives = 102/412 (24%), Gaps = 93/412 (22%)
Query: 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEG--YSGYGAEQGEKPLRAAIASTFYKDL 122
+ GD A + + L I ++ +
Sbjct: 58 SADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKE-LHEVV 116
Query: 123 GIEEGD---IFVSDGAKCDISRLQIVFGSNVTMA---------VQDPSYPAYVDSSVIMG 170
G I G I L I N+T P YP + + +
Sbjct: 117 GNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFD 176
Query: 171 QTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA-----RTDIIFFCSPNNPTGAAATRE 225
+ + + I SPNNP G
Sbjct: 177 --------------------KKGYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGL----- 211
Query: 226 QLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVR 285
++ A G +YD Y Y P I + I + SK+ G +G R
Sbjct: 212 -----LRHAVIKGCKSIYDMVY--YWPHYTP-----IKYKADEDILLFTMSKFTGHSGSR 259
Query: 286 LGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFY 345
GW +I E V + + G +Q L L E V G
Sbjct: 260 FGWALIKDE-------SVYNNLLNYMTKNTEGTPRETQLRSLKVLK-EVVAMVKTQKGTM 311
Query: 346 KENTDIIVETFNS--------------------------LGFKVYGGKNAPYVWVQFPGR 379
++ + F+ + Y WV+
Sbjct: 312 RDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE 371
Query: 380 SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHL 431
D + + + + T G GF ++R+S + + + K +
Sbjct: 372 EDKDCY-QTFQNGRINTQNGVGFEASS-RYVRLSLIKTQDDFDQLMYYLKDM 421
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* Length = 381 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 1e-32
Identities = 80/387 (20%), Positives = 137/387 (35%), Gaps = 66/387 (17%)
Query: 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGI 124
++LG G + P P + A+ AL Y G LR A+A ++ +
Sbjct: 27 AVNLGQGFPSNPPPPFLLEAVR---RAL---GRQDQYAPPAGLPALREALA----EEFAV 76
Query: 125 EEGDIFVSDGAKCDI-SRLQ---------IVFGSNVTMAVQDPSYPAYVDSSVIMGQTGE 174
E + V+ GA + LQ +V +P + Y+ + + G
Sbjct: 77 EPESVVVTSGATEALYVLLQSLVGPGDEVVVL---------EPFFDVYLPDAFLAG---- 123
Query: 175 FQKDAEKYGKIEYMRCT-AENGFFPDLSTVA-----RTDIIFFCSPNNPTGAAATREQLT 228
K +R GF DLS + RT + +P NPTG +L
Sbjct: 124 --------AKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELE 175
Query: 229 RLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGW 288
+ + A+ + ++ D Y + PR + A E S K TG R+GW
Sbjct: 176 AIARLARAHDLFLISDEVYDELYYGERPRRL--REFAPERTFTVGSAGKRLEATGYRVGW 233
Query: 289 TVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACL-SPEGFKAVHEVIGFYKE 347
V PKE + + + T F+ + QAG L + Y+
Sbjct: 234 IVGPKEFM--PRLAGMRQW-----TSFSAPTP-LQAGVAEALKLARREGFYEALREGYRR 285
Query: 348 NTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGF--GPG 405
D++ ++G +VY + ++ + PG ++ ++E+ V P S F
Sbjct: 286 RRDLLAGGLRAMGLRVYVPEGTYFLMAELPGWDAF----RLVEEARVALIPASAFYLEDP 341
Query: 406 GEGFIRVSAFGHRGNVL-EACKRFKHL 431
+ R + F L A +R +
Sbjct: 342 PKDLFRFA-FCKTEEELHLALERLGRV 367
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} Length = 498 | Back alignment and structure |
|---|
Score = 124 bits (312), Expect = 3e-31
Identities = 78/426 (18%), Positives = 146/426 (34%), Gaps = 82/426 (19%)
Query: 64 EVISLGIGDTTEPIPEVITSAL--AKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKD 121
+V++L P A A+R Y A QG +R +A+ +
Sbjct: 86 QVMALCTYPNLLDSPSFPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRR 145
Query: 122 LGIEE---GDIFVSDGAKCDIS---RLQIVFGSNVTMAV--QDPSYPAYVDSSVIMGQTG 173
G +I+++ GA IS ++ + G V P YP Y +
Sbjct: 146 DGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVISELDAI- 204
Query: 174 EFQKDAEKYGKIEYMRCTAENGFFPDLSTVAR----------TDIIFFCSPNNPTGAAAT 223
++ Y EN + +++ + R ++ +P NPTG +
Sbjct: 205 ----------QVNY-YLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQS 253
Query: 224 REQLTRLVQFAKDNGSIIVYDSAYA--LYISDDNPRSIFEI------PGAKEVAIET-SS 274
R+ + ++ FA + ++ D Y +Y D S ++ + V + + S
Sbjct: 254 RKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHS 313
Query: 275 FSK-YAGFTGVRLGWTVIPKELLFSDGFP--VAKDFNRI--VCTCFNGASNISQAGGLAC 329
SK Y G G R G+ + + ++ V C +S +
Sbjct: 314 TSKGYMGECGYRGGYMEVI-------NLHPEIKGQLVKLLSVRLC----PPVSGQAAMDI 362
Query: 330 L---------SPEGFKA-VHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAPYVW--VQF 376
+ S E F V+G + + + FN + G + A Y + +
Sbjct: 363 VVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMYAFPRIFI 422
Query: 377 PGRSSW---------DVF--SEILEKTHVVTTPGSGFG-PGGEGFIRVSAFGHRGNVLEA 424
P ++ D+F ++LE+T + PGSGFG G R++ +
Sbjct: 423 PAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVEKLKTV 482
Query: 425 CKRFKH 430
++ K
Sbjct: 483 LQKVKD 488
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* Length = 429 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 4e-30
Identities = 71/420 (16%), Positives = 128/420 (30%), Gaps = 86/420 (20%)
Query: 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGI 124
++LG G P+ +ALA A S + Y G L A++ + + +
Sbjct: 39 PLNLGQGFPDYHAPKYALNALAA--AANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDR 96
Query: 125 E---EGDIFVSDGAKCDI-SRLQ---------IVFGSNVTMAVQDPSYPAYVDSSVIMGQ 171
++ V+ GA + + +Q I+ +P + Y G
Sbjct: 97 TINPMTEVLVTVGAYEALYATIQGHVDEGDEVIII---------EPFFDCYEPMVKAAG- 146
Query: 172 TGEFQKDAEKYGKIEY--------MRCTAENGFFPDLSTVA-----RTDIIFFCSPNNPT 218
G + + + D + + +T +I +P+NP
Sbjct: 147 -----------GIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPL 195
Query: 219 GAAATREQLTRLVQFAKDNGSIIVYDSAYA-LYISDDNPRSIFEIPGAKEVAIETSSFSK 277
G R +L + K + V D Y + I +PG E I S K
Sbjct: 196 GKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGK 255
Query: 278 YAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQA-------GGLACL 330
TG ++GW P+ LL + + A+ I +A
Sbjct: 256 TFSLTGWKIGWAYGPEALL--KNLQMVHQN-----CVYTCATPIQEAIAVGFETELKRLK 308
Query: 331 SPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVY---GG----------KNAPYVWVQFP 377
SPE + + + G D + +G GG + + +
Sbjct: 309 SPECY--FNSISGELMAKRDYMASFLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETD 366
Query: 378 GRSSWDVFSEILEKTHVVTTPGSGFG-----PGGEGFIRVSAFGHRGNVL-EACKRFKHL 431
R + + + + P S F GE F+R F + L +A + +
Sbjct: 367 ARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRY-CFFKKDENLQKAAEILRKW 425
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} Length = 447 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 1e-29
Identities = 85/421 (20%), Positives = 133/421 (31%), Gaps = 66/421 (15%)
Query: 53 KAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRA 112
KAA+ K E+I+LG G + P+ K AL + Y +G L
Sbjct: 47 KAANNSKNQGRELINLGQGFFSYSPPQFAIKEAQK---ALDI-PMVNQYSPTRGRPSLIN 102
Query: 113 AIASTFYKDLGIE--EGDIFVSDGAKCDI-SRLQ---------IVFGSNVTMAVQDPSYP 160
++ + E ++ V+ GA I S L IVF +P +
Sbjct: 103 SLIKLYSPIYNTELKAENVTVTTGANEGILSCLMGLLNAGDEVIVF---------EPFFD 153
Query: 161 AYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA-----RTDIIFFCSPN 215
Y+ + + G G+ K R T + D +T + +P+
Sbjct: 154 QYIPNIELCG--GKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITSKTKAVIINTPH 211
Query: 216 NPTGAAATREQLTRLVQFAKDNGSIIVYDSAY-ALYISDDNPRSIFEIPGAKEVAIETSS 274
NP G TRE+LT L + +I+ D Y LY +D R P ++ + S
Sbjct: 212 NPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGS 271
Query: 275 FSKYAGFTGVRLGWTV-IPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACL-SP 332
K TG R+GW + + ELL A CF S Q +
Sbjct: 272 AGKSFAATGWRIGWVLSLNAELL--SYAAKAHTRI-----CFASPS-PLQEACANSINDA 323
Query: 333 EGFKAVHEVIGFYKENTDIIVETFNSLGFKV---------------YGGKNAPYVWVQFP 377
++ Y I F+ LG +
Sbjct: 324 LKIGYFEKMRQEYINKFKIFTSIFDELGLPYTAPEGTYFVLVDFSKVKIPEDYPYPEEIL 383
Query: 378 GRSSWDVFSE-ILEKTHVVTTPGSGFG-----PGGEGFIRVSAFGHRGNVL-EACKRFKH 430
+ S ++ + VV P + F E +R + L A +R K
Sbjct: 384 NKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFA-VCKDDAYLENAVERLKL 442
Query: 431 L 431
L
Sbjct: 443 L 443
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* Length = 391 | Back alignment and structure |
|---|
Score = 116 bits (291), Expect = 5e-29
Identities = 71/407 (17%), Positives = 118/407 (28%), Gaps = 87/407 (21%)
Query: 65 VISLGIGDTTEPIP---------EVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIA 115
V++L GD T V SY E L AI
Sbjct: 24 VVNLDHGDPTAYEEYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPE-----LEDAIK 78
Query: 116 STF--YKDLGIEEGDIFVSDGAKCDISRLQIVF---GSNVTMAV--QDPSYPAYVDSSVI 168
+ E+ I V G+ + ++V P Y YV+ +
Sbjct: 79 DLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTY 138
Query: 169 MGQTG-EFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQL 227
+ +++ DA + K I SPNNP G
Sbjct: 139 VRSGMYKWEGDAWGFDK-------------------KGPYIELVTSPNNPDGTI-----R 174
Query: 228 TRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLG 287
+V D+ + +++D AY I ++ I +FSK G G R+G
Sbjct: 175 ETVVNRPDDDEAKVIHDFAYYWPHYTP-------ITRRQDHDIMLFTFSKITGHAGSRIG 227
Query: 288 WTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLS--PEGFKAVHEVIGFY 345
W ++ + VAK + G S SQ L+ E K+ E F+
Sbjct: 228 WALVKDKE-------VAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFF 280
Query: 346 KENTDIIVETFNSLG---------------------FKVYGGKNAPYVWVQFPGRSSWDV 384
K +++ + L F + W+ D+
Sbjct: 281 KYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTK--EETDL 338
Query: 385 FSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHL 431
L + V++ G G + +RVS +R ++
Sbjct: 339 V-SELRRHKVMSRAGERCG-SDKKHVRVSMLSREDVFNVFLERLANM 383
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A* Length = 410 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 7e-29
Identities = 77/410 (18%), Positives = 135/410 (32%), Gaps = 72/410 (17%)
Query: 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGI 124
V++LG G P + L+K + + + Y G L A++ + K
Sbjct: 25 VVNLGQGFPDISPPSYVKEELSKAA----FIDNMNQYTRGFGHPALVKALSCLYGKIYQR 80
Query: 125 E---EGDIFVSDGAKCDI-SRLQ---------IVFGSNVTMAVQDPSYPAYVDSSVIMGQ 171
+ +I V+ GA + + +Q I+ P Y Y V M
Sbjct: 81 QIDPNEEILVAVGAYGSLFNSIQGLVDPGDEVIIM---------VPFYDCYE-PMVRM-- 128
Query: 172 TGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA-----RTDIIFFCSPNNPTGAAATREQ 226
G K + + D + +T I +P+NP G TR++
Sbjct: 129 AGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKTKAIILNTPHNPLGKVYTRQE 188
Query: 227 LTRLVQFAKDNGSIIVYDSAYA-LYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVR 285
L + + ++ + D Y L + I +PG E I S K TG +
Sbjct: 189 LQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGWK 248
Query: 286 LGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACL--------SPEGFKA 337
LGW++ P L+ + + + A+ + QA PE +
Sbjct: 249 LGWSIGPAHLI--KHLQTVQQN-----SFYTCATPL-QAALAEAFWIDIKRMDDPECY-- 298
Query: 338 VHEVIGFYKENTDIIVETFNSLGFKVY---GG-------KNAPYVWVQFPGRSSWDV-FS 386
+ + + D +V NS+G K GG + +D F
Sbjct: 299 FNSLPKELEVKRDRMVRLLNSVGLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFV 358
Query: 387 E-ILEKTHVVTTPGSGFG-----PGGEGFIRVSAFGHRGNVL-EACKRFK 429
+ + + + P S F P E +R F + + L A + F+
Sbjct: 359 KWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRF-CFIKKDSTLDAAEEIFR 407
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* Length = 422 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 2e-28
Identities = 75/412 (18%), Positives = 138/412 (33%), Gaps = 68/412 (16%)
Query: 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGI 124
V++LG G P P+ A +A+S + Y G PL +AS F + LG
Sbjct: 30 VVNLGQGFPDFPPPDFAVEAFQ---HAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQ 86
Query: 125 E---EGDIFVSDGAKCDI-SRLQ---------IVFGSNVTMAVQDPSYPAYVDSSVIMGQ 171
E ++ V+ G + + Q I+ +P + Y +++ G
Sbjct: 87 EIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIII---------EPFFDCYEPMTMMAG- 136
Query: 172 TGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA-----RTDIIFFCSPNNPTGAAATREQ 226
G + K G I+ + + + D +A RT + +PNNP G +RE+
Sbjct: 137 -GRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREE 195
Query: 227 LTRLVQFAKDNGSIIVYDSAYA-LYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVR 285
L + + + + + D Y + SI +PG E + S K TG +
Sbjct: 196 LELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWK 255
Query: 286 LGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKA------VH 339
+GW + P ++ + F+ + SQA E
Sbjct: 256 VGWVLGPDHIM--KHLRTVHQN-----SVFHCPTQ-SQAAVAESFEREQLLFRQPSSYFV 307
Query: 340 EVIGFYKENTDIIVETFNSLGFKV------------YGGKNAPYVWVQFPGRSSWDV-FS 386
+ + D ++ + S+G K + +D F
Sbjct: 308 QFPQAMQRCRDHMIRSLQSVGLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFV 367
Query: 387 E-ILEKTHVVTTPGSGF-----GPGGEGFIRVSAFGHRGNVL-EACKRFKHL 431
+ +++ +V P S F + +IR F L ++ +
Sbjct: 368 KWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRF-CFVKDEATLQAMDEKLRKW 418
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} Length = 533 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 2e-27
Identities = 64/450 (14%), Positives = 121/450 (26%), Gaps = 119/450 (26%)
Query: 48 EIARRKAAHMLKYPDAEVISLGIG----DTTEPIPEVITSALAKRSYALSTQEGYSGYGA 103
+ + ++ + + + E + A+A Y
Sbjct: 88 FAFLDPDKNDEDKFLIDAVNYCHTELGLNRDKVVAEWVNGAVAN------------NYPV 135
Query: 104 EQGEKPLRAAIASTFYKDLGIE------EGDIFVSDGAKCDISRLQIVFGSNVTM----- 152
I + F ++L + + D+F ++G I N +
Sbjct: 136 PDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKGDK 195
Query: 153 -AVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA-----RT 206
A+ +P + Y+ + E + +N + + + +
Sbjct: 196 IAINEPIFTPYLRIPELKD--YEL--------VEVDLHSYEKNDWEIEPNEIEKLKDPSI 245
Query: 207 DIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDD-------NPRSI 259
+ +P NPT L + Q + N +++ ISD+ N +SI
Sbjct: 246 KALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMI--------ISDEVYGAFVPNFKSI 297
Query: 260 FEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGF------------------ 301
+ + + S+SK G TG RLG + ++ +F D
Sbjct: 298 YSV--VPYNTMLVYSYSKLFGCTGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSV 355
Query: 302 ---PVAKDF-------NRIVCTCFNGASNISQAGGLACLS----------PEGFKAVHEV 341
P F +R + + Q A S +
Sbjct: 356 VLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYIDIA 415
Query: 342 IGFYKENTDIIVETFNSLGFKV------------------YGGKNAPYVWVQFPGRSSWD 383
E D + + + + GK D
Sbjct: 416 RKLVSERYDQLHDAMQAPKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTN--NFEQVD 473
Query: 384 VFSEILEKTHVVTTPGSGFGPGGEGFIRVS 413
++ EK VV G GFG G +RVS
Sbjct: 474 FLLKLAEKNGVVLVDGVGFG-AKPGELRVS 502
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* Length = 546 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 2e-27
Identities = 60/422 (14%), Positives = 114/422 (27%), Gaps = 99/422 (23%)
Query: 64 EVISLGIG----DTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFY 119
+ +S D + E++ L Y + I +
Sbjct: 105 KSLSYVRDQLGLDPAAFLHEMVDGILG------------CNYPVPPRMLNISEKIVRQYI 152
Query: 120 K-DLGI-----EEGDIFVSDGAKCDISRLQIVFGSNVTM------AVQDPSYPAYVDSSV 167
++G E ++F +G ++ + N + A+ P + Y++
Sbjct: 153 IREMGADAIPSESVNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPE 212
Query: 168 IMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA-----RTDIIFFCSPNNPTGAAA 222
+ + + + S + I F +P+NP
Sbjct: 213 LAQ--YAL--------EEVAINADPSLNWQYPDSELDKLKDPAIKIFFCVNPSNPPSVKM 262
Query: 223 TREQLTRLVQFAKDNGS--IIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAG 280
+ L R+ ++ +I+ D Y + D+ +S+F I E + SFSKY G
Sbjct: 263 DQRSLERVRNIVAEHRPDLMILTDDVYGTFA--DDFQSLFAI--CPENTLLVYSFSKYFG 318
Query: 281 FTGVRLGWTVIPKELLFSDG-----------------------------FPVAKDFNRIV 311
TG RLG ++ +F + D +
Sbjct: 319 ATGWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVA 378
Query: 312 CTCFNGASNISQ---AGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKN 368
G S Q A + + + + +
Sbjct: 379 LNHTAGLSTPQQVQMALFSLFALMDEADEYKHTLKQLIRRRETTLYRELGMPPLRDENAV 438
Query: 369 APYVWVQFPG-----------------RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIR 411
Y + S+ D+ I ++T +V PG GFG R
Sbjct: 439 DYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVLLPGRGFG-SNRPSGR 497
Query: 412 VS 413
S
Sbjct: 498 AS 499
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* Length = 364 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 7e-26
Identities = 49/312 (15%), Positives = 100/312 (32%), Gaps = 44/312 (14%)
Query: 110 LRAAIASTFYKDLGIEEGDIFVSDGAKCD--ISRL-QIVFGSNVTMAVQDPSYPAYVDSS 166
L A+A + + I +G I + + + P + Y +
Sbjct: 64 LHQALA----RHHQVPASWILAGNGE--TESIFTVASGLKPRRAMIVT--PGFAEYGRAL 115
Query: 167 VIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA----RTDIIFFCSPNNPTGAAA 222
G +I +G+ + + D +F C+PNNPTG
Sbjct: 116 AQSG------------CEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLLP 163
Query: 223 TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFT 282
R L + K ++ D A+ +I I + + + S +K+
Sbjct: 164 ERPLLQAIADRCKSLNINLILDEAFIDFI-PHETGFIPALKDNPHIWV-LRSLTKFYAIP 221
Query: 283 GVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVI 342
G+RLG+ V + R ++ + ++ G L +
Sbjct: 222 GLRLGYLVNSDDAA-------MARMRR-QQMPWS-VNALAALAGEVALQDSAW--QQATW 270
Query: 343 GFYKENTDIIVETFNSL-GFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSG 401
+ +E + L VY G+ A Y+ ++ R D+ +L + ++ +
Sbjct: 271 HWLREEGARFYQALCQLPLLTVYPGR-ANYLLLRCE-REDIDLQRRLLTQ-RILIRSCAN 327
Query: 402 FGPGGEGFIRVS 413
+ + RV+
Sbjct: 328 YPGLDSRYYRVA 339
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} Length = 407 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 5e-25
Identities = 88/398 (22%), Positives = 146/398 (36%), Gaps = 77/398 (19%)
Query: 53 KAAHMLKYPDAEVISLGIGDTTEPIPEVI-TSALAKRSYALSTQEGYS-GYGAEQGEKPL 110
K A L+ ++ISL G +P PE+I + L + + + +E S Y G L
Sbjct: 24 KKASELQKKGVKLISLAAG---DPDPELIPRAVLGEIAKEVLEKEPKSVMYTPANGIPEL 80
Query: 111 RAAIASTFYKDLGIE--EGDIFVSDGAK--CD-ISRLQIVFGSNVTMAVQDPSYPAYVDS 165
R +A+ K +E +I ++ G D + R+ I G V ++PSY + +
Sbjct: 81 REELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLIDPGDVV--ITENPSYINTLLA 138
Query: 166 SVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDL--STVARTDI------IFFCSPN-- 215
F++ K + +G DL + + + P
Sbjct: 139 ---------FEQLGAKIEGVP----VDNDGMRVDLLEEKIKELKAKGQKVKLIYTIPTGQ 185
Query: 216 NPTGAAATREQLTRLVQFAKDNGSIIVYDSAY-ALYISDDNPRSIFEIPGAKEVAIETSS 274
NP G + E+ L++ A +I+ D+AY + + + + V I +
Sbjct: 186 NPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRV-IVAGT 244
Query: 275 FSKYAGFTGVRLGWTVIPKELLFSDGFPVAK---DFNRIVCTCFNGASNISQAGGLACLS 331
SK TG R+GW + E+L + K DF A ISQ L L
Sbjct: 245 LSKVL-GTGFRIGWIIAEGEIL--KKVLMQKQPIDF---------CAPAISQYIALEYLK 292
Query: 332 PEGFKAVH--EVIGFYKENTDIIVETFNSL-----------GFKVYGGKNAPYVWVQFP- 377
F+ H + YKE DI+++ + G +V P
Sbjct: 293 RGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTKPIAGM---------FVMFFLPE 343
Query: 378 GRSSWDVFSEILEKTHVVTTPGSGFGPGGEG--FIRVS 413
G +E++E+ VV PG F G IR++
Sbjct: 344 GADGISFANELMEREGVVVVPGKPFYTDESGKNAIRLN 381
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} Length = 430 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 5e-25
Identities = 51/394 (12%), Positives = 120/394 (30%), Gaps = 36/394 (9%)
Query: 59 KYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTF 118
+ + IG T ++ S+L L T + Y QG + LR
Sbjct: 43 AEAKSTTYNATIGMATNKDGKMFASSLDAMFNDL-TPDEIFPYAPPQGIEELRDLWQQKM 101
Query: 119 YKD----LGIEEGDIFVSDGAKCDIS-RLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTG 173
+D V++ +S + + T+ + + ++ Y +
Sbjct: 102 LRDNPELSIDNMSRPIVTNALTHGLSLVGDLFVNQDDTILLPEHNWGNYKL---VFNTRN 158
Query: 174 EFQKDAEKYGKIEYMRCTAENGFFPDLSTV-ARTDIIFFCSPNNPTGAAATREQLTRLVQ 232
+ T + L + I+ PNNPTG T +++T +V+
Sbjct: 159 GANLQTYPIFDKDG-HYTTD-SLVEALQSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVE 216
Query: 233 FAKDNGS-----IIVYDSAYALYISDDNPR-----SIFEIPGAKEVAIETSSFSKYAGFT 282
K + I V D AY +D ++ + + I +K
Sbjct: 217 AIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAW 276
Query: 283 GVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLS-PEGFKA--VH 339
G R+G+ + AK ++ + + +Q+ L + F
Sbjct: 277 GFRVGFMTFGTSDQTTKEVLEAK-VKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQ 335
Query: 340 EVIGF---YKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVT 396
+ Y+ +++ ++ Y + ++ ++ + +++K +
Sbjct: 336 NIQTLKERYEVTKEVVYADQYHSHWQAYDFNSGYFMAIKVHDVDPEALRKHLIDKYSIGV 395
Query: 397 TPGSGFGPGGEGFIRVS-AFGHRGNVLEACKRFK 429
+ IR++ + + ++
Sbjct: 396 IALNATD------IRIAFSCVEKDDIPHVFDSIA 423
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} Length = 361 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 2e-24
Identities = 53/312 (16%), Positives = 116/312 (37%), Gaps = 45/312 (14%)
Query: 110 LRAAIASTFYKDLGIEEGDIFVSDGAKCD--ISRLQIVFGSNVTMAVQDPSYPAYVDSSV 167
L +I L +++ I + +GA I +F + + PSY Y ++
Sbjct: 66 LNKSIE----NYLKLKDIGIVLGNGA--SEIIELSISLFEKILIIV---PSYAEYEINAK 116
Query: 168 IMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDL----STVARTDIIFFCSPNNPTGAAAT 223
G + + + D S + D + +PNNP G
Sbjct: 117 KHG------------VSVVF--SYLDENMCIDYEDIISKIDDVDSVIIGNPNNPNGGLIN 162
Query: 224 REQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTG 283
+E+ +++ A++ I+ D A+ + D + + EI + I + +K+ G
Sbjct: 163 KEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFI-IRAMTKFFAMPG 221
Query: 284 VRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIG 343
+R G+ + + + A +N + ++ + CL + + E +
Sbjct: 222 IRFGYGITNNKEI-------AAKIKA-KQNPWN-INCFAEMAAINCLKDTNY--IEESLL 270
Query: 344 FYKENTDIIVETFNSLGF--KVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSG 401
+ K+ +E N +GF +V+ A +V + S ++ +L++ +V
Sbjct: 271 WIKKERKRFIEELNKIGFIKRVFSPH-ANFVLCRLENISGEKLYDSLLKE-DIVIRRCCN 328
Query: 402 FGPGGEGFIRVS 413
F + F+R +
Sbjct: 329 FIGLDDSFVRFA 340
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} Length = 350 | Back alignment and structure |
|---|
Score = 99.5 bits (249), Expect = 2e-23
Identities = 57/308 (18%), Positives = 117/308 (37%), Gaps = 45/308 (14%)
Query: 110 LRAAIASTFYKDLGIEEGDIFVSDGAKCD--ISRL-QIVFGSNVTMAVQDPSYPAYVDSS 166
LR +A K ++ I V++G ++ Q GS +A+ PS+ Y D+
Sbjct: 55 LRQMLA----KRNSVDNNAILVTNGP--TAAFYQIAQAFRGSRSLIAI--PSFAEYEDAC 106
Query: 167 VIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQ 226
+ ++ + + G + D + C+PNNP G R +
Sbjct: 107 RMYE------------HEVCFYPSNEDIGEADF----SNMDFCWLCNPNNPDGRLLQRTE 150
Query: 227 LTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRL 286
+ RL+ + V D +Y + + + +I G K + + SFS G G+R+
Sbjct: 151 ILRLL--NDHPDTTFVLDQSYVSF-TTEEVIRPADIKGRKNLVM-VYSFSHAYGIPGLRI 206
Query: 287 GWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYK 346
G+ V K+ + K T + + ++ L I ++
Sbjct: 207 GYIVANKDFM--------KRVAA-FSTPWA-VNALAIEAAKFILIHPAQ--FTLPIRKWQ 254
Query: 347 ENTDIIVETFNSL-GFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPG 405
NT + N L G +V+ + ++ ++ ++ +LE+ +++ S F
Sbjct: 255 RNTVDFITALNRLDGVEVHPSG-TTFFLLRLKKGTAAELKKYMLEEYNMLIRDASNFRGL 313
Query: 406 GEGFIRVS 413
E ++R++
Sbjct: 314 DESYVRIT 321
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} Length = 365 | Back alignment and structure |
|---|
Score = 99.2 bits (248), Expect = 3e-23
Identities = 50/318 (15%), Positives = 112/318 (35%), Gaps = 55/318 (17%)
Query: 110 LRAAIASTFYKDLGIEEGDIFVSDGAKCD-----ISRLQIVFGSNVTMAVQDPSYPAYVD 164
L++ +A + ++ +I + G+ D ++ + A ++ Y
Sbjct: 70 LKSTLA----QKYKVQNENIIIGAGS--DQVIEFAIHSKLNSKNAFLQA--GVTFAMYEI 121
Query: 165 SSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA-----RTDIIFFCSPNNPTG 219
+ G + + + + +IF C PNNP G
Sbjct: 122 YAKQCGAKCYKTQ--------------SITHNLDEFKKLYETHKDEIKLIFLCLPNNPLG 167
Query: 220 AAATREQLTRLVQFAKDNGSIIVYDSAYALYIS-DDNPRSIFEIPGAKE---VAIETSSF 275
+ T ++ + ++V D+AY + S D+ + + KE V +F
Sbjct: 168 ECLDASEATEFIK-GVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLY-LGTF 225
Query: 276 SKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF 335
SK G G+R+G+ + + F + + FN SN++ +A + + F
Sbjct: 226 SKLYGLGGLRIGYGIANAN--------IISAFYK-LRAPFN-VSNLALKAAVAAMDDDEF 275
Query: 336 KAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVV 395
+ + ++ E K+ ++ F ++S D+ ++L+K ++
Sbjct: 276 --TEKTLENNFSQMELYKEFAKKHNIKIIDSY-TNFITYFFDEKNSTDLSEKLLKKG-II 331
Query: 396 TTPGSGFGPGGEGFIRVS 413
+G IR++
Sbjct: 332 IRNLKSYGL---NAIRIT 346
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} Length = 337 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 8e-23
Identities = 55/315 (17%), Positives = 91/315 (28%), Gaps = 65/315 (20%)
Query: 110 LRAAIASTFYKDLGIEEGDIFV---SDGAKCDISRL-QIVFGSNVTMAVQDPSYPAYVDS 165
+ +A F E ++ + D R+ A P + Y
Sbjct: 56 VMRKLAEHF----SCPEDNLMLVRGIDEC---FDRISAEFSSMRFVTA--WPGFDGYRAR 106
Query: 166 SVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA---RTDIIFFCSPNNPTGAAA 222
+ G + + + D + +A R D + +P+NPTG A
Sbjct: 107 IAVSG--------------LRHFEIGLTDDLLLDPNDLAQVSRDDCVVLANPSNPTGQAL 152
Query: 223 TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFT 282
+ +L +L Q A ++ D Y Y S R + + SFSK G
Sbjct: 153 SAGELDQLRQRA----GKLLIDETYVDY-SSFRARGLAYGE---NELV-FRSFSKSYGLA 203
Query: 283 GVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVI 342
G+RLG P EL R N + A L + I
Sbjct: 204 GLRLGALFGPSEL--------IAAMKR-KQWFCN-VGTLDLHALEAALDNDRA--REAHI 251
Query: 343 GFYKENTDIIVETFNSLGFKVYGGKNAP----YVWVQFPGRSSWDVFSEILEKTHVVTTP 398
+ + LG++V +V V+ + E+ +
Sbjct: 252 AKTLAQRRRVADALRGLGYRVA-----SSEANFVLVENAAGE--RTLRFLRER-GIQVKD 303
Query: 399 GSGFGPGGEGFIRVS 413
G IR+S
Sbjct: 304 AG--QFGLHHHIRIS 316
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} Length = 354 | Back alignment and structure |
|---|
Score = 98.0 bits (245), Expect = 8e-23
Identities = 47/318 (14%), Positives = 98/318 (30%), Gaps = 56/318 (17%)
Query: 110 LRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQIVF------GSNVTMAVQDPSYPAYV 163
L +A +E I ++ G+ + ++ + + + + +Y
Sbjct: 56 LGNKLA----AHHQVEAPSILLTAGS-SEG--IRAAIEAYASLEAQLVIP--ELTYGDGE 106
Query: 164 DSSVIMGQTG-------EFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNN 216
+ I G + D E A + I++ +PNN
Sbjct: 107 HFAKIAGMKVTKVKMLDNWAFDIEGLKA----AVAAY--------SGPS--IVYLVNPNN 152
Query: 217 PTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISD-DNPRSIFEIPGAKEVAIETSSF 275
PTG + + + N ++ + D AYA +++D I E I +F
Sbjct: 153 PTGTITPADVIEPWIASKPAN-TMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTF 211
Query: 276 SKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF 335
SK G+R+G+ V + R + LA ++ F
Sbjct: 212 SKIHAMAGMRVGYAVAHPTV--------IALMGR-YVAGEK-INFSGVDAALASMNDSAF 261
Query: 336 KAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVV 395
+ + I+++ L + +V+ Q D + + + V+
Sbjct: 262 --ITYSKKSNDVSRQILLKALEDLKLPYLPSE-GNFVFHQLVVPLK-DYQTHMADA-GVL 316
Query: 396 TTPGSGFGPGGEGFIRVS 413
P + + R+S
Sbjct: 317 IGRA---FPPADNWCRIS 331
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} Length = 363 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 1e-22
Identities = 62/315 (19%), Positives = 118/315 (37%), Gaps = 52/315 (16%)
Query: 110 LRAAIASTFYKDLGIEEGDIFVSDGAKCD-----ISRLQIVFGSNVTMAVQDPSYPAYVD 164
LR +A +EE ++ + G D ++R+ + +N MA P++ Y
Sbjct: 72 LRKEVA----DFYQLEEEELIFTAGV--DELIELLTRVLLDTTTNTVMA--TPTFVQYRQ 123
Query: 165 SSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA-----RTDIIFFCSPNNPTG 219
+++I G ++ + + DL + +T I++ C+PNNPTG
Sbjct: 124 NALIEG------------AEVREIPLLQDGEH--DLEGMLNAIDEKTTIVWICNPNNPTG 169
Query: 220 AAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYA 279
+ + + ++V D AY Y++ + + K + I T +FSK
Sbjct: 170 NYIELADIQAFLDRVPSD-VLVVLDEAYIEYVTPQPEKHEKLVRTYKNLII-TRTFSKIY 227
Query: 280 GFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVH 339
G R+G+ + KE+ + N V FN ++I Q + + + F +
Sbjct: 228 GLASARVGYGIADKEI--------IRQLNI-VRPPFN-TTSIGQKLAIEAIKDQAF--IG 275
Query: 340 EVIGFYKENTDIIVETFNSL-GFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTP 398
E K+Y +V + G + +F LEK +T
Sbjct: 276 ECRTSNANGIKQYEAFAKRFEKVKLYPAN-GNFVLIDL-GIEAGTIF-SYLEKNGYITRS 332
Query: 399 GSGFGPGGEGFIRVS 413
G+ G +R++
Sbjct: 333 GAAL--GFPTAVRIT 345
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} Length = 360 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 1e-22
Identities = 52/315 (16%), Positives = 100/315 (31%), Gaps = 61/315 (19%)
Query: 110 LRAAIASTFYKDLGIEEGDIFV---SDGAKCDISRLQIVF------GSNVTMAVQDPSYP 160
LR + G + I + SD ++ L + G + PSY
Sbjct: 70 LREVAGELY----GFDPSWIIMANGSD----EV--LNNLIRAFAAEGEEIGYV--HPSYS 117
Query: 161 AYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV-ARTDIIFFCSPNNPTG 219
Y + + G F + F +PN P G
Sbjct: 118 YYGTLAEVQG--------------ARVRTFGLTGDFRIAGFPERYEGKVFFLTTPNAPLG 163
Query: 220 AAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYA 279
+ E + A+ ++V D YA + + ++ + + V + T + SK
Sbjct: 164 PSFPLEYIDE---LARRCAGMLVLDETYAEFAESN---ALELVRRHENVVV-TRTLSKSY 216
Query: 280 GFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLS-PEGFKAV 338
G+R+G + E+ ++ + +N ++QA +A L
Sbjct: 217 SLAGMRIGLAIARPEV--------IAALDK-IRDHYN-LDRLAQAACVAALRDQAYLSEC 266
Query: 339 HEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTP 398
I +E + S+G+ V + Y++ P R V+ + + V+
Sbjct: 267 CRRI---RETREWFTTELRSIGYDVIPSQ-GNYLFATPPDRDGKRVYDGLYAR-KVLVRH 321
Query: 399 GSGFGPGGEGFIRVS 413
S P +R+S
Sbjct: 322 FS--DPLLAHGMRIS 334
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 Length = 425 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 7e-22
Identities = 76/383 (19%), Positives = 133/383 (34%), Gaps = 64/383 (16%)
Query: 64 EVISLGIGDTTEPIPEVI-TSALAKRSYALSTQEGYS--GYGAEQGEKPLRAAIASTFYK 120
+ IS G G P PE LA+ + + +E + Y +G+ L+ I +
Sbjct: 44 DAISFGGG---VPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLER 100
Query: 121 DLGI---EEGDIFVSDGAK--CD-ISRLQIVFGSNVTMAVQDPSYPAYVDS--------- 165
GI +E ++ + G++ D I +L + S + DP+Y +++
Sbjct: 101 MYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYC--VLDDPAYLGAINAFRQYLANFV 158
Query: 166 SVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPN--NPTGAAAT 223
V + G + + + + N NP G +
Sbjct: 159 VVPLEDDGM---------DLNVLERKLSEFDKNGKIKQVK---FIYVVSNFHNPAGVTTS 206
Query: 224 REQLTRLVQFAKDNGSIIVYDSAY-ALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFT 282
E+ LV+ A+ IV D Y AL + IF+I G + V + ++FSK
Sbjct: 207 LEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERV-VLLNTFSKVL-AP 264
Query: 283 GVRLGWTVIPKELLFSDGFPVAK---DFNRIVCTCFNGASNISQAGGLACLSPEGFKA-V 338
G+R+G KE + AK D + I+ L +
Sbjct: 265 GLRIGMVAGSKEFI--RKIVQAKQSADL---------CSPAITHRLAARYLERYDLLEQL 313
Query: 339 HEVIGFYKENTDIIVETFNSLGFKVYGGK-NAP----YVWVQFP-GRSSWDVFSEILEKT 392
I Y+ +++ + G K ++W+ P G +W++F K
Sbjct: 314 KPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGFDTWEMFEYAKRK- 372
Query: 393 HVVTTPGSGFGPGGEG--FIRVS 413
V PG F E +R+S
Sbjct: 373 KVFYVPGRVFKVYDEPSPSMRLS 395
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* Length = 356 | Back alignment and structure |
|---|
Score = 94.2 bits (235), Expect = 1e-21
Identities = 58/315 (18%), Positives = 113/315 (35%), Gaps = 51/315 (16%)
Query: 110 LRAAIASTFYKDLGIEEGDIFVSDGAKCD--ISRLQIVF---GSNVTMAVQDPSYPAYVD 164
+ A + G++ + VS GA D I L F G + + P+Y Y
Sbjct: 63 VIENYA----QYAGVKPEQVLVSRGA--DEGIELLIRAFCEPGKDAILYCP-PTYGMYSV 115
Query: 165 SSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD----LSTVARTDIIFFCSPNNPTGA 220
S+ +G +E + + D + +++ CSPNNPTG
Sbjct: 116 SAETIG--------------VECRTVPTLDNWQLDLQGISDKLDGVKVVYVCSPNNPTGQ 161
Query: 221 AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAG 280
+ L++ + I+V D AY + + +AI + SK
Sbjct: 162 LINPQDFRTLLELTRGKA-IVVADEAYIEFCPQ--ASLAGWLAEYPHLAI-LRTLSKAFA 217
Query: 281 FTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHE 340
G+R G+T+ +E V +++ + S LSP+G A+ E
Sbjct: 218 LAGLRCGFTLANEE--------VINLLMKVIAP-YP-LSTPVADIAAQALSPQGIVAMRE 267
Query: 341 VIGFYKENTDIIVETFNSLGF--KVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTP 398
+ + ++ + +V+ + Y+ +F S VF + ++ ++
Sbjct: 268 RVAQIIAEREYLIAALKEIPCVEQVFDSE-TNYILARFKASS--AVFKSLWDQ-GIILRD 323
Query: 399 GSGFGPGGEGFIRVS 413
+ P G +R++
Sbjct: 324 QNKQ-PSLSGCLRIT 337
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* Length = 448 | Back alignment and structure |
|---|
Score = 95.4 bits (238), Expect = 2e-21
Identities = 76/396 (19%), Positives = 140/396 (35%), Gaps = 74/396 (18%)
Query: 57 MLKY-PDAEVISLGIGDTTEPIPEVI-TSALAKRSYALSTQEGYS--GYGAEQGEKPLRA 112
+LK +++ISL G P P+ + + + YG +G PLR
Sbjct: 69 LLKLVETSDIISLAGG---LPNPKTFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRE 125
Query: 113 AIASTFYKDLGI--EEGDIFVSDGAK--CD-ISRLQIVFGSNVTMAVQDPSYPAYVDSSV 167
+ + ++ DI ++ G++ D I R+ + G V V+ P+Y A + +
Sbjct: 126 TLMK-WLGKRYGISQDNDIMITSGSQQALDLIGRVFLNPGDIV--VVEAPTYLAALQA-- 180
Query: 168 IMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDL--STVARTDI------IFFCSPN--NP 217
F +Y +I + G ++ + + + P NP
Sbjct: 181 -------FNFYEPQYIQIP----LDDEGMKVEILEEKLKELKSQGKKVKVVYTVPTFQNP 229
Query: 218 TGAAATREQLTRLVQFAKDNGSIIVYDSAYA-LYISDDNPRSIFEIPGAKEVAIETSSFS 276
G ++ L++ A + I+V D Y L S + + I + V I +FS
Sbjct: 230 AGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRV-IYLGTFS 288
Query: 277 KYAGFTGVRLGWTVIPKELLFSDGFPVAK---DFNRIVCTCFNGASNISQAGGLACLSPE 333
K G R+GW V ++ +AK D + Q +
Sbjct: 289 KIL-APGFRIGWMVGDPGII--RKMEIAKQSTDL---------CTNVFGQVVAWRYVDGG 336
Query: 334 GFKA-VHEVIGFYKENTDIIVETFNSLGFKVYGGKNA----P----YVWVQFP-GRSSWD 383
+ + E+ FYK D ++E + + P ++WV P G S
Sbjct: 337 YLEKHIPEIRKFYKPRRDAMLEALEE-----FMPEGVKWTKPEGGMFIWVTLPDGIDSKK 391
Query: 384 VFSEILEKTHVVTTPGSGFGPGGEG--FIRVSAFGH 417
+ ++K V PG F + +R++ F +
Sbjct: 392 MLERAIKK-GVAYVPGEAFYAHRDVKNTMRLN-FTY 425
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* Length = 397 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 9e-21
Identities = 87/383 (22%), Positives = 149/383 (38%), Gaps = 67/383 (17%)
Query: 62 DAEVISLGIGDTTEPIPEVI-TSALAKRSYALSTQEGYS--GYGAEQGEKPLRAAIASTF 118
++S G P PE+ A+ + + ++G Y +G PLRA +A
Sbjct: 31 RPGILSFAGG---LPAPELFPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVA--- 84
Query: 119 YKDLGIEEGDIFVSDGAK--CD-ISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEF 175
+ +G+ ++ ++ G++ D + ++ + GS V ++ PSY + + F
Sbjct: 85 -EWIGVRPEEVLITTGSQQALDLVGKVFLDEGSPV--LLEAPSYMGAIQA---------F 132
Query: 176 QKDAEKYGKIEYMRCTAENGFFPD-LSTVARTDIIFFC--SPN--NPTGAAATREQLTRL 230
+ ++ + E G D L V + + F P+ NPTG RL
Sbjct: 133 RLQGPRFLTVP----AGEEGPDLDALEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRL 188
Query: 231 VQFAKDNGSIIVYDSAYA-LYISDDNPRSIFEI--PGAKEVAIETSSFSKYAGFTGVRLG 287
+Q + G ++V D AY LY + S+FE+ I SFSK G+R+
Sbjct: 189 LQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVL-SPGLRVA 247
Query: 288 WTVIPKELLFSDGFPVAK---DFNRIVCTCFNGASNISQAGGLACLSPEGFKA-VHEVIG 343
+ V E L AK D ++Q L EGF + V
Sbjct: 248 FAVAHPEAL--QKLVQAKQGADL---------HTPMLNQMLVHELLK-EGFSERLERVRR 295
Query: 344 FYKENTDIIVETFNSL---GFKVY---GGKNAPYVWVQFP-GRSSWDVFSEILEKTHVVT 396
Y+E ++ + + GG +VW++ P G S+ +F LE+ +V
Sbjct: 296 VYREKAQAMLHALDREVPKEVRYTRPKGGM---FVWMELPKGLSAEGLFRRALEE-NVAF 351
Query: 397 TPGSGFGPGGEG--FIRVSAFGH 417
PG F G G +R+S +
Sbjct: 352 VPGGPFFANGGGENTLRLS-YAT 373
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* Length = 335 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 4e-20
Identities = 49/292 (16%), Positives = 99/292 (33%), Gaps = 59/292 (20%)
Query: 110 LRAAIASTFYKDLGIEEGDIFV---SDGAKCDISRLQIVF--GSNVTMAVQDPSYPAYVD 164
L I S + + + ++ V +D + ++ P+Y Y
Sbjct: 61 LIEKILS-YLDTDFLSKNNVSVGNGADEI------IYVMMLMFDRSVFF--PPTYSCYRI 111
Query: 165 SSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATR 224
+ +G +++ V D++F +PNNPTG R
Sbjct: 112 FAKAVG--------------AKFLEVPLTKDLRIPEVNVGEGDVVFIPNPNNPTGHVFER 157
Query: 225 EQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGV 284
E++ R++ G+ + D AY + + + + + +A+ +FSK
Sbjct: 158 EEIERIL----KTGAFVALDEAYYEFHGES---YVDFLKKYENLAV-IRTFSKAFSLAAQ 209
Query: 285 RLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLS-PEGFKAVHEVIG 343
R+G+ V ++ +NR V FN S +SQ L E F+ + I
Sbjct: 210 RVGYVVASEKF--------IDAYNR-VRLPFN-VSYVSQMFAKVALDHREIFEERTKFI- 258
Query: 344 FYKENTDIIVETFNSLGFKVYGGKNAP----YVWVQFPGRSSWDVFSEILEK 391
E + + +G+++ +V+V + + K
Sbjct: 259 --VEERERMKSALREMGYRIT-----DSRGNFVFVFMEKEEKERLLEHLRTK 303
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} Length = 367 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 1e-18
Identities = 54/322 (16%), Positives = 111/322 (34%), Gaps = 64/322 (19%)
Query: 110 LRAAIASTFYKDLGIEEGD-IFVSDGAKCD--ISRL-QIVFGSNVTMAVQDPSYPAYVDS 165
LRA + + + + G + + +G+ D IS L + P + Y S
Sbjct: 72 LRAKLK----EVMQVPAGMEVLLGNGS--DEIISMLALAAARPGAKVMAPVPGFVMYAMS 125
Query: 166 SVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA------RTDIIFFCSPNNPTG 219
+ G +E++ F D + + I++ PNNPTG
Sbjct: 126 AQFAG--------------LEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLAYPNNPTG 171
Query: 220 AAATREQLTRLVQFAKDN--GSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSK 277
+ +V+ A+ + S++V D AY + + + + + + + SK
Sbjct: 172 NLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQES---WMSRLTDFGNLLV-MRTVSK 227
Query: 278 YAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLS-PEGFK 336
G G+RLG+ + + ++ V +N + +++A L L
Sbjct: 228 L-GLAGIRLGYVAGDPQ--------WLEQLDK-VRPPYN-VNVLTEATALFALEHVAVLD 276
Query: 337 AVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAP----YVWVQFPGRSSWDVFSEILEK 391
+ + + E + G V+ P ++ + P + F +L +
Sbjct: 277 EQAAQL---RAERSRVAEGMAAHGGVTVF-----PSAANFLLARVPDAA--QTFDRLLAR 326
Query: 392 THVVTTPGSGFGPGGEGFIRVS 413
V+ S P +RV+
Sbjct: 327 -KVLIKNVSKMHPLLANCLRVT 347
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* Length = 425 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 2e-18
Identities = 80/421 (19%), Positives = 142/421 (33%), Gaps = 57/421 (13%)
Query: 52 RKAAHMLKYPDAEVISLGIGD---TTEPIPEVITSALAKRSYALSTQEGYS--GYGAEQG 106
R +L +ISL G P + + ++ + Y G
Sbjct: 20 RTMTDILSRGPKSMISLAGGLPNPNMFPFKTAVITVENGKTIQFGEEMMKRALQYSPSAG 79
Query: 107 EKPLRAAIA---------STFYKDLGIEEGDIFVSDGAK--CD-ISRLQIVFGSNVTMAV 154
L + + T + + D+ V+ G++ + + I G NV +
Sbjct: 80 IPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNV--LL 137
Query: 155 QDPSYPAYVDSSVIMG-QTGEFQKDAEKYG-KIEYMRCTAENGFFPDLSTVARTDI-IFF 211
+P+Y + S +G D G + +R D + +
Sbjct: 138 DEPAYSGTLQSLHPLGCNIINVASDES--GIVPDSLRDILSRWKPEDAKNPQKNTPKFLY 195
Query: 212 CSPN--NPTGAAATREQLTRLVQFAKDNGSIIVYDSAY-ALYISDDNPRSIFEIPGAKEV 268
PN NPTG + T E+ + + A+ +I+ D Y L + + + V
Sbjct: 196 TVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRV 255
Query: 269 AIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQ---AG 325
I SFSK +G+R+G+ PK L+ + + + S +Q +
Sbjct: 256 -IRADSFSKIIS-SGLRIGFLTGPKPLI--ERVILHIQ-VSTLHP-----STFNQLMISQ 305
Query: 326 GLACLSPEGFKA-VHEVIGFYKENTDIIVETFNSLGFKVYGGK---NAP----YVWVQFP 377
L EGF A V VI FY D I+ + K G + P ++W++
Sbjct: 306 LLHEWGEEGFMAHVDRVIDFYSNQKDAILAAAD----KWLTGLAEWHVPAAGMFLWIKVK 361
Query: 378 -GRSSWDVFSEILEKTHVVTTPGSGF---GPGGEGFIRVS-AFGHRGNVLEACKRFKHLY 432
++ E K V+ PG+ F ++R S + + A + L
Sbjct: 362 GINDVKELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVLAQLI 421
Query: 433 K 433
K
Sbjct: 422 K 422
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A Length = 369 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 9e-18
Identities = 55/326 (16%), Positives = 99/326 (30%), Gaps = 74/326 (22%)
Query: 110 LRAAIASTFYKDL--GIEEGDIFV---SDGAKCDISRLQIVF------GSNVTMAVQDPS 158
LR +A+ K + +++ S+ LQ + G PS
Sbjct: 74 LRDELAAYITKQTGVAVTRDNLWAANGSNEI------LQQLLQAFGGPGRTALGF--QPS 125
Query: 159 YPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA------RTDIIFFC 212
Y + + E++ + F D+ + DI+F
Sbjct: 126 YSMHPILAKGTH--------------TEFIAVSRGADFRIDMDVALEEIRAKQPDIVFVT 171
Query: 213 SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIET 272
+PNNPTG + + + R I++ D AYA + P + + + +
Sbjct: 172 TPNNPTGDVTSLDDVER---IINVAPGIVIVDEAYAEFSPS--PSATTLLEKYPTKLVVS 226
Query: 273 SSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLS- 331
+ SK F G RLG+ V V ++ S +SQA + L
Sbjct: 227 RTMSKAFDFAGGRLGYFVANPA--------FIDAVML-VRLPYH-LSALSQAAAIVALRH 276
Query: 332 PEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAP----YVWVQFPGRSSWDVFSE 387
E + + LG+ V P +V+ +
Sbjct: 277 SADTLGTVEKL---SVERVRVAARLEELGYAVV-----PSESNFVFFGDFSDQH-AAWQA 327
Query: 388 ILEKTHVVTTPGSGFGPGGEGFIRVS 413
L++ V+ G G +R +
Sbjct: 328 FLDR-GVLIRD-----VGIAGHLRTT 347
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} Length = 422 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 1e-16
Identities = 68/386 (17%), Positives = 123/386 (31%), Gaps = 59/386 (15%)
Query: 64 EVISLGIGDTTEPIPE---VITSALAKRSYALSTQEGYS--GYGAEQGEKPLRAAIASTF 118
+ L G +P E + L+ T++G YG G +R A
Sbjct: 33 LSLDLTRG---KPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWA--- 86
Query: 119 YKDLGIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIM------GQT 172
+ LG+ + DG+ +I I + + A +
Sbjct: 87 -EALGLPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHF 145
Query: 173 GEFQKDAEKYGKIEYMRC-TAENGFFPDLSTVART-----DIIFFCSPN--NPTGAAATR 224
+ +G E + + G PD+ V + P NPTG +
Sbjct: 146 TITEH----FG-FEMINVPMTDEG--PDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSE 198
Query: 225 EQLTRLVQFA-KDNGSIIVYDSAYA-LYISDDNPRSIFEIPGAKEV-----AIETSSFSK 277
+ L + + IV+D+AYA +SD+ P I A+ SS SK
Sbjct: 199 QTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSK 258
Query: 278 YAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACL-SPEGFK 336
G + + KE + + + + I G + ++Q G K
Sbjct: 259 IT-HAGSGVSFFASSKENI--EWYASHANVRGI------GPNKLNQLAHAQFFGDVAGLK 309
Query: 337 A-VHEVIGFYKENTDIIVETFNSLGFKVYGGK-NAP----YVWVQFPGRSSWDVFSEILE 390
A + + + ++E +S + K +P ++ V ++ V E
Sbjct: 310 AHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVVPGTASRVVELAKE 369
Query: 391 KTHVVTTPGSGFGPGGEG---FIRVS 413
+T GS F + IR++
Sbjct: 370 AGIALTGAGSSFPLHNDPNNENIRLA 395
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} Length = 427 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 1e-15
Identities = 57/394 (14%), Positives = 112/394 (28%), Gaps = 74/394 (18%)
Query: 64 EVISLGIG---DTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK 120
+ L G + + + K + + YG G +R A
Sbjct: 34 LKLDLTRGKPSSEQLDFADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWA----D 89
Query: 121 DLGIEEGDIFVSDGAKCDISRLQIVFGS---------------NVTMAVQDPSYPAYVDS 165
LG+ + D + +I I + V P Y +
Sbjct: 90 LLGVPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSI 149
Query: 166 SVIMGQTGEFQKDAEKYGKIEYMRC-TAENGFFPDL--STVARTDIIFF-CSPN--NPTG 219
E++G E + E+G D V + P NPTG
Sbjct: 150 ---------T----ERFG-FEMISVPMNEDGPDMDAVEELVKNPQVKGMWVVPVFSNPTG 195
Query: 220 A---AATREQLTRLVQFAKDNGSIIVYDSAYA-LYISDDNPRSIFEIPGAKEV-----AI 270
++L+ + +V+D+AYA ++D+ P I + +
Sbjct: 196 FTVTEDVAKRLSAM--ETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFW 253
Query: 271 ETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACL 330
+S SK G + + + E + I G + ++Q
Sbjct: 254 AFTSTSKIT-LAGAGVSFFLTSAENR--KWYTGHAGIRGI------GPNKVNQLAHARYF 304
Query: 331 -SPEGFKA-VHEVIGFYKENTDIIVETFNS-LGFKVYGGKNAP----YVWVQFPGRSSWD 383
EG +A + + + ++E +S L P ++ + ++
Sbjct: 305 GDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPGTASR 364
Query: 384 VFSEILEKTHVVTTPGSGFGPGGEG----FIRVS 413
V E + T P + +R++
Sbjct: 365 VAELAKEA-GIALTGAGSSYPLRQDPENKNLRLA 397
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} Length = 377 | Back alignment and structure |
|---|
Score = 76.8 bits (190), Expect = 2e-15
Identities = 72/415 (17%), Positives = 120/415 (28%), Gaps = 79/415 (19%)
Query: 46 FPEIARRKAAHMLKYP--DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA 103
FP I +A + +K+ V+ L + ++ + A+ Q GY
Sbjct: 4 FPSIEDLRARNTMKWTRYGQGVLPLWVAESDFSTCPAVLQAITDA-----VQREAFGYQP 58
Query: 104 EQGEKPLRAAIASTFYK---DLGIEEGDIFVSDGAKCDISRLQIVF---GSNVTMAVQDP 157
+ L A A FY IF + F S V V P
Sbjct: 59 DGSL--LSQATAE-FYADRYGYQARPEWIFPIPDVVRGLYIAIDHFTPAQSKV--IVPTP 113
Query: 158 SYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGF----FPDLSTVA--RTDIIFF 211
+YP F + + D+ I
Sbjct: 114 AYPP-------------FFHLLSATQR----EGIFIDATGGINLHDVEKGFQAGARSILL 156
Query: 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEI-PGAKEVAI 270
C+P NP G E L L A + ++ D +A + D + A V I
Sbjct: 157 CNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCI 216
Query: 271 ETSSFSKYAGF--TGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLA 328
++ SK + G++ + A+ + ++ +GAS + A
Sbjct: 217 TITAPSK--AWNIAGLKCAQIIFSNPSD-------AEHWQQLSPVIKDGASTLGLIAAEA 267
Query: 329 CLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFP----------- 377
G +++ + + K N D ++ K P +
Sbjct: 268 AYR-YGTDFLNQEVAYLKNNHDFLLHEIP---------KRIPGAKITPMQATYLMWIDFR 317
Query: 378 --GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG-HRGNVLEACKRFK 429
+EK V G+ FG G GF R++ F R + EA R
Sbjct: 318 DTTIEG-SPSEFFIEKAKVAMNDGAWFGEDGTGFCRLN-FATSREVLEEAIDRMA 370
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} Length = 423 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 9e-15
Identities = 64/412 (15%), Positives = 113/412 (27%), Gaps = 84/412 (20%)
Query: 52 RKAAHMLKYPDAEVISLGIG-------DTTEPIPEVITSALAKRSYALSTQEGYSGYGAE 104
R+A K +++ G D + + V+ + + Y G
Sbjct: 15 RQAYEAFKARG-LNLNMQRGQPADADFDLSNGLLTVLGAEDVRMDGLDLRN--YPGGV-- 69
Query: 105 QGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQIVFGS--------------NV 150
G RA A L ++ ++ V + + ++ L + F
Sbjct: 70 AGLPSARALFA----GYLDVKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTP 125
Query: 151 TMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRC-TAENGFFPD-LSTVARTDI 208
M V P Y F + G E + +G D + +A TD
Sbjct: 126 KMIVTVPGYD------------RHFLL-LQTLG-FELLTVDMQSDGPDVDAVERLAGTDP 171
Query: 209 ---IFFCSPN--NPTGAAATREQLTRLVQ-FAKDNGSIIVYDSAYA-LYISDDNPRSIFE 261
P NP G + E+ RL A I D AY ++ +++
Sbjct: 172 SVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVN 231
Query: 262 IPGAKEVA------IETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCF 315
A +S SK F G LG+ ++ + I
Sbjct: 232 FVVLARDAGYPDRAFVFASTSKIT-FAGAGLGFVASSEDNI--RWLSKYLGAQSI----- 283
Query: 316 NGASNISQAGGLACL-SPEGFKAVH--EVIGFYKENTDIIVETFNSLGFKVYGGK---NA 369
G + + QA + L G + + E + G
Sbjct: 284 -GPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAE-LGEGGEYATWTL 341
Query: 370 P----YVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEG----FIRVS 413
P ++ + + V V TP P G+ +R++
Sbjct: 342 PKGGYFISLDTAEPVADRVVKLAEAA-GVSLTPAGATYPAGQDPHNRNLRLA 392
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* Length = 391 | Back alignment and structure |
|---|
Score = 72.9 bits (180), Expect = 3e-14
Identities = 70/405 (17%), Positives = 140/405 (34%), Gaps = 79/405 (19%)
Query: 59 KYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTF 118
KY +++ + + D I +L R ++ GY +I +
Sbjct: 28 KYGTNDLLPMWVADMDFKAAPCIIDSLKNR-----LEQEIYGYTTRPDS--YNESIVNWL 80
Query: 119 YK--DLGIEEGDIFVSDGAKCDISRLQIVF---GSNVTMAVQDPSYPAY----------- 162
Y+ + I+ + S G IS L + +Q+P Y +
Sbjct: 81 YRRHNWKIKSEWLIYSPGVIPAISLLINELTKANDKI--MIQEPVYSPFNSVVKNNNREL 138
Query: 163 VDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDL-STVARTDIIFFCSPNNPTGAA 221
+ S + + G + D + D+ + + + C+P+NP G
Sbjct: 139 IISPLQKLENGNYIMD------------------YEDIENKIKDVKLFILCNPHNPVGRV 180
Query: 222 ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNP-RSIFEI-PGAKEVAIETSSFSKYA 279
T+++L +L + I+ D ++ I + + I ++ I + +K
Sbjct: 181 WTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTF 240
Query: 280 GFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNI-SQAGGLACLSPEGFKAV 338
G++ + V+P E + K + +N S A + G +
Sbjct: 241 NIAGLQSSYVVLPDEKDY-------KLLDDAFTRIDIKRNNCFSLVATEASYN-NGESWL 292
Query: 339 HEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFP-------------GRSSWDVF 385
+ + + N D ++ N +N P + V+ P G S ++
Sbjct: 293 ESFLEYLESNIDFAIKYIN---------ENMPKLKVRKPEGTYLLWVDFSALGLSDEELE 343
Query: 386 SEILEKTHVVTTPGSGFGPGGEGFIRVSAFG-HRGNVLEACKRFK 429
S +++K V G+ FG GG G+ R++ R + EA R K
Sbjct: 344 SILVQKGKVALNQGNSFGIGGSGYQRIN-LACPRSMLEEALIRIK 387
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 Length = 390 | Back alignment and structure |
|---|
Score = 70.6 bits (174), Expect = 2e-13
Identities = 70/415 (16%), Positives = 123/415 (29%), Gaps = 99/415 (23%)
Query: 59 KYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTF 118
++ A+++ I D I AL +R G GY + ++ AAIA F
Sbjct: 24 RFGTADLLPFTISDMDFATAPCIIEALNQR-----LMHGVFGYSRWKNDE-FLAAIAHWF 77
Query: 119 YK--DLGIEEGDIFVSDGAKCDISRLQIVF---GSNVTMAVQDPSYPAYVDSSVIMGQTG 173
I+ + +S L + G V + P+Y A
Sbjct: 78 STQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGV--VIHTPAYDA------------ 123
Query: 174 EFQKDAEKYG-KIEYMRCTAENGF----FPDLSTVA---RTDIIFFCSPNNPTGAAATRE 225
F K E + + + L V I+ CSP NPTG T +
Sbjct: 124 -FYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCD 182
Query: 226 QLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEI------PG---------AKEVAI 270
+L + + +G + ISD EI A+
Sbjct: 183 ELEIMADLCERHGVRV---------ISD-------EIHMDMVWGEQPHIPWSNVARGDWA 226
Query: 271 ETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIV--CTCFNGASNISQAGGLA 328
+S SK + + +I + + + S ++ +A
Sbjct: 227 LLTSGSKSFNIPALTGAYGIIENSSSR-------DAYLSALKGRDGLSSPSVLALTAHIA 279
Query: 329 CLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFP----------- 377
+G + + + K+N I + N P + Q P
Sbjct: 280 AYQ-QGAPWLDALRIYLKDNLTYIADKMN---------AAFPELNWQIPQSTYLAWLDLR 329
Query: 378 --GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG-HRGNVLEACKRFK 429
+ ++E+ V PG +G G GF+R++ G R + +
Sbjct: 330 PLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLN-AGCPRSKLEKGVAGLI 383
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} Length = 391 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 6e-13
Identities = 78/438 (17%), Positives = 141/438 (32%), Gaps = 113/438 (25%)
Query: 44 YLFPEIARRKAAHMLKY--PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGY 101
Y F + +R+ + +K+ + + + I + I I +++ ++ + GY
Sbjct: 7 YDFTHVPKRQG-NSIKWGVLKEKELPMWIAEMDFKIAPEIMASMEEK-----LKVAAFGY 60
Query: 102 GAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDISRLQIVF---GSNVTMAVQD 156
+ E A+A +E + G IS + F G + VQ+
Sbjct: 61 ESVPAE--YYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQFTSPGDQI--LVQE 116
Query: 157 PSYPAYVDSSVIMGQTGEFQKDAEKYG-KIEYMRCTAENGF----FPDLSTVARTD---I 208
P Y F E G ++ EN + DL T +
Sbjct: 117 PVYNM-------------FYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRM 163
Query: 209 IFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEI------ 262
+ FC+P+NP G A + E++ R+ + + ++ ISD EI
Sbjct: 164 MVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLL---------ISD-------EIHGDLVL 207
Query: 263 ------------PGAKEVAIETSSFSKYAGFT----GVRLGWTVIPKELLFSDGFPVAKD 306
AK + S SK T + +IP L
Sbjct: 208 TDEDITPAFTVDWDAKNWVVSLISPSK----TFNLAALHAACAIIPNPDLR-------AR 256
Query: 307 FNRIVCTCFNGASNI-SQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYG 365
G N+ + +A EG + E+ ++N E
Sbjct: 257 AEESFFLAGIGEPNLLAIPAAIAAYE-EGHDWLRELKQVLRDNFAYAREFLA-------- 307
Query: 366 GKNAPYVWVQFP-------------GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRV 412
K P V V G ++ D + EKT ++ + G+G+ G F+R+
Sbjct: 308 -KEVPEVKVLDSNASYLAWVDISALGMNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRI 366
Query: 413 SAFG-HRGNVLEACKRFK 429
+ + V++ +R K
Sbjct: 367 N-LACPKELVIDGMQRLK 383
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} Length = 421 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 75/442 (16%), Positives = 131/442 (29%), Gaps = 111/442 (25%)
Query: 44 YLFPEIARRKAAHMLKY----PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYS 99
Y F R K+ + E++ + + D I A+ +E
Sbjct: 38 YDFTTRPDRLNQFTYKWKTSENNPELLQMWVADMDFLPVPEIKEAIINY-----GREHIF 92
Query: 100 GYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDISRLQIVFGSNVTM----- 152
GY + L A+ K D + + DI DG +V ++ +
Sbjct: 93 GYNYFNDD--LYQAVIDWERKEHDYAVVKEDILFIDG---------VVPAISIALQAFSE 141
Query: 153 -----AVQDPSYPAYVDSSVIMGQTGEFQKDAEKYG-KIEYMRCTAENGF----FPDLST 202
+ P Y F + ++ NG F L
Sbjct: 142 KGDAVLINSPVYYP-------------FARTIRLNDHRLVENSLQIINGRFEIDFEQLEK 188
Query: 203 VA---RTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSI 259
I CSP+NP G + L ++ + K +G I+ +SD
Sbjct: 189 DIIDNNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVIL---------VSD------ 233
Query: 260 FEI------PGAKEVAIETSSFSKYAGFT-------------GVRLGWTVIPKELLFSDG 300
EI G ++ T + Y FT G + + +I E L
Sbjct: 234 -EIHQDLALFGNTHHSLNTLD-ASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLR--- 288
Query: 301 FPVAKDFNRIVCTCFNGASNI-SQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL 359
+ F A G + E+ + N ++++ +
Sbjct: 289 ----RKFQYRQLANNQHEVPTVGMIATQAAFQ-YGKPWLEELKTVIEGNIKLVIKELEAK 343
Query: 360 -GFKVYGGKNAP---Y-VWVQF--PGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRV 412
KV P Y VW+ F + + ++ + VV G+ FG G+ F R+
Sbjct: 344 TKIKVM----EPEGTYLVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARL 399
Query: 413 SAFG-HRGNVLEACKRFKHLYK 433
+ + V EA R ++
Sbjct: 400 N-VATPKNTVQEALSRIISVFG 420
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* Length = 399 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 3e-12
Identities = 64/418 (15%), Positives = 114/418 (27%), Gaps = 104/418 (24%)
Query: 59 KYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTF 118
EV+ L + D P + L K E GY E + +
Sbjct: 27 PEVGNEVVPLSVADMEFKNPPELIEGLKKY-----LDETVLGYTGPTEE--YKKTVKKWM 79
Query: 119 YK--DLGIEEGDIFVSDGAKCDISRLQIVF---GSNVTMAVQDPSYPAYVDSSVIMGQTG 173
I+ I + G + F G V + P Y
Sbjct: 80 KDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGV--IIITPVYYP------------ 125
Query: 174 EFQKDAEKYG-KIEYMRCTAENGF----FPDLSTVARTD---IIFFCSPNNPTGAAATRE 225
F + KI ++G+ F L +++ + FCSP+NP G ++
Sbjct: 126 -FFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKD 184
Query: 226 QLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEI------PGAKEVAIETSSFSKYA 279
+L ++ + ++ SD EI PG + ++ + A
Sbjct: 185 ELQKIKDIVLKSDLML---------WSD-------EIHFDLIMPGYEHTVFQSID-EQLA 227
Query: 280 GFT-------------GVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNI-SQAG 325
T G+ + +I + + F +
Sbjct: 228 DKTITFTAPSKTFNIAGMGMSNIIIKNPDIR-------ERFTKSRDATSGMPFTTLGYKA 280
Query: 326 GLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFP-------- 377
C E K + I +N I+ + F N P +
Sbjct: 281 CEICYK-ECGKWLDGCIKVIDKNQRIVKDFFE---------VNHPEIKAPLIEGTYLQWI 330
Query: 378 -----GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG-HRGNVLEACKRFK 429
+ ++ K + G FG GG GF R++ + E+ +R
Sbjct: 331 DFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERIN-LAAPSSVIQESLERLN 387
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* Length = 392 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 5e-12
Identities = 80/444 (18%), Positives = 130/444 (29%), Gaps = 114/444 (25%)
Query: 44 YLFPEIARRKAAHMLKY----PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYS 99
Y F R + H K+ D +++ I D + + A+ ++
Sbjct: 8 YNFQTAPNRLSHHTYKWKETETDPQLLPAWIADMDFEVMPEVKQAIHDY-----AEQLVY 62
Query: 100 GYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDISRLQIVF---GSNVTMAV 154
GY E L A+ ++ DI +G IS F G V +
Sbjct: 63 GYTYASDE--LLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFTKEGEAV--LI 118
Query: 155 QDPSYPAYVDSSVIMGQTGEFQKDAEKYG-KIEYMRCTAENGF----FPDLSTVA---RT 206
P YP F + K+ ENG F L
Sbjct: 119 NSPVYPP-------------FARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVENDV 165
Query: 207 DIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEI---- 262
+ C+P+NP G RE L ++ + + I+ +SD EI
Sbjct: 166 KLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVIL---------VSD-------EIHQDL 209
Query: 263 --------------PGAKEVAIETSSFSKYAGFT----GVRLGWTVIPKELLFSDGFPVA 304
P K+ A+ SS +K T G + + +I L
Sbjct: 210 TLFGHEHVSFNTVSPDFKDFALVLSSATK----TFNIAGTKNSYAIIENPTLC------- 258
Query: 305 KDFNRIVCTCFNGASNI-SQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKV 363
F + + G + + +EN VE F
Sbjct: 259 AQFKHQQLVNNHHEVSSLGYIATETAYR-YGKPWLVALKAVLEENIQFAVEYFA------ 311
Query: 364 YGGKNAPYVWVQFP-------------GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFI 410
+ AP + V P G + +F+ + ++ V+ GS +G GE
Sbjct: 312 ---QEAPRLKVMKPQGTYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDYGSEGELHA 368
Query: 411 RVSAFG-HRGNVLEACKRFKHLYK 433
R++ + V E CKR
Sbjct: 369 RLN-IAAPKSLVEEICKRIVCCLP 391
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 4e-05
Identities = 55/423 (13%), Positives = 121/423 (28%), Gaps = 124/423 (29%)
Query: 44 YLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA 103
+++ + H++ DA +L + T E + ++ + Y +
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM----VQKFVEEVLRINYKFLMS 96
Query: 104 EQGEKPLRAAIASTFYKDLGIEEGDIFVSDG---AKCDISRLQIVFGSNVTMAVQDPSYP 160
+ + ++ + Y IE+ D +D AK ++SRLQ + A+ +
Sbjct: 97 PIKTEQRQPSMMTRMY----IEQRDRLYNDNQVFAKYNVSRLQPY--LKLRQALLELRPA 150
Query: 161 AYVDSSVIMGQTGEFQKDAEKYGK----IEYMR-----CTAENG-FFPDLSTVARTDIIF 210
V +I G G GK ++ C + F+ +L + +
Sbjct: 151 KNV---LIDGVLG--------SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 211 -----FC-------------SPNNPTGAAATREQLTRLVQFAKDNGSIIVYD-------- 244
S N + + +L RL++ ++V
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259
Query: 245 SAYA-----LYISDDNPRSIFEIPGA---KEVAIETSS-----------FSKYAGFTGVR 285
+A+ L + + + + A ++++ S KY
Sbjct: 260 NAFNLSCKILLTTRF--KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 286 LGWTVIPKELLFSDGFPVA--------KD-------FNRIVCTCFNGASNISQAGGLACL 330
L P+E+L P +D + + C S L L
Sbjct: 318 L-----PREVL--TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS----LNVL 366
Query: 331 SPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSWDVFSEILE 390
P ++ + + + + + I + + W ++
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLI-------------WFD----VIKSDVMVVVN 409
Query: 391 KTH 393
K H
Sbjct: 410 KLH 412
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 433 | |||
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 100.0 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 100.0 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 100.0 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 100.0 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 100.0 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 100.0 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 100.0 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 100.0 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 100.0 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 100.0 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 100.0 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 100.0 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 100.0 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 100.0 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 100.0 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 100.0 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 100.0 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 100.0 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 100.0 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 100.0 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 100.0 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 100.0 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 100.0 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 100.0 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 100.0 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 100.0 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 100.0 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 100.0 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 100.0 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 100.0 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 100.0 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 100.0 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 100.0 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 100.0 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 100.0 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 100.0 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 100.0 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 100.0 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 100.0 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 100.0 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 100.0 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 100.0 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 100.0 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 100.0 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 100.0 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 100.0 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 100.0 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 100.0 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 100.0 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 100.0 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 100.0 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 100.0 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 100.0 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 100.0 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 100.0 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 100.0 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 100.0 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 100.0 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 100.0 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 100.0 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 100.0 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 100.0 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 100.0 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 100.0 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 100.0 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 100.0 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 100.0 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 100.0 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 100.0 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 100.0 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 100.0 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 100.0 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 100.0 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 100.0 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 100.0 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 100.0 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 100.0 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 100.0 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 100.0 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 100.0 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 100.0 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 100.0 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 100.0 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 100.0 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 100.0 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 100.0 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 100.0 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 100.0 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 100.0 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 100.0 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 100.0 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 100.0 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 100.0 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 100.0 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 100.0 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 100.0 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 100.0 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 100.0 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 100.0 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 100.0 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 100.0 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 100.0 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 100.0 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.98 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.98 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.98 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.98 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.98 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.98 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.98 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.97 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.97 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.97 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.97 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.97 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.97 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.97 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.97 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.97 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.97 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.97 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.97 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.97 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.97 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.97 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.97 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.97 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.97 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.97 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.97 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.97 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.97 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.97 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.97 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.97 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.97 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.97 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.96 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.96 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.96 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.96 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.96 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.96 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.96 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.96 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.96 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.96 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.96 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.96 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.96 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.96 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.96 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.96 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.96 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.96 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.95 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.95 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.95 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.95 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.95 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.95 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.95 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.95 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.95 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.95 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.95 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.95 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.95 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.95 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.95 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.95 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.95 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.95 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.95 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.95 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.94 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.94 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.94 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.94 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.94 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.94 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.94 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.94 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.94 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.94 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.94 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.94 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.94 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.94 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.94 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.93 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.93 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.93 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.92 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.92 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.92 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.91 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.91 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 99.85 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.91 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.91 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.91 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.91 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.91 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.91 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.9 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.9 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.9 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.9 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.9 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.89 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.89 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.89 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.87 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.87 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.87 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.87 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.86 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.86 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.86 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.85 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.85 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.85 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.84 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.8 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.8 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.77 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 99.77 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.76 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 99.74 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.64 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.61 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.44 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.31 | |
| 4ham_A | 134 | LMO2241 protein; structural genomics, PSI-biology, | 98.29 | |
| 2ek5_A | 129 | Predicted transcriptional regulators; helix-turn-h | 98.13 | |
| 3ic7_A | 126 | Putative transcriptional regulator; helix-turn-hel | 98.09 | |
| 3neu_A | 125 | LIN1836 protein; structural genomics, PSI-2, prote | 98.0 | |
| 3tqn_A | 113 | Transcriptional regulator, GNTR family; regulatory | 97.97 | |
| 3by6_A | 126 | Predicted transcriptional regulator; structural ge | 97.88 | |
| 1hw1_A | 239 | FADR, fatty acid metabolism regulator protein; hel | 97.76 | |
| 1v4r_A | 102 | Transcriptional repressor; helix-turn-helix, winge | 97.72 | |
| 2di3_A | 239 | Bacterial regulatory proteins, GNTR family; helix- | 97.69 | |
| 2ra5_A | 247 | Putative transcriptional regulator; beta structure | 97.68 | |
| 3edp_A | 236 | LIN2111 protein; APC88337, listeria innocua CLIP11 | 97.58 | |
| 2wv0_A | 243 | YVOA, HTH-type transcriptional repressor YVOA; DNA | 97.46 | |
| 3eet_A | 272 | Putative GNTR-family transcriptional regulator; st | 97.44 | |
| 3bwg_A | 239 | Uncharacterized HTH-type transcriptional regulato; | 97.4 | |
| 3ihu_A | 222 | Transcriptional regulator, GNTR family; YP_298823. | 97.24 | |
| 3f8m_A | 248 | GNTR-family protein transcriptional regulator; PHN | 97.1 | |
| 2b0l_A | 102 | GTP-sensing transcriptional pleiotropic repressor; | 97.06 | |
| 3sxy_A | 218 | Transcriptional regulator, GNTR family; transcript | 96.97 | |
| 2hs5_A | 239 | Putative transcriptional regulator GNTR; APC6050, | 96.74 | |
| 3c7j_A | 237 | Transcriptional regulator, GNTR family; structural | 96.41 | |
| 3e3m_A | 355 | Transcriptional regulator, LACI family; structural | 93.25 | |
| 2gqq_A | 163 | Leucine-responsive regulatory protein; helix-turn- | 89.06 | |
| 3kjx_A | 344 | Transcriptional regulator, LACI family; LACL famil | 87.82 |
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-56 Score=433.20 Aligned_cols=395 Identities=84% Similarity=1.390 Sum_probs=339.2
Q ss_pred cccCCCCCCcHHHHHHHHHHHhcCCCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHH
Q 045431 37 LGKLQAGYLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIAS 116 (433)
Q Consensus 37 ~~~l~~g~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~ 116 (433)
+.+++..|.+..+..+......++++.++|+|+.|+++++.|+.+.+++.+++.+..+..+...|++..|..+||+++++
T Consensus 30 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~ 109 (432)
T 3ei9_A 30 MSKLQAGYLFPEIARRRSAHLLKYPDAQVISLGIGDTTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAK 109 (432)
T ss_dssp HHHCCSSCHHHHHHHHHHHHHHHCTTCCCEECSSCCCCSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHH
T ss_pred HHhCCCCccHHHHHHHHHhhhhcCCCCCeEEccCCCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHH
Confidence 44556568888887777777777777789999999999999999999999999876544556789888899999999999
Q ss_pred HHhccCCCCCCcEEEcCChHHHHHHHHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCc
Q 045431 117 TFYKDLGIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGF 196 (433)
Q Consensus 117 ~l~~~~~~~~~~i~~~~G~~~al~~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (433)
|+.+++++++++|++|+|+++++.++..++++||.|++++|+|+++...++..|..+++...+..+.+++.++.+.++++
T Consensus 110 ~~~~~~~~~~~~i~~t~G~~~al~~l~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (432)
T 3ei9_A 110 TFYGGLGIGDDDVFVSDGAKCDISRLQVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGF 189 (432)
T ss_dssp HHHTTTTCCGGGEEEESCHHHHHHHHHHHHCTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTT
T ss_pred HHHccCCCCcceEEECCChHHHHHHHHHHcCCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCC
Confidence 99888888999999999999999988888899999999999999999999999976655444444457888888876677
Q ss_pred ccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccc
Q 045431 197 FPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFS 276 (433)
Q Consensus 197 ~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~s 276 (433)
..++++.+++++|++++||||||.+++.+++++|+++|++||++||+||+|+++.+++.+.++..+++..+++++++|||
T Consensus 190 ~~~l~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 269 (432)
T 3ei9_A 190 FPDLSTVGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFS 269 (432)
T ss_dssp SCCGGGCCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESH
T ss_pred cCChhhCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecch
Confidence 77777777899999999999999999999999999999999999999999999888766666777655567889999999
Q ss_pred ccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHH
Q 045431 277 KYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETF 356 (433)
Q Consensus 277 K~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l 356 (433)
|++|++|+|+||++++++++......+.+.+.+.......+++.++|.++.+++.+.+.+++++++++++++++.+.+.|
T Consensus 270 K~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 349 (432)
T 3ei9_A 270 NYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTF 349 (432)
T ss_dssp HHHCTTTTCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCcccceEEEEEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999884333333346676666666677899999999999985555778999999999999999999
Q ss_pred hhcCCeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHh
Q 045431 357 NSLGFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHL 431 (433)
Q Consensus 357 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~ 431 (433)
+++|+.+..+.+++|+|+++++.+..++...+++++||.+.||..|++.+++++||+++.+++++++++++|++-
T Consensus 350 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~~~~~e~l~~~l~rl~~~ 424 (432)
T 3ei9_A 350 TSLGYDVYGGKNAPYVWVHFPNQSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENILEACRRFKQL 424 (432)
T ss_dssp HHTTCCEEECSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHH
T ss_pred HHCCceecCCCcceEEEEECCCCCHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEecCCHHHHHHHHHHHHHH
Confidence 999998888778999999999767788888888888999999999987778999999988999999999999874
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-54 Score=424.36 Aligned_cols=412 Identities=64% Similarity=1.122 Sum_probs=338.0
Q ss_pred ChhhHHHHHhccccccc---cccCCCCCCcHHHHHHHHHHHhcCCCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCC
Q 045431 20 PQEEKIAYKTKVSRNGN---LGKLQAGYLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQE 96 (433)
Q Consensus 20 Ps~r~la~~~~vs~~t~---~~~l~~g~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~ 96 (433)
...|+++..+++++.+. +++++..|.+..+..+.......+++.++|+|+.|+++++.|+.+.+++.+++.+.....
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~ 102 (449)
T 3qgu_A 23 AVVQAVAQRAGTIDVQRNENFGKLRAGYLFPEIARRRKAHQEKNPDAKIISLGIGDTTEPLPKYIADAMAKAAAGLATRE 102 (449)
T ss_dssp ----------CCCCCCCCHHHHHCCSCCHHHHHHHHHHHHHHHCTTCCCEECSSCCCCCCCCHHHHHHHHHHHHGGGGSC
T ss_pred cccchhhccccccchhhhHHHHhCCCcchHHHHHHHHHHHHhhCCCCCEEEeeCCCCCCCCCHHHHHHHHHHHHhhcccc
Confidence 34788899999988774 455566677777777766666667788899999999999999999999999988654334
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHHHHhcCCCCEEEEeCCCChhhhhhHHHhCCccccc
Q 045431 97 GYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQ 176 (433)
Q Consensus 97 ~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~ 176 (433)
....|++..|.++||+++++|+.+++++++++|++|+|+++++.++..++++||+|++++|+|+++...++..|..+++.
T Consensus 103 ~~~~y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~~al~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~ 182 (449)
T 3qgu_A 103 GYSGYGAEQGQGALREAVASTFYGHAGRAADEIFISDGSKCDIARIQMMFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHN 182 (449)
T ss_dssp CCCCSTTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHHHHHHHCSSSCEEEEESCCTHHHHHHHHHTCSCCBC
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCHHHHHHHHHHHhCCCCEEEEcCCCChhHHHHHHHcCCccccc
Confidence 55689888999999999999987666778899999999999999887788999999999999999999999999654321
Q ss_pred ccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-
Q 045431 177 KDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN- 255 (433)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~- 255 (433)
...|.+++.++.+.++++..++++.+++++|++++||||||.+++.+++++|+++|++||++||+||+|+++.+++.
T Consensus 183 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~ 260 (449)
T 3qgu_A 183 --GTGFDGIEYMVCNPDNHFFPDLSKAKRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDC 260 (449)
T ss_dssp --SSSBTTEEEEECCGGGTTCCCGGGCCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTS
T ss_pred --ccccceeEEEecccccCCcCChhHcCCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCC
Confidence 12233488899887777777776667899999999999999999999999999999999999999999999888754
Q ss_pred CCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh
Q 045431 256 PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF 335 (433)
Q Consensus 256 ~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~ 335 (433)
+.++..++...+++++++||||++|++|+|+||++++++++......+...+.........+++.++|.++.+++.+...
T Consensus 261 ~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~ 340 (449)
T 3qgu_A 261 PKTIYEIPGADEVAIETCSFSKYAGFTGVRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGL 340 (449)
T ss_dssp CSSGGGSTTGGGTEEEEEECSGGGTCTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHH
T ss_pred CCCHhhccCCCCcEEEEecchhhcCCccceeEEEecCHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCH
Confidence 55676765546788999999999999999999999999886321222223555556666667899999999999986455
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec
Q 045431 336 KAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF 415 (433)
Q Consensus 336 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~ 415 (433)
+++++++++++++++.+.+.|+++|+.+..+.+++|+|+.+++.+..++...+++++||.+.||..|++.+++++||+++
T Consensus 341 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~ 420 (449)
T 3qgu_A 341 KEMNAMIKFYKENAQILKTTFTEMGFSVYGGDDAPYIWVGFPGKPSWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAF 420 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCEEESSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCeeeCCCCeeEEEEECCCCCHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEec
Confidence 77899999999999999999999999988888899999999866778888888887899999999998777899999988
Q ss_pred cChhHHHHHHHHHHHhhC
Q 045431 416 GHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 416 ~~~~~l~~~l~~l~~~l~ 433 (433)
.+++++++++++|+++++
T Consensus 421 ~~~e~i~~~l~~l~~~~~ 438 (449)
T 3qgu_A 421 GSRENILEAVRRFKEAYG 438 (449)
T ss_dssp SCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 899999999999998864
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-53 Score=413.27 Aligned_cols=382 Identities=15% Similarity=0.165 Sum_probs=300.1
Q ss_pred ccCCChhhHHHHHhccccccc---cccCCCCCCcHHHHHHHHHHHhcCCCCceEEecCCCC-CCCChHHH--HHHHHHHH
Q 045431 16 CVAAPQEEKIAYKTKVSRNGN---LGKLQAGYLFPEIARRKAAHMLKYPDAEVISLGIGDT-TEPIPEVI--TSALAKRS 89 (433)
Q Consensus 16 g~~LPs~r~la~~~~vs~~t~---~~~l~~g~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~-~~~~~~~~--~~a~~~~~ 89 (433)
|+||||+|+||++|+||++|+ |+++..||+.......... . . .+++|+|+.|.+ +++.|+.+ .+++.+.+
T Consensus 1 g~~lps~r~la~~l~vs~~tv~~a~~~l~~~~~~~~~~~~~~~-~-~--~~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~ 76 (430)
T 2x5f_A 1 GAMNPLAQSLNEQLQQSNATAFAMLSDLGQNMFYPKGILSQSA-E-A--KSTTYNATIGMATNKDGKMFASSLDAMFNDL 76 (430)
T ss_dssp --CCHHHHHHHHHHHHHCHHHHHHCCHHHHHCCCCCHHHHHHH-H-T--TTCSEECCCSSCEETTEECCCHHHHTTBSSC
T ss_pred CCCChhhhhHHHHHHhhhhHHHHHHhhhhhhccCchHHHHHHH-h-c--CCCcEEeeeeeccCCCCchhhHHHHHHHHhc
Confidence 789999999999999999996 5555456654311111111 1 1 346899999999 77766665 56555544
Q ss_pred hhcccCCCCCCCCCCCCCHHHHHHHHHHHhc-cCCCCCCc---EEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhh
Q 045431 90 YALSTQEGYSGYGAEQGEKPLRAAIASTFYK-DLGIEEGD---IFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVD 164 (433)
Q Consensus 90 ~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~-~~~~~~~~---i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~ 164 (433)
.. .....|++..|..+||+++|+++.+ ++++++++ |++|+|+++++.+ +..++++||+|++++|+|+++..
T Consensus 77 ~~----~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~ 152 (430)
T 2x5f_A 77 TP----DEIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFVNQDDTILLPEHNWGNYKL 152 (430)
T ss_dssp CG----GGTSSCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHH
T ss_pred Cc----ccccccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEEcCCchHHHHHHHHHHhCCCCEEEEcCCcCccHHH
Confidence 32 1356898888999999999999975 55678889 9999999999997 57778999999999999999998
Q ss_pred hHHH-hCCcccccccccccceEEEeecCccCCcccCCCC-----CC---CccEEEEcCCCCccccCCCHHHHHHHHHHHH
Q 045431 165 SSVI-MGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VA---RTDIIFFCSPNNPTGAAATREQLTRLVQFAK 235 (433)
Q Consensus 165 ~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~ 235 (433)
.++. .| .+++.++.+.++ +..+++. .. +++++++++||||||.+++.+++++|+++|+
T Consensus 153 ~~~~~~g------------~~~~~~~~~~~~-~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~ 219 (430)
T 2x5f_A 153 VFNTRNG------------ANLQTYPIFDKD-GHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIK 219 (430)
T ss_dssp HHTTTTC------------CEEEEECCBCTT-SCBCSHHHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHH
T ss_pred HHHHhcC------------CeEEEEeccCcc-CCcCHHHHHHHHHhcCCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHH
Confidence 8887 77 477788876532 2233221 12 7889999999999999999999999999999
Q ss_pred H-----cCCEEEEeccccccccCCC-CCccc-ccCCCCcc---eEEEecccccccccccceeeeec---cccccccCCcc
Q 045431 236 D-----NGSIIVYDSAYALYISDDN-PRSIF-EIPGAKEV---AIETSSFSKYAGFTGVRLGWTVI---PKELLFSDGFP 302 (433)
Q Consensus 236 ~-----~~~~li~De~~~~~~~~~~-~~~~~-~~~~~~~~---vi~i~S~sK~~~~~G~r~G~l~~---~~~~~~~~~~~ 302 (433)
+ ||++||+||+|+++.+++. +.++. .+++..++ +++++||||.+|++|+|+||+++ +++++
T Consensus 220 ~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~------ 293 (430)
T 2x5f_A 220 ALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTK------ 293 (430)
T ss_dssp HHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGCCEEEEEBCCCHHHH------
T ss_pred hhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCCCCCCCeEEEEEecCCHHHH------
Confidence 9 9999999999999887754 34554 55443567 89999999999989999999999 87774
Q ss_pred hhHHHHHHHhh----ccCCCcHHHHHHHHHhcC-cCCh-hHHHHHHHHHHHHHHHHHHHHh----hcCCeeecCCCccEE
Q 045431 303 VAKDFNRIVCT----CFNGASNISQAGGLACLS-PEGF-KAVHEVIGFYKENTDIIVETFN----SLGFKVYGGKNAPYV 372 (433)
Q Consensus 303 ~~~~~~~~~~~----~~~~~~~~~q~~~~~~l~-~~~~-~~~~~~~~~~~~~~~~l~~~l~----~~g~~~~~~~~g~~~ 372 (433)
+.+...... ...+++.+.|.++.++++ +..+ +++++++++++++++.+.+.|+ +.|+.+..+.+|+|+
T Consensus 294 --~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~ 371 (430)
T 2x5f_A 294 --EVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQAYDFNSGYFM 371 (430)
T ss_dssp --HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTTEEECCCCBSSEE
T ss_pred --HHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceeeCCCceEEE
Confidence 555554443 456689999999999997 6522 4456699999999999999998 668888888888999
Q ss_pred EEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec-cChhHHHHHHHHHHHhh
Q 045431 373 WVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF-GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 373 ~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~-~~~~~l~~~l~~l~~~l 432 (433)
|+++++.+..++...+++++||.+.|| +++++||++. .+++++++++++|++++
T Consensus 372 ~~~~~~~~~~~~~~~l~~~~gi~v~~g------~~~~iRis~~~~~~e~i~~~~~~l~~~l 426 (430)
T 2x5f_A 372 AIKVHDVDPEALRKHLIDKYSIGVIAL------NATDIRIAFSCVEKDDIPHVFDSIAKAI 426 (430)
T ss_dssp EEEESSSCHHHHHHHHHHHHCEECEEC------SSSEEEEEGGGSCGGGHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHhCCEEEecC------CCCeEEEEEecCCHHHHHHHHHHHHHHH
Confidence 999985567778888877469999997 3578999987 78999999999999875
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-50 Score=392.69 Aligned_cols=383 Identities=43% Similarity=0.772 Sum_probs=302.0
Q ss_pred ccccccCCCCCCcHHHHHHHHHHHhcCCCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHH
Q 045431 34 NGNLGKLQAGYLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAA 113 (433)
Q Consensus 34 ~t~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ 113 (433)
++.+.++...|.+..+.++......++++.++|+|+.|++++++|+.+.+++.+.+...........|++..|.++||++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ 83 (400)
T 3asa_A 4 NPHFVSLTKNYLFADLQKRVAQFRLENPQHTVINLSIGDTTQPLNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQK 83 (400)
T ss_dssp CHHHHTCCCCCHHHHHHHHHHHHHHHCTTSCCEECSSCCCCCCCCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHH
T ss_pred chhhhccCCcccHHHHHHHHHHhhhhcCCCceEeccCCCCCCCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHH
Confidence 33344444446666666665555555667789999999998888999999999988764322245679878899999999
Q ss_pred HHHHHhccCCCCCCcEEEcCChHHHHHHHHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccce-EEEeecCc
Q 045431 114 IASTFYKDLGIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGK-IEYMRCTA 192 (433)
Q Consensus 114 la~~l~~~~~~~~~~i~~~~G~~~al~~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~ 192 (433)
+++++..++ +++++|++|+|+++++.++..++++||+|++++|+|+++...++..|. + ++.++.++
T Consensus 84 la~~l~~g~-~~~~~v~~~~G~~~al~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~------------~~~~~~~~~~ 150 (400)
T 3asa_A 84 LSEDFYRGF-VDAKEIFISDGAKVDLFRLLSFFGPNQTVAIQDPSYPAYLDIARLTGA------------KEIIALPCLQ 150 (400)
T ss_dssp HHHTTSTTS-SCGGGEEEESCHHHHHHHHHHHHCSSCEEEEEESCCHHHHHHHHHTTC------------SEEEEEECCG
T ss_pred HHHHHHcCC-CCHHHEEEccChHHHHHHHHHHcCCCCEEEECCCCcHHHHHHHHHcCC------------cceEecccch
Confidence 999964222 788999999999999998767789999999999999999988888883 5 77888876
Q ss_pred cCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEE
Q 045431 193 ENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIE 271 (433)
Q Consensus 193 ~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~ 271 (433)
++++..++++.+++++|++++||||||.++|.+++++|+++|+++|++||+||+|+++.+++. +.++..++...+++++
T Consensus 151 ~~~~~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~ 230 (400)
T 3asa_A 151 ENAFFPEFPEDTHIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIE 230 (400)
T ss_dssp GGTTCCCCCTTCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEE
T ss_pred hcCcccChhhccCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEE
Confidence 556666665546789999999999999999999999999999999999999999998877654 4556666433467899
Q ss_pred EecccccccccccceeeeeccccccccCCcchhHHHHH-HHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHH
Q 045431 272 TSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNR-IVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTD 350 (433)
Q Consensus 272 i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 350 (433)
++||||++|++|+|+||+++++++....... ...+.. .......+.+.++|.++.+++++. +++++++.++++++
T Consensus 231 ~~s~sK~~g~~GlriG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~ 306 (400)
T 3asa_A 231 INSFSKPLGFAGIRLGWTVIPQELTYADGHF-VIQDWERFLSTTFNGASIPAQEAGVAGLSIL---PQLEAIHYYRENSD 306 (400)
T ss_dssp EEECCGGGTTTTCCCEEEECCTTCBCTTSCB-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHT---TTCHHHHHHHHHHH
T ss_pred EecchhhcCCcchheeEEeeChhhccchhhh-HHHHHHHHhccCccCCChHHHHHHHHHhCcH---HHHHHHHHHHHHHH
Confidence 9999999999999999999998872100000 022222 222333458899999988888754 45788899999999
Q ss_pred HHHHHHhhcCCeeecCCCccEEEEE-CC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHH
Q 045431 351 IIVETFNSLGFKVYGGKNAPYVWVQ-FP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRF 428 (433)
Q Consensus 351 ~l~~~l~~~g~~~~~~~~g~~~~~~-~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l 428 (433)
.+.+.|++.|+.+..+.+|+|+|++ ++ +.+..++...+++++||.+.||..|+..+++++||+++.+++++++++++|
T Consensus 307 ~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis~~~~~e~i~~~l~~l 386 (400)
T 3asa_A 307 LLRKALLATGFEVFGGEHAPYLWVKPTQANISDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFSSLGKREDILAACERL 386 (400)
T ss_dssp HHHHHHHHTTCEEEECSSSSEEEEECCCTTCCTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEECCSCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeeeCCCCceEEEEeccCCCCCHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEEeeCCHHHHHHHHHHH
Confidence 9999999989988877789999999 87 345556777887777999999998876567899999878999999999999
Q ss_pred HHhhC
Q 045431 429 KHLYK 433 (433)
Q Consensus 429 ~~~l~ 433 (433)
+++++
T Consensus 387 ~~~~~ 391 (400)
T 3asa_A 387 QMAPA 391 (400)
T ss_dssp HC---
T ss_pred HHHHH
Confidence 88763
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-50 Score=386.63 Aligned_cols=342 Identities=24% Similarity=0.371 Sum_probs=287.6
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDI 139 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~al 139 (433)
++++|+|+.|+|+++.|+.+.+++.+.+.. ....|++..|.++||+++++|+.+ ++.+++++|++|+|+++++
T Consensus 30 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al 104 (385)
T 1b5p_A 30 GVDLVALTAGEPDFDTPEHVKEAARRALAQ-----GKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQAL 104 (385)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHHT-----TCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHH
T ss_pred CCCEEEecCCCCCCCCCHHHHHHHHHHHhc-----CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHH
Confidence 456899999999888889999999888753 235788788999999999999975 5567889999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCC---CC--CCCccEEEEcC
Q 045431 140 SR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDL---ST--VARTDIIFFCS 213 (433)
Q Consensus 140 ~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~i~l~~ 213 (433)
.+ +..++++||+|++++|+|+.+...++..| .+++.++.++++++..++ ++ .+++++|++++
T Consensus 105 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~ 172 (385)
T 1b5p_A 105 FNLFQAILDPGDEVIVLSPYWVSYPEMVRFAG------------GVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNS 172 (385)
T ss_dssp HHHHHHHCCTTCEEEEEESCCTHHHHHHHHTT------------CEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEES
T ss_pred HHHHHHhcCCCCEEEEcCCCchhHHHHHHHcC------------CEEEEeecCcccCCCCCHHHHHHhcCCCCEEEEEeC
Confidence 97 57788999999999999999999999888 478888887533444332 22 25688999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccc
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPK 293 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~ 293 (433)
||||||.++|.+++++|+++|++||++||+||+|+++.+++.+.++.+++. +++++++||||++|++|+|+||+++++
T Consensus 173 p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~--~~~i~~~s~SK~~~~~G~RiG~~~~~~ 250 (385)
T 1b5p_A 173 PNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAP--EHTLTVNGAAKAFAMTGWRIGYACGPK 250 (385)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCT--TTEEEEEESTTTTTCGGGCCEEEECCH
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCC--CCEEEEEechhhcCCcccceEEEEeCH
Confidence 999999999999999999999999999999999999887654445666643 689999999999999999999999998
Q ss_pred cccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcC--ChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccE
Q 045431 294 ELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPE--GFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPY 371 (433)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~ 371 (433)
+++ +.+.........+++.+.|.++.++++.. +.+++++.+++++++++.+.+.|+++|+.+..+.+++|
T Consensus 251 ~~~--------~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 322 (385)
T 1b5p_A 251 EVI--------KAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGAFY 322 (385)
T ss_dssp HHH--------HHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSBTTE
T ss_pred HHH--------HHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCeeEE
Confidence 874 66666655555668899999988888641 24678899999999999999999988888888888999
Q ss_pred EEEECC--CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 372 VWVQFP--GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 372 ~~~~~~--~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
+|+.++ +.+..++...++ ++||.+.||..|+. ++++||+++.+++++++++++|+++++
T Consensus 323 ~~~~~~~~~~~~~~l~~~l~-~~gv~v~~g~~f~~--~~~iRis~~~~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 323 VLMDTSPIAPDEVRAAERLL-EAGVAVVPGTDFAA--FGHVRLSYATSEENLRKALERFARVLG 383 (385)
T ss_dssp EEEECTTTCSSHHHHHHHHH-HTTEECEESGGGTC--TTEEEEECCSCHHHHHHHHHHGGGGC-
T ss_pred EEEecCCCCCCHHHHHHHHH-HCCeEEecccccCC--CCeEEEEecCCHHHHHHHHHHHHHHHh
Confidence 999996 446677777777 66999999999865 679999998899999999999988763
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-47 Score=371.05 Aligned_cols=341 Identities=25% Similarity=0.400 Sum_probs=286.1
Q ss_pred CCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHH
Q 045431 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCD 138 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~a 138 (433)
+++++|+|+.|+++++.|+.+.+++.+.+.+ ....|++..|..++|+++++++.+ ++.+++++|++|+|++++
T Consensus 29 ~g~~~i~l~~g~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~a 103 (391)
T 3h14_A 29 AGRRIIHMEVGQPGTGAPRGAVEALAKSLET-----DALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGG 103 (391)
T ss_dssp TTCCCEECCCSSCSSCSCHHHHHHHHHHHC---------------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHH
T ss_pred cCCCeEEccCCCCCCCCCHHHHHHHHHHHhc-----CCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHH
Confidence 4567999999999998899999999998863 346788888999999999999975 666889999999999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCC---CCCCCccEEEEcCC
Q 045431 139 ISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDL---STVARTDIIFFCSP 214 (433)
Q Consensus 139 l~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~l~~p 214 (433)
+.+ +..++++||+|++++|+|+++...++..| .+++.++.+.++++..++ ++. ++++|++++|
T Consensus 104 l~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~-~~~~v~i~~p 170 (391)
T 3h14_A 104 FLLAFTALFDSGDRVGIGAPGYPSYRQILRALG------------LVPVDLPTAPENRLQPVPADFAGL-DLAGLMVASP 170 (391)
T ss_dssp HHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTT------------CEEEEEECCGGGTTSCCHHHHTTS-CCSEEEEESS
T ss_pred HHHHHHHhcCCCCEEEEcCCCCccHHHHHHHcC------------CEEEEeecCcccCCCCCHHHHHhc-CCeEEEECCC
Confidence 997 57788999999999999999999999988 488889988765554443 333 7899999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecccc
Q 045431 215 NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKE 294 (433)
Q Consensus 215 ~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~ 294 (433)
|||||.+++.+++++|+++|++||+++|+||+|+++.+++.+.+...+ .+++++++|+||.+|++|+|+||++++++
T Consensus 171 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~---~~~~i~~~s~sK~~g~~G~r~G~~~~~~~ 247 (391)
T 3h14_A 171 ANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALEL---TDECYVINSFSKYFSMTGWRVGWMVVPED 247 (391)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGT---CSSSEEEEESSSTTCCTTSCCEEEECCGG
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhc---CCCEEEEEechhccCCccceeEEEEeCHH
Confidence 999999999999999999999999999999999998887655555444 45789999999999999999999999988
Q ss_pred ccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCee-ecCCCccEEE
Q 045431 295 LLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKV-YGGKNAPYVW 373 (433)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~-~~~~~g~~~~ 373 (433)
++ +.+.........+++.+.|.++.++++ ..+++++.+++++++++.+.+.|+++++.. ..+.+++++|
T Consensus 248 ~~--------~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 317 (391)
T 3h14_A 248 QV--------RVVERIAQNMFICAPHASQVAALAALD--CDAELQANLDVYKANRKLMLERLPKAGFTRIAPPDGAFYVY 317 (391)
T ss_dssp GH--------HHHHHHHHHTTCCCCHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCCCBTTEEE
T ss_pred HH--------HHHHHHHhhhccCCCHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCeeEEEE
Confidence 85 667766666667789999998888887 457889999999999999999999987654 5677789999
Q ss_pred EECC--CCChHHHHHHHHHcCCeEecCCCCCCC-CCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 374 VQFP--GRSSWDVFSEILEKTHVVTTPGSGFGP-GGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 374 ~~~~--~~~~~~~~~~l~~~~gi~v~~g~~f~~-~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+.++ +.+..++...+++++||.+.||..|+. .+++++||++..+++++++++++|++++
T Consensus 318 ~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~~ 379 (391)
T 3h14_A 318 ADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYARATADIEEGLDRLEAFM 379 (391)
T ss_dssp EECTTTCSCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred EecCccCCCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 9997 456778888888777999999999976 4578999999889999999999999875
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-48 Score=383.10 Aligned_cols=346 Identities=20% Similarity=0.300 Sum_probs=286.0
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDI 139 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~al 139 (433)
+.++|+|+.|.|++++|+.+.+++.+++.. .....|++..|.++||+++++++.+ +.++++++|++|+|+++++
T Consensus 56 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~----~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al 131 (447)
T 3b46_A 56 GRELINLGQGFFSYSPPQFAIKEAQKALDI----PMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGI 131 (447)
T ss_dssp TSCCEECCCCSCSSCCCHHHHHHHHHHTTS----GGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHH
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHHhC----cCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHH
Confidence 457999999999988899999999998864 1346798888999999999999976 5556788999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccC----------CcccCC---CC--C
Q 045431 140 SR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAEN----------GFFPDL---ST--V 203 (433)
Q Consensus 140 ~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~---~~--~ 203 (433)
.+ +..++++||+|++++|+|+++...++..| .+++.++.++++ ++..++ ++ .
T Consensus 132 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~ 199 (447)
T 3b46_A 132 LSCLMGLLNAGDEVIVFEPFFDQYIPNIELCG------------GKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAIT 199 (447)
T ss_dssp HHHHHHHCCTTCEEEEEESCCTTHHHHHHHTT------------CEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCC
T ss_pred HHHHHHHcCCCCEEEEeCCCchhHHHHHHHcC------------CEEEEEeCCCccccccccccccCcccCHHHHHHhhc
Confidence 97 67788999999999999999999999888 467777765431 222332 22 2
Q ss_pred CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCccccc-CCCCcceEEEeccccccccc
Q 045431 204 ARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEI-PGAKEVAIETSSFSKYAGFT 282 (433)
Q Consensus 204 ~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~-~~~~~~vi~i~S~sK~~~~~ 282 (433)
+++++|++++||||||.++|.+++++|+++|++||++||+||+|.++.+++.+.++.++ ++..+++++++|+||++|++
T Consensus 200 ~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~ 279 (447)
T 3b46_A 200 SKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAAT 279 (447)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCT
T ss_pred cCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCc
Confidence 57899999999999999999999999999999999999999999998887644556555 22246789999999999999
Q ss_pred ccceeeeec-cccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCC-hhHHHHHHHHHHHHHHHHHHHHhhcC
Q 045431 283 GVRLGWTVI-PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEG-FKAVHEVIGFYKENTDIIVETFNSLG 360 (433)
Q Consensus 283 G~r~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~g 360 (433)
|+|+||+++ +++++ +.+.........+.+.+.|.++.++|+... ..++++++++++++++.+.+.|+++|
T Consensus 280 G~riG~~~~~~~~l~--------~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 351 (447)
T 3b46_A 280 GWRIGWVLSLNAELL--------SYAAKAHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDELG 351 (447)
T ss_dssp TSCCEEEECSCHHHH--------HHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhEEEEeCCHHHH--------HHHHHHHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 999999999 87775 666655555556678999998888887432 25688999999999999999999989
Q ss_pred CeeecCCCccEEEEECCCC----------------ChHHHHHHHHHcCCeEecCCCCCCCC-----CCCeEEEeeccChh
Q 045431 361 FKVYGGKNAPYVWVQFPGR----------------SSWDVFSEILEKTHVVTTPGSGFGPG-----GEGFIRVSAFGHRG 419 (433)
Q Consensus 361 ~~~~~~~~g~~~~~~~~~~----------------~~~~~~~~l~~~~gi~v~~g~~f~~~-----~~~~iRi~~~~~~~ 419 (433)
+.+..+.+|+|+|++++.. +..++...+++++||.+.||..|+.. +++++||++..+++
T Consensus 352 ~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~~~~e 431 (447)
T 3b46_A 352 LPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCKDDA 431 (447)
T ss_dssp CCEECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECCSCHH
T ss_pred CeecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEeCCHH
Confidence 9888888899999999742 34467777777779999999988643 26899999988999
Q ss_pred HHHHHHHHHHHh
Q 045431 420 NVLEACKRFKHL 431 (433)
Q Consensus 420 ~l~~~l~~l~~~ 431 (433)
++++++++|+++
T Consensus 432 ~l~~~~~~l~~~ 443 (447)
T 3b46_A 432 YLENAVERLKLL 443 (447)
T ss_dssp HHHHHHHHGGGG
T ss_pred HHHHHHHHHHHH
Confidence 999999999874
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-48 Score=373.89 Aligned_cols=347 Identities=24% Similarity=0.380 Sum_probs=289.7
Q ss_pred CCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCC-CcEEEcCChHH
Q 045431 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEE-GDIFVSDGAKC 137 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~-~~i~~~~G~~~ 137 (433)
++.++|+|+.|.++++.++.+.+++.+.+... ....|++..|..+||+++++++.+ +..+++ ++|++|+|+++
T Consensus 45 ~g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~----~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~ 120 (404)
T 2o1b_A 45 GPLPLINMAVGIPDGPTPQGIIDHFQKALTIP----ENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKN 120 (404)
T ss_dssp CSSCCEECCCCSCSSCCCHHHHHHHHHHTTCH----HHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHH
T ss_pred CCCCEEecCCcCCCCCCCHHHHHHHHHHHhCC----CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHH
Confidence 34568999999998888899999999987531 134787778999999999999976 554565 89999999999
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCC-----CCccEEEE
Q 045431 138 DISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV-----ARTDIIFF 211 (433)
Q Consensus 138 al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~l 211 (433)
++.+ +..++++||+|++++|+|+++...++..| .+++.++.+. +++..+++.. +++++|++
T Consensus 121 al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g------------~~~~~v~~~~-~~~~~d~~~l~~~l~~~~~~v~l 187 (404)
T 2o1b_A 121 GLVAVPTCVINPGDYVLLPDPGYTDYLAGVLLAD------------GKPVPLNLEP-PHYLPDWSKVDSQIIDKTKLIYL 187 (404)
T ss_dssp HHHHHHHHHCCTTCEEEEEESCCSSHHHHHHHTT------------CEEEEEECCT-TTCCCCGGGSCHHHHHHEEEEEE
T ss_pred HHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHCC------------CEEEEeccCc-ccCcCCHHHHHHhhccCceEEEE
Confidence 9997 57778999999999999999999998888 4778888765 3443443332 46889999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeec
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVI 291 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~ 291 (433)
++||||||.++|.+++++|+++|++||++||+||+|+++.+++.+.++..+++..+++++++||||++|++|+|+||+++
T Consensus 188 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~ 267 (404)
T 2o1b_A 188 TYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVG 267 (404)
T ss_dssp CSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEE
T ss_pred cCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCchhheEeEec
Confidence 99999999999999999999999999999999999999887655556666543346789999999999889999999999
Q ss_pred cccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccE
Q 045431 292 PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPY 371 (433)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~ 371 (433)
+++++ +.+.........+++.+.|.++.++++.. ..++++++++++++++.+.+.|+++|+.+..+.+++|
T Consensus 268 ~~~~~--------~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~ 338 (404)
T 2o1b_A 268 NKDMI--------QALKKYQTHTNAGMFGALQDAAIYALNHY-DDFLEEQSNVFKTRRDRFEAMLAKADLPFVHAKGGIY 338 (404)
T ss_dssp CHHHH--------HHHHHHHHHHCCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCEECCCBSSE
T ss_pred CHHHH--------HHHHHHHhhccCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHhcCCeecCCCcceE
Confidence 88875 66666665555678999999999888753 5678999999999999999999998888888778899
Q ss_pred EEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 372 VWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 372 ~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
+|++++ +.+..++...+++++||.+.||..|+..+++++||++..+++++++++++|+++++
T Consensus 339 ~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~~~e~l~~~l~~l~~~l~ 401 (404)
T 2o1b_A 339 VWLETPPGYDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLALDDQKLDEAAIRLTELAY 401 (404)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCSCTTHHHHHHHHHHGGGG
T ss_pred EEEeCCCCCCHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 999998 44567778887766799999999887555789999987789999999999998763
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-47 Score=367.34 Aligned_cols=344 Identities=24% Similarity=0.414 Sum_probs=288.3
Q ss_pred CCCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCC-CCCC-cEEEcCCh
Q 045431 60 YPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLG-IEEG-DIFVSDGA 135 (433)
Q Consensus 60 ~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~-~~~~-~i~~~~G~ 135 (433)
.+++++|+|+.|+++++.|+.+.+++.+.+. ....|++..|..++|+++++++.+ ++. ++++ +|++|+|+
T Consensus 27 ~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~------~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~ 100 (396)
T 3jtx_A 27 PEGMEAVPLHIGEPKHPTPKVITDALTASLH------ELEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGS 100 (396)
T ss_dssp CTTCCCEECSCCSCCSCCCHHHHHHHHHTGG------GGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSH
T ss_pred ccCCCeEEeCCcCCCCCCCHHHHHHHHHHhh------hccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCc
Confidence 4567899999999999999999999998764 345788888999999999999986 443 6688 99999999
Q ss_pred HHHHHH-HHHhcCCC-----CEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCC-----C
Q 045431 136 KCDISR-LQIVFGSN-----VTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV-----A 204 (433)
Q Consensus 136 ~~al~~-l~~l~~~g-----d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 204 (433)
++++.+ +..++++| |+|++++|+|+++...++..| .+++.++.+. .++..+++.. +
T Consensus 101 ~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~-~g~~~d~~~l~~~~~~ 167 (396)
T 3jtx_A 101 REALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLGG------------GEIHFANCPA-PSFNPDWRSISEEVWK 167 (396)
T ss_dssp HHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHHHHHHTT------------CEEEEEECCT-TTCCCCGGGSCHHHHH
T ss_pred HHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHHHHHHcC------------CEEEEeecCC-CCCccCHHHHHHhhcc
Confidence 999997 57788897 799999999999999999988 4788888843 3554444332 4
Q ss_pred CccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC-CCCcccc----cCCCCcceEEEecccccc
Q 045431 205 RTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDD-NPRSIFE----IPGAKEVAIETSSFSKYA 279 (433)
Q Consensus 205 ~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~----~~~~~~~vi~i~S~sK~~ 279 (433)
++++|++++||||||.+++.+++++|+++|++||+++|+||+|+++.+++ .+.+... +....+++++++||||.+
T Consensus 168 ~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 247 (396)
T 3jtx_A 168 RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRS 247 (396)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTS
T ss_pred CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEecccccc
Confidence 78999999999999999999999999999999999999999999988876 3443322 122256789999999999
Q ss_pred cccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc
Q 045431 280 GFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 280 ~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 359 (433)
+++|+|+||++++++++ +.+.........+++.+.|.++.++++. .+++++.+++++++++.+.+.|+++
T Consensus 248 ~~~G~r~G~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~ 317 (396)
T 3jtx_A 248 NVPGLRSGFVAGDAELL--------KNFLLYRTYHGSAMSIPVQRASIAAWDD--EQHVIDNRRLYQEKFERVIPILQQV 317 (396)
T ss_dssp SCGGGCCEEEEECHHHH--------HHHHHHHHHHTCCCCHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCcccceEEEEeCHHHH--------HHHHHHHhhcccCCCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999988875 6676666666667899999999988874 3678999999999999999999886
Q ss_pred CCeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCC------CCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 360 GFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGP------GGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 360 g~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~------~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
+.+..+.+|+|+|++++..+..++...+++++||.+.||..|+. .+.+++||++..+++++++++++|+++++
T Consensus 318 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l~ 396 (396)
T 3jtx_A 318 -FDVKLPDASFYIWLKVPDGDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVADVATCVKAAEDIVSLYR 396 (396)
T ss_dssp -SCCCCCSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCSCHHHHHHHHHHHHHHCC
T ss_pred -CCccCCCeeEEEEEECCCCCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcCCHHHHHHHHHHHHHHhC
Confidence 55667788999999998767778888887778999999999875 35689999987899999999999999874
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-47 Score=366.62 Aligned_cols=345 Identities=27% Similarity=0.408 Sum_probs=289.1
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCc-EEEcCChHHHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGD-IFVSDGAKCDI 139 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~-i~~~~G~~~al 139 (433)
+++|+|+.|.+++++|+.+.+++.+.+.. ....|++..|..++|+++++++.+ ++.+++++ |++|+|+++++
T Consensus 26 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~ 100 (389)
T 1gd9_A 26 KDVISLGIGEPDFDTPQHIKEYAKEALDK-----GLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAF 100 (389)
T ss_dssp SSCEECCCCSCSSCCCHHHHHHHHHHHHT-----TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHH
T ss_pred cCeEecCCCCCCCCCCHHHHHHHHHHHhC-----CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHH
Confidence 36899999999888889999999998864 235688778999999999999976 55578889 99999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEEcC
Q 045431 140 SR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFFCS 213 (433)
Q Consensus 140 ~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~~ 213 (433)
.+ +..++++||+|++++|+|+++...++..| .+++.++.+.++++..+++. .+++++|++++
T Consensus 101 ~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~ 168 (389)
T 1gd9_A 101 LMGLSAFLKDGEEVLIPTPAFVSYAPAVILAG------------GKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINS 168 (389)
T ss_dssp HHHHTTTCCTTCEEEEEESCCTTHHHHHHHHT------------CEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEES
T ss_pred HHHHHHhCCCCCEEEEcCCCchhHHHHHHHCC------------CEEEEeccCCccCCCCCHHHHHHhcCcCceEEEEEC
Confidence 97 56678999999999999999999998888 47888888654343333221 24788999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccceeeeecc
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIP 292 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~ 292 (433)
||||||.++|.+++++|+++|++||++||+||+|+++.+++. +.++.++++..+++++++|+||++|++|+|+||++++
T Consensus 169 ~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 248 (389)
T 1gd9_A 169 PCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAP 248 (389)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccceEEEEEC
Confidence 999999999999999999999999999999999999887765 5566666543567899999999999899999999999
Q ss_pred ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-hHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccE
Q 045431 293 KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-KAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPY 371 (433)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~ 371 (433)
++++ +.+.........+.+.+.|.++.++++.... .++++++++++++++.+.+.|+++|+.+..+.++++
T Consensus 249 ~~~~--------~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 320 (389)
T 1gd9_A 249 SWII--------ERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAFY 320 (389)
T ss_dssp HHHH--------HHHHHHHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBTTE
T ss_pred HHHH--------HHHHHHHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCeecCCCeeeE
Confidence 8774 6666655555567889999999999885321 278999999999999999999998888887778899
Q ss_pred EEEECC--CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 372 VWVQFP--GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 372 ~~~~~~--~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+|++++ +.+..++...+++++||.+.||..|+..+++++||++..+++++++++++|++++
T Consensus 321 ~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~i~~~l~~l~~~~ 383 (389)
T 1gd9_A 321 IFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERVL 383 (389)
T ss_dssp ECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHH
T ss_pred EEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 999997 4566778888775679999999988765678999998889999999999999875
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-47 Score=371.60 Aligned_cols=347 Identities=26% Similarity=0.465 Sum_probs=284.1
Q ss_pred CCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCC-CcEEEcCChHH
Q 045431 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEE-GDIFVSDGAKC 137 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~-~~i~~~~G~~~ 137 (433)
++.++|+|+.|.++++.++.+.+++.+.+... ....|++..|..+||+++++++.+ +..+++ ++|++|+|+++
T Consensus 35 ~g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~----~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~ 110 (412)
T 2x5d_A 35 RGEDIIDLSMGNPDGPTPPHIVEKLCTVAQRE----DTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKE 110 (412)
T ss_dssp TTCCCEECSSCCCCSCCCHHHHHHHHHTC-------------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHH
T ss_pred cCCCEEecCCCCCCCCCCHHHHHHHHHHHhCC----CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHH
Confidence 35578999999998888899999998877542 245788788999999999999976 555677 79999999999
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCC---CC--CCCccEEEE
Q 045431 138 DISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDL---ST--VARTDIIFF 211 (433)
Q Consensus 138 al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~i~l 211 (433)
++.+ +..++++||+|++++|+|+++...++..| .+++.++.+++.++..++ ++ .+++++|++
T Consensus 111 a~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~l 178 (412)
T 2x5d_A 111 GLAHLMLATLDHGDTILVPNPSYPIHIYGAVIAG------------AQVRSVPLVPGIDFFNELERAIRESIPKPRMMIL 178 (412)
T ss_dssp HHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHHT------------CEEEEEECSTTSCHHHHHHHHHHTEESCCSEEEE
T ss_pred HHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcC------------CEEEEeecCCccCCCCCHHHHHHhcccCceEEEE
Confidence 9997 57778999999999999999999998888 478888887543432222 21 257899999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccceeeee
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTV 290 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~ 290 (433)
++||||||.++|.+++++|+++|++||++||+||+|+++.+.+. +.++..++...+++++++|+||++|++|+|+||++
T Consensus 179 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~ 258 (412)
T 2x5d_A 179 GFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMV 258 (412)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCEEEE
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcccceEEEE
Confidence 99999999999999999999999999999999999999887653 45666664335678999999999998999999999
Q ss_pred ccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCcc
Q 045431 291 IPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAP 370 (433)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~ 370 (433)
++++++ +.+.........+.+.++|.++.++++.. .+++++++++++++++.+.+.|+++|+.+..+.+|+
T Consensus 259 ~~~~~~--------~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~ 329 (412)
T 2x5d_A 259 GNPELV--------SALARIKSYHDYGTFTPLQVAAIAALEGD-QQCVRDIARQYQQRRDVLVKGLREAGWMVENPKASM 329 (412)
T ss_dssp ECHHHH--------HHHHHHHHHHCCCCCHHHHHHHHHHHHSC-SHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCSBSS
T ss_pred cCHHHH--------HHHHHHHhhhccCCCHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHCCCEecCCCeee
Confidence 988875 66666665556678999999999888743 367899999999999999999998888888777889
Q ss_pred EEEEECC-CC---ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 371 YVWVQFP-GR---SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 371 ~~~~~~~-~~---~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
|+|++++ +. +..++...+++++||.+.||..|+..+++++||++..+++++++++++|++++
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~l 395 (412)
T 2x5d_A 330 YVWAKIPEPYAHLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIENRDRLRQAVRGIKAMF 395 (412)
T ss_dssp EEEEECCTTTGGGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCccCCCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 9999997 33 56777888777679999999988755678999998779999999999999875
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-47 Score=364.54 Aligned_cols=344 Identities=24% Similarity=0.390 Sum_probs=285.0
Q ss_pred CCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCC-cEEEcCChHH
Q 045431 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEG-DIFVSDGAKC 137 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~-~i~~~~G~~~ 137 (433)
++.++|+|+.|.++++.++.+.+++.+.+.+ .....|++..|..+||+++++++.+ +..++++ +|++|+|+++
T Consensus 23 ~g~~~idl~~~~~~~~~~~~v~~a~~~~~~~----~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~ 98 (376)
T 2dou_A 23 RGVGLIDLSIGSTDLPPPEAPLKALAEALND----PTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQE 98 (376)
T ss_dssp TTCCCEECSSCCCCCCCCHHHHHHHHHHTTC----GGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHH
T ss_pred cCCCEEeccCCCCCCCCCHHHHHHHHHHHhC----CCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHH
Confidence 4567899999999888889999999998754 2245786656899999999999975 5555666 9999999999
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCC-----CCccEEEE
Q 045431 138 DISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV-----ARTDIIFF 211 (433)
Q Consensus 138 al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~l 211 (433)
++.+ +..++++||+|++++|+|+++...++..| .+++.++. +.++..+++.. +++++|++
T Consensus 99 a~~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g------------~~~~~~~~--~~~~~~d~~~l~~~l~~~~~~v~l 164 (376)
T 2dou_A 99 GLAHLLLALTEPEDLLLLPEVAYPSYFGAARVAS------------LRTFLIPL--REDGLADLKAVPEGVWREAKVLLL 164 (376)
T ss_dssp HHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHTT------------CEEEEECB--CTTSSBCGGGSCHHHHHHEEEEEE
T ss_pred HHHHHHHHhcCCCCEEEECCCCcHhHHHHHHHcC------------CEEEEeeC--CCCCCCCHHHHHHhhccCceEEEE
Confidence 9987 57778999999999999999999988888 47777777 23443443332 46889999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeec
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVI 291 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~ 291 (433)
++||||||.++|.+++++|+++|++||++||+||+|+++.+++.+.++..+.+..+++++++||||.+|++|+|+||+++
T Consensus 165 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~ 244 (376)
T 2dou_A 165 NYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFALG 244 (376)
T ss_dssp CSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEEE
T ss_pred CCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChhheeEEEec
Confidence 99999999999999999999999999999999999999887664445554433346789999999999889999999999
Q ss_pred cccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccE
Q 045431 292 PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPY 371 (433)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~ 371 (433)
+++++ +.+.........+.+.++|.++.+++++ ...++++.++.++++++.+.+.|+++ +.+..+.+|+|
T Consensus 245 ~~~~~--------~~l~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~ 314 (376)
T 2dou_A 245 SEEAL--------ARLERVKGVIDFNQYAGVLRMGVEALKT-PKEVVRGYARVYRERALGMAEALKGV-LSLLPPRATMY 314 (376)
T ss_dssp CHHHH--------HHHHHHHHHHCCCSCHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHHHHHTTT-SEECCCCBSSE
T ss_pred CHHHH--------HHHHHHHHhcccCCCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHh-cCccCCCeeEE
Confidence 98875 6666655555556789999999999985 35678999999999999999999988 88877778899
Q ss_pred EEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 372 VWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 372 ~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
+|++++ +.+..++...++++ ||.+.||..|+..+++++||++..+++++++++++|+++++
T Consensus 315 ~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~f~~~~~~~~Ris~~~~~~~i~~~l~~l~~~l~ 376 (376)
T 2dou_A 315 LWGRLPEGVDDLEFGLRLVER-GVALAPGRGFGPGGKGFVRIALVRPLEELLEAAKRIREALD 376 (376)
T ss_dssp EEEECCTTCCHHHHHHHHHHT-TEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHTC-
T ss_pred EEEECCCCCCHHHHHHHHHHC-CEEEcCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHhC
Confidence 999998 44566777787776 99999999887555789999987789999999999998764
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-47 Score=372.89 Aligned_cols=347 Identities=18% Similarity=0.277 Sum_probs=291.9
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCC-CcEEEcCChHHHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEE-GDIFVSDGAKCDI 139 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~-~~i~~~~G~~~al 139 (433)
.++|+|+.|+|++++|+.+.+++.+.+.+. .....|++..|..++|+++++++.+ ++.+++ ++|++|+|+++++
T Consensus 28 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~---~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~ 104 (422)
T 3fvs_A 28 HDVVNLGQGFPDFPPPDFAVEAFQHAVSGD---FMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGAL 104 (422)
T ss_dssp SCCEECCCSSCSSCCCHHHHHHHHHHHHSC---GGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHH
T ss_pred CCceEeCCCCCCCCCCHHHHHHHHHHHhCC---CccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHH
Confidence 368999999999999999999999988742 1246898888999999999999975 555777 7999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCc----cC------CcccCCC---C--C
Q 045431 140 SR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTA----EN------GFFPDLS---T--V 203 (433)
Q Consensus 140 ~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~------~~~~~~~---~--~ 203 (433)
.+ +..++++||+|++++|+|+++...++..| .+++.++.+. ++ ++..+++ + .
T Consensus 105 ~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~ 172 (422)
T 3fvs_A 105 FTAFQALVDEGDEVIIIEPFFDCYEPMTMMAG------------GRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFT 172 (422)
T ss_dssp HHHHHHHCCTTCEEEEEESCCTTHHHHHHHTT------------CEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCC
T ss_pred HHHHHHHcCCCCEEEEcCCCchhhHHHHHHcC------------CEEEEEecccccccccccccccCCCCCHHHHHhhcC
Confidence 97 57778999999999999999999999888 4777888765 21 2223322 1 2
Q ss_pred CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEeccccccccc
Q 045431 204 ARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFT 282 (433)
Q Consensus 204 ~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~ 282 (433)
+++++|++++||||||.+++.+++++|+++|++||+++|+||+|+++.+++. +.++.+++...+++++++|+||.+|++
T Consensus 173 ~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~ 252 (422)
T 3fvs_A 173 SRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSAT 252 (422)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCG
T ss_pred CCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCc
Confidence 5789999999999999999999999999999999999999999999888764 556777665457899999999999999
Q ss_pred ccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCc------CChhHHHHHHHHHHHHHHHHHHHH
Q 045431 283 GVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSP------EGFKAVHEVIGFYKENTDIIVETF 356 (433)
Q Consensus 283 G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~------~~~~~~~~~~~~~~~~~~~l~~~l 356 (433)
|+|+||++++++++ +.+.........+.+.+.|.++.++++. ....++++++++++++++.+.+.|
T Consensus 253 G~r~G~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 324 (422)
T 3fvs_A 253 GWKVGWVLGPDHIM--------KHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSL 324 (422)
T ss_dssp GGCCEEEECCHHHH--------HHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEeCHHHH--------HHHHHHHhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998885 6666666656667889999998888863 223578999999999999999999
Q ss_pred hhcCCeeecCCCccEEEEECCC----CC----------hHHHHHHHHHcCCeEecCCCCCCC-----CCCCeEEEeeccC
Q 045431 357 NSLGFKVYGGKNAPYVWVQFPG----RS----------SWDVFSEILEKTHVVTTPGSGFGP-----GGEGFIRVSAFGH 417 (433)
Q Consensus 357 ~~~g~~~~~~~~g~~~~~~~~~----~~----------~~~~~~~l~~~~gi~v~~g~~f~~-----~~~~~iRi~~~~~ 417 (433)
+++|+.+..+.+++|+|++++. .. ..++...+++++||.+.||+.|+. .+.+++||++..+
T Consensus 325 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~ 404 (422)
T 3fvs_A 325 QSVGLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKD 404 (422)
T ss_dssp HTTTCEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCCC
T ss_pred HHcCCeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEecCC
Confidence 9999998888899999999862 11 457778888878999999999863 4578999999889
Q ss_pred hhHHHHHHHHHHHhh
Q 045431 418 RGNVLEACKRFKHLY 432 (433)
Q Consensus 418 ~~~l~~~l~~l~~~l 432 (433)
++++++++++|++++
T Consensus 405 ~e~i~~~l~~l~~~l 419 (422)
T 3fvs_A 405 EATLQAMDEKLRKWK 419 (422)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999876
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-47 Score=366.77 Aligned_cols=336 Identities=21% Similarity=0.291 Sum_probs=285.3
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDISR 141 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~al~~ 141 (433)
++|+|+.|++++++|+.+.+++.+.+. ....|++..|..++|+++++++.+ +..+++++|++|+|+++++.+
T Consensus 24 ~~i~l~~~~~~~~~~~~v~~a~~~~~~------~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~ 97 (376)
T 3ezs_A 24 RGLDLGIGEPQFETPKFIQDALKNHTH------SLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFN 97 (376)
T ss_dssp CCCBCSSCCCCSCCCHHHHHHHHTTGG------GGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHH
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHhhh------hcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHH
Confidence 799999999999899999999988762 345788888999999999999976 445588999999999999997
Q ss_pred -HHHhcCC--CCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC--CCCccEEEEcCCCC
Q 045431 142 -LQIVFGS--NVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST--VARTDIIFFCSPNN 216 (433)
Q Consensus 142 -l~~l~~~--gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~p~n 216 (433)
+..++++ ||+|++++|+|+++...++..| .+++.++.++++++..++++ .+++++|++++|||
T Consensus 98 ~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~p~n 165 (376)
T 3ezs_A 98 FPSFVLFDYQNPTIAYPNPFYQIYEGAAKFIK------------AKSLLMPLTKENDFTPSLNEKELQEVDLVILNSPNN 165 (376)
T ss_dssp HHHHHTTTCSSCEEEEEESCCTHHHHHHHHTT------------CEEEEEECCGGGTSCCCCCHHHHHHCSEEEECSSCT
T ss_pred HHHHHcCCCCCCEEEEecCCcHhHHHHHHHcC------------CEEEEcccCCCCCcchhHHhhhccCCCEEEEcCCCC
Confidence 6778899 9999999999999999999888 48888888876555544443 24789999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCC-----CCcceEEEecccccccccccceeeeec
Q 045431 217 PTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPG-----AKEVAIETSSFSKYAGFTGVRLGWTVI 291 (433)
Q Consensus 217 PtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~-----~~~~vi~i~S~sK~~~~~G~r~G~l~~ 291 (433)
|||.+++.+++++|+++|++||+++|+||+|+++.+++.+.++..... ..+++++++||||++|++|+|+||+++
T Consensus 166 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~ 245 (376)
T 3ezs_A 166 PTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAG 245 (376)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEEEE
T ss_pred CcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCccceeEEEee
Confidence 999999999999999999999999999999999888765555544311 256889999999999989999999999
Q ss_pred cccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccE
Q 045431 292 PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPY 371 (433)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~ 371 (433)
+++++ +.+.........+.+.+.|.++.++++. .+++++.+++++++++.+.+.|+ ++. .+.+|+|
T Consensus 246 ~~~~~--------~~~~~~~~~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~--~~~--~~~~~~~ 311 (376)
T 3ezs_A 246 DSRLL--------EKYKAFRAYLGYTSANAIQKASEAAWLD--DRHAEFFRNIYANNLKLARKIFK--NTL--IYPYSFY 311 (376)
T ss_dssp CHHHH--------HHHHHHHTTTCCCCCHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHHHHST--TCC--CCSBSSE
T ss_pred CHHHH--------HHHHHHHhhhcCCCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHhc--CCC--CCCcceE
Confidence 88875 6677666655667899999999998875 35678999999999999999998 655 5678999
Q ss_pred EEEECCCCChHHHHHHHHHcCCeEecCCCCCC--CCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 372 VWVQFPGRSSWDVFSEILEKTHVVTTPGSGFG--PGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 372 ~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~--~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
+|++++ +..++...+++++||.+.||..|+ ..+++++||++..+++++++++++|+++++
T Consensus 312 ~~~~~~--~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l~ 373 (376)
T 3ezs_A 312 VYLPVQ--NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVYDTPLLEKPLEIIETYRE 373 (376)
T ss_dssp EEEECS--CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred EEEECC--CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 999998 567788888775699999999998 456789999987799999999999998864
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-47 Score=367.48 Aligned_cols=346 Identities=19% Similarity=0.289 Sum_probs=288.9
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCC-CcEEEcCChHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEE-GDIFVSDGAKCD 138 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~-~~i~~~~G~~~a 138 (433)
+.++|+|+.|+|++++|+.+.+++.+.+.. .....|++..|..++|+++++++.+ ++.+++ ++|++|+|++++
T Consensus 22 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~----~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a 97 (410)
T 3e2y_A 22 DPSVVNLGQGFPDISPPSYVKEELSKAAFI----DNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGS 97 (410)
T ss_dssp STTSEECSSCCCCSCCCHHHHHHHHHHHTC----GGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHH
T ss_pred CCCeEEecCCCCCCCCCHHHHHHHHHHHhC----ccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHH
Confidence 356899999999999999999999998864 2345888888999999999999975 666777 899999999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCcc---------CCcccCC---CC--C
Q 045431 139 ISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAE---------NGFFPDL---ST--V 203 (433)
Q Consensus 139 l~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~---~~--~ 203 (433)
+.+ +..++++||+|+++.|+|.++...+...| .+++.++.+.. .++..++ ++ .
T Consensus 98 ~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~ 165 (410)
T 3e2y_A 98 LFNSIQGLVDPGDEVIIMVPFYDCYEPMVRMAG------------AVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFS 165 (410)
T ss_dssp HHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTT------------CEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCC
T ss_pred HHHHHHHhcCCCCEEEEeCCCchhhHHHHHHcC------------CEEEEEeccccccccccccccCCcCCHHHHHhhcC
Confidence 997 57788999999999999999999999888 36677766521 1222222 21 2
Q ss_pred CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEeccccccccc
Q 045431 204 ARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFT 282 (433)
Q Consensus 204 ~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~ 282 (433)
+++++|++++||||||.+++.+++++|+++|++||+++|+||+|+++.+++. +.++.+++...+++++++||||.+|++
T Consensus 166 ~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~ 245 (410)
T 3e2y_A 166 SKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVT 245 (410)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCG
T ss_pred CCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCC
Confidence 5789999999999999999999999999999999999999999999888764 556766665567899999999999999
Q ss_pred ccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCc------CChhHHHHHHHHHHHHHHHHHHHH
Q 045431 283 GVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSP------EGFKAVHEVIGFYKENTDIIVETF 356 (433)
Q Consensus 283 G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~------~~~~~~~~~~~~~~~~~~~l~~~l 356 (433)
|+|+||++++++++ +.+.........+.+.+.|.++.+++++ ....+++++++.++++++.+.+.|
T Consensus 246 G~r~G~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 317 (410)
T 3e2y_A 246 GWKLGWSIGPAHLI--------KHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLL 317 (410)
T ss_dssp GGCCEEEECCHHHH--------HHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEECHHHH--------HHHHHHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998885 6666666666677899999998888863 223578999999999999999999
Q ss_pred hhcCCeeecCCCccEEEEECCCC----C--------hHHHHHHHHHcCCeEecCCCCCCCC-----CCCeEEEeeccChh
Q 045431 357 NSLGFKVYGGKNAPYVWVQFPGR----S--------SWDVFSEILEKTHVVTTPGSGFGPG-----GEGFIRVSAFGHRG 419 (433)
Q Consensus 357 ~~~g~~~~~~~~g~~~~~~~~~~----~--------~~~~~~~l~~~~gi~v~~g~~f~~~-----~~~~iRi~~~~~~~ 419 (433)
+++|+.+..+.+++|+|++++.. + ..++...+++++||.+.||..|+.. +.+++||++..+++
T Consensus 318 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e 397 (410)
T 3e2y_A 318 NSVGLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIKKDS 397 (410)
T ss_dssp HTTTCEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECCCCHH
T ss_pred HHCCCeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEcCCHH
Confidence 99999988888999999998621 1 2367777887789999999988642 36899999988999
Q ss_pred HHHHHHHHHHHh
Q 045431 420 NVLEACKRFKHL 431 (433)
Q Consensus 420 ~l~~~l~~l~~~ 431 (433)
++++++++|+++
T Consensus 398 ~l~~~l~~l~~~ 409 (410)
T 3e2y_A 398 TLDAAEEIFRAW 409 (410)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhc
Confidence 999999999864
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-47 Score=373.43 Aligned_cols=344 Identities=20% Similarity=0.333 Sum_probs=282.3
Q ss_pred CceEEecCCCCCC--CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCC-CCCcEEEcCChHHHH
Q 045431 63 AEVISLGIGDTTE--PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGI-EEGDIFVSDGAKCDI 139 (433)
Q Consensus 63 ~~~i~l~~g~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~-~~~~i~~~~G~~~al 139 (433)
+++|+|+.|.|+. .+++.+.+++.+.+.+.. ....+|++..|.++||+++++++.+..++ ++++|++|+|+++++
T Consensus 76 ~~~i~l~~g~p~~~~~p~~~v~~a~~~~l~~~~--~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al 153 (448)
T 3aow_A 76 SDIISLAGGLPNPKTFPKEIIRDILVEIMEKYA--DKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQAL 153 (448)
T ss_dssp SSSEECCCCCCCGGGSCHHHHHHHHHHHHHHSH--HHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHH
T ss_pred CCcEeCCCCCCCchhCCHHHHHHHHHHHHHhhh--HHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHH
Confidence 4689999998863 367888899988886521 12458988889999999999999653334 789999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--C------CCccEE
Q 045431 140 SR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--V------ARTDII 209 (433)
Q Consensus 140 ~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~------~~~~~i 209 (433)
.+ +..++++||+|++++|+|+++...++..| .+++.++.+.+ +++.+ +++ . .++++|
T Consensus 154 ~~~~~~l~~~Gd~Vlv~~p~y~~~~~~~~~~g------------~~~~~v~~~~~-g~d~~~L~~~l~~~~~~~~~~k~v 220 (448)
T 3aow_A 154 DLIGRVFLNPGDIVVVEAPTYLAALQAFNFYE------------PQYIQIPLDDE-GMKVEILEEKLKELKSQGKKVKVV 220 (448)
T ss_dssp HHHHHHHCCTTCEEEEEESCCHHHHHHHHTTC------------CEEEEEEEETT-EECHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHcCCCCEEEEeCCChHHHHHHHHHcC------------CEEEEeccCCC-CCCHHHHHHHHhhhhccCCCCeEE
Confidence 97 57778999999999999999999988888 47778887653 22222 221 1 278887
Q ss_pred E-EcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEeccccccccccccee
Q 045431 210 F-FCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLG 287 (433)
Q Consensus 210 ~-l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G 287 (433)
+ +++||||||.+++.+++++|+++|++||++||+||+|+++.+++. +.++.+++. .+++++++||||+++ +|+|+|
T Consensus 221 ~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~-~~~vi~~~S~SK~~~-~GlriG 298 (448)
T 3aow_A 221 YTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDN-EGRVIYLGTFSKILA-PGFRIG 298 (448)
T ss_dssp EECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCT-TSCEEEEEESTTTTC-GGGCCE
T ss_pred EECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCC-CCCEEEEccchhhcc-ccccEE
Confidence 5 469999999999999999999999999999999999999888764 456667653 468999999999998 999999
Q ss_pred eeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-hHHHHHHHHHHHHHHHHHHHHhhc---CCee
Q 045431 288 WTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-KAVHEVIGFYKENTDIIVETFNSL---GFKV 363 (433)
Q Consensus 288 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~---g~~~ 363 (433)
|++++++++ +.+.........+++.++|.++.++|+.... ++++++++.++++++.+.+.|+++ |+.+
T Consensus 299 ~v~~~~~l~--------~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~ 370 (448)
T 3aow_A 299 WMVGDPGII--------RKMEIAKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKW 370 (448)
T ss_dssp EEEECHHHH--------HHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEE
T ss_pred EEEeCHHHH--------HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 999998875 6666655555566799999999999975433 678999999999999999999985 7888
Q ss_pred ecCCCccEEEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCC--CCCeEEEeecc-ChhHHHHHHHHHHHhh
Q 045431 364 YGGKNAPYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPG--GEGFIRVSAFG-HRGNVLEACKRFKHLY 432 (433)
Q Consensus 364 ~~~~~g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~--~~~~iRi~~~~-~~~~l~~~l~~l~~~l 432 (433)
..|.+|+|+|++++ +.+..++...++++ ||.+.||..|+.. +++++||++.. +++++++++++|++++
T Consensus 371 ~~p~~g~~~~v~~~~~~~~~~l~~~l~~~-gV~v~pg~~f~~~~~~~~~iRls~~~~~~e~i~~~~~~L~~~l 442 (448)
T 3aow_A 371 TKPEGGMFIWVTLPDGIDSKKMLERAIKK-GVAYVPGEAFYAHRDVKNTMRLNFTYVDEDKIMEGIKRLAETI 442 (448)
T ss_dssp CCCSBSSEEEEECSTTCCHHHHHHHHHHT-TEECEEGGGGSTTCCCCSEEEEECSSSCTHHHHHHHHHHHHHH
T ss_pred eCCCccEEEEEEcCCCCCHHHHHHHHHHC-CcEEEcchhhcCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 88888999999998 45677788887776 9999999988653 46899999865 7999999999999875
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-46 Score=360.12 Aligned_cols=340 Identities=24% Similarity=0.398 Sum_probs=284.7
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDI 139 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~al 139 (433)
++++|+|+.|.++++.|+.+.+++.+.+.. ....|++..|..+||+++++++.+ ++.+++++|++|+|+++++
T Consensus 40 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al 114 (389)
T 1o4s_A 40 GEDVINLTAGEPDFPTPEPVVEEAVRFLQK-----GEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQAL 114 (389)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHTT-----CCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHH
T ss_pred CCCEEEccCCCCCCCCCHHHHHHHHHHHhc-----CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHH
Confidence 457899999999888889999999998853 234787778999999999999975 5556889999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCC---C--CCCccEEEEcC
Q 045431 140 SR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS---T--VARTDIIFFCS 213 (433)
Q Consensus 140 ~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~i~l~~ 213 (433)
.+ +..++++||+|++++|+|+++...++..| .+++.++.+.++++..+++ + .+++++|++++
T Consensus 115 ~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~ 182 (389)
T 1o4s_A 115 FNAFMALLDPGDEVIVFSPVWVSYIPQIILAG------------GTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINS 182 (389)
T ss_dssp HHHHHHHCCTTCEEEEEESCCTTHHHHHHHTT------------CEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEES
T ss_pred HHHHHHhCCCCCEEEEcCCCchhHHHHHHHcC------------CEEEEEecCCccCCCCCHHHHHHhcccCceEEEEcC
Confidence 97 57778999999999999999999988888 4788888865334333322 1 24788999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccc
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPK 293 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~ 293 (433)
|+||||.++|.+++++|+++|++||+++|+||+|+++.+++.+.++..++...+++++++||||++|++|+|+||+++++
T Consensus 183 p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~l~~~~ 262 (389)
T 1o4s_A 183 PNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSE 262 (389)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcccceEEEEeCH
Confidence 99999999999999999999999999999999999988765445666664335678999999999998999999999998
Q ss_pred cccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEE
Q 045431 294 ELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVW 373 (433)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~ 373 (433)
+++ +.+.........+++.+.|.++.++++.. +++++++++++++.+.+.|+++|+.+..+.+++++|
T Consensus 263 ~~~--------~~l~~~~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 330 (389)
T 1o4s_A 263 KVA--------TAVSKIQSHTTSCINTVAQYAALKALEVD----NSYMVQTFKERKNFVVERLKKMGVKFVEPEGAFYLF 330 (389)
T ss_dssp HHH--------HHHHHHHHHHTCSCCHHHHHHHHHHTTCC----CHHHHHHHHHHHHHHHHHHHHTTCCCCCCSBSSEEE
T ss_pred HHH--------HHHHHHhhhcccCCCHHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHHHHhcCCeeecCCcceEEE
Confidence 874 66666655555667889999999998854 478889999999999999998888887777889999
Q ss_pred EECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 374 VQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 374 ~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
++++ .+..++...+++++||.+.||..|+. ++++||++..+++++++++++|+++++
T Consensus 331 ~~~~-~~~~~l~~~l~~~~gi~v~~g~~f~~--~~~~Ris~~~~~~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 331 FKVR-GDDVKFCERLLEEKKVALVPGSAFLK--PGFVRLSFATSIERLTEALDRIEDFLN 387 (389)
T ss_dssp EECS-SCHHHHHHHHHHHHCEECEEGGGGTC--TTEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred EeCC-CCHHHHHHHHHHHCCEEEeCchhcCC--CCeEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 9997 56677778877566999999988864 469999998899999999999998864
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-46 Score=363.80 Aligned_cols=351 Identities=22% Similarity=0.323 Sum_probs=286.6
Q ss_pred CCCceEEecCCCCC----CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc-cCCCCCCcEEEcCCh
Q 045431 61 PDAEVISLGIGDTT----EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK-DLGIEEGDIFVSDGA 135 (433)
Q Consensus 61 ~~~~~i~l~~g~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~-~~~~~~~~i~~~~G~ 135 (433)
++.++|+|+.|+|+ +++++.+.+++.+.+.. .....|++..|..++|+++++++.+ ++.+++++|++|+|+
T Consensus 52 ~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~----~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g~ 127 (427)
T 3dyd_A 52 PNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDS----GKYNGYAPSIGFLSSREEIASYYHCPEAPLEAKDVILTSGC 127 (427)
T ss_dssp TTSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHH----CCSSSCCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEESSH
T ss_pred CCCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhc----CcCCCCCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEecCc
Confidence 45578999999985 57889999999998875 3356898889999999999999964 445788999999999
Q ss_pred HHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCC---C--CCCccEE
Q 045431 136 KCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS---T--VARTDII 209 (433)
Q Consensus 136 ~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~i 209 (433)
++++.+ +..++++||+|++++|+|.++...++..| .+++.++.+++.++..+++ + .++++++
T Consensus 128 t~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v 195 (427)
T 3dyd_A 128 SQAIDLCLAVLANPGQNILVPRPGFSLYKTLAESMG------------IEVKLYNLLPEKSWEIDLKQLEYLIDEKTACL 195 (427)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTT------------CEEEEEEEEGGGTTEECHHHHHSSCCTTEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcC------------CEEEEEecccccCCCCCHHHHHHHhccCCCEE
Confidence 999997 57778999999999999999999999999 4777787765444443432 1 2468899
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccceee
Q 045431 210 FFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGW 288 (433)
Q Consensus 210 ~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~ 288 (433)
++++||||||.+++.+++++|+++|++||+++|+||+|+++.+++. +.++..++. ..++++++||||.++++|+|+||
T Consensus 196 ~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~-~~~vi~~~S~sK~~~~~G~riG~ 274 (427)
T 3dyd_A 196 IVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLST-DVPILSCGGLAKRWLVPGWRLGW 274 (427)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCS-SCCEEEEEESTTTSSCGGGCCEE
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCC-CCcEEEEeeccccCCCcCcceEE
Confidence 9999999999999999999999999999999999999999888764 445555543 44689999999999899999999
Q ss_pred eeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCC
Q 045431 289 TVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGK 367 (433)
Q Consensus 289 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~ 367 (433)
+++++.... ..+.+.+.+...... ..+++.+.|.++.++++....+++++++++++++++.+.+.|+++ |+.+..|.
T Consensus 275 ~~~~~~~~~-~~~~i~~~l~~~~~~-~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~p~ 352 (427)
T 3dyd_A 275 ILIHDRRDI-FGNEIRDGLVKLSQR-ILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGLRPVRPS 352 (427)
T ss_dssp EEEECSTTS-SHHHHHHHHHHHHHH-HCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCS
T ss_pred EEecCcchh-hHHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCC
Confidence 998853100 001113444443322 456899999999999985556778999999999999999999998 88888888
Q ss_pred CccEEEEECC------CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 368 NAPYVWVQFP------GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 368 ~g~~~~~~~~------~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+|+|+|+.++ ..+..++...+++++||.+.||..|+. ++++||++..+++++++++++|++++
T Consensus 353 ~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~--~~~iRis~~~~~e~i~~~l~~l~~~l 421 (427)
T 3dyd_A 353 GAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEY--PNFIRVVITVPEVMMLEACSRIQEFC 421 (427)
T ss_dssp BTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTC--TTEEEEESCSCHHHHHHHHHHHHHHH
T ss_pred eeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccCC--CCeEEEEECCCHHHHHHHHHHHHHHH
Confidence 9999999886 245677888888777999999998864 57999999889999999999999875
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-46 Score=361.53 Aligned_cols=340 Identities=21% Similarity=0.301 Sum_probs=283.0
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCC-cEEEcCChHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEG-DIFVSDGAKCDIS 140 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~-~i~~~~G~~~al~ 140 (433)
++|+|+.|.+++++|+.+.+++.+.+.. ....|++..|..+||+++++++.+ +.+++++ +|++|+|+++++.
T Consensus 31 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~ 105 (386)
T 1u08_A 31 QAINLSQGFPDFDGPRYLQERLAHHVAQ-----GANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALY 105 (386)
T ss_dssp TCEECCCSSCSSCCCHHHHHHHHHHHHT-----TCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHH
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHHh-----hccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHH
Confidence 5899999999888889999999998863 245787778999999999999976 5567788 9999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEEcCC
Q 045431 141 R-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFFCSP 214 (433)
Q Consensus 141 ~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~~p 214 (433)
+ +..++++||+|++++|+|+++...++..| .+++.++.+.+ ++..+++. .+++++|++++|
T Consensus 106 ~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~~-~~~~d~~~l~~~l~~~~~~v~l~~p 172 (386)
T 1u08_A 106 AAITALVRNGDEVICFDPSYDSYAPAIALSG------------GIVKRMALQPP-HFRVDWQEFAALLSERTRLVILNTP 172 (386)
T ss_dssp HHHHHHCCTTCEEEEEESCCTTHHHHHHHTT------------CEEEEEECCTT-TCCCCHHHHHHHCCTTEEEEEEESS
T ss_pred HHHHHhCCCCCEEEEeCCCchhHHHHHHHcC------------CEEEEeecCcc-cCcCCHHHHHHhhcccCEEEEEeCC
Confidence 7 57778999999999999999999888888 47788887643 22223221 257899999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccceeeeeccc
Q 045431 215 NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPK 293 (433)
Q Consensus 215 ~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~ 293 (433)
|||||.++|.+++++|+++|++||++||+||+|+++.+++. +.++..++...+++++++|+||.+|++|+|+||+++++
T Consensus 173 ~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~ 252 (386)
T 1u08_A 173 HNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPA 252 (386)
T ss_dssp CTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCH
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccceEEEEcCH
Confidence 99999999999999999999999999999999999887653 34555443224578999999999998999999999998
Q ss_pred cccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEE
Q 045431 294 ELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVW 373 (433)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~ 373 (433)
+++ +.+.........+.+.+.|.++.++++.. ..++++++++++++++.+.+.|+++|+.+..+.+|+|+|
T Consensus 253 ~~~--------~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~ 323 (386)
T 1u08_A 253 PIS--------AEIRKVHQYLTFSVNTPAQLALADMLRAE-PEHYLALPDFYRQKRDILVNALNESRLEILPCEGTYFLL 323 (386)
T ss_dssp HHH--------HHHHHHHHHHTSSCCHHHHHHHHHHHHHC-THHHHTHHHHHHHHHHHHHHHTTSSSCEECCCCBSSEEE
T ss_pred HHH--------HHHHHHHHhhccCCChHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCceEEEE
Confidence 874 66666555455667888999888888743 467889999999999999999999899888777889999
Q ss_pred EECCC---CChHHHHHHHHHcCCeEecCCCCCCC--CCCCeEEEeeccChhHHHHHHHHHHH
Q 045431 374 VQFPG---RSSWDVFSEILEKTHVVTTPGSGFGP--GGEGFIRVSAFGHRGNVLEACKRFKH 430 (433)
Q Consensus 374 ~~~~~---~~~~~~~~~l~~~~gi~v~~g~~f~~--~~~~~iRi~~~~~~~~l~~~l~~l~~ 430 (433)
++++. .+..++...+++++||.+.||..|+. .+++++||++..+++++++++++|++
T Consensus 324 ~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 324 VDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQ 385 (386)
T ss_dssp EECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHHHHTT
T ss_pred EecCCCCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEcCCHHHHHHHHHHHhh
Confidence 99985 35677777787777999999988864 35689999998899999999999975
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-46 Score=363.86 Aligned_cols=348 Identities=18% Similarity=0.267 Sum_probs=287.2
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCC-cEEEcCChHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEG-DIFVSDGAKCDIS 140 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~-~i~~~~G~~~al~ 140 (433)
++|+|+.|.+++++|+.+.+++.+.+.... .....|++..|..+||+++++++.+ +.+++++ +|++|+|+++++.
T Consensus 38 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~ 115 (429)
T 1yiz_A 38 KPLNLGQGFPDYHAPKYALNALAAAANSPD--PLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALY 115 (429)
T ss_dssp CCEECCSSSCSSCCCHHHHHHHHHHHTCSC--GGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred CEEEecCCCCCCCCCHHHHHHHHHHHhccc--cCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHH
Confidence 589999999988888999999999886421 1356788778999999999999976 5557788 9999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccC--------CcccCCCC-----CCCc
Q 045431 141 R-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAEN--------GFFPDLST-----VART 206 (433)
Q Consensus 141 ~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~-----~~~~ 206 (433)
+ +..++++||+|++++|+|+++...++..| .+++.++.+.+. ++..+++. .+++
T Consensus 116 ~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~ 183 (429)
T 1yiz_A 116 ATIQGHVDEGDEVIIIEPFFDCYEPMVKAAG------------GIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKT 183 (429)
T ss_dssp HHHHHHCCTTCEEEEEESCCTTHHHHHHHTT------------CEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTTE
T ss_pred HHHHHhcCCCCEEEEcCCCchhHHHHHHHcC------------CEEEEEeCCcccccccccccCcccCHHHHHHHhccCc
Confidence 7 57778999999999999999999888888 477778876531 22233221 2578
Q ss_pred cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccc
Q 045431 207 DIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVR 285 (433)
Q Consensus 207 ~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r 285 (433)
++|++++||||||.++|.+++++|+++|++||++||+||+|+++.+++. ..++..++...+++++++|+||.+|++|+|
T Consensus 184 ~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r 263 (429)
T 1yiz_A 184 KMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWK 263 (429)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGC
T ss_pred eEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCCcc
Confidence 9999999999999999999999999999999999999999999887653 445655543457889999999999989999
Q ss_pred eeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCc-----CC-hhHHHHHHHHHHHHHHHHHHHHhhc
Q 045431 286 LGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSP-----EG-FKAVHEVIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 286 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-----~~-~~~~~~~~~~~~~~~~~l~~~l~~~ 359 (433)
+||++++++++ +.+.........+.+.+.|.++.++|+. .. ..++++.+++++++++.+.+.|+++
T Consensus 264 ~G~~~~~~~~~--------~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 335 (429)
T 1yiz_A 264 IGWAYGPEALL--------KNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV 335 (429)
T ss_dssp CEEEESCHHHH--------HHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCHHHH--------HHHHHHHhhcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999998874 6666655555667889999988888875 32 3578999999999999999999988
Q ss_pred CCeeecCCCccEEEEECCCC-------------ChHHHHHHHHHcCCeEecCCCCCCCC-----CCCeEEEeeccChhHH
Q 045431 360 GFKVYGGKNAPYVWVQFPGR-------------SSWDVFSEILEKTHVVTTPGSGFGPG-----GEGFIRVSAFGHRGNV 421 (433)
Q Consensus 360 g~~~~~~~~g~~~~~~~~~~-------------~~~~~~~~l~~~~gi~v~~g~~f~~~-----~~~~iRi~~~~~~~~l 421 (433)
|+.+..+.+|+|+|++++.. +..++...+++++||.+.||..|+.. +.+++||++..+++++
T Consensus 336 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~i 415 (429)
T 1yiz_A 336 GMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENL 415 (429)
T ss_dssp TCEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECCSCHHHH
T ss_pred CCcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEecCCHHHH
Confidence 99888777899999999842 34566777776779999999888642 2679999998899999
Q ss_pred HHHHHHHHHhhC
Q 045431 422 LEACKRFKHLYK 433 (433)
Q Consensus 422 ~~~l~~l~~~l~ 433 (433)
++++++|+++++
T Consensus 416 ~~~l~~l~~~l~ 427 (429)
T 1yiz_A 416 QKAAEILRKWKG 427 (429)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHhcc
Confidence 999999998864
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-47 Score=362.56 Aligned_cols=351 Identities=17% Similarity=0.217 Sum_probs=290.4
Q ss_pred HHHHHHhcCCCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcE
Q 045431 52 RKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDI 129 (433)
Q Consensus 52 ~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i 129 (433)
..+......+++++|||+.|++++++|+.+.+++.+.+.+ ....|++ .| .++|+++++++.+ ++.+++++|
T Consensus 12 ~~g~~~~d~~g~~~idl~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~-~~-~~lr~~la~~~~~~~~~~~~~~~i 84 (377)
T 3fdb_A 12 ARNTMKWTRYGQGVLPLWVAESDFSTCPAVLQAITDAVQR-----EAFGYQP-DG-SLLSQATAEFYADRYGYQARPEWI 84 (377)
T ss_dssp HTCCHHHHSSCTTSEECCSSCCCSCCCHHHHHHHHHHHHT-----TCCSSCC-SS-CCHHHHHHHHHHHHHCCCCCGGGE
T ss_pred CCCCceeeccCCCeeeecccCCCCCCCHHHHHHHHHHHHc-----CCCCCCC-CC-HHHHHHHHHHHHHHhCCCCCHHHE
Confidence 3333344455778999999999999999999999998863 3457877 77 9999999999974 555789999
Q ss_pred EEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCC
Q 045431 130 FVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VAR 205 (433)
Q Consensus 130 ~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~ 205 (433)
++|+|+++++.+ +..++++||+|+++.|+|+++...++..| .+++.++.+.+ ++.+ +++ .++
T Consensus 85 ~~t~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~--~d~~~l~~~l~~~ 150 (377)
T 3fdb_A 85 FPIPDVVRGLYIAIDHFTPAQSKVIVPTPAYPPFFHLLSATQ------------REGIFIDATGG--INLHDVEKGFQAG 150 (377)
T ss_dssp EEESCHHHHHHHHHHHHSCTTCCEEEEESCCTHHHHHHHHHT------------CCEEEEECTTS--CCHHHHHHHHHTT
T ss_pred EEeCChHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHHHcC------------CEEEEccCCCC--CCHHHHHHHhccC
Confidence 999999999997 57788999999999999999999999998 47888888654 2211 221 246
Q ss_pred ccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC--CCCcccccCCCCcceEEEecccccccccc
Q 045431 206 TDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDD--NPRSIFEIPGAKEVAIETSSFSKYAGFTG 283 (433)
Q Consensus 206 ~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~--~~~~~~~~~~~~~~vi~i~S~sK~~~~~G 283 (433)
++++++++||||||.+++.+++++|+++|++||+++|+||+|+++.+.+ .+.++..++. .+++++++||||.+|++|
T Consensus 151 ~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~-~~~~i~~~s~sK~~g~~G 229 (377)
T 3fdb_A 151 ARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTA-ASVCITITAPSKAWNIAG 229 (377)
T ss_dssp CCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHH-HHHEEEEECSTTTTTCGG
T ss_pred CCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccC-CCcEEEEEeChHhccCcc
Confidence 8899999999999999999999999999999999999999999988876 3445555433 567899999999999899
Q ss_pred cceeeeec-cccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc--C
Q 045431 284 VRLGWTVI-PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL--G 360 (433)
Q Consensus 284 ~r~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g 360 (433)
+|+||+++ +++++ +.+.........+++.++|.++.++++.. .+++++++++++++++.+.+.|+++ |
T Consensus 230 ~r~G~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 300 (377)
T 3fdb_A 230 LKCAQIIFSNPSDA--------EHWQQLSPVIKDGASTLGLIAAEAAYRYG-TDFLNQEVAYLKNNHDFLLHEIPKRIPG 300 (377)
T ss_dssp GCCEEEECCSHHHH--------HHHHHSCHHHHCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred hhheEEEeCCHHHH--------HHHHHHHHhhcCCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 99999887 45553 56665555555678999999988888743 5678999999999999999999985 8
Q ss_pred CeeecCCCccEEEEECCCC-ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 361 FKVYGGKNAPYVWVQFPGR-SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 361 ~~~~~~~~g~~~~~~~~~~-~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
+.+..+.+++++|++++.. .+.++...+++++||.+.||..|+..+++++||++..+++++++++++|+++++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~~~e~i~~~l~~l~~~l~ 374 (377)
T 3fdb_A 301 AKITPMQATYLMWIDFRDTTIEGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFATSREVLEEAIDRMAKAVS 374 (377)
T ss_dssp CEECCCSBCSEEEEECTTSCCCSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred ceEecCCeeEEEEEECcccCCCHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeCCCHHHHHHHHHHHHHHHh
Confidence 9998888899999999842 335677788877799999999998767789999998899999999999998864
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-45 Score=357.56 Aligned_cols=343 Identities=21% Similarity=0.362 Sum_probs=277.1
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDI 139 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~al 139 (433)
++++|+|+.|.|++++|+.+.+++.+.+..... .....|++..|..+||+++++++.+ ++++++++|++|+|+++++
T Consensus 34 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~-~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al 112 (398)
T 3ele_A 34 KENVYDFSIGNPSIPAPQIVNDTIKELVTDYDS-VALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASL 112 (398)
T ss_dssp GGGCEECCSCCCCSCCCHHHHHHHHHHHHHSCH-HHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHH
T ss_pred CCCeEEeecCCCCCCCCHHHHHHHHHHHhcCCc-cccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHH
Confidence 346899999999888899999999998875210 1146898889999999999999975 6668899999999999999
Q ss_pred HH-HHHhcCCC-CEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEEc
Q 045431 140 SR-LQIVFGSN-VTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFFC 212 (433)
Q Consensus 140 ~~-l~~l~~~g-d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~ 212 (433)
.+ +..++++| |+|++++|+|+++...++..| .+++.++.+.+ ++..+++. .+++++|+++
T Consensus 113 ~~~~~~l~~~g~d~vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~~-~~~~d~~~l~~~l~~~~~~v~~~ 179 (398)
T 3ele_A 113 SICFRALTSDAYDEFITIAPYFPEYKVFVNAAG------------ARLVEVPADTE-HFQIDFDALEERINAHTRGVIIN 179 (398)
T ss_dssp HHHHHHHCCSTTCEEEEESSCCTHHHHHHHHTT------------CEEEEECCCTT-TSSCCHHHHHHTCCTTEEEEEEC
T ss_pred HHHHHHHcCCCCCEEEEeCCCchhhHHHHHHcC------------CEEEEEecCCc-CCcCCHHHHHHHhCcCCCEEEEc
Confidence 97 57788999 999999999999999999888 47888888653 33333221 2578999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHH------cCCEEEEeccccccccCCCCCc-ccccCCCCcceEEEecccccccccccc
Q 045431 213 SPNNPTGAAATREQLTRLVQFAKD------NGSIIVYDSAYALYISDDNPRS-IFEIPGAKEVAIETSSFSKYAGFTGVR 285 (433)
Q Consensus 213 ~p~nPtG~~~~~~~~~~i~~~a~~------~~~~li~De~~~~~~~~~~~~~-~~~~~~~~~~vi~i~S~sK~~~~~G~r 285 (433)
+||||||.+++.+++++|+++|++ ||++||+||+|+++.+++.+.+ ... ..+++++++||||++|++|+|
T Consensus 180 ~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~---~~~~~i~~~s~sK~~~~~G~r 256 (398)
T 3ele_A 180 SPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTK---YYDNTLVCYSYSKSLSLPGER 256 (398)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGG---TCSSEEEEEESTTTSSCTTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHh---hcCCeEEEEehhhcCCCccce
Confidence 999999999999999999999999 9999999999999888764322 222 246789999999999999999
Q ss_pred eeeeeccccccccCCcchhHHHHHHHhh-ccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeee
Q 045431 286 LGWTVIPKELLFSDGFPVAKDFNRIVCT-CFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVY 364 (433)
Q Consensus 286 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 364 (433)
+||++++++++. ...+...+...... ....++.+.|.++.++++... .+++++++++.+.+.|+++|+.+.
T Consensus 257 ~G~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~l~~~L~~~g~~~~ 328 (398)
T 3ele_A 257 IGYVLVPDEVYD--KAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATG------DINAYKENRDLLYEGLTRIGYHCF 328 (398)
T ss_dssp CEEEECCTTSTT--HHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCC------CHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred eEEEEEcchhhh--HHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHcCCeec
Confidence 999999988641 01112233333222 245577889988887776432 357788999999999998899988
Q ss_pred cCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 365 GGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 365 ~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
.+.+++++|++++..+..++...+ +++||.+.||..|+. ++++||++..+++++++++++|++++
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~g~~~~~--~~~iRis~~~~~e~i~~~l~~l~~~l 393 (398)
T 3ele_A 329 KPDGAFYMFVKALEDDSNAFCEKA-KEEDVLIVAADGFGC--PGWVRISYCVDREMIKHSMPAFEKIY 393 (398)
T ss_dssp CCSBSSEEEEECSSSCHHHHHHHH-HTTTEECEESGGGTC--TTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred CCCeeEEEEEEcCCCCHHHHHHHH-HHCCEEEeCccccCC--CCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 888899999999866666676655 566999999998864 57999999889999999999999876
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-46 Score=358.63 Aligned_cols=344 Identities=25% Similarity=0.395 Sum_probs=286.1
Q ss_pred CCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHH
Q 045431 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCD 138 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~a 138 (433)
+++++|+|+.|.++++.|+.+.+++.+.+.. ....|++..|..++|+++++++.+ ++.+++++|++|+|++++
T Consensus 28 ~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a 102 (388)
T 1j32_A 28 EGIDVCSFSAGEPDFNTPKHIVEAAKAALEQ-----GKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQS 102 (388)
T ss_dssp TTCCCEECCCSSCSSCCCHHHHHHHHHHHHT-----TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHH
T ss_pred cCCCEEECCCCCCCCCCCHHHHHHHHHHHhc-----CCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHH
Confidence 3567899999999888889999999988853 235788888999999999999975 555678999999999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEEc
Q 045431 139 ISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFFC 212 (433)
Q Consensus 139 l~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~ 212 (433)
+.+ +..++++||+|++++|+|+++...++..| .+++.++.+.+.++..+++. .+++++|+++
T Consensus 103 ~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~ 170 (388)
T 1j32_A 103 IFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAE------------GTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFN 170 (388)
T ss_dssp HHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTT------------CEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEE
T ss_pred HHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcC------------CEEEEecCCcccCCCCCHHHHHHhcCcCceEEEEe
Confidence 997 57778999999999999999999888888 47888887654343333221 2578899999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCC-CCcceEEEecccccccccccceeeee
Q 045431 213 SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPG-AKEVAIETSSFSKYAGFTGVRLGWTV 290 (433)
Q Consensus 213 ~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~-~~~~vi~i~S~sK~~~~~G~r~G~l~ 290 (433)
+|+||||.++|.+++++|+++|++||+++|+||+|+++.+++. +.++..++. ..+++++++|+||++|++|+|+||++
T Consensus 171 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~ 250 (388)
T 1j32_A 171 TPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLA 250 (388)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEE
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcccceEEEE
Confidence 9999999999999999999999999999999999999887653 345555532 13578999999999998999999999
Q ss_pred ccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCCc
Q 045431 291 IPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNA 369 (433)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g 369 (433)
++++++ +.+.........+++.+.|.++.++++. ..+++++++++++++++.+.+.|+++ |+.+..+.++
T Consensus 251 ~~~~~~--------~~l~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~ 321 (388)
T 1j32_A 251 GPVPLV--------KAATKIQGHSTSNVCTFAQYGAIAAYEN-SQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGA 321 (388)
T ss_dssp CCHHHH--------HHHHHHHHTTTCSCCHHHHHHHHHHHHS-CSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBT
T ss_pred eCHHHH--------HHHHHHHhhcccCCCHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCee
Confidence 998874 6666666555666888999988888863 34678899999999999999999998 8888888788
Q ss_pred cEEEEECC--CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 370 PYVWVQFP--GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 370 ~~~~~~~~--~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+++|++++ +.+..++...+++++||.+.||..|+. ++++|+++..+++++++++++|++++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~i~~~~~~l~~~l 384 (388)
T 1j32_A 322 FYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGA--DDCIRLSYATDLDTIKRGMERLEKFL 384 (388)
T ss_dssp TEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTC--TTBEEEECCSCHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCCHHHHHHHHHHhCCEEEeChhhhCC--CCcEEEEecCCHHHHHHHHHHHHHHH
Confidence 99999887 356677887877656999999988864 57899999889999999999998875
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-46 Score=355.10 Aligned_cols=339 Identities=25% Similarity=0.396 Sum_probs=281.5
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDI 139 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~al 139 (433)
++++|+|+.|.++++.|+.+.+++.+.+.. ....|++..|..+||+++++++.+ ++.+++++|++|+|+++++
T Consensus 28 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~ 102 (370)
T 2z61_A 28 GKKVIHLEIGEPDFNTPKPIVDEGIKSLKE-----GKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGL 102 (370)
T ss_dssp TCCCEECCCCSCSSCCCHHHHHHHHHHHHT-----TCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHH
T ss_pred CCCEEEccCCCCCCCCCHHHHHHHHHHHHc-----CccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHH
Confidence 457899999999877789999999998863 245787778999999999999975 5567889999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCcc
Q 045431 140 SR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPT 218 (433)
Q Consensus 140 ~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPt 218 (433)
.+ +..++++||+|++++|+|+++...++..| .+++.++.+.+ .+...+ .+++++|++++|||||
T Consensus 103 ~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~v~~d~~-~l~~~l--~~~~~~v~~~~p~npt 167 (370)
T 2z61_A 103 FFALSSIIDDGDEVLIQNPCYPCYKNFIRFLG------------AKPVFCDFTVE-SLEEAL--SDKTKAIIINSPSNPL 167 (370)
T ss_dssp HHHHHHHCCTTCEEEEESSCCTHHHHHHHHTT------------CEEEEECSSHH-HHHHHC--CSSEEEEEEESSCTTT
T ss_pred HHHHHHhcCCCCEEEEeCCCchhHHHHHHHcC------------CEEEEeCCCHH-HHHHhc--ccCceEEEEcCCCCCc
Confidence 97 57778999999999999999999988888 36666663221 111111 2478899999999999
Q ss_pred ccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecccccccc
Q 045431 219 GAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFS 298 (433)
Q Consensus 219 G~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~ 298 (433)
|.+++.+ |+++|++||++||+||+|+++.+++.+.++..+++..+++++++||||++|++|+|+||++++++++
T Consensus 168 G~~~~~~----l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~-- 241 (370)
T 2z61_A 168 GEVIDRE----IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVISNDEII-- 241 (370)
T ss_dssp CCCCCHH----HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEECCHHHH--
T ss_pred CcccCHH----HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCccceEEEEEECHHHH--
Confidence 9999976 9999999999999999999988766555666664345788999999999998999999999998874
Q ss_pred CCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCC
Q 045431 299 DGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPG 378 (433)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~ 378 (433)
+.+.........+.+.+.|.++.++++..+.+++++.+++++++++.+.+.|+++|+.+..+.+|+++|++++.
T Consensus 242 ------~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~ 315 (370)
T 2z61_A 242 ------EAILKLQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDFGWEVNNPIGAYYVFPNIGE 315 (370)
T ss_dssp ------HHHHHHHHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCCCCBTTEECCBCSS
T ss_pred ------HHHHHHHhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCeecCCCcceEEEEecCC
Confidence 66666665555678999999988888741356788999999999999999999888888777789999999986
Q ss_pred CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 379 RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 379 ~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
+..++...+++++||.+.||..|+..+++++||++..+++++++++++|+++++
T Consensus 316 -~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 316 -DGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYANSYENIKEGLERIKEFLN 369 (370)
T ss_dssp -CHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred -CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 667777787756699999999887545689999998899999999999998864
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-46 Score=361.08 Aligned_cols=344 Identities=21% Similarity=0.283 Sum_probs=284.2
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCC-cEEEcCChHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEG-DIFVSDGAKCDIS 140 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~-~i~~~~G~~~al~ 140 (433)
++|+|+.|.++++.++.+.+++.+.+.. ....|++..|..+||+++++++.+ ++.++++ +|++|+|+++++.
T Consensus 26 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~ 100 (411)
T 2o0r_A 26 GAVNLGQGFPDEDGPPKMLQAAQDAIAG-----GVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIA 100 (411)
T ss_dssp TCEESSCSSCSSCCCHHHHHHHHHHHHT-----TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHH
T ss_pred CeeeccCcCCCCCCCHHHHHHHHHHHhc-----CCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHH
Confidence 4799999999888889999999998863 245788888999999999999975 5556787 9999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCcc-CCcccCCCC-----CCCccEEEEcC
Q 045431 141 R-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAE-NGFFPDLST-----VARTDIIFFCS 213 (433)
Q Consensus 141 ~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~i~l~~ 213 (433)
+ +..++++||+|++++|+|+++...+...| .+++.++.+.+ .++..+++. .+++++|++++
T Consensus 101 ~~~~~~~~~gd~Vl~~~~~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~ 168 (411)
T 2o0r_A 101 AAVLGLVEPGSEVLLIEPFYDSYSPVVAMAG------------AHRVTVPLVPDGRGFALDADALRRAVTPRTRALIINS 168 (411)
T ss_dssp HHHHHHCCTTCEEEEEESCCTTHHHHHHHTT------------CEEEEEECEEETTEEECCHHHHHHHCCTTEEEEEEES
T ss_pred HHHHHhcCCCCEEEEeCCCcHhHHHHHHHcC------------CEEEEeeccccccCCCCCHHHHHHhhccCceEEEEeC
Confidence 7 57778999999999999999999888888 47777777543 122233221 25789999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccceeeeecc
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIP 292 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~ 292 (433)
|+||||.+++.+++++|+++|++||++||+||+|+++.+++. +.++..++...+++++++|+||.+|++|+|+||++++
T Consensus 169 ~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 248 (411)
T 2o0r_A 169 PHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWACGP 248 (411)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEEECC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccceEEEEeeC
Confidence 999999999999999999999999999999999999887653 4566666443567899999999999899999999998
Q ss_pred ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEE
Q 045431 293 KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYV 372 (433)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~ 372 (433)
++++ +.+.........+.+.+.|.++.++++.. .+++++++++++++++.+.+.|++.|+.+..+.+|+++
T Consensus 249 ~~~~--------~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~ 319 (411)
T 2o0r_A 249 AELI--------AGVRAAKQYLSYVGGAPFQPAVALALDTE-DAWVAALRNSLRARRDRLAAGLTEIGFAVHDSYGTYFL 319 (411)
T ss_dssp HHHH--------HHHHHHHHHHTSCCCTTHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHTCEECCCCBSSEE
T ss_pred HHHH--------HHHHHHHhhccCCCChHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHHcCCEecCCCeeEEE
Confidence 8774 55655554444556788888888888643 56788999999999999999999889988887788999
Q ss_pred EEECCC---CChHHHHHHHHHcCCeEecCCCCCCC-C----------CCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 373 WVQFPG---RSSWDVFSEILEKTHVVTTPGSGFGP-G----------GEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 373 ~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~f~~-~----------~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
|++++. .+..++...+++++||.+.||..|.. . +++++||+++.+++++++++++|+++++
T Consensus 320 ~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~~~e~i~~~~~~l~~~~~ 394 (411)
T 2o0r_A 320 CADPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCKRDDTLDEAIRRLSVLAE 394 (411)
T ss_dssp EEECGGGTCCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECCSCHHHHHHHHHHHGGGGC
T ss_pred EEecCCCCCCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEecCCHHHHHHHHHHHHHHHh
Confidence 999974 45677778787667999999988842 2 3578999998889999999999998763
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-46 Score=359.42 Aligned_cols=344 Identities=16% Similarity=0.222 Sum_probs=286.6
Q ss_pred ceEEecCCCCC-CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCC-CcEEEcCChHHHH
Q 045431 64 EVISLGIGDTT-EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEE-GDIFVSDGAKCDI 139 (433)
Q Consensus 64 ~~i~l~~g~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~-~~i~~~~G~~~al 139 (433)
.+|||+.|++. +++++.+.+++.+.+... ....|++..|..++++++++++.+ +..+++ ++|++|+|+++++
T Consensus 40 ~~id~~~g~~~~~~~~~~v~~a~~~~~~~~----~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~ 115 (407)
T 3nra_A 40 RPVDFSHGDVDAHEPTPGAFDLFSAGVQSG----GVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGAL 115 (407)
T ss_dssp CCEETTSCCTTTSCCCTTHHHHHHHHHHHT----HHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHH
T ss_pred ceeeecCcCCCCCCCcHHHHHHHHHHHhcC----CCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHH
Confidence 48999999876 788899999999988752 234688888999999999999986 544545 7999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCc----cCCcccCCCC-----CCCccEE
Q 045431 140 SR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTA----ENGFFPDLST-----VARTDII 209 (433)
Q Consensus 140 ~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-----~~~~~~i 209 (433)
.+ +..++++||+|++++|+|.++...++..| .+++.++.+. +.++..+++. ..++++|
T Consensus 116 ~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v 183 (407)
T 3nra_A 116 FLAVAATVARGDKVAIVQPDYFANRKLVEFFE------------GEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVF 183 (407)
T ss_dssp HHHHHTTCCTTCEEEEEESCCTHHHHHHHHTT------------CEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEE
T ss_pred HHHHHHhCCCCCEEEEcCCcccchHHHHHHcC------------CEEEEeecccccccCcCCCcCHHHHHHHHhhCCcEE
Confidence 97 57778999999999999999999999998 4778888732 1222333322 2478899
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccC-CCCcceEEEeccccccccccccee
Q 045431 210 FFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIP-GAKEVAIETSSFSKYAGFTGVRLG 287 (433)
Q Consensus 210 ~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~-~~~~~vi~i~S~sK~~~~~G~r~G 287 (433)
++++||||||.+++.+++++|+++|++||+++|+||+|+.+.+++. ..++..++ ...+++++++||||.+|++|+|+|
T Consensus 184 ~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G 263 (407)
T 3nra_A 184 LFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLG 263 (407)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCE
T ss_pred EEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEE
Confidence 9999999999999999999999999999999999999999888764 44555554 346789999999999999999999
Q ss_pred eeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecC
Q 045431 288 WTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGG 366 (433)
Q Consensus 288 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~ 366 (433)
|++++++++ +.+.........+++.+.|.++.++++. ...++++.+++++++++.+.+.|+++ ++.+..+
T Consensus 264 ~~~~~~~~~--------~~l~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 334 (407)
T 3nra_A 264 VAFGSRAII--------ARMEKLQAIVSLRAAGYSQAVLRGWFDE-APGWMEDRIARHQAIRDELLHVLRGCEGVFARTP 334 (407)
T ss_dssp EEEECHHHH--------HHHHHHHHHHTSSSCHHHHGGGGGTTCC-CTTHHHHHHHHHHHHHHHHHHHHHTSTTCBCCCC
T ss_pred EEEcCHHHH--------HHHHHHHhhhccCCChHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHhcCCCceeccC
Confidence 999988875 6666666666666788899888888873 33567888899999999999999998 8888888
Q ss_pred CCccEEEEECCC--CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 367 KNAPYVWVQFPG--RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 367 ~~g~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
.+++++|+.++. .+..++...+++++||.+.||..|++.+.+++||++..+++++++++++|++++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~~~~l~~~~ 402 (407)
T 3nra_A 335 QAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVTLV 402 (407)
T ss_dssp SBSSEECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCSCHHHHHHHHHHHHHHH
T ss_pred CeeEEEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 888999999984 466777777777679999999999877789999999889999999999999876
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=358.90 Aligned_cols=342 Identities=26% Similarity=0.372 Sum_probs=283.4
Q ss_pred CCceEEecCCCC---CCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChH
Q 045431 62 DAEVISLGIGDT---TEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAK 136 (433)
Q Consensus 62 ~~~~i~l~~g~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~ 136 (433)
++++|+|+.|.+ +++.|+.+.+++.+.+.. ....|++..|..++|+++++++.+ ++++++++|++|+|++
T Consensus 37 g~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~ 111 (406)
T 1xi9_A 37 GIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKE-----GHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVT 111 (406)
T ss_dssp TCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHT-----TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHH
T ss_pred CCCEEEecCCCCCcCCCCCCHHHHHHHHHHHhc-----CCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChH
Confidence 457899999998 777889999999988863 234787778999999999999975 6678889999999999
Q ss_pred HHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEE
Q 045431 137 CDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIF 210 (433)
Q Consensus 137 ~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~ 210 (433)
+++.+ +..++++||+|++++|+|+++...++..| .+++.++.+.+.++..+++. .+++++|+
T Consensus 112 ~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~ 179 (406)
T 1xi9_A 112 EALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYG------------GKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIA 179 (406)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTT------------CEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCCccHHHHHHHcC------------CEEEEeecCCCcCCcCCHHHHHHhhCcCceEEE
Confidence 99997 56778999999999999999999988888 47777887653343333221 24789999
Q ss_pred EcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcc-eEEEecccccccccccceeee
Q 045431 211 FCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEV-AIETSSFSKYAGFTGVRLGWT 289 (433)
Q Consensus 211 l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~-vi~i~S~sK~~~~~G~r~G~l 289 (433)
+++|+||||.+++.+++++|+++|++||++||+||+|+++.+++.+.++..++ .++ +++++||||++|++|+|+||+
T Consensus 180 i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~--~~~~~i~~~s~sK~~~~~G~r~G~~ 257 (406)
T 1xi9_A 180 VINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLT--KDVPVIVMNGLSKVYFATGWRLGYM 257 (406)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHC--SSSCEEEEEESTTTTCCGGGCCEEE
T ss_pred EECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcC--CCceEEEEeccccccCCCccEEEEE
Confidence 99999999999999999999999999999999999999987754455666664 567 899999999999899999999
Q ss_pred e--ccc----cccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCe
Q 045431 290 V--IPK----ELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFK 362 (433)
Q Consensus 290 ~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~ 362 (433)
+ +++ +++ +.+....... .+++.+.|.++.++++.. .+++++++++++++++.+.+.|+++ |+.
T Consensus 258 ~~~~~~~~~~~l~--------~~l~~~~~~~-~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 327 (406)
T 1xi9_A 258 YFVDPENKLSEVR--------EAIDRLARIR-LCPNTPAQFAAIAGLTGP-MDYLKEYMKKLKERRDYIYKRLNEIPGIS 327 (406)
T ss_dssp EEECTTCTTHHHH--------HHHHHHHHHT-CCSCSHHHHHHHHHHHSC-CHHHHHHHHHHHHHHHHHHHHHHTSTTEE
T ss_pred EEecCchhHHHHH--------HHHHHHHHhh-cCCCHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Confidence 9 887 664 5565544443 567889999888888533 4557889999999999999999988 888
Q ss_pred eecCCCccEEEEECC---CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 363 VYGGKNAPYVWVQFP---GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 363 ~~~~~~g~~~~~~~~---~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+..+.+++++|++++ +.+..++...+++++||.+.||..|+..+++++||++..+++++++++++|++++
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~~~~~~i~~~~~~l~~~l 400 (406)
T 1xi9_A 328 TTKPQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDRFEKFM 400 (406)
T ss_dssp CCCCCBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHH
T ss_pred eecCCeeEEEEEecCccCCCCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEecCCHHHHHHHHHHHHHHH
Confidence 877778899999887 3466777777775669999999988755568999999888999999999998875
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=351.54 Aligned_cols=341 Identities=20% Similarity=0.282 Sum_probs=282.8
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDI 139 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~al 139 (433)
++++|+|+.|.++++.|+.+.+++ +.+.. ....|++..|..++|+++++++.+ ++++++++|++|+|+++++
T Consensus 42 g~~~i~l~~~~~~~~~~~~v~~a~-~~l~~-----~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~ 115 (409)
T 2gb3_A 42 GVRIHHLNIGQPDLKTPEVFFERI-YENKP-----EVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAI 115 (409)
T ss_dssp TCEEEECSSCCCCSCCCTHHHHHH-HHTCC-----SSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHH
T ss_pred CCCEEeccCCCCCCCCCHHHHHHH-HHHhc-----CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHH
Confidence 457999999999877888899999 77742 245788888999999999999975 5557889999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcc--cCCCC--CCCccEEEEcCC
Q 045431 140 SR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFF--PDLST--VARTDIIFFCSP 214 (433)
Q Consensus 140 ~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~i~l~~p 214 (433)
.+ +..++++||+|++++|+|+++...++..| .+++.++.++++++. .++++ .+++++|++++|
T Consensus 116 ~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~~~l~~~l~~~~~~v~~~~p 183 (409)
T 2gb3_A 116 LFSFAVIANPGDEILVLEPFYANYNAFAKIAG------------VKLIPVTRRMEEGFAIPQNLESFINERTKGIVLSNP 183 (409)
T ss_dssp HHHHHHHCCTTCEEEEEESCCTHHHHHHHHHT------------CEEEEEECCGGGTSCCCTTGGGGCCTTEEEEEEESS
T ss_pred HHHHHHhCCCCCEEEEcCCCchhHHHHHHHcC------------CEEEEeccCCCCCCccHHHHHHhhCcCCeEEEECCC
Confidence 97 57778999999999999999999998888 478888887533433 22332 247899999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccc-
Q 045431 215 NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPK- 293 (433)
Q Consensus 215 ~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~- 293 (433)
+||||.+++.+++++|+++|++||++||+||+|+++.+.+.+.++ +.+..+++++++||||++|++|+|+||+++++
T Consensus 184 ~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~--~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~ 261 (409)
T 2gb3_A 184 CNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA--LSIESDKVVVIDSVSKKFSACGARVGCLITRNE 261 (409)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG--GGSCCTTEEEEEESTTTTTCGGGCCEEEECSCH
T ss_pred CCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCc--cccCCCCEEEEecchhccCCccceEEEEEECcH
Confidence 999999999999999999999999999999999988776544443 22224568999999999999999999999998
Q ss_pred cccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCee-ecCCCccEE
Q 045431 294 ELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKV-YGGKNAPYV 372 (433)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~-~~~~~g~~~ 372 (433)
+++ +.+........ +++.+.|.++.++++. +..++++++++++++++.+.+.|+++|+.+ ..+.+++++
T Consensus 262 ~l~--------~~l~~~~~~~~-~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 331 (409)
T 2gb3_A 262 ELI--------SHAMKLAQGRL-APPLLEQIGSVGLLNL-DDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYI 331 (409)
T ss_dssp HHH--------HHHHHHHHHSC-CCCHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSBSSEE
T ss_pred HHH--------HHHHHHHhccC-CCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHcCceeeeCCCeeEEE
Confidence 774 56665555444 6889999999999974 456789999999999999999999888888 777789999
Q ss_pred EEECCCCChHHHHHHHHHc-----CCeEecCCCCCCC---CCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 373 WVQFPGRSSWDVFSEILEK-----THVVTTPGSGFGP---GGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 373 ~~~~~~~~~~~~~~~l~~~-----~gi~v~~g~~f~~---~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
|+++++.+..++...++++ +||.+.||..|+. .+++++||++..+++++++++++|++++
T Consensus 332 ~~~~~~~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~~~~e~i~~~~~~l~~~l 399 (409)
T 2gb3_A 332 TAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEGL 399 (409)
T ss_dssp EEECSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 9999855667777777766 5999999988864 3468999998889999999999998875
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-45 Score=353.09 Aligned_cols=344 Identities=17% Similarity=0.243 Sum_probs=287.0
Q ss_pred CCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHH
Q 045431 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCD 138 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~a 138 (433)
.++++|+|+.|++++++|+.+.+++.+.+.+ ....|++. ..++++++++++.+ ++.+++++|++|+|++++
T Consensus 25 ~g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a 97 (391)
T 3dzz_A 25 LKEKELPMWIAEMDFKIAPEIMASMEEKLKV-----AAFGYESV--PAEYYKAVADWEEIEHRARPKEDWCVFASGVVPA 97 (391)
T ss_dssp CCTTCEECCSSCCSSCCCHHHHHHHHHHHTT-----CCCCCBCC--CHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHH
T ss_pred cCCCceeccccCCCCCCCHHHHHHHHHHHhc-----CcCCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHH
Confidence 3557999999999999999999999998863 34567554 79999999999986 555789999999999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCc-cCCcccCCC---C---CCCccEEE
Q 045431 139 ISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTA-ENGFFPDLS---T---VARTDIIF 210 (433)
Q Consensus 139 l~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~---~~~~~~i~ 210 (433)
+.+ +..++++||+|++++|+|+++...++..| .+++.++.+. ++.+..+++ + .+++++|+
T Consensus 98 ~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~ 165 (391)
T 3dzz_A 98 ISAMVRQFTSPGDQILVQEPVYNMFYSVIEGNG------------RRVISSDLIYENSKYSVNWADLEEKLATPSVRMMV 165 (391)
T ss_dssp HHHHHHHHSCTTCEEEECSSCCHHHHHHHHHTT------------CEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEE
T ss_pred HHHHHHHhCCCCCeEEECCCCcHHHHHHHHHcC------------CEEEEeeeeecCCceeecHHHHHHHHhccCceEEE
Confidence 997 67788999999999999999999999888 4788888753 222223322 1 26889999
Q ss_pred EcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCC-CCcceEEEecccccccccccceee
Q 045431 211 FCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPG-AKEVAIETSSFSKYAGFTGVRLGW 288 (433)
Q Consensus 211 l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~-~~~~vi~i~S~sK~~~~~G~r~G~ 288 (433)
+++||||||.++|.+++++|+++|++||+++|+||+|+++.+.+. +.++..+.. ..++++++.|+||.+|++|+|+||
T Consensus 166 i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~ 245 (391)
T 3dzz_A 166 FCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAAC 245 (391)
T ss_dssp EESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEE
T ss_pred EECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccchhheE
Confidence 999999999999999999999999999999999999999887763 556666542 257899999999999999999999
Q ss_pred eecc-ccccccCCcchhHHHHHHHh-hccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc--CCeee
Q 045431 289 TVIP-KELLFSDGFPVAKDFNRIVC-TCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL--GFKVY 364 (433)
Q Consensus 289 l~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g~~~~ 364 (433)
++++ ++++ +.+..... ....+++.++|.++.++++. ...++++.+++++++++.+.+.|+++ |+.+.
T Consensus 246 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 316 (391)
T 3dzz_A 246 AIIPNPDLR--------ARAEESFFLAGIGEPNLLAIPAAIAAYEE-GHDWLRELKQVLRDNFAYAREFLAKEVPEVKVL 316 (391)
T ss_dssp EECCSHHHH--------HHHHHHHHHHTCSSCCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEC
T ss_pred EEECCHHHH--------HHHHHHHHhhccCCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEe
Confidence 9998 5553 55655433 33456788889888888874 45678999999999999999999984 89998
Q ss_pred cCCCccEEEEECC--CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 365 GGKNAPYVWVQFP--GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 365 ~~~~g~~~~~~~~--~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
.+.+++++|++++ +.+..++...+++++||.+.||..|+..+++++||++..+++++++++++|++++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l 386 (391)
T 3dzz_A 317 DSNASYLAWVDISALGMNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLACPKELVIDGMQRLKQGV 386 (391)
T ss_dssp CCCBSSEEEEECGGGCSCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred ccCceEEEEEehhhcCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHH
Confidence 8888999999998 3577788888875669999999999877789999999889999999999999876
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-45 Score=351.30 Aligned_cols=344 Identities=19% Similarity=0.289 Sum_probs=285.3
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDI 139 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~al 139 (433)
+.++|+|+.|++++++|+.+.+++.+.+.+ ....|++ +..++++++++++.+ ++.+++++|++|+|+++++
T Consensus 31 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~--~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~ 103 (391)
T 4dq6_A 31 TNDLLPMWVADMDFKAAPCIIDSLKNRLEQ-----EIYGYTT--RPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAI 103 (391)
T ss_dssp CSCSEECCSSSCSSCCCHHHHHHHHHHHTT-----CCCCCBC--CCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHH
T ss_pred CCCceeccccCCCCCCCHHHHHHHHHHHhC-----CCCCCCC--CCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHH
Confidence 357899999999999999999999998863 3446644 679999999999987 4447899999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecC--ccCCcccCCCC----CCCccEEEEc
Q 045431 140 SR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCT--AENGFFPDLST----VARTDIIFFC 212 (433)
Q Consensus 140 ~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~i~l~ 212 (433)
.+ +..++++||+|++++|+|+++...++..| .+++.++.+ .++.+..+++. ..++++|+++
T Consensus 104 ~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~v~i~ 171 (391)
T 4dq6_A 104 SLLINELTKANDKIMIQEPVYSPFNSVVKNNN------------RELIISPLQKLENGNYIMDYEDIENKIKDVKLFILC 171 (391)
T ss_dssp HHHHHHHSCTTCEEEECSSCCTHHHHHHHHTT------------CEEEECCCEECTTSCEECCHHHHHHHCTTEEEEEEE
T ss_pred HHHHHHhCCCCCEEEEcCCCCHHHHHHHHHcC------------CeEEeeeeeecCCCceEeeHHHHHHHhhcCCEEEEE
Confidence 97 57788999999999999999999999888 478888876 33333344322 1228899999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCC-CCcceEEEecccccccccccceeeee
Q 045431 213 SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPG-AKEVAIETSSFSKYAGFTGVRLGWTV 290 (433)
Q Consensus 213 ~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~-~~~~vi~i~S~sK~~~~~G~r~G~l~ 290 (433)
+||||||.+++.+++++|+++|++||+++|+||+|+++.+.+. +.++..++. ..+++++++|+||.+|++|+|+||++
T Consensus 172 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~ 251 (391)
T 4dq6_A 172 NPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVV 251 (391)
T ss_dssp SSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEE
T ss_pred CCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCcccceEEEE
Confidence 9999999999999999999999999999999999999888764 445555532 13678999999999999999999999
Q ss_pred ccc-cccccCCcchhHHHHHHHhh-ccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc--CCeeecC
Q 045431 291 IPK-ELLFSDGFPVAKDFNRIVCT-CFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL--GFKVYGG 366 (433)
Q Consensus 291 ~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g~~~~~~ 366 (433)
+++ +++ +.+...... ...+++.++|.++.++++. ..+++++.+++++++++.+.+.|+++ |+.+..+
T Consensus 252 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 322 (391)
T 4dq6_A 252 LPDEKDY--------KLLDDAFTRIDIKRNNCFSLVATEASYNN-GESWLESFLEYLESNIDFAIKYINENMPKLKVRKP 322 (391)
T ss_dssp CCSHHHH--------HHHHHHHHHTTCCCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCC
T ss_pred eCCHHHH--------HHHHHHHHhhcCCCCCHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEecCC
Confidence 987 553 556555432 3446788999988888874 34678999999999999999999984 8999888
Q ss_pred CCccEEEEECC--CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 367 KNAPYVWVQFP--GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 367 ~~g~~~~~~~~--~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
.+++++|++++ +.+..++...+++++||.+.||..|+..+++++||++..+++++++++++|+++++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l~ 391 (391)
T 4dq6_A 323 EGTYLLWVDFSALGLSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLACPRSMLEEALIRIKNAIN 391 (391)
T ss_dssp SBSSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred CccEEEEEEhhhcCCCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEcCCHHHHHHHHHHHHHHhC
Confidence 88999999998 45777888887776699999999998777899999998899999999999999874
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-45 Score=358.93 Aligned_cols=353 Identities=17% Similarity=0.133 Sum_probs=285.8
Q ss_pred CCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHH
Q 045431 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCD 138 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~a 138 (433)
+++++|+|+.|++++++++.+.+++.+.+.. .....|++..|..++|+++++++.+ ++.+++++|++|+|++++
T Consensus 42 ~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~----~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~a 117 (437)
T 3g0t_A 42 TGTKFCRMEMGVPGLPAPQIGIETEIQKLRE----GVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQG 117 (437)
T ss_dssp HTCCCEECCCCSCCSCCCHHHHHHHHHHHHH----TGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHH
T ss_pred cCCCEEeccCcCCCCCCCHHHHHHHHHHHhC----CcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHH
Confidence 3457999999999999999999999998864 2236898888999999999999974 666789999999999999
Q ss_pred HHH-HHHhc--CCCC--EEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCC---CC---CCCcc
Q 045431 139 ISR-LQIVF--GSNV--TMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDL---ST---VARTD 207 (433)
Q Consensus 139 l~~-l~~l~--~~gd--~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~ 207 (433)
+.+ +..++ ++|| +|++++|+|.++...++..| .+++.++.+++ ++..++ ++ .++++
T Consensus 118 l~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~~-~~~~d~~~l~~~l~~~~~~ 184 (437)
T 3g0t_A 118 CFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRILG------------QKFESFDLFEY-RGEKLREKLESYLQTGQFC 184 (437)
T ss_dssp HHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHHHHT------------CCCEEEEGGGG-CTTHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHHHcC------------CEEEEEeecCC-CCccCHHHHHHHHhcCCce
Confidence 997 57777 9999 99999999999999999998 47778887633 332222 11 36789
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcc-------cccCCCCcceEEEeccccccc
Q 045431 208 IIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSI-------FEIPGAKEVAIETSSFSKYAG 280 (433)
Q Consensus 208 ~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~-------~~~~~~~~~vi~i~S~sK~~~ 280 (433)
+|++++||||||.+++.+++++|+++|++||++||+||+|+++.+++ ..++ ..++...+++++++|+||.+|
T Consensus 185 ~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~ 263 (437)
T 3g0t_A 185 SIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRK-DYSHPGEPLYQPSVANYTDNYILALSSSKAFS 263 (437)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTS-CCCSTTSSCCCCCGGGTCSCEEEEEESTTTTS
T ss_pred EEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCC-CcCcccccchhhccCCCCCcEEEEEcCccCCC
Confidence 99999999999999999999999999999999999999999877763 2223 444433578899999999999
Q ss_pred ccccceeeeeccccccccCCcchhHH----------HHHHHhhccCCCcHHHHHHHHHhcCcCC--hhHHHHHHHHHHHH
Q 045431 281 FTGVRLGWTVIPKELLFSDGFPVAKD----------FNRIVCTCFNGASNISQAGGLACLSPEG--FKAVHEVIGFYKEN 348 (433)
Q Consensus 281 ~~G~r~G~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~ 348 (433)
++|+|+||++++++++.+....+... +.+.......+++.++|.++.++++... ..++++.+++++++
T Consensus 264 ~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 343 (437)
T 3g0t_A 264 YAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRK 343 (437)
T ss_dssp CGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred CccceeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHH
Confidence 99999999999988752000000000 4444444556689999999998887432 12378999999999
Q ss_pred HHHHHHHHhhcCCeee-------cCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc-ChhH
Q 045431 349 TDIIVETFNSLGFKVY-------GGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG-HRGN 420 (433)
Q Consensus 349 ~~~l~~~l~~~g~~~~-------~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~ 420 (433)
++.+.+.|+++|+.+. ++.+++|+|+++++.+..++...|.++ ||.+.||..|+...++++||++.. ++++
T Consensus 344 ~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-gi~v~~~~~~~~~~~~~iRis~~~~~~e~ 422 (437)
T 3g0t_A 344 ARIMKKMFLDNGFNIVYDKDGNEPLADGFYFTVGYKGMDSSKLIEKFVRY-GMCAITLKTTGSKRNEAMRICTSLLPESQ 422 (437)
T ss_dssp HHHHHHHHHTTTEEESSCEETTEECCSSSEEEEEETTCCHHHHHHHHHHT-TEECEESTTTTCCCTTCEEEECSSSCGGG
T ss_pred HHHHHHHHHHcCCEEeccccCCCCCceeEEEEEecCCCCHHHHHHHHHHc-CeEEeeccccCCCCCCEEEEEEecCCHHH
Confidence 9999999999998887 437899999999866777888887765 999999998876555889999865 8999
Q ss_pred HHHHHHHHHHhh
Q 045431 421 VLEACKRFKHLY 432 (433)
Q Consensus 421 l~~~l~~l~~~l 432 (433)
+++++++|++++
T Consensus 423 i~~~~~~l~~~~ 434 (437)
T 3g0t_A 423 FPDLEKRLQMLN 434 (437)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-45 Score=353.34 Aligned_cols=346 Identities=19% Similarity=0.289 Sum_probs=278.4
Q ss_pred CceEEecCCCC----CCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHh-------c-cCCCCCCcEE
Q 045431 63 AEVISLGIGDT----TEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFY-------K-DLGIEEGDIF 130 (433)
Q Consensus 63 ~~~i~l~~g~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~-------~-~~~~~~~~i~ 130 (433)
.++|+|+.|.| ++++++.+.+++.+.+.. .....|++..|..+||+++|+++. + ++.+++++|+
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~----~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~ 108 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDS----QECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVV 108 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHT----TCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEE
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhC----CccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEE
Confidence 46899999986 467889999999998864 234578878899999999999997 3 4457889999
Q ss_pred EcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CC
Q 045431 131 VSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VA 204 (433)
Q Consensus 131 ~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 204 (433)
+|+|+++++.+ +..++++||+|++++|+|+++...++..| .+++.++.+.+.++..+++. .+
T Consensus 109 ~~~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~~ 176 (416)
T 1bw0_A 109 LCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYG------------IGMHFYNCRPENDWEADLDEIRRLKDD 176 (416)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTT------------CEEEEEEEEGGGTTEECHHHHHHHCCT
T ss_pred EeCChHHHHHHHHHHhCCCCCEEEEcCCCcHhHHHHHHHcC------------cEEEEeecCcccCCCCCHHHHHHHhcc
Confidence 99999999997 57778999999999999999999888888 47777777654333333321 24
Q ss_pred CccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-----CCcccccCCCCcceEEEecccccc
Q 045431 205 RTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-----PRSIFEIPGAKEVAIETSSFSKYA 279 (433)
Q Consensus 205 ~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-----~~~~~~~~~~~~~vi~i~S~sK~~ 279 (433)
+++++++++|+||||.+++.+++++|+++|++||++||+||+|+++.+++. ..++..++. .+++++++||||.+
T Consensus 177 ~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~ 255 (416)
T 1bw0_A 177 KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFET-TVPRVILGGTAKNL 255 (416)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCC-SCCEEEEEESTTTT
T ss_pred CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccC-CCcEEEEecchhhC
Confidence 678999999999999999999999999999999999999999999877653 334544432 34689999999999
Q ss_pred cccccceeeeecccc--ccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHh
Q 045431 280 GFTGVRLGWTVIPKE--LLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFN 357 (433)
Q Consensus 280 ~~~G~r~G~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~ 357 (433)
+++|+|+||++++++ ++. .+...+... .....+++.++|.++.++++.....++++.+++++++++++.+.|+
T Consensus 256 ~~~Glr~G~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 330 (416)
T 1bw0_A 256 VVPGWRLGWLLYVDPHGNGP----SFLEGLKRV-GMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIG 330 (416)
T ss_dssp SCGGGCCEEEEEECTTCSCH----HHHHHHHHH-HHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCceEEEEEeeCchhhHH----HHHHHHHHH-hccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999874 430 011122222 1124457899999999998754456788999999999999999999
Q ss_pred hc-CCeeecCCCccEEEEECCC------CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHH
Q 045431 358 SL-GFKVYGGKNAPYVWVQFPG------RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKH 430 (433)
Q Consensus 358 ~~-g~~~~~~~~g~~~~~~~~~------~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~ 430 (433)
++ |+.+..+.+|+|+|+.++. .+..++...+++++||.+.||..|+. ++++||++..+++++++++++|.+
T Consensus 331 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~--~~~iRis~~~~~e~l~~~l~~l~~ 408 (416)
T 1bw0_A 331 ECIGLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHA--PGFTRLTTTRPVEVYREAVERIKA 408 (416)
T ss_dssp TSTTEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTC--TTEEEEECCSCHHHHHHHHHHHHH
T ss_pred hCCCCcccCCCeeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCC--CCeEEEEecCCHHHHHHHHHHHHH
Confidence 88 8888777789999999862 35667777777667999999998863 579999998889999999999988
Q ss_pred hh
Q 045431 431 LY 432 (433)
Q Consensus 431 ~l 432 (433)
++
T Consensus 409 ~l 410 (416)
T 1bw0_A 409 FC 410 (416)
T ss_dssp HH
T ss_pred HH
Confidence 75
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-45 Score=354.56 Aligned_cols=335 Identities=16% Similarity=0.151 Sum_probs=254.8
Q ss_pred CCceEEecCCCC---C--CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCc--EEEc
Q 045431 62 DAEVISLGIGDT---T--EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGD--IFVS 132 (433)
Q Consensus 62 ~~~~i~l~~g~~---~--~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~--i~~~ 132 (433)
.+++|+|+.|.+ + .++++.+.++.. .+... ...++|++..|.++||+++++|+.+ +..+++++ |++|
T Consensus 28 ~~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~---~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t 103 (405)
T 3k7y_A 28 CEEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTEN---YKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQC 103 (405)
T ss_dssp CSSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHH---CCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEE
T ss_pred CcCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCC---CCCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEc
Confidence 357899999973 2 345778888776 43111 4567899999999999999999975 33345664 5999
Q ss_pred CChHHHHHHH-HHhcC--CCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-------
Q 045431 133 DGAKCDISRL-QIVFG--SNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST------- 202 (433)
Q Consensus 133 ~G~~~al~~l-~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 202 (433)
+|+++++.++ ..++. | |+|++++|+|++|...++.+| .+++.++..+++++..+++.
T Consensus 104 ~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~~ 170 (405)
T 3k7y_A 104 IGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIESRG------------FNLKYINFFDYNLIDINYDLFLNDLRN 170 (405)
T ss_dssp EHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHHTTT------------CEEEEECCEETTTTEECHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHHHcC------------CeEEEEeccccccCCcCHHHHHHHHHh
Confidence 9999999984 56666 8 999999999999999999999 47888887433334444332
Q ss_pred CCCccEEEEcCC-CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC---CCcccccCCCCcceEEEeccccc
Q 045431 203 VARTDIIFFCSP-NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN---PRSIFEIPGAKEVAIETSSFSKY 278 (433)
Q Consensus 203 ~~~~~~i~l~~p-~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~---~~~~~~~~~~~~~vi~i~S~sK~ 278 (433)
.++++++++++| |||||.+++.+++++|+++|++|+++||+||+|.++.+++. ..++..+....+++|+++||||+
T Consensus 171 ~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 250 (405)
T 3k7y_A 171 IPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKN 250 (405)
T ss_dssp SCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTT
T ss_pred CCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCcc
Confidence 235678888755 99999999999999999999999999999999999887632 12333333335689999999999
Q ss_pred ccccccceeeeec---cccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCC-----hhHHHHHHHHHHHHHH
Q 045431 279 AGFTGVRLGWTVI---PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEG-----FKAVHEVIGFYKENTD 350 (433)
Q Consensus 279 ~~~~G~r~G~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~~~~~~~~~ 350 (433)
|+++|+|+||+++ +++++. ++...+..........++.++|.++.+++.+.. .++++.+++.++++++
T Consensus 251 ~~l~GlRiG~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~ 326 (405)
T 3k7y_A 251 MSLYGERAGALHIVCKNQEEKK----IVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRI 326 (405)
T ss_dssp SCCTTTTEEEEEEECSSHHHHH----HHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccceEEEEEeCCHHHHH----HHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999864 333320 011222323333444567899998888887532 2457788889999999
Q ss_pred HHHHHHh----hcC----CeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc-ChhHH
Q 045431 351 IIVETFN----SLG----FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG-HRGNV 421 (433)
Q Consensus 351 ~l~~~l~----~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~l 421 (433)
.+.+.|+ ++| +.+..|++|+|+|+.++. +++..+ +++||.+.||. |||++. +++++
T Consensus 327 ~l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~----~~~~~L-~~~gV~v~p~~----------Ris~a~~~~~~i 391 (405)
T 3k7y_A 327 LFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLA----KIAEHL-KTHHIYIINNG----------RINVSGITKNNV 391 (405)
T ss_dssp HHHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGG----GGTTTT-TTTTEECCTTS----------EEEGGGCCTTHH
T ss_pred HHHHHHHhhhhhcCCCCCCccccCCceEEEecCCCH----HHHHHH-HHCCEeecCCC----------eEEEeccCHHHH
Confidence 9999999 776 577888999999998863 344566 78899999852 999865 89999
Q ss_pred HHHHHHHHHhh
Q 045431 422 LEACKRFKHLY 432 (433)
Q Consensus 422 ~~~l~~l~~~l 432 (433)
++++++|++++
T Consensus 392 ~~~~~~i~~~~ 402 (405)
T 3k7y_A 392 DYIADKICLSL 402 (405)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999876
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-45 Score=358.69 Aligned_cols=341 Identities=19% Similarity=0.284 Sum_probs=267.9
Q ss_pred CceEEecCCCCCCCChHH-HHH-HH---------HHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCC----
Q 045431 63 AEVISLGIGDTTEPIPEV-ITS-AL---------AKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIE---- 125 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~-~~~-a~---------~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~---- 125 (433)
+++|+|+.|.|+...++. .+. ++ .+.. ....+|++..|.++||+++++++.+ +...+
T Consensus 31 ~~~i~l~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~~~------~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~ 104 (425)
T 2r2n_A 31 KSMISLAGGLPNPNMFPFKTAVITVENGKTIQFGEEMM------KRALQYSPSAGIPELLSWLKQLQIKLHNPPTIHYPP 104 (425)
T ss_dssp TTCEECCCCCCCGGGCSEEEEEEEETTSCCEEECHHHH------HHHTSCCCTTCCHHHHHHHHHHHHHHHCCTTTTSCG
T ss_pred CCeEEcCCcCCCchhCCHHHHHHHHhhcccccccccch------hhhcCCCCCCCCHHHHHHHHHHHHHhcCCCCccccc
Confidence 358999999997443221 110 00 0111 1124788899999999999999976 44442
Q ss_pred ---CCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-C
Q 045431 126 ---EGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-L 200 (433)
Q Consensus 126 ---~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 200 (433)
+++|++|+|+++++.+ +..++++||+|++++|+|+++...++..| .+++.++.+.+ +++.+ +
T Consensus 105 ~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g------------~~~~~v~~~~~-~~d~~~l 171 (425)
T 2r2n_A 105 SQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQSLHPLG------------CNIINVASDES-GIVPDSL 171 (425)
T ss_dssp GGTCEEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHGGGT------------CEEEEECEETT-EECHHHH
T ss_pred cCCcCcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcC------------CEEEEeCcCCC-CCCHHHH
Confidence 3799999999999997 57788999999999999999999988888 47777777543 22221 2
Q ss_pred CC--------------CCCccEEEE-cCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCC
Q 045431 201 ST--------------VARTDIIFF-CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPG 264 (433)
Q Consensus 201 ~~--------------~~~~~~i~l-~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~ 264 (433)
++ .+++++|++ ++||||||.++|.+++++|+++|++||++||+||+|+++.+.+. +.++.+++.
T Consensus 172 ~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 251 (425)
T 2r2n_A 172 RDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDV 251 (425)
T ss_dssp HHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCT
T ss_pred HHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCcccccCCCCCCCCccccCC
Confidence 11 135788877 48999999999999999999999999999999999999888654 456667653
Q ss_pred CCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcC---C-hhHHHH
Q 045431 265 AKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPE---G-FKAVHE 340 (433)
Q Consensus 265 ~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~-~~~~~~ 340 (433)
.+++++++||||+++ +|+|+||++++++++ +.+.........+++.++|.++.++++.. . .+++++
T Consensus 252 -~~~~i~~~s~SK~~~-~GlRiG~~~~~~~l~--------~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~ 321 (425)
T 2r2n_A 252 -DGRVIRADSFSKIIS-SGLRIGFLTGPKPLI--------ERVILHIQVSTLHPSTFNQLMISQLLHEWGEEGFMAHVDR 321 (425)
T ss_dssp -TSCEEEEEESTTTTC-STTCCEEEEEEHHHH--------HHHHHHHHTTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCEEEEccchhhcc-CccceEEEecCHHHH--------HHHHHHHHHhcCCCCHHHHHHHHHHHHhcccchHHHHHHH
Confidence 568999999999998 999999999998875 66776666666778999999999998752 2 267889
Q ss_pred HHHHHHHHHHHHHHHHhhc--CC-eeecCCCccEEEEECCC-CChHHHHHHHHHcCCeEecCCCCCCCC---CCCeEEEe
Q 045431 341 VIGFYKENTDIIVETFNSL--GF-KVYGGKNAPYVWVQFPG-RSSWDVFSEILEKTHVVTTPGSGFGPG---GEGFIRVS 413 (433)
Q Consensus 341 ~~~~~~~~~~~l~~~l~~~--g~-~~~~~~~g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~~~---~~~~iRi~ 413 (433)
+++.++++++.+.+.|+++ |+ .+..|.+|+|+|++++. .+..+++...+.++||.+.||..|+.. +.+++||+
T Consensus 322 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis 401 (425)
T 2r2n_A 322 VIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGINDVKELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRAS 401 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTCSCCHHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCCCCHHHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEE
Confidence 9999999999999999985 76 46667899999999984 345554444455679999999998743 35799999
Q ss_pred ec-cChhHHHHHHHHHHHhh
Q 045431 414 AF-GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 414 ~~-~~~~~l~~~l~~l~~~l 432 (433)
++ .+++++++++++|++++
T Consensus 402 ~~~~~~~~i~~~~~~l~~~l 421 (425)
T 2r2n_A 402 FSSASPEQMDVAFQVLAQLI 421 (425)
T ss_dssp CSSCCHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHH
Confidence 86 69999999999999876
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-45 Score=360.34 Aligned_cols=371 Identities=17% Similarity=0.148 Sum_probs=269.9
Q ss_pred CCChhhHHHHHhccccccccccCCCCCCcHHHHHHHHHHHhcCCCCceEEecCCCCC---CCChHHHHHHHHHHHhhccc
Q 045431 18 AAPQEEKIAYKTKVSRNGNLGKLQAGYLFPEIARRKAAHMLKYPDAEVISLGIGDTT---EPIPEVITSALAKRSYALST 94 (433)
Q Consensus 18 ~LPs~r~la~~~~vs~~t~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~---~~~~~~~~~a~~~~~~~~~~ 94 (433)
.|||.|..++.+..+.++++.+.. ... . .+ .+|+|+.|.|+ +++|+.+.+++.+.+... .
T Consensus 3 ~~~~~~~~~~~l~~~~~~~~~~~~---------~l~----~--~~-~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~-~ 65 (422)
T 3d6k_A 3 AMSLKDYDAARLAQVREEVTAKYA---------ELK----A--KN-LSLDLTRGKPSAEQLDLSNDLLSLPGGDFRTK-D 65 (422)
T ss_dssp ---------------CHHHHHHHH---------HHH----H--TT-CCEECCCCSCCHHHHHTTGGGGGCSTTCCBCT-T
T ss_pred cccccCCCHHHHHhhHHHHHHHHH---------HHh----c--cC-CeEeCCCCCCChhhCCCcHHHHHHHHHHHhhc-c
Confidence 589999999999998877553211 111 1 11 37999999998 777777777766542110 0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHH--HHH-HHhcCC------------CCEEEEeCCCC
Q 045431 95 QEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDI--SRL-QIVFGS------------NVTMAVQDPSY 159 (433)
Q Consensus 95 ~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al--~~l-~~l~~~------------gd~Vl~~~p~~ 159 (433)
.....+|++..|.++||+++|+|+ ++++++|++|+|+++++ .++ ..++.+ +|+|++++|+|
T Consensus 66 ~~~~~~Y~~~~G~~~lr~~ia~~~----~~~~~~i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y 141 (422)
T 3d6k_A 66 GVDCRNYGGLLGIADIRELWAEAL----GLPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGY 141 (422)
T ss_dssp CCBTTSSCCSSCCHHHHHHHHHHH----TCCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCC
T ss_pred chhhhCCCCCCCCHHHHHHHHHHh----CCChhHEEEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCcc
Confidence 023568999999999999999998 78899999999999987 554 455555 34899999999
Q ss_pred hhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--C-CCccEEE-EcCCCCccccCCCHHHHHHHHHHH
Q 045431 160 PAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--V-ARTDIIF-FCSPNNPTGAAATREQLTRLVQFA 234 (433)
Q Consensus 160 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~-~~~~~i~-l~~p~nPtG~~~~~~~~~~i~~~a 234 (433)
+++...++..| .+++.++.+.+ +++.+ +++ . .++++|+ +++||||||.+++.+++++|+++|
T Consensus 142 ~~~~~~~~~~g------------~~~~~v~~~~~-g~d~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~ 208 (422)
T 3d6k_A 142 DRHFTITEHFG------------FEMINVPMTDE-GPDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMS 208 (422)
T ss_dssp HHHHHHHHHHT------------CEEEEEEEETT-EECHHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCC
T ss_pred HHHHHHHHHcC------------CEEEecCCCCC-CCCHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHH
Confidence 99999999999 47888887654 33222 221 2 3688888 579999999999999999999999
Q ss_pred H-HcCCEEEEeccccc--cccCCC-CCccccc---CCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHH
Q 045431 235 K-DNGSIIVYDSAYAL--YISDDN-PRSIFEI---PGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDF 307 (433)
Q Consensus 235 ~-~~~~~li~De~~~~--~~~~~~-~~~~~~~---~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~ 307 (433)
+ +||++||+||+|++ +..++. ..++..+ .+..+++++++||||+ +++|+|+||++++++++ +.+
T Consensus 209 ~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~GlriG~~~~~~~l~--------~~l 279 (422)
T 3d6k_A 209 TAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKI-THAGSGVSFFASSKENI--------EWY 279 (422)
T ss_dssp CSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTT-SCTTSSCEEEECCHHHH--------HHH
T ss_pred hhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhh-cCcccceEEEEeCHHHH--------HHH
Confidence 9 99999999999986 444332 2344332 1235789999999999 56999999999998875 667
Q ss_pred HHHHhhccCCCcHHHHHHHHHhcCcCC-h-hHHHHHHHHHHHHHHHHHHHHhh----cC-CeeecCCCccEEEEECCCCC
Q 045431 308 NRIVCTCFNGASNISQAGGLACLSPEG-F-KAVHEVIGFYKENTDIIVETFNS----LG-FKVYGGKNAPYVWVQFPGRS 380 (433)
Q Consensus 308 ~~~~~~~~~~~~~~~q~~~~~~l~~~~-~-~~~~~~~~~~~~~~~~l~~~l~~----~g-~~~~~~~~g~~~~~~~~~~~ 380 (433)
.........+++.++|.++.+++++.+ . ++++++++.++++++.+.+.|.+ .| +.+..|.+|+|+|++++..+
T Consensus 280 ~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~~ 359 (422)
T 3d6k_A 280 ASHANVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVVPGT 359 (422)
T ss_dssp HHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSBSSCEEEEESTTC
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCcceEEEEECCCCC
Confidence 766666666789999999999998622 2 57888999999999998888865 33 67677789999999998544
Q ss_pred hHHHHHHHHHcCCeEecC-CCCCC--C-CCCCeEEEeec-cChhHHHHHHHHHHHhh
Q 045431 381 SWDVFSEILEKTHVVTTP-GSGFG--P-GGEGFIRVSAF-GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 381 ~~~~~~~l~~~~gi~v~~-g~~f~--~-~~~~~iRi~~~-~~~~~l~~~l~~l~~~l 432 (433)
...+ ..+++++||.+.| |..|. . .+++++||++. .+++++++++++|++++
T Consensus 360 ~~~~-~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~~~l 415 (422)
T 3d6k_A 360 ASRV-VELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSLPPVAELEVAMDGFATCV 415 (422)
T ss_dssp HHHH-HHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHCCeEEEcCccccCCCCCCCCCeEEEecCCCCHHHHHHHHHHHHHHH
Confidence 4444 4556677999999 55564 1 24689999987 59999999999999875
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-45 Score=361.16 Aligned_cols=333 Identities=19% Similarity=0.280 Sum_probs=262.3
Q ss_pred hHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc---cCCCCCCcEEEcCChHHHHHH-HHHhcCCCC---
Q 045431 78 PEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK---DLGIEEGDIFVSDGAKCDISR-LQIVFGSNV--- 150 (433)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~---~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd--- 150 (433)
|..+++++.+++..... .....|++..|.++||+++++|+.+ ++.+++++|++|+|+++++.+ +..++++||
T Consensus 103 P~~~~~~~~~~l~~~~~-~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~~~ 181 (498)
T 3ihj_A 103 PEDAKKRARRILQACGG-NSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSR 181 (498)
T ss_dssp CHHHHHHHHHHHHHC-----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCCCGGGS
T ss_pred CHHHHHHHHHHHHhccC-CCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCCC
Confidence 66677777777765321 2456899999999999999999975 366789999999999999997 577788875
Q ss_pred -EEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCC-----C-----CccEEEEcCCCCccc
Q 045431 151 -TMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV-----A-----RTDIIFFCSPNNPTG 219 (433)
Q Consensus 151 -~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-----~~~~i~l~~p~nPtG 219 (433)
.|+++.|+|+.+...+...| ..++.++++.++++..+++.. + ++++|+++|||||||
T Consensus 182 d~Vlv~~p~y~~~~~~~~~~g------------~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG 249 (498)
T 3ihj_A 182 TGVMIPIPQYPLYSAVISELD------------AIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTG 249 (498)
T ss_dssp EEEEEEESCCTHHHHHHHHTT------------CEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTC
T ss_pred CEEEEeCCCchhHHHHHHHcC------------CEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCC
Confidence 99999999999999999998 488888888776665554321 1 589999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCcccccCC-------CCcceEEEecccccc-cccccceeee
Q 045431 220 AAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN--PRSIFEIPG-------AKEVAIETSSFSKYA-GFTGVRLGWT 289 (433)
Q Consensus 220 ~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~--~~~~~~~~~-------~~~~vi~i~S~sK~~-~~~G~r~G~l 289 (433)
.++|.+++++|+++|++||++||+||+|+++.+++. +.++..+.. ...++|+++||||.+ |++|+|+||+
T Consensus 250 ~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~ 329 (498)
T 3ihj_A 250 QVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYM 329 (498)
T ss_dssp CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEE
T ss_pred CcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEE
Confidence 999999999999999999999999999999888753 455554311 123579999999999 7899999999
Q ss_pred e---ccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcC-----Ch----hHHHHHHHHHHHHHHHHHHHHh
Q 045431 290 V---IPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPE-----GF----KAVHEVIGFYKENTDIIVETFN 357 (433)
Q Consensus 290 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-----~~----~~~~~~~~~~~~~~~~l~~~l~ 357 (433)
+ .+++++ +.+..... ...+++.+.|.++..++... .. ++.+++++.++++++.+.+.|+
T Consensus 330 ~~~~~~~~l~--------~~l~~~~~-~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~ 400 (498)
T 3ihj_A 330 EVINLHPEIK--------GQLVKLLS-VRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFN 400 (498)
T ss_dssp EEESCCHHHH--------HHHHHHHH-HSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCHHHH--------HHHHHHHh-ccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8 466664 55655544 45567899999888888741 11 2356778899999999999999
Q ss_pred hc-CCeeecCCCccEEEEECC------------CCChHHH-HHHHHHcCCeEecCCCCCCC-CCCCeEEEeeccChhHHH
Q 045431 358 SL-GFKVYGGKNAPYVWVQFP------------GRSSWDV-FSEILEKTHVVTTPGSGFGP-GGEGFIRVSAFGHRGNVL 422 (433)
Q Consensus 358 ~~-g~~~~~~~~g~~~~~~~~------------~~~~~~~-~~~l~~~~gi~v~~g~~f~~-~~~~~iRi~~~~~~~~l~ 422 (433)
++ |+.+.++.+++|+|+++. +....++ +..+++++||.+.||+.|+. .+++++|+++..++++++
T Consensus 401 ~~~g~~~~~p~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~~~~e~l~ 480 (498)
T 3ihj_A 401 QVPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVEKLK 480 (498)
T ss_dssp TSTTEECCCCCBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECCSCHHHHH
T ss_pred cCCCcEecCCCeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeCCCHHHHH
Confidence 98 999999999999998764 2233443 56777778999999999984 567899999988899999
Q ss_pred HHHHHHHHhh
Q 045431 423 EACKRFKHLY 432 (433)
Q Consensus 423 ~~l~~l~~~l 432 (433)
+++++|++++
T Consensus 481 ~~i~~L~~~~ 490 (498)
T 3ihj_A 481 TVLQKVKDFH 490 (498)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-44 Score=349.94 Aligned_cols=342 Identities=16% Similarity=0.201 Sum_probs=278.8
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHHHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDIS 140 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~al~ 140 (433)
+++|+|+.+++++++|+.+.+++.+.+.. ....|++. ..++|+++++++.+ ++.+++++|++|+|+++++.
T Consensus 31 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~ 103 (399)
T 1c7n_A 31 NEVVPLSVADMEFKNPPELIEGLKKYLDE-----TVLGYTGP--TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVF 103 (399)
T ss_dssp TTCCCCCSSSCSSCCCHHHHHHHHHHHHH-----CCCSSBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHH
T ss_pred CCceeeeecCCCCCCCHHHHHHHHHHHhc-----CCCCCCCC--cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHH
Confidence 36899999999888899999999998863 23567553 89999999999975 55578899999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccC-CcccCCC---C---CCCccEEEEc
Q 045431 141 R-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAEN-GFFPDLS---T---VARTDIIFFC 212 (433)
Q Consensus 141 ~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~---~~~~~~i~l~ 212 (433)
+ +..++++||+|++++|+|+++...+...| .+++.++.++++ .+..+++ + .+++++|+++
T Consensus 104 ~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~ 171 (399)
T 1c7n_A 104 NAVREFTKPGDGVIIITPVYYPFFMAIKNQE------------RKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFC 171 (399)
T ss_dssp HHHHHHCCTTCEEEECSSCCTHHHHHHHTTT------------CEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEE
T ss_pred HHHHHhcCCCCEEEEcCCCcHhHHHHHHHcC------------CEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEEc
Confidence 7 57778999999999999999999888888 477777775332 2223322 1 2578999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCC-CCcceEEEecccccccccccceeeee
Q 045431 213 SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPG-AKEVAIETSSFSKYAGFTGVRLGWTV 290 (433)
Q Consensus 213 ~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~-~~~~vi~i~S~sK~~~~~G~r~G~l~ 290 (433)
+||||||.++|.+++++|+++|++||+++|+||+|+++.+++. +.++..++. ..+++++++|+||++|++|+|+||++
T Consensus 172 ~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~ 251 (399)
T 1c7n_A 172 SPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNII 251 (399)
T ss_dssp SSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEE
T ss_pred CCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhccccchheEEEE
Confidence 9999999999999999999999999999999999999887653 445655531 13578999999999998999999999
Q ss_pred ccc-cccccCCcchhHHHHHHHhhcc-CCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhh-c-CCeeecC
Q 045431 291 IPK-ELLFSDGFPVAKDFNRIVCTCF-NGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNS-L-GFKVYGG 366 (433)
Q Consensus 291 ~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~-g~~~~~~ 366 (433)
+++ +++ +.+........ .+++.++|.++.++++.. .+++++.+++++++++.+.+.|++ + |+.+..+
T Consensus 252 ~~~~~~~--------~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 322 (399)
T 1c7n_A 252 IKNPDIR--------ERFTKSRDATSGMPFTTLGYKACEICYKEC-GKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLI 322 (399)
T ss_dssp CCCHHHH--------HHHHHHHHHTTCCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCC
T ss_pred ECCHHHH--------HHHHHHHhhcccCCCCHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEecC
Confidence 975 453 55655544432 257899999888888743 567899999999999999999998 5 8888888
Q ss_pred CCccEEEEECCC--CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 367 KNAPYVWVQFPG--RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 367 ~~g~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
.+++++|++++. .+..++...+++++||.+.||..|+..+++++||++..+++++++++++|++++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~l~~~l~~l~~~l 390 (399)
T 1c7n_A 323 EGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKAL 390 (399)
T ss_dssp SBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEcccCCCCHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEeccCHHHHHHHHHHHHHHH
Confidence 788899999973 466777777776679999999988755678999999888899999999998875
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-44 Score=344.94 Aligned_cols=333 Identities=23% Similarity=0.371 Sum_probs=274.7
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-H
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-L 142 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l 142 (433)
++|+|+.|.++++.|+.+.+++.+++.+ ...|++..|..+||+++++++ ++++++|++|+|+++++.+ +
T Consensus 26 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~------~~~y~~~~~~~~l~~~la~~~----~~~~~~v~~~~g~~~a~~~~~ 95 (381)
T 1v2d_A 26 GAVNLGQGFPSNPPPPFLLEAVRRALGR------QDQYAPPAGLPALREALAEEF----AVEPESVVVTSGATEALYVLL 95 (381)
T ss_dssp TCEECCCCSCSSCCCHHHHHHHHHHTTT------SCSCCCTTCCHHHHHHHHHHH----TSCGGGEEEESSHHHHHHHHH
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHHH------hcCCCCCCCCHHHHHHHHHhc----CCChhhEEEcCChHHHHHHHH
Confidence 4799999999888899999999998753 346877779999999999997 7888999999999999997 5
Q ss_pred HHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecC--ccCCcccC---CCC--CCCccEEEEcCCC
Q 045431 143 QIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCT--AENGFFPD---LST--VARTDIIFFCSPN 215 (433)
Q Consensus 143 ~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~--~~~~~~i~l~~p~ 215 (433)
..++++||+|++++|+|+++...++..| .+++.++.+ ++ ++..+ +++ .+++++|++++||
T Consensus 96 ~~~~~~gd~Vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~~ 162 (381)
T 1v2d_A 96 QSLVGPGDEVVVLEPFFDVYLPDAFLAG------------AKARLVRLDLTPE-GFRLDLSALEKALTPRTRALLLNTPM 162 (381)
T ss_dssp HHHCCTTCEEEEEESCCTTHHHHHHHTT------------CEEEEEECEEETT-EEECCHHHHHTTCCTTEEEEEEESSC
T ss_pred HHhCCCCCEEEEcCCCchhHHHHHHHcC------------CEEEEEeCCCCCc-cCCcCHHHHHHhcCcCCEEEEECCCC
Confidence 6778999999999999999998888888 477777775 22 12222 222 2578999999999
Q ss_pred CccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccc
Q 045431 216 NPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKEL 295 (433)
Q Consensus 216 nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~ 295 (433)
||||.+++.+++++|+++|++||+++|+||+|+++.++..+.++..+ ..+++++++|+||++|++|+|+||+++++++
T Consensus 163 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~--~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~ 240 (381)
T 1v2d_A 163 NPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREF--APERTFTVGSAGKRLEATGYRVGWIVGPKEF 240 (381)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHH--CTTTEEEEEEHHHHTTCGGGCCEEEECCTTT
T ss_pred CCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHh--cCCCEEEEeechhhcCCcccceEEEEeCHHH
Confidence 99999999999999999999999999999999988773224455554 2467899999999999899999999999887
Q ss_pred cccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCC-hhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEE
Q 045431 296 LFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEG-FKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWV 374 (433)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~ 374 (433)
+ +.+.........+.+.+.|.++.++++... .+++++++++++++++++.+.|++.|+.+..+.+|+|+|+
T Consensus 241 ~--------~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 312 (381)
T 1v2d_A 241 M--------PRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMA 312 (381)
T ss_dssp H--------HHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTCCEECCSBSSEEEE
T ss_pred H--------HHHHHHHhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHCCCEecCCCcceEEEE
Confidence 5 566655555556678899988888887332 3567889999999999999999999999888878899999
Q ss_pred ECCCCChHHHHHHHHHcCCeEecCCCCCCC--CCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 375 QFPGRSSWDVFSEILEKTHVVTTPGSGFGP--GGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 375 ~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~--~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
+++..+ +..+++++||.+.||..|+. .+.+++||++..+++++++++++|+++++
T Consensus 313 ~~~~~~----~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~~~~~i~~~~~~l~~~l~ 369 (381)
T 1v2d_A 313 ELPGWD----AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRVVN 369 (381)
T ss_dssp ECTTCC----HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHHHHHHC-
T ss_pred ecChHh----HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHh
Confidence 998542 55566677999999998864 34689999987799999999999998763
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-44 Score=350.04 Aligned_cols=344 Identities=19% Similarity=0.277 Sum_probs=287.0
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDI 139 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~al 139 (433)
++++|+|+.++++++.|+.+.+++.+.+.. ....|++ ...++++++++++.+ ++.+++++|++|+|+++++
T Consensus 60 g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~--~~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~ 132 (421)
T 3l8a_A 60 NPELLQMWVADMDFLPVPEIKEAIINYGRE-----HIFGYNY--FNDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAI 132 (421)
T ss_dssp CTTCEECCSSCCCSCCCHHHHHHHHHHHHH-----CCSSCBC--CCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHH
T ss_pred CCCeeecccCCCCCCCCHHHHHHHHHHHhc-----CCcCCCC--CCHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHH
Confidence 567999999999999999999999998864 3346654 348999999999986 5557899999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecC-ccCCcccCCCC-----C-CCccEEEE
Q 045431 140 SR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCT-AENGFFPDLST-----V-ARTDIIFF 211 (433)
Q Consensus 140 ~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~-~~~~~i~l 211 (433)
.+ +..++++||+|++++|+|+++...+...| .+++.++.+ .++.+..+++. . +++++|++
T Consensus 133 ~~a~~~~~~~gd~Vi~~~~~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil 200 (421)
T 3l8a_A 133 SIALQAFSEKGDAVLINSPVYYPFARTIRLND------------HRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLL 200 (421)
T ss_dssp HHHHHHHSCTEEEEEEEESCCHHHHHHHHHTT------------EEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHhcCCCCEEEECCCCcHHHHHHHHHCC------------CEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEE
Confidence 97 67778999999999999999999999888 477777775 33333334322 1 58999999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCC-CCcceEEEecccccccccccceeee
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPG-AKEVAIETSSFSKYAGFTGVRLGWT 289 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~-~~~~vi~i~S~sK~~~~~G~r~G~l 289 (433)
++||||||.+++.+++++|+++|++||+++|+||+|+++.+.+. +.++..++. ..++++++.|+||++|++|+|+||+
T Consensus 201 ~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~ 280 (421)
T 3l8a_A 201 CSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFA 280 (421)
T ss_dssp ESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEE
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeE
Confidence 99999999999999999999999999999999999999888764 455666542 2467899999999999899999999
Q ss_pred ecc-ccccccCCcchhHHHHHHH-hhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecC
Q 045431 290 VIP-KELLFSDGFPVAKDFNRIV-CTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGG 366 (433)
Q Consensus 290 ~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~ 366 (433)
+++ +++. +.+.... .....+.+.+++.++.++++. ..+++++++++++++++.+.+.|+++ ++.+..+
T Consensus 281 ~~~~~~l~--------~~~~~~~~~~~~~~~n~~~~~a~~aal~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~~~ 351 (421)
T 3l8a_A 281 IIQNESLR--------RKFQYRQLANNQHEVPTVGMIATQAAFQY-GKPWLEELKTVIEGNIKLVIKELEAKTKIKVMEP 351 (421)
T ss_dssp ECCSHHHH--------HHHHHHHHHTTCSCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCSCEEECC
T ss_pred EcCCHHHH--------HHHHHHHHhcccCCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhCCCceEeCC
Confidence 998 5553 5565544 333446889999988888873 45678999999999999999999986 8999888
Q ss_pred CCccEEEEECCC--CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 367 KNAPYVWVQFPG--RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 367 ~~g~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
.+++++|++++. .+..++...+++++||.+.||..|+..+++++||++..+++++++++++|+++++
T Consensus 352 ~~~~~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 352 EGTYLVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVATPKNTVQEALSRIISVFG 420 (421)
T ss_dssp SBSSEEEEECGGGTCCTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHC-
T ss_pred CeeEEEEEeccccCCCHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 889999999973 4667788888777899999999998777899999998899999999999998864
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-44 Score=345.46 Aligned_cols=338 Identities=17% Similarity=0.256 Sum_probs=274.0
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHH-HHHHHHHHHhc--cCCCCCCcEEEcCChHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKP-LRAAIASTFYK--DLGIEEGDIFVSDGAKCDIS 140 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~-lr~~la~~l~~--~~~~~~~~i~~~~G~~~al~ 140 (433)
++|+|+.+++++++|+.+.+++.+.+.. ....|++. ..+ ||+++++++.+ ++.+++++|++|+|+++++.
T Consensus 29 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~--~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~ 101 (390)
T 1d2f_A 29 DLLPFTISDMDFATAPCIIEALNQRLMH-----GVFGYSRW--KNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVS 101 (390)
T ss_dssp -CEECCSSSCSSCCCHHHHHHHHHHHTT-----CCCCCCCS--CCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHH
T ss_pred CeeEeeecCCCCCCCHHHHHHHHHHHhC-----CCCCCCCC--ChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHH
Confidence 6899999999888899999999998752 34577553 778 99999999975 55578899999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccC-CcccCCCC-----C-CCccEEEEc
Q 045431 141 R-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAEN-GFFPDLST-----V-ARTDIIFFC 212 (433)
Q Consensus 141 ~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~-~~~~~i~l~ 212 (433)
+ +..++++||+|++++|+|+++...++..| .+++.++.+.++ .+..+++. . .++++|+++
T Consensus 102 ~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~ 169 (390)
T 1d2f_A 102 ELIRQWSETGEGVVIHTPAYDAFYKAIEGNQ------------RTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLC 169 (390)
T ss_dssp HHHHHSSCTTCEEEEEESCCHHHHHHHHHTT------------CEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEE
T ss_pred HHHHHhcCCCCEEEEcCCCcHHHHHHHHHCC------------CEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEe
Confidence 7 57778999999999999999999998888 477778876542 23233221 1 378999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCC-cceEEEecccccccccccceeeee
Q 045431 213 SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAK-EVAIETSSFSKYAGFTGVRLGWTV 290 (433)
Q Consensus 213 ~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~-~~vi~i~S~sK~~~~~G~r~G~l~ 290 (433)
+||||||.+++.+++++|+++|++||++||+||+|+++.+++. +.++..++... + + ++||||.+|++|+|+||++
T Consensus 170 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d--~-~~s~sK~~~~~G~r~G~~~ 246 (390)
T 1d2f_A 170 SPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWA--L-LTSGSKSFNIPALTGAYGI 246 (390)
T ss_dssp SSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEE--E-EECSHHHHTCGGGCCEEEE
T ss_pred CCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhhHh--h-ccCccHhhcccChhheEEE
Confidence 9999999999999999999999999999999999999887653 44555553211 3 3 9999999998999999999
Q ss_pred cc-ccccccCCcchhHHHHHHHh-hcc-CCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhh-c-CCeeec
Q 045431 291 IP-KELLFSDGFPVAKDFNRIVC-TCF-NGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNS-L-GFKVYG 365 (433)
Q Consensus 291 ~~-~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~-g~~~~~ 365 (433)
++ ++++ +.+..... ... .+++.+.|.++.++++. ..+++++.+++++++++.+.+.|++ + |+.+.+
T Consensus 247 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 317 (390)
T 1d2f_A 247 IENSSSR--------DAYLSALKGRDGLSSPSVLALTAHIAAYQQ-GAPWLDALRIYLKDNLTYIADKMNAAFPELNWQI 317 (390)
T ss_dssp ECSHHHH--------HHHHHHHHTTSCCCSCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCC
T ss_pred ECCHHHH--------HHHHHHHhhhcccCCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEec
Confidence 86 4553 55655444 233 36788999888888874 3467889999999999999999998 5 888887
Q ss_pred CCCccEEEEECCC--CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 366 GKNAPYVWVQFPG--RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 366 ~~~g~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+.+++++|++++. .+..++...+++++||.+.||..|+..+++++||++..+++++++++++|++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~~l 386 (390)
T 1d2f_A 318 PQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAI 386 (390)
T ss_dssp CSBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred CCccEEEEEEccccCCCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 7788899999974 466777777775679999999988755578999999888899999999999876
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=353.79 Aligned_cols=345 Identities=18% Similarity=0.306 Sum_probs=278.8
Q ss_pred CCceEEecCCCCCC--CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCC-CCCCcEEEcCChH
Q 045431 62 DAEVISLGIGDTTE--PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLG-IEEGDIFVSDGAK 136 (433)
Q Consensus 62 ~~~~i~l~~g~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~-~~~~~i~~~~G~~ 136 (433)
++++|+|+.|.++. .+++.+.+++.+.+.... .....|++..|..+||+++++++.+ ++. +++++|++|+|++
T Consensus 42 ~~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~ 119 (425)
T 1vp4_A 42 DKDAISFGGGVPDPETFPRKELAEIAKEIIEKEY--HYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQ 119 (425)
T ss_dssp STTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSH--HHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHH
T ss_pred CCCceeCCCCCCCcccCCHHHHHHHHHHHHhhcc--hhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHH
Confidence 45689999998753 367889999998886421 1245788888999999999999975 444 7789999999999
Q ss_pred HHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--C--------C
Q 045431 137 CDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--V--------A 204 (433)
Q Consensus 137 ~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~--------~ 204 (433)
+++.+ +..++++||+|++++|+|+++...++..| .+++.++.+++ +++.+ +++ . .
T Consensus 120 ~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g------------~~~~~v~~~~~-~~d~~~l~~~l~~~~~~~~~~ 186 (425)
T 1vp4_A 120 QALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYL------------ANFVVVPLEDD-GMDLNVLERKLSEFDKNGKIK 186 (425)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTT------------CEEEEEEEETT-EECHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcC------------CEEEEeccCCC-CCCHHHHHHHHHhhhhcccCC
Confidence 99987 57778999999999999999999888888 47777777543 22222 221 1 2
Q ss_pred CccEEE-EcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEeccccccccc
Q 045431 205 RTDIIF-FCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFT 282 (433)
Q Consensus 205 ~~~~i~-l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~ 282 (433)
++++|+ +++||||||.++|.+++++|+++|++||++||+||+|+++.+++. +.++..++. .+++++++||||++| +
T Consensus 187 ~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~-~~~~i~~~s~sK~~~-~ 264 (425)
T 1vp4_A 187 QVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGG-PERVVLLNTFSKVLA-P 264 (425)
T ss_dssp GEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHC-TTTEEEEEESTTTTC-G
T ss_pred CceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCC-CCCEEEEeccccccc-c
Confidence 678875 679999999999999999999999999999999999999887654 355655542 457899999999999 9
Q ss_pred ccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-hHHHHHHHHHHHHHHHHHHHHhhc--
Q 045431 283 GVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-KAVHEVIGFYKENTDIIVETFNSL-- 359 (433)
Q Consensus 283 G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~-- 359 (433)
|+|+||++++++++ +.+.........+.+.++|.++.++++.... +++++.+++++++++.+.+.|++.
T Consensus 265 G~r~G~~~~~~~~~--------~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 336 (425)
T 1vp4_A 265 GLRIGMVAGSKEFI--------RKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFS 336 (425)
T ss_dssp GGCEEEEECCHHHH--------HHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHST
T ss_pred ccceEEEeeCHHHH--------HHHHHHhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999998774 5666555554456789999999999985433 578899999999999999999885
Q ss_pred ---CCeeecCCCccEEEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCC--CCCeEEEeecc-ChhHHHHHHHHHHHhh
Q 045431 360 ---GFKVYGGKNAPYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPG--GEGFIRVSAFG-HRGNVLEACKRFKHLY 432 (433)
Q Consensus 360 ---g~~~~~~~~g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~--~~~~iRi~~~~-~~~~l~~~l~~l~~~l 432 (433)
|+.+..+.+|+|+|++++ +.+..++...++++ ||.+.||..|+.. +++++||++.. +++++++++++|++++
T Consensus 337 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~g~~f~~~~~~~~~iRis~~~~~~e~i~~~l~~l~~~l 415 (425)
T 1vp4_A 337 DIPGVKWVKSEGGLFIWLTLPEGFDTWEMFEYAKRK-KVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREVV 415 (425)
T ss_dssp TSTTCEECCCSBSSEEEEECCTTCCTTTTHHHHHHH-TEECEEGGGGCTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHH
T ss_pred CCCceEEecCCccEEEEEEcCCCCCHHHHHHHHHHC-CCEEECchhhcCCCCCCCeEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 688877778999999998 34556777787777 9999999988643 46899999865 7899999999999875
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-44 Score=355.59 Aligned_cols=334 Identities=23% Similarity=0.316 Sum_probs=268.4
Q ss_pred ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHHHHH-HHHhc-CCCCEE
Q 045431 77 IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDISR-LQIVF-GSNVTM 152 (433)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~al~~-l~~l~-~~gd~V 152 (433)
.|..+++++.+.+..... .....|++..|.++||+++++++.+ ++.+++++|++|+|+++++.+ +..++ ++||.|
T Consensus 107 ~p~~~~~~a~~~l~~~~~-~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~V 185 (500)
T 3tcm_A 107 FSADSISRAKQILAMIPG-RATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGI 185 (500)
T ss_dssp SCHHHHHHHHHHHTTSTT-SCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCSTTEEE
T ss_pred CCHHHHHHHHHHHHcCCC-CcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCEE
Confidence 566677777777764310 2567899999999999999999974 667889999999999999997 56677 799999
Q ss_pred EEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCC-----------CCccEEEEcCCCCccccC
Q 045431 153 AVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV-----------ARTDIIFFCSPNNPTGAA 221 (433)
Q Consensus 153 l~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~i~l~~p~nPtG~~ 221 (433)
++++|+|+.+...++..| .+++.++++.++++..+++.. .++++|+++|||||||.+
T Consensus 186 lv~~p~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~ 253 (500)
T 3tcm_A 186 LVPIPQYPLYSASIALHG------------GALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQV 253 (500)
T ss_dssp EEEESCCTHHHHHHHHTT------------CEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCC
T ss_pred EEeCCCcHhHHHHHHHcC------------CEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCccc
Confidence 999999999999999999 478888887765555554321 168899999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCcccc----cC--CCCcceEEEecccccc-cccccceeeeec-
Q 045431 222 ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN--PRSIFE----IP--GAKEVAIETSSFSKYA-GFTGVRLGWTVI- 291 (433)
Q Consensus 222 ~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~--~~~~~~----~~--~~~~~vi~i~S~sK~~-~~~G~r~G~l~~- 291 (433)
+|.+++++|+++|++||+++|+||+|+++.+++. ..++.. ++ ....++++++||||++ |++|+|+||+++
T Consensus 254 ~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~ 333 (500)
T 3tcm_A 254 LAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEIT 333 (500)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEe
Confidence 9999999999999999999999999999888542 344432 21 1123579999999999 889999999998
Q ss_pred --cccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCC--------h-hHHHHHHHHHHHHHHHHHHHHhhc-
Q 045431 292 --PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEG--------F-KAVHEVIGFYKENTDIIVETFNSL- 359 (433)
Q Consensus 292 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~--------~-~~~~~~~~~~~~~~~~l~~~l~~~- 359 (433)
+++++ +.+..... ...+++.+.|.++..++.... + +++++++++++++++.+.+.|+++
T Consensus 334 ~~~~~~~--------~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~ 404 (500)
T 3tcm_A 334 GFSAPVR--------EQIYKIAS-VNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLE 404 (500)
T ss_dssp SCCTTHH--------HHHHHHHH-TTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred CCCHHHH--------HHHHHHHh-cccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 77764 55655443 445688999998888887421 2 456788889999999999999998
Q ss_pred CCeeecCCCccEEEEECC--C----------CC-hHHHHHHHHHcCCeEecCCCCCCC-CCCCeEEEeeccChhHHHHHH
Q 045431 360 GFKVYGGKNAPYVWVQFP--G----------RS-SWDVFSEILEKTHVVTTPGSGFGP-GGEGFIRVSAFGHRGNVLEAC 425 (433)
Q Consensus 360 g~~~~~~~~g~~~~~~~~--~----------~~-~~~~~~~l~~~~gi~v~~g~~f~~-~~~~~iRi~~~~~~~~l~~~l 425 (433)
|+.+..+.+++|+|+++. . .. ...++..+++++||.+.||+.|+. .+.++||+++..+++++++++
T Consensus 405 g~~~~~~~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~i 484 (500)
T 3tcm_A 405 GITCNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAVI 484 (500)
T ss_dssp TEECCCCCBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESCSCTTTHHHHH
T ss_pred CcEEecCCeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEECCCHHHHHHHH
Confidence 999999999999997654 1 11 223345777778999999999984 567899999988899999999
Q ss_pred HHHHHhh
Q 045431 426 KRFKHLY 432 (433)
Q Consensus 426 ~~l~~~l 432 (433)
++|++++
T Consensus 485 ~~l~~~~ 491 (500)
T 3tcm_A 485 SRFTVFH 491 (500)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998875
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-44 Score=341.34 Aligned_cols=327 Identities=16% Similarity=0.277 Sum_probs=269.5
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR- 141 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~- 141 (433)
+++|+|+.+++++++|+.+.+++.+.+.. ...|++..+ .+||+++|+++ ++++++|++|+|+++++.+
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~------~~~y~~~~~-~~lr~~la~~~----~~~~~~v~~~~g~~~a~~~~ 98 (365)
T 3get_A 30 KEVIKLASNENPFGTPPKAIECLRQNANK------AHLYPDDSM-IELKSTLAQKY----KVQNENIIIGAGSDQVIEFA 98 (365)
T ss_dssp SCCEECSSCCCTTCSCHHHHHHHHHHGGG------TTSCCCTTC-HHHHHHHHHHH----TCCGGGEEEESSHHHHHHHH
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHHHHh------hccCCCCCh-HHHHHHHHHHh----CCCcceEEECCCHHHHHHHH
Confidence 57999999999999999999999998752 356766655 99999999998 7888999999999999997
Q ss_pred HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEEcCCCC
Q 045431 142 LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFFCSPNN 216 (433)
Q Consensus 142 l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~~p~n 216 (433)
+..++++||+|++++|+|+++...++..| .+++.++.+ +.++ .+++. .+++++|++++|||
T Consensus 99 ~~~l~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~-~~~~-~d~~~l~~~l~~~~~~v~~~~p~n 164 (365)
T 3get_A 99 IHSKLNSKNAFLQAGVTFAMYEIYAKQCG------------AKCYKTQSI-THNL-DEFKKLYETHKDEIKLIFLCLPNN 164 (365)
T ss_dssp HHHHCCTTCEEEECSSCCTHHHHHHHHHT------------CEEEECSSS-SCCH-HHHHHHHHHTTTTEEEEEEESSCT
T ss_pred HHHHhCCCCEEEEeCCChHHHHHHHHHcC------------CEEEEEecC-CCCC-CCHHHHHHHhCCCCCEEEEcCCCC
Confidence 57788999999999999999999999998 478888872 2233 33321 36899999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHcCCEEEEecccccccc--C-CCCCcccccCCCCcceEEEecccccccccccceeeeeccc
Q 045431 217 PTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYIS--D-DNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPK 293 (433)
Q Consensus 217 PtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~--~-~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~ 293 (433)
|||.+++.+++++|+++| ++|+++|+||+|+++.+ . +.+.+........+++++++||||.+|++|+|+||+++++
T Consensus 165 ptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~ 243 (365)
T 3get_A 165 PLGECLDASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIANA 243 (365)
T ss_dssp TTCCCCCHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEECH
T ss_pred CCCCCcCHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEcCH
Confidence 999999999999999998 57999999999998874 3 2233333322224678999999999999999999999988
Q ss_pred cccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEE
Q 045431 294 ELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVW 373 (433)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~ 373 (433)
+++ +.+..... ..+.+.+.|.++.+++++. +++++.+++++++++.+.+.|+++|+.+.++ .+.|+|
T Consensus 244 ~~~--------~~~~~~~~--~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~~~~~ 310 (365)
T 3get_A 244 NII--------SAFYKLRA--PFNVSNLALKAAVAAMDDD--EFTEKTLENNFSQMELYKEFAKKHNIKIIDS-YTNFIT 310 (365)
T ss_dssp HHH--------HHHHHHSC--TTCSCHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHHHHHHHTTCEECCC-SSSEEE
T ss_pred HHH--------HHHHHhcC--CCCcCHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHhCCCEECCC-CCeEEE
Confidence 774 55554433 3458999999999999843 6789999999999999999999999887654 677899
Q ss_pred EECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 374 VQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 374 ~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
++++..+..++...+.+ +||.+.||..|+ ++++||++. +++++++++++|+++++
T Consensus 311 ~~~~~~~~~~~~~~l~~-~gi~v~~g~~~~---~~~iRis~~-~~~~i~~l~~~l~~~l~ 365 (365)
T 3get_A 311 YFFDEKNSTDLSEKLLK-KGIIIRNLKSYG---LNAIRITIG-TSYENEKFFTEFDKILR 365 (365)
T ss_dssp EECSSSCHHHHHHHHHT-TTEECEECGGGT---CSEEEEECC-CHHHHHHHHHHHHHHHC
T ss_pred EECCCCCHHHHHHHHHH-CCEEEEECccCC---CCEEEEEcC-CHHHHHHHHHHHHHHhC
Confidence 99985566667666655 599999999887 689999986 88999999999999874
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-44 Score=346.18 Aligned_cols=340 Identities=22% Similarity=0.310 Sum_probs=275.6
Q ss_pred CceEEecCCCCCC--CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHH
Q 045431 63 AEVISLGIGDTTE--PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDIS 140 (433)
Q Consensus 63 ~~~i~l~~g~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~ 140 (433)
+++|+|+.|.++. .+++.+.+++.+.+.+.. .....|++..|..+||+++++++ ++++++|++|+|+++++.
T Consensus 32 ~~~i~l~~g~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~y~~~~~~~~l~~~la~~~----g~~~~~v~~~~g~~~al~ 105 (397)
T 2zyj_A 32 PGILSFAGGLPAPELFPKEEAAEAAARILREKG--EVALQYSPTEGYAPLRAFVAEWI----GVRPEEVLITTGSQQALD 105 (397)
T ss_dssp TTCEEESSCCCCGGGCCHHHHHHHHHHHHHHHH--HHHTSCCCTTCCHHHHHHHHHHH----TSCGGGEEEESHHHHHHH
T ss_pred CCceecCCCCCCchhCCHHHHHHHHHHHHHhcc--hhhhCCCCCCCCHHHHHHHHHHh----CCChhhEEEeccHHHHHH
Confidence 4689999987653 367889999988886522 12457877789999999999998 678899999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--C-CCccEEE-EcCC
Q 045431 141 R-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--V-ARTDIIF-FCSP 214 (433)
Q Consensus 141 ~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~-~~~~~i~-l~~p 214 (433)
+ +..++++||+|++++|+|+++...++..| .+++.++.+.+ +++.+ +++ . .++++|+ +++|
T Consensus 106 ~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g------------~~~~~~~~~~~-~~d~~~l~~~l~~~~~~~v~~~~~~ 172 (397)
T 2zyj_A 106 LVGKVFLDEGSPVLLEAPSYMGAIQAFRLQG------------PRFLTVPAGEE-GPDLDALEEVLKRERPRFLYLIPSF 172 (397)
T ss_dssp HHHHHHCCTTCEEEEEESCCHHHHHHHHTTC------------CEEEEEEEETT-EECHHHHHHHHHHCCCSCEEECCBS
T ss_pred HHHHHhCCCCCEEEEeCCCcHHHHHHHHHcC------------CEEEecCcCCC-CCCHHHHHHHHhhcCCeEEEECCCC
Confidence 7 57778999999999999999999888888 47777777543 22221 221 1 3678875 5799
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCC---cceEEEecccccccccccceeeee
Q 045431 215 NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAK---EVAIETSSFSKYAGFTGVRLGWTV 290 (433)
Q Consensus 215 ~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~---~~vi~i~S~sK~~~~~G~r~G~l~ 290 (433)
|||||.+++.+++++|+++|++||++||+||+|+++.+.+. +.++..++. . +++++++|+||++| +|+|+||++
T Consensus 173 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~-~~~~~~~i~~~s~sK~~~-~G~r~G~~~ 250 (397)
T 2zyj_A 173 QNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAR-EAGYPGVIYLGSFSKVLS-PGLRVAFAV 250 (397)
T ss_dssp CTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHH-HHTCCCEEEEEESTTTTC-GGGCCEEEE
T ss_pred cCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCc-ccCCCeEEEEeccccccc-ccceeEEEe
Confidence 99999999999999999999999999999999999887654 455555532 2 57899999999999 999999999
Q ss_pred ccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc---CCeeecCC
Q 045431 291 IPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL---GFKVYGGK 367 (433)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---g~~~~~~~ 367 (433)
++++++ +.+.........+++.++|.++.++++....+++++++++++++++.+.+.|+++ |+.+..+.
T Consensus 251 ~~~~~~--------~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~ 322 (397)
T 2zyj_A 251 AHPEAL--------QKLVQAKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPKEVRYTRPK 322 (397)
T ss_dssp CCHHHH--------HHHHHHHHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCS
T ss_pred cCHHHH--------HHHHHHHHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccCC
Confidence 998774 6666555554555789999999999985422678899999999999999999885 78887777
Q ss_pred CccEEEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCC--CCCeEEEeecc-ChhHHHHHHHHHHHhh
Q 045431 368 NAPYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPG--GEGFIRVSAFG-HRGNVLEACKRFKHLY 432 (433)
Q Consensus 368 ~g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~--~~~~iRi~~~~-~~~~l~~~l~~l~~~l 432 (433)
+|+|+|++++ +.+..++...+.++ ||.+.||..|+.. +++++||++.. +++++++++++|++++
T Consensus 323 ~g~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~f~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l 390 (397)
T 2zyj_A 323 GGMFVWMELPKGLSAEGLFRRALEE-NVAFVPGGPFFANGGGENTLRLSYATLDREGIAEGVRRLGRAL 390 (397)
T ss_dssp BSSEEEEECSTTCCHHHHHHHHHHT-TEEEEESGGGCTTSCCTTEEEEECSSSCHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEcCCCCCHHHHHHHHHHC-CCEEechHHhcCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 8999999998 45667777777766 9999999988643 46899999865 7999999999998875
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-44 Score=348.76 Aligned_cols=347 Identities=20% Similarity=0.289 Sum_probs=269.7
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhc------ccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCC--CCCCcEEEc
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYAL------STQEGYSGYGAEQGEKPLRAAIASTFYK--DLG--IEEGDIFVS 132 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~--~~~~~i~~~ 132 (433)
..+|+|+.+.+++++ +.+.+++.+..... ........|+++.|..+||+++++++.+ ++. +++++|++|
T Consensus 36 ~~~i~l~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~ 114 (428)
T 1iay_A 36 NGVIQMGLAENQLCL-DLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMA 114 (428)
T ss_dssp TSBEECSSCCCCSSH-HHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEE
T ss_pred CceeeeccccchhhH-HHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEEEc
Confidence 368999998876654 47777776432100 0001235787778999999999999975 333 678999999
Q ss_pred CChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHH-HhCCcccccccccccceEEEeecCccCCcccCCCC--------
Q 045431 133 DGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSV-IMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-------- 202 (433)
Q Consensus 133 ~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 202 (433)
+|+++++.+ +..++++||+|++++|+|+++...+. ..| .+++.++.+.++++..+++.
T Consensus 115 ~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 182 (428)
T 1iay_A 115 GGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTG------------VQLIPIHCESSNNFKITSKAVKEAYENA 182 (428)
T ss_dssp EHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTC------------CEEEEECCCTTTTTCCCHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHhCCCCCeEEEccCCCcchHHHHHHhcC------------CEEEEeecCCccCCcCCHHHHHHHHHHH
Confidence 999999987 67788999999999999999876443 456 47778887654344333221
Q ss_pred ---CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCC-------CcceEE
Q 045431 203 ---VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGA-------KEVAIE 271 (433)
Q Consensus 203 ---~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~-------~~~vi~ 271 (433)
..++++|++++||||||.+++.+++++|+++|++||++||+||+|.++.+.+. ..++..+... .|++++
T Consensus 183 ~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv 262 (428)
T 1iay_A 183 QKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHI 262 (428)
T ss_dssp HHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEE
T ss_pred HhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEE
Confidence 13688999999999999999999999999999999999999999999777643 3345444322 478899
Q ss_pred Eecccccccccccceeeeecc-ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh--hHHHHHHHHHHHH
Q 045431 272 TSSFSKYAGFTGVRLGWTVIP-KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF--KAVHEVIGFYKEN 348 (433)
Q Consensus 272 i~S~sK~~~~~G~r~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~ 348 (433)
+.||||++|++|+|+||++++ ++++ +.+.+.. ...+.+.++|.++.+++++..+ +++++.+++++++
T Consensus 263 ~~s~sK~~g~~Glr~G~~~~~~~~~~--------~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 332 (428)
T 1iay_A 263 VYSLSKDMGLPGFRVGIIYSFNDDVV--------NCARKMS--SFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKR 332 (428)
T ss_dssp EEESTTTSSCGGGCEEEEEESCHHHH--------HHHHHHH--TTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred EecchhhcCCCCceEEEEEeCCHHHH--------HHHHHHH--hcccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999985 4453 5555432 2345789999999999986531 4678899999999
Q ss_pred HHHHHHHHhhcCCeeecCCCccEEEEECCCC-------ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec-cChhH
Q 045431 349 TDIIVETFNSLGFKVYGGKNAPYVWVQFPGR-------SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF-GHRGN 420 (433)
Q Consensus 349 ~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~-------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~-~~~~~ 420 (433)
++.+.+.|+++|+.+.++.+|+|+|++++.. ...++...+++++||.+.||..|+..+++++||++. .++++
T Consensus 333 ~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~~~~~e~ 412 (428)
T 1iay_A 333 HKHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGT 412 (428)
T ss_dssp HHHHHHHHHHTTCCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECSSSCHHH
T ss_pred HHHHHHHHHhcCCcccCCCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEecCCHHH
Confidence 9999999999888887777899999999742 234566777666799999999887655689999986 68999
Q ss_pred HHHHHHHHHHhh
Q 045431 421 VLEACKRFKHLY 432 (433)
Q Consensus 421 l~~~l~~l~~~l 432 (433)
+++++++|++++
T Consensus 413 i~~~~~~l~~~l 424 (428)
T 1iay_A 413 VDIALARIRRFV 424 (428)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999876
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=337.46 Aligned_cols=330 Identities=16% Similarity=0.226 Sum_probs=271.2
Q ss_pred CCCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHH
Q 045431 60 YPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDI 139 (433)
Q Consensus 60 ~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al 139 (433)
.+++.+|+|+.|++++++|+.+.+++.+.+.. ...| +..+..+||+++++++ ++++++|++|+|+++++
T Consensus 13 ~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~------~~~y-~~~~~~~l~~~la~~~----~~~~~~i~~~~g~~~a~ 81 (354)
T 3ly1_A 13 PSTDNPIRINFNENPLGMSPKAQAAARDAVVK------ANRY-AKNEILMLGNKLAAHH----QVEAPSILLTAGSSEGI 81 (354)
T ss_dssp CCSSSCEECSSCCCSSCCCHHHHHHHHHTGGG------TTSC-CHHHHHHHHHHHHHHT----TSCGGGEEEESHHHHHH
T ss_pred CCCCceEEccCCCCCCCCCHHHHHHHHHHHhh------CcCC-CCCchHHHHHHHHHHh----CCChHHEEEeCChHHHH
Confidence 34567999999999999999999999987753 3466 4568899999999997 78889999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--C--CCccEEEEcC
Q 045431 140 SR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--V--ARTDIIFFCS 213 (433)
Q Consensus 140 ~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~--~~~~~i~l~~ 213 (433)
.+ +..++++||+|++++|+|+++...++..| .+++.++.+.+..++.+ +++ . +++++|++++
T Consensus 82 ~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~v~l~~ 149 (354)
T 3ly1_A 82 RAAIEAYASLEAQLVIPELTYGDGEHFAKIAG------------MKVTKVKMLDNWAFDIEGLKAAVAAYSGPSIVYLVN 149 (354)
T ss_dssp HHHHHHHCCTTCEEEEESSSCTHHHHHHHHTT------------CEEEEECCCTTSCCCHHHHHHHHHTCSSCEEEEEES
T ss_pred HHHHHHHhCCCCeEEECCCCchHHHHHHHHcC------------CEEEEecCCCCCCCCHHHHHHHhccCCCCCEEEEeC
Confidence 97 57778999999999999999999999888 47888888754333322 221 1 6899999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccc-cCCCCcceEEEecccccccccccceeeeecc
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFE-IPGAKEVAIETSSFSKYAGFTGVRLGWTVIP 292 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~-~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~ 292 (433)
||||||.+++.+++++|+++| +||+++|+||+|+++.+++.+.+... .+...+++++++||||.+|++|+|+||++++
T Consensus 150 p~nptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~ 228 (354)
T 3ly1_A 150 PNNPTGTITPADVIEPWIASK-PANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAH 228 (354)
T ss_dssp SCTTTCCCCCHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEECC
T ss_pred CCCCcCCCcCHHHHHHHHHhC-CCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeecC
Confidence 999999999999999999999 89999999999998887765434433 2332267899999999999999999999998
Q ss_pred ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEE
Q 045431 293 KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYV 372 (433)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~ 372 (433)
++++ +.+...... .+.+.+.|.++.+++++. .++++.+++++++++.+.+.|+++|+.+.+ ..|+|+
T Consensus 229 ~~~~--------~~~~~~~~~--~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~ 295 (354)
T 3ly1_A 229 PTVI--------ALMGRYVAG--EKINFSGVDAALASMNDS--AFITYSKKSNDVSRQILLKALEDLKLPYLP-SEGNFV 295 (354)
T ss_dssp HHHH--------HHHGGGTTC--SCCCHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHHHHHHHHTCCBCC-CCSSEE
T ss_pred HHHH--------HHHHHhcCC--CCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHCCCeECC-CCceEE
Confidence 8774 555544332 568999999999999843 678999999999999999999998888775 478889
Q ss_pred EEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 373 WVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 373 ~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
|++++. +..++...+.+ +||.+. |..++ .++++||++. +++++++++++|++++
T Consensus 296 ~~~~~~-~~~~~~~~l~~-~gi~v~-g~~~~--~~~~iRis~~-~~~~i~~~~~~l~~~l 349 (354)
T 3ly1_A 296 FHQLVV-PLKDYQTHMAD-AGVLIG-RAFPP--ADNWCRISLG-TPQEMQWVADTMREFR 349 (354)
T ss_dssp EEECSS-CHHHHHHHHHH-TTEECC-CCCTT--CTTEEEEECC-CHHHHHHHHHHHHHHH
T ss_pred EEECCC-CHHHHHHHHHH-CCEEEe-ecCCC--CCCEEEEEcC-CHHHHHHHHHHHHHHH
Confidence 999986 56667777665 599998 76543 5689999975 7899999999999876
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-43 Score=336.12 Aligned_cols=328 Identities=17% Similarity=0.281 Sum_probs=268.4
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR 141 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~ 141 (433)
.+++|+|+.|++++++|+.+.+++.+.+. ....| +..+..++|+++++++ ++++++|++|+|+++++.+
T Consensus 31 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~------~~~~y-~~~~~~~lr~~la~~~----~~~~~~v~~~~g~t~a~~~ 99 (363)
T 3ffh_A 31 LTKITKLSSNENPLGTSKKVAAIQANSSV------ETEIY-PDGWASSLRKEVADFY----QLEEEELIFTAGVDELIEL 99 (363)
T ss_dssp CSCCEECSSCSCTTCCCHHHHHHHHTCBS------CCCBC-----CHHHHHHHHHHH----TCCGGGEEEESSHHHHHHH
T ss_pred CCceEEccCCCCCCCCCHHHHHHHHHHHH------HhhcC-CCcchHHHHHHHHHHh----CCChhhEEEeCCHHHHHHH
Confidence 35799999999999999999999888553 23456 5578999999999998 7888999999999999997
Q ss_pred -HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEEEEcCCCCc
Q 045431 142 -LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIFFCSPNNP 217 (433)
Q Consensus 142 -l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~~p~nP 217 (433)
+..++++||+|++++|+|+++...++..| .+++.++.+++..++.+ +++ .+++++|++++||||
T Consensus 100 ~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~np 167 (363)
T 3ffh_A 100 LTRVLLDTTTNTVMATPTFVQYRQNALIEG------------AEVREIPLLQDGEHDLEGMLNAIDEKTTIVWICNPNNP 167 (363)
T ss_dssp HHHHHCSTTCEEEEEESSCHHHHHHHHHHT------------CEEEEEECCTTSCCCHHHHHHHCCTTEEEEEEESSCTT
T ss_pred HHHHHccCCCEEEEcCCChHHHHHHHHHcC------------CEEEEecCCCCCCcCHHHHHHhcccCCCEEEEeCCCCC
Confidence 57778999999999999999999999998 47888888754333222 111 357999999999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccc
Q 045431 218 TGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLF 297 (433)
Q Consensus 218 tG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~ 297 (433)
||.+++.+++.+|++.|++ |+++|+||+|+++.+ +...+........+++++++||||.+|++|+|+||++++++++
T Consensus 168 tG~~~~~~~l~~l~~~~~~-~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~- 244 (363)
T 3ffh_A 168 TGNYIELADIQAFLDRVPS-DVLVVLDEAYIEYVT-PQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIADKEII- 244 (363)
T ss_dssp TCCCCCHHHHHHHHTTSCT-TSEEEEECTTGGGCS-SCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEECHHHH-
T ss_pred cCCCcCHHHHHHHHHhCCC-CcEEEEeCchHhhcC-ccccCHHHHhhcCCCEEEEeechhhhcCchhceeeeecCHHHH-
Confidence 9999999999999998877 999999999998877 4443444433346789999999999999999999999988874
Q ss_pred cCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhh-cCCeeecCCCccEEEEEC
Q 045431 298 SDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNS-LGFKVYGGKNAPYVWVQF 376 (433)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~g~~~~~~~ 376 (433)
+.+..... ..+.+.+.|.++.+++++. +++++.+++++++++.+.+.|++ .|+.+.+ ..++|+|+++
T Consensus 245 -------~~l~~~~~--~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~-~~~~~~~~~~ 312 (363)
T 3ffh_A 245 -------RQLNIVRP--PFNTTSIGQKLAIEAIKDQ--AFIGECRTSNANGIKQYEAFAKRFEKVKLYP-ANGNFVLIDL 312 (363)
T ss_dssp -------HHHHHTCC--SCCCBHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHHHHHHHHCTTCEECC-CCSSEEEEEC
T ss_pred -------HHHHHhCC--CCCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHhhCCCceECC-CCCeEEEEEC
Confidence 55554433 4568999999999998743 67899999999999999999999 5888875 4678899999
Q ss_pred CCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 377 PGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 377 ~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+. +..++...+.+ +||.+.||..|+. ++++||++. +++++++++++|++++
T Consensus 313 ~~-~~~~~~~~l~~-~gi~v~~g~~~~~--~~~iRis~~-~~~~i~~~~~~l~~~l 363 (363)
T 3ffh_A 313 GI-EAGTIFSYLEK-NGYITRSGAALGF--PTAVRITIG-KEEDNSAVIALLEKLL 363 (363)
T ss_dssp SS-CHHHHHHHHHH-TTEECEETTTTTC--TTEEEEECC-CHHHHHHHHHHHHHHC
T ss_pred CC-CHHHHHHHHHH-CCeEEEeCccCCC--CCeEEEECC-CHHHHHHHHHHHHHhC
Confidence 86 66677777665 5999999998865 679999986 8999999999999864
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=347.75 Aligned_cols=347 Identities=20% Similarity=0.294 Sum_probs=275.2
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccC-------CCCCCCCCCCCCHHHHHHHHHHHhc----cCCCCCCcEEEc
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQ-------EGYSGYGAEQGEKPLRAAIASTFYK----DLGIEEGDIFVS 132 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~Y~~~~g~~~lr~~la~~l~~----~~~~~~~~i~~~ 132 (433)
.+|+|+.+.+.+. .+.+.+++.+........ ....+|++..|.++||+++++++.+ ++.+++++|++|
T Consensus 39 ~~i~lg~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~ 117 (435)
T 3piu_A 39 GIIQMGLAENQLC-FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLT 117 (435)
T ss_dssp SBEECSSCCCCSS-HHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEE
T ss_pred CeEEecccccccc-HHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHHHEEEc
Confidence 5899999887654 566666666543321100 0124698899999999999999973 244678999999
Q ss_pred CChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHH-HhCCcccccccccccceEEEeecCccCCcccCCCC--------
Q 045431 133 DGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSV-IMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-------- 202 (433)
Q Consensus 133 ~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 202 (433)
+|+++++.+ +..++++||.|++++|+|+++...+. ..| .+++.++.+.++++..+++.
T Consensus 118 ~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 185 (435)
T 3piu_A 118 AGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTG------------VEIVPIHCTSSNGFQITETALEEAYQEA 185 (435)
T ss_dssp EHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTC------------CEEEEEECCGGGTSCCCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHhcCCCCeEEECCCccccHHHHHHHhcC------------CEEEEeeCCCccCCcCCHHHHHHHHHHH
Confidence 999999997 57788999999999999999887766 566 47888888766555444332
Q ss_pred ---CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCC---------Ccce
Q 045431 203 ---VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGA---------KEVA 269 (433)
Q Consensus 203 ---~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~---------~~~v 269 (433)
..++++|++++||||||.+++.+++++|+++|++||+++|+||+|+.+.+.+. +.++..+... ++++
T Consensus 186 ~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 265 (435)
T 3piu_A 186 EKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRV 265 (435)
T ss_dssp HHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGE
T ss_pred HhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCE
Confidence 13788999999999999999999999999999999999999999998777654 3344433221 5788
Q ss_pred EEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh--hHHHHHHHHHHH
Q 045431 270 IETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF--KAVHEVIGFYKE 347 (433)
Q Consensus 270 i~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~--~~~~~~~~~~~~ 347 (433)
++++||||.+|++|+|+||++++++.+ .+.+... ......+.+.|.++.+++.+..+ +++++.++++++
T Consensus 266 i~i~s~sK~~g~~G~r~G~~~~~~~~~-------~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 336 (435)
T 3piu_A 266 HVVYSLSKDLGLPGFRVGAIYSNDDMV-------VAAATKM--SSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQ 336 (435)
T ss_dssp EEEEESSSSSCCGGGCEEEEEESCHHH-------HHHHHHH--GGGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeecccCCCceeEEEEEeCCHHH-------HHHHHHH--hhcCCCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 999999999999999999999965543 2444433 23345788999988888875443 367888999999
Q ss_pred HHHHHHHHHhhcCCeeecCCCccEEEEECCCC-------ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc-Chh
Q 045431 348 NTDIIVETFNSLGFKVYGGKNAPYVWVQFPGR-------SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG-HRG 419 (433)
Q Consensus 348 ~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~-------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~ 419 (433)
+++.+.+.|++.|+.+..+.+|+++|++++.. ...++...+++++||.+.||..|+..+++++||++.. +++
T Consensus 337 ~~~~l~~~L~~~g~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~e 416 (435)
T 3piu_A 337 RQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPER 416 (435)
T ss_dssp HHHHHHHHHHTTTCEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSSCHH
T ss_pred HHHHHHHHHHhcCCcccCCCeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCCCCCCEEEEEeeCCCHH
Confidence 99999999999999988888889999999742 2456777777777999999999987778999999866 899
Q ss_pred HHHHHHHHHHHhh
Q 045431 420 NVLEACKRFKHLY 432 (433)
Q Consensus 420 ~l~~~l~~l~~~l 432 (433)
++++++++|++++
T Consensus 417 ~i~~~l~~l~~~l 429 (435)
T 3piu_A 417 TLDLAMQRLKAFV 429 (435)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999876
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-43 Score=342.01 Aligned_cols=352 Identities=18% Similarity=0.248 Sum_probs=259.0
Q ss_pred CCceEEecCCCCCCCCh--HHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHH
Q 045431 62 DAEVISLGIGDTTEPIP--EVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~ 137 (433)
++++|+|+.|.|+..++ +.+.+++.+.+....+......|++..|.++||+++|+|+.+ ++++++++|++|+|+++
T Consensus 30 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~ 109 (417)
T 3g7q_A 30 TPGAIMLGGGNPAHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTNGSQS 109 (417)
T ss_dssp --CCEECSCCCCCCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHH
T ss_pred CCCceEecCcCCCCCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHH
Confidence 35789999999875332 455666666654321001234798899999999999999975 77788999999999999
Q ss_pred HHHH-HHHhcCCCC-----EEEEe-CCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC---CCCCCCcc
Q 045431 138 DISR-LQIVFGSNV-----TMAVQ-DPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD---LSTVARTD 207 (433)
Q Consensus 138 al~~-l~~l~~~gd-----~Vl~~-~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 207 (433)
++++ +..++++|| +|+++ +|+|+++...+...+.... .+ ..+..++.+. .++..+ ++..++++
T Consensus 110 al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~-~~~~~d~~~l~~~~~~~ 182 (417)
T 3g7q_A 110 AFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVS---AR---PNIELLPEGQ-FKYHVDFEHLHIGEETG 182 (417)
T ss_dssp HHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEE---CC---CEEEEEGGGE-EEEECCGGGCCCCTTEE
T ss_pred HHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhcc---cc---CcccccCCcc-cccccCHHHhccccCce
Confidence 9997 577788987 89996 9999998876543332100 00 1333333321 011112 22235789
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccccccee
Q 045431 208 IIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLG 287 (433)
Q Consensus 208 ~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G 287 (433)
++++++||||||.+++.+++++|+++|++||++||+||+|+.+.......... ....+++++++|||| ++++|+|+|
T Consensus 183 ~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~~--~~~~~~~i~~~s~sK-~~~~G~r~G 259 (417)
T 3g7q_A 183 MICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEAR--PLWNPNIILCMSLSK-LGLPGSRCG 259 (417)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCC--CCCCTTEEEEEESGG-GTCTTSCCE
T ss_pred EEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccccccccc--cCCCCCEEEEEechh-ccCCCcceE
Confidence 99999999999999999999999999999999999999998632211111111 123568999999999 568999999
Q ss_pred eeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-hHHHH-HHHHHHHHHHHHHHHHhhc----CC
Q 045431 288 WTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-KAVHE-VIGFYKENTDIIVETFNSL----GF 361 (433)
Q Consensus 288 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~-~~~~~~~~~~~l~~~l~~~----g~ 361 (433)
|++++++++ +.+.........+++.+.|.++.+++++..+ +++.+ +++.++++++.+.+.|++. ++
T Consensus 260 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 331 (417)
T 3g7q_A 260 IIIANDKTI--------TAIANMNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERC 331 (417)
T ss_dssp EEECCHHHH--------HHHHHHHHHHCCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTC
T ss_pred EEEeCHHHH--------HHHHHhhcceeeCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCc
Confidence 999998885 6677766666667889999999999886655 34444 7788999999998888763 57
Q ss_pred eeecCCCccEEEEECCC--CChHHHHHHHHHcCCeEecCCCCCCCCC-------CCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 362 KVYGGKNAPYVWVQFPG--RSSWDVFSEILEKTHVVTTPGSGFGPGG-------EGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 362 ~~~~~~~g~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~f~~~~-------~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
.+..+.+|+++|++++. .+..++...+ .++||.+.||..|+... ++++||++..+++++++++++|++++
T Consensus 332 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~l-~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~~~~~i~~~~~~l~~~l 410 (417)
T 3g7q_A 332 LIHKPEGAIFLWLWFKDLPITTELLYQRL-KARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVPEPDKIEAGVKILAEEI 410 (417)
T ss_dssp EEECCCBSSEEEEECTTCSSCHHHHHHHH-HHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCSCHHHHHHHHHHHHHHH
T ss_pred eeeCCCcceEEEEEcCCCCCCHHHHHHHH-HHCCEEEECchhhCCCCccccccCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 88888899999999984 4666777766 55699999999886543 57999998779999999999999876
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-44 Score=352.29 Aligned_cols=340 Identities=15% Similarity=0.126 Sum_probs=268.6
Q ss_pred ceEEecCCCCCCCC---hHHHHHHH--HHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHH
Q 045431 64 EVISLGIGDTTEPI---PEVITSAL--AKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCD 138 (433)
Q Consensus 64 ~~i~l~~g~~~~~~---~~~~~~a~--~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~a 138 (433)
..|+|+.|.|+... ++.+.+++ .+++.... ....+|++..|.++||+++|+++ ++++++|++|+|++++
T Consensus 34 ~~i~~~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~Y~~~~g~~~lr~~ia~~~----~~~~~~i~~t~G~~~a 107 (427)
T 3ppl_A 34 LKLDLTRGKPSSEQLDFADELLALPGKGDFKAADG--TDVRNYGGLDGIVDIRQIWADLL----GVPVEQVLAGDASSLN 107 (427)
T ss_dssp CCEECCCCSCCHHHHHTTGGGGGCSCTTCCBCTTS--CBTTSSCCSSCCHHHHHHHHHHH----TSCGGGEEECSSCHHH
T ss_pred ceEecCCCCCChHHCCCcHHHHHHhhhHHHhhccc--hhhcCCCCCCCcHHHHHHHHHHh----CCCcceEEEeCCcHHH
Confidence 57999999987432 22455554 44433211 34568988899999999999998 7899999999999999
Q ss_pred H--HH-HHHhcC--C----------CCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC
Q 045431 139 I--SR-LQIVFG--S----------NVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST 202 (433)
Q Consensus 139 l--~~-l~~l~~--~----------gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 202 (433)
+ ++ +..++. | ||+|++++|+|+.+...++..| .+++.++.+.+ +++.+ +++
T Consensus 108 l~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g------------~~~~~v~~~~~-g~d~~~l~~ 174 (427)
T 3ppl_A 108 IMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFG------------FEMISVPMNED-GPDMDAVEE 174 (427)
T ss_dssp HHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTT------------CEEEEEEEETT-EECHHHHHH
T ss_pred HHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcC------------CEEEEeCCCCC-CCCHHHHHH
Confidence 9 45 466666 6 9999999999999999999999 47888888654 33322 221
Q ss_pred ---CCCccEEEEc-CCCCccccCCCHHHHHHHHHHH-HHcCCEEEEeccccccccCCCC---Cccccc---CCCCcceEE
Q 045431 203 ---VARTDIIFFC-SPNNPTGAAATREQLTRLVQFA-KDNGSIIVYDSAYALYISDDNP---RSIFEI---PGAKEVAIE 271 (433)
Q Consensus 203 ---~~~~~~i~l~-~p~nPtG~~~~~~~~~~i~~~a-~~~~~~li~De~~~~~~~~~~~---~~~~~~---~~~~~~vi~ 271 (433)
.+++++|+++ +||||||.+++.+++++|+++| ++||++||+||+|+++.+.+.+ .++..+ .+..+++++
T Consensus 175 ~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 254 (427)
T 3ppl_A 175 LVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWA 254 (427)
T ss_dssp HTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEE
T ss_pred HHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEE
Confidence 3578888876 8899999999999999999999 9999999999999997776532 244443 124578999
Q ss_pred EecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCc-CCh-hHHHHHHHHHHHHH
Q 045431 272 TSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSP-EGF-KAVHEVIGFYKENT 349 (433)
Q Consensus 272 i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~-~~~~~~~~~~~~~~ 349 (433)
++||||+. ++|+|+||++++++++ +.+.........+++.+.|.++.+++.+ ... +++++.++.+++++
T Consensus 255 ~~S~SK~~-~~G~r~G~~~~~~~l~--------~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 325 (427)
T 3ppl_A 255 FTSTSKIT-LAGAGVSFFLTSAENR--------KWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKF 325 (427)
T ss_dssp EEESTTTS-CTTSSCEEEECCHHHH--------HHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHH
T ss_pred Eechhhcc-CcCccEEEEEcCHHHH--------HHHHHHhhcccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHH
Confidence 99999995 6999999999998885 6677766666777899999999999986 222 67889999999999
Q ss_pred HHHHHHHhhc-----CCeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecC-CCCCCC---CCCCeEEEeecc-Chh
Q 045431 350 DIIVETFNSL-----GFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTP-GSGFGP---GGEGFIRVSAFG-HRG 419 (433)
Q Consensus 350 ~~l~~~l~~~-----g~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~-g~~f~~---~~~~~iRi~~~~-~~~ 419 (433)
+.+.+.|.+. ++.+..|.+|+|+|++++..+..++... +.++||.+.| |..|+. ..++++||++.. +++
T Consensus 326 ~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~-l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~~~~ 404 (427)
T 3ppl_A 326 NKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPGTASRVAEL-AKEAGIALTGAGSSYPLRQDPENKNLRLAPSLPPVE 404 (427)
T ss_dssp HHHHHHHHHHHGGGTCCEECCCSBSSCEEEECSTTCHHHHHHH-HHHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCHH
T ss_pred HHHHHHHHHhcCCCCceEEeCCCccEEEEEECCcchHHHHHHH-HHHCCCEEecCcCcCCCCCCCCCCeEEEECCCCCHH
Confidence 9998888652 4777778899999999986556666555 4566999999 555542 357899999866 789
Q ss_pred HHHHHHHHHHHhh
Q 045431 420 NVLEACKRFKHLY 432 (433)
Q Consensus 420 ~l~~~l~~l~~~l 432 (433)
++++++++|++++
T Consensus 405 ~i~~~~~~l~~~l 417 (427)
T 3ppl_A 405 ELEVAMDGVATCV 417 (427)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999875
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-43 Score=341.21 Aligned_cols=345 Identities=22% Similarity=0.303 Sum_probs=277.1
Q ss_pred CCceEEecCCCCCCC--ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHH
Q 045431 62 DAEVISLGIGDTTEP--IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~ 137 (433)
+.++|+|+.|.++.. +++.+.+++.+.+.+.. .... |++..|..++|+++++++.+ ++.+++++|++|+|+++
T Consensus 33 g~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~--~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~ 109 (407)
T 2zc0_A 33 GVKLISLAAGDPDPELIPRAVLGEIAKEVLEKEP--KSVM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTG 109 (407)
T ss_dssp SCCCEECCSCCCCTTTSCHHHHHHHHHHHHHHCG--GGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHH
T ss_pred CCceEeCCCCCCCchhCCHHHHHHHHHHHHhhcc--cccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHH
Confidence 446899999987543 67889999999887532 2345 88888999999999999976 54578899999999999
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--C------CCcc
Q 045431 138 DISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--V------ARTD 207 (433)
Q Consensus 138 al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~------~~~~ 207 (433)
++.+ +..++++||+|++++|+|+++...++..| .+++.++.+.+ +++.+ +++ . .+++
T Consensus 110 a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~~-~~d~~~l~~~l~~~~~~~~~~~ 176 (407)
T 2zc0_A 110 ALDLLGRVLIDPGDVVITENPSYINTLLAFEQLG------------AKIEGVPVDND-GMRVDLLEEKIKELKAKGQKVK 176 (407)
T ss_dssp HHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTT------------CEEEEEEEETT-EECHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHcC------------CEEEEcccCCC-CCCHHHHHHHHHhhhcccCCce
Confidence 9997 57778999999999999999998888888 47777777543 22221 221 1 2678
Q ss_pred EEE-EcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccc
Q 045431 208 IIF-FCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVR 285 (433)
Q Consensus 208 ~i~-l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r 285 (433)
+|+ +++||||||.+++.+++++|+++|++||++||+||+|+++.+.+. +.++..++. .+++++++||||+++ +|+|
T Consensus 177 ~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~-~G~r 254 (407)
T 2zc0_A 177 LIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDN-EGRVIVAGTLSKVLG-TGFR 254 (407)
T ss_dssp EEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCS-SCCEEEEEESTTTTC-TTSC
T ss_pred EEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCC-CCCEEEEcccccccC-CCcc
Confidence 875 569999999999999999999999999999999999999877654 345656643 457899999999998 9999
Q ss_pred eeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCC-h-hHHHHHHHHHHHHHHHHHHHHhhc--CC
Q 045431 286 LGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEG-F-KAVHEVIGFYKENTDIIVETFNSL--GF 361 (433)
Q Consensus 286 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~-~-~~~~~~~~~~~~~~~~l~~~l~~~--g~ 361 (433)
+||++++++++ +.+.........+++.+.|.++.++++... . .++++.+++++++++.+.+.|++. ++
T Consensus 255 ~G~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 326 (407)
T 2zc0_A 255 IGWIIAEGEIL--------KKVLMQKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNA 326 (407)
T ss_dssp CEEEECCHHHH--------HHHHHHHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred eEEEecCHHHH--------HHHHHHHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999998774 666665555555678999999888887531 2 456788899999999999999874 67
Q ss_pred eeecCCCccEEEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCC--CCCeEEEeecc-ChhHHHHHHHHHHHhh
Q 045431 362 KVYGGKNAPYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPG--GEGFIRVSAFG-HRGNVLEACKRFKHLY 432 (433)
Q Consensus 362 ~~~~~~~g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~--~~~~iRi~~~~-~~~~l~~~l~~l~~~l 432 (433)
.+..+.+|+|+|++++ +.+..++...+.+++||.+.||..|... +.+++||++.. +++++++++++|++++
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l 401 (407)
T 2zc0_A 327 EFTKPIAGMFVMFFLPEGADGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRPSKEEIPIGIKKLAKLY 401 (407)
T ss_dssp CBCCCSBSSEEEEECSTTCCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSSCTTHHHHHHHHHHHHH
T ss_pred EEecCCCcEEEEEEcCCCCCHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 7777778899999997 4566778878777669999999988653 46899999865 7999999999998875
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-42 Score=330.75 Aligned_cols=328 Identities=15% Similarity=0.226 Sum_probs=264.3
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR 141 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~ 141 (433)
++++|+|+.|.+++++|+.+.+++.+.+.. ...|++ .|..++|+++++++ ++++++|++|+|+++++.+
T Consensus 23 ~~~~idl~~~~~~~~~~~~v~~a~~~~~~~------~~~y~~-~~~~~l~~~la~~~----~~~~~~v~~~~g~~~al~~ 91 (364)
T 1lc5_A 23 PDQLLDFSANINPLGMPVSVKRALIDNLDC------IERYPD-ADYFHLHQALARHH----QVPASWILAGNGETESIFT 91 (364)
T ss_dssp GGGSEECSSCCCTTCCCHHHHHHHHHTGGG------GGSCCC-TTCHHHHHHHHHHH----TSCGGGEEEESSHHHHHHH
T ss_pred ccceEEeccccCCCCCCHHHHHHHHHHHHH------hhcCCC-CCHHHHHHHHHHHH----CcCHHHEEECCCHHHHHHH
Confidence 446899999998888889999999887753 346744 58999999999998 7888999999999999998
Q ss_pred HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEEcCCCC
Q 045431 142 LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFFCSPNN 216 (433)
Q Consensus 142 l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~~p~n 216 (433)
+...+ +||+|++++|+|+++...++..| .+++.++.+.++++.. ++. .++++++++++|||
T Consensus 92 ~~~~~-~gd~vl~~~p~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~~v~i~~p~n 157 (364)
T 1lc5_A 92 VASGL-KPRRAMIVTPGFAEYGRALAQSG------------CEIRRWSLREADGWQL-TDAILEALTPDLDCLFLCTPNN 157 (364)
T ss_dssp HHHHH-CCSEEEEEESCCTHHHHHHHHTT------------CEEEEEECCGGGTTCC-CTTHHHHCCTTCCEEEEESSCT
T ss_pred HHHHc-CCCeEEEeCCCcHHHHHHHHHcC------------CeEEEEeCCcccccch-hHHHHHhccCCCCEEEEeCCCC
Confidence 54444 78999999999999999998888 4778888865334443 221 25788999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeee-ccccc
Q 045431 217 PTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTV-IPKEL 295 (433)
Q Consensus 217 PtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~-~~~~~ 295 (433)
|||.++|.+++++|+++|++||+++|+||+|+++.+++ .+.....+..+++++++|+||.+|++|+|+||++ +++++
T Consensus 158 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~--~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~ 235 (364)
T 1lc5_A 158 PTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHE--TGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAA 235 (364)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTC--CCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHH
T ss_pred CCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCc--cchhhHhccCCCEEEEEECchhhcCCccceEEEEECCHHH
Confidence 99999999999999999999999999999999887652 2222221224678999999999998999999999 88877
Q ss_pred cccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCCccEEEE
Q 045431 296 LFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAPYVWV 374 (433)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~~ 374 (433)
+ +.+.... ...+.+.++|.++.++++. ..++++.+++++++++.+.+.|+++ |+.+.+ ..|+|+|+
T Consensus 236 ~--------~~l~~~~--~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~g~~~~~ 302 (364)
T 1lc5_A 236 M--------ARMRRQQ--MPWSVNALAALAGEVALQD--SAWQQATWHWLREEGARFYQALCQLPLLTVYP-GRANYLLL 302 (364)
T ss_dssp H--------HHHHHHS--CTTCSCHHHHHHHHHGGGC--HHHHHHHHHHHHHHHHHHHHHHHTSTTEEECC-CSSSEEEE
T ss_pred H--------HHHHHhC--CCCCCCHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHhcCCCCEECC-CCCeEEEE
Confidence 4 5555433 2456889999999999985 3578999999999999999999988 888765 57788999
Q ss_pred ECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 375 QFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 375 ~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+++. ...++...+.+ +||.+.||..|+..+++++||++. +.++++++++.|++++
T Consensus 303 ~~~~-~~~~l~~~l~~-~gi~v~~g~~~~~~~~~~iRis~~-~~~~~~~l~~~l~~~~ 357 (364)
T 1lc5_A 303 RCER-EDIDLQRRLLT-QRILIRSCANYPGLDSRYYRVAIR-SAAQNERLLAALRNVL 357 (364)
T ss_dssp EESC-TTCCHHHHHHT-TTEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHC
T ss_pred ECCC-cHHHHHHHHHH-CCcEEeeCcccCCCCCCEEEEEeC-CHHHHHHHHHHHHHHh
Confidence 9874 23456666664 599999999887555789999974 5778888888887765
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-42 Score=328.17 Aligned_cols=328 Identities=18% Similarity=0.283 Sum_probs=264.9
Q ss_pred CCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHH
Q 045431 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDIS 140 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~ 140 (433)
+++++|+|+.+++++++|+.+.+++.+.+.... .....|++ .+..+||+++++++ ++++++|++|+|+++++.
T Consensus 24 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~y~~-~~~~~lr~~la~~~----g~~~~~i~~t~g~~~al~ 96 (360)
T 3hdo_A 24 DIASWIKLNTNENPYPPSPEVVKAILEELGPDG--AALRIYPS-ASSQKLREVAGELY----GFDPSWIIMANGSDEVLN 96 (360)
T ss_dssp CCTTSEECSSCCCSSCCCHHHHHHHHHHHTTTC--GGGGSCCC-SSCHHHHHHHHHHH----TCCGGGEEEESSHHHHHH
T ss_pred cccceeeccCCCCCCCCCHHHHHHHHHHHhccc--chhhcCCC-CchHHHHHHHHHHh----CcCcceEEEcCCHHHHHH
Confidence 345799999999999999999999999886421 12456744 47799999999998 788999999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccc
Q 045431 141 R-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTG 219 (433)
Q Consensus 141 ~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG 219 (433)
+ +..++++||+|++++|+|.++...++..| .+++.++.+.+..+ .++.+..+++++++++||||||
T Consensus 97 ~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~~~~~-~~l~~~~~~~~v~i~~p~nptG 163 (360)
T 3hdo_A 97 NLIRAFAAEGEEIGYVHPSYSYYGTLAEVQG------------ARVRTFGLTGDFRI-AGFPERYEGKVFFLTTPNAPLG 163 (360)
T ss_dssp HHHHHHCCTTCEEEEESSSCTHHHHHHHHHT------------CEEEEECBCTTSSB-TTCCSSBCSSEEEEESSCTTTC
T ss_pred HHHHHHhCCCCEEEEcCCChHHHHHHHHHCC------------CEEEEeeCCCCCCH-HHHHhhcCCCEEEEeCCCCCCC
Confidence 7 57788999999999999999999999999 47888888655444 4444444678999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccC
Q 045431 220 AAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSD 299 (433)
Q Consensus 220 ~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~ 299 (433)
.+++.++ |.++|+++|+++|+||+|+++... ...++.. ..+++++++||||.+|++|+|+||++++++++
T Consensus 164 ~~~~~~~---l~~l~~~~~~~li~De~~~~~~~~-~~~~~~~---~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~--- 233 (360)
T 3hdo_A 164 PSFPLEY---IDELARRCAGMLVLDETYAEFAES-NALELVR---RHENVVVTRTLSKSYSLAGMRIGLAIARPEVI--- 233 (360)
T ss_dssp CCCCHHH---HHHHHHHBSSEEEEECTTGGGSSC-CCTHHHH---HCSSEEEEEESTTTTSCTTSCCEEEECCHHHH---
T ss_pred CCcCHHH---HHHHHHHCCCEEEEECChHhhCCc-chhHHhc---cCCCEEEEecchHhhcCCccceeeEeeCHHHH---
Confidence 9999655 555667899999999999986332 1222221 24678999999999999999999999988774
Q ss_pred CcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCCC
Q 045431 300 GFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGR 379 (433)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~ 379 (433)
+.+.... ...+.+.++|.++.+++++ ..++++.+++++++++.+.+.|+++|+.+.+ ..+.|+|+.+++.
T Consensus 234 -----~~~~~~~--~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~ 303 (360)
T 3hdo_A 234 -----AALDKIR--DHYNLDRLAQAACVAALRD--QAYLSECCRRIRETREWFTTELRSIGYDVIP-SQGNYLFATPPDR 303 (360)
T ss_dssp -----HHHHHHS--CSCCSCHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHTTCEECC-CSSSEEEEECTTC
T ss_pred -----HHHHHhC--CCCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCCCEEcC-CCccEEEEECCCC
Confidence 5555443 2356899999999999885 4578899999999999999999998888765 4788999999876
Q ss_pred ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 380 SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 380 ~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+..++...+. ++||.+.|+.. ...++++||++. +++++++++++|+++-
T Consensus 304 ~~~~l~~~l~-~~gi~v~~~~~--~~~~~~iRis~~-~~~e~~~l~~al~~~~ 352 (360)
T 3hdo_A 304 DGKRVYDGLY-ARKVLVRHFSD--PLLAHGMRISIG-TREEMEQTLAALKEIG 352 (360)
T ss_dssp CHHHHHHHHH-HTTEECBCCCS--TTTTTSEEEECC-CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HCCEEEEECCC--CCCCCEEEEEcC-CHHHHHHHHHHHHHHh
Confidence 7777777665 45999999775 334689999985 8999999999998864
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-43 Score=332.67 Aligned_cols=325 Identities=17% Similarity=0.279 Sum_probs=258.4
Q ss_pred CCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHH
Q 045431 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDIS 140 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~ 140 (433)
.++++|||+.+++++++|+.+.+++.+.+. ....|++..+ .+||+++|+++ ++++++|++|+|+++++.
T Consensus 13 ~g~~~id~~~~~~~~~~~~~v~~a~~~~~~------~~~~y~~~~~-~~lr~~la~~~----~~~~~~i~~t~g~~~al~ 81 (350)
T 3fkd_A 13 LSSEIVNFSTTVWTDGDKDHLEKHLVENLN------CIRHYPEPDA-GTLRQMLAKRN----SVDNNAILVTNGPTAAFY 81 (350)
T ss_dssp ---CCEECSCCSCCCSCCHHHHHHHHHTGG------GGGSCCCTTC-HHHHHHHHHHT----TCCGGGEEEESHHHHHHH
T ss_pred ccccEEEccCCCCCCCCCHHHHHHHHHhHh------HHhcCCCCcH-HHHHHHHHHHh----CcCHHHEEEcCCHHHHHH
Confidence 446799999999999999999999988773 2356766666 89999999997 788999999999999999
Q ss_pred HHHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeec-CccCCcccCCCCCCCccEEEEcCCCCccc
Q 045431 141 RLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRC-TAENGFFPDLSTVARTDIIFFCSPNNPTG 219 (433)
Q Consensus 141 ~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~l~~p~nPtG 219 (433)
++...+. ||+|++++|+|.++...++..| .+++.++. ++++++.. +++++|++++||||||
T Consensus 82 ~~~~~l~-gd~Vi~~~p~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~-----~~~~~v~i~~p~nptG 143 (350)
T 3fkd_A 82 QIAQAFR-GSRSLIAIPSFAEYEDACRMYE------------HEVCFYPSNEDIGEADF-----SNMDFCWLCNPNNPDG 143 (350)
T ss_dssp HHHHHTT-TCEEEEEESCCHHHHHHHHHTT------------CEEEEEETTSCGGGSCC-----TTCSEEEEESSCTTTC
T ss_pred HHHHHHC-CCEEEEeCCCcHHHHHHHHHcC------------CeEEEEecCCccccCcc-----CCCCEEEEeCCCCCcC
Confidence 8544444 9999999999999999999998 48888888 55444432 5789999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccC
Q 045431 220 AAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSD 299 (433)
Q Consensus 220 ~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~ 299 (433)
.+++.+++++|+++|+++ +||+||+|+++.+.+... ...++ ..+++++++||||.+|++|+|+||++++++++
T Consensus 144 ~~~~~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~~~-~~~~~-~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~--- 216 (350)
T 3fkd_A 144 RLLQRTEILRLLNDHPDT--TFVLDQSYVSFTTEEVIR-PADIK-GRKNLVMVYSFSHAYGIPGLRIGYIVANKDFM--- 216 (350)
T ss_dssp CCCCHHHHHHHHHHCTTS--EEEEECTTTTSCSSCCCC-GGGGT-TCSSEEEEEESHHHHSCGGGCCEEEECCHHHH---
T ss_pred CCCCHHHHHHHHHhCCCC--EEEEECchhhhccCcchh-hHHhh-cCCCEEEEecCchhccCcchheEeEEeCHHHH---
Confidence 999999999998888765 999999999887765432 23333 35678999999999999999999999988774
Q ss_pred CcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCCccEEEEECCC
Q 045431 300 GFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAPYVWVQFPG 378 (433)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~~~~~~ 378 (433)
+.+.... ...+.+.++|.++.+++++.. .+.++.++.. ++++.+.+.|+++ |+.+.+ ..++|+|+.++.
T Consensus 217 -----~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~-~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~ 286 (350)
T 3fkd_A 217 -----KRVAAFS--TPWAVNALAIEAAKFILIHPA-QFTLPIRKWQ-RNTVDFITALNRLDGVEVHP-SGTTFFLLRLKK 286 (350)
T ss_dssp -----HHHHTTC--CTTCSCHHHHHHHHHHHHCTT-TTCCCHHHHH-HHHHHHHHHHHHSTTEEECC-CSSSEEEEEESS
T ss_pred -----HHHHHhC--CCCCCCHHHHHHHHHHHhCHH-HHHHHHHHHH-HHHHHHHHHHhcCCCcEECC-CCCcEEEEECCC
Confidence 5555433 234678999999999887543 1223333444 8889999999988 888765 577888999985
Q ss_pred CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 379 RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 379 ~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
.+..++...|.+++||.+.||..|+..+++++||++. ++++++++++.|++++
T Consensus 287 ~~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~-~~~~~~~l~~al~~~~ 339 (350)
T 3fkd_A 287 GTAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ-RPAQNQLFIKALETFL 339 (350)
T ss_dssp SCHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC-CHHHHHHHHHHHHHHH
Confidence 5677788887774799999999998777899999985 6677777777777654
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-44 Score=347.84 Aligned_cols=329 Identities=19% Similarity=0.193 Sum_probs=252.8
Q ss_pred CCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCC-----HHHHHHHHHHHhc-cCCCCC-CcEEEcC
Q 045431 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGE-----KPLRAAIASTFYK-DLGIEE-GDIFVSD 133 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~-----~~lr~~la~~l~~-~~~~~~-~~i~~~~ 133 (433)
.++++|+|+.|.|+++.|+.+.+++.+..... .......|++..|. ++||+++|+|+.+ ++.+++ ++|++|+
T Consensus 20 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~-~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~i~~t~ 98 (391)
T 3bwn_A 20 MSDFVVNLDHGDPTAYEEYWRKMGDRCTVTIR-GCDLMSYFSDMTNLCWFLEPELEDAIKDLHGVVGNAATEDRYIVVGT 98 (391)
T ss_dssp TTTSCEECSSCCCGGGHHHHHHTGGGSCEEEC-TTTTCSSCSCTTSSSTTSCHHHHHHHHHHHHHHCSBCCSSSEEEEEE
T ss_pred CCCCeeEcCCCCCCCCCCHHHHHhHHHHhhcC-ccchhhcCCCCCCcccccCHHHHHHHHHHHHhcCCCCCCCCeEEEeC
Confidence 34578999999998766655555543322111 11245689999998 9999999999974 666666 6999999
Q ss_pred ChHHHHHH-HHHhcCCCC----EEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCCCCccE
Q 045431 134 GAKCDISR-LQIVFGSNV----TMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDI 208 (433)
Q Consensus 134 G~~~al~~-l~~l~~~gd----~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (433)
|+++++.+ +..++++|| +|++++|+|+.+...++..|. +++.++.+.+ ++. .+++++
T Consensus 99 G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~------------~~~~~~~d~~-~l~-----~~~~k~ 160 (391)
T 3bwn_A 99 GSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTYVRS------------GMYKWEGDAW-GFD-----KKGPYI 160 (391)
T ss_dssp HHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHHHHHTTCB------------TTEEEEEEST-TCC-----CCSCEE
T ss_pred ChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHHHHHHcCC------------eEEEecCCHH-HcC-----CCCCEE
Confidence 99999997 577789999 999999999999999998884 5556666542 322 257899
Q ss_pred EEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceee
Q 045431 209 IFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGW 288 (433)
Q Consensus 209 i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~ 288 (433)
|+++|||||||.+++ +|++.++.++++||+||+|.+ +...++.. ..+++|+++||||++|++|+|+||
T Consensus 161 v~l~~p~NPtG~~~~-----~l~~~~~~~~~~ii~De~y~~----~~~~~l~~---~~~~~i~~~S~SK~~g~~GlRiG~ 228 (391)
T 3bwn_A 161 ELVTSPNNPDGTIRE-----TVVNRPDDDEAKVIHDFAYYW----PHYTPITR---RQDHDIMLFTFSKITGHAGSRIGW 228 (391)
T ss_dssp EEEESSCTTTCCCCC-----CCC-----CCCEEEEECTTCS----TTTSCCCC---CBCCSEEEEEHHHHHSCGGGCEEE
T ss_pred EEECCCCCCCchhHH-----HHHHHhhcCCCEEEEeCCCCC----CCCCcccc---CCCCeEEEEechhhcCCCccceEE
Confidence 999999999999997 354422223399999999983 22223322 356899999999999999999999
Q ss_pred eec-cccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCC---------hhHHHHHHHHHHHHHHHHHHHHhh
Q 045431 289 TVI-PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEG---------FKAVHEVIGFYKENTDIIVETFNS 358 (433)
Q Consensus 289 l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~---------~~~~~~~~~~~~~~~~~l~~~l~~ 358 (433)
+++ +++++ +.+.........+++.++|.++.+++++.. ..+++++++.++++++.+.+.|++
T Consensus 229 ~~~~~~~l~--------~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 300 (391)
T 3bwn_A 229 ALVKDKEVA--------KKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKE 300 (391)
T ss_dssp EEECCHHHH--------HHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEecCHHHH--------HHHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 997 77764 667666655556689999999999987532 357899999999999999999998
Q ss_pred c-CCeeec-------------CCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHH
Q 045431 359 L-GFKVYG-------------GKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEA 424 (433)
Q Consensus 359 ~-g~~~~~-------------~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~ 424 (433)
+ ++.+.. +.+|+|+|++++.. +.+..+++++||.+.||..|+. +++++|||+..++++++++
T Consensus 301 ~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~---~~~~~~l~~~gV~v~pg~~fg~-~~~~iRis~~~~~e~i~~~ 376 (391)
T 3bwn_A 301 SDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE---TDLVSELRRHKVMSRAGERCGS-DKKHVRVSMLSREDVFNVF 376 (391)
T ss_dssp CSSEECCCCCCEEETTTTEEECCCCSEEEEEESSS---CCHHHHHHHTTEECEEGGGGTC-CTTEEEEESCSCHHHHHHH
T ss_pred CCCcccccCCccccccccccCCCcceEEEecCCcH---HHHHHHHHHCCEEEccCCCCCC-CCCEEEEEecCCHHHHHHH
Confidence 7 666543 24567999999742 2445566677999999999975 5689999998889999999
Q ss_pred HHHHHHhh
Q 045431 425 CKRFKHLY 432 (433)
Q Consensus 425 l~~l~~~l 432 (433)
+++|++++
T Consensus 377 ~~~L~~~~ 384 (391)
T 3bwn_A 377 LERLANMK 384 (391)
T ss_dssp HHHHHSCC
T ss_pred HHHHHHHH
Confidence 99998875
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-43 Score=343.13 Aligned_cols=338 Identities=17% Similarity=0.174 Sum_probs=262.8
Q ss_pred CCceEEecCC---CCCCCCh--HHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccC--CCCCC--cEEEc
Q 045431 62 DAEVISLGIG---DTTEPIP--EVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDL--GIEEG--DIFVS 132 (433)
Q Consensus 62 ~~~~i~l~~g---~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~--~~~~~--~i~~~ 132 (433)
.+++|+|+.| +|+.+.| +.+.+++.+.+.. .....|++..|.++||+++++++.+.. .++++ +|++|
T Consensus 48 ~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~----~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t 123 (420)
T 4f4e_A 48 RPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEA----GLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQA 123 (420)
T ss_dssp CSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHT----CCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEE
T ss_pred CCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhcc----CCCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEEC
Confidence 3478999999 5655444 8999999998874 345689889999999999999996522 23678 99999
Q ss_pred CChHHHHHHH---HHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCC-------C
Q 045431 133 DGAKCDISRL---QIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS-------T 202 (433)
Q Consensus 133 ~G~~~al~~l---~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 202 (433)
+|+++++.++ ..++++||+|++++|+|+++...++..| .+++.++..++.++..+++ .
T Consensus 124 ~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~~ 191 (420)
T 4f4e_A 124 LGGTGALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAG------------FEVVAYPYYDAKTNGVNFDGMLAALNG 191 (420)
T ss_dssp EHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHTT------------CCEEEEECEETTTTEECHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHcC------------CeEEEeeeeccccCccCHHHHHHHHHh
Confidence 9999999874 4567999999999999999999999999 4778888732223333322 1
Q ss_pred -CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCcccccCCCCcceEEEecccccc
Q 045431 203 -VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN--PRSIFEIPGAKEVAIETSSFSKYA 279 (433)
Q Consensus 203 -~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~vi~i~S~sK~~ 279 (433)
.++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ..++..+.+..+++++++||||.+
T Consensus 192 ~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 271 (420)
T 4f4e_A 192 YEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSF 271 (420)
T ss_dssp CCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTT
T ss_pred CCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccC
Confidence 14678888889999999999999999999999999999999999999888642 344444433457899999999999
Q ss_pred cccccceeeeec--c-ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCC-----hhHHHHHHHHHHHHHHH
Q 045431 280 GFTGVRLGWTVI--P-KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEG-----FKAVHEVIGFYKENTDI 351 (433)
Q Consensus 280 ~~~G~r~G~l~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~ 351 (433)
|++|+|+||+++ + ++++. ++...+.......+..++.+.|.++..++.+.. .+++++++++++++++.
T Consensus 272 ~~~G~RiG~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (420)
T 4f4e_A 272 SLYGERVGALSIITDSKDEAA----RVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNG 347 (420)
T ss_dssp TCGGGCEEEEEEECSSHHHHH----HHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCCCcEEEEEEcCCHHHHH----HHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999864 2 33320 001223322334455578899998888887543 35689999999999999
Q ss_pred HHHHHhhc----CCeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc-ChhHHHHHHH
Q 045431 352 IVETFNSL----GFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG-HRGNVLEACK 426 (433)
Q Consensus 352 l~~~l~~~----g~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~l~~~l~ 426 (433)
+.+.|+++ |+.+..+.+|+|+|+.++ .+.+..+++++||.+.|+ .||+++. ++++++++++
T Consensus 348 l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~l~~~gI~v~~~----------~Ris~~~~~~~~i~~~~~ 413 (420)
T 4f4e_A 348 LVERLKAAGIERDFSFINAQRGMFSYSGLT----SAQVDRLREEFGIYAVST----------GRICVAALNTRNLDVVAN 413 (420)
T ss_dssp HHHHHHHTTCSSCCTHHHHSCSSEEECCCC----HHHHHHHHHHHCEECCTT----------SEEEGGGCCTTTHHHHHH
T ss_pred HHHHHHhcCCCCCceeECCCccEEEEeCCC----HHHHHHHHHhCCEEecCC----------CeEEEecCCHHHHHHHHH
Confidence 99999987 677777789999998874 245566666779999884 2999865 8888999999
Q ss_pred HHHHhhC
Q 045431 427 RFKHLYK 433 (433)
Q Consensus 427 ~l~~~l~ 433 (433)
+|+++++
T Consensus 414 ~l~~~l~ 420 (420)
T 4f4e_A 414 AIAAVLK 420 (420)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 9999874
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=343.29 Aligned_cols=338 Identities=14% Similarity=0.142 Sum_probs=257.5
Q ss_pred CCceEEecCCCC-CCCCh----HHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEE--c
Q 045431 62 DAEVISLGIGDT-TEPIP----EVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFV--S 132 (433)
Q Consensus 62 ~~~~i~l~~g~~-~~~~~----~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~--~ 132 (433)
.+.+|+|+.|.| +...+ +.+.+++.+.... ....+|.+..|.++||+++++++.+ ++.+++++|++ |
T Consensus 27 ~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~----~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t 102 (401)
T 7aat_A 27 NSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAK----KMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQG 102 (401)
T ss_dssp CTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHT----TCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEE
T ss_pred CCCceeeeeeeEECCCCCEechHHHHHHHHHhccc----ccccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEec
Confidence 345899999997 65433 3566666665542 3456898889999999999999975 44456899987 9
Q ss_pred CChHHHHHHH-HHh---cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCC-------C
Q 045431 133 DGAKCDISRL-QIV---FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDL-------S 201 (433)
Q Consensus 133 ~G~~~al~~l-~~l---~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 201 (433)
+|+++++.++ ..+ +++||+|++++|+|.++...++..| .+++.++.+++.++..++ +
T Consensus 103 ~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~l~ 170 (401)
T 7aat_A 103 ISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAG------------LQLQAYRYYDPKTCSLDFTGAMEDIS 170 (401)
T ss_dssp EHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTT------------CEEEEEECEETTTTEECHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHcC------------CeeEeeeeeccccCccCHHHHHHHHH
Confidence 9999999963 333 4899999999999999999999998 477888875432222222 2
Q ss_pred C-CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC---CCcccccCCCCcceEEEecccc
Q 045431 202 T-VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN---PRSIFEIPGAKEVAIETSSFSK 277 (433)
Q Consensus 202 ~-~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~---~~~~~~~~~~~~~vi~i~S~sK 277 (433)
+ .++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ..++..+....+++++++||||
T Consensus 171 ~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK 250 (401)
T 7aat_A 171 KIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAK 250 (401)
T ss_dssp TSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTT
T ss_pred hCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCc
Confidence 2 25678889999999999999999999999999999999999999999887642 2223222223567899999999
Q ss_pred cccccccceeeeec---cccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCC-----hhHHHHHHHHHHHHH
Q 045431 278 YAGFTGVRLGWTVI---PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEG-----FKAVHEVIGFYKENT 349 (433)
Q Consensus 278 ~~~~~G~r~G~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~~~~~~~~ 349 (433)
++|++|+|+||+++ +++.. ..+...+..........++...|.++..++.+.. .++++++++++++++
T Consensus 251 ~~~~~G~RiG~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r 326 (401)
T 7aat_A 251 NMGLYGERAGAFTVICRDAEEA----KRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMR 326 (401)
T ss_dssp TSCCGGGCEEEEEEECSSHHHH----HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCceEEEEEEeCCHHHH----HHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999886 33321 0012444544445555677888888777776432 245788899999999
Q ss_pred HHHHHHHhhcC----CeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec-cChhHHHHH
Q 045431 350 DIIVETFNSLG----FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF-GHRGNVLEA 424 (433)
Q Consensus 350 ~~l~~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~-~~~~~l~~~ 424 (433)
+.+.+.|++++ +.+..|.+++|+|+.++ .+.+..+++++||.+.|+ +||+++ .++++++++
T Consensus 327 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ll~~~gi~v~~~----------~Ris~~~~~~~~i~~~ 392 (401)
T 7aat_A 327 TQLVSNLKKEGSSHNWQHITDQIGMFCFTGLK----PEQVERLTKEFSIYMTKD----------GRISVAGVASSNVGYL 392 (401)
T ss_dssp HHHHHHHHHTTCCSCCHHHHHCCSSEEECCCC----HHHHHHHHHHHCEECCTT----------CEEEGGGCCTTTHHHH
T ss_pred HHHHHHHHhcCCCCCCceecCCcceEEecCCC----HHHHHHHHHhCCEeccCC----------CeEEeccCChhhHHHH
Confidence 99999999875 66667789999998775 355677777789999753 799985 477779999
Q ss_pred HHHHHHhhC
Q 045431 425 CKRFKHLYK 433 (433)
Q Consensus 425 l~~l~~~l~ 433 (433)
+++|+++++
T Consensus 393 ~~~l~~~~~ 401 (401)
T 7aat_A 393 AHAIHQVTK 401 (401)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 999998864
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-42 Score=330.22 Aligned_cols=320 Identities=17% Similarity=0.251 Sum_probs=255.1
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-H
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-L 142 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l 142 (433)
++|+|+.|++++++|+.+ ++ .....|++. +..+||+++|+++ ++++++|++|+|+++++.+ +
T Consensus 30 ~~i~l~~~~~~~~~~~~v------a~------~~~~~Y~~~-~~~~lr~~la~~~----~~~~~~v~~~~G~~~ai~~~~ 92 (356)
T 1fg7_A 30 GDVWLNANEYPTAVEFQL------TQ------QTLNRYPEC-QPKAVIENYAQYA----GVKPEQVLVSRGADEGIELLI 92 (356)
T ss_dssp CSEECSSCCCSSCCCCCC------CC------CCTTSCCCS-SCHHHHHHHHHHH----TSCGGGEEEESHHHHHHHHHH
T ss_pred ceEEeeCCCCCCCCCHhH------hh------hhhccCCCc-cHHHHHHHHHHHh----CCChHHEEEcCCHHHHHHHHH
Confidence 589999999988877765 11 234678654 6999999999998 7888999999999999997 5
Q ss_pred HHhcCCC-CEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC-CCCccEEEEcCCCCccc
Q 045431 143 QIVFGSN-VTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST-VARTDIIFFCSPNNPTG 219 (433)
Q Consensus 143 ~~l~~~g-d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~i~l~~p~nPtG 219 (433)
..++++| |+|++++|+|+++...++..| .+++.++.+.+...+.+ +++ ..++++|++++||||||
T Consensus 93 ~~~~~~g~d~Vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~i~~~~~v~l~~p~nptG 160 (356)
T 1fg7_A 93 RAFCEPGKDAILYCPPTYGMYSVSAETIG------------VECRTVPTLDNWQLDLQGISDKLDGVKVVYVCSPNNPTG 160 (356)
T ss_dssp HHHCCTTTCEEEECSSSCTHHHHHHHHHT------------CEEEECCCCTTSCCCHHHHHTSCTTEEEEEEESSCTTTC
T ss_pred HHHhCCCCCEEEEeCCChHHHHHHHHHcC------------CEEEEeeCCCCCCCCHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 7778999 999999999999999999888 47777877643222211 221 12789999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccC
Q 045431 220 AAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSD 299 (433)
Q Consensus 220 ~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~ 299 (433)
.+++.+++++|+++|+ +|+++|+||+|+++... .++..+....+++++++||||++|++|+|+||++++++++
T Consensus 161 ~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~---~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~--- 233 (356)
T 1fg7_A 161 QLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQ---ASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVI--- 233 (356)
T ss_dssp CCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGG---GCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHHH---
T ss_pred CCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCC---CcHHHHHhhCCCEEEEecchHhhcCchhhhEEEEeCHHHH---
Confidence 9999999999999999 99999999999987521 2333332234678999999999999999999999988874
Q ss_pred CcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcC-CeeecCCCccEEEEECCC
Q 045431 300 GFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLG-FKVYGGKNAPYVWVQFPG 378 (433)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~~~g~~~~~~~~~ 378 (433)
+.+..... .++.+.++|.++.+++++.+.+++++.+++++++++.+.+.|++++ +....+.+|+|+|++++
T Consensus 234 -----~~l~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~- 305 (356)
T 1fg7_A 234 -----NLLMKVIA--PYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFK- 305 (356)
T ss_dssp -----HHHHHHSC--SSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEET-
T ss_pred -----HHHHHhcC--CCCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEECCCCCeEEEEECC-
Confidence 55554332 3368899999999999854434588999999999999999999885 32334568899999997
Q ss_pred CChHHHHHHHHHcCCeEecC-CCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 379 RSSWDVFSEILEKTHVVTTP-GSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 379 ~~~~~~~~~l~~~~gi~v~~-g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+..++...+ .++||.++| |..|+. ++++||++. +++++++++++|++++
T Consensus 306 -~~~~l~~~L-~~~gI~v~~~g~~~~~--~~~iRis~~-~~~e~~~~~~~l~~~~ 355 (356)
T 1fg7_A 306 -ASSAVFKSL-WDQGIILRDQNKQPSL--SGCLRITVG-TREESQRVIDALRAEQ 355 (356)
T ss_dssp -THHHHHHHH-HHTTEECEECTTSTTC--TTEEEEECC-CHHHHHHHHHHHHTCC
T ss_pred -CHHHHHHHH-HHCCEEEEECCCCCCC--CCeEEEEeC-CHHHHHHHHHHHHhhc
Confidence 566677776 566999999 887764 469999985 6899999999998753
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-42 Score=327.65 Aligned_cols=328 Identities=16% Similarity=0.267 Sum_probs=263.7
Q ss_pred CCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHH
Q 045431 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDIS 140 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~ 140 (433)
+++++|||+.|.+++++|+.+.+++.+.+.. ...| +..+..++|+++++++ ++++++|++|+|+++++.
T Consensus 24 ~~~~~idl~~~~~~~~~~~~v~~a~~~~~~~------~~~y-~~~~~~~l~~~la~~~----~~~~~~i~~~~g~t~al~ 92 (361)
T 3ftb_A 24 KGRELLDYSSNINPLGIPKSFLNNIDEGIKN------LGVY-PDVNYRRLNKSIENYL----KLKDIGIVLGNGASEIIE 92 (361)
T ss_dssp ----CEETTCCCCTTCSCHHHHTTHHHHHHG------GGSC-CCTTCHHHHHHHHHHH----TCCSCEEEEESSHHHHHH
T ss_pred CCCCEEEecCCCCCCCCCHHHHHHHHHHHHH------hcCC-CCccHHHHHHHHHHHh----CCCcceEEEcCCHHHHHH
Confidence 3557999999999888999999999998864 2456 4578999999999998 788999999999999999
Q ss_pred HHHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC-CCCccEEEEcCCCCcc
Q 045431 141 RLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST-VARTDIIFFCSPNNPT 218 (433)
Q Consensus 141 ~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~i~l~~p~nPt 218 (433)
++...+ |+|++++|+|.++...++..| .+++.++.+.++++..+ +++ ..+++++++++|||||
T Consensus 93 ~~~~~~---d~vi~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~i~~p~npt 157 (361)
T 3ftb_A 93 LSISLF---EKILIIVPSYAEYEINAKKHG------------VSVVFSYLDENMCIDYEDIISKIDDVDSVIIGNPNNPN 157 (361)
T ss_dssp HHHTTC---SEEEEEESCCTHHHHHHHHTT------------CEEEEEECCTTSCCCHHHHHHHTTTCSEEEEETTBTTT
T ss_pred HHHHHc---CcEEEecCChHHHHHHHHHcC------------CeEEEeecCcccCCCHHHHHHhccCCCEEEEeCCCCCC
Confidence 865555 999999999999999999988 47888888765555432 221 1128999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeee-ccccccc
Q 045431 219 GAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTV-IPKELLF 297 (433)
Q Consensus 219 G~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~-~~~~~~~ 297 (433)
|.+++.+++++|+++|++||+++|+||+|+++.++ .+.+........+++++++|+||.+|++|+|+||++ .+++++
T Consensus 158 G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~- 235 (361)
T 3ftb_A 158 GGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGD-PSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIA- 235 (361)
T ss_dssp TBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCC-TTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCHHHH-
T ss_pred CCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCC-cccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCCHHHH-
Confidence 99999999999999999999999999999988776 333344443345788999999999999999999998 777664
Q ss_pred cCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCe-eecCCCccEEEEE
Q 045431 298 SDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFK-VYGGKNAPYVWVQ 375 (433)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~-~~~~~~g~~~~~~ 375 (433)
+.+..... ..+.+.++|.++.+++++ .+++++.+++++++++.+.+.|+++ ++. +.+ ..|.|+|++
T Consensus 236 -------~~~~~~~~--~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~ 303 (361)
T 3ftb_A 236 -------AKIKAKQN--PWNINCFAEMAAINCLKD--TNYIEESLLWIKKERKRFIEELNKIGFIKRVFS-PHANFVLCR 303 (361)
T ss_dssp -------HHHHTTSC--TTCSCHHHHHHHHHTSSC--HHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEC-CSSSEEEEE
T ss_pred -------HHHHhhCC--CCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCCceecC-CCCeEEEEE
Confidence 55554332 346789999999999984 4678999999999999999999998 787 555 467889999
Q ss_pred CCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHH
Q 045431 376 FPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKH 430 (433)
Q Consensus 376 ~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~ 430 (433)
+++.+..++...+.++ ||.+.||..|+..+++++||++. +.++++++++.|++
T Consensus 304 ~~~~~~~~l~~~l~~~-gi~v~~g~~~~~~~~~~iRis~~-~~~~~~~l~~~l~~ 356 (361)
T 3ftb_A 304 LENISGEKLYDSLLKE-DIVIRRCCNFIGLDDSFVRFAIK-DEKKNTKFLRALKG 356 (361)
T ss_dssp ESSSCHHHHHHHHHTT-TEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHC-CeEEeeCccCCCCCCCEEEEEcC-CHHHHHHHHHHHHH
Confidence 9876677777777665 99999999998777899999986 44454444444444
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-43 Score=340.09 Aligned_cols=335 Identities=16% Similarity=0.185 Sum_probs=262.7
Q ss_pred CCceEEecCCCC-----CCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCC-CCCcEEEcCCh
Q 045431 62 DAEVISLGIGDT-----TEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGI-EEGDIFVSDGA 135 (433)
Q Consensus 62 ~~~~i~l~~g~~-----~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~-~~~~i~~~~G~ 135 (433)
+.++|+|+.|.| ++++++.+.+++.+... .....|++..|.++||+++++++.+..+. .+++|++|+|+
T Consensus 37 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~-----~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~ 111 (418)
T 3rq1_A 37 RENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSD-----SEHVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGG 111 (418)
T ss_dssp GGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCH-----HHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHH
T ss_pred CCCeEECCCCcccCCCCCccccHHHHHHHHHhcc-----cccCCCCCCCChHHHHHHHHHHHhcccCccccccEEECCch
Confidence 447899999987 67788888887766432 22357888899999999999998653221 12399999999
Q ss_pred HHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----C----CC
Q 045431 136 KCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----V----AR 205 (433)
Q Consensus 136 ~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----~~ 205 (433)
++++.+ +..++++||+|++++|+|+++...++..| .+++.++.++++ +..+++. . ++
T Consensus 112 ~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~~~-~~~d~~~l~~~l~~~~~~~ 178 (418)
T 3rq1_A 112 TGGIHHLIHNYTEPGDEVLTADWYWGAYRVICSDTG------------RTLVTYSLFDEH-NNFNHEAFQNRVNELAAKQ 178 (418)
T ss_dssp HHHHHHHHHHHSCTTCEEEEESSCCTHHHHHHHHTT------------CEEEEECSBCTT-SSBCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCchhHHHHHHHcC------------CEEEEEeeeCCC-CCcCHHHHHHHHHHhhccC
Confidence 999997 67888999999999999999999999999 478888875443 2233221 1 15
Q ss_pred cc-EEEEcCC-CCccccCCCHHHHHHHHHHHH------HcCCEEEEeccccccccCCC-CCccc-ccCCCCcc--eEEEe
Q 045431 206 TD-IIFFCSP-NNPTGAAATREQLTRLVQFAK------DNGSIIVYDSAYALYISDDN-PRSIF-EIPGAKEV--AIETS 273 (433)
Q Consensus 206 ~~-~i~l~~p-~nPtG~~~~~~~~~~i~~~a~------~~~~~li~De~~~~~~~~~~-~~~~~-~~~~~~~~--vi~i~ 273 (433)
++ ++++++| |||||.+++.+++++|+++|+ +||++||+||+|.++.+++. ..++. ..++..++ +++++
T Consensus 179 ~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 258 (418)
T 3rq1_A 179 TNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCY 258 (418)
T ss_dssp SEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEE
T ss_pred CCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEE
Confidence 55 7778899 999999999999999999999 89999999999998877643 22332 23333444 58899
Q ss_pred cccccccccccceeeeec---cccccccCCcchhHHHHHHHhh----ccCCCcHHHHHHHHHhcCcCC----h-hHHHHH
Q 045431 274 SFSKYAGFTGVRLGWTVI---PKELLFSDGFPVAKDFNRIVCT----CFNGASNISQAGGLACLSPEG----F-KAVHEV 341 (433)
Q Consensus 274 S~sK~~~~~G~r~G~l~~---~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~q~~~~~~l~~~~----~-~~~~~~ 341 (433)
||||.+|++|+|+||+++ +++++ +.+...... ....++.++|.++.+++++.. + ++++++
T Consensus 259 S~sK~~~~~G~r~G~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 330 (418)
T 3rq1_A 259 SLSKGFTMYGQRVGAMIGISDDEEIA--------DEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCY 330 (418)
T ss_dssp ESTTTTTCCSSCCEEEEEEESSHHHH--------HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred eCCCCCcCcCCcceEEEEEeCCHHHH--------HHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999999999999999998 77774 555443322 234578999999999998643 1 345677
Q ss_pred HHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec-cChhH
Q 045431 342 IGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF-GHRGN 420 (433)
Q Consensus 342 ~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~-~~~~~ 420 (433)
++.++++++.+.+.|+++|+.+..+.+++|+|++++ +..++... ++++||.+.|| .+++||+++ .++++
T Consensus 331 ~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~-l~~~gi~v~~g-------~~~iRis~~~~~~~~ 400 (418)
T 3rq1_A 331 YQLIRDRADIFKQEAAQVGLPMLPYRGGFFITIPTD--SANAICEE-LKKEHIYVIAL-------ANGIRIAACGIPKCQ 400 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCCCSSSEEEEECT--THHHHHHH-HHHTTEECEEC-------SSEEEEEGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEcCCC--CHHHHHHH-HHhCCEEEecC-------CCCeEEEEecCCHHH
Confidence 889999999999999998999888889999999885 45666655 46679999997 367999986 49999
Q ss_pred HHHHHHHHHHhh
Q 045431 421 VLEACKRFKHLY 432 (433)
Q Consensus 421 l~~~l~~l~~~l 432 (433)
+++++++|++++
T Consensus 401 i~~~~~~l~~~l 412 (418)
T 3rq1_A 401 MTGLAEKIYNAM 412 (418)
T ss_dssp HTTHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999876
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=331.78 Aligned_cols=328 Identities=17% Similarity=0.265 Sum_probs=270.4
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCC-CCCcEEEcCChHHHHHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGI-EEGDIFVSDGAKCDISR 141 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~-~~~~i~~~~G~~~al~~ 141 (433)
+.+|+|+.|++++++|+.+.+++.+.+... ....|++ .+..+||+++++++ ++ ++++|++|+|+++++.+
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~----~~~~y~~-~~~~~l~~~la~~~----g~~~~~~i~~~~g~t~a~~~ 100 (367)
T 3euc_A 30 HGLVKLDAMENPYRLPPALRSELAARLGEV----ALNRYPV-PSSEALRAKLKEVM----QVPAGMEVLLGNGSDEIISM 100 (367)
T ss_dssp TTCEECCSSCCCCCCCHHHHHHHHHHHHHH----HTTCSCC-CCHHHHHHHHHHHH----TCCTTCEEEEEEHHHHHHHH
T ss_pred CCeeEccCCCCCCCCCHHHHHHHHHHhhhh----hhhcCCC-CcHHHHHHHHHHHh----CCCCcceEEEcCCHHHHHHH
Confidence 468999999999999999999999988642 3456754 58999999999998 77 78899999999999997
Q ss_pred -HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CC-CccEEEEcCCCC
Q 045431 142 -LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VA-RTDIIFFCSPNN 216 (433)
Q Consensus 142 -l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~-~~~~i~l~~p~n 216 (433)
+..++++||+|++++|+|.++...++..| .+++.++.+.+..++.+ +++ .+ ++++|++++|||
T Consensus 101 ~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~n 168 (367)
T 3euc_A 101 LALAAARPGAKVMAPVPGFVMYAMSAQFAG------------LEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLAYPNN 168 (367)
T ss_dssp HHHHTCCTTCEEEEEESCSCCSCHHHHTTT------------CEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESSCT
T ss_pred HHHHHcCCCCEEEEcCCCHHHHHHHHHHcC------------CeEEEecCCCCCCCCHHHHHHHhhccCCCEEEEcCCCC
Confidence 57778999999999999999999888888 47888888753333222 221 13 789999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHc--CCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecccc
Q 045431 217 PTGAAATREQLTRLVQFAKDN--GSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKE 294 (433)
Q Consensus 217 PtG~~~~~~~~~~i~~~a~~~--~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~ 294 (433)
|||.+++.+++++|+++|++| |+++|+||+|+++...+ ..+ .++ ..+++++++||||. +++|+|+||++++++
T Consensus 169 ptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~-~~~--~~~-~~~~~i~~~s~sK~-~~~G~r~G~~~~~~~ 243 (367)
T 3euc_A 169 PTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQES-WMS--RLT-DFGNLLVMRTVSKL-GLAGIRLGYVAGDPQ 243 (367)
T ss_dssp TTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCC-SGG--GGG-TCTTEEEEEECCCT-TSCSCCEEEEEECHH
T ss_pred CCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccc-hHH--HHh-hCCCEEEEecchhh-cccccCceeeeeCHH
Confidence 999999999999999999999 99999999999876433 222 222 24678999999999 789999999999887
Q ss_pred ccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCCccEEE
Q 045431 295 LLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAPYVW 373 (433)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~ 373 (433)
++ +.+.... ...+.+.++|.++.++++. ..++++.+++++++++.+.+.|+++ |+.+. +..++|+|
T Consensus 244 ~~--------~~~~~~~--~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~~~~~~~ 310 (367)
T 3euc_A 244 WL--------EQLDKVR--PPYNVNVLTEATALFALEH--VAVLDEQAAQLRAERSRVAEGMAAHGGVTVF-PSAANFLL 310 (367)
T ss_dssp HH--------HHHGGGC--CSSCCCHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHTSTTCEEC-CCSSSEEE
T ss_pred HH--------HHHHHhC--CCCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCeEEE
Confidence 74 4444332 2345889999999999986 5678999999999999999999998 88865 46888999
Q ss_pred EECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 374 VQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 374 ~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
++++ +..++...+ .++||.+.+|..|+...++++||++. +++++++++++|+++++
T Consensus 311 ~~~~--~~~~l~~~l-~~~gi~v~~~~~~~~~~~~~iRis~~-~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 311 ARVP--DAAQTFDRL-LARKVLIKNVSKMHPLLANCLRVTVS-TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp EECS--CHHHHHHHH-HTTTEECEECGGGCGGGTTEEEEECC-CHHHHHHHHHHHHHHTC
T ss_pred EECC--CHHHHHHHH-HHCCeEEEECCccCCCCCCEEEEecC-CHHHHHHHHHHHHHHhc
Confidence 9998 566666665 56699999999887666789999976 89999999999999874
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-43 Score=344.99 Aligned_cols=339 Identities=16% Similarity=0.195 Sum_probs=269.8
Q ss_pred ceEEecCCCCC---CCChHHHHHHHH--HHHhhcccCCCCCCC-CCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHH
Q 045431 64 EVISLGIGDTT---EPIPEVITSALA--KRSYALSTQEGYSGY-GAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 64 ~~i~l~~g~~~---~~~~~~~~~a~~--~~~~~~~~~~~~~~Y-~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~ 137 (433)
..|+|+.|.|+ ++.|+.+.+++. +.+.. ......| ++..|.++||+++|+++ ++++++|++|+|+++
T Consensus 26 ~~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~---~~~~~~Yp~~~~g~~~lr~~ia~~~----~~~~~~i~~t~G~~~ 98 (423)
T 3ez1_A 26 LNLNMQRGQPADADFDLSNGLLTVLGAEDVRMD---GLDLRNYPGGVAGLPSARALFAGYL----DVKAENVLVWNNSSL 98 (423)
T ss_dssp CCEESCCCCCCHHHHHTTGGGGGSCCGGGCEET---TEETTSSCSCTTCCHHHHHHHHHHT----TSCGGGEEECSSCHH
T ss_pred ceEecCCCCCChHhCCCcHHHHHHHhhhHHhhc---chhhhCCCCCCCChHHHHHHHHHHh----CCChhhEEEeCCcHH
Confidence 47999999998 677878888775 43331 1334689 88899999999999998 788999999999999
Q ss_pred HHH--H-HHHhcC--C---------CCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC
Q 045431 138 DIS--R-LQIVFG--S---------NVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST 202 (433)
Q Consensus 138 al~--~-l~~l~~--~---------gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 202 (433)
++. + +..++. + ||+|++++|+|+++...++..| .+++.++.+.+ +++.+ +++
T Consensus 99 al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g------------~~~~~v~~~~~-g~d~~~l~~ 165 (423)
T 3ez1_A 99 ELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLG------------FELLTVDMQSD-GPDVDAVER 165 (423)
T ss_dssp HHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHT------------CEEEEEEEETT-EECHHHHHH
T ss_pred HHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcC------------CEEEeccCCCC-CCCHHHHHH
Confidence 996 5 567777 8 5999999999999999999999 47888887654 33222 221
Q ss_pred ----CCCccEEEEc-CCCCccccCCCHHHHHHHHHHH-HHcCCEEEEeccccccccCC-C---CCccccc---CCCCcce
Q 045431 203 ----VARTDIIFFC-SPNNPTGAAATREQLTRLVQFA-KDNGSIIVYDSAYALYISDD-N---PRSIFEI---PGAKEVA 269 (433)
Q Consensus 203 ----~~~~~~i~l~-~p~nPtG~~~~~~~~~~i~~~a-~~~~~~li~De~~~~~~~~~-~---~~~~~~~---~~~~~~v 269 (433)
.+++++|+++ +||||||.+++.+++++|+++| ++||++||+||+|..+.+.+ . +.++.++ .+..+++
T Consensus 166 ~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (423)
T 3ez1_A 166 LAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRA 245 (423)
T ss_dssp HHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSE
T ss_pred HHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeE
Confidence 3678888765 8999999999999999999999 99999999999999654443 1 2344433 1235789
Q ss_pred EEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCc--CCh-hHHHHHHHHHH
Q 045431 270 IETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSP--EGF-KAVHEVIGFYK 346 (433)
Q Consensus 270 i~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~-~~~~~~~~~~~ 346 (433)
++++||||++ ++|+|+||++++++++ +.+.........+++.+.|.++.+++.+ ... +++++.++.++
T Consensus 246 i~~~S~sK~~-~~G~r~G~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 316 (423)
T 3ez1_A 246 FVFASTSKIT-FAGAGLGFVASSEDNI--------RWLSKYLGAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIA 316 (423)
T ss_dssp EEEEESTTTS-CSSSSCEEEEECHHHH--------HHHHHHHHHSCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH
T ss_pred EEEeCchhhc-cCCcceEEEEeCHHHH--------HHHHHHHhhhccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 9999999995 6999999999998885 6777777767777899999999998886 322 57888888999
Q ss_pred HHHHHHHHHHhh----cC--CeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecC-CCCCCC---CCCCeEEEeecc
Q 045431 347 ENTDIIVETFNS----LG--FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTP-GSGFGP---GGEGFIRVSAFG 416 (433)
Q Consensus 347 ~~~~~l~~~l~~----~g--~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~-g~~f~~---~~~~~iRi~~~~ 416 (433)
++++.+.+.|.+ .| +.+..|.+|+|+|++++..+...+. .+++++||.+.| |..|+. ..++++||++..
T Consensus 317 ~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~-~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~ 395 (423)
T 3ez1_A 317 PKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDTAEPVADRVV-KLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTR 395 (423)
T ss_dssp HHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEEEEESSSCHHHHH-HHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSS
T ss_pred HHHHHHHHHHHHhcCcCCCceEEeCCCccEEEEEECCCCcHHHHH-HHHHHCCcEEecCcccccCCCCCCCCeEEEEcCC
Confidence 998888877765 44 6777788999999999865545554 445667999999 766753 357899999865
Q ss_pred -ChhHHHHHHHHHHHhh
Q 045431 417 -HRGNVLEACKRFKHLY 432 (433)
Q Consensus 417 -~~~~l~~~l~~l~~~l 432 (433)
+++++++++++|++++
T Consensus 396 ~~~~~i~~~~~~l~~~l 412 (423)
T 3ez1_A 396 PPVEEVRTAMQVVAACI 412 (423)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 8999999999999875
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=336.09 Aligned_cols=338 Identities=20% Similarity=0.206 Sum_probs=261.0
Q ss_pred CCCceEEecCC---CCCCCCh--HHHHHHHHH-HHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccC--CCCCC--cEE
Q 045431 61 PDAEVISLGIG---DTTEPIP--EVITSALAK-RSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDL--GIEEG--DIF 130 (433)
Q Consensus 61 ~~~~~i~l~~g---~~~~~~~--~~~~~a~~~-~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~--~~~~~--~i~ 130 (433)
..+++|+|+.| +++.++| +.+.+++.+ .+.. .....|++..|.+++|+++++++.+.. .++++ +|+
T Consensus 24 ~~~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~----~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~ 99 (397)
T 3fsl_A 24 PRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQP----HGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATI 99 (397)
T ss_dssp CCSCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSC----CCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEE
T ss_pred CCCCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCc----cccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEE
Confidence 34568999999 4554444 899999998 7753 345689888999999999999996522 23678 999
Q ss_pred EcCChHHHHHHH---HHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----
Q 045431 131 VSDGAKCDISRL---QIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST----- 202 (433)
Q Consensus 131 ~~~G~~~al~~l---~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 202 (433)
+|+|+++++.++ ..++++||+|++++|+|+++...++..| .+++.++..++.++..+++.
T Consensus 100 ~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~l 167 (397)
T 3fsl_A 100 QTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAG------------FEVSTYPWYDEATNGVRFNDLLATL 167 (397)
T ss_dssp EESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHTT------------CCEEEECCEETTTTEECHHHHHHHH
T ss_pred EcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHcC------------CceEEEeeeeccCCcCcHHHHHHHH
Confidence 999999999874 4567999999999999999999999998 47778887332233333221
Q ss_pred ---CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC--CCCcccccCCCCcceEEEecccc
Q 045431 203 ---VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDD--NPRSIFEIPGAKEVAIETSSFSK 277 (433)
Q Consensus 203 ---~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~--~~~~~~~~~~~~~~vi~i~S~sK 277 (433)
.++++++++++||||||.+++.+++++|+++|++||+++|+||+|+++.+++ ...++..+....+++++++||||
T Consensus 168 ~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 247 (397)
T 3fsl_A 168 KTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSK 247 (397)
T ss_dssp TTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTT
T ss_pred HhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccc
Confidence 1467788888999999999999999999999999999999999999988763 23444444334678999999999
Q ss_pred cccccccceeeeecc---ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCC-----hhHHHHHHHHHHHHH
Q 045431 278 YAGFTGVRLGWTVIP---KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEG-----FKAVHEVIGFYKENT 349 (433)
Q Consensus 278 ~~~~~G~r~G~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~~~~~~~~ 349 (433)
++|++|+|+||++++ ++.+. ++...+..........++.++|.++..++.+.. .++++++++++++++
T Consensus 248 ~~~~~G~riG~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 323 (397)
T 3fsl_A 248 IFSLYGERVGGLSVMCEDAEAAG----RVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMR 323 (397)
T ss_dssp TTTCGGGCCEEEEEECSSHHHHH----HHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcCCCeeEEEEecCCHHHHH----HHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999753 23320 001112222223445568899998888887542 356889999999999
Q ss_pred HHHHHHHhhc----CCeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc-ChhHHHHH
Q 045431 350 DIIVETFNSL----GFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG-HRGNVLEA 424 (433)
Q Consensus 350 ~~l~~~l~~~----g~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~l~~~ 424 (433)
+.+.+.|+++ |+.+..+.+|+|+|++++ .+.+..+++++||.+.||. ||+++. ++++++++
T Consensus 324 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gi~v~~g~----------Ris~~~~~~~~i~~~ 389 (397)
T 3fsl_A 324 QELVKVLSTEMPERNFDYLLNQRGMFSYTGLS----AAQVDRLREEFGVYLIASG----------RMCVAGLNTANVQRV 389 (397)
T ss_dssp HHHHHHHHHHCTTSCCTHHHHCCSSEEECCCC----HHHHHHHHHTTCEECCTTC----------EEEGGGCCTTTHHHH
T ss_pred HHHHHHHHhcCCCCCceeecCCceEEEecCCC----HHHHHHHHHhCCEEECCCC----------eEEEEecCHhhHHHH
Confidence 9999999987 677777789999998875 2446666778899999873 999866 88889999
Q ss_pred HHHHHHhh
Q 045431 425 CKRFKHLY 432 (433)
Q Consensus 425 l~~l~~~l 432 (433)
+++|++++
T Consensus 390 ~~~l~~~l 397 (397)
T 3fsl_A 390 AKAFAAVM 397 (397)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhhC
Confidence 99999864
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-43 Score=350.69 Aligned_cols=343 Identities=16% Similarity=0.202 Sum_probs=268.9
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCC-CCCCCHHHHHHHHHHHhcc----CCCC-CCcEEEcCChHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYG-AEQGEKPLRAAIASTFYKD----LGIE-EGDIFVSDGAKC 137 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~-~~~g~~~lr~~la~~l~~~----~~~~-~~~i~~~~G~~~ 137 (433)
.+|+|+.|.++.+ |+.+++++.+.+.. ..|+ +..|.+++|+++++++.+. +.++ +++|++|+|+++
T Consensus 104 ~~i~l~~g~~~~~-~~~~v~a~~~~~~~-------~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~ 175 (533)
T 3f6t_A 104 DAVNYCHTELGLN-RDKVVAEWVNGAVA-------NNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTA 175 (533)
T ss_dssp HHHHHHHHTTCCC-HHHHHHHHHHHHHT-------CSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHH
T ss_pred hheeccCCCCCcC-CcHHHHHHHHHHHh-------CCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHH
Confidence 4689999999875 66666666666642 2444 6789999999999999543 3343 479999999999
Q ss_pred HHHHH-HH-----hcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCc--cCCcccCCCC-----CC
Q 045431 138 DISRL-QI-----VFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTA--ENGFFPDLST-----VA 204 (433)
Q Consensus 138 al~~l-~~-----l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----~~ 204 (433)
++.++ .. ++++||+|++++|+|.++...++..| .+++.++++. +.++..+++. .+
T Consensus 176 al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~~d~~~l~~~l~~ 243 (533)
T 3f6t_A 176 AIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPELKD------------YELVEVDLHSYEKNDWEIEPNEIEKLKDP 243 (533)
T ss_dssp HHHHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSGGGGG------------SEEEEECCCEETTTTSEECHHHHHHHSCT
T ss_pred HHHHHHHHhhhhhccCCcCEEEEcCCCcHHHHHHHHHcC------------CeEEEEEecCCcccCCCCCHHHHHHHhCC
Confidence 99974 55 68999999999999999999888888 4777777754 3333333321 36
Q ss_pred CccEEEEcCCCCccccCCCHHHHHHHHHHHH-HcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccc
Q 045431 205 RTDIIFFCSPNNPTGAAATREQLTRLVQFAK-DNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTG 283 (433)
Q Consensus 205 ~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G 283 (433)
++++|++++||||||.+++.+++++|+++|+ +||++||+||+|+++.++ +.++.... ++++++++||||.+|++|
T Consensus 244 ~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~--~~~~~~~~--~~~~i~~~S~SK~~g~~G 319 (533)
T 3f6t_A 244 SIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPN--FKSIYSVV--PYNTMLVYSYSKLFGCTG 319 (533)
T ss_dssp TEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTT--CCCHHHHS--GGGEEEEEESHHHHTCGG
T ss_pred CCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccC--ccCHhhcC--CCCEEEEecCcccCCCcc
Confidence 8899999999999999999999999999999 689999999999988764 34454442 468999999999999999
Q ss_pred cceeeeecccc-----ccccCC--------------------c----chhHHHHHHHhhccCCCcHHHHHH----HHHhc
Q 045431 284 VRLGWTVIPKE-----LLFSDG--------------------F----PVAKDFNRIVCTCFNGASNISQAG----GLACL 330 (433)
Q Consensus 284 ~r~G~l~~~~~-----~~~~~~--------------------~----~~~~~~~~~~~~~~~~~~~~~q~~----~~~~l 330 (433)
+|+||++++++ ++.... . ++.+.+.+.......+++.+.|.+ +..++
T Consensus 320 ~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L 399 (533)
T 3f6t_A 320 WRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHL 399 (533)
T ss_dssp GCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHH
T ss_pred cceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHH
Confidence 99999999887 321100 0 011122333444556678888987 55666
Q ss_pred C-----cCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCC-----------------CChHHHHHHH
Q 045431 331 S-----PEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPG-----------------RSSWDVFSEI 388 (433)
Q Consensus 331 ~-----~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~-----------------~~~~~~~~~l 388 (433)
. +...++++++++.++++++.+.+.|. .++.+..+.+++|+|++++. .++.+++..+
T Consensus 400 ~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-~~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~l 478 (533)
T 3f6t_A 400 LTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-APKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKL 478 (533)
T ss_dssp TTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-CCCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHH
T ss_pred hhhccccchHHHHHHHHHHHHHHHHHHHHhcC-CCccccCCCceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHH
Confidence 5 23447889999999999999999998 78888888899999999863 3566788888
Q ss_pred HHcCCeEecCCCCCCCCCCCeEEEeecc-ChhHHHHHHHHHHHhh
Q 045431 389 LEKTHVVTTPGSGFGPGGEGFIRVSAFG-HRGNVLEACKRFKHLY 432 (433)
Q Consensus 389 ~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~l~~~l~~l~~~l 432 (433)
++++||.+.||..|+. +++++||+++. +++++++++++|++++
T Consensus 479 l~~~GV~v~pg~~f~~-~~~~iRls~a~~~~e~i~~~i~~L~~~l 522 (533)
T 3f6t_A 479 AEKNGVVLVDGVGFGA-KPGELRVSQANLPTEDYALIGKQVLELL 522 (533)
T ss_dssp HHHTTSSSCTTEEECS-STTEEEEESSSSCHHHHHHHHHHHHHHH
T ss_pred HHhCCEEEeCCcccCC-CCCEEEEEEeeCCHHHHHHHHHHHHHHH
Confidence 8888999999999976 46899999874 8999999999999875
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-43 Score=348.71 Aligned_cols=335 Identities=16% Similarity=0.225 Sum_probs=258.5
Q ss_pred eEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHh-ccC--CC---CCCcEEEcCChHHH
Q 045431 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFY-KDL--GI---EEGDIFVSDGAKCD 138 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~-~~~--~~---~~~~i~~~~G~~~a 138 (433)
+|+|+.|.+++ +++.+.+++.+.+. ...|+++.|.++||+++++++. ++. +. ++++|++|+|++++
T Consensus 106 ~i~l~~g~~~~-~~~~~~~al~~~~~-------~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~ea 177 (546)
T 2zy4_A 106 SLSYVRDQLGL-DPAAFLHEMVDGIL-------GCNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAA 177 (546)
T ss_dssp HHHHHHHTSCC-CHHHHHHHHHHHHH-------TCSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHH
T ss_pred hhecccCCCCC-CChHHHHHHHHhhh-------cCCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHH
Confidence 78999999876 45666667776653 1479888899999999888764 322 22 46899999999999
Q ss_pred HHHH-HH-----hcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCcc
Q 045431 139 ISRL-QI-----VFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTD 207 (433)
Q Consensus 139 l~~l-~~-----l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 207 (433)
+.++ .. ++++||.|++++|+|+++.......+. + .+++.++.+.++++..+++. .++++
T Consensus 178 l~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~-g---------~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k 247 (546)
T 2zy4_A 178 MAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQY-A---------LEEVAINADPSLNWQYPDSELDKLKDPAIK 247 (546)
T ss_dssp HHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTS-C---------CEEEEEECBGGGTTBCCHHHHGGGGSTTEE
T ss_pred HHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCC-C---------cEEEEEecCcccCCCCCHHHHHHhhCCCCe
Confidence 9974 44 478999999999999999887654431 1 36788888776665555332 25789
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHH--HHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccc
Q 045431 208 IIFFCSPNNPTGAAATREQLTRLVQFA--KDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVR 285 (433)
Q Consensus 208 ~i~l~~p~nPtG~~~~~~~~~~i~~~a--~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r 285 (433)
+|+++|||||||.+++.+++++|+++| +++|++||+||+|+++.++ +.++.+.. ++++|+++||||++|++|+|
T Consensus 248 ~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~--~~s~~~~~--~~~~i~~~S~SK~~g~~GlR 323 (546)
T 2zy4_A 248 IFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADD--FQSLFAIC--PENTLLVYSFSKYFGATGWR 323 (546)
T ss_dssp EEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTT--CCCHHHHC--GGGEEEEEESTTTTTCGGGC
T ss_pred EEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhccc--CcCHHHhC--CCCEEEEEeCccccCCCCcc
Confidence 999999999999999999999999999 7899999999999988753 45555542 46899999999999999999
Q ss_pred eeeeecccc-ccccCCcchhHHHHH-------------H-----------------------HhhccCCCcHHHHHHH--
Q 045431 286 LGWTVIPKE-LLFSDGFPVAKDFNR-------------I-----------------------VCTCFNGASNISQAGG-- 326 (433)
Q Consensus 286 ~G~l~~~~~-~~~~~~~~~~~~~~~-------------~-----------------------~~~~~~~~~~~~q~~~-- 326 (433)
+||++++++ ++ +.+.+ + ......+.+.+.|.++
T Consensus 324 iG~~~~~~~~l~--------~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~ 395 (546)
T 2zy4_A 324 LGVVAAHQQNVF--------DLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMAL 395 (546)
T ss_dssp EEEEEEESSCHH--------HHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHH
T ss_pred eEEEEECCHHHH--------HHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHH
Confidence 999999886 53 22210 0 0122345788888763
Q ss_pred ---HHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCC-----------------CChHHHHH
Q 045431 327 ---LACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPG-----------------RSSWDVFS 386 (433)
Q Consensus 327 ---~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~-----------------~~~~~~~~ 386 (433)
.+++.+ +..+++++++.++++++.+.+.|. .++.+.++.+++|+|++++. .++.+++.
T Consensus 396 ~a~~all~~-~~~~~~~~r~~~~~r~~~l~~~L~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~ 473 (546)
T 2zy4_A 396 FSLFALMDE-ADEYKHTLKQLIRRRETTLYRELG-MPPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLF 473 (546)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHHHHHHGGGT-SSCCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHhcC-CCcccCCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHH
Confidence 244543 346789999999999999999886 55665677889999999852 13445566
Q ss_pred HHHHcCCeEecCCCCCCCCCCCeEEEeecc-ChhHHHHHHHHHHHhh
Q 045431 387 EILEKTHVVTTPGSGFGPGGEGFIRVSAFG-HRGNVLEACKRFKHLY 432 (433)
Q Consensus 387 ~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~l~~~l~~l~~~l 432 (433)
++++++||.+.||..|+. +++++||++.. +++++++++++|++++
T Consensus 474 ~ll~~~gV~v~pG~~F~~-~~~~iRis~~~~~~e~i~~~~~~l~~~l 519 (546)
T 2zy4_A 474 RIADETGIVLLPGRGFGS-NRPSGRASLANLNEYEYAAIGRALRKMA 519 (546)
T ss_dssp HHHHHHSCCCEESSCTTC-SSCEEEEESSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCEEEeCccccCC-CCCeEEEEeccCCHHHHHHHHHHHHHHH
Confidence 777778999999999976 56899999876 7899999999998875
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-42 Score=328.17 Aligned_cols=308 Identities=20% Similarity=0.319 Sum_probs=257.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCccc
Q 045431 96 EGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGE 174 (433)
Q Consensus 96 ~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~ 174 (433)
.....|++..|.++||+++++++. ++++++|++|+|+++++.+ +..++++||+|++++|+|+++...++..|
T Consensus 54 ~~~~~y~~~~g~~~l~~~la~~~~---~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g---- 126 (375)
T 3op7_A 54 GTKLNYGWIEGSPAFKKSVSQLYT---GVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYDIPKSLG---- 126 (375)
T ss_dssp TSCCSSCCTTCCHHHHHHHHTTSS---SCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHHHHHHHTT----
T ss_pred cCCcCCCCCCChHHHHHHHHHHhc---cCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHcC----
Confidence 345689899999999999999872 4678999999999999997 67788999999999999999999998888
Q ss_pred ccccccccceEEEeecCccCCcccCCCC-----CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccc
Q 045431 175 FQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYAL 249 (433)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~ 249 (433)
.+++.++.+.++++..+++. .+++++|++++||||||.+++.+++++|+++|++||+++|+||+|++
T Consensus 127 --------~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~ 198 (375)
T 3op7_A 127 --------AEVDLWQIEEENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRS 198 (375)
T ss_dssp --------CEEEEEEEEGGGTTEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCC
T ss_pred --------CEEEEEeccccCCCCCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccc
Confidence 47888888755555444332 36889999999999999999999999999999999999999999998
Q ss_pred cccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHh
Q 045431 250 YISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLAC 329 (433)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 329 (433)
+.+.+ ..++... .+++++++||||.+|++|+|+||++++++++ +.+.........+++.+.|.++..+
T Consensus 199 ~~~~~-~~~~~~~---~~~~i~~~s~sK~~~~~G~r~G~v~~~~~l~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (375)
T 3op7_A 199 FSELD-VPSIIEV---YDKGIAVNSLSKTYSLPGIRIGWVAANHQVT--------DILRDYRDYTMICAGVFDDLVAQLA 266 (375)
T ss_dssp CSSSC-CCCHHHH---CTTEEEEEESSSSSSCGGGCCEEEECCHHHH--------HHHTTTGGGTTSCCCHHHHHHHHHH
T ss_pred ccccC-CCchhhh---cCCEEEEeEChhhcCCcccceEEEEeCHHHH--------HHHHHHHhhhccCCCcHHHHHHHHH
Confidence 77652 2333333 4567999999999998999999999988774 6666655555666788999888888
Q ss_pred cCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCCccEEEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCC
Q 045431 330 LSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAPYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGE 407 (433)
Q Consensus 330 l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~ 407 (433)
++. ...++++.++.++++++.+.+.|++. ++.+..+.+++++|+.++ +.+..++...+++++||.+.||..|+. +
T Consensus 267 l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~ 343 (375)
T 3op7_A 267 LAH-YQEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDMPMEDFCLQLLQEHGVLLVPGNRFER--D 343 (375)
T ss_dssp HHT-HHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSSCHHHHHHHHHHHHCEECEEGGGGTC--T
T ss_pred Hhc-cHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCCCHHHHHHHHHHhCCEEEeChhhhCC--C
Confidence 763 33577888999999999999999987 788888888999999987 456778888887777999999998874 6
Q ss_pred CeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 408 GFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 408 ~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
+++|+++..+.+++++++++|+++++
T Consensus 344 ~~iRi~~~~~~~~i~~~l~~l~~~l~ 369 (375)
T 3op7_A 344 GYVRLGFACEQETLIKGLEKLSQFLR 369 (375)
T ss_dssp TEEEECCCSCHHHHHHHHHHHHHHHG
T ss_pred CeEEEEecCCHHHHHHHHHHHHHHHH
Confidence 89999998888999999999998763
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-46 Score=358.18 Aligned_cols=342 Identities=20% Similarity=0.279 Sum_probs=275.4
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDISR 141 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~al~~ 141 (433)
++|+|+.|++++++|+.+.+++.+++.. ....|++. ..++|+++++++.+ ++.+++++|++|+|+++++.+
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~ 104 (392)
T 3b1d_A 32 QLLPAWIADMDFEVMPEVKQAIHDYAEQ-----LVYGYTYA--SDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISI 104 (392)
Confidence 7899999999999999999999998752 34567553 89999999999976 444788999999999999997
Q ss_pred -HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCC-cccC---CCC---CCCccEEEEcC
Q 045431 142 -LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENG-FFPD---LST---VARTDIIFFCS 213 (433)
Q Consensus 142 -l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~---~~~~~~i~l~~ 213 (433)
+..++++||+|++++|+|+++...++..|. +++.++.+++++ +..+ +++ ..+++++++++
T Consensus 105 ~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~------------~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~ 172 (392)
T 3b1d_A 105 AIQAFTKEGEAVLINSPVYPPFARSVRLNNR------------KLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLCN 172 (392)
Confidence 577789999999999999999988887773 566666642222 2222 222 14688889999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCC-CcceEEEecccccccccccceeeeec
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGA-KEVAIETSSFSKYAGFTGVRLGWTVI 291 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~-~~~vi~i~S~sK~~~~~G~r~G~l~~ 291 (433)
||||||.+++.+++++|+++|++||++||+||+|+++.+.+. +.++..++.. .+++++++||||.+|++|+|+||+++
T Consensus 173 ~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~ 252 (392)
T 3b1d_A 173 PHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAII 252 (392)
Confidence 999999999999999999999999999999999999887653 4455555321 46789999999999999999999999
Q ss_pred ccc-ccccCCcchhHHHHHHHhhcc-CCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhh-c-CCeeecCC
Q 045431 292 PKE-LLFSDGFPVAKDFNRIVCTCF-NGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNS-L-GFKVYGGK 367 (433)
Q Consensus 292 ~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~-g~~~~~~~ 367 (433)
+++ ++ +.+........ .+++.++|.++.+++++ ..+++++.++.++++++.+.+.|++ + ++.+..+.
T Consensus 253 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 323 (392)
T 3b1d_A 253 ENPTLC--------AQFKHQQLVNNHHEVSSLGYIATETAYRY-GKPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKPQ 323 (392)
Confidence 765 54 44544433332 34688899988888874 2457889999999999999999988 5 88888888
Q ss_pred CccEEEEECCC--CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 368 NAPYVWVQFPG--RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 368 ~g~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
+++++|++++. .+..++...+++++||.+.||..|+..+++++||++..+++++++++++|+++++
T Consensus 324 ~~~~~~i~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 324 GTYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIAAPKSLVEEICKRIVCCLP 391 (392)
Confidence 88999999974 3556677777656799999999997666789999988888999999999998763
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-42 Score=331.46 Aligned_cols=338 Identities=14% Similarity=0.133 Sum_probs=259.6
Q ss_pred CCCceEEecCCCC-CCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhcc--CCCCCCcEE--EcCCh
Q 045431 61 PDAEVISLGIGDT-TEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKD--LGIEEGDIF--VSDGA 135 (433)
Q Consensus 61 ~~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~--~~~~~~~i~--~~~G~ 135 (433)
..+++|+|+.|+| +++.|+.+.+++.++.. .....|++..|.++||+++++|+... ..+++++|. .|.|+
T Consensus 39 ~~~~~i~l~~g~~~d~~~~~~v~~a~~~a~~-----~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g 113 (409)
T 4eu1_A 39 PAKRKVNLSIGVYRDDADQPFVLECVKQATL-----GTNMDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGG 113 (409)
T ss_dssp CCSSCEECCCSSCCCTTSCCCCCHHHHTCCC-----CSCCCCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHH
T ss_pred CCcCceeeeeeEEECCCCCEeecHHHHhcCc-----cccccCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccc
Confidence 3457899999998 88777778888877621 45678988999999999999998521 112278884 48999
Q ss_pred HHHHHHH----HHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC--------C
Q 045431 136 KCDISRL----QIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST--------V 203 (433)
Q Consensus 136 ~~al~~l----~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 203 (433)
++++.++ ..++++||+|++++|+|+++...++..| .+++.++.++++++..+++. .
T Consensus 114 ~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~l~~~~ 181 (409)
T 4eu1_A 114 TGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKAG------------MELTPYSYYDPATKGLNLAGMLECLDKAP 181 (409)
T ss_dssp HHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHTT------------CEEEEECCEETTTTEECHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcC------------CeEEEEEeecCcCCcCcHHHHHHHHHhCC
Confidence 9988753 3445899999999999999999999999 47888887443344334321 1
Q ss_pred CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC---CCcccccCCCCcceEEEeccccccc
Q 045431 204 ARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN---PRSIFEIPGAKEVAIETSSFSKYAG 280 (433)
Q Consensus 204 ~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~---~~~~~~~~~~~~~vi~i~S~sK~~~ 280 (433)
.+++++++++||||||.+++.+++++|+++|++||++||+||+|+++.+++. ..++..+.+..+++++++||||++|
T Consensus 182 ~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 261 (409)
T 4eu1_A 182 EGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFG 261 (409)
T ss_dssp TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSS
T ss_pred CCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCccccc
Confidence 2455666689999999999999999999999999999999999999887652 2334433233567899999999999
Q ss_pred ccccceeee--ec-cccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCC-----hhHHHHHHHHHHHHHHHH
Q 045431 281 FTGVRLGWT--VI-PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEG-----FKAVHEVIGFYKENTDII 352 (433)
Q Consensus 281 ~~G~r~G~l--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~l 352 (433)
++|+|+||+ ++ +++++ ..+.+.+..........++.+.|.++.+++++.. .+++++++++++++++.+
T Consensus 262 ~~G~riG~~~~v~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 337 (409)
T 4eu1_A 262 LYGHRCGALHISTASAEEA----KRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRL 337 (409)
T ss_dssp CGGGCCEEEEEECSSHHHH----HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCceEEEEEeCCHHHH----HHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999996 44 44421 0012455554445556678999999988887542 245788999999999999
Q ss_pred HHHHhhcC----CeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc-ChhHHHHHHHH
Q 045431 353 VETFNSLG----FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG-HRGNVLEACKR 427 (433)
Q Consensus 353 ~~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~l~~~l~~ 427 (433)
.+.|+++| +.+..+.+++|+|+.++ .++...+++++||.+.|| .||+++. +++++++++++
T Consensus 338 ~~~L~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~ll~~~gv~v~p~----------~Ri~~~~~~~~~i~~~~~~ 403 (409)
T 4eu1_A 338 VSELKACGSVHDWSHIERQVGMMAYTGLT----REQVELLRSEYHIYMTLN----------GRAAVSGLNSTNVEYVSQA 403 (409)
T ss_dssp HHHHHHTTCCSCCHHHHHSCSSEEECCCC----HHHHHHHHHHHCEECCTT----------CEEEGGGCCTTTHHHHHHH
T ss_pred HHHHHhcCCCCCcceecCCceEEEEeCCC----HHHHHHHHHcCCEEEcCC----------CEEEEEecCHhhHHHHHHH
Confidence 99999987 77777789999997764 356777887789999885 3888754 78889999999
Q ss_pred HHHhhC
Q 045431 428 FKHLYK 433 (433)
Q Consensus 428 l~~~l~ 433 (433)
|+++++
T Consensus 404 l~~~l~ 409 (409)
T 4eu1_A 404 IHNVTK 409 (409)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 998874
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-40 Score=312.97 Aligned_cols=320 Identities=21% Similarity=0.317 Sum_probs=250.9
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR 141 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~ 141 (433)
.+.+|+|+.+++++++++.+.+++.+.+.. ...| +..|..+||+++++++ ++++++|++|+|+++++.+
T Consensus 15 ~~~~i~l~~n~~~~~~~~~v~~a~~~~~~~------~~~y-~~~~~~~lr~~la~~~----~~~~~~i~~t~G~~~~l~~ 83 (337)
T 3p1t_A 15 AAQAVCLAFNENPEAVEPRVQAAIAAAAAR------INRY-PFDAEPRVMRKLAEHF----SCPEDNLMLVRGIDECFDR 83 (337)
T ss_dssp CCCCEECSSCCCCSCCCHHHHHHHHHHGGG------TTSC-CTTHHHHHHHHHHHHH----TSCGGGEEEESHHHHHHHH
T ss_pred CCCceEeeCCCCCCCCCHHHHHHHHHhhhh------hccC-CCCchHHHHHHHHHHh----CcCHHHEEEeCCHHHHHHH
Confidence 346899999999999999999999987753 3567 4679999999999998 8888999999999999998
Q ss_pred HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCCCCCccEEEEcCCCCcccc
Q 045431 142 LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LSTVARTDIIFFCSPNNPTGA 220 (433)
Q Consensus 142 l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~l~~p~nPtG~ 220 (433)
+...+ +||+|++++|+|+++...++..| .+++.++.+.+..++.+ +++..+++++++++||||||.
T Consensus 84 ~~~~~-~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~~~~~~v~i~~p~nptG~ 150 (337)
T 3p1t_A 84 ISAEF-SSMRFVTAWPGFDGYRARIAVSG------------LRHFEIGLTDDLLLDPNDLAQVSRDDCVVLANPSNPTGQ 150 (337)
T ss_dssp HHHHS-TTSEEEEESSSCSHHHHHHTTSC------------CEEEEECBCTTSSBCHHHHTTCCTTEEEEEESSCTTTCC
T ss_pred HHHhc-CCCeEEEeCCCcHHHHHHHHHcC------------CEEEEecCCCCCCCCHHHHHhhcCCCEEEEeCCCCCCCC
Confidence 65555 99999999999999998888888 47888887654333322 334467889999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCC
Q 045431 221 AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDG 300 (433)
Q Consensus 221 ~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~ 300 (433)
+++.+++.+| |+++++ +|+||+|+++...+. ... ...+++++++||||++|++|+|+||++++++++
T Consensus 151 ~~~~~~l~~l---~~~~~~-~ivDea~~~~~~~~~-~~~----~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~---- 217 (337)
T 3p1t_A 151 ALSAGELDQL---RQRAGK-LLIDETYVDYSSFRA-RGL----AYGENELVFRSFSKSYGLAGLRLGALFGPSELI---- 217 (337)
T ss_dssp CCCHHHHHHH---HHHCSE-EEEECTTGGGSSCSS-SCC----CCBTTEEEEEESSSTTCCTTTCCEEEECCHHHH----
T ss_pred CCCHHHHHHH---HHhCCc-EEEECCChhhccccc-ccc----ccCCCEEEEeeCchhccCcchheEEEEeCHHHH----
Confidence 9997665555 567786 556999998765432 111 124678999999999999999999999998875
Q ss_pred cchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCCCC
Q 045431 301 FPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRS 380 (433)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~ 380 (433)
+.+.+.. ...+.+.+.|.++.+++++. .++++..+++.++++.+.+.|+++|+.+.++ .+.|+|+..+.
T Consensus 218 ----~~l~~~~--~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~~~~~~~-- 286 (337)
T 3p1t_A 218 ----AAMKRKQ--WFCNVGTLDLHALEAALDND--RAREAHIAKTLAQRRRVADALRGLGYRVASS-EANFVLVENAA-- 286 (337)
T ss_dssp ----HHHHTTS--CTTCSCHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHHHHHHHTTCCBCCC-SSSEEEEECTT--
T ss_pred ----HHHHhhc--CCCCCCHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHCcCEECCC-CCeEEEEEcCC--
Confidence 5555432 33557889999888888752 3356667777888899999999988887765 56678888763
Q ss_pred hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 381 SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 381 ~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
..++.. +++++||.+.||..|+. ++++||++. ++++++++++.|+++++
T Consensus 287 ~~~~~~-~l~~~gi~v~~g~~~~~--~~~iRis~~-~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 287 GERTLR-FLRERGIQVKDAGQFGL--HHHIRISIG-REEDNDRLLAALAEYSD 335 (337)
T ss_dssp THHHHH-HHHHTTEECEEGGGGTC--CSEEEEECC-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHH-HHHHCCeEEEECccCCC--CCeEEEecC-CHHHHHHHHHHHHHHhh
Confidence 344444 45566999999998865 579999986 78899999999988753
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=330.22 Aligned_cols=339 Identities=16% Similarity=0.145 Sum_probs=263.2
Q ss_pred CCCceEEecCCCC-C----CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEE--
Q 045431 61 PDAEVISLGIGDT-T----EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFV-- 131 (433)
Q Consensus 61 ~~~~~i~l~~g~~-~----~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~-- 131 (433)
.++++|+|+.|.+ + .++++.+.+++.+.+... .....|++..|..+||+++++++.+ ++.+++++|++
T Consensus 28 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~---~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~ 104 (412)
T 1ajs_A 28 PDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNS---SLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQ 104 (412)
T ss_dssp CCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCT---TCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEE
T ss_pred CCCCceeeccceecCCCCCccccHHHHHHHHHhhhCh---hhccCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEE
Confidence 3567899999986 2 245688888888876321 3456798889999999999999954 33347899999
Q ss_pred cCChHHHHHHH---HHhcCCC-----CEEEEeCCCChhhhhhHHHhCCcccccccccccce-EEEeecCccCCcccCCCC
Q 045431 132 SDGAKCDISRL---QIVFGSN-----VTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGK-IEYMRCTAENGFFPDLST 202 (433)
Q Consensus 132 ~~G~~~al~~l---~~l~~~g-----d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 202 (433)
|+|+++++.++ ..++.+| |+|++++|+|+++...++..| .+ ++.++.+.++++..+++.
T Consensus 105 t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~d~~~ 172 (412)
T 1ajs_A 105 SLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAG------------FKDIRSYRYWDTEKRGLDLQG 172 (412)
T ss_dssp EEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTT------------CSCEEEEECEETTTTEECHHH
T ss_pred CCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHcC------------CceeEEEeeecCCCCccCHHH
Confidence 99999999974 3456899 999999999999999999888 46 777776432333333321
Q ss_pred --------CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC---CCCcccccCCCCcceEE
Q 045431 203 --------VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDD---NPRSIFEIPGAKEVAIE 271 (433)
Q Consensus 203 --------~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~---~~~~~~~~~~~~~~vi~ 271 (433)
.++++++++++||||||.+++.+++++|+++|++||++||+||+|.++.+++ .+.++.+++...+++++
T Consensus 173 l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~ 252 (412)
T 1ajs_A 173 FLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFC 252 (412)
T ss_dssp HHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEE
T ss_pred HHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEE
Confidence 1356677789999999999999999999999999999999999999988764 33345444333567899
Q ss_pred Eecccccccccccceeeeec---cccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCC-----hhHHHHHHH
Q 045431 272 TSSFSKYAGFTGVRLGWTVI---PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEG-----FKAVHEVIG 343 (433)
Q Consensus 272 i~S~sK~~~~~G~r~G~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~~ 343 (433)
++||||.+|++|+|+||+++ +++++. .+.+.+.........+++.++|.++.++|++.. .++++++++
T Consensus 253 ~~s~sK~~~~~G~riG~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 328 (412)
T 1ajs_A 253 AQSFSKNFGLYNERVGNLTVVAKEPDSIL----RVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMAD 328 (412)
T ss_dssp EEECTTTSCCGGGCEEEEEEECSSHHHHH----HHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred EEecccccCCCCcceEEEEEecCCHHHHH----HHHHHHHHHHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHH
Confidence 99999999988999999999 665320 012334433334444468899999999987543 247889999
Q ss_pred HHHHHHHHHHHHHhhcC----CeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc-Ch
Q 045431 344 FYKENTDIIVETFNSLG----FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG-HR 418 (433)
Q Consensus 344 ~~~~~~~~l~~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~ 418 (433)
+++++++.+.+.|++++ +.+..+.+|+|+|+.++ .+++..+++++||.+.|+ +||++.. ++
T Consensus 329 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gv~v~~~----------~Ris~~~~~~ 394 (412)
T 1ajs_A 329 RILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLN----PKQVEYLINQKHIYLLPS----------GRINMCGLTT 394 (412)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCC----HHHHHHHHHTTCEECCTT----------SEEEGGGCCT
T ss_pred HHHHHHHHHHHHHHhhCCCCCeeEEcCCCceEEEeCCC----HHHHHHHHHhCCEEecCC----------cEEEeeeCCH
Confidence 99999999999999886 77777788999998765 456677777789999873 6999874 89
Q ss_pred hHHHHHHHHHHHhh
Q 045431 419 GNVLEACKRFKHLY 432 (433)
Q Consensus 419 ~~l~~~l~~l~~~l 432 (433)
+++++++++|++++
T Consensus 395 ~~i~~~~~~l~~~l 408 (412)
T 1ajs_A 395 KNLDYVATSIHEAV 408 (412)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999876
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-41 Score=331.13 Aligned_cols=352 Identities=19% Similarity=0.306 Sum_probs=258.2
Q ss_pred CceE-EecCCCCCCCCh--HHHHHHHHHHHhh-------cccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEE
Q 045431 63 AEVI-SLGIGDTTEPIP--EVITSALAKRSYA-------LSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIF 130 (433)
Q Consensus 63 ~~~i-~l~~g~~~~~~~--~~~~~a~~~~~~~-------~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~ 130 (433)
+++| +|+.|.|+.+++ +.+.+++.+.+.. .........|++..|.++||+++|+|+.+ ++++++++|+
T Consensus 31 ~~~i~~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~ 110 (444)
T 3if2_A 31 DQPVNMLGGGNPAKIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSENIA 110 (444)
T ss_dssp SSCCEECSCCCCCCCHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEE
T ss_pred chhhhccCCCCCCcccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEE
Confidence 4689 999999876322 3344444444432 10001135798899999999999999974 7778999999
Q ss_pred EcCChHHHHHH-HHHhcCCCC--------------EEEEe-CCCChhhhhhHHHhCCcccccccccccceEEEeecCccC
Q 045431 131 VSDGAKCDISR-LQIVFGSNV--------------TMAVQ-DPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAEN 194 (433)
Q Consensus 131 ~~~G~~~al~~-l~~l~~~gd--------------~Vl~~-~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 194 (433)
+|+|+++++.+ +..++++|| +|++. +|+|+.+.......+. +...+ ..++.++.+.++
T Consensus 111 ~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~ 184 (444)
T 3if2_A 111 LTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQH---FAAVL---PHIDEVTHDGEE 184 (444)
T ss_dssp EESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCC---EEECC---CEEEEEEETTEE
T ss_pred EecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhcccccch---hhccC---ceEEeccccccc
Confidence 99999999997 577788888 78775 9999998764321110 00011 356666665421
Q ss_pred C---cccC---CCC-----CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccC
Q 045431 195 G---FFPD---LST-----VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIP 263 (433)
Q Consensus 195 ~---~~~~---~~~-----~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~ 263 (433)
+ +..+ +++ .+++++|++++||||||.+++.+++++|+++|++||++||+||+|+.+.......+.. .
T Consensus 185 g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~--~ 262 (444)
T 3if2_A 185 GFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAH--L 262 (444)
T ss_dssp EEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCC--C
T ss_pred CccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCccccccccccc--c
Confidence 1 1222 222 3578999999999999999999999999999999999999999998532211111111 1
Q ss_pred CCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-hHHHH-H
Q 045431 264 GAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-KAVHE-V 341 (433)
Q Consensus 264 ~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~-~ 341 (433)
...+++++++||||+ +++|+|+||++++++++ +.+.........+++.+.|.++..++..... .+..+ +
T Consensus 263 ~~~~~~i~~~S~sK~-~~~G~r~G~~~~~~~l~--------~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 333 (444)
T 3if2_A 263 NWDNNTILCFSLSKI-GLPGMRTGIIVADAKVI--------EAVSAMNAVVNLAPTRFGAAIATPLVANDRIKQLSDNEI 333 (444)
T ss_dssp CCCTTEEEEEESTTT-TCGGGCCEEEECCHHHH--------HHHHHHHHHHHSSCCCHHHHHHHHHHHTSHHHHHHHHTH
T ss_pred cCCCCEEEEechhhc-cCCCCceEEEEECHHHH--------HHHHHHHHhccCCCChHHHHHHHHHHHcCchhHHHHHHH
Confidence 225688999999997 57999999999998885 6666666655666788999998888875443 34444 7
Q ss_pred HHHHHHHHHHHHHHHhhc----CCeeecCCCccEEEEECCC--CChHHHHHHHHHcCCeEecCCCCCCCCC--------C
Q 045431 342 IGFYKENTDIIVETFNSL----GFKVYGGKNAPYVWVQFPG--RSSWDVFSEILEKTHVVTTPGSGFGPGG--------E 407 (433)
Q Consensus 342 ~~~~~~~~~~l~~~l~~~----g~~~~~~~~g~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~f~~~~--------~ 407 (433)
++.++++++.+.+.|.+. ++.+..+.+|+++|+.++. .+..++...+ .++||.+.||..|.... +
T Consensus 334 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l-~~~gi~v~~g~~~~~~~~~~~~~~~~ 412 (444)
T 3if2_A 334 KPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLPISTLDLYERL-KAKGTLIVPSEYFFPGVDVSDYQHAH 412 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCSSCHHHHHHHH-HHTTEECEEGGGSCTTCCCTTCSGGG
T ss_pred HHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCCCCCHHHHHHHH-HHCCeEEecchhhcCCCCCcccccCC
Confidence 778899999988888763 5677777889999999984 4666777666 45699999999985431 3
Q ss_pred CeEEEeeccChhHHHHHHHHHHHhh
Q 045431 408 GFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 408 ~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+++||++..+++++++++++|++++
T Consensus 413 ~~iRis~~~~~e~i~~~l~~l~~~~ 437 (444)
T 3if2_A 413 ECIRMSIAADEQTLIDGIKVIGEVV 437 (444)
T ss_dssp SEEEEESSSCHHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCHHHHHHHHHHHHHHH
Confidence 6899998779999999999999875
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-41 Score=331.03 Aligned_cols=340 Identities=15% Similarity=0.156 Sum_probs=257.8
Q ss_pred CCceEEecCCCC-CCCChHHHHHHHHHHHhhcc--cCCCCCCCCCCCCCHHHHHHHHHHHhccCCCC-----CCcEEE--
Q 045431 62 DAEVISLGIGDT-TEPIPEVITSALAKRSYALS--TQEGYSGYGAEQGEKPLRAAIASTFYKDLGIE-----EGDIFV-- 131 (433)
Q Consensus 62 ~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~~--~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~-----~~~i~~-- 131 (433)
.+..|+|+.|.| ++..++.+.+++.+++.+.. .......|.+..|.+++|+++++++. +.+ +++|++
T Consensus 48 ~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~---g~~~~~~~~~~i~~~~ 124 (448)
T 3meb_A 48 NPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLMF---GKDSKAAQEGRIASCQ 124 (448)
T ss_dssp CTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHHH---CTTCHHHHTTCEEEEE
T ss_pred CCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhc---CCCccccCcCcEEEEE
Confidence 345799999998 66555444445554422221 11445689888999999999999984 333 789999
Q ss_pred cCChHHHHHH---HHHhcCCCCEEEEeCCCChhhhhhHH----HhCCcccccccccccceEEEeecCccC-CcccCCCC-
Q 045431 132 SDGAKCDISR---LQIVFGSNVTMAVQDPSYPAYVDSSV----IMGQTGEFQKDAEKYGKIEYMRCTAEN-GFFPDLST- 202 (433)
Q Consensus 132 ~~G~~~al~~---l~~l~~~gd~Vl~~~p~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~- 202 (433)
|+|+++++.+ +..++.+||+|++++|+|+++...++ ..| .+++.++..+++ ++..+++.
T Consensus 125 t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G------------~~v~~~~~~~~~~~~~~d~e~l 192 (448)
T 3meb_A 125 SLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLK------------VPYKEYTYLRKDGELEIDFSNT 192 (448)
T ss_dssp ESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTT------------SCCEEECCBCTTSCSSBCHHHH
T ss_pred CCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCC------------CeEEEEeccccccCCCcCHHHH
Confidence 9999999976 25667999999999999999999998 788 477788873332 33344322
Q ss_pred ------C-CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC---CCcccccCCCCcceEEE
Q 045431 203 ------V-ARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN---PRSIFEIPGAKEVAIET 272 (433)
Q Consensus 203 ------~-~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~---~~~~~~~~~~~~~vi~i 272 (433)
. ++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ..++..+....++++++
T Consensus 193 ~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (448)
T 3meb_A 193 KKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVA 272 (448)
T ss_dssp HHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEE
T ss_pred HHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEE
Confidence 1 3466777789999999999999999999999999999999999999887641 22333332234678999
Q ss_pred ecccccccccccceeee--ec--------cccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-----hH
Q 045431 273 SSFSKYAGFTGVRLGWT--VI--------PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-----KA 337 (433)
Q Consensus 273 ~S~sK~~~~~G~r~G~l--~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-----~~ 337 (433)
+||||.+|++|+|+||+ ++ ++... ...+.+.+.......+..++.+.|.++.+++.+... ++
T Consensus 273 ~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~---~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~ 349 (448)
T 3meb_A 273 QSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKAL---SAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDN 349 (448)
T ss_dssp EECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHH---HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred ecccccCCCccccceeeeeeeccccccccCCHHH---HHHHHHHHHHHHhcccCCccHHHHHHHHHHhcChHHHHHHHHH
Confidence 99999999999999998 66 43210 001135555555556667889999999999886431 45
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC---------CeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCC
Q 045431 338 VHEVIGFYKENTDIIVETFNSLG---------FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEG 408 (433)
Q Consensus 338 ~~~~~~~~~~~~~~l~~~l~~~g---------~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~ 408 (433)
+++++++++++++.+.+.|+++| +.+..+.+|+|+|+.++ .++...+++++||.+.||+
T Consensus 350 ~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~ll~~~gV~v~~G~-------- 417 (448)
T 3meb_A 350 VKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGMFTFTGLT----PEHVDYLKEKWSIYLVKAG-------- 417 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSSEEECCCC----HHHHHHHHHHHCEEECSGG--------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCceEEEecCCC----HHHHHHHHHhCCEEEeCCC--------
Confidence 78899999999999999999873 55556789999998875 4677777778899999875
Q ss_pred eEEEeecc-ChhHHHHHHHHHHHhh
Q 045431 409 FIRVSAFG-HRGNVLEACKRFKHLY 432 (433)
Q Consensus 409 ~iRi~~~~-~~~~l~~~l~~l~~~l 432 (433)
.|||++. +++++++++++|++++
T Consensus 418 -gRis~a~~~~~~i~~~~~~l~~~l 441 (448)
T 3meb_A 418 -GRMSMCGLTESNCDYVAEAIHDAV 441 (448)
T ss_dssp -GEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred -cEEEEecCCHHHHHHHHHHHHHHH
Confidence 2999876 8888999999999875
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=328.97 Aligned_cols=336 Identities=17% Similarity=0.196 Sum_probs=255.2
Q ss_pred CceEEecCCCC---CC--CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhcc--CCCCCCcEEE--cC
Q 045431 63 AEVISLGIGDT---TE--PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKD--LGIEEGDIFV--SD 133 (433)
Q Consensus 63 ~~~i~l~~g~~---~~--~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~--~~~~~~~i~~--~~ 133 (433)
+++|+|+.|.+ +. ++++.+.+++.+.+.. .....|++..|..+||+++++++.+. ..+++++|++ |+
T Consensus 26 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~----~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~ 101 (396)
T 2q7w_A 26 PGKINLGIGVYKDETGKTPVLTSVKKAEQYLLEN----ETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTP 101 (396)
T ss_dssp --CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHH----CCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEES
T ss_pred CCceecccccccCCCCCccCcHHHHHHHHhhcCc----ccccCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEEecc
Confidence 46899999983 22 4668999999887754 23457988899999999999998642 1246889998 99
Q ss_pred ChHHHHHHH-HHh--cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-------C
Q 045431 134 GAKCDISRL-QIV--FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-------V 203 (433)
Q Consensus 134 G~~~al~~l-~~l--~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 203 (433)
|+++++.++ ..+ +.+||+|++++|+|+++...++..| .+++.++.+.++++..+++. .
T Consensus 102 g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 169 (396)
T 2q7w_A 102 GGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAG------------LEVREYAYYDAENHTLDFDALINSLNEA 169 (396)
T ss_dssp HHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTT------------CEEEEEECEETTTTEECHHHHHHHHTTC
T ss_pred cchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcC------------CceEEEecccCCCCCcCHHHHHHHHHhC
Confidence 999999974 333 4799999999999999999999888 47777877432222233221 1
Q ss_pred -CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC--CCCcccccCCCCcceEEEeccccccc
Q 045431 204 -ARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDD--NPRSIFEIPGAKEVAIETSSFSKYAG 280 (433)
Q Consensus 204 -~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~--~~~~~~~~~~~~~~vi~i~S~sK~~~ 280 (433)
++++++++++||||||.+++.+++++|+++|++||+++|+||+|+++.+++ ...++..++...+++++++||||.+|
T Consensus 170 ~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~ 249 (396)
T 2q7w_A 170 QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFG 249 (396)
T ss_dssp CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTT
T ss_pred CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEecccccc
Confidence 246677778999999999999999999999999999999999999987753 23344434322467899999999999
Q ss_pred ccccceeeeec---cccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcC----C-hhHHHHHHHHHHHHHHHH
Q 045431 281 FTGVRLGWTVI---PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPE----G-FKAVHEVIGFYKENTDII 352 (433)
Q Consensus 281 ~~G~r~G~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~----~-~~~~~~~~~~~~~~~~~l 352 (433)
++|+|+||+++ +++.+ ..+.+.+.......+.+++.++|.++.+++++. . .+++++++++++++++.+
T Consensus 250 ~~G~riG~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 325 (396)
T 2q7w_A 250 LYNERVGACTLVAADSETV----DRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLF 325 (396)
T ss_dssp CGGGCCEEEEEECSSHHHH----HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHH
T ss_pred ccccccceEEEEcCCHHHH----HHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999986 34321 001233443333444556899999999998854 1 257788899999999999
Q ss_pred HHHHhhcC----CeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc-ChhHHHHHHHH
Q 045431 353 VETFNSLG----FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG-HRGNVLEACKR 427 (433)
Q Consensus 353 ~~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~l~~~l~~ 427 (433)
.+.|++++ +.+..+.+|+|+|+.++ . +.+..+++++||.+.|| +||++.. +++++++++++
T Consensus 326 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~l~~~gv~v~~~----------~Ris~~~~~~e~i~~~~~~ 391 (396)
T 2q7w_A 326 VNTLQEKGANRDFSFIIKQNGMFSFSGLT---K-EQVLRLREEFGVYAVAS----------GRVNVAGMTPDNMAPLCEA 391 (396)
T ss_dssp HHHHHHTTCCSCCTHHHHCCSSEEECCCC---H-HHHHHHHHHHCEECCTT----------CEEEGGGCCTTTHHHHHHH
T ss_pred HHHHHhcCCCCCcceecCCCceEEEecCC---H-HHHHHHHHhcCeeecCC----------ceEEEeecCHHHHHHHHHH
Confidence 99999986 77777788999998775 2 45666676779999873 6999865 89999999999
Q ss_pred HHHhh
Q 045431 428 FKHLY 432 (433)
Q Consensus 428 l~~~l 432 (433)
|++++
T Consensus 392 l~~~l 396 (396)
T 2q7w_A 392 IVAVL 396 (396)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 98864
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-40 Score=313.14 Aligned_cols=316 Identities=18% Similarity=0.282 Sum_probs=249.1
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQ 143 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l~ 143 (433)
++|+|+.|.++++.|+.+.+++.+.+.+ .....|+. .+..++|+++++++.+. .+++++|++|+|+++++.++.
T Consensus 20 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~----~~~~~y~~-~~~~~lr~~la~~~~~~-~~~~~~v~~~~G~~~al~~~~ 93 (335)
T 1uu1_A 20 DKTYLALNENPFPFPEDLVDEVFRRLNS----DALRIYYD-SPDEELIEKILSYLDTD-FLSKNNVSVGNGADEIIYVMM 93 (335)
T ss_dssp CSEEESSCCCSSCCCHHHHHHHHHTCCG----GGGGSCCC-SSCHHHHHHHHHHHTCS-SCCGGGEEEESSHHHHHHHHH
T ss_pred cceECCCCCCCCCCCHHHHHHHHHHhhh----hhhhcCCC-CchHHHHHHHHHHcCCC-CCCHHHEEEcCChHHHHHHHH
Confidence 5799999999888899999999987742 23456744 47999999999998322 278899999999999999865
Q ss_pred HhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCC
Q 045431 144 IVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAAT 223 (433)
Q Consensus 144 ~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~ 223 (433)
..+ ||+|+++ |+|+++...++..| .+++.++.+.+ +..+++..+++++|++++||||||.+++
T Consensus 94 ~~~--gd~Vl~~-p~y~~~~~~~~~~g------------~~~~~v~~~~~--~~~d~~~l~~~~~v~l~~p~nptG~~~~ 156 (335)
T 1uu1_A 94 LMF--DRSVFFP-PTYSCYRIFAKAVG------------AKFLEVPLTKD--LRIPEVNVGEGDVVFIPNPNNPTGHVFE 156 (335)
T ss_dssp HHS--SEEEECS-SSCHHHHHHHHHHT------------CEEEECCCCTT--SCCCCCCCCTTEEEEEESSCTTTCCCCC
T ss_pred HHh--CCcEEEC-CCcHHHHHHHHHcC------------CeEEEeccCCC--CCCCHHHcCCCCEEEEeCCCCCCCCCCC
Confidence 555 9999999 99999999988888 47778887543 2333333367899999999999999999
Q ss_pred HHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcch
Q 045431 224 REQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPV 303 (433)
Q Consensus 224 ~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~ 303 (433)
.+++++|+++| | ++|+||+|+++... ...++ ++ ..+++++++||||.+|++|+|+||++++++++
T Consensus 157 ~~~l~~l~~~~---~-~li~De~~~~~~~~-~~~~~--~~-~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~------- 221 (335)
T 1uu1_A 157 REEIERILKTG---A-FVALDEAYYEFHGE-SYVDF--LK-KYENLAVIRTFSKAFSLAAQRVGYVVASEKFI------- 221 (335)
T ss_dssp HHHHHHHHHTT---C-EEEEECTTHHHHCC-CCGGG--GG-TCSSEEEEEESTTTTTCGGGCCEEEEECHHHH-------
T ss_pred HHHHHHHHHhC---C-EEEEECcchhhcch-hHHHH--hh-hCCCEEEEecchhhcCCcccCeEEEEeCHHHH-------
Confidence 99888888877 7 89999999986542 11221 22 24578999999999999999999999988774
Q ss_pred hHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCCCChHH
Q 045431 304 AKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSWD 383 (433)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~ 383 (433)
+.+.... ...+.+.++|.++.+++++ .+++++.+++++++++.+.+.|+++|+.+. +.+++|+|++++..+..+
T Consensus 222 -~~l~~~~--~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~~~~~~~~~~~~~~ 295 (335)
T 1uu1_A 222 -DAYNRVR--LPFNVSYVSQMFAKVALDH--REIFEERTKFIVEERERMKSALREMGYRIT-DSRGNFVFVFMEKEEKER 295 (335)
T ss_dssp -HHHHHHS--CTTCSCHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHHTCCBC-CCCSSEEEEECCTHHHHH
T ss_pred -HHHHHhc--CCCCcCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHCCcEEc-CCCCeEEEEECCCCCHHH
Confidence 5555433 2346889999999999875 356788999999999999999998887765 457889999997533455
Q ss_pred HHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 384 VFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 384 ~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+...+.+ +||.+.| .++++||++. +.+++++++++|++++
T Consensus 296 ~~~~l~~-~gi~v~~-------~~~~iRis~~-~~~~i~~~~~~l~~~~ 335 (335)
T 1uu1_A 296 LLEHLRT-KNVAVRS-------FREGVRITIG-KREENDMILRELEVFK 335 (335)
T ss_dssp HHHHHHH-HTEEEEE-------ETTEEEEECC-CHHHHHHHHHHHHCC-
T ss_pred HHHHHHH-CCEEEEE-------CCCeEEEEeC-CHHHHHHHHHHHHhhC
Confidence 6666665 5999988 2468999985 4678999999998753
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=330.35 Aligned_cols=327 Identities=16% Similarity=0.173 Sum_probs=255.1
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCC-C---CHHHHHHHHHHHhc--cCCCCCCcEEEcCChH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQ-G---EKPLRAAIASTFYK--DLGIEEGDIFVSDGAK 136 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~-g---~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~ 136 (433)
+.+|+|+.|+|++++|+.+.+++.+++.... .....|++.. | .++||+++|+|+.+ +..+++++|++|+|++
T Consensus 56 ~~~i~l~~g~~~~~~~~~v~~a~~~~l~~~~--~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~ 133 (427)
T 2hox_A 56 GCSADVASGDGLFLEEYWKQHKEASAVLVSP--WHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVT 133 (427)
T ss_dssp TCCEECCSCCCGGGHHHHTTSHHHHCEEECT--TTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHH
T ss_pred CceEEecCcCCCCCCCHHHHHhHHhhhhcCC--cccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHH
Confidence 3689999999988777888888887663211 2223588877 8 99999999999975 3446889999999999
Q ss_pred HHHHH-HHHh--------cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCCCCcc
Q 045431 137 CDISR-LQIV--------FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTD 207 (433)
Q Consensus 137 ~al~~-l~~l--------~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (433)
+++.+ +..+ +++||.|++++|+|+.+...++..|.. ++....+.+ .+...+ .++++
T Consensus 134 ~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~------------~~~~~~d~~-~l~~~~--~~~~k 198 (427)
T 2hox_A 134 QLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKK------------GYVWAGNAA-NYVNVS--NPEQY 198 (427)
T ss_dssp HHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBT------------TEEEEEEGG-GGTTCS--CGGGE
T ss_pred HHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHHHHcCCe------------eeeecCCHH-HHHHhh--cCCce
Confidence 99997 5778 899999999999999999999998853 333333222 221112 24689
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccccccee
Q 045431 208 IIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLG 287 (433)
Q Consensus 208 ~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G 287 (433)
+|+++|||||||.+++ +.+ + ++.+|.|+.|.+ ...++..++ .+++|+++||||.+|++|+|+|
T Consensus 199 ~v~l~~p~NPtG~~~~-~~l-------~--~~~~i~d~~~~~-----~~~s~~~~~--~~~~i~~~S~SK~~g~~G~RiG 261 (427)
T 2hox_A 199 IEMVTSPNNPEGLLRH-AVI-------K--GCKSIYDMVYYW-----PHYTPIKYK--ADEDILLFTMSKFTGHSGSRFG 261 (427)
T ss_dssp EEEEESSCTTTCCCCC-CSS-------T--TCEEEEECTTCS-----TTTSCCCSC--BCCSEEEEEHHHHTSCGGGCCE
T ss_pred EEEEcCCCCCcccccH-HHH-------c--CCCEEEeecccC-----CCCCccccC--CCceEEEEeChhcCCCCCceEE
Confidence 9999999999999999 422 2 566788877652 233444443 5688999999999999999999
Q ss_pred eeecc-ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcC----------ChhHHHHHHHHHHHHHHHHHHHH
Q 045431 288 WTVIP-KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPE----------GFKAVHEVIGFYKENTDIIVETF 356 (433)
Q Consensus 288 ~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~----------~~~~~~~~~~~~~~~~~~l~~~l 356 (433)
|++++ ++++ +.+.+.......+++.++|.++..+|++. ..+++++.++.++++++.+.+.|
T Consensus 262 ~~~~~~~~l~--------~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 333 (427)
T 2hox_A 262 WALIKDESVY--------NNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALL 333 (427)
T ss_dssp EEEECCHHHH--------HHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCHHHH--------HHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99995 6664 67777666666678999999988888752 12567888999999999999999
Q ss_pred hhc-CCee--------------ecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHH
Q 045431 357 NSL-GFKV--------------YGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNV 421 (433)
Q Consensus 357 ~~~-g~~~--------------~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l 421 (433)
+++ |+.+ ..|.+|+|+|++++. +..++...+++++||.++||..|+. +++++|||+..+++++
T Consensus 334 ~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~-~~~~~~~~ll~~~gI~v~pg~~f~~-~~~~~Ris~~~~~e~l 411 (427)
T 2hox_A 334 DQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW-EEDKDCYQTFQNGRINTQNGVGFEA-SSRYVRLSLIKTQDDF 411 (427)
T ss_dssp TTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS-GGGCSHHHHHHHTTEECEEGGGGTS-CTTEEEEECSSCHHHH
T ss_pred HhCcCccccccccccccccccccCCCCceEEEEECCC-cHHHHHHHHHHHCCEEEcCCCccCC-CCCEEEEEecCCHHHH
Confidence 987 6554 245679999999975 3455677777777999999999976 6789999998899999
Q ss_pred HHHHHHHHHhhC
Q 045431 422 LEACKRFKHLYK 433 (433)
Q Consensus 422 ~~~l~~l~~~l~ 433 (433)
++++++|+++++
T Consensus 412 ~~~l~~l~~~~~ 423 (427)
T 2hox_A 412 DQLMYYLKDMVK 423 (427)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-41 Score=329.56 Aligned_cols=337 Identities=17% Similarity=0.180 Sum_probs=257.3
Q ss_pred CCCceEEecCCCC-CC----CChHHHHHHHHH-HHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEE-
Q 045431 61 PDAEVISLGIGDT-TE----PIPEVITSALAK-RSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFV- 131 (433)
Q Consensus 61 ~~~~~i~l~~g~~-~~----~~~~~~~~a~~~-~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~- 131 (433)
.++++|+|+.|.+ +. ++++.+.+++.+ .+.. .....|++..|.++||+++++++.+ ++.+++++|++
T Consensus 27 ~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~----~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~ 102 (412)
T 1yaa_A 27 QRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDS----SYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISV 102 (412)
T ss_dssp CCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCT----TCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEE
T ss_pred CCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCc----ccccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEE
Confidence 3457899999986 32 467889999888 7652 3345788889999999999999964 33356899999
Q ss_pred -cCChHHHHHHH---HHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeec-CccCCcccCCCC----
Q 045431 132 -SDGAKCDISRL---QIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRC-TAENGFFPDLST---- 202 (433)
Q Consensus 132 -~~G~~~al~~l---~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---- 202 (433)
|+|+++++.++ ...+.+||+|++++|+|+++...++..| .+++.++. +.+ ++..+++.
T Consensus 103 ~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~~~-~~~~d~~~l~~~ 169 (412)
T 1yaa_A 103 QSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQG------------LKTATYPYWANE-TKSLDLNGFLNA 169 (412)
T ss_dssp EEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTT------------CCEEEEECEETT-TTEECHHHHHHH
T ss_pred eccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHcC------------ceEEEEeeecCC-CCccCHHHHHHH
Confidence 99999999864 4556899999999999999999988888 46777776 321 22233221
Q ss_pred ---CCCccEEEE-cCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC---CCCcccccCCCCc---ceEEE
Q 045431 203 ---VARTDIIFF-CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDD---NPRSIFEIPGAKE---VAIET 272 (433)
Q Consensus 203 ---~~~~~~i~l-~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~---~~~~~~~~~~~~~---~vi~i 272 (433)
.+..+++++ ++||||||.+++.+++++|+++|++||++||+||+|.++.+++ .+.++..+....+ +++++
T Consensus 170 l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 249 (412)
T 1yaa_A 170 IQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVC 249 (412)
T ss_dssp HHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEE
T ss_pred HHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEE
Confidence 112344555 8999999999999999999999999999999999999887764 2333433322223 78999
Q ss_pred ecccccccccccceeeee--c-----cccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCC-----hhHHHH
Q 045431 273 SSFSKYAGFTGVRLGWTV--I-----PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEG-----FKAVHE 340 (433)
Q Consensus 273 ~S~sK~~~~~G~r~G~l~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~-----~~~~~~ 340 (433)
+||||.+|++|+|+||++ + +++.+ .++.+.+.......+.+++.+.|.++.+++++.. .+++++
T Consensus 250 ~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~----~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 325 (412)
T 1yaa_A 250 QSFAKNAGMYGERVGCFHLALTKQAQNKTIK----PAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVT 325 (412)
T ss_dssp EECTTTSCCGGGCEEEEEEECCSCTTHHHHH----HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred eccCCCCCCcCCcceEEEEEecCCCCCHHHH----HHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999997799999998 7 44410 0012555554444455568899999999987543 247899
Q ss_pred HHHHHHHHHHHHHHHHhhcC----CeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc
Q 045431 341 VIGFYKENTDIIVETFNSLG----FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG 416 (433)
Q Consensus 341 ~~~~~~~~~~~l~~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~ 416 (433)
++++++++++.+.+.|++++ +.+..+.+|+++|+.++ .. .+..+++++||.+.| ++||++..
T Consensus 326 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~l~~~gi~v~~----------~~Ris~~~ 391 (412)
T 1yaa_A 326 MSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLT---PQ-MVKRLEETHAVYLVA----------SGRASIAG 391 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCCC---HH-HHHHHHHHHCEECCT----------TSEEEGGG
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCCC---HH-HHHHHHHhCCEEecc----------CcEEEEcc
Confidence 99999999999999999876 77777788999998764 33 346777677999976 48999865
Q ss_pred -ChhHHHHHHHHHHHhh
Q 045431 417 -HRGNVLEACKRFKHLY 432 (433)
Q Consensus 417 -~~~~l~~~l~~l~~~l 432 (433)
+++++++++++|++++
T Consensus 392 ~~~~~i~~~~~~l~~~~ 408 (412)
T 1yaa_A 392 LNQGNVEYVAKAIDEVV 408 (412)
T ss_dssp CCTTTHHHHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHH
Confidence 8999999999998875
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-40 Score=314.11 Aligned_cols=327 Identities=18% Similarity=0.213 Sum_probs=257.4
Q ss_pred eEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHHHHH-
Q 045431 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDISR- 141 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~al~~- 141 (433)
.|||+.|++++++++.+.+++.+.+.+.. .....|++..+ .++|+++++++.+ ++++++++|++|+|+++++.+
T Consensus 32 ~idl~~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~y~~~~~-~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~ 108 (369)
T 3cq5_A 32 DIRLNTNENPYPPSEALVADLVATVDKIA--TELNRYPERDA-VELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQL 108 (369)
T ss_dssp SEECSSCCCCSCCCHHHHHHHHHHHHHHG--GGTTSCCCTTC-HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHH
T ss_pred ceeccCCCCCCCCCHHHHHHHHHHHHhcc--cccccCCCccH-HHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHH
Confidence 39999999988899999999999887532 23457866555 7999999999875 567788999999999999987
Q ss_pred HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CC-CccEEEEcCCCCc
Q 045431 142 LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VA-RTDIIFFCSPNNP 217 (433)
Q Consensus 142 l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~-~~~~i~l~~p~nP 217 (433)
+..++++||+|++++|+|+++...++..| .+++.++.+.+...+.+ +++ .+ ++++|++++||||
T Consensus 109 ~~~l~~~gd~Vl~~~~~y~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~np 176 (369)
T 3cq5_A 109 LQAFGGPGRTALGFQPSYSMHPILAKGTH------------TEFIAVSRGADFRIDMDVALEEIRAKQPDIVFVTTPNNP 176 (369)
T ss_dssp HHHHCSTTCEEEEEESSCTHHHHHHHHTT------------CEEEEEECCTTSSCCHHHHHHHHHHHCCSEEEEESSCTT
T ss_pred HHHhcCCCCEEEEcCCChHHHHHHHHHcC------------CEEEEecCCcCCCCCHHHHHHHhhccCCCEEEEeCCCCC
Confidence 67778999999999999999999888888 47778886543222211 221 13 7899999999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCc-ceEEEecccccccccccceeeeecccccc
Q 045431 218 TGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKE-VAIETSSFSKYAGFTGVRLGWTVIPKELL 296 (433)
Q Consensus 218 tG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~-~vi~i~S~sK~~~~~G~r~G~l~~~~~~~ 296 (433)
||.+++.+++++|++ .+++++|+||+|+++.++ .+...+....+ ++++++||||++|++|+|+||++++++++
T Consensus 177 tG~~~~~~~l~~l~~---~~~~~li~De~~~~~~~~---~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~ 250 (369)
T 3cq5_A 177 TGDVTSLDDVERIIN---VAPGIVIVDEAYAEFSPS---PSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANPAFI 250 (369)
T ss_dssp TCCCCCHHHHHHHHH---HCSSEEEEECTTGGGCCS---CCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEECTHHH
T ss_pred CCCCCCHHHHHHHHH---hCCCEEEEECCchhhcCC---cchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeCHHHH
Confidence 999999766666655 556999999999987653 22233212234 78999999999998999999999998774
Q ss_pred ccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEEC
Q 045431 297 FSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQF 376 (433)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~ 376 (433)
+.+..... ..+.+.+.|.++.+++++ .+++++.+++++++++.+.+.|++.|+.+.+ ..|+|+|+++
T Consensus 251 --------~~l~~~~~--~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~ 317 (369)
T 3cq5_A 251 --------DAVMLVRL--PYHLSALSQAAAIVALRH--SADTLGTVEKLSVERVRVAARLEELGYAVVP-SESNFVFFGD 317 (369)
T ss_dssp --------HHHHTTSC--TTCSCHHHHHHHHHHHHT--HHHHHTHHHHHHHHHHHHHHHHHHHTCEEEC-CSSSEEEEEC
T ss_pred --------HHHHHcCC--CCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCEECC-CCCeEEEEEC
Confidence 55543322 345789999998888874 3567889999999999999999988888874 5778999998
Q ss_pred CCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 377 PGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 377 ~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
+ .+..++...+. ++||.+.||. .++++||++. +++++++++++|+++++
T Consensus 318 ~-~~~~~l~~~l~-~~gi~v~~~~-----~~~~iRis~~-~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 318 F-SDQHAAWQAFL-DRGVLIRDVG-----IAGHLRTTIG-VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp C-SSHHHHHHHHH-HTTEECBCCS-----CTTEEEEECC-CHHHHHHHHHHHHHHHT
T ss_pred C-CCHHHHHHHHH-HCCEEEEECC-----CCCeEEEEeC-CHHHHHHHHHHHHHHHh
Confidence 7 45666776664 5699999981 2578999987 78999999999998763
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-40 Score=315.46 Aligned_cols=339 Identities=13% Similarity=0.104 Sum_probs=245.1
Q ss_pred ceEEecCCCC---C--CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc-cCCCCCCcEEEcCChHH
Q 045431 64 EVISLGIGDT---T--EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK-DLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 64 ~~i~l~~g~~---~--~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~-~~~~~~~~i~~~~G~~~ 137 (433)
+.|||++|.+ + .+..+.|.+|....+.. .....|.|..|.++||+++++++.+ .........+.|.|++.
T Consensus 45 ~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~----~~~~~Y~p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtg 120 (420)
T 4h51_A 45 PKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDM----NLDYEYLPISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTG 120 (420)
T ss_dssp SCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHT----TCCCCCCCTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHH
T ss_pred CCEEeecCcccCCCCCCCCCHHHHHHHHHHhcC----CCCCCCCCcCChHHHHHHHHHHhcCCCccccccceeeecCchH
Confidence 4799999954 1 23457788877666643 3335799999999999999999864 22112223345788887
Q ss_pred HHHH-H----HHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCC-------C-CCC
Q 045431 138 DISR-L----QIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDL-------S-TVA 204 (433)
Q Consensus 138 al~~-l----~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~ 204 (433)
++.. + ..++.|||+|++++|+|++|..+++.+|... +...+..++..+..+. + ..+
T Consensus 121 a~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~aG~~~-----------V~~~~~~~~~~~~~d~~~~~~~l~~~~~ 189 (420)
T 4h51_A 121 AVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKAAGWKN-----------ICTYAYYDPKTVSLNFEGMKKDILAAPD 189 (420)
T ss_dssp HHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHHTTCCC-----------EEEEECEEGGGTEECHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHHcCCeE-----------EEeeccccccccCCCHHHHHHHHhccCC
Confidence 7654 2 2335799999999999999999999999532 3233332222222221 1 135
Q ss_pred CccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC---CCcccccCCCCcceEEEecccccccc
Q 045431 205 RTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN---PRSIFEIPGAKEVAIETSSFSKYAGF 281 (433)
Q Consensus 205 ~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~---~~~~~~~~~~~~~vi~i~S~sK~~~~ 281 (433)
+++++++++||||||.+++.+++++|+++|+++++++|+|++|.+|.+++. ...+.......++++++.||||.+++
T Consensus 190 ~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~ 269 (420)
T 4h51_A 190 GSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGL 269 (420)
T ss_dssp SCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCC
T ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEecccccccc
Confidence 677777789999999999999999999999999999999999999988753 11222222234678999999999999
Q ss_pred cccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-----hHHHHHHHHHHHHHHHHHHHH
Q 045431 282 TGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-----KAVHEVIGFYKENTDIIVETF 356 (433)
Q Consensus 282 ~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~l~~~l 356 (433)
+|+|+||++++...... ..++...+..........++...|.++...+.+... .+++.++++++++|+.+.+.|
T Consensus 270 ~G~RvG~~~~~~~~~~~-~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L 348 (420)
T 4h51_A 270 YSERAGTLSLLLKDKTK-RADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDEL 348 (420)
T ss_dssp GGGCEEEEEEECSCHHH-HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCceEEEEecccCHHH-HHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988776411 011112233334455666888889888888875432 457888999999999999999
Q ss_pred hhcC----CeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc-ChhHHHHHHHHHHHh
Q 045431 357 NSLG----FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG-HRGNVLEACKRFKHL 431 (433)
Q Consensus 357 ~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~l~~~l~~l~~~ 431 (433)
+++| |.++.+++|+|.|+.++ .+.++ +++++||.+.||. |||++. +++.++.+.++|.++
T Consensus 349 ~~~g~~~~~~~i~~q~GmF~~~gls----~e~v~-~L~e~~Vy~~~~g----------Ris~Agl~~~ni~~~a~aI~~v 413 (420)
T 4h51_A 349 LRLQTPGSWEHVINQIGMFSFLGLS----KAQCE-YCQNHNIFITVSG----------RANMAGLTHETALMLAQTINDA 413 (420)
T ss_dssp HHTTCSSCCTHHHHCCSSEEECCCC----HHHHH-HHHHTTEECCTTC----------EEEGGGCCHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCCeecCCCceEEecCcC----HHHHH-HHHhCCEEEcCCC----------EEEeccCCHHHHHHHHHHHHHH
Confidence 9875 44456679999997764 23444 4567899998752 999865 999999999999988
Q ss_pred hC
Q 045431 432 YK 433 (433)
Q Consensus 432 l~ 433 (433)
++
T Consensus 414 vr 415 (420)
T 4h51_A 414 VR 415 (420)
T ss_dssp HC
T ss_pred HH
Confidence 74
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-40 Score=319.04 Aligned_cols=336 Identities=15% Similarity=0.156 Sum_probs=253.8
Q ss_pred CCceEEecCCCC---C--CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEE--cCC
Q 045431 62 DAEVISLGIGDT---T--EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFV--SDG 134 (433)
Q Consensus 62 ~~~~i~l~~g~~---~--~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~--~~G 134 (433)
++++|+|+.|.+ + .++++.+.+++.+.+.. .....|++..|..+||+++++++.. .++++++|++ |+|
T Consensus 25 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~----~~~~~y~~~~g~~~lr~~la~~~~~-~~~~~~~v~~~~~~g 99 (394)
T 2ay1_A 25 RQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLET----ETTKTYAGLSGEPEFQKAMGELILG-DGLKSETTATLATVG 99 (394)
T ss_dssp CTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHH----CCCCCCCCSSCCHHHHHHHHHHHHG-GGCCGGGEEEEEEEH
T ss_pred CccccccccceeeCCCCCccCcHHHHHHHHHhcCC----cccCCCCCCCCcHHHHHHHHHHHhC-CCCCcccEEEEecCC
Confidence 456899999985 2 25678999999887754 2456898888999999999999843 1237889999 999
Q ss_pred hHHHHHHH-HHh--cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-------C-
Q 045431 135 AKCDISRL-QIV--FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-------V- 203 (433)
Q Consensus 135 ~~~al~~l-~~l--~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~- 203 (433)
+++++.++ ..+ +.+||+|++++|+|+++...++..| .+++.++.+.++++..+++. .
T Consensus 100 ~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~l~~~~ 167 (394)
T 2ay1_A 100 GTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMG------------LPVQTYRYFDAETRGVDFEGMKADLAAAK 167 (394)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHT------------CCEEEEECEETTTTEECHHHHHHHHHTCC
T ss_pred chhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcC------------CceEEEecccccCCccCHHHHHHHHHhCC
Confidence 99999974 444 3499999999999999999999888 46777777432222223221 1
Q ss_pred CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC--CCCcccccCCCCcceEEEecccccccc
Q 045431 204 ARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDD--NPRSIFEIPGAKEVAIETSSFSKYAGF 281 (433)
Q Consensus 204 ~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~--~~~~~~~~~~~~~~vi~i~S~sK~~~~ 281 (433)
++++++++++||||||.++|.+++++|+++|++||+++|+||+|+++.+++ ...++..+....+++++++||||.+|+
T Consensus 168 ~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 247 (394)
T 2ay1_A 168 KGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGI 247 (394)
T ss_dssp TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTC
T ss_pred CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcC
Confidence 235666668999999999999999999999999999999999999887653 122333332223568999999999999
Q ss_pred cccceeeeec---cccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCC-----hhHHHHHHHHHHHHHHHHH
Q 045431 282 TGVRLGWTVI---PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEG-----FKAVHEVIGFYKENTDIIV 353 (433)
Q Consensus 282 ~G~r~G~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~ 353 (433)
+|+|+||+++ +++++. .+...+.......+.+++.++|.++.+++++.. .+++++++++++++++.+.
T Consensus 248 ~G~riG~~~~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 323 (394)
T 2ay1_A 248 YRERTGCLLALCADAATRE----LAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLA 323 (394)
T ss_dssp GGGCEEEEEEECSSHHHHH----HHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccceEEEEeCCHHHHH----HHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998 454320 011223322333444568899998888887541 2468899999999999999
Q ss_pred HHHhhcC----CeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc-ChhHHHHHHHHH
Q 045431 354 ETFNSLG----FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG-HRGNVLEACKRF 428 (433)
Q Consensus 354 ~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~l~~~l~~l 428 (433)
+.|++++ +.+..+.+|+|+|++++ . +.+..+++++||.+.|| +||++.. +++++++++++|
T Consensus 324 ~~L~~~~~~~~~~~~~~~~g~~~~~~~~---~-~~~~~~l~~~gi~v~~~----------~Ris~~~~~~~~i~~~~~~l 389 (394)
T 2ay1_A 324 GELRDLSGSDRFGFVAEHRGMFSRLGAT---P-EQVKRIKEEFGIYMVGD----------SRINIAGLNDNTIPILARAI 389 (394)
T ss_dssp HHHHHHHTSSTTTHHHHCCSSEEECCCC---H-HHHHHHHHHHCEECCTT----------CEEEGGGCCTTTHHHHHHHH
T ss_pred HHHHhcCCCCCeeEEcCCceEEEeeCCC---H-HHHHHHHHhCCEEecCC----------CeEEeecCCHhhHHHHHHHH
Confidence 9998874 77777778999998875 2 34566666779999874 6999854 899999999999
Q ss_pred HHhh
Q 045431 429 KHLY 432 (433)
Q Consensus 429 ~~~l 432 (433)
+++.
T Consensus 390 ~~~~ 393 (394)
T 2ay1_A 390 IEVG 393 (394)
T ss_dssp HHHT
T ss_pred HHcc
Confidence 8763
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-38 Score=306.97 Aligned_cols=337 Identities=15% Similarity=0.149 Sum_probs=255.2
Q ss_pred CCceEEecCCCC-CCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHH
Q 045431 62 DAEVISLGIGDT-TEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDIS 140 (433)
Q Consensus 62 ~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~ 140 (433)
+..+|+|+.|.+ ++++++.+.+++.+.+.... .....|....|..++++++++++.+.++. +++++|+|+++++.
T Consensus 42 g~~~idl~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~g~~~~~~~l~~~la~~~g~--~~v~~~~ggt~a~~ 117 (398)
T 3a2b_A 42 GRRVLMFGSNSYLGLTTDTRIIKAAQDALEKYG--TGCAGSRFLNGTLDIHVELEEKLSAYVGK--EAAILFSTGFQSNL 117 (398)
T ss_dssp TEEEEECSCSCTTCGGGCHHHHHHHHHHHHHHC--SCCCSBTTTTCCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHH
T ss_pred CceEEEeecccccCCCCCHHHHHHHHHHHHHcC--CCCCCcCcccCCcHHHHHHHHHHHHHhCC--CcEEEECCHHHHHH
Confidence 456899999988 66688999999999887543 33456666778889999999998764454 58999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCC--CCccEEEEcCCCCc
Q 045431 141 R-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV--ARTDIIFFCSPNNP 217 (433)
Q Consensus 141 ~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~p~nP 217 (433)
+ +..++++||.|++++|+|+.+...++..| .+++.++..+...+...+... .++++|++++|+||
T Consensus 118 ~~~~~~~~~gd~V~~~~p~~~~~~~~~~~~g------------~~~~~v~~~d~~~l~~~l~~~~~~~~~~v~~~~~~np 185 (398)
T 3a2b_A 118 GPLSCLMGRNDYILLDERDHASIIDGSRLSF------------SKVIKYGHNNMEDLRAKLSRLPEDSAKLICTDGIFSM 185 (398)
T ss_dssp HHHHHSSCTTCEEEEETTCCHHHHHHHHHSS------------SEEEEECTTCHHHHHHHHHTSCSSSCEEEEEESBCTT
T ss_pred HHHHHHhCCCCEEEECCccCHHHHHHHHHcC------------CceEEeCCCCHHHHHHHHHhhccCCceEEEEeCCCCC
Confidence 7 57778999999999999999999998888 467777752211111111111 16889999999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcc-eEEEecccccccccccceeeeecccccc
Q 045431 218 TGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEV-AIETSSFSKYAGFTGVRLGWTVIPKELL 296 (433)
Q Consensus 218 tG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~-vi~i~S~sK~~~~~G~r~G~l~~~~~~~ 296 (433)
||.+++ +++|.++|++||++||+||+|+.+.++..+.++.+..+..++ +++++||||+++++| ||++++++++
T Consensus 186 tG~~~~---~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G---G~~~~~~~~~ 259 (398)
T 3a2b_A 186 EGDIVN---LPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLASLG---GFVAGDADVI 259 (398)
T ss_dssp TCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSSC---EEEEECHHHH
T ss_pred CCCccC---HHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEecccccccCCC---cEEEeCHHHH
Confidence 999998 899999999999999999999987664322333332222345 599999999999768 9999998775
Q ss_pred ccCCcchhHHHHHH-HhhccCCCcHHHHH-HHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEE
Q 045431 297 FSDGFPVAKDFNRI-VCTCFNGASNISQA-GGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWV 374 (433)
Q Consensus 297 ~~~~~~~~~~~~~~-~~~~~~~~~~~~q~-~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~ 374 (433)
+.+... ......+.+.+.|. ++.++++. .+++++++++++++++.+.+.|+++|+.+..+ .|+++|+
T Consensus 260 --------~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~g~~~~~ 328 (398)
T 3a2b_A 260 --------DFLKHNARSVMFSASMTPASVASTLKALEI--IQNEPEHIEKLWKNTDYAKAQLLDHGFDLGAT-ESPILPI 328 (398)
T ss_dssp --------HHHHHHCHHHHSSBCCCHHHHHHHHHHHHH--HHHCTHHHHHHHHHHHHHHHHHHHTTCCBCSC-CSSEEEE
T ss_pred --------HHHHHhcccceecCCCCHHHHHHHHHHHHH--HhhCHHHHHHHHHHHHHHHHHHHhcCCCcCCC-CCCEEEE
Confidence 555543 22233334555665 45566653 24457888999999999999999988887765 5799999
Q ss_pred ECCC-CChHHHHHHHHHcCCeEecCCCCCCC-CCCCeEEEeecc--ChhHHHHHHHHHHHhh
Q 045431 375 QFPG-RSSWDVFSEILEKTHVVTTPGSGFGP-GGEGFIRVSAFG--HRGNVLEACKRFKHLY 432 (433)
Q Consensus 375 ~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~~-~~~~~iRi~~~~--~~~~l~~~l~~l~~~l 432 (433)
.++. .+..++...++++ ||.+.||..|.. .+++++||++.. +++++++++++|++++
T Consensus 329 ~~~~~~~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l 389 (398)
T 3a2b_A 329 FIRSNEKTFWVTKMLQDD-GVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVF 389 (398)
T ss_dssp ECCCHHHHHHHHHHHHHT-TEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred EcCCHHHHHHHHHHHHHC-CcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 9973 3455677777666 999999988753 246799999864 8999999999999875
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=287.86 Aligned_cols=338 Identities=17% Similarity=0.151 Sum_probs=245.3
Q ss_pred CCCceEEecCCCC-CCCChHHHHHHHHHHHhhcccCCCCCC--CCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHH
Q 045431 61 PDAEVISLGIGDT-TEPIPEVITSALAKRSYALSTQEGYSG--YGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 61 ~~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~--Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~ 137 (433)
++..+|||+.+.| +++.++.+.+++.+.+.+......... |+...+..++++.+++++ +.+ ++|++++|+ +
T Consensus 41 ~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----~~~-~~i~~~sGt-~ 114 (399)
T 3tqx_A 41 GEKEVLNFCANNYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFL----GTD-DTILYSSCF-D 114 (399)
T ss_dssp TTEEEEECSSCCTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHH----TCS-EEEEESCHH-H
T ss_pred CCeeEEEeeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHH----CCC-cEEEECchH-H
Confidence 3456899999976 335689999999998876542112222 333445789999999987 554 677787774 5
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCC----CCccEEEEc
Q 045431 138 DISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV----ARTDIIFFC 212 (433)
Q Consensus 138 al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~l~ 212 (433)
++.+ +..++++||.|++++|+|+.+...++..| .+++.++..+...+...+... .++++|+++
T Consensus 115 a~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~~~g------------~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~ 182 (399)
T 3tqx_A 115 ANGGLFETLLGPEDAIISDELNHASIIDGIRLCK------------AQRYRYKNNAMGDLEAKLKEADEKGARFKLIATD 182 (399)
T ss_dssp HHHTTHHHHCCTTCEEEEETTCCHHHHHHHHSCC------------SEEEEECTTCTTHHHHHHHHHHTTTCSSEEEEEE
T ss_pred HHHHHHHHhcCCCCEEEECCcccHHHHHHHHHcC------------CceeEeCCCCHHHHHHHHHhhhccCCCceEEEEe
Confidence 7665 67889999999999999999999888888 467777753221111111111 278999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCC-CCcceEEEecccccccccccceeeeec
Q 045431 213 SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPG-AKEVAIETSSFSKYAGFTGVRLGWTVI 291 (433)
Q Consensus 213 ~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~-~~~~vi~i~S~sK~~~~~G~r~G~l~~ 291 (433)
+|+||||.+++ +++|+++|++||+++|+||+|+...+.....++.+..+ ..+.+++++||||+++ |++.||+++
T Consensus 183 ~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~--g~~gG~~~~ 257 (399)
T 3tqx_A 183 GVFSMDGIIAD---LKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALG--GASGGYTSG 257 (399)
T ss_dssp SEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSC--SSCCEEEEE
T ss_pred CCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcc--cCceEEEEc
Confidence 99999999999 88999999999999999999974333322223333222 1345699999999997 455599999
Q ss_pred cccccccCCcchhHHHHHHHh--hccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCc
Q 045431 292 PKELLFSDGFPVAKDFNRIVC--TCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNA 369 (433)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g 369 (433)
+++++ +.+..... ......+.+.+.++.+.++... +++++.+++++++++.+.+.|+++|+.+.+ ..+
T Consensus 258 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~ 327 (399)
T 3tqx_A 258 HKEII--------EWLRNRSRPYLFSNTVAPVIVATSLKVLELLK-TEGPQLRKQLQENSRYFRAGMEKLGFQLVP-GNH 327 (399)
T ss_dssp CHHHH--------HHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHHTCCBCC-CSS
T ss_pred CHHHH--------HHHHHhCcceeccCCCcHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHcCCCcCC-CCC
Confidence 98875 55544321 1233467777777777766321 457899999999999999999999988874 477
Q ss_pred cEEEEECCCC-ChHHHHHHHHHcCCeEecCCCCCC-CCCCCeEEEeec--cChhHHHHHHHHHHHhh
Q 045431 370 PYVWVQFPGR-SSWDVFSEILEKTHVVTTPGSGFG-PGGEGFIRVSAF--GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 370 ~~~~~~~~~~-~~~~~~~~l~~~~gi~v~~g~~f~-~~~~~~iRi~~~--~~~~~l~~~l~~l~~~l 432 (433)
.++|+.++.. +..++...+++ +||.+.|+..+. +.+++++||++. .+++++++++++|++++
T Consensus 328 ~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 393 (399)
T 3tqx_A 328 PIIPVMLGDAQLATNMADHLLQ-EGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQVG 393 (399)
T ss_dssp SEEEEEEECHHHHHHHHHHHHH-TTEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHH-CCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHHHH
Confidence 8899988743 45567777666 599999876543 345679999974 68999999999999875
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-35 Score=280.60 Aligned_cols=334 Identities=10% Similarity=0.067 Sum_probs=241.7
Q ss_pred CCceEEecCCCC-CCCChHHHHHHHHHHHhhcccCCCCCCC--CCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHH
Q 045431 62 DAEVISLGIGDT-TEPIPEVITSALAKRSYALSTQEGYSGY--GAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCD 138 (433)
Q Consensus 62 ~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~Y--~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~a 138 (433)
+..+|||+.+.+ ++++++.+.+++.+.+...........| +...+..+||+++++++ +++ ++|++++| +++
T Consensus 38 g~~~id~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g~~-~~i~~~sG-t~a 111 (384)
T 1bs0_A 38 DRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWL----GYS-RALLFISG-FAA 111 (384)
T ss_dssp TEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH----TCS-EEEEESCH-HHH
T ss_pred CceEEEeeccCccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHh----CCC-cEEEeCCc-HHH
Confidence 456899999985 5567889999999988764321112233 45578899999999998 664 67777777 677
Q ss_pred HHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCC-CCccEEEEcCCCC
Q 045431 139 ISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV-ARTDIIFFCSPNN 216 (433)
Q Consensus 139 l~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~p~n 216 (433)
+.+ +..++++||.|++++|+|+.+...++..| .+++.++..+...+...+... ++++++++++|||
T Consensus 112 ~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g------------~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~~~n 179 (384)
T 1bs0_A 112 NQAVIAAMMAKEDRIAADRLSHASLLEAASLSP------------SQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFS 179 (384)
T ss_dssp HHHHHHHHCCTTCEEEEETTCCHHHHHHHHTSS------------SEEEEECTTCHHHHHHHHHSCCSSCEEEEEESBCT
T ss_pred HHHHHHHhCCCCcEEEEcccccHHHHHHHHHcC------------CCEEEeCCCCHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 775 67778999999999999999998888887 367777653211111112221 2367788889999
Q ss_pred ccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcc-cccCCCCcceEEEecccccccccccceeeeeccccc
Q 045431 217 PTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSI-FEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKEL 295 (433)
Q Consensus 217 PtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~ 295 (433)
|||.+++ +++|.++|++||++||+||+|+.+.+.....++ ..++. +..++++||||+++++| ||+++++++
T Consensus 180 ptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~--~~di~~~s~sK~~~~~G---G~~~~~~~~ 251 (384)
T 1bs0_A 180 MDGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKV--KPELLVVTFGKGFGVSG---AAVLCSSTV 251 (384)
T ss_dssp TTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTC--CCSEEEEESSSTTSSCC---EEEEECHHH
T ss_pred CCCCccC---HHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCC--CCcEEEeeccchhhccC---cEEEeCHHH
Confidence 9999999 789999999999999999999875543111112 12221 12389999999998666 999998877
Q ss_pred cccCCcchhHHHHHHH--hhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEE
Q 045431 296 LFSDGFPVAKDFNRIV--CTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVW 373 (433)
Q Consensus 296 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~ 373 (433)
+ +.+.... .......+.+.+.++.++++.....+.++.+++++++++.+.+.|+++|+++.+ ..++++|
T Consensus 252 ~--------~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~ 322 (384)
T 1bs0_A 252 A--------DYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLAD-SCSAIQP 322 (384)
T ss_dssp H--------HHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSCEECS-CCSSBCC
T ss_pred H--------HHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcCCcccC-CCCCEEE
Confidence 5 4444321 112224778888877777753211156788899999999999999998888764 5778888
Q ss_pred EECCC-CChHHHHHHHHHcCCeEecCCCCCC-CCCCCeEEEeecc--ChhHHHHHHHHHHHh
Q 045431 374 VQFPG-RSSWDVFSEILEKTHVVTTPGSGFG-PGGEGFIRVSAFG--HRGNVLEACKRFKHL 431 (433)
Q Consensus 374 ~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~-~~~~~~iRi~~~~--~~~~l~~~l~~l~~~ 431 (433)
+.++. .+..++...+.++ ||.+.||..|+ +.+.+++||++.. +++++++++++|+++
T Consensus 323 ~~~~~~~~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 323 LIVGDNSRALQLAEKLRQQ-GCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp EEEESHHHHHHHHHHHHHT-TEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHC-CcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 88863 2355666676655 99999998775 2345789999753 899999999999875
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-34 Score=279.50 Aligned_cols=335 Identities=15% Similarity=0.169 Sum_probs=240.5
Q ss_pred CCCceEEecCCCC-CCCChHHHHHHHHHHHhhcccCCCCCCCCCCCC----CHHHHHHHHHHHhccCCCCCCcEEEcCCh
Q 045431 61 PDAEVISLGIGDT-TEPIPEVITSALAKRSYALSTQEGYSGYGAEQG----EKPLRAAIASTFYKDLGIEEGDIFVSDGA 135 (433)
Q Consensus 61 ~~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g----~~~lr~~la~~l~~~~~~~~~~i~~~~G~ 135 (433)
++..+|||+.|++ +++.++.+.+++.+++.++. .+...|....| ..+|++.+++++ +.+ +.+++++|+
T Consensus 62 ~g~~~id~~~~~~lg~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~G~~~~~~~l~~~la~~~----g~~-~~i~~~sGs 134 (427)
T 2w8t_A 62 RGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFG--SGTCGSRMLNGTFHDHMEVEQALRDFY----GTT-GAIVFSTGY 134 (427)
T ss_dssp TTEEEEECSCCCTTCGGGCHHHHHHHHHHHHHHC--SCCCSCTTTTCCCHHHHHHHHHHHHHH----TCS-EEEEESCHH
T ss_pred CCceEEEEECcccccCCCCHHHHHHHHHHHHHhC--CCCcccccccCCcHHHHHHHHHHHHHh----CCC-ceEEecCcH
Confidence 4567899999986 44678899999999987643 12223323334 478888888887 553 566666666
Q ss_pred HHHHH-HHHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCC-C-CccEEEEc
Q 045431 136 KCDIS-RLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV-A-RTDIIFFC 212 (433)
Q Consensus 136 ~~al~-~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~i~l~ 212 (433)
. ++. ++..++++||.|+++.|+|+++...++..| .+++.++..+...+...+... + ++++|+++
T Consensus 135 ~-a~~~al~~l~~~gd~vl~~~~~h~~~~~~~~~~g------------~~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~ 201 (427)
T 2w8t_A 135 M-ANLGIISTLAGKGEYVILDADSHASIYDGCQQGN------------AEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLE 201 (427)
T ss_dssp H-HHHHHHHHHSCTTCEEEEETTCCHHHHHHHHHSC------------SEEEEECTTCHHHHHHHHHTSCSSSCEEEEEE
T ss_pred H-HHHHHHHHhcCCCCEEEECCcccHHHHHHHHHcC------------CeeEEeCCCCHHHHHHHHHhccCCCCeEEEEc
Confidence 5 555 467788999999999999999999888888 366666643211111111111 1 68899999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccc-cCCCCcceEEEecccccccccccceeeeec
Q 045431 213 SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFE-IPGAKEVAIETSSFSKYAGFTGVRLGWTVI 291 (433)
Q Consensus 213 ~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~-~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~ 291 (433)
+|+||||.+++ +++|.++|++||+++|+||+|+.+.++....++.+ ++-.++.+++++||||++|++| ||+++
T Consensus 202 ~~~n~tG~~~~---l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~g~~g---G~v~~ 275 (427)
T 2w8t_A 202 GVYSMLGDIAP---LKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVGTVG---GFVVS 275 (427)
T ss_dssp SEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSCC---EEEEE
T ss_pred CCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhhccCC---CEEEe
Confidence 99999999998 88999999999999999999998766533333333 2212345799999999998777 99999
Q ss_pred cccccccCCcchhHHHHHH-H-hhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCC-C
Q 045431 292 PKELLFSDGFPVAKDFNRI-V-CTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGK-N 368 (433)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~ 368 (433)
+++++ +.+... . .....+.+++.+.++.+.++.. +++++++++++++++++.+.|+++|+.+..+. .
T Consensus 276 ~~~l~--------~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 345 (427)
T 2w8t_A 276 NHPKF--------EAVRLACRPYIFTASLPPSVVATATTSIRKL--MTAHEKRERLWSNARALHGGLKAMGFRLGTETCD 345 (427)
T ss_dssp CCTTG--------GGGGGTCHHHHSSCCCCHHHHHHHHHHHHHH--TSCHHHHHHHHHHHHHHHHHHHHHTCEESCSSCC
T ss_pred CHHHH--------HHHHHhcccccccCCCCHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHcCCcccCCCCC
Confidence 98875 333221 1 1122345666666655666532 12477889999999999999998888887334 6
Q ss_pred ccEEEEECCC-CChHHHHHHHHHcCCeEecCCCCCCC-CCCCeEEEeec--cChhHHHHHHHHHHHhh
Q 045431 369 APYVWVQFPG-RSSWDVFSEILEKTHVVTTPGSGFGP-GGEGFIRVSAF--GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 369 g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~~-~~~~~iRi~~~--~~~~~l~~~l~~l~~~l 432 (433)
+.++|+.++. ....++...|+++ ||.+.|+..|+. .+.+++||++. .+++++++++++|++++
T Consensus 346 ~~~~~~~~~~~~~~~~l~~~L~~~-Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l 412 (427)
T 2w8t_A 346 SAIVAVMLEDQEQAAMMWQALLDG-GLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAG 412 (427)
T ss_dssp SSEEEEEESSHHHHHHHHHHHHHT-TEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHC-CeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 7889999874 2345666776665 999999987753 34578999975 48999999999998875
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-34 Score=278.82 Aligned_cols=339 Identities=13% Similarity=0.102 Sum_probs=240.8
Q ss_pred CCceEEecCCCC-CCCChHHHHHHHHHHHhhcccCCC--CCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHH
Q 045431 62 DAEVISLGIGDT-TEPIPEVITSALAKRSYALSTQEG--YSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCD 138 (433)
Q Consensus 62 ~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~~~~~~--~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~a 138 (433)
+.+++++..+++ +++.++.+.+++.+.+.+...... ...|+...+..++|+++|+++ +. +++|++|+|++ +
T Consensus 45 g~~~i~~~~~~~~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----~~-~~~i~~~sG~~-a 118 (401)
T 2bwn_A 45 KQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLH----QK-EAALVFSSAYN-A 118 (401)
T ss_dssp EEEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHT----TC-SEEEEESCHHH-H
T ss_pred CCcEEEeeCCCcccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHh----CC-CcEEEECCcHH-H
Confidence 345789888776 455567899999999876432111 224555668899999999997 54 58899999988 4
Q ss_pred HHH-HHHhc--CCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-C-CCccEEEEcC
Q 045431 139 ISR-LQIVF--GSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-V-ARTDIIFFCS 213 (433)
Q Consensus 139 l~~-l~~l~--~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~i~l~~ 213 (433)
+.. +..++ .+||.|++++|+|+++...++..| .+++.++.++...+...+.. . +++++|++++
T Consensus 119 ~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~d~~~le~~l~~~~~~~~~~v~~~~ 186 (401)
T 2bwn_A 119 NDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNA------------GPKRIFRHNDVAHLRELIAADDPAAPKLIAFES 186 (401)
T ss_dssp HHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSC------------CCEEEECTTCHHHHHHHHHHSCTTSCEEEEEES
T ss_pred HHHHHHHHhcCCCCCEEEECchhhHHHHHHHHHcC------------CeEEEEcCCCHHHHHHHHHhhccCCceEEEEec
Confidence 444 34333 599999999999999998888877 46777776421111111111 1 4788999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCC-CcceEEEecccccccccccceeeeecc
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGA-KEVAIETSSFSKYAGFTGVRLGWTVIP 292 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~-~~~vi~i~S~sK~~~~~G~r~G~l~~~ 292 (433)
|+||||.+++ +++|.++|++||+++|+||+|+...+.....++....+. .+.+++++||||++|++| ||++++
T Consensus 187 ~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~G---G~~~~~ 260 (401)
T 2bwn_A 187 VYSMDGDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG---GYIAAS 260 (401)
T ss_dssp BCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC---EEEEEC
T ss_pred CcCCCCCcCC---HHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccCCC---CEEecC
Confidence 9999999999 789999999999999999999954443222222211111 234689999999999888 999998
Q ss_pred ccccccCCcchhHHHHHHHh--hccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCcc
Q 045431 293 KELLFSDGFPVAKDFNRIVC--TCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAP 370 (433)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~ 370 (433)
++++ +.+..... ....+.+.+.+.++.++++......+++++++++++++++.+.|++.|+.+.++. +.
T Consensus 261 ~~~~--------~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~ 331 (401)
T 2bwn_A 261 ARMV--------DAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIIDHG-SH 331 (401)
T ss_dssp HHHH--------HHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCS-SS
T ss_pred HHHH--------HHHHHhCcCceecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHCCCcccCCC-CC
Confidence 7764 44433211 1122345577776666665322223578889999999999999998888877664 45
Q ss_pred EEEEECCC-CChHHHHHHHHHcCCeEecCCCCCCCC-CCCeEEEeec--cChhHHHHHHHHHHHhhC
Q 045431 371 YVWVQFPG-RSSWDVFSEILEKTHVVTTPGSGFGPG-GEGFIRVSAF--GHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 371 ~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~~~-~~~~iRi~~~--~~~~~l~~~l~~l~~~l~ 433 (433)
++|+.++. .+..++...+++++||.+.|+..|+.. +.+++|+++. .+++++++++++|+++++
T Consensus 332 ~~~~~~~~~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~ 398 (401)
T 2bwn_A 332 IVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWA 398 (401)
T ss_dssp CEEEECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC-
T ss_pred eEEEEeCChHHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Confidence 89999874 344566667765669999998877533 4468999975 589999999999998753
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-34 Score=272.59 Aligned_cols=332 Identities=16% Similarity=0.161 Sum_probs=237.3
Q ss_pred EEecCCCCCCCChHHHHHHHHHHHhhcc-cCCCCC--CCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-
Q 045431 66 ISLGIGDTTEPIPEVITSALAKRSYALS-TQEGYS--GYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR- 141 (433)
Q Consensus 66 i~l~~g~~~~~~~~~~~~a~~~~~~~~~-~~~~~~--~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~- 141 (433)
+.|+.+... ++|+.+.+++.+.+.+.. +..... .|....+..++++++++++ ++++++|++|+|+++++.+
T Consensus 3 ~yld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g~~~~~v~~~~g~t~a~~~~ 77 (384)
T 1eg5_A 3 VYFDNNATT-RVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVL----GVSPSEIFFTSCATESINWI 77 (384)
T ss_dssp EECBTTTCC-CCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHH----TSCGGGEEEESCHHHHHHHH
T ss_pred EEEecCccC-CCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHc----CCCCCeEEEECCHHHHHHHH
Confidence 556666654 788999999999886421 101111 2333456789999999998 7888999999999999997
Q ss_pred HHHhc----CCCCEEEEeCCCChhhhhhH---HHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEEEE
Q 045431 142 LQIVF----GSNVTMAVQDPSYPAYVDSS---VIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIFF 211 (433)
Q Consensus 142 l~~l~----~~gd~Vl~~~p~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l 211 (433)
+..++ ++||+|++++|+|+++...+ +..| .+++.++.+.+..++.+ +++ .+++++|++
T Consensus 78 ~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~ 145 (384)
T 1eg5_A 78 LKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKG------------FKVKYVPVDSRGVVKLEELEKLVDEDTFLVSI 145 (384)
T ss_dssp HHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTT------------CEEEECCBCTTSCBCHHHHHHHCCTTEEEEEE
T ss_pred HHhhhhhccCCCCEEEECCCCchHHHHHHHHHHhcC------------CEEEEEccCCCCccCHHHHHHHhCCCCeEEEE
Confidence 56665 79999999999999887666 4556 47788887643222221 221 257899999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcC--CEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeee
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKDNG--SIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWT 289 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~~~--~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l 289 (433)
++|+||||.+++ +++|.++|++|| ++||+||+|+ + ...+.++..+ +.++++.|+||++|++| +||+
T Consensus 146 ~~~~nptG~~~~---~~~i~~l~~~~~~~~~li~Dea~~-~--~~~~~~~~~~----~~di~~~s~sK~~g~~G--~G~~ 213 (384)
T 1eg5_A 146 MAANNEVGTIQP---VEDVTRIVKKKNKETLVHVDAVQT-I--GKIPFSLEKL----EVDYASFSAHKFHGPKG--VGIT 213 (384)
T ss_dssp ESBCTTTCBBCC---HHHHHHHHHHHCTTCEEEEECTTT-T--TTSCCCCTTT----CCSEEEEEGGGGTSCTT--CEEE
T ss_pred ECCCCCcccccC---HHHHHHHHHhcCCceEEEEEhhhh-c--CCcccCchhc----CCCEEEecHHHhcCCCc--eEEE
Confidence 999999999999 688999999999 9999999998 2 2122233222 34689999999998778 7999
Q ss_pred eccccc-cccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCC-
Q 045431 290 VIPKEL-LFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGK- 367 (433)
Q Consensus 290 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~- 367 (433)
++++++ +.... ..............+.+.|.++.++++.. .+++++.+++++++++.+.+.|++.|+.+..+.
T Consensus 214 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~a~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 288 (384)
T 1eg5_A 214 YIRKGVPIRPLI----HGGGQERGLRSGTQNVPGIVGAARAMEIA-VEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLE 288 (384)
T ss_dssp EECTTSCCCCSB----CSSCTTTTTBCSCCCHHHHHHHHHHHHHH-HHTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTT
T ss_pred EEcCCCcccccc----ccCcccccccCCCCChHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHhCCCCeEEeCCcc
Confidence 999875 21100 00000011233457888888888777642 246788999999999999999998888876553
Q ss_pred --CccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCC-----------------CCCeEEEeec--cChhHHHHHHH
Q 045431 368 --NAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPG-----------------GEGFIRVSAF--GHRGNVLEACK 426 (433)
Q Consensus 368 --~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~-----------------~~~~iRi~~~--~~~~~l~~~l~ 426 (433)
.+.++++.+++.+..++...+. ++||.+.+|..|+.. ..+++||++. .++++++++++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~ 367 (384)
T 1eg5_A 289 ISLPNTLSVSFPNIRGSTLQNLLS-GYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLK 367 (384)
T ss_dssp SBCTTEEEEECTTCCHHHHHHHHH-HTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHH
T ss_pred cCCCCEEEEEeCCCCHHHHHHHHh-hCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHH
Confidence 2457888887656667776664 569999999877532 1478999986 68999999999
Q ss_pred HHHHhh
Q 045431 427 RFKHLY 432 (433)
Q Consensus 427 ~l~~~l 432 (433)
+|++++
T Consensus 368 ~l~~~~ 373 (384)
T 1eg5_A 368 KIEEIL 373 (384)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-35 Score=281.74 Aligned_cols=333 Identities=15% Similarity=0.143 Sum_probs=241.4
Q ss_pred CCCceEEecCCCCCCC--ChHHHHHHHHHHHhhcccCCCCCCC--CCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChH
Q 045431 61 PDAEVISLGIGDTTEP--IPEVITSALAKRSYALSTQEGYSGY--GAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAK 136 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~Y--~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~ 136 (433)
++...|||+.+.+ ++ .++.+.+++.+.+..+........| +...+..+||+++++++ +++ ++|++++|+.
T Consensus 43 ~g~~~id~~~~~~-~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g~~-~~i~~~sGs~ 116 (401)
T 1fc4_A 43 DGSHVINFCANNY-LGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFL----GME-DAILYSSCFD 116 (401)
T ss_dssp TSCEEEECCCSCT-TSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHH----TCS-EEEEESCHHH
T ss_pred CCccEEEeeccCc-ccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHh----CCC-cEEEeCChHH
Confidence 4567899999965 43 5899999999988764321111223 22567899999999998 666 7787877755
Q ss_pred HHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCC-C---CccEEEE
Q 045431 137 CDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV-A---RTDIIFF 211 (433)
Q Consensus 137 ~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~i~l 211 (433)
++.+ +..++++||.|+++.|+|+.+...++..| .+++.++..+...+...+... + ++++|++
T Consensus 117 -a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g------------~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~ 183 (401)
T 1fc4_A 117 -ANGGLFETLLGAEDAIISDALNHASIIDGVRLCK------------AKRYRYANNDMQELEARLKEAREAGARHVLIAT 183 (401)
T ss_dssp -HHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTSC------------SEEEEECTTCHHHHHHHHHHHHHTTCSSEEEEE
T ss_pred -HHHHHHHHHcCCCCEEEEcchhHHHHHHHHHHcC------------CceEEECCCCHHHHHHHHHHhhccCCCceEEEE
Confidence 6665 67788999999999999988887777777 366666642111111111111 1 6889999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCCEEEEecccc-cccc-CCCC-CcccccCCCCcceEEEecccccc-ccccccee
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYA-LYIS-DDNP-RSIFEIPGAKEVAIETSSFSKYA-GFTGVRLG 287 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~-~~~~-~~~~-~~~~~~~~~~~~vi~i~S~sK~~-~~~G~r~G 287 (433)
++||||||.+++ +++|.++|++||+++|+||+|+ ++.. .+.+ .+...+. ++.+++++||||++ |.+| |
T Consensus 184 ~~~~nptG~~~~---~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~--~~~di~~~s~sK~~~~~~g---G 255 (401)
T 1fc4_A 184 DGVFSMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVM--GRVDIITGTLGKALGGASG---G 255 (401)
T ss_dssp ESEETTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCT--TCCSEEEEESSSTTCSSSC---E
T ss_pred eCCcCCCCCCCC---HHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCC--cCCcEEEecchhhccCCCC---E
Confidence 999999999999 8999999999999999999996 6653 3322 1112222 24569999999999 5444 9
Q ss_pred eeeccccccccCCcchhHHHHHHH--hhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeec
Q 045431 288 WTVIPKELLFSDGFPVAKDFNRIV--CTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYG 365 (433)
Q Consensus 288 ~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~ 365 (433)
|++++++++ +.+.... .....+.+.+.|.++.+.++.. ...++.+++++++++++.+.|+++|+.+.
T Consensus 256 ~~~~~~~~~--------~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~- 324 (401)
T 1fc4_A 256 YTAARKEVV--------EWLRQRSRPYLFSNSLAPAIVAASIKVLEMV--EAGSELRDRLWANARQFREQMSAAGFTLA- 324 (401)
T ss_dssp EEEECHHHH--------HHHHHHCHHHHHSCCCCHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHHHTTCCBC-
T ss_pred EEEcCHHHH--------HHHHHhCcCceeCCCCCHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHcCCccc-
Confidence 999988774 5554432 1123457888898888777632 11367888999999999999999888877
Q ss_pred CCCccEEEEECCC-CChHHHHHHHHHcCCeEecCCCCCCCC-CCCeEEEeec--cChhHHHHHHHHHHHhh
Q 045431 366 GKNAPYVWVQFPG-RSSWDVFSEILEKTHVVTTPGSGFGPG-GEGFIRVSAF--GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 366 ~~~g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~~~-~~~~iRi~~~--~~~~~l~~~l~~l~~~l 432 (433)
+..++++|++++. .+..++...+.++ ||.+.+|..|+.. +.+++||++. .+++++++++++|++++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 394 (401)
T 1fc4_A 325 GADHAIIPVMLGDAVVAQKFARELQKE-GIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIG 394 (401)
T ss_dssp CSSSSEEEEEEECHHHHHHHHHHHHHT-TEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEcCChHHHHHHHHHHHHC-CcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 4688899999874 2345666666655 9999999877532 3568999975 58999999999999875
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-34 Score=275.92 Aligned_cols=332 Identities=14% Similarity=0.158 Sum_probs=240.6
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCC--CCCCCCC--CCCCHHHHHHHHHHHhccCCC-CCCcEEEcCChHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQE--GYSGYGA--EQGEKPLRAAIASTFYKDLGI-EEGDIFVSDGAKC 137 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~Y~~--~~g~~~lr~~la~~l~~~~~~-~~~~i~~~~G~~~ 137 (433)
.++|+|+.+.++ +.|+.+.+++.+.+....... +...|++ ..+..++|+++++++ +. ++++|++|+|+++
T Consensus 27 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~----~~~~~~~v~~~~g~t~ 101 (420)
T 1t3i_A 27 HPLVYLDNAATS-QKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFI----NARSPREIVYTRNATE 101 (420)
T ss_dssp EECEECBTTTCC-CCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHT----TCSCGGGEEEESSHHH
T ss_pred CceEEecCCccC-CCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHc----CCCCCCeEEEcCChHH
Confidence 348999999997 788999999999887532111 2334543 467899999999997 66 6799999999999
Q ss_pred HHHH-HHHh----cCCCCEEEEeCCCChhh----hhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCC
Q 045431 138 DISR-LQIV----FGSNVTMAVQDPSYPAY----VDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VAR 205 (433)
Q Consensus 138 al~~-l~~l----~~~gd~Vl~~~p~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~ 205 (433)
++.+ +..+ +++||+|++++|+|++. ....+..| .+++.++.+.+...+.+ +++ .++
T Consensus 102 a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~l~~~ 169 (420)
T 1t3i_A 102 AINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTG------------AVLKFVQLDEQESFDLEHFKTLLSEK 169 (420)
T ss_dssp HHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHC------------CEEEEECBCTTSSBCHHHHHHHCCTT
T ss_pred HHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcC------------cEEEEeccCCCCCcCHHHHHHhhCCC
Confidence 9997 5677 79999999999999984 45556677 47788887643222221 211 257
Q ss_pred ccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccc
Q 045431 206 TDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVR 285 (433)
Q Consensus 206 ~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r 285 (433)
+++|++++|+||||.+++ +++|.++|++||+++|+|++|+.... +..+..+ +.++++.|+||.+|.+|
T Consensus 170 ~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~---~~~~~~~----~~di~~~s~sK~~~~~g-- 237 (420)
T 1t3i_A 170 TKLVTVVHISNTLGCVNP---AEEIAQLAHQAGAKVLVDACQSAPHY---PLDVQLI----DCDWLVASGHKMCAPTG-- 237 (420)
T ss_dssp EEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTTS---CCCHHHH----TCSEEEEEGGGTTSCTT--
T ss_pred ceEEEEeCCcccccCcCC---HHHHHHHHHHcCCEEEEEhhhccCCc---cCchhhc----CCCEEEEehhhhcCCCc--
Confidence 899999999999999999 88999999999999999999985322 2223333 24589999999888667
Q ss_pred eeeeeccccccccCCcchhHHHHHHHhh--------------------ccCCCcHHHHHHHHH-hcCcCChhHHHHHHHH
Q 045431 286 LGWTVIPKELLFSDGFPVAKDFNRIVCT--------------------CFNGASNISQAGGLA-CLSPEGFKAVHEVIGF 344 (433)
Q Consensus 286 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~q~~~~~-~l~~~~~~~~~~~~~~ 344 (433)
+||++++++++ +.+...... ...+++.+.|.++.. +++.....++++++++
T Consensus 238 ~G~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~ 309 (420)
T 1t3i_A 238 IGFLYGKEEIL--------EAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNY 309 (420)
T ss_dssp CEEEEECHHHH--------HHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred eEEEEEchHHH--------hhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 89999998774 222211110 112355666665443 3331111246788899
Q ss_pred HHHHHHHHHHHHhhc-CCeeecCC-----CccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCC-----CC-CCeEEE
Q 045431 345 YKENTDIIVETFNSL-GFKVYGGK-----NAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGP-----GG-EGFIRV 412 (433)
Q Consensus 345 ~~~~~~~l~~~l~~~-g~~~~~~~-----~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~-----~~-~~~iRi 412 (433)
++++++.+.+.|++. |+++..+. .+.++++.+++.+..++... +.++||.+.+|..|.. .+ ++++||
T Consensus 310 ~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~gi~v~~~~~~~~~~~~~~g~~~~iRi 388 (420)
T 1t3i_A 310 EVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGLHASDVATM-VDQDGIAIRSGHHCTQPLHRLFDASGSARA 388 (420)
T ss_dssp HHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETTBCHHHHHHH-HHTTTEECBCSCTTCHHHHHHTTCCCCEEE
T ss_pred HHHHHHHHHHHHHhCCCeEEeCCCccccccCCEEEEEECCCCHHHHHHH-HHHCCeEEeeccccchHHHHhcCCCCeEEE
Confidence 999999999999998 88887664 25666677875455566554 5566999999975531 12 578999
Q ss_pred eec--cChhHHHHHHHHHHHhh
Q 045431 413 SAF--GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 413 ~~~--~~~~~l~~~l~~l~~~l 432 (433)
++. .+++++++++++|++++
T Consensus 389 s~~~~~~~~~i~~~~~~l~~~~ 410 (420)
T 1t3i_A 389 SLYFYNTKEEIDLFLQSLQATI 410 (420)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHHHH
Confidence 975 48999999999998875
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-33 Score=270.89 Aligned_cols=332 Identities=14% Similarity=0.154 Sum_probs=238.1
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCC----CCCCCCCCCHHHHHHHHHHHhccCCC-CCCcEEEcCChHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGY----SGYGAEQGEKPLRAAIASTFYKDLGI-EEGDIFVSDGAKC 137 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~Y~~~~g~~~lr~~la~~l~~~~~~-~~~~i~~~~G~~~ 137 (433)
.+++.|+.+.++ +.|+.+.+++.+.+.+....... ..|.+..+..++|+++++++ +. ++++|++|+|+++
T Consensus 22 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----~~~~~~~v~~~~g~t~ 96 (406)
T 1kmj_A 22 LPLAYLDSAASA-QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFI----NARSAEELVFVRGTTE 96 (406)
T ss_dssp EECEECCTTTCC-CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHT----TCSCGGGEEEESSHHH
T ss_pred CceEEecCCccC-CCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHc----CCCCCCeEEEeCChhH
Confidence 358999999987 67889999999988753210111 12334567889999999997 66 6799999999999
Q ss_pred HHHH-HHHh----cCCCCEEEEeCCCChhhhh----hHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCC
Q 045431 138 DISR-LQIV----FGSNVTMAVQDPSYPAYVD----SSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VAR 205 (433)
Q Consensus 138 al~~-l~~l----~~~gd~Vl~~~p~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~ 205 (433)
++.+ +..+ +++||+|++++|+|++... ..+..| .+++.++.+.+...+.+ +++ .++
T Consensus 97 a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~d~~~l~~~l~~~ 164 (406)
T 1kmj_A 97 GINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVG------------AELRVIPLNPDGTLQLETLPTLFDEK 164 (406)
T ss_dssp HHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHT------------CEEEEECBCTTSCBCGGGHHHHCCTT
T ss_pred HHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCC------------CEEEEEecCCCCCcCHHHHHHHhccC
Confidence 9997 5667 7999999999999987543 345566 47778887643222221 221 357
Q ss_pred ccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccc
Q 045431 206 TDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVR 285 (433)
Q Consensus 206 ~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r 285 (433)
+++|++++|+||||.+++ +++|.++|++||+++|+|++|+.... +.++... +.+++++|+||.+|++|
T Consensus 165 ~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~g~~---~~~~~~~----~~d~~~~s~~K~~g~~G-- 232 (406)
T 1kmj_A 165 TRLLAITHVSNVLGTENP---LAEMITLAHQHGAKVLVDGAQAVMHH---PVDVQAL----DCDFYVFSGHKLYGPTG-- 232 (406)
T ss_dssp EEEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTS---CCCHHHH----TCSEEEEEGGGTTSCTT--
T ss_pred CeEEEEeCCCccccCcCC---HHHHHHHHHHcCCEEEEEchhhcCCC---CCccccc----CCCEEEEEchhccCCCC--
Confidence 899999999999999999 89999999999999999999985321 2222222 34589999999998777
Q ss_pred eeeeeccccccccCCcchhHHHHHHHh---------------------hccCCCcHHHHHHHH-HhcCcCChhHHHHHHH
Q 045431 286 LGWTVIPKELLFSDGFPVAKDFNRIVC---------------------TCFNGASNISQAGGL-ACLSPEGFKAVHEVIG 343 (433)
Q Consensus 286 ~G~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~q~~~~-~~l~~~~~~~~~~~~~ 343 (433)
+||++++++++ +.+..... ....+++.+.+.++. ++++.....+++++++
T Consensus 233 ~G~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~ 304 (406)
T 1kmj_A 233 IGILYVKEALL--------QEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAE 304 (406)
T ss_dssp CEEEEECHHHH--------HHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred cEEEEEeHHHH--------hhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 89999998774 22211110 011234556666555 4443211124678888
Q ss_pred HHHHHHHHHHHHHhhc-CCeeecCC-CccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCC------CCCCeEEEeec
Q 045431 344 FYKENTDIIVETFNSL-GFKVYGGK-NAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGP------GGEGFIRVSAF 415 (433)
Q Consensus 344 ~~~~~~~~l~~~l~~~-g~~~~~~~-~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~------~~~~~iRi~~~ 415 (433)
+++++++++.+.|+++ |+.+..+. .+.++++.+++.+..++...+ .++||.+.||..|.. ..++++||++.
T Consensus 305 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~ 383 (406)
T 1kmj_A 305 YEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFL-DNYGIAVRTGHHCAMPLMAYYNVPAMCRASLA 383 (406)
T ss_dssp HHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEEEETTCCHHHHHHHH-HHTTEECEEECTTCHHHHHHTTCSCEEEEECC
T ss_pred HHHHHHHHHHHHHhcCCCeEEecCCCcCCEEEEEECCCCHHHHHHHH-hhCCcEEEeccccchHHHHhcCCCCeEEEEee
Confidence 9999999999999998 88887762 344555567755666666555 556999999886532 12579999974
Q ss_pred --cChhHHHHHHHHHHHhh
Q 045431 416 --GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 416 --~~~~~l~~~l~~l~~~l 432 (433)
.+++++++++++|++++
T Consensus 384 ~~~t~~~i~~~~~~l~~~~ 402 (406)
T 1kmj_A 384 MYNTHEEVDRLVTGLQRIH 402 (406)
T ss_dssp TTCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 38999999999998875
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=272.83 Aligned_cols=316 Identities=15% Similarity=0.134 Sum_probs=236.4
Q ss_pred CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCC-cEEEcCChHHHHHH-HHHhcCCCCEE
Q 045431 75 EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEG-DIFVSDGAKCDISR-LQIVFGSNVTM 152 (433)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~-~i~~~~G~~~al~~-l~~l~~~gd~V 152 (433)
.+.|+.+.+++.+.+. ..|++ ...++++++++++.+.++++++ +|++|+|+++++.+ +..++++||+|
T Consensus 43 ~~~~~~v~~a~~~~~~--------~~~~~--~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~~~~gd~V 112 (393)
T 1vjo_A 43 SNAHPSVLQAMNVSPV--------GHLDP--AFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEPGDVV 112 (393)
T ss_dssp CCCCHHHHHHHSSCCC--------CTTSH--HHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEE
T ss_pred CCCCHHHHHHHhcccc--------cccCH--HHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhccCCCCEE
Confidence 4677888887766442 14533 2567888888888775577778 99999999999997 67778999999
Q ss_pred EEeCCCChh--hhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CC-CccEEEEcCCCCccccCCCHHH
Q 045431 153 AVQDPSYPA--YVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VA-RTDIIFFCSPNNPTGAAATREQ 226 (433)
Q Consensus 153 l~~~p~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~-~~~~i~l~~p~nPtG~~~~~~~ 226 (433)
++++|+|++ +...++..| .+++.++.+.+...+.+ +++ .+ ++++|++++|+||||.+++
T Consensus 113 l~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~--- 177 (393)
T 1vjo_A 113 LIGVAGYFGNRLVDMAGRYG------------ADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQP--- 177 (393)
T ss_dssp EEEESSHHHHHHHHHHHHTT------------CEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---
T ss_pred EEEcCChhHHHHHHHHHHcC------------CceEEEecCCCCCCCHHHHHHHHhhCCceEEEEeccCCCcceecc---
Confidence 999999999 888888888 47888887653222221 221 13 7889999999999999998
Q ss_pred HHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHH
Q 045431 227 LTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKD 306 (433)
Q Consensus 227 ~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~ 306 (433)
+++|.++|++||++||+||+|+ +. ..+..+ .. .+.+++++|+||+++.+| |+||++++++++ +.
T Consensus 178 l~~i~~l~~~~~~~li~Dea~~-~g--~~~~~~---~~-~~~di~~~s~sK~l~~~~-~~G~l~~~~~~~--------~~ 241 (393)
T 1vjo_A 178 LEGVGELCREFGTLLLVDTVTS-LG--GVPIFL---DA-WGVDLAYSCSQKGLGCSP-GASPFTMSSRAI--------EK 241 (393)
T ss_dssp CTTHHHHHHHHTCEEEEECTTT-TT--TSCCCT---TT-TTCSEEECCSSSTTCSCS-SCEEEEECHHHH--------HH
T ss_pred HHHHHHHHHHcCCEEEEECCcc-cc--CcCCcc---cc-cCccEEEEcCcccccCCC-ceEEEEECHHHH--------HH
Confidence 7899999999999999999999 32 122222 21 245689999999998666 999999998874 32
Q ss_pred HHHH-------------------HhhccC-CCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecC
Q 045431 307 FNRI-------------------VCTCFN-GASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGG 366 (433)
Q Consensus 307 ~~~~-------------------~~~~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ 366 (433)
+... ...... +.+.+.|.++.++++.....++++++++++++++++.+.|++.|+.+..+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 321 (393)
T 1vjo_A 242 LQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVE 321 (393)
T ss_dssp HHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSC
T ss_pred HhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcCCcccCC
Confidence 2210 001122 57888888888888643223578899999999999999999888887765
Q ss_pred CC---ccEEEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--c-cChhHHHHHHHHHHHhhC
Q 045431 367 KN---APYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--F-GHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 367 ~~---g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~-~~~~~l~~~l~~l~~~l~ 433 (433)
.+ +.++|+.++ +.+..++...+.+++||.+.||..|. .++++||++ . .+++++++++++|+++++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~--~~~~iRis~~~~~~~~~~i~~~~~~l~~~l~ 393 (393)
T 1vjo_A 322 KEYRLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGEL--AGKVWRVGLMGFNSRKESVDQLIPALEQVLR 393 (393)
T ss_dssp GGGBCSSEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGG--TTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred ccccCCcEEEEEcCCCCCHHHHHHHHHhhCCEEEecCcccc--CCCEEEEeCCccCChHHHHHHHHHHHHHHhC
Confidence 43 457888887 45667777777665699999998664 357999994 3 366789999999999874
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-33 Score=263.93 Aligned_cols=321 Identities=14% Similarity=0.092 Sum_probs=228.8
Q ss_pred CCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEE
Q 045431 74 TEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTM 152 (433)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~V 152 (433)
+.++|+.+.+++.+.+.. ...|....+..++|+++++++ ++++++|++|+|+++++.+ +..++++||+|
T Consensus 9 p~~~~~~v~~a~~~~~~~------~~~~~~~~~~~~l~~~la~~~----g~~~~~i~~~~g~t~a~~~~~~~~~~~gd~v 78 (352)
T 1iug_A 9 PVRLHPKALEALARPQLH------HRTEAAREVFLKARGLLREAF----RTEGEVLILTGSGTLAMEALVKNLFAPGERV 78 (352)
T ss_dssp SCCCCHHHHHHHHSCCCC------TTSHHHHHHHHHHHHHHHHHH----TCSSEEEEEESCHHHHHHHHHHHHCCTTCEE
T ss_pred CCCCCHHHHHHhccCCCC------ccCHHHHHHHHHHHHHHHHHh----CCCCceEEEcCchHHHHHHHHHhccCCCCeE
Confidence 356788888888776531 111222345688999999998 7778899999999999997 57778999999
Q ss_pred EEeCCCChhhh--hhHHHhCCcccccccccccceEEEeecCccCCccc-CCCCCCCccEEEEcCCCCccccCCCHHHHHH
Q 045431 153 AVQDPSYPAYV--DSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFP-DLSTVARTDIIFFCSPNNPTGAAATREQLTR 229 (433)
Q Consensus 153 l~~~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~ 229 (433)
++++|+|+++. ..++..| .+++.++.+.++.++. ++++ +++++|++++|+||||.+++ +++
T Consensus 79 l~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~-~~~~~v~~~~~~nptG~~~~---l~~ 142 (352)
T 1iug_A 79 LVPVYGKFSERFYEIALEAG------------LVVERLDYPYGDTPRPEDVAK-EGYAGLLLVHSETSTGALAD---LPA 142 (352)
T ss_dssp EEEECSHHHHHHHHHHHHTT------------CEEEEEECCTTCCCCTTTSCC-SSCSEEEEESEETTTTEECC---HHH
T ss_pred EEEeCCchhHHHHHHHHHcC------------CceEEEeCCCCCCCCHHHHhc-cCCcEEEEEEecCCcceecC---HHH
Confidence 99999999975 3334456 4788888765432322 2344 67899999999999999999 789
Q ss_pred HHHHHHHc--CCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCc-----c
Q 045431 230 LVQFAKDN--GSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGF-----P 302 (433)
Q Consensus 230 i~~~a~~~--~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~-----~ 302 (433)
|.++|++| |++||+|++|+.. ..+.++... +..++++|+||+++ ++.++||++++++++..-.. .
T Consensus 143 i~~l~~~~~~~~~li~D~a~~~~---~~~~~~~~~----~~d~~~~s~~K~~~-~~~g~G~~~~~~~~~~~~~~~~~~~~ 214 (352)
T 1iug_A 143 LARAFKEKNPEGLVGADMVTSLL---VGEVALEAM----GVDAAASGSQKGLM-CPPGLGFVALSPRALERLKPRGYYLD 214 (352)
T ss_dssp HHHHHHHHCTTCEEEEECTTTBT---TBCCCSGGG----TCSEEEEESSSTTC-CCSCEEEEEECHHHHHTCCCCSSTTC
T ss_pred HHHHHHhhCCCCEEEEECCcccc---Ccceecccc----CeeEEEecCccccc-CCCceeEEEECHHHHHHhhCCCceee
Confidence 99999999 9999999999731 112222222 23588999999553 33358999998886521000 0
Q ss_pred hhHHHHHH-HhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCC-CccEEEEECC-CC
Q 045431 303 VAKDFNRI-VCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGK-NAPYVWVQFP-GR 379 (433)
Q Consensus 303 ~~~~~~~~-~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~g~~~~~~~~-~~ 379 (433)
+...+... ........+...+.++.++++... .++++.+++++++++++.+.|+++|+.+..+. .+.++|+.++ +.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~ 293 (352)
T 1iug_A 215 LARELKAQKEGESAWTPAINLVLAVAAVLEEVL-PRLEEHLALKAWQNALLYGVGEEGGLRPVPKRFSPAVAAFYLPEGV 293 (352)
T ss_dssp HHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHG-GGHHHHHHHHHHHHHHHHHHHHHTTCEESCSSBCTTCEEEECCTTC
T ss_pred HHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCcccccccCCeEEEEEcCCCC
Confidence 01111111 112233456677766666665321 23688899999999999999998888887664 6789999998 55
Q ss_pred ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec--cChhHHHHHHHHHHHhh
Q 045431 380 SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF--GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 380 ~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~l~~~l~~l~~~l 432 (433)
+..++...+.++ ||.+.+|.. +..++++||++. .+++++++++++|++++
T Consensus 294 ~~~~~~~~l~~~-gi~v~~~~~--~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 345 (352)
T 1iug_A 294 PYARVKEAFAQR-GAVIAGGQG--PLKGKVFRLSLMGAYDRYEALGVAGMFREVL 345 (352)
T ss_dssp CHHHHHHHHHTT-TEECEECCG--GGTTTEEEECCCSSCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHC-CEEEEeCCC--ccCCCEEEEEccccCCHHHHHHHHHHHHHHH
Confidence 667777776655 999999873 234679999975 47999999999998875
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-33 Score=266.19 Aligned_cols=322 Identities=12% Similarity=0.096 Sum_probs=235.1
Q ss_pred CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCC-CCcEEEcCChHHHHHH-HHHhcCCCCEE
Q 045431 75 EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIE-EGDIFVSDGAKCDISR-LQIVFGSNVTM 152 (433)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~-~~~i~~~~G~~~al~~-l~~l~~~gd~V 152 (433)
.+.++.+.+++.+.+. ..|++ ...++++++++++.+.++++ +++|++|+|+++++.+ +..++++||+|
T Consensus 29 ~~~~~~v~~a~~~~~~--------~~~~~--~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l~~~gd~v 98 (386)
T 2dr1_A 29 VACFPEVLEIMKVQMF--------SHRSK--EYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNGVSKGGKV 98 (386)
T ss_dssp CCCCHHHHHHTTSCCC--------CTTSH--HHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHHSCTTCEE
T ss_pred cCCcHHHHHHHhcccc--------cccCH--HHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHhhcCCCeE
Confidence 3567777777665432 24533 23678888888887645665 7789999999999997 57778999999
Q ss_pred EEeCCCChh--hhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC----CCCccEEEEcCCCCccccCCCHH
Q 045431 153 AVQDPSYPA--YVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST----VARTDIIFFCSPNNPTGAAATRE 225 (433)
Q Consensus 153 l~~~p~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~i~l~~p~nPtG~~~~~~ 225 (433)
++++|+|++ +...++..| .+++.++.+.+...+.+ +++ .+++++|++++|+||||.+++
T Consensus 99 l~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~-- 164 (386)
T 2dr1_A 99 LVTIIGAFGKRYKEVVESNG------------RKAVVLEYEPGKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNP-- 164 (386)
T ss_dssp EEEESSHHHHHHHHHHHHTT------------CEEEEEECCTTCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECC--
T ss_pred EEEcCCchhHHHHHHHHHhC------------CceEEEecCCCCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCC--
Confidence 999999998 777778788 47888887653222222 221 357899999999999999988
Q ss_pred HHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCc----
Q 045431 226 QLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGF---- 301 (433)
Q Consensus 226 ~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~---- 301 (433)
+++|.++|++||++||+|++|+.+.. +.++.. .+.+++++|+||+++.+ .++||++++++++..-..
T Consensus 165 -l~~i~~l~~~~~~~li~D~a~~~~~~---~~~~~~----~~~di~~~s~sK~~~~~-~g~G~~~~~~~~~~~~~~~~~~ 235 (386)
T 2dr1_A 165 -LPELAKVAKEHDKLVFVDAVSAMGGA---DIKFDK----WGLDVVFSSSQKAFGVP-PGLAIGAFSERFLEIAEKMPER 235 (386)
T ss_dssp -HHHHHHHHHHTTCEEEEECTTTBTTB---CCCTTT----TTCSEEEEETTSTTCCC-SSCEEEEECHHHHHHHTTCTTC
T ss_pred -HHHHHHHHHHcCCeEEEEccccccCc---cccccc----cCCcEEEEeccccccCC-CceEEEEECHHHHHHHhcCCCC
Confidence 79999999999999999999996543 122222 23569999999999854 349999999887511000
Q ss_pred ----chhHHHHHH--HhhccCCCcHHHHHHHHHhcCcCChh-HHHHHHHHHHHHHHHHHHHHhhcCCeeecCC---CccE
Q 045431 302 ----PVAKDFNRI--VCTCFNGASNISQAGGLACLSPEGFK-AVHEVIGFYKENTDIIVETFNSLGFKVYGGK---NAPY 371 (433)
Q Consensus 302 ----~~~~~~~~~--~~~~~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~---~g~~ 371 (433)
.....+... ......+.+.+.|.++.++++..... ++++++++++++++.+.+.|+++|+.+..+. .+.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 315 (386)
T 2dr1_A 236 GWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREIGLDILAEPGHESPTI 315 (386)
T ss_dssp CSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCTTCBCSSE
T ss_pred ceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeeCcCccccCCce
Confidence 000001111 11334457788888887777632112 3678899999999999999998888877654 4788
Q ss_pred EEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec--cChhHHHHHHHHHHHhh
Q 045431 372 VWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF--GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 372 ~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~l~~~l~~l~~~l 432 (433)
+|+.++ +.+..++...+.++ ||.+.||..+. ..+++||++. .+++++++++++|++++
T Consensus 316 ~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~~~~--~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 376 (386)
T 2dr1_A 316 TAVLTPPGIKGDEVYEAMRKR-GFELAKGYGSV--KEKTFRIGHMGYMKFEDIQEMLDNLREVI 376 (386)
T ss_dssp EEEECCTTCCHHHHHHHHHHT-TEECEECCGGG--TTTEEEEECCSSCCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHC-CeEEecCcccc--CCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 999997 55677777777766 99999988543 3579999976 58999999999998875
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-33 Score=268.73 Aligned_cols=316 Identities=15% Similarity=0.126 Sum_probs=225.3
Q ss_pred EEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCH---HHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-
Q 045431 66 ISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEK---PLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR- 141 (433)
Q Consensus 66 i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~---~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~- 141 (433)
..++.++|+++.|+.+.+++.+.+...........|+. .|.+ +|++++++++ +.+ ++++++|+++++.+
T Consensus 21 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~~~~l~~~ia~~~----g~~--~~i~~~~g~~ai~~~ 93 (404)
T 1e5e_A 21 QFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTR-LGNPTVSNLEGKIAFLE----KTE--ACVATSSGMGAIAAT 93 (404)
T ss_dssp TTCCSSCCCCCCSBCCCSSHHHHHHHHTTSSCSCCBTT-TCCHHHHHHHHHHHHHH----TCS--EEEEESSHHHHHHHH
T ss_pred CCCCcCCCCcCCCccccCCHHHHHHhhcCCcCCccccC-CcChHHHHHHHHHHHHh----CCC--cEEEeCChHHHHHHH
Confidence 46899999998888777777666542211134557866 6777 8999999998 553 67777777899987
Q ss_pred HHHhcCCCCEEEEeCCCChhhhh----hHHHhCCcccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCc
Q 045431 142 LQIVFGSNVTMAVQDPSYPAYVD----SSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNP 217 (433)
Q Consensus 142 l~~l~~~gd~Vl~~~p~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nP 217 (433)
+..++++||+|++++|+|+++.. .++..| .+++.++.++...+...+ .+++++|++++|+||
T Consensus 94 ~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g------------~~~~~v~~~d~~~l~~~i--~~~t~~v~l~~p~Np 159 (404)
T 1e5e_A 94 VLTILKAGDHLISDECLYGCTHALFEHALTKFG------------IQVDFINTAIPGEVKKHM--KPNTKIVYFETPANP 159 (404)
T ss_dssp HHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTT------------CEEEEECTTSTTHHHHHC--CTTEEEEEEESSCTT
T ss_pred HHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcC------------CEEEEECCCCHHHHHHhc--CCCCcEEEEECCCCC
Confidence 57788999999999999999887 566677 477788775221111111 257899999999999
Q ss_pred cccCCCHHHHHHHHHHHHH-cCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccce-eeeeccccc
Q 045431 218 TGAAATREQLTRLVQFAKD-NGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRL-GWTVIPKEL 295 (433)
Q Consensus 218 tG~~~~~~~~~~i~~~a~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~-G~l~~~~~~ 295 (433)
||.+++ +++|+++|++ ||+++|+||+|+.+.+. .++ .+ ++++++.|+||+++++|+|+ ||+++++++
T Consensus 160 tG~v~~---l~~i~~la~~~~~~~li~De~~~~~~~~---~~~-~~----~~di~~~S~sK~~~~~g~ri~G~~~~~~~~ 228 (404)
T 1e5e_A 160 TLKIID---MERVCKDAHSQEGVLVIADNTFCSPMIT---NPV-DF----GVDVVVHSATKYINGHTDVVAGLICGKADL 228 (404)
T ss_dssp TCCCCC---HHHHHHHHHTSTTCEEEEECTTTCTTTC---CGG-GG----TCSEEEEETTTTTTCSSCCCCEEEEECHHH
T ss_pred CCcccC---HHHHHHHHHhhcCCEEEEECCCchhhhC---Ccc-cc----CCEEEEEcCccccCCCCCCeEEEEEECHHH
Confidence 999997 8999999999 99999999999987553 122 22 35699999999999999998 999999887
Q ss_pred cccCCcchhH-HHHHHHhhc-cCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcC-C-----------
Q 045431 296 LFSDGFPVAK-DFNRIVCTC-FNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLG-F----------- 361 (433)
Q Consensus 296 ~~~~~~~~~~-~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~----------- 361 (433)
+ + .+....... ....+++.|.++.+.++. +....++..++.+.+.+.+++.. +
T Consensus 229 ~--------~~~l~~~~~~~~g~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~ 295 (404)
T 1e5e_A 229 L--------QQIRMVGIKDITGSVISPHDAWLITRGLST-----LNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDH 295 (404)
T ss_dssp H--------HHHHHTCCCCCCCCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSS
T ss_pred H--------HHHHHHHHHhCCCCCCCHHHHHHHHHhHhH-----HHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCC
Confidence 5 4 555444333 345788888888888863 23344455666666777776542 2
Q ss_pred ---eeecC----CCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCC-----------------------CC--CCe
Q 045431 362 ---KVYGG----KNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGP-----------------------GG--EGF 409 (433)
Q Consensus 362 ---~~~~~----~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~-----------------------~~--~~~ 409 (433)
.+..+ .++++.| ++++ ..+....++++.|| +.+|..|+. .+ +++
T Consensus 296 p~~~~~~~~~~~~g~~~~~-~~~~--~~~~~~~~l~~~~i-~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~ 371 (404)
T 1e5e_A 296 EGHDIAKKQMRMYGSMITF-ILKS--GFEGAKKLLDNLKL-ITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGM 371 (404)
T ss_dssp TTHHHHHHHCSSCCSEEEE-EETT--HHHHHHHHHHTCSS-SEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTE
T ss_pred ccHHHHHhhCCCCceEEEE-EeCC--CHHHHHHHHHhCCC-ceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCe
Confidence 11111 1444454 8764 23445567778898 556655542 22 689
Q ss_pred EEEeeccChhHHHHHHHHHHHhh
Q 045431 410 IRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 410 iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+|||+.. +++++++++|++++
T Consensus 372 iRis~g~--e~~~~li~~l~~al 392 (404)
T 1e5e_A 372 IRLSVGI--EDADELIADFKQGL 392 (404)
T ss_dssp EEEECCS--SCHHHHHHHHHHHH
T ss_pred EEEEeCC--CCHHHHHHHHHHHH
Confidence 9999876 77888888887764
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-33 Score=268.47 Aligned_cols=335 Identities=14% Similarity=0.159 Sum_probs=235.7
Q ss_pred CCCceEEecCCCC--CCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHH
Q 045431 61 PDAEVISLGIGDT--TEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 61 ~~~~~i~l~~g~~--~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~ 137 (433)
++...+||+.+.+ ++. +++.+.+++.+.+.+.. .....| +..+..+|++++++++ ++ +++|++|+|+++
T Consensus 26 ~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~--~~~~~y-~~~~~~~l~~~la~~~----g~-~~~v~~~~g~t~ 97 (375)
T 2eh6_A 26 EGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLL--HVSNLY-ENPWQEELAHKLVKHF----WT-EGKVFFANSGTE 97 (375)
T ss_dssp TCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCS--CCCTTB-CCHHHHHHHHHHHHTS----SS-CEEEEEESSHHH
T ss_pred CCCEEEEcCCcccccccCCCCHHHHHHHHHHHHhcc--ccCccc-CCHHHHHHHHHHHhhc----CC-CCeEEEeCchHH
Confidence 4557899998875 455 78999999999887542 222357 4567889999999986 66 489999999999
Q ss_pred HHHHH-HH---hc---CCC-CEEEEeCCCChhhhhhHHHhCCccccc-ccccccceEEEeecCccCCcccCCCCCCCccE
Q 045431 138 DISRL-QI---VF---GSN-VTMAVQDPSYPAYVDSSVIMGQTGEFQ-KDAEKYGKIEYMRCTAENGFFPDLSTVARTDI 208 (433)
Q Consensus 138 al~~l-~~---l~---~~g-d~Vl~~~p~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (433)
++.++ .. ++ ++| |+|++++|+|+++...+...+...++. ........+..++..+.+.+...+ .+++++
T Consensus 98 a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l--~~~~~~ 175 (375)
T 2eh6_A 98 SVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKLNDIDSVYKLL--DEETAG 175 (375)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECTTCHHHHHTTC--CTTEEE
T ss_pred HHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCCchHHHHHHHh--cCCeEE
Confidence 99874 32 35 788 999999999998877665555322100 000000113333332111111111 257899
Q ss_pred EEEcCCCCccccC-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccccccee
Q 045431 209 IFFCSPNNPTGAA-ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLG 287 (433)
Q Consensus 209 i~l~~p~nPtG~~-~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G 287 (433)
|++++|+||||.+ .+.+++++|.++|++||+++|+||+|+++...+.+.++..+....+ ++ ||||.++ +|+|+|
T Consensus 176 v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d-~~---s~SK~~~-~g~~~G 250 (375)
T 2eh6_A 176 IIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPD-VI---ALAKGLG-GGVPIG 250 (375)
T ss_dssp EEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCS-EE---EECGGGG-TTSCCE
T ss_pred EEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCC-EE---EEccccc-CCCCeE
Confidence 9998999999999 4688899999999999999999999997655443333333321122 23 8899998 899999
Q ss_pred eeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCC
Q 045431 288 WTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGK 367 (433)
Q Consensus 288 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~ 367 (433)
|++++++++ +.+.........+.+.+.|.++.++++. +++..++++++++++.+.|++++....+ .
T Consensus 251 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~ 316 (375)
T 2eh6_A 251 AILAREEVA--------QSFTPGSHGSTFGGNPLACRAGTVVVDE-----VEKLLPHVREVGNYFKEKLKELGKGKVK-G 316 (375)
T ss_dssp EEEEEHHHH--------TTCCTTSCCCSSTTCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHTTSSEEE-E
T ss_pred EEEEcHHHH--------hhhcCCCCCCCCCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhcCCce-E
Confidence 999988764 2222211223445688888887777653 1267788889999999999887654433 4
Q ss_pred CccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 368 NAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 368 ~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
.|+++|++++. +..++...+.+ +||.+.|+ +++++||++ ..+++++++++++|++++
T Consensus 317 ~g~~~~~~~~~-~~~~~~~~l~~-~gi~~~~~------~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 375 (375)
T 2eh6_A 317 RGLMLGLELER-ECKDYVLKALE-KGLLINCT------AGKVLRFLPPLIIQKEHIDRAISVLREIL 375 (375)
T ss_dssp ETTEEEEECSS-CCHHHHHHHHH-TTEECEEE------TTTEEEECCCTTCCHHHHHHHHHHHHHHC
T ss_pred EEEEEEEEEcC-cHHHHHHHHHH-CCCEEecC------CCCEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 67899999974 45667777765 69999885 257899995 468999999999999864
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-32 Score=263.49 Aligned_cols=331 Identities=14% Similarity=0.077 Sum_probs=235.1
Q ss_pred CCCceEEecCCCC-CCCChHHHHHHHHHHHhhcccCC--CCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHH
Q 045431 61 PDAEVISLGIGDT-TEPIPEVITSALAKRSYALSTQE--GYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 61 ~~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~ 137 (433)
++..++||+.+++ +++.++.+.+++.+++.++.... ....|+......++++.+++++ +.+ +.|++++| ++
T Consensus 57 ~g~~~ld~~s~~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g~~-~~i~~~sG-t~ 130 (409)
T 3kki_A 57 ASPDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFT----GFD-ECLLSQSG-WN 130 (409)
T ss_dssp CCTTSEECCCSCTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHH----TCS-EEEEESCH-HH
T ss_pred CCCceEEeeccCccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHh----CCC-eEEEecch-HH
Confidence 3567899988875 46678999999999998643211 1122343456778999999887 544 35666666 57
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC---CCCccEEEEcC
Q 045431 138 DISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST---VARTDIIFFCS 213 (433)
Q Consensus 138 al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~l~~ 213 (433)
++.. +..++++||.|++++|+|+.+...+...| .+++.++..+ ..++++ ..++++|++++
T Consensus 131 a~~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~~~g------------~~~~~~~~~d----~~~le~~l~~~~~~~vi~~~ 194 (409)
T 3kki_A 131 ANVGLLQTICQPNTNVYIDFFAHMSLWEGARYAN------------AQAHPFMHNN----CDHLRMLIQRHGPGIIVVDS 194 (409)
T ss_dssp HHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTT------------CEEEEECTTC----HHHHHHHHHHHCSCEEEEES
T ss_pred HHHHHHHHhcCCCCEEEECCCcCHHHHHHHHHcC------------CeEEEecCCC----HHHHHHHHHhcCCeEEEECC
Confidence 7775 78889999999999999999999888888 3666665421 111221 13478999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccc-cCCCCcceEEEecccccccccccceeeeecc
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFE-IPGAKEVAIETSSFSKYAGFTGVRLGWTVIP 292 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~-~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~ 292 (433)
|+||||.+++ +++|.++|++||++||+||+|+...+......... .+..++..++++||||+++++ .||++++
T Consensus 195 ~~nptG~~~~---l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~~~---gg~v~~~ 268 (409)
T 3kki_A 195 IYSTLGTIAP---LAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYR---AGAIWCN 268 (409)
T ss_dssp BCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSS---CEEEEES
T ss_pred CCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhCCC---ceEEEEC
Confidence 9999999999 88999999999999999999997444321122211 221123458999999999855 4999999
Q ss_pred ccccccCCcchhHHHHHHHh--hccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCcc
Q 045431 293 KELLFSDGFPVAKDFNRIVC--TCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAP 370 (433)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~ 370 (433)
++++ +.+..... ......+.+.+.++.+.++.. +..++++++++++++++.+.|++.|+.+. ..++
T Consensus 269 ~~~~--------~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~ 336 (409)
T 3kki_A 269 NEVN--------RCVPFISYPAIFSSTLLPYEAAGLETTLEII--ESADNRRQHLDRMARKLRIGLSQLGLTIR--SESQ 336 (409)
T ss_dssp SSGG--------GTHHHHCHHHHHSBCCCHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHTTTCCCC--CSSS
T ss_pred HHHH--------HHHHHhCcCccccCCCcHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHcCCccC--CCCC
Confidence 9885 33333211 112235566666666666522 22267888999999999999999888765 3788
Q ss_pred EEEEECCCC-ChHHHHHHHHHcCCeEecCCCCCC-CCCCCeEEEeec--cChhHHHHHHHHHHHhh
Q 045431 371 YVWVQFPGR-SSWDVFSEILEKTHVVTTPGSGFG-PGGEGFIRVSAF--GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 371 ~~~~~~~~~-~~~~~~~~l~~~~gi~v~~g~~f~-~~~~~~iRi~~~--~~~~~l~~~l~~l~~~l 432 (433)
++|+.++.. ...++...++++ ||.+.|+..+. +.+.+++||++. .+++++++++++|++++
T Consensus 337 ~~~~~~~~~~~~~~~~~~L~~~-Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l 401 (409)
T 3kki_A 337 IIGLETGDERNTEKVRDYLESN-GVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAV 401 (409)
T ss_dssp EEEEEEESHHHHHHHHHHHHHT-TEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHC-CceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 899988742 344566676665 99998865432 345689999974 58999999999999876
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=270.55 Aligned_cols=326 Identities=13% Similarity=0.086 Sum_probs=229.3
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhccc--C--CCCCCCCCCCCCHHHHHH-HHHHHhccCCCCCCcEEEcCChHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALST--Q--EGYSGYGAEQGEKPLRAA-IASTFYKDLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~--~--~~~~~Y~~~~g~~~lr~~-la~~l~~~~~~~~~~i~~~~G~~~ 137 (433)
+++|.|+.|.+..++++.+.+++.+.+..... . .....|.+..+..++++. +++++ +.+ +|++|+|+++
T Consensus 7 ~~~i~ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~----~~~--~v~~~~g~t~ 80 (371)
T 2e7j_A 7 KDFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFL----GCD--VARVTNGARE 80 (371)
T ss_dssp -CCEECCHHHHTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHT----TSS--EEEEESSHHH
T ss_pred CCcEEecccccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHc----CCC--EEEEeCChHH
Confidence 35788888766667889999999987764210 0 012245567899999999 99997 655 9999999999
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEee--cCccCCcccC-CCC--C-----CCc
Q 045431 138 DISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMR--CTAENGFFPD-LST--V-----ART 206 (433)
Q Consensus 138 al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~--~-----~~~ 206 (433)
++.+ +..++++||+|++++|+|+++...++..| .+++.++ .+++..++.+ +++ . +++
T Consensus 81 a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~ 148 (371)
T 2e7j_A 81 AKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAG------------LNIALVPKTDYPDYAITPENFAQTIEETKKRGEV 148 (371)
T ss_dssp HHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTT------------CEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCE
T ss_pred HHHHHHHHHhCCCCEEEEccCcchHHHHHHHHcC------------CeEEEeecccCCCCCcCHHHHHHHHHhhcccCCe
Confidence 9997 57778999999999999999998888888 4788888 6543332222 221 1 578
Q ss_pred cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccce
Q 045431 207 DIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRL 286 (433)
Q Consensus 207 ~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~ 286 (433)
++|++++|+||||.+++ +++|.++|++||++||+||+|+.+.. +.++..++ ..++++|+||+++ ++.|+
T Consensus 149 ~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~li~D~a~~~~~~---~~~~~~~~----~di~~~s~sK~~~-~~~~~ 217 (371)
T 2e7j_A 149 VLALITYPDGNYGNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRM---PVSLKEIG----ADFIVGSGHKSMA-ASGPI 217 (371)
T ss_dssp EEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTTBTTB---CCCHHHHT----CSEEEEEHHHHSS-CCSSC
T ss_pred EEEEEECCCCCCcccCC---HHHHHHHHHHcCCeEEEECccccCCC---CCChhhcC----CCEEEecCCcCCC-CCCCc
Confidence 89999999999999999 68999999999999999999997533 22333332 2389999999997 55699
Q ss_pred eeeeccccccccCCcchhHHHHHHHh--hc-----cCCCcHHHHHHHHHhcCcCChhHHHHHHHHH--HHHHHHHHHHHh
Q 045431 287 GWTVIPKELLFSDGFPVAKDFNRIVC--TC-----FNGASNISQAGGLACLSPEGFKAVHEVIGFY--KENTDIIVETFN 357 (433)
Q Consensus 287 G~l~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~--~~~~~~l~~~l~ 357 (433)
||++++++++... +..... .. ....+...+.++.++++.. . ++..+++ +++++++.+.|+
T Consensus 218 G~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~--~~~~~~~~~~~~~~~l~~~L~ 286 (371)
T 2e7j_A 218 GVMGMKEEWAEIV-------LRRSEKYKNKEVELLGCTARGATIITLMASFPHV--R--ERIKRWDEEVEKARRFAAEME 286 (371)
T ss_dssp EEEEECTTTTTTT-------TCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHH--H--HHGGGHHHHHHHHHHHHHHHH
T ss_pred EEEEEechhhhhh-------ccccccCcccccccccCCcCHHHHHHHHHHHHHH--H--HHHHHHHHHHHHHHHHHHHHH
Confidence 9999998875210 111111 01 2234445454444444311 1 1556677 888899999998
Q ss_pred hcCCeeecCC--CccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCC----CCCCeEE-Eeec---cChhHHHHHHHH
Q 045431 358 SLGFKVYGGK--NAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGP----GGEGFIR-VSAF---GHRGNVLEACKR 427 (433)
Q Consensus 358 ~~g~~~~~~~--~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~----~~~~~iR-i~~~---~~~~~l~~~l~~ 427 (433)
++|+.+..+. .+.++|++++ +..++...+. ++||.+.| ..|.. ..++++| +++. .+++++++++++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~-~~gi~~~~-~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~ 362 (371)
T 2e7j_A 287 KLGIKQLGDNPHNHDLMFFHAE--VLYEISKKAK-GGRFFLYR-ELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNA 362 (371)
T ss_dssp HTTCEEESSSSCCSSEEEEECH--HHHHHHHHSS-SGGGHHHH-HHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHH
T ss_pred HcCcEEecCCCccCceEEEECC--CHHHHHHHHH-HCCEEEEe-ccccccccCCCCCceEEEEeeccCCCHHHHHHHHHH
Confidence 8888887654 4778999987 4455655555 66999988 43322 1257899 9975 689999999999
Q ss_pred HHHhh
Q 045431 428 FKHLY 432 (433)
Q Consensus 428 l~~~l 432 (433)
|++++
T Consensus 363 l~~~~ 367 (371)
T 2e7j_A 363 FKEII 367 (371)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=266.02 Aligned_cols=337 Identities=9% Similarity=0.061 Sum_probs=235.4
Q ss_pred CCCceEEecCCCCCCC---ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHH
Q 045431 61 PDAEVISLGIGDTTEP---IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~ 137 (433)
++..++|++.+.+..+ .++.+.+++.+.+.+... ....| +.....++++.+++++ + ++++++++|+++
T Consensus 34 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~-~~~~~~~l~~~la~~~----g--~~~v~~~~~gt~ 104 (392)
T 3ruy_A 34 EGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTL--TSRAF-HSDQLGPWYEKVAKLT----N--KEMVLPMNTGAE 104 (392)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSC--CCTTS-EETTHHHHHHHHHHHH----T--CSEEEEESSHHH
T ss_pred CCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhccc--ccccc-CCHHHHHHHHHHHHhc----C--CCEEEEeCcHHH
Confidence 4567899988765433 589999999998875421 11122 3445677888887776 4 689999999999
Q ss_pred HHHH-HHHhcCC----------CCEEEEeCCCChhhhhhHHHhCCc-ccccccccccceEEEeecCccCCcccCCCCCCC
Q 045431 138 DISR-LQIVFGS----------NVTMAVQDPSYPAYVDSSVIMGQT-GEFQKDAEKYGKIEYMRCTAENGFFPDLSTVAR 205 (433)
Q Consensus 138 al~~-l~~l~~~----------gd~Vl~~~p~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (433)
++.+ +..+..+ +|+|++++|+|++.......++.. ............+..++.++...+...+ .++
T Consensus 105 a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l--~~~ 182 (392)
T 3ruy_A 105 AVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYGDLEALKAAI--TPN 182 (392)
T ss_dssp HHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTTCHHHHHHHC--CTT
T ss_pred HHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCcccHHHHHHHh--ccC
Confidence 9987 4444433 679999999998876665555432 1111111112234444443111111111 268
Q ss_pred ccEEEEcCCCCccccCCCHHH-HHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccc-
Q 045431 206 TDIIFFCSPNNPTGAAATREQ-LTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTG- 283 (433)
Q Consensus 206 ~~~i~l~~p~nPtG~~~~~~~-~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G- 283 (433)
+++|++++|+||||.+++.++ +++|.++|++||+++|+||+|+++.+.+.+....... ...++ .||||.++ +|
T Consensus 183 ~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~-~~~d~---~~~SK~l~-gG~ 257 (392)
T 3ruy_A 183 TAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDN-VTPDM---YILGKALG-GGV 257 (392)
T ss_dssp EEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGT-CCCSE---EEECGGGG-TTT
T ss_pred eEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccC-CCCCE---EEEchhhh-CCh
Confidence 999999999999999996555 9999999999999999999998776665443332222 22223 37899986 67
Q ss_pred cceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcC---
Q 045431 284 VRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLG--- 360 (433)
Q Consensus 284 ~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g--- 360 (433)
+|+||++++++++ +.+.........+.+.+++.++.++++... . ++.+++++++++++.+.|++++
T Consensus 258 ~~~G~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~-~~~~~~~~~~~~~l~~~L~~~~~~~ 326 (392)
T 3ruy_A 258 FPISCAAANRDIL--------GVFEPGSHGSTFGGNPLACAVSIAALEVLE--E-EKLTERSLQLGEKLVGQLKEIDNPM 326 (392)
T ss_dssp SCCEEEEECHHHH--------TTCCTTSSCCSSTTCHHHHHHHHHHHHHHH--H-TTHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred hhhEEEEECHHHH--------hhhccCCcCCCCCCCHHHHHHHHHHHHHHH--h-hhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999998775 333333344456678999998888887321 1 6678889999999999999874
Q ss_pred CeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe--eccChhHHHHHHHHHHHhhC
Q 045431 361 FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS--AFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 361 ~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l~ 433 (433)
+....+ .|.++++.++. +..++...+. ++||.+.||. .+++|++ +..+++++++++++|+++++
T Consensus 327 ~~~~~~-~g~~~~~~~~~-~~~~l~~~l~-~~gi~v~~~~------~~~iRi~~~~~~~~~~i~~~~~~l~~~l~ 392 (392)
T 3ruy_A 327 ITEVRG-KGLFIGIELNE-PARPYCEQLK-AAGLLCKETH------ENVIRIAPPLVISEEDLEWAFQKIKAVLS 392 (392)
T ss_dssp EEEEEE-ETTEEEEEESS-CSHHHHHHHH-TTTEECCCBT------TTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred ceEEEe-eeeEEEEEEcc-hHHHHHHHHH-HCCcEEecCC------CCEEEEECCCCCCHHHHHHHHHHHHHHhC
Confidence 333443 46677777776 5667777766 5699999864 5799999 46789999999999999874
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-32 Score=262.02 Aligned_cols=333 Identities=14% Similarity=0.103 Sum_probs=234.4
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCC--CCCCC-CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGY--SGYGA-EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDIS 140 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~Y~~-~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~ 140 (433)
+.+.|+.+.+. +.|+.+.+++.+.+......... ..|.. ..+..++|+++++++ ++++++|++|+|+++++.
T Consensus 16 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~----g~~~~~v~~~~g~t~a~~ 90 (390)
T 1elu_A 16 NKTYFNFGGQG-ILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETF----NVDPNTITITDNVTTGCD 90 (390)
T ss_dssp TSEECCTTTCC-CCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHT----TSCGGGEEEESSHHHHHH
T ss_pred CeEEecCCccC-CCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHc----CCCHHHEEEeCChHHHHH
Confidence 47889888753 67788999999988653210111 13532 367899999999997 788889999999999999
Q ss_pred H-HHHh-cCCCCEEEEeCCCChhhhhh----HHHhCCcccccccccccceEEEeecCccCCcccC---CCC--CCCccEE
Q 045431 141 R-LQIV-FGSNVTMAVQDPSYPAYVDS----SVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD---LST--VARTDII 209 (433)
Q Consensus 141 ~-l~~l-~~~gd~Vl~~~p~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~i 209 (433)
+ +..+ +++||+|++++|+|+++... .+..| .+++.++.+.+.++..+ +++ .+++++|
T Consensus 91 ~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v 158 (390)
T 1elu_A 91 IVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFG------------ITYRFFPVAATLNQGDAAAVLANHLGPKTRLV 158 (390)
T ss_dssp HHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHC------------CEEEEECCGGGSSSSCHHHHHHTTCCTTEEEE
T ss_pred HHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhC------------cEEEEEcCCCCCCccchHHHHHHhcCCCceEE
Confidence 7 5666 78999999999999997654 34556 47778887532222222 222 2578999
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHH----HcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccc
Q 045431 210 FFCSPNNPTGAAATREQLTRLVQFAK----DNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVR 285 (433)
Q Consensus 210 ~l~~p~nPtG~~~~~~~~~~i~~~a~----~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r 285 (433)
++++|+||||.+++ +++|.++|+ +||+++|+|++|+... .+..+.. .+..++++|+||++. +|.+
T Consensus 159 ~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~li~Dea~~~g~---~~~~~~~----~~~d~~~~s~~K~~~-~~~g 227 (390)
T 1elu_A 159 ILSHLLWNTGQVLP---LAEIMAVCRRHQGNYPVRVLVDGAQSAGS---LPLDFSR----LEVDYYAFTGHKWFA-GPAG 227 (390)
T ss_dssp EEESBCTTTCCBCC---HHHHHHHHHHCCSSSCCEEEEECTTTBTT---BCCCTTT----SCCSEEEEESSSTTC-CCTT
T ss_pred EEeccccCCceecC---HHHHHHHHhhhhhhcCcEEEEEcccccCC---cCCChhh----cCCCEEEcccccccc-CCCc
Confidence 99999999999999 788999999 9999999999998421 1222211 234588999999553 6778
Q ss_pred eeeeeccccccccCCcchhHHHH---------------HHHhhccCCCcHHHHHHHHHhcCcCCh-hHHHHHHHHHHHHH
Q 045431 286 LGWTVIPKELLFSDGFPVAKDFN---------------RIVCTCFNGASNISQAGGLACLSPEGF-KAVHEVIGFYKENT 349 (433)
Q Consensus 286 ~G~l~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~ 349 (433)
+||++++++++..-.+... .+. ........+.+.+.+.++.++++.... .+++++++++++++
T Consensus 228 ~G~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~ 306 (390)
T 1elu_A 228 VGGLYIHGDCLGEINPTYV-GWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRS 306 (390)
T ss_dssp CEEEEECTTTGGGCCCCSC-CTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred eEEEEECHHhHhhcCCccc-cCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999887522111000 000 001112234566666655555442111 24688899999999
Q ss_pred HHHHHHHhhc-CCeeecC--CCccEEEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHH
Q 045431 350 DIIVETFNSL-GFKVYGG--KNAPYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLE 423 (433)
Q Consensus 350 ~~l~~~l~~~-g~~~~~~--~~g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~ 423 (433)
+.+.+.|+++ |+.+..| ..+.+++++++ +.+..++...+. ++||.+.+|. +++++||++ +.+++++++
T Consensus 307 ~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~~~-----~~~~iRis~~~~~~~~~i~~ 380 (390)
T 1elu_A 307 EFLWRGLNQLPHVHCLATSAPQAGLVSFTVDSPLGHRAIVQKLE-EQRIYLRTIA-----DPDCIRACCHYITDEEEINH 380 (390)
T ss_dssp HHHHHHHHHSTTEEESCSSCCSSSEEEEEECSSSCHHHHHHHHH-HTTEECEEET-----TTTEEEEECCTTCCHHHHHH
T ss_pred HHHHHHHHhcCCcEEecCccccccEEEEEcCCCCCHHHHHHHHH-HCCEEEEecC-----CCCeEEEecccCCCHHHHHH
Confidence 9999999998 8887743 34556666886 456667777775 5599999875 357999996 468999999
Q ss_pred HHHHHHHh
Q 045431 424 ACKRFKHL 431 (433)
Q Consensus 424 ~l~~l~~~ 431 (433)
++++|+++
T Consensus 381 ~~~~l~~~ 388 (390)
T 1elu_A 381 LLARLADF 388 (390)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHhh
Confidence 99999865
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-32 Score=261.44 Aligned_cols=338 Identities=12% Similarity=0.084 Sum_probs=233.8
Q ss_pred CCCCceEEecCC---CCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChH
Q 045431 60 YPDAEVISLGIG---DTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAK 136 (433)
Q Consensus 60 ~~~~~~i~l~~g---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~ 136 (433)
.++...+|++.+ .+--..++.+.+++.+++.+.. .....| +.....++++.+++++ + .++|++|+|++
T Consensus 36 ~~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~--~~~~~~-~~~~~~~l~~~la~~~----~--~~~v~~~~gg~ 106 (406)
T 4adb_A 36 QQGKEYIDFAGGIAVNALGHAHPELREALNEQASKFW--HTGNGY-TNEPVLRLAKKLIDAT----F--ADRVFFCNSGA 106 (406)
T ss_dssp TTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCS--CCCTTS-CCHHHHHHHHHHHHHS----S--CSEEEEESSHH
T ss_pred CCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhcc--cccCCc-CCHHHHHHHHHHHhhC----C--CCeEEEeCcHH
Confidence 456678999887 3322358899999999886532 111233 3334556666666654 4 45999999999
Q ss_pred HHHHH-HHHhcC-------CC-CEEEEeCCCChhhhhhHHHhCCccccc-ccccccceEEEeecCccCCcccCCCCCCCc
Q 045431 137 CDISR-LQIVFG-------SN-VTMAVQDPSYPAYVDSSVIMGQTGEFQ-KDAEKYGKIEYMRCTAENGFFPDLSTVART 206 (433)
Q Consensus 137 ~al~~-l~~l~~-------~g-d~Vl~~~p~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (433)
+++.+ +..++. +| |.|++++|+|+++.......+...++. .......++..++.++...+...+ .+++
T Consensus 107 ~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l--~~~~ 184 (406)
T 4adb_A 107 EANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDINSASALI--DDST 184 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTTCHHHHHTTC--STTE
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCCcHHHHHHHh--cCCe
Confidence 99997 455543 55 999999999999876666666533311 111111244445543211111111 2578
Q ss_pred cEEEEcCCCCccccCC--CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccccc
Q 045431 207 DIIFFCSPNNPTGAAA--TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGV 284 (433)
Q Consensus 207 ~~i~l~~p~nPtG~~~--~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~ 284 (433)
++|+++ |+||||.++ +.+++++|+++|++||++||+||+|+++.+.+.+.+....+. ..+++ ||||.++ +|+
T Consensus 185 ~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~d~~---t~sK~~~-~G~ 258 (406)
T 4adb_A 185 CAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGV-TPDLL---TTAKALG-GGF 258 (406)
T ss_dssp EEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTC-CCSEE---EECGGGG-TTS
T ss_pred EEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCC-CCCEE---Eechhhc-CCC
Confidence 888877 999999988 999999999999999999999999998766655443333322 22333 7899998 999
Q ss_pred ceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcC----
Q 045431 285 RLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLG---- 360 (433)
Q Consensus 285 r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g---- 360 (433)
|+||++++++++ +.+.........+.+.+.|.++.++++.... ++..++++++++++.+.|++.+
T Consensus 259 r~G~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~ 327 (406)
T 4adb_A 259 PVGALLATEECA--------RVMTVGTHGTTYGGNPLASAVAGKVLELINT---PEMLNGVKQRHDWFVERLNTINHRYG 327 (406)
T ss_dssp CCEEEEECHHHH--------HTCCTTSSCCSSTTCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CeEEEEEcHHHH--------hhhccCCcCCCCCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999998875 3333333444566889999988888763222 5677788888888888887752
Q ss_pred CeeecCCCccEEEEECCCC---ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 361 FKVYGGKNAPYVWVQFPGR---SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 361 ~~~~~~~~g~~~~~~~~~~---~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
.....+..|.++|+.++.. ...++...+.++ ||.+.|+. ++++|++ +..+++++++++++|++++
T Consensus 328 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~------~~~iRi~~~~~~~~e~i~~~~~~l~~~l 397 (406)
T 4adb_A 328 LFSEVRGLGLLIGCVLNADYAGQAKQISQEAAKA-GVMVLIAG------GNVVRFAPALNVSEEEVTTGLDRFAAAC 397 (406)
T ss_dssp CEEEEEEETTEEEEEECTTTTTCHHHHHHHHHHT-TEECEESS------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEEEEEEEEeCCcHHHHHHHHHHHHHC-CcEEeecC------CCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 1111123578899998753 466777777665 99999853 5799996 5678999999999999875
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-31 Score=258.18 Aligned_cols=331 Identities=13% Similarity=0.049 Sum_probs=230.5
Q ss_pred ecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCC----CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-H
Q 045431 68 LGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA----EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-L 142 (433)
Q Consensus 68 l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~----~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l 142 (433)
|+.+.+. ++|+.+.+++.+.+..... .....|.. ..+..++++.+++++ ++++++|++|+|+++++.+ +
T Consensus 4 ld~~~~~-~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~la~~~----g~~~~~v~~~~g~t~a~~~~~ 77 (382)
T 4eb5_A 4 FDYTSAK-PVDERILEAMLPYMTESFG-NPSSVHSYGFKAREAVQEAREKVAKLV----NGGGGTVVFTSGATEANNLAI 77 (382)
T ss_dssp CBTTTCC-CCCHHHHHHHHHHHHTSCC-CTTCSSHHHHHHHHHHHHHHHHHHHHH----TCTTEEEEEESSHHHHHHHHH
T ss_pred eccCCCC-CCCHHHHHHHHHHHHhccC-CCCCCcHHHHHHHHHHHHHHHHHHHHh----CCCCCeEEEcCchHHHHHHHH
Confidence 4444433 6889999999998864211 11112421 235678888888887 7788899999999999997 5
Q ss_pred HHhc----CCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEEEEcCCC
Q 045431 143 QIVF----GSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIFFCSPN 215 (433)
Q Consensus 143 ~~l~----~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~~p~ 215 (433)
..+. ++||+|++++|+|+++...+..+...| .+++.++.+.++.++.+ +++ .+++++|++++|+
T Consensus 78 ~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g---------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~ 148 (382)
T 4eb5_A 78 IGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQG---------FEVEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHAN 148 (382)
T ss_dssp HHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTT---------CEEEEECBCTTSCBCHHHHHHHCCTTEEEEECCSBC
T ss_pred HHHHhhccCCCCEEEECCCcchHHHHHHHHHHhCC---------cEEEEeccCCCCccCHHHHHHHhcCCCeEEEEeccC
Confidence 6666 899999999999999877776543222 37888888654322222 221 2478899889999
Q ss_pred CccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccc
Q 045431 216 NPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKEL 295 (433)
Q Consensus 216 nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~ 295 (433)
||||.+++ +++|.++|++||++ |+|++|+.. ..+.++... +.+++++|+||++|++| +||++++++.
T Consensus 149 nptG~~~~---l~~i~~l~~~~~~~-i~D~a~~~g---~~~~~~~~~----~~di~~~s~sK~~g~~g--~G~~~~~~~~ 215 (382)
T 4eb5_A 149 NEIGTIQP---VEEISEVLAGKAAL-HIDATASVG---QIEVDVEKI----GADMLTISSNDIYGPKG--VGALWIRKEA 215 (382)
T ss_dssp TTTCBBCC---HHHHHHHHTTSSEE-EEECTTTBT---TBCCCHHHH----TCSEEEEETGGGTCCSS--CEEEEEETTC
T ss_pred CCccccCC---HHHHHHHHHHCCCE-EEEcchhcC---CcccCcccc----CCCEEEeehHHhcCCCc--eEEEEEcccc
Confidence 99999999 68899999999999 999999831 112233222 23588999999987556 7999988774
Q ss_pred -cccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCC---cc
Q 045431 296 -LFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKN---AP 370 (433)
Q Consensus 296 -~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~---g~ 370 (433)
+.... ..............+...+.++.++++.. .+++++++++++++++.+.+.|+++ |+.+..+.+ +.
T Consensus 216 ~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 290 (382)
T 4eb5_A 216 KLQPVI----LGGGQENGLRSGSENVPSIVGFGKAAEIT-AMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPN 290 (382)
T ss_dssp CCCCSS----CSSCTGGGTSCSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTT
T ss_pred ccCcee----cCCCccccccCCCccHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCC
Confidence 21100 00000011122334555555555555421 1356888899999999999999987 887766542 56
Q ss_pred EEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCC-----------------CCCeEEEeec--cChhHHHHHHHHHHHh
Q 045431 371 YVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPG-----------------GEGFIRVSAF--GHRGNVLEACKRFKHL 431 (433)
Q Consensus 371 ~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~-----------------~~~~iRi~~~--~~~~~l~~~l~~l~~~ 431 (433)
++|+.+++.+..++...+.+ +||.+.+|..|... +++++||++. .+++++++++++|+++
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 369 (382)
T 4eb5_A 291 NVNVRFSYIEGESIVLSLDM-AGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGV 369 (382)
T ss_dssp EEEEEETTSCHHHHHHHHHH-HTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred EEEEEeCCcCHHHHHHHHHH-CCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 78888886666777777654 59999999865432 2579999975 5899999999999887
Q ss_pred h
Q 045431 432 Y 432 (433)
Q Consensus 432 l 432 (433)
+
T Consensus 370 ~ 370 (382)
T 4eb5_A 370 I 370 (382)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=265.53 Aligned_cols=337 Identities=12% Similarity=0.123 Sum_probs=227.8
Q ss_pred CCCceEEecCC---CCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHH
Q 045431 61 PDAEVISLGIG---DTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 61 ~~~~~i~l~~g---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~ 137 (433)
++...+||+.+ .+--..++.+.+++.+++..... ....| +.....++++.+++++ + +++|++|+|+++
T Consensus 38 ~g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~--~~~~~-~~~~~~~l~~~la~~~----g--~~~v~~~~gg~~ 108 (397)
T 2ord_A 38 KGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIH--CSNLF-WNRPQMELAELLSKNT----F--GGKVFFANTGTE 108 (397)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCSC--CCTTS-EEHHHHHHHHHHHHTT----T--SCEEEEESSHHH
T ss_pred CCCEEEECCccccccccCCCCHHHHHHHHHHHHhccc--Ccccc-CCHHHHHHHHHHHHhc----C--CCeEEEeCCHHH
Confidence 45568999877 33223678999999998875421 11123 2233455555555553 4 589999999999
Q ss_pred HHHH-HHHhcC------C-CCEEEEeCCCChhhhh-hHHHhCCcccccccccccceEEEeecCccCCcccCCCCCCCccE
Q 045431 138 DISR-LQIVFG------S-NVTMAVQDPSYPAYVD-SSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDI 208 (433)
Q Consensus 138 al~~-l~~l~~------~-gd~Vl~~~p~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (433)
++.+ +..+.. + ++.|++.+|+|++... .+...|...+...+......+..++.++...+...+ .+++++
T Consensus 109 a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l--~~~~~~ 186 (397)
T 2ord_A 109 ANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFNNVEDLRRKM--SEDVCA 186 (397)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECTTCHHHHHHHC--CTTEEE
T ss_pred HHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecCCCHHHHHHHh--hcCeEE
Confidence 9987 444432 5 4789999999976544 666666432110011111125555543211111111 257899
Q ss_pred EEEcCCCCcccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccccccee
Q 045431 209 IFFCSPNNPTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLG 287 (433)
Q Consensus 209 i~l~~p~nPtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G 287 (433)
|++++||||||. +++.+++++|+++|++||+++|+||+|+++.+.+.+.++..++...| ++ ||||.++ +|+|+|
T Consensus 187 v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d-~~---s~sK~~~-~G~r~G 261 (397)
T 2ord_A 187 VFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPD-VL---TTAKGLG-GGVPIG 261 (397)
T ss_dssp EEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCS-EE---EECGGGG-TTSCCE
T ss_pred EEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCC-ee---eeccccC-CCcCeE
Confidence 999999999999 99999999999999999999999999998766554443333332233 22 8899998 999999
Q ss_pred eeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc--CCeee-
Q 045431 288 WTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL--GFKVY- 364 (433)
Q Consensus 288 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g~~~~- 364 (433)
|++++++++ . .. ..........+.+.|.++.++++.... ++++++++++++.+.+.|++. ++...
T Consensus 262 ~~~~~~~~~-~-l~-------~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 329 (397)
T 2ord_A 262 AVIVNERAN-V-LE-------PGDHGTTFGGNPLACRAGVTVIKELTK---EGFLEEVEEKGNYLMKKLQEMKEEYDVVA 329 (397)
T ss_dssp EEEECSTTC-C-CC-------TTSSCCSSTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHCTTEE
T ss_pred EEEEchHhc-c-cC-------CCCcCCCCCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHhCCceE
Confidence 999998863 2 11 111223445788899888887763221 456778888888888888775 33321
Q ss_pred -cCCCccEEEEECCC-CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 365 -GGKNAPYVWVQFPG-RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 365 -~~~~g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
.+..|.++|++++. .+..++...+.+ +||.+.||. ++++||+ +..+++++++++++|++++
T Consensus 330 ~~~~~g~~~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~------~~~iRis~~~~~~~e~i~~~~~~l~~~l 394 (397)
T 2ord_A 330 DVRGMGLMIGIQFREEVSNREVATKCFE-NKLLVVPAG------NNTIRFLPPLTVEYGEIDLAVETLKKVL 394 (397)
T ss_dssp EEEEETTEEEEEECTTSCHHHHHHHHHH-TTEECEEET------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEeEEEEEEECChHHHHHHHHHHHH-CCCEEccCC------CCEEEEECCcCCCHHHHHHHHHHHHHHH
Confidence 12357889999874 346677777766 599999872 5789999 4569999999999999875
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-31 Score=256.51 Aligned_cols=324 Identities=12% Similarity=0.025 Sum_probs=229.2
Q ss_pred CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCC------
Q 045431 76 PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGS------ 148 (433)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~------ 148 (433)
++++.+.+++.+.+... ...|....+..++++++++++.+.+++++++|++|+|+++++.+ +..++.+
T Consensus 41 ~~~~~v~~a~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~ 115 (397)
T 3f9t_A 41 NVLPITRKIVDIFLETN-----LGDPGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRR 115 (397)
T ss_dssp CCCTHHHHHHHHHTTCC-----TTSGGGBHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhhc-----CCCcccChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhh
Confidence 45678888888877532 11221112556777777777766668889999999999999987 5666555
Q ss_pred -------CCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CC-CccEEEEcCCCCc
Q 045431 149 -------NVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VA-RTDIIFFCSPNNP 217 (433)
Q Consensus 149 -------gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~-~~~~i~l~~p~nP 217 (433)
||+|++++|+|+++...++..| .+++.++.+.+..++.+ +++ .+ +++++++++|+||
T Consensus 116 ~~~~~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~np 183 (397)
T 3f9t_A 116 KGLSKNEHPKIIVPITAHFSFEKGREMMD------------LEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTE 183 (397)
T ss_dssp TTCCCCSSCEEEEETTCCTHHHHHHHHHT------------CEEEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTT
T ss_pred hcccCCCCeEEEECCcchhHHHHHHHHcC------------ceeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCCCC
Confidence 9999999999999999999998 47888888754322222 221 23 7899999999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCC--c------ccccCCCCcceEEEecccccccccccceeee
Q 045431 218 TGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPR--S------IFEIPGAKEVAIETSSFSKYAGFTGVRLGWT 289 (433)
Q Consensus 218 tG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~--~------~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l 289 (433)
||.+.+ +++|.++|++||+++|+||+|+.+....... . ...+. . +..+++.|++|+++ +|+|+|++
T Consensus 184 tG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~s~~K~~~-~~~~~g~~ 257 (397)
T 3f9t_A 184 LGTIDN---IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFS-L-GVDSITIDPHKMGH-CPIPSGGI 257 (397)
T ss_dssp TCCBCC---HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGG-G-TCSEEECCTTTTTC-CCSSCEEE
T ss_pred CCCCCC---HHHHHHHHHHhCCeEEEEccccchhhhhccccccccccccccccc-c-cCCeEEEccccccC-CCCCceEE
Confidence 999988 7889999999999999999998754321110 0 11111 1 34588999999885 88899999
Q ss_pred eccccccccCCcchhHHHHHH----HhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeec
Q 045431 290 VIPKELLFSDGFPVAKDFNRI----VCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYG 365 (433)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~ 365 (433)
+++++.+.+........+... ...+..+.+.+++.++.+.+. ..++++..++++++++.+.+.|+++|+.+..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 334 (397)
T 3f9t_A 258 LFKDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLG---REGQRKIVNECMENTLYLYKKLKENNFKPVI 334 (397)
T ss_dssp EESSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTTCCBSS
T ss_pred EEeCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEc
Confidence 988776421110000000000 001112235666776666653 2456778888889999999999998888766
Q ss_pred CCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec--cChhHHHHHHHHHHHhhC
Q 045431 366 GKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF--GHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 366 ~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~l~~~l~~l~~~l~ 433 (433)
+..+.++|+.++. ..++...+.++ ||.+.+|.. ++++||++. .+++++++++++|+++++
T Consensus 335 ~~~~~~~~~~~~~--~~~~~~~l~~~-gi~v~~~~~-----~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 335 EPILNIVAIEDED--YKEVCKKLRDR-GIYVSVCNC-----VKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp CCSSSEEEEECTT--HHHHHHHHHHT-TCBCEECSS-----SSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred CCCccEEEEEeCC--HHHHHHHHHhC-CeEEeccCC-----CCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 6678888998874 55666666655 999998753 479999975 589999999999998864
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-32 Score=261.48 Aligned_cols=317 Identities=14% Similarity=0.133 Sum_probs=228.8
Q ss_pred CCCCCCChHHHHHHHHHHHhhcccCCCCCCCCC-C-CCCHHHHHHHHHHHhccCCCCCC-cEEEcCChHHHHHH-HHHhc
Q 045431 71 GDTTEPIPEVITSALAKRSYALSTQEGYSGYGA-E-QGEKPLRAAIASTFYKDLGIEEG-DIFVSDGAKCDISR-LQIVF 146 (433)
Q Consensus 71 g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~-~-~g~~~lr~~la~~l~~~~~~~~~-~i~~~~G~~~al~~-l~~l~ 146 (433)
+.++.++++.+.+++.+.+. ..|.+ . ....++|+++++++ +.+++ +|++|+|+++++.+ +..++
T Consensus 23 ~~~p~~~~~~v~~a~~~~~~--------~~~~~~~~~~~~~l~~~la~~~----~~~~~~~v~~~~g~t~al~~~~~~~~ 90 (396)
T 2ch1_A 23 GPGPSNCSKRVLTAMTNTVL--------SNFHAELFRTMDEVKDGLRYIF----QTENRATMCVSGSAHAGMEAMLSNLL 90 (396)
T ss_dssp SSSSCCCCHHHHHHTTSCCC--------CTTCHHHHHHHHHHHHHHHHHH----TCCCSCEEEESSCHHHHHHHHHHHHC
T ss_pred cCCCCCCCHHHHHHhccccc--------cCCChhHHHHHHHHHHHHHHHh----CCCCCcEEEECCcHHHHHHHHHHHhc
Confidence 34445677887777665332 12433 1 23789999999998 77777 89999999999997 57778
Q ss_pred CCCCEEEEeCCCChhhh--hhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CC-CccEEEEcCCCCcccc
Q 045431 147 GSNVTMAVQDPSYPAYV--DSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VA-RTDIIFFCSPNNPTGA 220 (433)
Q Consensus 147 ~~gd~Vl~~~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~-~~~~i~l~~p~nPtG~ 220 (433)
++||+|++++|+|+++. ..++..| .+++.++.+.+...+.+ +++ .+ ++++|++++|+||||.
T Consensus 91 ~~gd~vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~ 158 (396)
T 2ch1_A 91 EEGDRVLIAVNGIWAERAVEMSERYG------------ADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGL 158 (396)
T ss_dssp CTTCEEEEEESSHHHHHHHHHHHHTT------------CEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTE
T ss_pred CCCCeEEEEcCCcccHHHHHHHHHcC------------CceEEecCCCCCCCCHHHHHHHHHhCCCCEEEEECCCCCCce
Confidence 99999999999999984 3566677 47888887643222221 221 13 6899999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCC
Q 045431 221 AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDG 300 (433)
Q Consensus 221 ~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~ 300 (433)
+++ +++|.++|++||++||+||+|+. . ..+.++..+ +..+++.|++|+++ ++.++|+++++++++
T Consensus 159 ~~~---~~~i~~l~~~~~~~li~Dea~~~-g--~~~~~~~~~----~~d~~~~s~~K~~~-~~~g~g~~~~~~~~~---- 223 (396)
T 2ch1_A 159 LQP---LEGVGQICHQHDCLLIVDAVASL-C--GVPFYMDKW----EIDAVYTGAQKVLG-APPGITPISISPKAL---- 223 (396)
T ss_dssp ECC---CTTHHHHHHHTTCEEEEECTTTB-T--TBCCCTTTT----TCCEEECCCC-CCC-CCSSCEEEEECHHHH----
T ss_pred ecC---HHHHHHHHHHcCCEEEEEccccc-c--CCccchhhc----CcCEEEEcCCcccc-CCCCeEEEEECHHHH----
Confidence 999 78899999999999999999983 2 112222222 12367789999875 555679999988764
Q ss_pred cchhHHHHH-----------------HH------hhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHh
Q 045431 301 FPVAKDFNR-----------------IV------CTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFN 357 (433)
Q Consensus 301 ~~~~~~~~~-----------------~~------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~ 357 (433)
+.+.. .. .....+.+...|.++.++++.....++++.+++++++++++.+.|+
T Consensus 224 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~ 299 (396)
T 2ch1_A 224 ----DVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLG 299 (396)
T ss_dssp ----HHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 22211 00 1122346777888777777642224578889999999999999999
Q ss_pred hcCCeeecCCC----ccEEEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee-c--cChhHHHHHHHHHH
Q 045431 358 SLGFKVYGGKN----APYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA-F--GHRGNVLEACKRFK 429 (433)
Q Consensus 358 ~~g~~~~~~~~----g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~-~--~~~~~l~~~l~~l~ 429 (433)
++|+.+..+.+ +.++|+.++ +.+..++...|++++||.+.+|..+. .++++||++ . .+++++++++++|+
T Consensus 300 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~--~~~~iRi~~~~~~~~~e~i~~~~~~l~ 377 (396)
T 2ch1_A 300 KMGLDIFVKDPRHRLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPT--FGKAWRVGIMGECSTVQKIQFYLYGFK 377 (396)
T ss_dssp HHTCCBSSCSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCBCCBCCCGGG--TTTEEEEECCGGGCSHHHHHHHHHHHH
T ss_pred HCCCeeccCCccccCCceEEEEcCCCCCHHHHHHHHHHhCCEEEecCcccc--CCCEEEEECCCCcCCHHHHHHHHHHHH
Confidence 88888776543 248899987 55677788887766799999987532 457899997 3 37899999999999
Q ss_pred Hhh
Q 045431 430 HLY 432 (433)
Q Consensus 430 ~~l 432 (433)
+++
T Consensus 378 ~~l 380 (396)
T 2ch1_A 378 ESL 380 (396)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-32 Score=259.40 Aligned_cols=322 Identities=8% Similarity=0.027 Sum_probs=226.9
Q ss_pred EEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHH
Q 045431 66 ISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQI 144 (433)
Q Consensus 66 i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~ 144 (433)
+.|..+.+ .+.|+.+.+++.+.+.. ...|....+..++|+.+++++ ++++++|++|+|+++++.+ +..
T Consensus 10 ~yl~~~~~-~~~~~~v~~a~~~~~~~------~~~~~~~~~~~~l~~~la~~~----g~~~~~v~~t~g~t~a~~~~~~~ 78 (392)
T 2z9v_A 10 VITLTAGP-VNAYPEVLRGLGRTVLY------DYDPAFQLLYEKVVDKAQKAM----RLSNKPVILHGEPVLGLEAAAAS 78 (392)
T ss_dssp SEECSSSC-CCCCHHHHHHTTSCCCC------TTSHHHHHHHHHHHHHHHHHT----TCSSCCEEESSCTHHHHHHHHHH
T ss_pred ceeecCCC-cCCCHHHHHHHhccccc------cccHHHHHHHHHHHHHHHHHh----CCCCCEEEEeCCchHHHHHHHHH
Confidence 44555443 46788888887765431 111222345678899999987 7778999999999999997 567
Q ss_pred hcCCCCEEEEeCCCChhhh--hhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC----CCCccEEEEcCCCCc
Q 045431 145 VFGSNVTMAVQDPSYPAYV--DSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST----VARTDIIFFCSPNNP 217 (433)
Q Consensus 145 l~~~gd~Vl~~~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~i~l~~p~nP 217 (433)
++++||+|++++|+|+++. ..++..| .+++.++.+.++.++.+ +++ .+++++|++++|+||
T Consensus 79 ~~~~gd~Vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~np 146 (392)
T 2z9v_A 79 LISPDDVVLNLASGVYGKGFGYWAKRYS------------PHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCHHDTP 146 (392)
T ss_dssp HCCTTCCEEEEESSHHHHHHHHHHHHHC------------SCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEEGG
T ss_pred hcCCCCEEEEecCCcccHHHHHHHHHcC------------CceEEeeCCCCCCCCHHHHHHHHhcCCCCcEEEEeccCCC
Confidence 7899999999999998763 3334456 47778887654322222 221 257899999999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccc
Q 045431 218 TGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLF 297 (433)
Q Consensus 218 tG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~ 297 (433)
||.+++ +++|.++|++||++||+|++|+... .+.++... +..++++|+||+++ ++.++||++++++++
T Consensus 147 tG~~~~---l~~i~~l~~~~~~~li~D~a~~~g~---~~~~~~~~----~~d~~~~s~sK~~~-~~~g~G~l~~~~~~~- 214 (392)
T 2z9v_A 147 SGTINP---IDAIGALVSAHGAYLIVDAVSSFGG---MKTHPEDC----KADIYVTGPNKCLG-APPGLTMMGVSERAW- 214 (392)
T ss_dssp GTEECC---HHHHHHHHHHTTCEEEEECTTTBTT---BSCCGGGG----TCSEEEECSSSTTC-CCSCCEEEEECHHHH-
T ss_pred Cceecc---HHHHHHHHHHcCCeEEEEcccccCC---cccccccc----cceEEEecCccccc-CCCceeEEEECHHHH-
Confidence 999998 7899999999999999999998321 12223222 23588999999664 333469999998874
Q ss_pred cCCcchhHHHHHHH--------------------hhccCCCcHHHHHHHHHhcCcCChhH-HHHHHHHHHHHHHHHHHHH
Q 045431 298 SDGFPVAKDFNRIV--------------------CTCFNGASNISQAGGLACLSPEGFKA-VHEVIGFYKENTDIIVETF 356 (433)
Q Consensus 298 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~q~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~l 356 (433)
+.+.... .......+...+.++.++++.. ..+ +++++++++++++++.+.|
T Consensus 215 -------~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~-~~~g~~~~~~~~~~~~~~l~~~L 286 (392)
T 2z9v_A 215 -------AKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLY-LNEGPEAVWARHALTAKAMRAGV 286 (392)
T ss_dssp -------HHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHH-HHHCHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHH
Confidence 3332110 1112234555555555555421 122 6788899999999999999
Q ss_pred hhcCCeeecCC----CccEEEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee---ccChhHHHHHHHHH
Q 045431 357 NSLGFKVYGGK----NAPYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA---FGHRGNVLEACKRF 428 (433)
Q Consensus 357 ~~~g~~~~~~~----~g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~---~~~~~~l~~~l~~l 428 (433)
+++|+.+..|. .+.++|+.++ +.+..++...|.+++||.+.+|..+. .++++||++ +.+++++++++++|
T Consensus 287 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~~--~~~~lRi~~~~~~~~~~~i~~~~~~l 364 (392)
T 2z9v_A 287 TAMGLSVWAASDSIASPTTTAVRTPDGVDEKALRQAARARYGVVFSSGRGET--LGKLTRIGHMGPTAQPIYAIAALTAL 364 (392)
T ss_dssp HHTTCCBSSSSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGG--TTTEEEEECCGGGCSHHHHHHHHHHH
T ss_pred HHcCCeeccCCccccCCceEEEECCCCCCHHHHHHHHHhcCCEEEecCCCCC--CCCeEEEeCcccccCHHHHHHHHHHH
Confidence 88888776533 4678899997 55667777777665699999987542 367999995 36899999999999
Q ss_pred HHhh
Q 045431 429 KHLY 432 (433)
Q Consensus 429 ~~~l 432 (433)
++++
T Consensus 365 ~~~~ 368 (392)
T 2z9v_A 365 GGAM 368 (392)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=4e-32 Score=261.11 Aligned_cols=314 Identities=10% Similarity=0.095 Sum_probs=223.2
Q ss_pred CCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCC--CcEEEcCChHHHHHHHHHhcCCCCE
Q 045431 74 TEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEE--GDIFVSDGAKCDISRLQIVFGSNVT 151 (433)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~--~~i~~~~G~~~al~~l~~l~~~gd~ 151 (433)
+.++++.+.+++.+.+.. ...+.......++++.+++++ ++++ ++|++|+|+++++.++..++++||+
T Consensus 10 p~~~~~~v~~a~~~~~~~------~~~~~~~~~~~~~~~~la~~~----~~~~~~~~v~~~~g~t~al~~~~~~~~~gd~ 79 (384)
T 3zrp_A 10 PTTIKEDVLVAGLENNVG------FTSKEFVEALAYSLKGLRYVM----GASKNYQPLIIPGGGTSAMESVTSLLKPNDK 79 (384)
T ss_dssp CSCCCHHHHHHTTCCSCC------TTSHHHHHHHHHHHHHHHHHH----TCCTTSEEEEEESCHHHHHHHGGGGCCTTCE
T ss_pred CCCCCHHHHHHhhccccc------cccHHHHHHHHHHHHHHHHHh----CCCCCCcEEEEcCCcHHHHHHHHhhcCCCCE
Confidence 356788888777664421 111111335567777777776 7776 8999999999999944677899999
Q ss_pred EEEeCCCChh--hhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CC-CccEEEEcCCCCccccCCCHH
Q 045431 152 MAVQDPSYPA--YVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VA-RTDIIFFCSPNNPTGAAATRE 225 (433)
Q Consensus 152 Vl~~~p~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~-~~~~i~l~~p~nPtG~~~~~~ 225 (433)
|++++|+|++ +...++..| .+++.++.+.++.++.+ +++ .+ ++++|++++|+||||.+++
T Consensus 80 vi~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~-- 145 (384)
T 3zrp_A 80 ILVVSNGVFGDRWEQIFKRYP------------VNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREP-- 145 (384)
T ss_dssp EEEECSSHHHHHHHHHHTTSS------------CEEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECC--
T ss_pred EEEecCCcchHHHHHHHHHcC------------CcEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECc--
Confidence 9999999976 344444555 47888888754322222 221 12 6899999999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhH
Q 045431 226 QLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAK 305 (433)
Q Consensus 226 ~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~ 305 (433)
+++|.++|++||+++|+|++|+.... +.++.. .+..+++.|+||+++ ++.++||++++++++ +
T Consensus 146 -l~~i~~l~~~~~~~li~D~a~~~~~~---~~~~~~----~~~d~~~~s~~K~~~-~~~g~g~~~~~~~~~--------~ 208 (384)
T 3zrp_A 146 -VKDVINKIRKYVELIVVDGVSSVGAE---EVKAEE----WNVDVYLTASQKALG-SAAGLGLLLLSPKAL--------S 208 (384)
T ss_dssp -HHHHHHHHGGGEEEEEEECTTTTTTS---CCCTTT----TTCSEEEEETTSTTC-CCSSEEEEEECHHHH--------H
T ss_pred -HHHHHHHHHhcCCEEEEECcccccCc---cccccc----cCCCEEEecCccccc-CCCceEEEEECHHHH--------H
Confidence 78899999999999999999884321 222221 134589999999885 445699999998875 2
Q ss_pred HH-------------HHHHh---------hcc-CCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCe
Q 045431 306 DF-------------NRIVC---------TCF-NGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFK 362 (433)
Q Consensus 306 ~~-------------~~~~~---------~~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 362 (433)
.+ ..... ... .+.+...+.++.+++......++++++++++++++.+.+.|+++|+.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 288 (384)
T 3zrp_A 209 ILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEALGLE 288 (384)
T ss_dssp HHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence 22 11111 011 13455555555455542222336888999999999999999998888
Q ss_pred eecCC----CccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec--cChhHHHHHHHHHHHhh
Q 045431 363 VYGGK----NAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF--GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 363 ~~~~~----~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~l~~~l~~l~~~l 432 (433)
+..+. .+.++|+.+++.+..++...+.++ ||.+.+|..+.. +++||++. .+++++++++++|++++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~~~~---~~iRi~~~~~~~~e~i~~~~~~l~~~l 360 (384)
T 3zrp_A 289 IVARRPESYSNTVTGVILKVADPQKVLAGTVNE-GVEFAPGVHPAF---KYFRIGHMGWVTPNDAIIAISVIERTL 360 (384)
T ss_dssp BSCSSGGGBCSSEEEEECSSSCHHHHHHHHHTT-TCCCEECCCTTC---CEEEEECCSSCCHHHHHHHHHHHHHHH
T ss_pred EccCcccccCccEEEEECCCCCHHHHHHHHHHC-CEEEecCCCCCc---CEEEEeccccCCHHHHHHHHHHHHHHH
Confidence 77665 577889999876667777777655 999999875332 89999964 58999999999999875
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.5e-31 Score=261.26 Aligned_cols=353 Identities=12% Similarity=0.040 Sum_probs=212.2
Q ss_pred CCCCceEEecCC--CCCCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChH
Q 045431 60 YPDAEVISLGIG--DTTEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAK 136 (433)
Q Consensus 60 ~~~~~~i~l~~g--~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~ 136 (433)
.++...+|++.+ ...+. .++.+.+++.+++.+.. .|....+..++++++++++.+..+.++++|++|+|++
T Consensus 26 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~------~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ 99 (430)
T 3i4j_A 26 DAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLP------FVHGSQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGS 99 (430)
T ss_dssp TTSCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCC------CCCTTTCEEHHHHHHHHHHHHHTTCTTCEEEEESSHH
T ss_pred CCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhcc------cccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHH
Confidence 345678999876 33333 48999999999887531 2333345667777777777765577788999999999
Q ss_pred HHHHH-HHHhc--------CCCCEEEEeCCCChhhhhhHHHhCCccccc-ccccccc--eEEEeecCccC---Ccc-cCC
Q 045431 137 CDISR-LQIVF--------GSNVTMAVQDPSYPAYVDSSVIMGQTGEFQ-KDAEKYG--KIEYMRCTAEN---GFF-PDL 200 (433)
Q Consensus 137 ~al~~-l~~l~--------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~-~~~~~~~--~~~~~~~~~~~---~~~-~~~ 200 (433)
+++.. +..++ .+++.|++.+|+|+++......++....+. ....... .+..++.+... ... .++
T Consensus 100 ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 179 (430)
T 3i4j_A 100 EATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGL 179 (430)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHH
Confidence 99987 44444 457899999999998876555444321110 0000000 22233332110 000 112
Q ss_pred CC-----CCCccEEEEcCC-CC-cccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEE
Q 045431 201 ST-----VARTDIIFFCSP-NN-PTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIET 272 (433)
Q Consensus 201 ~~-----~~~~~~i~l~~p-~n-PtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i 272 (433)
++ .++..++++++| +| ++|. +++.+++++|.++|++||+++|+||+|.++...+.......+++.... +
T Consensus 180 e~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~~~~~~~d---i 256 (430)
T 3i4j_A 180 RALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWSGVTPD---I 256 (430)
T ss_dssp HHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTTCCCS---E
T ss_pred HHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhhhhcCCCCc---E
Confidence 21 113344555666 56 8886 668889999999999999999999999988766544333333122222 3
Q ss_pred ecccccccccc-cceeeeeccccccccCCcchhHHHHHH----HhhccCCCcHHHHHHHHHhcCcCCh-hHHHHHHHHHH
Q 045431 273 SSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNRI----VCTCFNGASNISQAGGLACLSPEGF-KAVHEVIGFYK 346 (433)
Q Consensus 273 ~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~ 346 (433)
.+|||+++ +| +|+||++++++++ +.+... ....+.+.++++|.++.++|+.... ..+++.++..+
T Consensus 257 ~t~sK~l~-~G~~r~G~~~~~~~i~--------~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~ 327 (430)
T 3i4j_A 257 AVLGKGLA-AGYAPLAGLLAAPQVY--------ETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGA 327 (430)
T ss_dssp EEECGGGT-TTSSCCEEEEECHHHH--------HHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred EEEccccc-CCccccEEEEECHHHH--------HHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 37999998 79 9999999998885 555542 3345566899999999988873211 22344444444
Q ss_pred HHHHHHHHHHhhc-CCeeecCCCccEEEEECCCC----------ChHHHHHHHHHcCCeEecCCCC-CCCCCCCeEEEee
Q 045431 347 ENTDIIVETFNSL-GFKVYGGKNAPYVWVQFPGR----------SSWDVFSEILEKTHVVTTPGSG-FGPGGEGFIRVSA 414 (433)
Q Consensus 347 ~~~~~l~~~l~~~-g~~~~~~~~g~~~~~~~~~~----------~~~~~~~~l~~~~gi~v~~g~~-f~~~~~~~iRi~~ 414 (433)
..++.+.+.+.++ ++....+ .|+|+|+.+... ...++...+++ +||.+.|+.. +...+.+++||++
T Consensus 328 ~~~~~l~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~~~~~~~~iRi~~ 405 (430)
T 3i4j_A 328 QLLAGLQALQARFPQMMQVRG-TGLLLGVVLGDLATGQAFETPGIASRIGAAALK-RGLITYPGSGAEPNGRGDHLLLGP 405 (430)
T ss_dssp HHHHHHHHHHHHCTTEEEEEE-ETTEEEEEEC------------CHHHHHHHHHH-TTEECC-----------CEEEECC
T ss_pred HHHHHHHHHHHhCCCeEEEEE-EEEEEEEEeccccccCCCccHHHHHHHHHHHHh-CCCEEEecccccCCCCCCEEEEEC
Confidence 4444444444444 3444443 577888887521 12456666664 5999999843 2233467899996
Q ss_pred c--cChhHHHHHHHHHHHhh
Q 045431 415 F--GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 415 ~--~~~~~l~~~l~~l~~~l 432 (433)
. .+++++++++++|++++
T Consensus 406 ~~~~t~e~i~~~l~~l~~~l 425 (430)
T 3i4j_A 406 PLSITAAEVDGLLALLAGAL 425 (430)
T ss_dssp CTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 4 68999999999999876
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=2e-31 Score=253.83 Aligned_cols=327 Identities=10% Similarity=0.068 Sum_probs=229.8
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR- 141 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~- 141 (433)
+.+|+|+.+.+. ++++.+.+++.+.+. .|....|..++++++++++.+.+++++++|++|+|+++++.+
T Consensus 13 p~~i~l~~~~~~-~~~~~v~~a~~~~~~---------~~~~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~ 82 (359)
T 1svv_A 13 PKPYSFVNDYSV-GMHPKILDLMARDNM---------TQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIA 82 (359)
T ss_dssp --CEECSCSCSS-CCCHHHHHHHHHHTT---------CCCCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHH
T ss_pred CeeEEecCCCcC-CCCHHHHHHHHHHHh---------hccccccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHH
Confidence 458999997766 788999999998764 254556778899999998887557888999999999999997
Q ss_pred HHHhcCCCCEEEEeCCCChhhhh--hHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CC-------CccEE
Q 045431 142 LQIVFGSNVTMAVQDPSYPAYVD--SSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VA-------RTDII 209 (433)
Q Consensus 142 l~~l~~~gd~Vl~~~p~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~-------~~~~i 209 (433)
+..++++||+|++++|+|+++.. .++..| .+++.++.+ +..++.+ +++ .+ ++++|
T Consensus 83 ~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~-~~~~d~~~l~~~l~~~~~~~~~~~~~v 149 (359)
T 1svv_A 83 CSLALRPWEAVIATQLGHISTHETGAIEATG------------HKVVTAPCP-DGKLRVADIESALHENRSEHMVIPKLV 149 (359)
T ss_dssp HHHHCCTTEEEEEETTSHHHHSSTTHHHHTT------------CCEEEECCT-TSCCCHHHHHHHHHHSCSTTSCEEEEE
T ss_pred HHHHhCCCCEEEEcccchHHHHHHHHHhcCC------------CeeEEEeCC-CCeecHHHHHHHHHHHHhccCCCceEE
Confidence 57778999999999999999887 366777 477778765 2222211 221 12 38899
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeee
Q 045431 210 FFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWT 289 (433)
Q Consensus 210 ~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l 289 (433)
++++| ||||.+++.+++++|+++|++||+++|+||+|..+.....+.....+.-.....++..|++|..+ ...+|++
T Consensus 150 ~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~g~--~~~~g~l 226 (359)
T 1svv_A 150 YISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGG--MFGEALI 226 (359)
T ss_dssp EEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTC--SSCEEEE
T ss_pred EEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccCCC--CCceEEE
Confidence 99998 79999999999999999999999999999999554322111111110000011277889999743 3457999
Q ss_pred eccccccccCCcchhHHHHHHHh-hcc-CCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCC
Q 045431 290 VIPKELLFSDGFPVAKDFNRIVC-TCF-NGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGK 367 (433)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~ 367 (433)
+++++++ +.+..... ... ...+.....++.+++++ ..+++.+++++++++++.+.|+..|+.+..+.
T Consensus 227 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 295 (359)
T 1svv_A 227 ILNDALK--------PNARHLIKQRGALMAKGWLLGIQFEVLMKD---NLFFELGAHSNKMAAILKAGLEACGIRLAWPS 295 (359)
T ss_dssp ECSGGGC--------TTHHHHHHHTTCCCTTTHHHHHHHHHHTST---THHHHHHHHHHHHHHHHHHHHHHTTCCBSSCC
T ss_pred EEcccHH--------HHHHHHHhcCCcccccchhhHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHhccCCeEEccCC
Confidence 9988875 33443221 111 11122222223445553 23577888999999999999954588888777
Q ss_pred CccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhhC
Q 045431 368 NAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 368 ~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l~ 433 (433)
+++++|++++ .++...+++++||.+.+.. +.+++++||++ ..+++++++++++|+++++
T Consensus 296 ~~~~~~~~~~----~~~~~~l~~~~gi~v~~~~---~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 356 (359)
T 1svv_A 296 ASNQLFPILE----NTMIAELNNDFDMYTVEPL---KDGTCIMRLCTSWATEEKECHRFVEVLKRLVA 356 (359)
T ss_dssp SSSEECBEEE----HHHHHHHTTTEECEEEEEE---TTTEEEEEEECCTTCCHHHHHHHHHHHHHC--
T ss_pred ccceEEEEcC----HHHHHHHHHhcCEEEEecc---cCCCceEEEEccCcCCHHHHHHHHHHHHHHHh
Confidence 8999999875 4666676655599982210 23457899985 4689999999999998763
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.3e-31 Score=255.55 Aligned_cols=332 Identities=12% Similarity=0.046 Sum_probs=222.1
Q ss_pred ecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCC----CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-H
Q 045431 68 LGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA----EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-L 142 (433)
Q Consensus 68 l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~----~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l 142 (433)
|+.+.. .++|+.+.+++.+.+.+... .....|.. .....++++.+++++ ++++++|++|+|+++++.+ +
T Consensus 4 ld~~~~-~~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~~~~i~~~~g~~~a~~~~~ 77 (382)
T 4hvk_A 4 FDYTSA-KPVDERILEAMLPYMTESFG-NPSSVHSYGFKAREAVQEAREKVAKLV----NGGGGTVVFTSGATEANNLAI 77 (382)
T ss_dssp CBTTTC-CCCCHHHHHHHHHHHHTSCC-CTTCSSHHHHHHHHHHHHHHHHHHHHT----TCTTEEEEEESSHHHHHHHHH
T ss_pred ecCCCc-CCCCHHHHHHHHHHHHhhcC-CCcccchHHHHHHHHHHHHHHHHHHHc----CCCcCeEEEECCchHHHHHHH
Confidence 444433 36788999999998864211 01111211 112235666666665 8888999999999999997 5
Q ss_pred HHhc----CCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEEEEcCCC
Q 045431 143 QIVF----GSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIFFCSPN 215 (433)
Q Consensus 143 ~~l~----~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~~p~ 215 (433)
..++ ++||+|++++|+|+++...+..+...+ .+++.++.+.++.++.+ +++ .+++++|++++||
T Consensus 78 ~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g---------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~ 148 (382)
T 4hvk_A 78 IGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQG---------FEVEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHAN 148 (382)
T ss_dssp HHHHHHHGGGCCEEEEETTCCHHHHHHHHHHHHTT---------CEEEEECBCTTSCBCHHHHHHHCCTTEEEEECCSBC
T ss_pred HHhhhhhcCCCCEEEECCCCcHHHHHHHHHHHhcC---------CEEEEeccCCCCCcCHHHHHHHhccCceEEEEECCC
Confidence 6666 999999999999999887766652222 47888888754333222 221 3578899999999
Q ss_pred CccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccc
Q 045431 216 NPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKEL 295 (433)
Q Consensus 216 nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~ 295 (433)
||||.+++ +++|.++|++||+ +|+|++|+.... +.++... +..+++.|+||++|.+| +|+++++++.
T Consensus 149 nptG~~~~---~~~i~~l~~~~~~-li~D~a~~~~~~---~~~~~~~----~~d~~~~s~~K~~g~~g--~g~~~~~~~~ 215 (382)
T 4hvk_A 149 NEIGTIQP---VEEISEVLAGKAA-LHIDATASVGQI---EVDVEKI----GADMLTISSNDIYGPKG--VGALWIRKEA 215 (382)
T ss_dssp TTTCBBCC---HHHHHHHHSSSSE-EEEECTTTBTTB---CCCHHHH----TCSEEEEESGGGTSCTT--CEEEEEETTC
T ss_pred CCceeeCC---HHHHHHHHHHcCE-EEEEhHHhcCCC---CCCchhc----CCCEEEEeHHHhcCCCc--eEEEEEcCcc
Confidence 99999999 6789999999999 999999874211 2222222 23589999999887556 7888777654
Q ss_pred cccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCC---ccE
Q 045431 296 LFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKN---APY 371 (433)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~---g~~ 371 (433)
..... ...............+...+.++.+++. ...+++++.+++++++++.+.+.|+++ |+.+..+.. +.+
T Consensus 216 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~al~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~ 291 (382)
T 4hvk_A 216 KLQPV---ILGGGQENGLRSGSENVPSIVGFGKAAE-ITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNN 291 (382)
T ss_dssp CCCCS---SCSSCTGGGTSCSCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTE
T ss_pred CcCcc---cccCCCcCccccCCcCHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCE
Confidence 21000 0000000111223345566665555554 122567889999999999999999987 787765543 357
Q ss_pred EEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCC-----------------CCeEEEeec--cChhHHHHHHHHHHHhh
Q 045431 372 VWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGG-----------------EGFIRVSAF--GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 372 ~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~-----------------~~~iRi~~~--~~~~~l~~~l~~l~~~l 432 (433)
+++.+++.+..++...+.+ +||.+.+|..|.... ++++||++. .+++++++++++|++++
T Consensus 292 ~~~~~~~~~~~~~~~~l~~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~ 370 (382)
T 4hvk_A 292 VNVRFSYIEGESIVLSLDM-AGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVI 370 (382)
T ss_dssp EEEEETTCCHHHHHHHHHH-TTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHH-CCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 7788877677777766654 599999998876543 589999974 47899999999998875
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=4.2e-32 Score=264.90 Aligned_cols=343 Identities=9% Similarity=0.053 Sum_probs=228.5
Q ss_pred CCCceEEecCCCC--CCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHH
Q 045431 61 PDAEVISLGIGDT--TEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 61 ~~~~~i~l~~g~~--~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~ 137 (433)
++...|||+.+.+ ++. +++.+.+++.+++.+.. .....|.+..+..+|+++|++++. +..+++|++|+|+++
T Consensus 39 ~g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~l~~~la~~~~---~~~~~~v~~~~g~~~ 113 (426)
T 1sff_A 39 EGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLS--HTCFQVLAYEPYLELCEIMNQKVP---GDFAKKTLLVTTGSE 113 (426)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCS--CCCTTTEECHHHHHHHHHHHHHSS---CSSCEEEEEESSHHH
T ss_pred CCCEEEEcccChhhcccCCCCHHHHHHHHHHHHhCC--CccccccCCHHHHHHHHHHHHhCC---cccccEEEEeCchHH
Confidence 4567899987763 332 67889999999886532 112256677899999999999972 213489999999999
Q ss_pred HHHH-HH---HhcCCCCEEEEeCCCChhhhh-hHHHhCCcccc-cccccccceEEEeecCcc--C-C--ccc-CCCC---
Q 045431 138 DISR-LQ---IVFGSNVTMAVQDPSYPAYVD-SSVIMGQTGEF-QKDAEKYGKIEYMRCTAE--N-G--FFP-DLST--- 202 (433)
Q Consensus 138 al~~-l~---~l~~~gd~Vl~~~p~~~~~~~-~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~--~-~--~~~-~~~~--- 202 (433)
++.+ +. .++++| .|++.+|+|+++.. .....|....+ ...+.....++.++.+.+ + . ++. ++++
T Consensus 114 a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~ 192 (426)
T 1sff_A 114 AVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFK 192 (426)
T ss_dssp HHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHH
Confidence 9997 44 456776 89999999988654 55555532100 001111113555665421 1 1 111 1221
Q ss_pred C----CCccEEEEc-CCCCccc-cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccc
Q 045431 203 V----ARTDIIFFC-SPNNPTG-AAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFS 276 (433)
Q Consensus 203 ~----~~~~~i~l~-~p~nPtG-~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~s 276 (433)
. +++++|+++ +|+| || .+++.+++++|.++|++||++||+||+|+++.+.+....+.... ..+.+.|||
T Consensus 193 ~~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~----~~~di~s~s 267 (426)
T 1sff_A 193 NDAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMG----VAPDLTTFA 267 (426)
T ss_dssp HTCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTT----SCCSEEEEC
T ss_pred hccCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchhhhhhcC----CCCCEEEEc
Confidence 1 356676664 5678 99 88899999999999999999999999999876655332222221 123345999
Q ss_pred ccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHH
Q 045431 277 KYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETF 356 (433)
Q Consensus 277 K~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l 356 (433)
|+++ +|+|+||++++++++ +.+.......+...++++|.++.++++.... +...++++++++.+.+.|
T Consensus 268 K~~~-~GlriG~~~~~~~~~--------~~l~~~~~~~~~~~~~~~~~a~~aal~~~~~---~~~~~~~~~~~~~l~~~l 335 (426)
T 1sff_A 268 KSIA-GGFPLAGVTGRAEVM--------DAVAPGGLGGTYAGNPIACVAALEVLKVFEQ---ENLLQKANDLGQKLKDGL 335 (426)
T ss_dssp GGGG-TSSCCEEEEEEHHHH--------TTSCTTSBCCSSSSCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHH
T ss_pred cccc-CCCceEEEEEcHHHH--------hhhccCCcCcCCCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHH
Confidence 9998 599999999998875 2222222234455788999888877652111 134455666666666666
Q ss_pred hhc----C-CeeecCCCccEEEEECCC---------CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhH
Q 045431 357 NSL----G-FKVYGGKNAPYVWVQFPG---------RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGN 420 (433)
Q Consensus 357 ~~~----g-~~~~~~~~g~~~~~~~~~---------~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~ 420 (433)
+++ . +....+ .|+++|++++. .+..++...+++ +||.+.||..| ++++||++ ..++++
T Consensus 336 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~~~----~~~iRi~~~~~~~~~~ 409 (426)
T 1sff_A 336 LAIAEKHPEIGDVRG-LGAMIAIELFEDGDHNKPDAKLTAEIVARARD-KGLILLSCGPY----YNVLRILVPLTIEDAQ 409 (426)
T ss_dssp HHHHHTCTTEEEEEE-ETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHH-TTEECEEESTT----SCEEEECCCTTCCHHH
T ss_pred HHHHHhCCCeEEEEE-EEEEEEEEEecCccccCCChHHHHHHHHHHHH-CCcEEecCCCC----CCEEEEECCccCCHHH
Confidence 553 2 223334 48899999842 124456666665 59999998753 47899996 568999
Q ss_pred HHHHHHHHHHhh
Q 045431 421 VLEACKRFKHLY 432 (433)
Q Consensus 421 l~~~l~~l~~~l 432 (433)
+++++++|++++
T Consensus 410 i~~~~~~l~~~l 421 (426)
T 1sff_A 410 IRQGLEIISQCF 421 (426)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.98 E-value=6.5e-31 Score=254.82 Aligned_cols=327 Identities=14% Similarity=0.154 Sum_probs=232.5
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCC----CCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYG----AEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDI 139 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~----~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al 139 (433)
+.+.|+.+.+. ++|+.+.+++.+.+..... .....|. ...+..++++++++++ ++++++|++|+|+++++
T Consensus 26 ~~~~ld~~~~~-~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~la~~~----g~~~~~v~~~~g~t~al 99 (406)
T 3cai_A 26 GWVHFDAPAGM-LIPDSVATTVSTAFRRSGA-STVGAHPSARRSAAVLDAAREAVADLV----NADPGGVVLGADRAVLL 99 (406)
T ss_dssp SCEECBGGGCC-CCCHHHHHHHHHHHHHCCS-SSCSSSHHHHHHHHHHHHHHHHHHHHH----TCCGGGEEEESCHHHHH
T ss_pred CeEEEeCCCcC-CCCHHHHHHHHHHHHhcCC-CCCCccHHHHHHHHHHHHHHHHHHHHh----CCCCCeEEEeCChHHHH
Confidence 47888888776 7788999999998875321 1112232 2346788999999998 77888999999999999
Q ss_pred HHH-HHh---cCCCCEEEEeCCCChhhhhhHHH----hCCcccccccccccceEEEeecCccCCcccCCCC-----CCCc
Q 045431 140 SRL-QIV---FGSNVTMAVQDPSYPAYVDSSVI----MGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VART 206 (433)
Q Consensus 140 ~~l-~~l---~~~gd~Vl~~~p~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 206 (433)
.++ ..+ +++||+|++++|+|+++...+.. .| .+++.++.+++++ ..+++. .+++
T Consensus 100 ~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g------------~~v~~v~~~~~~~-~~d~~~l~~~l~~~~ 166 (406)
T 3cai_A 100 SLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYG------------AKVKWAEVDIETG-ELPTWQWESLISKST 166 (406)
T ss_dssp HHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHB------------CEEEEECCCTTTC-CCCGGGHHHHCCTTE
T ss_pred HHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcC------------CeEEEEecCcccC-CcCHHHHHHHhCCCc
Confidence 974 556 78999999999999987766654 46 4788888763222 222222 3578
Q ss_pred cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccce
Q 045431 207 DIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRL 286 (433)
Q Consensus 207 ~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~ 286 (433)
++|++++|+||||.+++ +++|.++|+++|+++|+|++|+... .+.++..+ +..+++.|+||++| ++ +
T Consensus 167 ~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g~---~~~~~~~~----~~d~~~~s~~K~~g-~~--~ 233 (406)
T 3cai_A 167 RLVAVNSASGTLGGVTD---LRAMTKLVHDVGALVVVDHSAAAPY---RLLDIRET----DADVVTVNAHAWGG-PP--I 233 (406)
T ss_dssp EEEEEESBCTTTCBBCC---CHHHHHHHHHTTCEEEEECTTTTTT---CCCCHHHH----CCSEEEEEGGGGTS-CS--C
T ss_pred eEEEEeCCcCCccccCC---HHHHHHHHHHcCCEEEEEcccccCC---CCCCchhc----CCCEEEeehhhhcC-CC--c
Confidence 99999999999999998 7889999999999999999998421 12233333 23588999999886 55 8
Q ss_pred e-eeeccccccccCCcchhHHHHHHH---------hhccCCCcHHHHHHHHHhcC---cCC----------h-hHHHHHH
Q 045431 287 G-WTVIPKELLFSDGFPVAKDFNRIV---------CTCFNGASNISQAGGLACLS---PEG----------F-KAVHEVI 342 (433)
Q Consensus 287 G-~l~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~q~~~~~~l~---~~~----------~-~~~~~~~ 342 (433)
| |++++++++. .+.... .......+.+.+.++.++++ ..+ + .++++++
T Consensus 234 G~~~~~~~~~~~--------~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~ 305 (406)
T 3cai_A 234 GAMVFRDPSVMN--------SFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSAD 305 (406)
T ss_dssp EEEEESCHHHHH--------TSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHH
T ss_pred CeEEEEehHHHh--------hcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHH
Confidence 9 9999987742 111110 01122345555444333332 222 0 1578889
Q ss_pred HHHHHHHHHHHHHHhhc-CCeeecCC--CccEEEEECCCCChHHHHHHHHHcCCeEecCCC------CCCCC-CCCeEEE
Q 045431 343 GFYKENTDIIVETFNSL-GFKVYGGK--NAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGS------GFGPG-GEGFIRV 412 (433)
Q Consensus 343 ~~~~~~~~~l~~~l~~~-g~~~~~~~--~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~------~f~~~-~~~~iRi 412 (433)
++++++++++.+.|+++ |+.+..+. .+.++++.+++.+..++...+. ++||.+.+|. .|+.. +.+++||
T Consensus 306 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~~gi~v~~g~~~~~~~~~g~~~~~~~iRi 384 (406)
T 3cai_A 306 AYLNRVFDYLMVSLRSLPLVMLIGRPEAQIPVVSFAVHKVPADRVVQRLA-DNGILAIANTGSRVLDVLGVNDVGGAVTV 384 (406)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEECCCCSSBCSEEEEEETTBCHHHHHHHHH-HTTEECEECCSCHHHHHHTTTTTTCCEEE
T ss_pred HHHHHHHHHHHHHHhcCCCeEEcCCccccCCEEEEEECCcCHHHHHHHHH-HCCcEEecCChHHHHHHcCCCCCCCeEEE
Confidence 99999999999999987 78776553 2447888888656667777765 4699999987 33322 3578999
Q ss_pred eecc--ChhHHHHHHHHHHHh
Q 045431 413 SAFG--HRGNVLEACKRFKHL 431 (433)
Q Consensus 413 ~~~~--~~~~l~~~l~~l~~~ 431 (433)
++.. +++++++++++|+++
T Consensus 385 s~~~~~t~e~i~~~~~~l~~~ 405 (406)
T 3cai_A 385 GLAHYSTMAEVDQLVRALASL 405 (406)
T ss_dssp ECCTTCCHHHHHHHHHHHHTC
T ss_pred EeecCCCHHHHHHHHHHHHHh
Confidence 9754 799999999999864
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.9e-31 Score=257.43 Aligned_cols=321 Identities=11% Similarity=0.143 Sum_probs=228.5
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCC--CCCCCHHHHHHHHHHHhccCCCCCC-cEEEcCChHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYG--AEQGEKPLRAAIASTFYKDLGIEEG-DIFVSDGAKCDIS 140 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~--~~~g~~~lr~~la~~l~~~~~~~~~-~i~~~~G~~~al~ 140 (433)
..+.+..|. .++|+.+.+++.+.+.. .|. ...+..++++.+++++ +++++ +|++|+|+++++.
T Consensus 19 ~~~~~~~g~--~~~~~~v~~a~~~~~~~--------~~~~~~~~~~~~l~~~la~~~----g~~~~~~i~~~~g~t~a~~ 84 (393)
T 2huf_A 19 NKLLMGPGP--SNAPQRVLDAMSRPILG--------HLHPETLKIMDDIKEGVRYLF----QTNNIATFCLSASGHGGME 84 (393)
T ss_dssp CCEECSSSC--CCCCHHHHHHTTSCCCC--------TTSHHHHHHHHHHHHHHHHHH----TCCCSEEEEESSCHHHHHH
T ss_pred CeEEecCCC--CCCCHHHHHHHHhhhcc--------CCCHHHHHHHHHHHHHHHHHh----CCCCCcEEEEcCcHHHHHH
Confidence 457776663 56788888887765431 122 2356788899999887 77765 8999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCChhhh--hhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CC-CccEEEEcC
Q 045431 141 R-LQIVFGSNVTMAVQDPSYPAYV--DSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VA-RTDIIFFCS 213 (433)
Q Consensus 141 ~-l~~l~~~gd~Vl~~~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~-~~~~i~l~~ 213 (433)
+ +..++++||+|++++|+|+++. ..++..| .+++.++.+.++.++.+ +++ .+ ++++|++++
T Consensus 85 ~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~ 152 (393)
T 2huf_A 85 ATLCNLLEDGDVILIGHTGHWGDRSADMATRYG------------ADVRVVKSKVGQSLSLDEIRDALLIHKPSVLFLTQ 152 (393)
T ss_dssp HHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTT------------CEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEES
T ss_pred HHHHHHhCCCCEEEEECCCcchHHHHHHHHHcC------------CeeEEEeCCCCCCCCHHHHHHHHhccCCcEEEEEc
Confidence 7 5777899999999999998853 2334456 47788887653222221 221 23 789999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccc-cccccceeeeecc
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYA-GFTGVRLGWTVIP 292 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~-~~~G~r~G~l~~~ 292 (433)
|+||||.+++ +++|.++|++||+++|+|++++.. ..+..+.. .+..+++.|+||++ |++|+ ||++++
T Consensus 153 ~~nptG~~~~---l~~i~~~~~~~~~~li~D~a~~~~---~~~~~~~~----~~~d~~~~s~sK~l~g~~G~--G~~~~~ 220 (393)
T 2huf_A 153 GDSSTGVLQG---LEGVGALCHQHNCLLIVDTVASLG---GAPMFMDR----WEIDAMYTGSQKVLGAPPGI--TPVSFS 220 (393)
T ss_dssp EETTTTEECC---CTTHHHHHHHTTCEEEEECTTTBT---TBCCCTTT----TTCSEEECCSSSTTCCCSSC--EEEEEC
T ss_pred cCCCccccCC---HHHHHHHHHHcCCEEEEEcccccC---CCCcchhh----cCccEEEECCCcccccCCCe--EEEEEC
Confidence 9999999999 789999999999999999998732 11222221 23568899999975 45675 999998
Q ss_pred ccccccCCcchhHHHHHHH-----------------------hhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHH
Q 045431 293 KELLFSDGFPVAKDFNRIV-----------------------CTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENT 349 (433)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 349 (433)
++++ +.+.... .......+...+.++.++++......+++.++++++++
T Consensus 221 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~ 292 (393)
T 2huf_A 221 HRAV--------ERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCA 292 (393)
T ss_dssp HHHH--------HHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHH--------HHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 8774 3333210 00112345566665555554221123678888999999
Q ss_pred HHHHHHHhhcCCeeecCC---CccEEEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee-c--cChhHHH
Q 045431 350 DIIVETFNSLGFKVYGGK---NAPYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA-F--GHRGNVL 422 (433)
Q Consensus 350 ~~l~~~l~~~g~~~~~~~---~g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~-~--~~~~~l~ 422 (433)
+++.+.|+++|+.+..+. .+.++|+.++ +.+..++...|++++||.+.+|..|. .++++||++ . .++++++
T Consensus 293 ~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~--~~~~~Ri~~~~~~~~~e~i~ 370 (393)
T 2huf_A 293 KRLYRGLQDAGFELYADPKDRLSTVTTIKVPQGVDWLKAAQYAMKTYLVEISGGLGPT--AGQVFRIGLMGQNATTERVD 370 (393)
T ss_dssp HHHHHHHHHTTCCBSSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCGGG--TTTEEEEECCGGGCSHHHHH
T ss_pred HHHHHHHHHcCCeeccCccccCCcEEEEEcCCCCCHHHHHHHHHHhCCEEEecCcccc--cCCEEEEEcccCcCCHHHHH
Confidence 999999998888776653 3558889987 55677777777766799999988653 357999998 5 3688899
Q ss_pred HHHHHHHHhh
Q 045431 423 EACKRFKHLY 432 (433)
Q Consensus 423 ~~l~~l~~~l 432 (433)
+++++|++++
T Consensus 371 ~~~~~l~~~~ 380 (393)
T 2huf_A 371 RVLQVFQEAV 380 (393)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998875
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-30 Score=247.09 Aligned_cols=320 Identities=11% Similarity=0.094 Sum_probs=221.7
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR- 141 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~- 141 (433)
+.+|+|+.+.+ .++++.+.+++.+.+. .....|++.....++++.+++++ + ++++|++|+|+++++.+
T Consensus 7 ~~~id~~~~~~-~~~~~~v~~a~~~~~~-----~~~~~~~~~~~~~~l~~~la~~~----g-~~~~v~~~~~gt~a~~~a 75 (356)
T 1v72_A 7 PPALGFSSDNI-AGASPEVAQALVKHSS-----GQAGPYGTDELTAQVKRKFCEIF----E-RDVEVFLVPTGTAANALC 75 (356)
T ss_dssp CCCCBCSCGGG-CCCCHHHHHHHHHTTS-----SCCCSTTCSHHHHHHHHHHHHHH----T-SCCEEEEESCHHHHHHHH
T ss_pred CceEeeccCCc-cCCCHHHHHHHHhhcc-----CcccccccchHHHHHHHHHHHHh----C-CCCcEEEeCCccHHHHHH
Confidence 46899998754 4678889999888652 11245654444556666666665 5 44569999999999987
Q ss_pred HHHhcCCCCEEEEeCCCChhhhhh--HHHh--CCcccccccccccceEEEeecCccCCcccC-CCC---C-------CCc
Q 045431 142 LQIVFGSNVTMAVQDPSYPAYVDS--SVIM--GQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST---V-------ART 206 (433)
Q Consensus 142 l~~l~~~gd~Vl~~~p~~~~~~~~--~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~-------~~~ 206 (433)
+..++++||.|++++|+|...... +... | .+++.++.+. ..++.+ +++ . +++
T Consensus 76 l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~-~~~d~~~l~~~~i~~~~~~~~~~~ 142 (356)
T 1v72_A 76 LSAMTPPWGNIYCHPASHINNDECGAPEFFSNG------------AKLMTVDGPA-AKLDIVRLRERTREKVGDVHTTQP 142 (356)
T ss_dssp HHTSCCTTEEEEECTTSHHHHSSTTHHHHHTTS------------CEEEECCCGG-GCCCHHHHHHHTTSSTTCTTSCEE
T ss_pred HHHhcCCCCEEEEcCccchhhhhchHHHHHhCC------------cEEEEecCCC-CeEcHHHHHHHhhhcchhhccCCc
Confidence 566778999999999999887766 6666 7 3677777642 222111 211 1 157
Q ss_pred cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccc--cCCCCCcccccCCCCcceEEEeccccccccccc
Q 045431 207 DIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYI--SDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGV 284 (433)
Q Consensus 207 ~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~--~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~ 284 (433)
++|++++||| ||.+++.+++++|+++|++||++||+|++|..+. +.+.......++...+ +++.|+||+ +.
T Consensus 143 ~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d--~~~~s~sK~-g~--- 215 (356)
T 1v72_A 143 ACVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVD--ALSFGATKN-GV--- 215 (356)
T ss_dssp EEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCC--EEEECCGGG-TC---
T ss_pred eEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCC--EEEEecccC-CC---
Confidence 8999999987 9999999999999999999999999999998542 1222111211111122 445689998 42
Q ss_pred cee--eeeccccccccCCcchhHHHHHHHhhcc--CCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-
Q 045431 285 RLG--WTVIPKELLFSDGFPVAKDFNRIVCTCF--NGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL- 359 (433)
Q Consensus 285 r~G--~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 359 (433)
|+| |++++++++ +.+........ ...+...+.++...+++. ...+..++++++++++.+.|+++
T Consensus 216 ~~G~g~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~l~~~L~~~~ 284 (356)
T 1v72_A 216 LAAEAIVLFNTSLA--------TEMSYRRKRAGHLSSKMRFLSAQIDAYLTDD---LWLRNARKANAAAQRLAQGLEGLG 284 (356)
T ss_dssp SSCEEEEESSGGGH--------HHHHHHHHHTTCCCSSTHHHHHHHHHHTSTT---HHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred cCccEEEEECHHHH--------hhHHHHhhccCchhhhHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHhhCC
Confidence 455 888888774 44443322211 112334444455666532 23455677888999999999986
Q ss_pred CCeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhhC
Q 045431 360 GFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 360 g~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l~ 433 (433)
|+.+..+.+++++|++++ .++...+. ++||.+.||. |+ ++++|+++ ..+++++++++++|+++++
T Consensus 285 g~~~~~~~~~~~~~~~~~----~~~~~~l~-~~gi~v~~g~-~~---~~~iRi~~~~~~~~~~i~~~~~~l~~~l~ 351 (356)
T 1v72_A 285 GVEVLGGTEANILFCRLD----SAMIDALL-KAGFGFYHDR-WG---PNVVRFVTSFATTAEDVDHLLNQVRLAAD 351 (356)
T ss_dssp TEEEESCCCSSEEEEEEC----HHHHHHHH-HTTCBCBCSS-SS---TTEEEEECCTTCCHHHHHHHHHHHHHTC-
T ss_pred CcEEccCCCccEEEEEcC----HHHHHHHH-hcCeEEeccc-cC---CCeEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 888877778899999986 26666665 4599999987 54 67999995 3589999999999998763
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-31 Score=250.89 Aligned_cols=328 Identities=12% Similarity=0.083 Sum_probs=229.6
Q ss_pred eEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCC--CCCCHHHHHHHHHHHhccCCC--CCCcEEEcCChHHHHH
Q 045431 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA--EQGEKPLRAAIASTFYKDLGI--EEGDIFVSDGAKCDIS 140 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~la~~l~~~~~~--~~~~i~~~~G~~~al~ 140 (433)
+++|+.| | .+.|+.+.+++.+.+. +.|+. ..+..++|+++++++ +. ++++|++|+|+++++.
T Consensus 5 ~~~~~~g-p-~~~~~~v~~a~~~~~~--------~~~~~~~~~~~~~l~~~la~~~----g~~~~~~~v~~~~g~t~a~~ 70 (366)
T 1m32_A 5 YLLLTPG-P-LTTSRTVKEAMLFDSC--------TWDDDYNIGVVEQIRQQLTALA----TASEGYTSVLLQGSGSYAVE 70 (366)
T ss_dssp CEECSSS-S-CCCCHHHHHTTCCCCC--------TTSHHHHTTTHHHHHHHHHHHH----CSSSSEEEEEEESCHHHHHH
T ss_pred cccccCC-C-cCCCHHHHHHHhhhhc--------CCCHHHHHHHHHHHHHHHHHHh----CCCCcCcEEEEecChHHHHH
Confidence 6889988 3 4678888888776321 12211 168899999999998 42 2358999999999999
Q ss_pred H-HHHhcCCCCEEEEeC-CCChh-hhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC----CCCccEEEEc
Q 045431 141 R-LQIVFGSNVTMAVQD-PSYPA-YVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST----VARTDIIFFC 212 (433)
Q Consensus 141 ~-l~~l~~~gd~Vl~~~-p~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~i~l~ 212 (433)
+ +..++++||+|++.+ ++|+. +...+...| .+++.++.+.+...+.+ +++ ..++++|+++
T Consensus 71 ~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~ 138 (366)
T 1m32_A 71 AVLGSALGPQDKVLIVSNGAYGARMVEMAGLMG------------IAHHAYDCGEVARPDVQAIDAILNADPTISHIAMV 138 (366)
T ss_dssp HHHHHSCCTTCCEEEEESSHHHHHHHHHHHHHT------------CCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHhcCCCCeEEEEeCCCccHHHHHHHHHhC------------CceEEEeCCCCCCCCHHHHHHHHhcCCCeEEEEEe
Confidence 7 577789999988776 55654 556667777 46777777643222222 221 1357889999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecc
Q 045431 213 SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIP 292 (433)
Q Consensus 213 ~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~ 292 (433)
+|+||||.+++ +++|.++|++||++||+||+|+.... +.++.. .+..++++|+||+++ ++.++||++++
T Consensus 139 ~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~---~~~~~~----~~~di~~~s~~K~~~-~~~g~G~~~~~ 207 (366)
T 1m32_A 139 HSETTTGMLNP---IDEVGALAHRYGKTYIVDAMSSFGGI---PMDIAA----LHIDYLISSANKCIQ-GVPGFAFVIAR 207 (366)
T ss_dssp SEETTTTEECC---HHHHHHHHHHHTCEEEEECTTTTTTS---CCCTTT----TTCSEEEEESSSTTC-CCSSEEEEEEE
T ss_pred cccCCcceecC---HHHHHHHHHHcCCEEEEECCccccCc---Cccccc----cCccEEEecCccccc-CCCceEEEEEC
Confidence 99999999999 78999999999999999999984322 222221 134589999999874 34457999999
Q ss_pred ccccccCCcc-------hhHHHHHHHh---hccCCCcHHHHHHHHHhcCcCChhH-HHHHHHHHHHHHHHHHHHHhhcCC
Q 045431 293 KELLFSDGFP-------VAKDFNRIVC---TCFNGASNISQAGGLACLSPEGFKA-VHEVIGFYKENTDIIVETFNSLGF 361 (433)
Q Consensus 293 ~~~~~~~~~~-------~~~~~~~~~~---~~~~~~~~~~q~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~g~ 361 (433)
++++..-... ....+..... ......+.+.+.++.++++...... +++++++++++++++.+.|+++|+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~ 287 (366)
T 1m32_A 208 EQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGF 287 (366)
T ss_dssp HHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHCCC
Confidence 8875321110 0001111101 0123466777766666665321111 577889999999999999998887
Q ss_pred eeecC---CCccEEEEECC---CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec--cChhHHHHHHHHHHHhhC
Q 045431 362 KVYGG---KNAPYVWVQFP---GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF--GHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 362 ~~~~~---~~g~~~~~~~~---~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~l~~~l~~l~~~l~ 433 (433)
.+..+ ..++++|+.++ +.+..++...+.++ ||.+.+|..| ..+++|+++. .+++++++++++|+++++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~~~---~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 363 (366)
T 1m32_A 288 NTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLKEQ-GFVIYPGKVS---QSDCFRIGNIGEVYAADITALLTAIRTAMY 363 (366)
T ss_dssp CBSSCGGGBCSSEEEEECCCCTTCCHHHHHHHHHHT-TEECEECCCS---SSCEEEEECCSSCCHHHHHHHHHHHHHHCT
T ss_pred eeccCchhcCceEEEEEcCccCCCCHHHHHHHHHHC-CEEEECCcCC---CCCEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 77654 35679999997 44666777777655 9999999876 3579999975 479999999999998763
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.9e-31 Score=256.03 Aligned_cols=342 Identities=13% Similarity=0.084 Sum_probs=230.3
Q ss_pred CCCCceEEecCCCCCCCChHHHHHHHHHHHh--hcccCCCC--C--CCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcC
Q 045431 60 YPDAEVISLGIGDTTEPIPEVITSALAKRSY--ALSTQEGY--S--GYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSD 133 (433)
Q Consensus 60 ~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~--~~~~~~~~--~--~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~ 133 (433)
.+++++|.|+.+.+. ++|+.+.+++.+.+. ........ . .|.......++++.+++++ ++++++|++|+
T Consensus 18 ~~~~~~iyld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----~~~~~~v~~~~ 92 (423)
T 3lvm_A 18 RAMKLPIYLDYSATT-PVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLV----GADPREIVFTS 92 (423)
T ss_dssp --CCSSEECBTTTCC-CCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHH----TCCGGGEEEES
T ss_pred cccCCCEeecCCCcC-CCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHc----CCCCCeEEEeC
Confidence 445678999888775 788999999888765 21100000 0 1111223467777777776 78889999999
Q ss_pred ChHHHHHH-HHHhc----CCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCC
Q 045431 134 GAKCDISR-LQIVF----GSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VAR 205 (433)
Q Consensus 134 G~~~al~~-l~~l~----~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~ 205 (433)
|+++++.+ +..++ ++||+|++++|+|+++...+..++..+ .+++.++.+.+..++.+ +++ .++
T Consensus 93 ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g---------~~~~~v~~~~~~~~d~~~l~~~i~~~ 163 (423)
T 3lvm_A 93 GATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREG---------FEVTYLAPQRNGIIDLKELEAAMRDD 163 (423)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTT---------CEEEEECCCTTSCCCHHHHHHHCCTT
T ss_pred ChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcC---------CEEEEeccCCCCccCHHHHHHhcCCC
Confidence 99999997 45555 389999999999999887775551111 47888888754332222 221 357
Q ss_pred ccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccc
Q 045431 206 TDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVR 285 (433)
Q Consensus 206 ~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r 285 (433)
+++|++++|+||||.+++ +++|+++|++||++||+||+|+.... +..+... +..+++.|+||.+|.+|
T Consensus 164 ~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~---~~~~~~~----~~di~~~s~sK~~g~~g-- 231 (423)
T 3lvm_A 164 TILVSIMHVNNEIGVVQD---IAAIGEMCRARGIIYHVDATQSVGKL---PIDLSQL----KVDLMSFSGHKIYGPKG-- 231 (423)
T ss_dssp EEEEECCSBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTTS---CCCTTTS----CCSEEEEESTTTTSCSS--
T ss_pred cEEEEEeCCCCCCccccC---HHHHHHHHHHcCCEEEEEhhhhcCCC---CcChhhc----CCCEEEechHHhcCCCC--
Confidence 889999999999999999 78899999999999999999874211 2222222 34588999999887556
Q ss_pred eeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeee
Q 045431 286 LGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVY 364 (433)
Q Consensus 286 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~ 364 (433)
+||++++++.+..-.+ ................+...+.++.+++.. ...++++.+++++++++.+.+.|+++ |+.+.
T Consensus 232 ~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~al~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 309 (423)
T 3lvm_A 232 IGALYVRRKPRVRIEA-QMHGGGHERGMRSGTLPVHQIVGMGEAYRI-AKEEMATEMERLRGLRNRLWNGIKDIEEVYLN 309 (423)
T ss_dssp CEEEEECBTTBCCCCC-SSCSSCTTTTTCCSCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEE
T ss_pred eEEEEEeccccCCCCc-cccCCcccccccCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence 8999999877522100 000000000112233456666655555542 12346888999999999999999988 88887
Q ss_pred cCCC---ccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCC-----------------CCeEEEeec--cChhHHH
Q 045431 365 GGKN---APYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGG-----------------EGFIRVSAF--GHRGNVL 422 (433)
Q Consensus 365 ~~~~---g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~-----------------~~~iRi~~~--~~~~~l~ 422 (433)
.+.. +.++++.+++.+..++...+ .+ |.+.+|..|.+.. .+++||++. .++++++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~ 386 (423)
T 3lvm_A 310 GDLEHGAPNILNVSFNYVEGESLIMAL-KD--LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEID 386 (423)
T ss_dssp SCSTTBCTTEEEEEETTSCHHHHHHHT-TT--EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHH
T ss_pred CCccccCCCeEEEEeCCCCHHHHHHHH-hh--heeccCccccCCCccccHHHHHhCCCccccCceEEEECCCCCCHHHHH
Confidence 6543 35666777766666666554 33 9999998775421 478999974 4789999
Q ss_pred HHHHHHHHhh
Q 045431 423 EACKRFKHLY 432 (433)
Q Consensus 423 ~~l~~l~~~l 432 (433)
+++++|++++
T Consensus 387 ~~~~~l~~~~ 396 (423)
T 3lvm_A 387 YTIELVRKSI 396 (423)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998875
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.8e-31 Score=254.23 Aligned_cols=314 Identities=12% Similarity=0.113 Sum_probs=223.5
Q ss_pred CCCChHHHHHHHHHHHhhcccCCCCCCCCC--CCCCHHHHHHHHHHHhccCCCCCCc-EEEcCChHHHHHH-HHHhcCCC
Q 045431 74 TEPIPEVITSALAKRSYALSTQEGYSGYGA--EQGEKPLRAAIASTFYKDLGIEEGD-IFVSDGAKCDISR-LQIVFGSN 149 (433)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~la~~l~~~~~~~~~~-i~~~~G~~~al~~-l~~l~~~g 149 (433)
+.++++.+.+++.+.+ ...|.+ .....++++.+++++ +.+.++ |++++|+++++.+ +..++++|
T Consensus 21 p~~~~~~v~~a~~~~~--------~~~~~~~~~~~~~~~~~~la~~~----~~~~~~~v~~~~sgt~al~~~~~~~~~~g 88 (411)
T 3nnk_A 21 PINADPRVLRAMSSQL--------IGQYDPAMTHYMNEVMALYRGVF----RTENRWTMLVDGTSRAGIEAILVSAIRPG 88 (411)
T ss_dssp CCCCCHHHHHHHTSCC--------CCTTCHHHHHHHHHHHHHHHHHH----TCCCSEEEEEESCHHHHHHHHHHHHCCTT
T ss_pred CCCCCHHHHHHhhccc--------cccccHHHHHHHHHHHHHHHHHh----CCCCCcEEEECCCcHHHHHHHHHHhcCCC
Confidence 3567888887776532 112211 122355666666665 676665 7888999999987 67788999
Q ss_pred CEEEEeCCCChh--hhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--C-CCccEEEEcCCCCccccCCC
Q 045431 150 VTMAVQDPSYPA--YVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--V-ARTDIIFFCSPNNPTGAAAT 223 (433)
Q Consensus 150 d~Vl~~~p~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~-~~~~~i~l~~p~nPtG~~~~ 223 (433)
|+|++++|+|++ +...++..| .+++.++.+.+..++.+ +++ . .++++|++++||||||.+++
T Consensus 89 d~Vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~ 156 (411)
T 3nnk_A 89 DKVLVPVFGRFGHLLCEIARRCR------------AEVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQP 156 (411)
T ss_dssp CEEEEEECSHHHHHHHHHHHHTT------------CEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC
T ss_pred CEEEEecCCchHHHHHHHHHHcC------------CeEEEEecCCCCCCCHHHHHHHHhhCCCeEEEEeCCCCCcceecc
Confidence 999999999987 777777788 47888887644332222 221 1 27899999999999999998
Q ss_pred HHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcch
Q 045431 224 REQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPV 303 (433)
Q Consensus 224 ~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~ 303 (433)
+++|.++|++||+++|+|++++.... +..+.. .+..+++.|+||+++ ++.++||++++++++
T Consensus 157 ---l~~i~~l~~~~~~~li~Dea~~~~~~---~~~~~~----~~~d~~~~s~~K~l~-~~~g~g~~~~~~~~~------- 218 (411)
T 3nnk_A 157 ---LAELGEICRRYDALFYTDATASLGGN---PLETDV----WGLDAVSAGMQKCLG-GPSGTSPITLSARME------- 218 (411)
T ss_dssp ---CTTHHHHHHHHTCEEEEECTTTBTTB---CCCTTT----TTCSEEECCSTTTTC-CCSSEEEEEECHHHH-------
T ss_pred ---HHHHHHHHHHcCCEEEEECCcccCCc---ccchhc----cCCcEEEecCccccC-CCCceEEEEECHHHH-------
Confidence 77899999999999999999874211 222211 234589999999864 555699999998874
Q ss_pred hHHHHHHH------------------------------------hhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHH
Q 045431 304 AKDFNRIV------------------------------------CTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKE 347 (433)
Q Consensus 304 ~~~~~~~~------------------------------------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 347 (433)
+.+.... .....+.+...+.++.++++......+++.++++++
T Consensus 219 -~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~ 297 (411)
T 3nnk_A 219 -EAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKL 297 (411)
T ss_dssp -HHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred -HHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3333211 011233466666665565542222236888999999
Q ss_pred HHHHHHHHHhhcCCeeecCCC---ccEEEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee-c--cChhH
Q 045431 348 NTDIIVETFNSLGFKVYGGKN---APYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA-F--GHRGN 420 (433)
Q Consensus 348 ~~~~l~~~l~~~g~~~~~~~~---g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~-~--~~~~~ 420 (433)
+++++.+.|++.|+.+..+.+ +.++|+.++ +.+..++...+++++||.+.+|.. ....+++||++ . .++++
T Consensus 298 ~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~--~~~~~~iRi~~~~~~~~~~~ 375 (411)
T 3nnk_A 298 HGDALVKGIQAMGLETFGDLKHKMNNVLGVVIPQGINGDQARKLMLEDFGIEIGTSFG--PLHGKVWRIGTMGYNARKDC 375 (411)
T ss_dssp HHHHHHHHHHHTTCCBCSCGGGBCSSEEEEECCTTCCHHHHHHHHHHHHSEEEEECCG--GGTTTEEEEECCGGGCSHHH
T ss_pred HHHHHHHHHHHcCCEeCCCcccccccEEEEECCCCCCHHHHHHHHHHhcCeEEeCccC--CCCCCEEEEeCccCcCCHHH
Confidence 999999999998888765543 678999997 566777888877777999998843 33467999997 3 37899
Q ss_pred HHHHHHHHHHhh
Q 045431 421 VLEACKRFKHLY 432 (433)
Q Consensus 421 l~~~l~~l~~~l 432 (433)
+++++++|++++
T Consensus 376 i~~~~~~l~~~l 387 (411)
T 3nnk_A 376 VMTTLSALEAVL 387 (411)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-31 Score=256.92 Aligned_cols=340 Identities=14% Similarity=0.058 Sum_probs=213.8
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCC----CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA----EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCD 138 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~----~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~a 138 (433)
+..|.|+.+.+. ++|+.+.+++.+.+.+... .....|.. .....++++.+++++ ++++++|++|+|++++
T Consensus 19 ~~~iyld~~~~~-~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~la~~~----~~~~~~v~~~~g~t~a 92 (400)
T 3vax_A 19 SHMTYLDAAATT-RVDQRVADIVLHWMTAEFG-NAGSRHEYGIRAKRGVERAREYLASTV----SAEPDELIFTSGATES 92 (400)
T ss_dssp ---CCCCCCCCS-SSCHHHHHHHHHHHHHHHS-CSSCHHHHHHHHHHHHHHHHHHHHHHT----TCCGGGEEEESCHHHH
T ss_pred CCcEEecCCCCC-CCCHHHHHHHHHHHHhccC-CCcccchhHHHHHHHHHHHHHHHHHHc----CCCCCcEEEeCCHHHH
Confidence 356777777654 6789999999998864321 11111211 122455666666665 8888999999999999
Q ss_pred HHH-HHHhc----CCCC-EEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEE
Q 045431 139 ISR-LQIVF----GSNV-TMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDII 209 (433)
Q Consensus 139 l~~-l~~l~----~~gd-~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i 209 (433)
+.+ +..++ ++|| .|++++++|+++...+..+...+ .+++.++.+.+..++.+ +++ .+++++|
T Consensus 93 l~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g---------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v 163 (400)
T 3vax_A 93 NNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRG---------FEVDFLTPGPSGRISVEGVMERLRPDTLLV 163 (400)
T ss_dssp HHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTT---------CEEEEECCCTTCCCCHHHHHTTCCTTEEEE
T ss_pred HHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcC---------CeEEEEccCCCCCcCHHHHHHhcCCCceEE
Confidence 997 56666 8999 99999999999877776653222 37888888654333222 222 3578999
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeee
Q 045431 210 FFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWT 289 (433)
Q Consensus 210 ~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l 289 (433)
++++||||||.+++ +++|.++|++||++||+|++|+.... +.++... ..+++.|+||.+|.+| +|++
T Consensus 164 ~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~---~~~~~~~-----~d~~~~s~~K~~g~~g--~g~~ 230 (400)
T 3vax_A 164 SLMHVNNETGVIQP---VAELAQQLRATPTYLHVDAAQGYGKV---PGDLTTP-----IDMISISGHKIGAPKG--VGAL 230 (400)
T ss_dssp ECCSBCTTTCBBCC---HHHHHHHHTTSSCEEEEECTTTTTTS---GGGGGSC-----CSEEEEETGGGTSCSS--CEEE
T ss_pred EEECCCCCceeeCc---HHHHHHHHHhcCCEEEEEhhhhcCCC---CcChhhc-----CcEEEEeHHHhCCCCc--eEEE
Confidence 99999999999999 68899999999999999999984211 2222211 3488999999776545 6777
Q ss_pred e-ccccccc---cCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeec
Q 045431 290 V-IPKELLF---SDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYG 365 (433)
Q Consensus 290 ~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~ 365 (433)
+ ++++.+. .....................+...+.++.++++. ..+++++.+++++++++++.+.|+..|+.+..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 309 (400)
T 3vax_A 231 VTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKI-FEAEHAQWQVAAQDLRSRLLAGLASTSFQVNG 309 (400)
T ss_dssp EECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHH-HHHSHHHHHHHHHHHHHHHHHHHTTTTCEECS
T ss_pred EEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHhhCCCCEEEeC
Confidence 7 7762110 00000000000001122333556666655555542 12356888999999999999999933888876
Q ss_pred CCC---ccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCC-------------C----CCeEEEee-c--cChhHHH
Q 045431 366 GKN---APYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPG-------------G----EGFIRVSA-F--GHRGNVL 422 (433)
Q Consensus 366 ~~~---g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~-------------~----~~~iRi~~-~--~~~~~l~ 422 (433)
+.. +.++++.+++.+..++...+. +||.+.+|..|... . .+++||++ . .++++++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~l~~~L~--~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~ 387 (400)
T 3vax_A 310 DQDHVVPHILNLSFEDVDAEAFLVTLK--DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVE 387 (400)
T ss_dssp CTTSBCTTEEEEECTTCCHHHHHHHHH--HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC--------
T ss_pred CcccCCCCEEEEEeCCCCHHHHHHHHh--cCcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHH
Confidence 554 467888888767777777766 59999998766431 1 48999998 4 4789999
Q ss_pred HHHHHHHHhhC
Q 045431 423 EACKRFKHLYK 433 (433)
Q Consensus 423 ~~l~~l~~~l~ 433 (433)
+++++|+++++
T Consensus 388 ~~~~~l~~~~~ 398 (400)
T 3vax_A 388 ELARGVAKLKP 398 (400)
T ss_dssp -----------
T ss_pred HHHHHHHHHhc
Confidence 99999988763
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-31 Score=256.42 Aligned_cols=341 Identities=10% Similarity=0.074 Sum_probs=225.8
Q ss_pred CCCceEEecCCC--CCCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHH
Q 045431 61 PDAEVISLGIGD--TTEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 61 ~~~~~i~l~~g~--~~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~ 137 (433)
++..++|++.+. .++. .|+.+.+++.+.+..... ....| +.....++++.+++++ ++++++|++|+|+++
T Consensus 43 ~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~--~~~~~-~~~~~~~l~~~la~~~----~~~~~~v~~~~gg~~ 115 (395)
T 1vef_A 43 EGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMA--MPQTL-PTPMRGEFYRTLTAIL----PPELNRVFPVNSGTE 115 (395)
T ss_dssp TSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCC--CCTTS-CCHHHHHHHHHHHHTS----CTTEEEEEEESSHHH
T ss_pred CCCEEEEccCccccccCCCCCHHHHHHHHHHHHhCCC--Ccccc-CCHHHHHHHHHHHHhc----CCCcCEEEEcCcHHH
Confidence 345688998875 3443 789999999999875421 11234 3345566666666664 677899999999999
Q ss_pred HHHHH-HHhc--CCCCEEEEeCCCChhhh-hhHHHhCCcccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcC
Q 045431 138 DISRL-QIVF--GSNVTMAVQDPSYPAYV-DSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCS 213 (433)
Q Consensus 138 al~~l-~~l~--~~gd~Vl~~~p~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~ 213 (433)
++.++ ..+. .+||.|++.+|+|++.. ..+...|...+...+.....++..++..+.+.+...+ .+++++|+++.
T Consensus 116 a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i--~~~~~~v~~~~ 193 (395)
T 1vef_A 116 ANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAV--DEETAAVILEP 193 (395)
T ss_dssp HHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHC--CTTEEEEEECS
T ss_pred HHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCCCcHHHHHHHh--ccCEEEEEEeC
Confidence 99974 4442 67899999999997644 4555556432100000000123333322111111111 24678777655
Q ss_pred CCCccccCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecc
Q 045431 214 PNNPTGAAA-TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIP 292 (433)
Q Consensus 214 p~nPtG~~~-~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~ 292 (433)
++||||.++ +.+++++|.++|++||++||+||+|+++...+.+.++.......+ ++ ||||+++ +|+|+||++++
T Consensus 194 ~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d-~~---s~sK~~~-~g~~~G~~~~~ 268 (395)
T 1vef_A 194 VQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPD-IL---TLAKALG-GGVPLGVAVMR 268 (395)
T ss_dssp EETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCS-EE---EECGGGG-TTSSCEEEEEE
T ss_pred ccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCCCCC-EE---EEccccc-CCCceEEEEeh
Confidence 588999865 688899999999999999999999997654443322222211123 22 8899998 59999999999
Q ss_pred ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCee--ecCCCcc
Q 045431 293 KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKV--YGGKNAP 370 (433)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~--~~~~~g~ 370 (433)
++++ +.+...........+.+.+.++.++++... . +...++++++++++.+.|++++..+ ..+..|+
T Consensus 269 ~~~~--------~~l~~~~~~~~~~~~~~~~~a~~~al~~~~-~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~ 337 (395)
T 1vef_A 269 EEVA--------RSMPKGGHGTTFGGNPLAMAAGVAAIRYLE-R--TRLWERAAELGPWFMEKLRAIPSPKIREVRGMGL 337 (395)
T ss_dssp HHHH--------HTSCTTSSCCSSTTCHHHHHHHHHHHHHHH-H--HTTHHHHHHHHHHHHHHHHTSCCTTEEEEEEETT
T ss_pred HHHH--------hhhccCCcCCCcCCCHHHHHHHHHHHHHHH-h--CCHHHHHHHHHHHHHHHHHHhhcCceEEEEEEEE
Confidence 8764 222221122344568888888777775321 1 3467788889999999998875321 1223678
Q ss_pred EEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhhC
Q 045431 371 YVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 371 ~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l~ 433 (433)
++|++++. ...++...+++++||.+.|+ +++++||++ ..+++++++++++|+++++
T Consensus 338 ~~~~~~~~-~~~~l~~~l~~~~gi~v~~~------~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~ 395 (395)
T 1vef_A 338 MVGLELKE-KAAPYIARLEKEHRVLALQA------GPTVIRFLPPLVIEKEDLERVVEAVRAVLA 395 (395)
T ss_dssp EEEEEESS-CSHHHHHHHHHHHCEECEES------STTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred EEEEEEcC-hHHHHHHHHHHHCCeEEecC------CCCEEEEeCCCCCCHHHHHHHHHHHHHHhC
Confidence 99999874 35677777773559999985 257999985 5689999999999999874
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=251.28 Aligned_cols=330 Identities=14% Similarity=0.118 Sum_probs=224.3
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCC---CCCHH--HHHHHH-HHHhccCCCCCCcEEEcCChHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAE---QGEKP--LRAAIA-STFYKDLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~---~g~~~--lr~~la-~~l~~~~~~~~~~i~~~~G~~~ 137 (433)
+.|+|..|.+++ |+.+.+++.+.+.+ .....|+.. .|.+. ++++++ +++.+.+++++++|++++|+.
T Consensus 24 ~~i~~~~~~~~~--~~~v~~a~~~~~~~----~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~~~i~~~sGt~- 96 (407)
T 2dkj_A 24 EGLELIASENFV--SKQVREAVGSVLTN----KYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAWANVQPHSGSQ- 96 (407)
T ss_dssp TSEECCTTCCCC--CHHHHHHHTSGGGG----CCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHH-
T ss_pred cceeeccCCCCC--CHHHHHHHHhhhhc----CcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCcceEEecchHH-
Confidence 579999998765 88999999888753 112334322 25553 444222 233332377777788888875
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCChhhh---hhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----C-CCcc
Q 045431 138 DISR-LQIVFGSNVTMAVQDPSYPAYV---DSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----V-ARTD 207 (433)
Q Consensus 138 al~~-l~~l~~~gd~Vl~~~p~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~ 207 (433)
++.+ +..++++||+|++++|+|+.+. ..+...|.. ...+.++.+++ ++..+++. . .+++
T Consensus 97 a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~~~-~~~~d~~~l~~~l~~~~~~ 165 (407)
T 2dkj_A 97 ANMAVYMALMEPGDTLMGMDLAAGGHLTHGSRVNFSGKL----------YKVVSYGVRPD-TELIDLEEVRRLALEHRPK 165 (407)
T ss_dssp HHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHH----------SEEEEECCCTT-TSSCCHHHHHHHHHHHCCS
T ss_pred HHHHHHHHhcCCCCEEEEecccccCccchHHHHHhcCce----------EEEEecCCCcc-cCccCHHHHHHHHhhcCCe
Confidence 8876 5677899999999999998883 444444421 12333333321 22233221 1 3789
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccc-cccCCCCCcccccCCCCcceEEEecccccccccccce
Q 045431 208 IIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYAL-YISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRL 286 (433)
Q Consensus 208 ~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~ 286 (433)
+|++++|+|| ...+ +++|.++|++||+++|+||+|+. +.+.+...+. ++ ..+++++|+||.+ +|+|+
T Consensus 166 ~v~~~~p~~~--~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~--~~---~~di~~~s~sK~l--~g~~~ 233 (407)
T 2dkj_A 166 VIVAGASAYP--RFWD---FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNP--LP---YAHVVTSTTHKTL--RGPRG 233 (407)
T ss_dssp EEEECCSSCC--SCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCC--TT---TCSEEEEESSGGG--CCCSC
T ss_pred EEEEeccccC--CCCC---HHHHHHHHHHcCCEEEEEccccccccccCccCCc--cc---cccEEEEeccccC--CCCCc
Confidence 9999899998 5555 89999999999999999999997 5444432211 11 2458899999965 68899
Q ss_pred eeeecc-ccccccCCcchhHHHHHHHhhcc-CCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeee
Q 045431 287 GWTVIP-KELLFSDGFPVAKDFNRIVCTCF-NGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVY 364 (433)
Q Consensus 287 G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 364 (433)
||++++ ++++ +.+........ .+.+.....++.++++.....++++++++++++++++.+.|++.|+.+.
T Consensus 234 G~~~~~~~~~~--------~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 305 (407)
T 2dkj_A 234 GLILSNDPELG--------KRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARRGYRIV 305 (407)
T ss_dssp EEEEESCHHHH--------HHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEG
T ss_pred eEEEECCHHHH--------HHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCceee
Confidence 999999 5664 55555442222 2333433334455554321246788999999999999999999888876
Q ss_pred c-CCCccEEEEECCC--CChHHHHHHHHHcCCeEecCCCCC----CCCCCCeEEEeec------cChhHHHHHHHHHHHh
Q 045431 365 G-GKNAPYVWVQFPG--RSSWDVFSEILEKTHVVTTPGSGF----GPGGEGFIRVSAF------GHRGNVLEACKRFKHL 431 (433)
Q Consensus 365 ~-~~~g~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~f----~~~~~~~iRi~~~------~~~~~l~~~l~~l~~~ 431 (433)
. +..++++|+.++. .+..++...+ .++||.+.+|..| ....++++|+++. .+++++++++++|+++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~ 384 (407)
T 2dkj_A 306 TGGTDNHLFLVDLRPKGLTGKEAEERL-DAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRA 384 (407)
T ss_dssp GGSCSSSEEEEECGGGTCCHHHHHHHH-HHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHH
T ss_pred cCCCCceEEEEECcccCCCHHHHHHHH-HHcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHHHHH
Confidence 5 3578899999973 3556666665 5569999998754 2234678999973 6899999999999987
Q ss_pred h
Q 045431 432 Y 432 (433)
Q Consensus 432 l 432 (433)
+
T Consensus 385 ~ 385 (407)
T 2dkj_A 385 L 385 (407)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-31 Score=249.58 Aligned_cols=316 Identities=17% Similarity=0.188 Sum_probs=210.5
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-H
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-L 142 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l 142 (433)
.+|+|+.+.+++ +++.+.+++.+.. .....|++..+..+||+++|+++ +. +++++++|+++++.+ +
T Consensus 4 ~~i~~~~~~~~~-p~~~~~~a~~~~~------~~~~~y~~~~~~~~l~~~la~~~----g~--~~~~~~~~gt~a~~~~~ 70 (347)
T 1jg8_A 4 MMIDLRSDTVTK-PTEEMRKAMAQAE------VGDDVYGEDPTINELERLAAETF----GK--EAALFVPSGTMGNQVSI 70 (347)
T ss_dssp -CEECSCGGGCC-CCHHHHHHHHTCC------CCCGGGTCCHHHHHHHHHHHHHH----TC--SEEEEESCHHHHHHHHH
T ss_pred eEEEeccccCCC-CCHHHHHHHhcCC------CCCcccCCChHHHHHHHHHHHHh----CC--ceEEEecCcHHHHHHHH
Confidence 579999999876 5567777776532 11235777788999999999998 54 356777777788776 6
Q ss_pred HHhcCCCCEEEEeCCCChhhhh---hHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--C------CCccEEE
Q 045431 143 QIVFGSNVTMAVQDPSYPAYVD---SSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--V------ARTDIIF 210 (433)
Q Consensus 143 ~~l~~~gd~Vl~~~p~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~------~~~~~i~ 210 (433)
..++++||+|++++|+|..... .....| .+++.+ .++++.++.+ +++ . +++++|+
T Consensus 71 ~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g------------~~~~~v-~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~ 137 (347)
T 1jg8_A 71 MAHTQRGDEVILEADSHIFWYEVGAMAVLSG------------VMPHPV-PGKNGAMDPDDVRKAIRPRNIHFPRTSLIA 137 (347)
T ss_dssp HHHCCTTCEEEEETTCHHHHSSTTHHHHHTC------------CEEEEE-CEETTEECHHHHHHHSCCSCTTSCCEEEEE
T ss_pred HHhcCCCCEEEEcCcchhhhccccchhhccC------------eEEEEe-cCCCCccCHHHHHHHhccccccccCceEEE
Confidence 7778999999999999976443 455566 355555 3222111111 111 1 2689999
Q ss_pred EcCCCCcc-ccCCCHHHHHHHHHHHHHcCCEEEEecccccc--ccCCCCCcccccCCCCcceEEEeccccccccccccee
Q 045431 211 FCSPNNPT-GAAATREQLTRLVQFAKDNGSIIVYDSAYALY--ISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLG 287 (433)
Q Consensus 211 l~~p~nPt-G~~~~~~~~~~i~~~a~~~~~~li~De~~~~~--~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G 287 (433)
+++||||| |.+++.+++++|+++|++||+++|+|++|... .+.+ .+...+....+ .++.|+||++++ + +|
T Consensus 138 ~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~--~~~~~~~~~~d--~~~~s~sK~l~~-~--~G 210 (347)
T 1jg8_A 138 IENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASG--VPVKEYAGYAD--SVMFCLSKGLCA-P--VG 210 (347)
T ss_dssp EESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHC--CCHHHHHHTCS--EEEEESSSTTCC-S--SC
T ss_pred EeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcC--CChHHhccccc--EEEEecccccCC-C--ce
Confidence 99999999 99999999999999999999999999987531 1122 11221111123 334589999973 3 67
Q ss_pred -eeeccccccccCCcchhHHHHHHHhhcc--CCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeee
Q 045431 288 -WTVIPKELLFSDGFPVAKDFNRIVCTCF--NGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVY 364 (433)
Q Consensus 288 -~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 364 (433)
|++++++++ +.+........ ...+.+.+.++...++... +.++ +..++++.+.+.|+++|+.+.
T Consensus 211 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~----~~~~~~~~l~~~L~~~~~~~~ 277 (347)
T 1jg8_A 211 SVVVGDRDFI--------ERARKARKMLGGGMRQAGVLAAAGIIALTKMV-DRLK----EDHENARFLALKLKEIGYSVN 277 (347)
T ss_dssp EEEEECHHHH--------HHHHHHHHHHTCCCSSTHHHHHHHHHHHHHSS-TTHH----HHHHHHHHHHHHHHHHTCBCC
T ss_pred EEEEcCHHHH--------HHHHHHHHHcCCchhHHHHHHHHHHHHHHHHH-HHHH----HHHHHHHHHHHHHHhcCceec
Confidence 466676664 44443332222 1234455555555554221 1122 223566788888887776652
Q ss_pred -cCCCccEEEEECC--CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 365 -GGKNAPYVWVQFP--GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 365 -~~~~g~~~~~~~~--~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
.+..++++|++++ +.+..++...+.+ +||.+.++. .+++|+++ ..+++++++++++|++++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~~~------~~~iRl~~~~~~~~e~i~~~~~~l~~~l 343 (347)
T 1jg8_A 278 PEDVKTNMVILRTDNLKVNAHGFIEALRN-SGVLANAVS------DTEIRLVTHKDVSRNDIEEALNIFEKLF 343 (347)
T ss_dssp GGGCCSSEEEEECTTSSSCHHHHHHHHHH-HTEECEEEE------TTEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred cCCCcceEEEEEcccccCCHHHHHHHHHH-CCCEEecCC------CCeEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 3456788999997 3456777777765 599998752 46899996 348999999999999875
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-30 Score=247.02 Aligned_cols=318 Identities=14% Similarity=0.068 Sum_probs=208.3
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCC-CCCcEEEcCChHHHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGI-EEGDIFVSDGAKCDISRL 142 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~-~~~~i~~~~G~~~al~~l 142 (433)
++||++.+.++.+.|+.+.+++. .. .+| ..+.+.+++++.+.+++ +++++++++|+++++.++
T Consensus 29 ~v~~~~~~~~~~~~~~~v~~a~~----~~------~~~------~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~ 92 (374)
T 2aeu_A 29 ALYDLSGLSGGFLIDEKDKALLN----TY------IGS------SYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILAT 92 (374)
T ss_dssp GCEECSSCCCCCCCCHHHHHHHT----ST------THH------HHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHH
T ss_pred ceeeecccCCCCCCCHHHHHHHH----Hh------cCc------hHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHH
Confidence 68999998888889999988875 11 011 33445555554443365 457899999999999974
Q ss_pred HHhcCCCCEEEEeCCCChhhhh---hHHHhCCcccccccccccceEEEeecCccCCcccCCCCCCCccE-EEEcCCCCcc
Q 045431 143 QIVFGSNVTMAVQDPSYPAYVD---SSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDI-IFFCSPNNPT 218 (433)
Q Consensus 143 ~~l~~~gd~Vl~~~p~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~l~~p~nPt 218 (433)
...+ +||+|++++|+|+++.. .++..| .+++.+ .+.+ .+ ... .+++++ |++++|||||
T Consensus 93 ~~~~-~gd~Vl~~~~~y~~~~~~~~~~~~~g------------~~~~~v-~d~~-~l-~~~--~~~~~~~v~~~~p~npt 154 (374)
T 2aeu_A 93 ILAL-KPKKVIHYLPELPGHPSIERSCKIVN------------AKYFES-DKVG-EI-LNK--IDKDTLVIITGSTMDLK 154 (374)
T ss_dssp HHHH-CCSEEEEECSSSSCCTHHHHHHHHTT------------CEEEEE-SCHH-HH-HTT--CCTTEEEEEECBCTTSC
T ss_pred HHhC-CCCEEEEecCCCCccHHHHHHHHHcC------------cEEEEe-CCHH-HH-Hhc--CCCccEEEEEccCCCCC
Confidence 3344 99999999998877554 455556 355555 3221 11 122 357899 8889999999
Q ss_pred ccCCCHHHHHHHHHHHHHcCCEEEEecccccccc-CCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccc
Q 045431 219 GAAATREQLTRLVQFAKDNGSIIVYDSAYALYIS-DDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLF 297 (433)
Q Consensus 219 G~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~ 297 (433)
|. +.+++++|.++|++||+++|+||+|+.+.. .....+.... +..++++|+||++ +|+|+||++++++++
T Consensus 155 G~--~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~----~~di~~~S~sK~l--~g~~~G~~~~~~~~~- 225 (374)
T 2aeu_A 155 VI--ELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKL----GADLVVTSTDKLM--EGPRGGLLAGKKELV- 225 (374)
T ss_dssp BC--CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHH----TCSEEEEETTSSS--SSCSCEEEEEEHHHH-
T ss_pred CC--CcccHHHHHHHHHHcCCEEEEECCcccccccccccCCcccc----CCcEEEecCcccc--cCcceEEEEECHHHH-
Confidence 97 788999999999999999999999987642 1101111222 2248899999986 578999999998875
Q ss_pred cCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHH----HHHHHHHHhhc----CCeee-cCCC
Q 045431 298 SDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKEN----TDIIVETFNSL----GFKVY-GGKN 368 (433)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~----~~~l~~~l~~~----g~~~~-~~~~ 368 (433)
+.+..........++.+.|.++.++++....+.+++..+..+.. ++.+.+.|... |+.+. .+.+
T Consensus 226 -------~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g 298 (374)
T 2aeu_A 226 -------DKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTG 298 (374)
T ss_dssp -------HHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSE
T ss_pred -------HHHHHhhccccCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCce
Confidence 56665554333446788888888887654321222222222222 45555555542 55554 3444
Q ss_pred ccEEEEECCCC----ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc-C--hhHHHHHHHHHHHhh
Q 045431 369 APYVWVQFPGR----SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG-H--RGNVLEACKRFKHLY 432 (433)
Q Consensus 369 g~~~~~~~~~~----~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~--~~~l~~~l~~l~~~l 432 (433)
.++.|..++.. ++.++...+++++||.+.||..| +.+++++||+++. + +.+++++++.|++++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~~g~~~-~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l 368 (374)
T 2aeu_A 299 FVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGM-PGASKSLRIDLTSRDAERIDDNYIIKAIVESI 368 (374)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTSSS-CSSCCSEEEETTSGGGGGSCHHHHHHHHHHHH
T ss_pred EEEEeecccccccccchHHHHHHHHHhCCEEEecCCCC-CCCCCeEEEEcCCchHHHHHHHHHHHHHHHHH
Confidence 44555555421 01225556777779999999877 3456789999854 2 334778777777665
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-30 Score=248.84 Aligned_cols=335 Identities=13% Similarity=0.074 Sum_probs=218.7
Q ss_pred CCCceEEecCCCC--CCC-C-hHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCC-CCcEEEcCCh
Q 045431 61 PDAEVISLGIGDT--TEP-I-PEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIE-EGDIFVSDGA 135 (433)
Q Consensus 61 ~~~~~i~l~~g~~--~~~-~-~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~-~~~i~~~~G~ 135 (433)
++...+|++.+.+ ++. . |+.+.+++.+++.+.. .|+...+..+++.++++.+.+.++++ +++|++|+|+
T Consensus 40 ~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~------~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg 113 (419)
T 2eo5_A 40 DGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLA------HAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSG 113 (419)
T ss_dssp TSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSC------CCSCSCSCCHHHHHHHHHHHHHSSCSSCEEEEEESSH
T ss_pred CCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCc------cccccccCCHHHHHHHHHHHHhCCCCcCCEEEEeCch
Confidence 4556899988774 333 3 7999999999986531 12111222334444444444434666 7899999999
Q ss_pred HHHHHHH-HHhcC-CCCEEEEeCCCChhhhhhHHHhCCcc-cc-cccccccceEEEeecCccCC----------------
Q 045431 136 KCDISRL-QIVFG-SNVTMAVQDPSYPAYVDSSVIMGQTG-EF-QKDAEKYGKIEYMRCTAENG---------------- 195 (433)
Q Consensus 136 ~~al~~l-~~l~~-~gd~Vl~~~p~~~~~~~~~~~~g~~~-~~-~~~~~~~~~~~~~~~~~~~~---------------- 195 (433)
++++.++ ..+.. +||+|++.+|+|+++.......+... .+ .........++.++.+.+..
T Consensus 114 ~ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~ 193 (419)
T 2eo5_A 114 TEAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVN 193 (419)
T ss_dssp HHHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhHH
Confidence 9999974 43333 39999999999987655443332110 00 00111112456666543210
Q ss_pred c-ccCCC-CC-------CCccEEEEcCCC-Ccccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCC
Q 045431 196 F-FPDLS-TV-------ARTDIIFFCSPN-NPTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPG 264 (433)
Q Consensus 196 ~-~~~~~-~~-------~~~~~i~l~~p~-nPtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 264 (433)
. ..+++ +. ++++ +++++|+ ||||. +.+.+++++|.++|++||+++|+||+|.++.+.+....+....
T Consensus 194 ~~~~~l~~~~i~~~~~~~~~~-~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~- 271 (419)
T 2eo5_A 194 RVIEFIEDYIFVNLVPPEEVA-GIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFN- 271 (419)
T ss_dssp HHHHHHHHTHHHHTCCGGGEE-EEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGT-
T ss_pred HHHHHHHHHHHhhccCCCCEE-EEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcC-
Confidence 0 11233 21 2334 5667785 67896 6788999999999999999999999999876654322222222
Q ss_pred CCcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHH
Q 045431 265 AKEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIG 343 (433)
Q Consensus 265 ~~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~ 343 (433)
...+++ ||||.++ +| +|+||++++++++ . + ......+.+.++++|.++.++++. +++..+
T Consensus 272 ~~~d~~---t~sK~~~-~G~~riG~~~~~~~~~-~--------~-~~~~~~t~~~n~~~~~aa~aal~~-----~~~~~~ 332 (419)
T 2eo5_A 272 TVPDVI---TLAKALG-GGIMPIGATIFRKDLD-F--------K-PGMHSNTFGGNALACAIGSKVIDI-----VKDLLP 332 (419)
T ss_dssp CCCSEE---EECGGGG-TTTSCCEEEEEEGGGC-C--------C-------CCCCCHHHHHHHHHHHHH-----HHHHHH
T ss_pred CCCCEE---Eeccccc-CCccceEEEEEchHhh-c--------C-CcccCCCCCCCHHHHHHHHHHHHH-----HHHHHH
Confidence 222333 8999998 69 9999999998874 2 1 112234556789999999988863 133788
Q ss_pred HHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCC--CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChh
Q 045431 344 FYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPG--RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRG 419 (433)
Q Consensus 344 ~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~ 419 (433)
+++++++++.+.|+++ +....+ .|+|+|+++.+ .... +...++ ++||.+.|+. .+++||++ ..+++
T Consensus 333 ~~~~~~~~l~~~L~~~-~~~~~~-~g~~~~i~~~~~~~~~~-~~~~l~-~~Gv~v~~~~------~~~lRis~~~~~t~e 402 (419)
T 2eo5_A 333 HVNEIGKIFAEELQGL-ADDVRG-IGLAWGLEYNEKKVRDR-IIGESF-KRGLLLLPAG------RSAIRVIPPLVISEE 402 (419)
T ss_dssp HHHHHHHHHHHHHTTS-SSEEEE-ETTEEEEECSCHHHHHH-HHHHHH-HTTEECEEET------TTEEEECCCTTCCHH
T ss_pred HHHHHHHHHHHHHHHh-hhheEe-eeEEEEEEEecCccHHH-HHHHHH-HCCCEEecCC------CCEEEEECCCCCCHH
Confidence 8999999999999886 433433 57888999842 1233 666665 5699999863 47899974 56999
Q ss_pred HHHHHHHHHHHhh
Q 045431 420 NVLEACKRFKHLY 432 (433)
Q Consensus 420 ~l~~~l~~l~~~l 432 (433)
++++++++|++++
T Consensus 403 ~i~~~l~~l~~~l 415 (419)
T 2eo5_A 403 EAKQGLDILKKVI 415 (419)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999875
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-30 Score=250.09 Aligned_cols=321 Identities=9% Similarity=0.106 Sum_probs=223.9
Q ss_pred eEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCC--CCCCHHHHHHHHHHHhccCCCCCCcEE-EcCChHHHHHH
Q 045431 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA--EQGEKPLRAAIASTFYKDLGIEEGDIF-VSDGAKCDISR 141 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~la~~l~~~~~~~~~~i~-~~~G~~~al~~ 141 (433)
.+.|+.+ +.+.++.+.+++.+. ....|.+ .....++++.+++++ ++++++++ +++|+++++.+
T Consensus 12 ~~~~~p~--p~~~~~~v~~a~~~~--------~~~~~~~~~~~~~~~l~~~la~~~----g~~~~~~~~~~~s~t~al~~ 77 (416)
T 3isl_A 12 RTIMTPG--PVEVDPRVLRVMSTP--------VVGQFDPAFTGIMNETMEMLRELF----QTKNRWAYPIDGTSRAGIEA 77 (416)
T ss_dssp CEECSSS--SCCCCHHHHHHTTSC--------CCCTTSHHHHHHHHHHHHHHHHHT----TCCCSEEEEEESCHHHHHHH
T ss_pred ceeecCC--CcCcCHHHHHHhccc--------CCCCccHHHHHHHHHHHHHHHHHh----CCCCCcEEEecCcHHHHHHH
Confidence 3444433 345666666655441 1222321 223455666666665 77777766 88899999987
Q ss_pred -HHHhcCCCCEEEEeCCCChh--hhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--C-CCccEEEEcCC
Q 045431 142 -LQIVFGSNVTMAVQDPSYPA--YVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--V-ARTDIIFFCSP 214 (433)
Q Consensus 142 -l~~l~~~gd~Vl~~~p~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~-~~~~~i~l~~p 214 (433)
+..++++||+|++++|+|++ +...++..| .+++.++.+.++.++.+ +++ . +++++|++++|
T Consensus 78 ~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~ 145 (416)
T 3isl_A 78 VLASVIEPEDDVLIPIYGRFGYLLTEIAERYG------------ANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVHG 145 (416)
T ss_dssp HHHHHCCTTCEEEEEESSHHHHHHHHHHHHTT------------CEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESE
T ss_pred HHHHhcCCCCEEEEecCCcccHHHHHHHHhcC------------CeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEcc
Confidence 67789999999999999987 666777778 47888888755432222 221 1 47899999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecccc
Q 045431 215 NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKE 294 (433)
Q Consensus 215 ~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~ 294 (433)
|||||.+++ +++|.++|++||+++|+|++|+.... +.++.. .+..+++.|+||+++ ++.++|+++++++
T Consensus 146 ~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~---~~~~~~----~~~d~~~~s~~K~l~-g~~g~g~~~~~~~ 214 (416)
T 3isl_A 146 ETSTGRIHP---LKAIGEACRTEDALFIVDAVATIGGC---EVKVDE----WKIDAAIGGTQKCLS-VPSGMAPITYNER 214 (416)
T ss_dssp ETTTTEECC---CHHHHHHHHHTTCEEEEECTTTTTTS---CCCTTT----TTCSEEECCSSSTTC-CCSSEEEEEECHH
T ss_pred CCCCceecC---HHHHHHHHHHcCCEEEEECCccccCC---Ccchhh----cCCCEEEecCccccC-CCCCeEEEEECHH
Confidence 999999999 78899999999999999999874221 222221 234589999999863 5556899999988
Q ss_pred ccccCCcchhHHHHHH--------------------------------------HhhccCCCcHHHHHHHHHhcCcCChh
Q 045431 295 LLFSDGFPVAKDFNRI--------------------------------------VCTCFNGASNISQAGGLACLSPEGFK 336 (433)
Q Consensus 295 ~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~q~~~~~~l~~~~~~ 336 (433)
++ +.+... ........+...+.++.++++.....
T Consensus 215 ~~--------~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~ 286 (416)
T 3isl_A 215 VA--------DVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEE 286 (416)
T ss_dssp HH--------HHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred HH--------HHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 74 222211 01112244666666665665522212
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCeeecCCC---ccEEEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEE
Q 045431 337 AVHEVIGFYKENTDIIVETFNSLGFKVYGGKN---APYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRV 412 (433)
Q Consensus 337 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi 412 (433)
.+++.+++++++++++.+.|++.|+.+..+.+ +.++|+.++ +.+..++...+++++||.+.+|.. +..++++||
T Consensus 287 g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~--~~~~~~iRi 364 (416)
T 3isl_A 287 GLETRFERHRHHEAALAAGIKAMGLRLFGDDSCKMPVVTCVEIPGGIDGESVRDMLLAQFGIEIASSFG--PLAGKIWRI 364 (416)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCS--TTTTTEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCEeccCccccCCcEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCC--CCCCCEEEE
Confidence 27889999999999999999998888776543 678899997 566778888877767999999873 334689999
Q ss_pred ee--ccChhH-HHHHHHHHHHhh
Q 045431 413 SA--FGHRGN-VLEACKRFKHLY 432 (433)
Q Consensus 413 ~~--~~~~~~-l~~~l~~l~~~l 432 (433)
++ ..++++ +++++++|++++
T Consensus 365 ~~~~~~~~~e~i~~~~~~l~~~~ 387 (416)
T 3isl_A 365 GTMGYSCRKENVLFVLAGLEAVL 387 (416)
T ss_dssp ECCGGGCSHHHHHHHHHHHHHHH
T ss_pred ecccCCCcHHHHHHHHHHHHHHH
Confidence 97 235555 999999999875
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.9e-31 Score=252.19 Aligned_cols=314 Identities=13% Similarity=0.127 Sum_probs=221.5
Q ss_pred CCCChHHHHHHHHHHHhhcccCCCCCCCCC--CCCCHHHHHHHHHHHhccCCCCCC-cEEEcCChHHHHHH-HHHhcCCC
Q 045431 74 TEPIPEVITSALAKRSYALSTQEGYSGYGA--EQGEKPLRAAIASTFYKDLGIEEG-DIFVSDGAKCDISR-LQIVFGSN 149 (433)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~la~~l~~~~~~~~~-~i~~~~G~~~al~~-l~~l~~~g 149 (433)
+.++|+.+.+++.+.+. ..|.+ .....++++.+++++ +.+.+ +|++|+|+++++.+ +..++++|
T Consensus 31 p~~~~~~v~~a~~~~~~--------~~~~~~~~~~~~~l~~~la~~~----~~~~~~~v~~~~gg~~al~~~~~~~~~~g 98 (393)
T 3kgw_A 31 PSNLAPRVLAAGSLRMI--------GHMQKEMLQIMEEIKQGIQYVF----QTRNPLTLVVSGSGHCAMETALFNLLEPG 98 (393)
T ss_dssp CCCCCHHHHHHTTCCCC--------CTTSHHHHHHHHHHHHHHHHHH----TCCCSEEEEESCCTTTHHHHHHHHHCCTT
T ss_pred CCCCCHHHHHHhccccc--------CcccHHHHHHHHHHHHHHHHHh----CCCCCcEEEEeCCcHHHHHHHHHhcCCCC
Confidence 45678888877765321 11211 223456677777766 66544 59999999999987 67788999
Q ss_pred CEEEEeCCCChhh--hhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CC-CccEEEEcCCCCccccCCC
Q 045431 150 VTMAVQDPSYPAY--VDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VA-RTDIIFFCSPNNPTGAAAT 223 (433)
Q Consensus 150 d~Vl~~~p~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~-~~~~i~l~~p~nPtG~~~~ 223 (433)
|+|+++.++|.+. ...+...| .+++.++.+.++.++.+ +++ .+ ++++|++++||||||.+++
T Consensus 99 d~vl~~~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~ 166 (393)
T 3kgw_A 99 DSFLTGTNGIWGMRAAEIADRIG------------ARVHQMIKKPGEHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQP 166 (393)
T ss_dssp CEEEEEESSHHHHHHHHHHHHTT------------CEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC
T ss_pred CEEEEEeCCchhHHHHHHHHHcC------------CceEEEeCCCCCCCCHHHHHHHHhhCCCcEEEEeccCCcchhhcc
Confidence 9999999988643 55666667 47888887654333222 221 13 7899999999999999998
Q ss_pred HHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcch
Q 045431 224 REQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPV 303 (433)
Q Consensus 224 ~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~ 303 (433)
+++|.++|++||+++|+|++|+... .+..+.. .+..+++.|+||+++ ++.++||++++++++
T Consensus 167 ---l~~i~~l~~~~~~~li~De~~~~g~---~~~~~~~----~~~d~~~~s~sK~~~-~~~g~g~~~~~~~~~------- 228 (393)
T 3kgw_A 167 ---LDGFGELCHRYQCLLLVDSVASLGG---VPIYMDQ----QGIDIMYSSSQKVLN-APPGISLISFNDKAK------- 228 (393)
T ss_dssp ---CTTHHHHHHHTTCEEEEECTTTTTT---SCCCTTT----TTCCEEEEESSSTTC-CCSSCEEEEECHHHH-------
T ss_pred ---HHHHHHHHHHcCCEEEEECCccccC---cccchhh----cCCCEEEecCccccc-CCCceeEEEECHHHH-------
Confidence 7789999999999999999987321 1221111 234588899999874 445599999998874
Q ss_pred hHHHHHHHh-----------------------hccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcC
Q 045431 304 AKDFNRIVC-----------------------TCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLG 360 (433)
Q Consensus 304 ~~~~~~~~~-----------------------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 360 (433)
+.+..... ....+.+...+.++.++++.....++++++++++++++.+.+.|+++|
T Consensus 229 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 307 (393)
T 3kgw_A 229 -YKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEMG 307 (393)
T ss_dssp -HHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -HHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33322110 112334666666666665532223468889999999999999999988
Q ss_pred CeeecCC----CccEEEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee-c--cChhHHHHHHHHHHHhh
Q 045431 361 FKVYGGK----NAPYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA-F--GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 361 ~~~~~~~----~g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~-~--~~~~~l~~~l~~l~~~l 432 (433)
+.+..+. .+.++|+.++ +.+..++...+++++||.+.+|..+ ..++++|+++ . .+++++++++++|++++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~--~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l 385 (393)
T 3kgw_A 308 LKFFVKDPEIRLPTITTVTVPAGYNWRDIVSYVLDHFSIEISGGLGP--TEERVLRIGLLGYNATTENVDRVAEALREAL 385 (393)
T ss_dssp CCBSSSSGGGBCSSEEEEECCTTBCHHHHHHHHHHHHCEECBCCCGG--GTTTEEEEECCGGGCCHHHHHHHHHHHHHHH
T ss_pred CeeccCChhhcCCeEEEEeCCCCCCHHHHHHHHHHhCCEEEeCCccc--CCCCEEEEEecccCCCHHHHHHHHHHHHHHH
Confidence 8776332 3567789987 5567778888777669999998753 3467999997 4 38999999999999876
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=240.14 Aligned_cols=323 Identities=12% Similarity=0.098 Sum_probs=223.3
Q ss_pred eEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCC-CCCCCHHHHHHHHHHHhccCCC-CCCcEEEcCChHHHHHH-
Q 045431 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYG-AEQGEKPLRAAIASTFYKDLGI-EEGDIFVSDGAKCDISR- 141 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~-~~~g~~~lr~~la~~l~~~~~~-~~~~i~~~~G~~~al~~- 141 (433)
.+.|.-|. .+.|+.+.+++.+++.+. ...|. ...+..++.+.+.+++.+.+++ ++++|++|+|+++++.+
T Consensus 5 ~~~~~p~p--~~~~~~v~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~ 77 (362)
T 3ffr_A 5 KIYFTPGP--SELYPTVRQHMITALDEK-----IGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERI 77 (362)
T ss_dssp CEEECSSS--CCCCTTHHHHHHHHHHTT-----TTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHH
T ss_pred ceeccCCC--cCCCHHHHHHHHHHhcCC-----ccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHH
Confidence 46666553 457888888888887642 11111 1223334555555555543466 46899999999999997
Q ss_pred HHHhcCCCCEEEEeCCCChh-hhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCCCCCccEEEEcCCCCccc
Q 045431 142 LQIVFGSNVTMAVQDPSYPA-YVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LSTVARTDIIFFCSPNNPTG 219 (433)
Q Consensus 142 l~~l~~~gd~Vl~~~p~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~l~~p~nPtG 219 (433)
+..++++ +.+++..+.|.. +...++..| .+++.++.+.+..++.+ ++..+++++|++++|+||||
T Consensus 78 ~~~l~~~-~~i~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~~~~~~v~~~~~~nptG 144 (362)
T 3ffr_A 78 IQNCVEK-KSFHCVNGSFSKRFYEFAGELG------------REAYKEEAAFGKGFYPADITVPADAEIICLTHNETSSG 144 (362)
T ss_dssp HHHHCSS-EEEEEECSHHHHHHHHHHHHTT------------CEEEEEECCTTCCCCGGGCCCCTTCCEEEEESEETTTT
T ss_pred HHhccCC-cEEEEcCcHHHHHHHHHHHHhC------------CCeEEEecCCCCCCCHHHHhccCCccEEEEEcCCCCcc
Confidence 5777777 555566666652 233555566 47778887644333222 33346899999999999999
Q ss_pred cCCCHHHHHHHHHHHHHc-CCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccc-ccccceeeeeccccccc
Q 045431 220 AAATREQLTRLVQFAKDN-GSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAG-FTGVRLGWTVIPKELLF 297 (433)
Q Consensus 220 ~~~~~~~~~~i~~~a~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~-~~G~r~G~l~~~~~~~~ 297 (433)
.+++ +++|.++|++| |+++|+|++|+.... +.++. +..+++.|+||+++ ++| +|+++++++++
T Consensus 145 ~~~~---l~~i~~la~~~p~~~li~D~a~~~~~~---~~~~~------~~d~~~~s~~K~~~~~~G--~g~~~~~~~~~- 209 (362)
T 3ffr_A 145 VSMP---VEDINTFRDKNKDALIFVDAVSSLPYP---KFDWT------KIDSVFFSVQKCFGLPAG--LGVWILNDRVI- 209 (362)
T ss_dssp EECC---HHHHTTSGGGSTTSEEEEECTTTTTSS---CCCTT------SCSEEEEETTSTTCCCSC--CEEEEEEHHHH-
T ss_pred eeCC---HHHHHHHHHhCCCCEEEEecccccCCc---ccChh------HCcEEEEecccccCCCCc--eEEEEECHHHH-
Confidence 9999 77888899999 999999999885322 11111 13488999999998 667 68888888774
Q ss_pred cCCcchhHHHHHHHh---------------------hccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHH
Q 045431 298 SDGFPVAKDFNRIVC---------------------TCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETF 356 (433)
Q Consensus 298 ~~~~~~~~~~~~~~~---------------------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l 356 (433)
+.+..... ....+.+...+.++.++++......+++..++++++++++.+.|
T Consensus 210 -------~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L 282 (362)
T 3ffr_A 210 -------EKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYI 282 (362)
T ss_dssp -------HHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHH
Confidence 33333221 11344566666666555542111236888899999999999999
Q ss_pred hhc-CCeeecC----CCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec--cChhHHHHHHHHHH
Q 045431 357 NSL-GFKVYGG----KNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF--GHRGNVLEACKRFK 429 (433)
Q Consensus 357 ~~~-g~~~~~~----~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~l~~~l~~l~ 429 (433)
+++ |+.+..+ ..+.++|+.+++ +..++.+.+.++ ||.+.+|..+ .+++++||++. .+++++++++++|+
T Consensus 283 ~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~-gi~~~~g~~~--~~~~~iRis~~~~~~~e~i~~l~~~l~ 358 (362)
T 3ffr_A 283 ESSKVFSFGVEDAKLRSMTTIVANTTM-LPGEINKILEPF-DMAVGAGYGS--KKETQIRIANFPAHSLEQVHKLVQTLK 358 (362)
T ss_dssp HHCSSEEESSSCGGGBCSSEEEEEESS-CHHHHHHHHGGG-TEEEEECSGG--GTTTEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHccCceeccCChhhcCCceEEEecCC-CHHHHHHHHHHC-CeEEecCccc--cCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 998 8887652 246688899887 677777777666 9999998543 34679999964 48999999999999
Q ss_pred HhhC
Q 045431 430 HLYK 433 (433)
Q Consensus 430 ~~l~ 433 (433)
++++
T Consensus 359 ~~~~ 362 (362)
T 3ffr_A 359 EKIG 362 (362)
T ss_dssp HHTC
T ss_pred HHhC
Confidence 8763
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-30 Score=251.02 Aligned_cols=337 Identities=12% Similarity=0.085 Sum_probs=221.9
Q ss_pred CCCceEEecCCC--CCC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHH
Q 045431 61 PDAEVISLGIGD--TTE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 61 ~~~~~i~l~~g~--~~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~ 137 (433)
++...+||+.+. ..+ ..++.+.+++.+++.+... ....| ..++++++++.+.+..+ +++|++|+|+++
T Consensus 55 ~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~--~~~~~-----~~~~~~~l~~~la~~~g--~~~v~~~~ggte 125 (420)
T 2pb2_A 55 QGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWH--TSNVF-----TNEPALRLGRKLIDATF--AERVLFMNSGTE 125 (420)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCC--CCTTS-----CCHHHHHHHHHHHHHSS--CSEEEEESSHHH
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHHHHHhccc--ccCcc-----CCHHHHHHHHHHHhhCC--CCeEEEeCCHHH
Confidence 456789998773 222 3678999999999865321 11123 23445555555544234 589999999999
Q ss_pred HHHH-HHHhcC-------CC-CEEEEeCCCChhhhhh-HHHhCCcccccccccccceEEEeecCccCCcccCCCCCCCcc
Q 045431 138 DISR-LQIVFG-------SN-VTMAVQDPSYPAYVDS-SVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTD 207 (433)
Q Consensus 138 al~~-l~~l~~-------~g-d~Vl~~~p~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (433)
++.+ +..+.. +| +.|++.+|+|+++... ....|.......+......+..++.++...+...+ .++++
T Consensus 126 A~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~le~~i--~~~~~ 203 (420)
T 2pb2_A 126 ANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDLHAVKAVM--DDHTC 203 (420)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECTTCHHHHHHHC--CTTEE
T ss_pred HHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecCCCHHHHHHHh--ccCce
Confidence 9997 444443 67 5999999999887544 33444321100011111234455542111111111 25788
Q ss_pred EEEEcCCCCcccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccce
Q 045431 208 IIFFCSPNNPTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRL 286 (433)
Q Consensus 208 ~i~l~~p~nPtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~ 286 (433)
+|+++.++|++|. +++.+++++|.++|++||+++|+||+|.++.+.+.+..+......+| ++ ||||.++ +|+|+
T Consensus 204 ~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~~~d-ii---t~sK~l~-~G~~i 278 (420)
T 2pb2_A 204 AVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPD-IL---TSAKALG-GGFPV 278 (420)
T ss_dssp EEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCS-EE---EECGGGG-TTSCC
T ss_pred EEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCCCCC-eE---Eeccccc-CCCce
Confidence 8888777888884 69999999999999999999999999988766554332222221233 33 7899998 99999
Q ss_pred eeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc--CC---
Q 045431 287 GWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL--GF--- 361 (433)
Q Consensus 287 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g~--- 361 (433)
||++++++++ +.+.......+.+.+++++.++.++|+.... +++.++++++++++.+.|+++ ++
T Consensus 279 G~~~~~~~l~--------~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 347 (420)
T 2pb2_A 279 SAMLTTQEIA--------SAFHVGSHGSTYGGNPLACAVAGAAFDIINT---PEVLQGIHTKRQQFVQHLQAIDEQFDIF 347 (420)
T ss_dssp EEEEECHHHH--------TTCC----CCEECCCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCE
T ss_pred EEEEEhHHHH--------HhhcCCCcCcccCcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 9999998864 2222222334456788999888887763222 456777888888888888764 22
Q ss_pred eeecCCCccEEEEECCCC---ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 362 KVYGGKNAPYVWVQFPGR---SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 362 ~~~~~~~g~~~~~~~~~~---~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
....+ .|.++|++++.. +..++...+++ +||.+.|+. ++++||+ +..+++++++++++|++++
T Consensus 348 ~~~~~-~g~~~~v~~~~~~~~~~~~l~~~l~~-~Gi~v~~~~------~~~iRl~~~~~~t~eei~~~~~~l~~~l 415 (420)
T 2pb2_A 348 SDIRG-MGLLIGAELKPKYKGRARDFLYAGAE-AGVMVLNAG------ADVMRFAPSLVVEEADIHEGMQRFAQAV 415 (420)
T ss_dssp EEEEE-ETTEEEEEECGGGTTCHHHHHHHHHH-TTEECEESS------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEe-cceEEEEEECCCchHHHHHHHHHHHH-CCCEEEeCC------CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 22333 578889998742 45667777766 599999863 5789999 4679999999999999875
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-30 Score=246.42 Aligned_cols=319 Identities=14% Similarity=0.085 Sum_probs=220.7
Q ss_pred CCCChHHHHHHHHHHHhhcccCCCCCCCC-CCCCCHHHHHHHHHHHhccCCCC--CCcEEEcCChHHHHHHH-HHhcCCC
Q 045431 74 TEPIPEVITSALAKRSYALSTQEGYSGYG-AEQGEKPLRAAIASTFYKDLGIE--EGDIFVSDGAKCDISRL-QIVFGSN 149 (433)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~-~~~g~~~lr~~la~~l~~~~~~~--~~~i~~~~G~~~al~~l-~~l~~~g 149 (433)
+.++|+.+.+++.+.+.. +.|. ...+..++|+.+++++ +++ +++|++|+|+++++.++ ..+++
T Consensus 8 p~~~~~~v~~a~~~~~~~-------~~~~~~~~~~~~l~~~la~~~----g~~~~~~~v~~t~g~t~a~~~~~~~~~~-- 74 (353)
T 2yrr_A 8 PTPIPERVQKALLRPMRG-------HLDPEVLRVNRAIQERLAALF----DPGEGALVAALAGSGSLGMEAGLANLDR-- 74 (353)
T ss_dssp SCCCCHHHHGGGGSCCCC-------TTCHHHHHHHHHHHHHHHHHH----CCCTTCEEEEESSCHHHHHHHHHHTCSC--
T ss_pred CCCCCHHHHHHHhccccc-------ccCHHHHHHHHHHHHHHHHHh----CCCCCCceEEEcCCcHHHHHHHHHHhcC--
Confidence 356788888888775531 1221 1245788899999887 654 78999999999999985 45555
Q ss_pred CEEEEeCCCChhh--hhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CC-CccEEEEcCCCCccccCCC
Q 045431 150 VTMAVQDPSYPAY--VDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VA-RTDIIFFCSPNNPTGAAAT 223 (433)
Q Consensus 150 d~Vl~~~p~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~-~~~~i~l~~p~nPtG~~~~ 223 (433)
|+|++++|+|+++ ...++..| .+++.++.+.++.++.+ +++ .+ ++++|++++|+||||.+++
T Consensus 75 d~vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 142 (353)
T 2yrr_A 75 GPVLVLVNGAFSQRVAEMAALHG------------LDPEVLDFPPGEPVDPEAVARALKRRRYRMVALVHGETSTGVLNP 142 (353)
T ss_dssp CCEEEEECSHHHHHHHHHHHHTT------------CCEEEEECCTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECC
T ss_pred CcEEEEcCCCchHHHHHHHHHcC------------CceEEEeCCCCCCCCHHHHHHHHHhCCCCEEEEEccCCCcceecC
Confidence 8999999999885 33445566 47788887654322222 221 13 7889999999999999998
Q ss_pred HHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccc-ccccceeeeeccccccccCC--
Q 045431 224 REQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAG-FTGVRLGWTVIPKELLFSDG-- 300 (433)
Q Consensus 224 ~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~-~~G~r~G~l~~~~~~~~~~~-- 300 (433)
+++|.++|++||++||+|++|+.. . .+.++..++ ..+++.|++|+++ .+| +||++++++++..-.
T Consensus 143 ---~~~i~~l~~~~~~~li~D~a~~~~-~--~~~~~~~~~----~d~~~~s~~K~~~~~~g--~G~~~~~~~~~~~l~~~ 210 (353)
T 2yrr_A 143 ---AEAIGALAKEAGALFFLDAVTTLG-M--LPFSMRAMG----VDYAFTGSQKCLSAPPG--LAPIAASLEARKAFTGK 210 (353)
T ss_dssp ---HHHHHHHHHHHTCEEEEECTTTTT-T--SCCCHHHHT----CSEEECCTTSTTCCCSS--CEEEEECHHHHHHCCCC
T ss_pred ---HHHHHHHHHHcCCeEEEEcCcccc-c--ccccccccC----ceEEEecCcccccCCCc--eEEEEECHHHHHHhccC
Confidence 678999999999999999999632 1 133333331 2488899999663 345 799999988752110
Q ss_pred cch---hHHHHHHH--hhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCC--CccEEE
Q 045431 301 FPV---AKDFNRIV--CTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGK--NAPYVW 373 (433)
Q Consensus 301 ~~~---~~~~~~~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~--~g~~~~ 373 (433)
+.. ...+.... .....+.+...+.++.++++......+++.+++++++++++.+.|++.|+++..+. .++++|
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~ 290 (353)
T 2yrr_A 211 RGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKARGFRPYPKASPLPTVLV 290 (353)
T ss_dssp SCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCEESCSSSBCTTEEE
T ss_pred CCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCccccCccCCCeEEE
Confidence 000 00010111 11223456666666556554221123678889999999999999998888876654 567778
Q ss_pred EECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHH-HHHHHHHHhh
Q 045431 374 VQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVL-EACKRFKHLY 432 (433)
Q Consensus 374 ~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~-~~l~~l~~~l 432 (433)
+.++ +.+..++...+.++ ||.+.+|..|. .++++|+++ ..++++++ +++++|++++
T Consensus 291 ~~~~~~~~~~~~~~~l~~~-gi~v~~g~~~~--~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l 350 (353)
T 2yrr_A 291 VRPPEGVDADRLVRALYAE-GVAVAGGIGPT--RGQVLRLGLMGEGARREAYQAFLKALDRAL 350 (353)
T ss_dssp EECCTTCCHHHHHHHHHHT-TEECEECCGGG--TTTCEEEECSGGGSCHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHC-CEEEeCCcccc--CCCeEEEecCccCCHHHHHHHHHHHHHHHH
Confidence 9987 55667777777665 99999998653 357899997 35888998 9999999875
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=248.70 Aligned_cols=348 Identities=9% Similarity=0.025 Sum_probs=224.3
Q ss_pred cCCCCceEEecCCC---CCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCCh
Q 045431 59 KYPDAEVISLGIGD---TTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGA 135 (433)
Q Consensus 59 ~~~~~~~i~l~~g~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~ 135 (433)
..+++..|||+.|. +--..++.+.+++.+++.+.. . ....+..+++.++++++.+..+.+.+ |++|+|+
T Consensus 45 d~~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~--~-----~~~~~~~~~~~~la~~l~~~~~~~~~-v~~~~gg 116 (452)
T 3n5m_A 45 DIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLS--Y-----FPMSQSHEPAIKLAEKLNEWLGGEYV-IFFSNSG 116 (452)
T ss_dssp ETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCC--C-----CCTTSEEHHHHHHHHHHHHHHTSCEE-EEEESSH
T ss_pred ECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcC--C-----cccccCCHHHHHHHHHHHHhCCCCce-EEEeCch
Confidence 34567799998883 323368999999999987532 1 12234456666666666553355555 9999999
Q ss_pred HHHHHH-HHHhc-----C---CCCEEEEeCCCChhhhhhHHHhCCccccc-ccccccceEEEeecCccCC--c-------
Q 045431 136 KCDISR-LQIVF-----G---SNVTMAVQDPSYPAYVDSSVIMGQTGEFQ-KDAEKYGKIEYMRCTAENG--F------- 196 (433)
Q Consensus 136 ~~al~~-l~~l~-----~---~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~--~------- 196 (433)
++++.. +..+. . ++++|++.+|+|+++......++....+. .+.........++...... +
T Consensus 117 seA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (452)
T 3n5m_A 117 SEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIY 196 (452)
T ss_dssp HHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGG
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhH
Confidence 999997 44444 4 78999999999999876666555432211 0111112233333211000 0
Q ss_pred ----ccCCCC------CCCccEEEEcCC-CCccccCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCC
Q 045431 197 ----FPDLST------VARTDIIFFCSP-NNPTGAAA-TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPG 264 (433)
Q Consensus 197 ----~~~~~~------~~~~~~i~l~~p-~nPtG~~~-~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 264 (433)
..++++ .+++++|+++.+ || ||.++ +.+++++|.++|++||+++|+||+|.++...+..........
T Consensus 197 ~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~ 275 (452)
T 3n5m_A 197 DVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDV 275 (452)
T ss_dssp GCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTC
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccccchhhhcCC
Confidence 111211 134566666666 89 99766 888899999999999999999999998866554332222222
Q ss_pred CCcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHH------HHHhhccCCCcHHHHHHHHHhcCcCChhH
Q 045431 265 AKEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFN------RIVCTCFNGASNISQAGGLACLSPEGFKA 337 (433)
Q Consensus 265 ~~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~q~~~~~~l~~~~~~~ 337 (433)
.++ +.||||.++ +| +|+||++++++++ +.+. .+....+.+.++++++++.++++....
T Consensus 276 ~~d----i~t~sK~l~-~G~~~ig~~~~~~~i~--------~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-- 340 (452)
T 3n5m_A 276 KPD----IITMAKGIT-SAYLPLSATAVKREIY--------EAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIEN-- 340 (452)
T ss_dssp CCS----EEEECGGGG-TTSSCCEEEEEEHHHH--------GGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHHH--
T ss_pred CCC----EEeeccccc-CCCcceEEEEECHHHH--------HHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHHh--
Confidence 222 347999998 69 9999999998875 3331 112335566889999999988863211
Q ss_pred HHHHHHHHHHHHHHHHHHHh----hc-CCeeecCCCccEEEEECCC--CC--------hHHHHHHHHHcCCeEecCCCCC
Q 045431 338 VHEVIGFYKENTDIIVETFN----SL-GFKVYGGKNAPYVWVQFPG--RS--------SWDVFSEILEKTHVVTTPGSGF 402 (433)
Q Consensus 338 ~~~~~~~~~~~~~~l~~~l~----~~-g~~~~~~~~g~~~~~~~~~--~~--------~~~~~~~l~~~~gi~v~~g~~f 402 (433)
+.+.++++++.+.+.+.|+ ++ .+.... ..|.++++.+.. .. ..++...+++ +||.+.|+..|
T Consensus 341 -~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~~ 417 (452)
T 3n5m_A 341 -ENLIERSAQMGSLLLEQLKEEIGEHPLVGDIR-GKGLLVGIELVNDKETKEPIDNDKIASVVNACKE-KGLIIGRNGMT 417 (452)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEE-ESSSCEEEEEEEETTTTEECCHHHHHHHHHHHHH-TTEECEECTTS
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEE-EEEEEEEEEEecCCcccCCCCHHHHHHHHHHHHH-CCcEEeecCcc
Confidence 2334444555555555554 33 233344 356677777631 11 1345556555 59999999877
Q ss_pred CCCCCCeEEEe--eccChhHHHHHHHHHHHhhC
Q 045431 403 GPGGEGFIRVS--AFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 403 ~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l~ 433 (433)
....++++||+ +..+++++++++++|+++++
T Consensus 418 ~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 450 (452)
T 3n5m_A 418 TAGYNNILTLAPPLVISSEEIAFVIGTLKTAME 450 (452)
T ss_dssp STTCCCEEEECCCTTCCHHHHHHHHHHHHHHHT
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 66667899997 56699999999999998864
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-30 Score=246.26 Aligned_cols=320 Identities=12% Similarity=0.104 Sum_probs=215.8
Q ss_pred EecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCC--CCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HH
Q 045431 67 SLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYG--AEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQ 143 (433)
Q Consensus 67 ~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~--~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~ 143 (433)
.++.++|+++.++.+.+++.+++....+......|+ +.....++++.+++++ +.+ +.|++++| ++++.+ +.
T Consensus 24 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g~~-~~i~~~sG-~~a~~~~l~ 97 (398)
T 2rfv_A 24 TGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLE----RGE-AGLATASG-ISAITTTLL 97 (398)
T ss_dssp TCCSSCCCCCCSBCCCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHH----TCS-EEEEESSH-HHHHHHHHH
T ss_pred CCCcCCCCcCCCccccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHh----CCC-cEEEECCH-HHHHHHHHH
Confidence 578888888777766666666554211111222333 3456678888888876 554 55555555 588886 67
Q ss_pred HhcCCCCEEEEeCCCChhhhhhH----HHhCCcccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccc
Q 045431 144 IVFGSNVTMAVQDPSYPAYVDSS----VIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTG 219 (433)
Q Consensus 144 ~l~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG 219 (433)
.++++||+|++++|+|+++...+ ...| .+++.++.++...+...+ .+++++|++++|+||||
T Consensus 98 ~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~d~~~l~~~i--~~~~~~v~~~~~~nptG 163 (398)
T 2rfv_A 98 TLCQQGDHIVSASAIYGCTHAFLSHSMPKFG------------INVRFVDAAKPEEIRAAM--RPETKVVYIETPANPTL 163 (398)
T ss_dssp HHCCTTCEEEEESSSCHHHHHHHHTHHHHTT------------CEEEEECTTSHHHHHHHC--CTTEEEEEEESSBTTTT
T ss_pred HHhCCCCEEEEcCCCcccHHHHHHHHHHHcC------------CEEEEeCCCCHHHHHHhc--CCCCeEEEEECCCCCCC
Confidence 78899999999999999987766 5666 467777764211111111 25789999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccce-eeeecccccccc
Q 045431 220 AAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRL-GWTVIPKELLFS 298 (433)
Q Consensus 220 ~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~-G~l~~~~~~~~~ 298 (433)
.+++ +++|.++|++||+++|+||+|+.+.+.. ++ .+ +.++++.|+||+++.+|+|+ ||++++++++
T Consensus 164 ~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~---~~-~~----~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~-- 230 (398)
T 2rfv_A 164 SLVD---IETVAGIAHQQGALLVVDNTFMSPYCQQ---PL-QL----GADIVVHSVTKYINGHGDVIGGIIVGKQEFI-- 230 (398)
T ss_dssp BCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC---GG-GG----TCSEEEEETTTTTTCSSCCCCEEEEECHHHH--
T ss_pred cccC---HHHHHHHHHHcCCEEEEECCCcccccCC---ch-hh----CCcEEEEeCcccccCCCCceEEEEEECHHHH--
Confidence 9998 8999999999999999999999654431 12 22 34699999999998899998 9999998875
Q ss_pred CCcchhHHHHHHHhhc-cCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcC---------------Ce
Q 045431 299 DGFPVAKDFNRIVCTC-FNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLG---------------FK 362 (433)
Q Consensus 299 ~~~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g---------------~~ 362 (433)
.+.+....... ....+++.+.++.+.++.. ....+...++.+.+.+.|++.+ +.
T Consensus 231 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~ 300 (398)
T 2rfv_A 231 -----DQARFVGLKDITGGCMSPFNAWLTLRGVKTL-----GIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYE 300 (398)
T ss_dssp -----HHHHHTHHHHTTCCCCCHHHHHHHHHHHTTH-----HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHH
T ss_pred -----HHHHHHHHHhCCCCCCCHHHHHHHHhhhhhH-----HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHH
Confidence 11444444433 4457888898888888631 3334455667777777777642 22
Q ss_pred eecC---CCccEEEEECCCCChHHHHHHHHHc---CCeEecCCCCCC-------------C--------CCCCeEEEeec
Q 045431 363 VYGG---KNAPYVWVQFPGRSSWDVFSEILEK---THVVTTPGSGFG-------------P--------GGEGFIRVSAF 415 (433)
Q Consensus 363 ~~~~---~~g~~~~~~~~~~~~~~~~~~l~~~---~gi~v~~g~~f~-------------~--------~~~~~iRi~~~ 415 (433)
+..+ ..+.++++++++. .+....++++ .|+.+.+|..|. + ..++++|||+.
T Consensus 301 ~~~~~~~~~g~~~~~~~~~~--~~~~~~l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~ 378 (398)
T 2rfv_A 301 LGQRQMSLPGGIISFEIAGG--LEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVG 378 (398)
T ss_dssp HHHHHCSSCCSEEEEEETTH--HHHHHHHHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECC
T ss_pred HHHhhCCCCceEEEEEEcCC--HHHHHHHHHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEec
Confidence 2221 2466777788742 2223334433 388888887642 0 12689999974
Q ss_pred c--ChhHHHHHHHHHHHh
Q 045431 416 G--HRGNVLEACKRFKHL 431 (433)
Q Consensus 416 ~--~~~~l~~~l~~l~~~ 431 (433)
. ++++++.+++.|+++
T Consensus 379 ~~~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 379 LEDPEDIINDLEHAIRKA 396 (398)
T ss_dssp SSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 3 578888888888764
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-29 Score=242.50 Aligned_cols=341 Identities=11% Similarity=0.035 Sum_probs=220.0
Q ss_pred CCCCceEEecCCC--CCCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChH
Q 045431 60 YPDAEVISLGIGD--TTEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAK 136 (433)
Q Consensus 60 ~~~~~~i~l~~g~--~~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~ 136 (433)
.+++..+||+.+. ..+. .++.+.+++.+++.+.. +.| ..+..++++++++++.+..+ +++|++|+|++
T Consensus 33 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-----~~~--~~~~~~~~~~l~~~la~~~~--~~~v~~~~gg~ 103 (395)
T 3nx3_A 33 DKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLL-----HTS--NLYYNENIAAAAKNLAKASA--LERVFFTNSGT 103 (395)
T ss_dssp TTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCS-----CCC--TTSBCHHHHHHHHHHHHHHT--CSEEEEESSHH
T ss_pred CCCCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhcc-----ccc--cccCCHHHHHHHHHHHHhcC--CCeEEEeCCHH
Confidence 4566789998883 3333 57999999999886432 111 12234555555555544234 68999999999
Q ss_pred HHHHH-HHHhc-------CCCCEEEEeCCCChhhhhhHHHhCCcccc-cccccccceEEEeecCccCCcccCCCCCCCcc
Q 045431 137 CDISR-LQIVF-------GSNVTMAVQDPSYPAYVDSSVIMGQTGEF-QKDAEKYGKIEYMRCTAENGFFPDLSTVARTD 207 (433)
Q Consensus 137 ~al~~-l~~l~-------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (433)
+++.+ +..+. .++|.|++.+|+|+++......++....+ ........++..++.++-..+...+ .++++
T Consensus 104 ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l--~~~~~ 181 (395)
T 3nx3_A 104 ESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYNDISSVEKLV--NEKTC 181 (395)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTTCHHHHHTTC--CTTEE
T ss_pred HHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCCCHHHHHHhc--cCCeE
Confidence 99987 44433 46799999999998876555444422111 0011111244555543211111111 25677
Q ss_pred EEEEcCCCCccccC-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccce
Q 045431 208 IIFFCSPNNPTGAA-ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRL 286 (433)
Q Consensus 208 ~i~l~~p~nPtG~~-~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~ 286 (433)
+|++..++|++|.. ++.+++++|.++|++||+++|+||+|.++...+.+......+.. ..+.||||.++ +|+|+
T Consensus 182 ~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~----~d~~t~sK~~~-~G~~~ 256 (395)
T 3nx3_A 182 AIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQIL----PDIMTSAKALG-CGLSV 256 (395)
T ss_dssp EEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCC----CSEEEECGGGT-TTSCC
T ss_pred EEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCC----CCEEEeccccc-CCCce
Confidence 77776667777765 78889999999999999999999999987655433322222211 22458999998 69999
Q ss_pred eeeeccccc-cccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-hHHHHHHHHHHHHHHHHHHHHhhcC-Cee
Q 045431 287 GWTVIPKEL-LFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-KAVHEVIGFYKENTDIIVETFNSLG-FKV 363 (433)
Q Consensus 287 G~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~g-~~~ 363 (433)
||+++++++ + +.+.......+...+++++.++.++++.... ..+++.++..+..++.+.+.+.++. +..
T Consensus 257 G~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 328 (395)
T 3nx3_A 257 GAFVINQKVAS--------NSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEFDFCKK 328 (395)
T ss_dssp EEEEECHHHHH--------HHSCTTCCSSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEE
T ss_pred EEEEEchhhhh--------hhcCCcccCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 999999887 4 3333333344556789999988888863211 2234444333444444444444443 333
Q ss_pred ecCCCccEEEEECCCC-ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 364 YGGKNAPYVWVQFPGR-SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 364 ~~~~~g~~~~~~~~~~-~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
.. ..|+++|+.++.. ...++...+++ +||.+.|+. ++++||++ ..+++++++++++|++++
T Consensus 329 ~~-~~g~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~------~~~iRi~~~~~~t~e~i~~~l~~l~~~l 392 (395)
T 3nx3_A 329 RK-GLGFMQGLSLDKSVKVAKVIQKCQE-NALLLISCG------ENDLRFLPPLILQKEHIDEMSEKLRKAL 392 (395)
T ss_dssp EE-EETTEEEEEECTTSCHHHHHHHHHH-TTEECEEET------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EE-eEEEEEEEEeCCcchHHHHHHHHHH-CCCEEecCC------CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 33 3578999998853 55667667665 499999863 57999984 568999999999999876
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-30 Score=246.46 Aligned_cols=296 Identities=14% Similarity=0.084 Sum_probs=197.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCC--EEEEeCCCChhhhh---hHHHhCC
Q 045431 98 YSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNV--TMAVQDPSYPAYVD---SSVIMGQ 171 (433)
Q Consensus 98 ~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd--~Vl~~~p~~~~~~~---~~~~~g~ 171 (433)
...|++..+..+|++++++++ +.+ +.|++ +|+++++.+ +..++.+|| .|+++.++|..... .....|
T Consensus 40 ~~~y~~~~~~~~l~~~la~~~----~~~-~~i~~-~~G~~a~~~al~~~~~~gd~~~vi~~~~~~~~~~~~~~~~~~~g- 112 (357)
T 3lws_A 40 SDQYGTGAIIEPFEQKFADVL----GMD-DAVFF-PSGTMAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDGLKELHP- 112 (357)
T ss_dssp CEETTEETTHHHHHHHHHHHH----TCS-EEEEE-SCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTTHHHHHSS-
T ss_pred cccccCChHHHHHHHHHHHHh----CCC-cEEEe-cCcHHHHHHHHHHHhhcCCCcEEEecccceeeeeccchhhhccC-
Confidence 346877788999999999998 543 34555 555667665 677788888 67777666655443 233344
Q ss_pred cccccccccccceEEEeecCccCCcccC-CCCCCCccEEEEcCCCCcc-ccCCCHHHHHHHHHHHHHcCCEEEEeccccc
Q 045431 172 TGEFQKDAEKYGKIEYMRCTAENGFFPD-LSTVARTDIIFFCSPNNPT-GAAATREQLTRLVQFAKDNGSIIVYDSAYAL 249 (433)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~l~~p~nPt-G~~~~~~~~~~i~~~a~~~~~~li~De~~~~ 249 (433)
..++.++.+. ..++.+ +++..++++|++++||||| |.+++.+++++|+++|++||++||+|++|..
T Consensus 113 -----------~~~~~v~~~~-~~~d~~~l~~~~~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~ 180 (357)
T 3lws_A 113 -----------IETILVGAAD-RLMTLDEIKALPDIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLF 180 (357)
T ss_dssp -----------CEEEECSCTT-SCCCHHHHHTCCSCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHH
T ss_pred -----------cEEEEecCCC-CCcCHHHHhcCcCcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhh
Confidence 3666666422 222221 3333458999999999998 9999999999999999999999999999872
Q ss_pred c--ccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhcc--CCCcHHHHHH
Q 045431 250 Y--ISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCF--NGASNISQAG 325 (433)
Q Consensus 250 ~--~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~q~~ 325 (433)
. .+.+ .+...+....+ +++.|+||+++.++ .||++++++++ +.+.+...... .....+.+.+
T Consensus 181 ~~~~~~~--~~~~~~~~~~d--~~~~s~sK~~~~~~--gg~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 246 (357)
T 3lws_A 181 EMLPYYE--KTAAEIAGLFD--SIYISFYKGLGGIA--GAILAGPAAFC--------QTARIWKRRYGGDLISLYPYIVS 246 (357)
T ss_dssp HHHHHHT--CCHHHHHTTSS--EEEEESSSTTCCSS--CEEEEECHHHH--------HHHHHHHHHTTCCCSCCHHHHHH
T ss_pred hhhhhcC--CChHHHHhcCC--EEEEeccccCCCCc--eEEEEcCHHHH--------HHHHHHHHHhcCCcccchHHHHH
Confidence 1 1112 12222212223 44789999994233 29999988875 55554432221 1123333444
Q ss_pred HHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCee-ecCCCccEEEEECCCC--C-hHHHHHHHHHcCCeEecCCC
Q 045431 326 GLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKV-YGGKNAPYVWVQFPGR--S-SWDVFSEILEKTHVVTTPGS 400 (433)
Q Consensus 326 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~-~~~~~g~~~~~~~~~~--~-~~~~~~~l~~~~gi~v~~g~ 400 (433)
+...++. +.++ .+++.++++.+.+.|+++ |+.+ ..+..++++|++++.. . ..++...+ .++||.+.||.
T Consensus 247 ~~~~l~~----~~~~-~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~v~~g~ 320 (357)
T 3lws_A 247 ADYYYEL----RKDR-MGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQAADISPKLEQVQ-EETGLGFVGYL 320 (357)
T ss_dssp HHHHHHH----HTTC-HHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEEESCHHHHHHHHHHHH-HHHCEESCSCC
T ss_pred HHHHHHH----HHHH-HHHHHHHHHHHHHHHHhCCCCeeccCCCcceEEEEEecCChHHHHHHHHHHH-HhcCeEEeccc
Confidence 4444442 2222 334677888999999988 8887 3567889999999753 2 34454444 55699999997
Q ss_pred CCCCCCCCeEEEeec-----cChhHHHHHHHHHHHhhC
Q 045431 401 GFGPGGEGFIRVSAF-----GHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 401 ~f~~~~~~~iRi~~~-----~~~~~l~~~l~~l~~~l~ 433 (433)
.|. .+..++|+++. .+.+++++++++|+++++
T Consensus 321 ~~~-~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al~ 357 (357)
T 3lws_A 321 VDK-DGYCSTEISVGDAYGELDQQTRDAGFARLRQAFS 357 (357)
T ss_dssp EEC-SSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC-
T ss_pred ccC-CCceEEEEEecchhhhcCHHHHHHHHHHHHHhcC
Confidence 665 34568999853 478999999999998764
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-30 Score=250.55 Aligned_cols=344 Identities=9% Similarity=-0.001 Sum_probs=217.5
Q ss_pred CCCceEEecCCCC--CCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHH
Q 045431 61 PDAEVISLGIGDT--TEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 61 ~~~~~i~l~~g~~--~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~ 137 (433)
++...+|+..+.+ ++. .++.+.+++.+++.+... ....| ..+++.++++.+.+.+++++++|++|+|+++
T Consensus 41 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~-----~~~~~~~l~~~la~~~~~~~~~v~~~~gg~e 113 (433)
T 1zod_A 41 DGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDH--LFSEM-----LSRPVVDLATRLANITPPGLDRALLLSTGAE 113 (433)
T ss_dssp TCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCC--CCTTC-----CCHHHHHHHHHHHHHSCTTCCEEEEESCHHH
T ss_pred CCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCcc--ccccc-----CCHHHHHHHHHHHHhCCCCcCEEEEeCchHH
Confidence 4556889876653 233 488999999999875321 11233 2234444444444434777899999999999
Q ss_pred HHHHH-HHhc--CCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCc--cCCc-----------ccCCC
Q 045431 138 DISRL-QIVF--GSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTA--ENGF-----------FPDLS 201 (433)
Q Consensus 138 al~~l-~~l~--~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~-----------~~~~~ 201 (433)
++.++ ..+. ..+++|++.+|+|++.............+..++.....+..++... ...+ ..+++
T Consensus 114 a~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le 193 (433)
T 1zod_A 114 SNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAF 193 (433)
T ss_dssp HHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHH
Confidence 99974 3332 3468999999999886654433321111111111112333343321 0011 11122
Q ss_pred C--C----CCccEEEEcCC-CCcccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEe
Q 045431 202 T--V----ARTDIIFFCSP-NNPTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETS 273 (433)
Q Consensus 202 ~--~----~~~~~i~l~~p-~nPtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~ 273 (433)
+ . +++++ ++++| +||||. +.+.+++++|.++|++||++||+||+|+++...+....+......++ +.
T Consensus 194 ~~l~~~~~~~~~~-vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~~~d----i~ 268 (433)
T 1zod_A 194 DLIDRQSSGNLAA-FIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPD----IL 268 (433)
T ss_dssp HHHHHHCCSCEEE-EEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCS----EE
T ss_pred HHHHhcCCCCeEE-EEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCCCCC----EE
Confidence 1 1 34444 55677 588996 57899999999999999999999999998765543222222221122 34
Q ss_pred cccccccccccceeeeeccccccccCCcchhHHHHHHHhh--ccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHH
Q 045431 274 SFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCT--CFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDI 351 (433)
Q Consensus 274 S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 351 (433)
||||.++ +|+|+||++++++++ +.+...... .+.+.++++|.++.++++.... +...+++++++++
T Consensus 269 s~sK~~~-~G~~ig~~~~~~~~~--------~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~~~---~~~~~~~~~~~~~ 336 (433)
T 1zod_A 269 TLSKTLG-AGLPLAAIVTSAAIE--------ERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQR---DGLVARANVMGDR 336 (433)
T ss_dssp EECHHHH-TTSSCEEEEECHHHH--------HHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHH
T ss_pred Eeccccc-CCCCeeEEEEhHHHH--------HhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHH
Confidence 8999998 699999999998874 555442111 4455788999888888752111 2245566666777
Q ss_pred HHHHHhhc----C-CeeecCCCccEEEEECCC---------CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--c
Q 045431 352 IVETFNSL----G-FKVYGGKNAPYVWVQFPG---------RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--F 415 (433)
Q Consensus 352 l~~~l~~~----g-~~~~~~~~g~~~~~~~~~---------~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~ 415 (433)
+.+.|+++ . +.... ..|+++|++++. ....++...++ ++||.+.||..|+ .++++||++ .
T Consensus 337 l~~~l~~l~~~~~~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~~--~~~~lRi~~~~~ 412 (433)
T 1zod_A 337 LRRGLLDLMERFDCIGDVR-GRGLLLGVEIVKDRRTKEPADGLGAKITRECM-NLGLSMNIVQLPG--MGGVFRIAPPLT 412 (433)
T ss_dssp HHHHHHHHHHHCTTEEEEE-EETTEEEEEEEEETTTTEECTTHHHHHHHHHH-HTTEECCEECCTT--SCCEEEECCCTT
T ss_pred HHHHHHHHHHhCCCeEEEE-EEEEEEEEEEecCccccCCChHHHHHHHHHHH-HCCCeEeccCCCC--CCCEEEEECCcC
Confidence 76666553 2 23333 357888998863 12455666666 4599999988764 357999974 5
Q ss_pred cChhHHHHHHHHHHHhh
Q 045431 416 GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 416 ~~~~~l~~~l~~l~~~l 432 (433)
.+++++++++++|++++
T Consensus 413 ~t~~~i~~~l~~l~~~l 429 (433)
T 1zod_A 413 VSEDEIDLGLSLLGQAI 429 (433)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 68999999999998875
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=248.31 Aligned_cols=350 Identities=12% Similarity=0.060 Sum_probs=224.4
Q ss_pred hcCCCCceEEecCCC--CCCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCC-CCcEEEcC
Q 045431 58 LKYPDAEVISLGIGD--TTEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIE-EGDIFVSD 133 (433)
Q Consensus 58 ~~~~~~~~i~l~~g~--~~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~-~~~i~~~~ 133 (433)
...+++..|||..+. ..+. .++.+.+++.+++.+. ..|....+..+++.++++++.+..+.+ +++|++|+
T Consensus 59 ~d~~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~------~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~ 132 (453)
T 4ffc_A 59 VDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHF------THTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFN 132 (453)
T ss_dssp EETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHC------SCCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEES
T ss_pred EeCCCCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhc------cccccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeC
Confidence 344567899998773 3333 5899999999998753 223333455677777777776544443 58999999
Q ss_pred ChHHHHHH-HHHhc--CCCCEEEEeCCCChhhhhhHHHhCCcc--cccccccccceEEEeecCc----cCCcc-------
Q 045431 134 GAKCDISR-LQIVF--GSNVTMAVQDPSYPAYVDSSVIMGQTG--EFQKDAEKYGKIEYMRCTA----ENGFF------- 197 (433)
Q Consensus 134 G~~~al~~-l~~l~--~~gd~Vl~~~p~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~----~~~~~------- 197 (433)
|+++++.+ +.... ..++.|++.+++|+++......++... ....+......+..++... ..+..
T Consensus 133 sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 212 (453)
T 4ffc_A 133 SGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARR 212 (453)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHH
Confidence 99999997 43332 356899999999998876666654321 1111111112344444431 10111
Q ss_pred --cCCCC--CCCccEEEEcCCCCccc--cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEE
Q 045431 198 --PDLST--VARTDIIFFCSPNNPTG--AAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIE 271 (433)
Q Consensus 198 --~~~~~--~~~~~~i~l~~p~nPtG--~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~ 271 (433)
..+++ .++..++++++|.|++| .+.+.+.+++|.++|++||++||+||+|.++...+...........++
T Consensus 213 ~~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pd---- 288 (453)
T 4ffc_A 213 AISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPD---- 288 (453)
T ss_dssp HHHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCS----
T ss_pred HHHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCCCcc----
Confidence 01111 23455677789988877 455888999999999999999999999998866554332222222222
Q ss_pred EecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-hHHHHHHHHHHHHHH
Q 045431 272 TSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-KAVHEVIGFYKENTD 350 (433)
Q Consensus 272 i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~ 350 (433)
+.||||.++ +|+|+||++++++++ +.+.......+.+.++++|+++.++++.... ..+++.++..+..++
T Consensus 289 i~t~sK~~~-~G~~~G~~~~~~~i~--------~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~ 359 (453)
T 4ffc_A 289 IVTMAKGIA-GGMPLSAVTGRAELM--------DAVYAGGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTS 359 (453)
T ss_dssp EEEECGGGG-TTSSCEEEEEEHHHH--------TTSCTTSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred hHhhhhhhc-CCcCeEEEEECHHHH--------hhhcccCcCCCCCcCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 457999998 699999999998875 3333334455667899999999988863211 122333333333333
Q ss_pred HHHHHHhhcC-CeeecCCCccEEEEECCC--------CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChh
Q 045431 351 IIVETFNSLG-FKVYGGKNAPYVWVQFPG--------RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRG 419 (433)
Q Consensus 351 ~l~~~l~~~g-~~~~~~~~g~~~~~~~~~--------~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~ 419 (433)
.+.+.+.++. +.... ..|.++|+.+.. ....++...+++ +||.+.|+..| .+++||++ ..+++
T Consensus 360 ~l~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~~~~~~t~e 433 (453)
T 4ffc_A 360 RLSALAEEVDIIGEVR-GRGAMLAIEIVKPGTLEPDAALTKSIAAEALS-QGVLILTCGTF----GNVIRLLPPLVIGDD 433 (453)
T ss_dssp HHHHHHHHCSSEEEEE-EETTEEEEEEBCTTSCCBCHHHHHHHHHHHHH-TTEECCEECTT----SCEEEECCCTTCCHH
T ss_pred HHHHHHhhCCCeEEEE-eeceEEEEEEecCcccCCCHHHHHHHHHHHHh-CCCEEecCCCC----CCEEEEECCCCCCHH
Confidence 4444444443 33333 357888888732 113445556555 59999997654 36899984 56899
Q ss_pred HHHHHHHHHHHhh
Q 045431 420 NVLEACKRFKHLY 432 (433)
Q Consensus 420 ~l~~~l~~l~~~l 432 (433)
++++++++|++++
T Consensus 434 ~i~~~l~~l~~~l 446 (453)
T 4ffc_A 434 LLDEGITALSDII 446 (453)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999876
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=248.09 Aligned_cols=348 Identities=8% Similarity=-0.035 Sum_probs=228.5
Q ss_pred CCCCceEEecCCC--CCC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChH
Q 045431 60 YPDAEVISLGIGD--TTE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAK 136 (433)
Q Consensus 60 ~~~~~~i~l~~g~--~~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~ 136 (433)
.+++..|||+.|. ..+ ..++.+.+++.+++.+... .|....+..+++.++++++.+..+.++++|++|+|++
T Consensus 48 ~~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~-----~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGs 122 (460)
T 3gju_A 48 NNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAY-----YHAYVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGS 122 (460)
T ss_dssp TTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSC-----CCCCTTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHH
T ss_pred CCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccc-----cccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCchH
Confidence 4567789998772 223 3579999999999876431 2323345556777777777664566788999999999
Q ss_pred HHHHH-HHHhc--------CCCCEEEEeCCCChhhhhhHHHhCCcccc-cccccccceEEEeecCc-----cCCcc----
Q 045431 137 CDISR-LQIVF--------GSNVTMAVQDPSYPAYVDSSVIMGQTGEF-QKDAEKYGKIEYMRCTA-----ENGFF---- 197 (433)
Q Consensus 137 ~al~~-l~~l~--------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~---- 197 (433)
+++.+ +..+. .+++.|++.+|+|+++......++....+ ..++.....+..++... +.+..
T Consensus 123 eA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 202 (460)
T 3gju_A 123 DANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQF 202 (460)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHH
Confidence 99997 44444 35699999999999987666655432221 11111112334444221 10111
Q ss_pred -----cCCCC-----C-CCccEEEEcCCCCcccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCC
Q 045431 198 -----PDLST-----V-ARTDIIFFCSPNNPTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGA 265 (433)
Q Consensus 198 -----~~~~~-----~-~~~~~i~l~~p~nPtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~ 265 (433)
.++++ . +++++|++..++|++|. +++.+++++|.++|++||+++|+||+|.++...+...........
T Consensus 203 ~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~ 282 (460)
T 3gju_A 203 SQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIK 282 (460)
T ss_dssp HHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCC
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCC
Confidence 11221 1 34455554444677776 778889999999999999999999999988665543322222222
Q ss_pred CcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHH-------HHhhccCCCcHHHHHHHHHhcCcCCh-h
Q 045431 266 KEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNR-------IVCTCFNGASNISQAGGLACLSPEGF-K 336 (433)
Q Consensus 266 ~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~q~~~~~~l~~~~~-~ 336 (433)
++ +.+|||+++ +| +|+||++++++++ +.+.. +....+.+.++++|+++.++|+.... .
T Consensus 283 pd----i~t~sK~l~-gG~~~lg~v~~~~~i~--------~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~ 349 (460)
T 3gju_A 283 PD----LITIAKGLT-SAYAPLSGVIVADRVW--------QVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEMD 349 (460)
T ss_dssp CS----EEEECGGGT-TTSSCCEEEEEEHHHH--------HHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHHTT
T ss_pred CC----eeeeehhhc-CCCCCeEEEEECHHHH--------HHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 23 337899997 67 8999999998885 44532 13344566889999999988873211 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC-CeeecCCCccEEEEECCCCC------------hHHHHHHHHHcCCeEecCCCCCC
Q 045431 337 AVHEVIGFYKENTDIIVETFNSLG-FKVYGGKNAPYVWVQFPGRS------------SWDVFSEILEKTHVVTTPGSGFG 403 (433)
Q Consensus 337 ~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~~~g~~~~~~~~~~~------------~~~~~~~l~~~~gi~v~~g~~f~ 403 (433)
.+++.++..+..++.+.+.+++++ +....+ .|.++++.+.... ..++...++++ ||.+.|+.
T Consensus 350 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~--- 424 (460)
T 3gju_A 350 LVTNAGETGAYFRAELAKAVGGHKNVGEVRG-DGMLAAVEFVADKDDRVFFDASQKIGPQVATALAAS-GVIGRAMP--- 424 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTTEEEEEE-ETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHT-TEECEECS---
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEEee-eeEEEEEEEccCccccccccchHHHHHHHHHHHHHC-CeEEecCC---
Confidence 355555566666666666666663 444443 5678888876211 33555666554 99999864
Q ss_pred CCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 404 PGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 404 ~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
..+++||+ +..+++++++++++|++++
T Consensus 425 --~~~~iRi~~~~~~t~e~i~~~l~~l~~~l 453 (460)
T 3gju_A 425 --QGDILGFAPPLCLTREQADIVVSKTADAV 453 (460)
T ss_dssp --SSCEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred --CCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 34799999 5679999999999999876
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-29 Score=240.91 Aligned_cols=322 Identities=11% Similarity=0.040 Sum_probs=214.2
Q ss_pred eEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCC--CcEEEcCChHHHHHH-
Q 045431 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEE--GDIFVSDGAKCDISR- 141 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~--~~i~~~~G~~~al~~- 141 (433)
..+|+.|. .++|+.+.+++.+.+. ..|. .+..++.+++.+++.+.+++++ +.+++|+|+++++.+
T Consensus 20 ~~~~~pgp--~~~~~~v~~a~~~~~~--------~~~~--~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~ 87 (376)
T 3f0h_A 20 MLNFTVGP--VMSSEEVRAIGAEQVP--------YFRT--TEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAV 87 (376)
T ss_dssp CEECSSSS--CCCCHHHHHHHTSCCC--------CCSS--HHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHH
T ss_pred ceeecCCC--CCCcHHHHHHhcCCCC--------CCCC--HHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHH
Confidence 45555553 5678888888776432 1221 1334555555555554336654 345569999999997
Q ss_pred HHHhcCCCCEEEEeCCCChhhh--hhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEEEEcCCCC
Q 045431 142 LQIVFGSNVTMAVQDPSYPAYV--DSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIFFCSPNN 216 (433)
Q Consensus 142 l~~l~~~gd~Vl~~~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~~p~n 216 (433)
+..++++||+|++++|+|.+.. ......| .+++.++.+.+..++.+ +++ .++++++++++|+|
T Consensus 88 ~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~~~~~~~~v~~~~~~n 155 (376)
T 3f0h_A 88 VMNCFTKKDKVLVIDGGSFGHRFVQLCEIHE------------IPYVALKLEHGKKLTKEKLYEYDNQNFTGLLVNVDET 155 (376)
T ss_dssp HHHHCCTTCCEEEEESSHHHHHHHHHHHHTT------------CCEEEEECCTTCCCCHHHHHTTTTSCCCEEEEESEET
T ss_pred HHhccCCCCeEEEEeCChhhHHHHHHHHHcC------------CceEEEeCCCCCCCCHHHHHHhhccCceEEEEecccC
Confidence 6778899999999999877744 2344445 36777777643333222 222 36789999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccc-ccccceeeeeccccc
Q 045431 217 PTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAG-FTGVRLGWTVIPKEL 295 (433)
Q Consensus 217 PtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~-~~G~r~G~l~~~~~~ 295 (433)
|||.+++ +++|.++|++||+++|+|++|+.+.. +..+... +..+++.|+||+++ .+| +|++++++++
T Consensus 156 ptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~---~~~~~~~----~~d~~~~s~~K~l~~~~G--~g~~~~~~~~ 223 (376)
T 3f0h_A 156 STAVLYD---TMMIGEFCKKNNMFFVCDCVSAFLAD---PFNMNEC----GADVMITGSQKVLACPPG--ISVIVLAPRG 223 (376)
T ss_dssp TTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTS---CCCHHHH----TCSEEEEETTTTTCCCSS--CEEEEECHHH
T ss_pred CcceecC---HHHHHHHHHHcCCEEEEEcCccccCc---ccccccc----CccEEEecCcccccCCCc--eEEEEECHHH
Confidence 9999999 88999999999999999999885432 2222222 23488999999997 445 7889888887
Q ss_pred cccCCcchhHHHHHH----------------H-hhccCCCcHHHHHHHHHhcCcCChh-HHHHHHHHHHHHHHHHHHHHh
Q 045431 296 LFSDGFPVAKDFNRI----------------V-CTCFNGASNISQAGGLACLSPEGFK-AVHEVIGFYKENTDIIVETFN 357 (433)
Q Consensus 296 ~~~~~~~~~~~~~~~----------------~-~~~~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~ 357 (433)
+ +.+... . ......++...+.++.+++...... .+++.+++++++++++.+.|+
T Consensus 224 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 295 (376)
T 3f0h_A 224 V--------ERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIK 295 (376)
T ss_dssp H--------HHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred H--------HHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 4 222210 0 0112234443333333333311112 468888899999999999999
Q ss_pred hcCCeeecCCCccE-EEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 358 SLGFKVYGGKNAPY-VWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 358 ~~g~~~~~~~~g~~-~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
++++.+..+..... +++..++.+..++...+.+++||.+.+|.. ....+++||++ +.+++++++++++|++++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~--~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l 371 (376)
T 3f0h_A 296 DLPFELVSESPANGVTSVHPTTANAYDIFLKLKDEYGIWICPNGG--EMKDTIFRVGHIGALTHEDNTTLVNAFKDLQ 371 (376)
T ss_dssp TSSEEECCSSBBTTEEEEEESSSCHHHHHHHHHHHSSEECEECCG--GGTTTCEEEECCSSCCHHHHHHHHHHHHHHH
T ss_pred HcCCccCccccCceEEEEeCCCCCHHHHHHHHHHhCCEEEecCcc--ccCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 88877765433332 333334556777888877767999999842 33467999996 458999999999999876
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.8e-30 Score=249.12 Aligned_cols=344 Identities=10% Similarity=0.058 Sum_probs=219.8
Q ss_pred CCCCceEEecCCCCC--CC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCC-CcEEEcCCh
Q 045431 60 YPDAEVISLGIGDTT--EP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEE-GDIFVSDGA 135 (433)
Q Consensus 60 ~~~~~~i~l~~g~~~--~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~-~~i~~~~G~ 135 (433)
.++..++||+.+.+. +. .++.+.+++.+++.+. ..|+...+..++++++++++.+.++... ++|++|+|+
T Consensus 40 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~------~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg 113 (439)
T 3dxv_A 40 ENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANP------AGATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSG 113 (439)
T ss_dssp TTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSC------SCSCSSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSH
T ss_pred CCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhc------cCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCH
Confidence 456678999988873 33 7899999999988653 2344455677888888888877555555 799999999
Q ss_pred HHHHHH-HHHh--cCCCCEEEEeCCCChhhhhhHHHhCCccc--cc-ccccccceEEEeecCccCCc------ccCCC--
Q 045431 136 KCDISR-LQIV--FGSNVTMAVQDPSYPAYVDSSVIMGQTGE--FQ-KDAEKYGKIEYMRCTAENGF------FPDLS-- 201 (433)
Q Consensus 136 ~~al~~-l~~l--~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~--~~-~~~~~~~~~~~~~~~~~~~~------~~~~~-- 201 (433)
++++.. +..+ +.+++.|++.+|+|++.......++.... +. .+......+..++.+..... ..+++
T Consensus 114 sea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~ 193 (439)
T 3dxv_A 114 SDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEK 193 (439)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHH
Confidence 999987 4433 34677899999999776654443332110 00 00000001223333211000 11111
Q ss_pred ---C-CCCccEEEEcCCCCccccCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccc
Q 045431 202 ---T-VARTDIIFFCSPNNPTGAAA-TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFS 276 (433)
Q Consensus 202 ---~-~~~~~~i~l~~p~nPtG~~~-~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~s 276 (433)
. ..++++|+++.++|++|.+. +.+++++|.++|++||++||+||+|.++...+.+.........++ ++ |||
T Consensus 194 l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~~d-i~---s~s 269 (439)
T 3dxv_A 194 LAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPD-IL---VLG 269 (439)
T ss_dssp HHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCCCS-EE---EEC
T ss_pred HHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCCCCC-EE---EEc
Confidence 1 24566767666677888766 555599999999999999999999998765554333322222222 22 999
Q ss_pred ccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHH
Q 045431 277 KYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETF 356 (433)
Q Consensus 277 K~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l 356 (433)
|+++ +|+|+||++++++++ +.+.......+. .+++++.++.++++.... +...++++++++.+.+.|
T Consensus 270 K~~~-~G~riG~~~~~~~~~--------~~~~~~~~~~t~-~~~~~~~aa~aal~~~~~---~~~~~~~~~~~~~~~~~l 336 (439)
T 3dxv_A 270 KGLG-GGLPLSAVIAPAEIL--------DCASAFAMQTLH-GNPISAAAGLAVLETIDR---DDLPAMAERKGRLLRDGL 336 (439)
T ss_dssp GGGG-TTSCCEEEEEEHHHH--------TSCSSSSCCTTT-TCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHH
T ss_pred chhc-CCcceEEEEECHHHH--------hhhcCCCcCCCc-ccHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHH
Confidence 9998 799999999998875 223222233445 788999888888763211 233444555555555555
Q ss_pred hh----cC-CeeecCCCccEEEEEC--------CC-CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhH
Q 045431 357 NS----LG-FKVYGGKNAPYVWVQF--------PG-RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGN 420 (433)
Q Consensus 357 ~~----~g-~~~~~~~~g~~~~~~~--------~~-~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~ 420 (433)
++ ++ +.... ..|.++|+.+ +. ....++...++++ ||.+.|+.. ..+++||++ ..++++
T Consensus 337 ~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~----~~~~iRi~~~~~~t~e~ 410 (439)
T 3dxv_A 337 SELAKRHPLIGDIR-GRGLACGMELVCDRQSREPARAETAKLIYRAYQL-GLVVYYVGM----NGNVLEFTPPLTITETD 410 (439)
T ss_dssp HHHHHHCTTEEEEE-EETTEEEEEEEEETTTTEECHHHHHHHHHHHHHH-TEECEEEST----TSCEEEECCCTTCCHHH
T ss_pred HHHHHhCCCeEEEE-EEEEEEEEEEecCccccCCCHHHHHHHHHHHHHC-CcEEeecCC----CCCEEEEECCCCCCHHH
Confidence 44 33 33333 3677888877 21 1234566666665 999999843 247899984 568999
Q ss_pred HHHHHHHHHHhh
Q 045431 421 VLEACKRFKHLY 432 (433)
Q Consensus 421 l~~~l~~l~~~l 432 (433)
+++++++|++++
T Consensus 411 i~~~l~~l~~~l 422 (439)
T 3dxv_A 411 IHKALDLLDRAF 422 (439)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999876
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-29 Score=240.78 Aligned_cols=331 Identities=12% Similarity=0.059 Sum_probs=223.9
Q ss_pred eEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCC--CCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-
Q 045431 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAE--QGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR- 141 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~--~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~- 141 (433)
.+.|+.|. .+.++.+.+++.+... ..|.+. ....++++.+++++....++++++|++|+|+++++.+
T Consensus 6 ~~~~~p~p--~~~~~~v~~a~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~ 75 (385)
T 2bkw_A 6 DTLLIPGP--IILSGAVQKALDVPSL--------GHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIF 75 (385)
T ss_dssp CEECSSSS--CCCCHHHHHTTSCCCC--------CTTSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHH
T ss_pred ceeecCCC--cCchHHHHHHHhcccc--------ccCCHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHH
Confidence 45666653 4567777777655322 112121 2456788999999866555678999999999999997
Q ss_pred HHHhc---CCCCEEEEe-CCCChhhh-hhHHHhCCcccccccccccceEEEeec-CccCCcccC-CCC--CC-CccEEEE
Q 045431 142 LQIVF---GSNVTMAVQ-DPSYPAYV-DSSVIMGQTGEFQKDAEKYGKIEYMRC-TAENGFFPD-LST--VA-RTDIIFF 211 (433)
Q Consensus 142 l~~l~---~~gd~Vl~~-~p~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~--~~-~~~~i~l 211 (433)
+..++ ++||+|++. .|.|.... ..++..| .+++.++. +.+..++.+ +++ .+ ++++|++
T Consensus 76 ~~~~~~~~~~gd~vlv~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~~ 143 (385)
T 2bkw_A 76 ASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYG------------AQVDVVRPLKIGESVPLELITEKLSQNSYGAVTV 143 (385)
T ss_dssp HHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTT------------CEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEE
T ss_pred HHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcC------------CceEEEecCCCCCCCCHHHHHHHHhcCCCCEEEE
Confidence 56676 899999887 55665553 5566667 47888887 543222222 221 12 7899999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHc--CCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccc-ccccceee
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKDN--GSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAG-FTGVRLGW 288 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~~--~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~-~~G~r~G~ 288 (433)
++|+||||.+++ +++|.++|++| |++||+|++|+... .+.++..+ +..+++.|+||+++ .+| +||
T Consensus 144 ~~~~nptG~~~~---l~~i~~~~~~~~~~~~li~D~a~~~~~---~~~~~~~~----~~d~~~~s~~K~~~~~~G--~G~ 211 (385)
T 2bkw_A 144 THVDTSTAVLSD---LKAISQAIKQTSPETFFVVDAVCSIGC---EEFEFDEW----GVDFALTASQKAIGAPAG--LSI 211 (385)
T ss_dssp ESEETTTTEECC---HHHHHHHHHHHCTTSEEEEECTTTTTT---SCCCTTTT----TCSEEEEESSSTTCCCSC--EEE
T ss_pred EccCCCcCeEcC---HHHHHHHHHhhCCCCEEEEECccccCC---cccccccc----CceEEEecCccccccCCc--ceE
Confidence 999999999998 77999999999 99999999998421 12222222 34588999999764 456 599
Q ss_pred eeccccccc-cCCc--------------chhHHHHHHHhhc---cCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHH
Q 045431 289 TVIPKELLF-SDGF--------------PVAKDFNRIVCTC---FNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTD 350 (433)
Q Consensus 289 l~~~~~~~~-~~~~--------------~~~~~~~~~~~~~---~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 350 (433)
++++++.+. .-.. ........+.... ....+...+.++.++++......+++++++++++++
T Consensus 212 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~ 291 (385)
T 2bkw_A 212 SLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSD 291 (385)
T ss_dssp EEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred EEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 999887752 1000 0000011111110 134566666666666542111236778889999999
Q ss_pred HHHHHH-hhcCCeeecC-----CCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe-ec-----cCh
Q 045431 351 IIVETF-NSLGFKVYGG-----KNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS-AF-----GHR 418 (433)
Q Consensus 351 ~l~~~l-~~~g~~~~~~-----~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~-~~-----~~~ 418 (433)
++.+.| +++|+.+..+ ..++++|+.+++ ..++...|. ++||.+.+|..+. ..++++||+ +. .++
T Consensus 292 ~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~-~~gi~v~~g~~~~-~~~~~iRis~~~~~~~~~~~ 367 (385)
T 2bkw_A 292 WFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVAD--PPDVIAFLK-SHGVVIAGGIHKD-IGPKYIRIGHMGVTACNKNL 367 (385)
T ss_dssp HHHHHHHTTTCCEESSCSSSTTBCSSCEEEECSC--HHHHHHHHH-HTTEECBCCCCTT-TGGGEEEECCCGGGTSSTTC
T ss_pred HHHHHHHHhcCceecccCcccccCCceEEEecCC--HHHHHHHHH-HCCeEEeCCCCcc-cCCCEEEEEccccccccCCH
Confidence 999999 8888887653 257889999875 566666665 5699999987653 245789999 64 489
Q ss_pred hHHHHHHHHHHHhhC
Q 045431 419 GNVLEACKRFKHLYK 433 (433)
Q Consensus 419 ~~l~~~l~~l~~~l~ 433 (433)
+++++++++|+++++
T Consensus 368 e~i~~~~~~l~~~~~ 382 (385)
T 2bkw_A 368 PYMKNCFDLIKLALQ 382 (385)
T ss_dssp THHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998763
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-29 Score=243.73 Aligned_cols=341 Identities=9% Similarity=-0.011 Sum_probs=220.6
Q ss_pred CCCceEEecCCCC--CCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHH
Q 045431 61 PDAEVISLGIGDT--TEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 61 ~~~~~i~l~~g~~--~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~ 137 (433)
++...+|++.+.+ ++. .++.+.+++.+++.+... .....|. .....++++.+++++ ++++++|++|+|+++
T Consensus 41 ~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~-~~~~~~~-~~~~~~l~~~la~~~----~~~~~~v~~~~ggte 114 (429)
T 1s0a_A 41 DGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSH-VMFGGIT-HAPAIELCRKLVAMT----PQPLECVFLADSGSV 114 (429)
T ss_dssp TSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSC-CCCSSEE-CHHHHHHHHHHHHHS----CTTCCEEEEESSHHH
T ss_pred CCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhccc-ccccccC-CHHHHHHHHHHHHhC----CCCCCEEEEeCCHHH
Confidence 4556889988763 333 589999999999875321 1112442 223456667777665 678899999999999
Q ss_pred HHHH-HHHhc---C----CCCEEEEeCCCChhhhhhHHHhCCcc--cccccccccceEEEeecCcc---CCc-ccC---C
Q 045431 138 DISR-LQIVF---G----SNVTMAVQDPSYPAYVDSSVIMGQTG--EFQKDAEKYGKIEYMRCTAE---NGF-FPD---L 200 (433)
Q Consensus 138 al~~-l~~l~---~----~gd~Vl~~~p~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~---~~~-~~~---~ 200 (433)
++.+ +..+. + |||+|++.+|+|+++.......+... ....+......+..++.+.. ..+ ..+ +
T Consensus 115 a~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 194 (429)
T 1s0a_A 115 AVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGF 194 (429)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHH
T ss_pred HHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHH
Confidence 9987 44332 2 69999999999988654333222100 00000000012334443210 011 112 2
Q ss_pred CC--C---CCccEEEEcCC--CCcccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEE
Q 045431 201 ST--V---ARTDIIFFCSP--NNPTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIET 272 (433)
Q Consensus 201 ~~--~---~~~~~i~l~~p--~nPtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i 272 (433)
++ . +++++ ++++| |||||. ..+.+++++|.++|++||+++|+||+|.++...+....+.... ...++
T Consensus 195 ~~~l~~~~~~~~~-vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~~~~~~-~~~d~--- 269 (429)
T 1s0a_A 195 ARLMAAHRHEIAA-VIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAE-IAPDI--- 269 (429)
T ss_dssp HHHHHHHTTTEEE-EEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGT-CCCSE---
T ss_pred HHHHHhCCCCEEE-EEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHHhhhcC-CCCCE---
Confidence 11 1 24444 55666 589996 5578889999999999999999999999875544322222222 12222
Q ss_pred ecccccccccc-cceeeeeccccccccCCcchhHHHHHH-----HhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHH
Q 045431 273 SSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNRI-----VCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYK 346 (433)
Q Consensus 273 ~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 346 (433)
.||||.++ +| +|+||++++++++ +.+... ....+...+++++.++.++++.... +...++++
T Consensus 270 ~t~sK~l~-~G~~~iG~~~~~~~~~--------~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~~---~~~~~~~~ 337 (429)
T 1s0a_A 270 LCLGKALT-GGTMTLSATLTTREVA--------ETISNGEAGCFMHGPTFMGNPLACAAANASLAILES---GDWQQQVA 337 (429)
T ss_dssp EEECGGGG-TSSSCCEEEEECHHHH--------HHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHT---CHHHHHHH
T ss_pred EEeccccc-CCCccceEEEeCHHHH--------HHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHHh---CCHHHHHH
Confidence 37999998 78 9999999998774 444432 1223445688999888888762111 23556777
Q ss_pred HHHHHHHHHHhhc----CCeeecCCCccEEEEECCC-CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe--eccChh
Q 045431 347 ENTDIIVETFNSL----GFKVYGGKNAPYVWVQFPG-RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS--AFGHRG 419 (433)
Q Consensus 347 ~~~~~l~~~l~~~----g~~~~~~~~g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~~ 419 (433)
++++++.+.|+++ ++....+ .|+++|++++. .+..++...+++ +||.+.|. .+++||+ +..+++
T Consensus 338 ~~~~~l~~~L~~l~~~~~~~~~~~-~g~~~~~~~~~~~~~~~l~~~l~~-~Gi~v~~~-------~~~iRis~~~~~t~e 408 (429)
T 1s0a_A 338 DIEVQLREQLAPARDAEMVADVRV-LGAIGVVETTHPVNMAALQKFFVE-QGVWIRPF-------GKLIYLMPPYIILPQ 408 (429)
T ss_dssp HHHHHHHHHHGGGGGCTTEEEEEE-ETTEEEEEESSCBCHHHHHHHHHH-TTEECCCB-------TTEEEECCCTTCCHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEE-eeEEEEEEECCcccHHHHHHHHHH-CCCEEecc-------CCEEEEECCCCCCHH
Confidence 8888888888775 3433333 46789999874 456667777765 59999873 2689999 467999
Q ss_pred HHHHHHHHHHHhhC
Q 045431 420 NVLEACKRFKHLYK 433 (433)
Q Consensus 420 ~l~~~l~~l~~~l~ 433 (433)
++++++++|+++++
T Consensus 409 ~i~~~~~~l~~~~~ 422 (429)
T 1s0a_A 409 QLQRLTAAVNRAVQ 422 (429)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998763
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-29 Score=245.61 Aligned_cols=348 Identities=9% Similarity=-0.023 Sum_probs=224.2
Q ss_pred cCCCCceEEecCC--CCCC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCCh
Q 045431 59 KYPDAEVISLGIG--DTTE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGA 135 (433)
Q Consensus 59 ~~~~~~~i~l~~g--~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~ 135 (433)
..+++..|||+.| ...+ ..++.+.+++.+++.+.. ..|....+..+++.++++++.+.++.+.++|++|+|+
T Consensus 46 d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~-----~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gg 120 (459)
T 4a6r_A 46 DSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELP-----FYNTFFKTTHPAVVELSSLLAEVTPAGFDRVFYTNSG 120 (459)
T ss_dssp ETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCS-----CCCTTSSSCCHHHHHHHHHHHHHSCTTCCEEEEESSH
T ss_pred ECCCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhcc-----ccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCch
Confidence 3456678999877 3333 357999999999987632 1233334556777777777776557778899999999
Q ss_pred HHHHHH-HHHhcC--------CCCEEEEeCCCChhhhhhHHHhCCccccc-ccccccceEEEeecCc--c-CCc------
Q 045431 136 KCDISR-LQIVFG--------SNVTMAVQDPSYPAYVDSSVIMGQTGEFQ-KDAEKYGKIEYMRCTA--E-NGF------ 196 (433)
Q Consensus 136 ~~al~~-l~~l~~--------~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~--~-~~~------ 196 (433)
++++.. +..++. +++.|++.+|+|+++......++....+. .+......+..++... . +..
T Consensus 121 seA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 200 (459)
T 4a6r_A 121 SESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEF 200 (459)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcccCHHHH
Confidence 999997 444443 57999999999999887666665432211 1111112333444211 0 000
Q ss_pred ----ccCCCC-----CCCccEEEEcCCC-Ccccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCC
Q 045431 197 ----FPDLST-----VARTDIIFFCSPN-NPTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGA 265 (433)
Q Consensus 197 ----~~~~~~-----~~~~~~i~l~~p~-nPtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~ 265 (433)
..++++ .++..++++++|. |++|. +++.+++++|.++|++||+++|+||+|.+|...+...........
T Consensus 201 ~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~ 280 (459)
T 4a6r_A 201 GVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQ 280 (459)
T ss_dssp HHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCC
Confidence 111221 1133345556664 45555 559999999999999999999999999988666543322223222
Q ss_pred CcceEEEecccccccccccceeeeeccccccccCCcchhHHHH---HHHhhccCCCcHHHHHHHHHhcCcCCh-hHHHHH
Q 045431 266 KEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFN---RIVCTCFNGASNISQAGGLACLSPEGF-KAVHEV 341 (433)
Q Consensus 266 ~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~ 341 (433)
++ +.+|||.++.+|+|+||++++++++ +.+. ......+.+.++++|+++.++|+.... ..+++.
T Consensus 281 pd----i~t~sK~l~gg~~~lg~v~~~~~i~--------~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~ 348 (459)
T 4a6r_A 281 PD----LFTAAKGLSSGYLPIGAVFVGKRVA--------EGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQRV 348 (459)
T ss_dssp CS----EEEECGGGGTTSSCCEEEEECHHHH--------HHHHHHCTTHHHHHHCSCHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred CC----eeehhhhhcCCCCCccceeeCHHHH--------HHhhcCCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHH
Confidence 23 3378999974449999999998885 5554 334445566889999999998873211 223443
Q ss_pred H-HHHHHHHHHHHHHHhhc-CCeeecCCCccEEEEECCCCC------------hHHHHHHHHHcCCeEecCCCCCCCCCC
Q 045431 342 I-GFYKENTDIIVETFNSL-GFKVYGGKNAPYVWVQFPGRS------------SWDVFSEILEKTHVVTTPGSGFGPGGE 407 (433)
Q Consensus 342 ~-~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~~~~~~~~------------~~~~~~~l~~~~gi~v~~g~~f~~~~~ 407 (433)
+ +.....++.+.+.|.++ .+....+ .|.++++.+.... ..++...++++ ||.+.|+.
T Consensus 349 ~~~~~~~~~~~l~~~l~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~g------- 419 (459)
T 4a6r_A 349 KDDIGPYMQKRWRETFSRFEHVDDVRG-VGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRN-NLIMRACG------- 419 (459)
T ss_dssp HHTHHHHHHHHHHHHHTTCTTEEEEEE-ETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHT-TEECEEET-------
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEEE-EEEEEEEEEecCccccccccchHHHHHHHHHHHHHC-CeEEecCC-------
Confidence 3 33334444444445544 3444443 5678888775211 34566666655 99999862
Q ss_pred CeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 408 GFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 408 ~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
+++||+ +..+++++++++++|++++
T Consensus 420 ~~iRi~~~~~~t~e~i~~~l~~l~~~l 446 (459)
T 4a6r_A 420 DHIVSAPPLVMTRAEVDEMLAVAERCL 446 (459)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 689999 5679999999999999876
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.3e-29 Score=237.14 Aligned_cols=327 Identities=11% Similarity=0.115 Sum_probs=218.1
Q ss_pred eEEecCCCCCCCChHHHHHHHHHHHhhcccC-CC---CCCCCCCCCCHHHHHHHHHHHhccCCCCCC-c-EEEcCChHHH
Q 045431 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQ-EG---YSGYGAEQGEKPLRAAIASTFYKDLGIEEG-D-IFVSDGAKCD 138 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~-~~---~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~-~-i~~~~G~~~a 138 (433)
++.+..|. .++|+.+.+++.+.+.+.... .. ...|+ .+..++++++.+.+.+.++++++ + |++|+|++++
T Consensus 5 ~~l~~~~~--~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a 80 (362)
T 2c0r_A 5 AYNFNAGP--AALPLEVLERAQAEFVDYQHTGMSIMEMSHRG--AVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQ 80 (362)
T ss_dssp CEECCSSS--CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTS--HHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHH
T ss_pred eeeccCCC--CCCCHHHHHHHHHHHhhhhhcCccccccCCCc--HHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHH
Confidence 56666663 578999999999987543110 00 11221 23455666777776665677664 6 5788999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCChhh--hhhHHHhCCcccccccccccceEEEeecCc--cCCcccCCC---CCCCccEEE
Q 045431 139 ISR-LQIVFGSNVTMAVQDPSYPAY--VDSSVIMGQTGEFQKDAEKYGKIEYMRCTA--ENGFFPDLS---TVARTDIIF 210 (433)
Q Consensus 139 l~~-l~~l~~~gd~Vl~~~p~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~i~ 210 (433)
+.+ +..++++||+|++.++.+... ...++..| . ++.++.+. +.+...+++ -.+++++|+
T Consensus 81 ~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g-~------------~~~v~~~~~~~~~~~~~~~~~~i~~~t~~v~ 147 (362)
T 2c0r_A 81 FAMIPMNFLKEGQTANYVMTGSWASKALKEAKLIG-D------------THVAASSEASNYMTLPKLQEIQLQDNAAYLH 147 (362)
T ss_dssp HHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHHS-C------------EEEEEECGGGTTCSCCCGGGCCCCTTEEEEE
T ss_pred HHHHHHhcCCCCCeEEEEecCcHhHHHHHHHHHhC-C------------eEEEecccccccccCCCHHHcccCCCcCEEE
Confidence 997 678889999999887765543 34555566 2 44455442 122222222 246789999
Q ss_pred EcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeee
Q 045431 211 FCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTV 290 (433)
Q Consensus 211 l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~ 290 (433)
+++|+||||++++ ++++| +|+++|+|++|+.+.. +.++.. . .+++.|+||++|++| +||++
T Consensus 148 ~~~~~n~tG~~~~--~l~~i------~~~~vivD~a~~~~~~---~~~~~~---~---d~~~~s~~K~~g~~G--~G~l~ 208 (362)
T 2c0r_A 148 LTSNETIEGAQFK--AFPDT------GSVPLIGDMSSDILSR---PFDLNQ---F---GLVYAGAQKNLGPSG--VTVVI 208 (362)
T ss_dssp EESEETTTTEECS--SCCCC------TTSCEEEECTTTTTSS---CCCGGG---C---SEEEEETTTTTCCSS--CEEEE
T ss_pred EeCCcCccceecc--ccccc------CCCEEEEEChhhccCC---ccchhH---C---cEEEEeccccccCcC--cEEEE
Confidence 9999999999755 25554 8999999999985422 222222 1 377889999999778 99999
Q ss_pred ccccccccCCcc--hhHHHHH--HHhhccCCCcHHHHHHHHHhcCcCChh-HHHHHHHHHHHHHHHHHHHHhhcC-C-ee
Q 045431 291 IPKELLFSDGFP--VAKDFNR--IVCTCFNGASNISQAGGLACLSPEGFK-AVHEVIGFYKENTDIIVETFNSLG-F-KV 363 (433)
Q Consensus 291 ~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~g-~-~~ 363 (433)
++++++..-.+. ..-.+.. .......+++.+.|.++.++++..... ++++++++++++++++.+.|+++| + .+
T Consensus 209 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 288 (362)
T 2c0r_A 209 VREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRG 288 (362)
T ss_dssp EEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEE
T ss_pred EcHHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 998886321110 0000110 011223456778888888777632222 578899999999999999999987 6 66
Q ss_pred ecC---CCccEEEEECCC-CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec--cChhHHHHHHHHHHHhh
Q 045431 364 YGG---KNAPYVWVQFPG-RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF--GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 364 ~~~---~~g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~l~~~l~~l~~~l 432 (433)
..+ ..+.++|+.++. .+..++...| +++||.+.+|..| .+++|||++ .++++++++++.|++++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~~~gi~~~~g~~~----~~~iRis~~~~~~~e~i~~l~~~l~~~~ 358 (362)
T 2c0r_A 289 CVDVDSRSDMNITFRLASEELEKEFVKAS-EQEGFVGLKGHRS----VGGLRASIYNAVPYESCEALVQFMEHFK 358 (362)
T ss_dssp SSCGGGBCSSEEEEECSCHHHHHHHHHHH-HHTTEESCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCChHHcCCcEEEEEcCCcchHHHHHHHH-HHCCCeeccCCCC----CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 421 245678888873 3445666665 4559999988765 357999975 37999999999998875
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=239.34 Aligned_cols=328 Identities=13% Similarity=0.121 Sum_probs=219.3
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCC-CCC--CCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYS-GYG--AEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDIS 140 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~Y~--~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~ 140 (433)
+.+.|+.+.+. +.|+.+.+++.+.+.......... .|. ......++++.+++++ ++++++|++|+|+++++.
T Consensus 28 ~~~yld~~~~~-~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g~~~~~v~~~~g~t~al~ 102 (416)
T 1qz9_A 28 GVIYLDGNSLG-ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLI----GARDGEVVVTDTTSINLF 102 (416)
T ss_dssp TCEECCTTTSC-CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTT----TCCTTSEEECSCHHHHHH
T ss_pred CeEeecCCCcC-CCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHc----CCCcccEEEeCChhHHHH
Confidence 47888888766 678889999999886421000000 111 1234456777777765 788899999999999997
Q ss_pred H-HHHhc------CCCCE-EEEeCCCChhhhhhHHH----h--CCcccccccccccceEEEeecCccCCcccCCCCCCCc
Q 045431 141 R-LQIVF------GSNVT-MAVQDPSYPAYVDSSVI----M--GQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVART 206 (433)
Q Consensus 141 ~-l~~l~------~~gd~-Vl~~~p~~~~~~~~~~~----~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (433)
+ +..++ ++||+ |++..++|+.+...+.. . | .+++.++. . ..+...+ .+++
T Consensus 103 ~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~-~-~~l~~~i--~~~~ 166 (416)
T 1qz9_A 103 KVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQG------------YTLRLVDS-P-EELPQAI--DQDT 166 (416)
T ss_dssp HHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSS------------CEEEEESS-G-GGHHHHC--STTE
T ss_pred HHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCC------------ceEEEeCc-H-HHHHHHh--CCCc
Confidence 5 55555 89997 45556688765544332 2 5 36677765 1 1111111 2478
Q ss_pred cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccce
Q 045431 207 DIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRL 286 (433)
Q Consensus 207 ~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~ 286 (433)
++|++++|+||||.+++ +++|.++|++||+++|+|++|+.. ..+.++..+. ..+++.|+||+++ +|.++
T Consensus 167 ~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g---~~~~~~~~~~----~d~~~~s~~K~l~-~g~~~ 235 (416)
T 1qz9_A 167 AVVMLTHVNYKTGYMHD---MQALTALSHECGALAIWDLAHSAG---AVPVDLHQAG----ADYAIGCTYKYLN-GGPGS 235 (416)
T ss_dssp EEEEEESBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTT---TSCCCHHHHT----CSEEEECSSSTTC-CCTTC
T ss_pred eEEEEeccccCcccccC---HHHHHHHHHHcCCEEEEEcccccc---CcCCChhhcC----CCEEEecCcccCC-CCCCC
Confidence 99999999999999998 789999999999999999999831 1122332321 2488999999984 78888
Q ss_pred -eeeeccccccccCCcchhHHHHH---------------HHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHH
Q 045431 287 -GWTVIPKELLFSDGFPVAKDFNR---------------IVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTD 350 (433)
Q Consensus 287 -G~l~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 350 (433)
||++++++++..-.+........ .......+.+...+.++.++++.....++++++++++++++
T Consensus 236 ~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~ 315 (416)
T 1qz9_A 236 QAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTD 315 (416)
T ss_dssp CCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999988752211100000000 00112223566666655555542222346788899999999
Q ss_pred HHHHHHhhc----CCeeecCC----CccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec---cChh
Q 045431 351 IIVETFNSL----GFKVYGGK----NAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF---GHRG 419 (433)
Q Consensus 351 ~l~~~l~~~----g~~~~~~~----~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~---~~~~ 419 (433)
++.+.|++. |+.+..+. .+.++|+.++. ..++...+. ++||.+.. .+.+++||++. .+++
T Consensus 316 ~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~l~-~~gi~~~~------~~~~~lRis~~~~~~t~~ 386 (416)
T 1qz9_A 316 LFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPE--GYAVIQALI-DRGVIGDY------REPRIMRFGFTPLYTTFT 386 (416)
T ss_dssp HHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTT--HHHHHHHHH-TTTEECEE------ETTTEEEEECCTTTCCHH
T ss_pred HHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecCC--HHHHHHHHH-hCCcEecc------CCCCeEEEeCcccCCCHH
Confidence 999999886 88887653 35789999874 556666665 55998753 13578999975 4899
Q ss_pred HHHHHHHHHHHhh
Q 045431 420 NVLEACKRFKHLY 432 (433)
Q Consensus 420 ~l~~~l~~l~~~l 432 (433)
++++++++|++++
T Consensus 387 ~i~~~~~~l~~~~ 399 (416)
T 1qz9_A 387 EVWDAVQILGEIL 399 (416)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998875
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-29 Score=245.30 Aligned_cols=347 Identities=10% Similarity=0.013 Sum_probs=223.6
Q ss_pred hcCCCCceEEecCCC--CCCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCC-CCCcEEEcC
Q 045431 58 LKYPDAEVISLGIGD--TTEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGI-EEGDIFVSD 133 (433)
Q Consensus 58 ~~~~~~~~i~l~~g~--~~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~-~~~~i~~~~ 133 (433)
...+++..|||..+. ..+. .++.+.+++.+++.+. ..|....+..+++.++++++.+..+. .+++|++|+
T Consensus 56 ~d~~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~------~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~ 129 (451)
T 3oks_A 56 EDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDF------THTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFN 129 (451)
T ss_dssp EETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTC------SCCTTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEES
T ss_pred EECCCCEEEEcCCCccccccCCCCHHHHHHHHHHHHhc------ccccCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeC
Confidence 344567789998773 3333 5899999999998642 23433445667777888877764443 357999999
Q ss_pred ChHHHHHH-HHHhc--CCCCEEEEeCCCChhhhhhHHHhCCcc--cccccccccceEEEeecCcc--C---Ccc------
Q 045431 134 GAKCDISR-LQIVF--GSNVTMAVQDPSYPAYVDSSVIMGQTG--EFQKDAEKYGKIEYMRCTAE--N---GFF------ 197 (433)
Q Consensus 134 G~~~al~~-l~~l~--~~gd~Vl~~~p~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~--~---~~~------ 197 (433)
|+++++.+ +.... ..++.|++.+++|+++......++... ....+......+..++.... . +..
T Consensus 130 sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 209 (451)
T 3oks_A 130 SGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGE 209 (451)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHH
T ss_pred cHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhH
Confidence 99999997 43333 345899999999998876666554321 11111111124445554310 0 000
Q ss_pred cCC-------CC--CCCccEEEEcCCCCccc--cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCC
Q 045431 198 PDL-------ST--VARTDIIFFCSPNNPTG--AAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAK 266 (433)
Q Consensus 198 ~~~-------~~--~~~~~~i~l~~p~nPtG--~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~ 266 (433)
.++ ++ .++..++++++|.|++| ...+.+.+++|.++|++||++||+||+|.++...+.......+...+
T Consensus 210 ~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~p 289 (451)
T 3oks_A 210 LAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDP 289 (451)
T ss_dssp HHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCC
T ss_pred HHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCCCC
Confidence 001 11 12445567778877666 44577789999999999999999999999876655433333332222
Q ss_pred cceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHH
Q 045431 267 EVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYK 346 (433)
Q Consensus 267 ~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 346 (433)
+ +.||||.++ +|+|+||++++++++ +.+.......+.+.++++|+++.++++.... +++.++++
T Consensus 290 d----i~t~sK~l~-~G~~iG~v~~~~~~~--------~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~ 353 (451)
T 3oks_A 290 D----LIVTAKGIA-GGLPLSAVTGRAEIM--------DSPHVSGLGGTYGGNPIACAAALATIETIES---EGLVARAQ 353 (451)
T ss_dssp S----EEEECGGGG-TTSSCEEEEEEHHHH--------TCSCTTSBCCSSSSCHHHHHHHHHHHHHHHH---TTHHHHHH
T ss_pred C----eeeehhhhh-CCcceEEEEECHHHH--------hhhcCCCcCCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHH
Confidence 2 338999998 699999999998875 3333334455667899999999988863211 23344444
Q ss_pred HHHHHHHHHHh----hcC-CeeecCCCccEEEEECCC--------CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe
Q 045431 347 ENTDIIVETFN----SLG-FKVYGGKNAPYVWVQFPG--------RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS 413 (433)
Q Consensus 347 ~~~~~l~~~l~----~~g-~~~~~~~~g~~~~~~~~~--------~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~ 413 (433)
++.+++.+.|+ ++. +.... ..|.++|+.+.. ....++...+++ +||.+.|+..| .+++||+
T Consensus 354 ~~~~~l~~~L~~~~~~~~~~~~~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~ 427 (451)
T 3oks_A 354 QIEKIMKDRLGRLQAEDDRIGDVR-GRGAMIAMELVKAGTTEPDADLTKALCAGAHA-AGVIVLSCGTY----GNVVRFL 427 (451)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEE-EETTEEEEEEBSTTSCCBCHHHHHHHHHHHHH-TTEECEEECTT----SCEEEEC
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEE-EeeEEEEEEEecCccCCCCHHHHHHHHHHHHh-CCcEEecCCCC----CCEEEEE
Confidence 44444444444 443 33333 357788888732 113445556554 59999997654 3689998
Q ss_pred e--ccChhHHHHHHHHHHHhh
Q 045431 414 A--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 414 ~--~~~~~~l~~~l~~l~~~l 432 (433)
+ ..+++++++++++|++++
T Consensus 428 ~~~~~t~e~i~~~l~~l~~~l 448 (451)
T 3oks_A 428 PPLSIGDDLLNEGLDVLEEVL 448 (451)
T ss_dssp CCTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 4 558999999999999876
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-28 Score=235.26 Aligned_cols=314 Identities=15% Similarity=0.129 Sum_probs=219.1
Q ss_pred CCCCCCC-h---HHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHh
Q 045431 71 GDTTEPI-P---EVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIV 145 (433)
Q Consensus 71 g~~~~~~-~---~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l 145 (433)
++|+++. | +.+.+++.+.+.. ....|.+..+..+||+++++++ +.+ ++|++++| ++++.+ +..+
T Consensus 5 ~~p~f~~~p~~~~~~~~a~~~~l~~-----~~~~~~~~~~~~~l~~~la~~~----~~~-~~i~~~sG-t~al~~~l~~l 73 (388)
T 1b9h_A 5 KAPEFPAWPQYDDAERNGLVRALEQ-----GQWWRMGGDEVNSFEREFAAHH----GAA-HALAVTNG-THALELALQVM 73 (388)
T ss_dssp CCCCCCCSSCCCHHHHHHHHHHHHT-----SCCBTTTCSHHHHHHHHHHHHT----TCS-EEEEESCH-HHHHHHHHHHT
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHc-----CCeeecCCHHHHHHHHHHHHHh----CCC-eEEEeCCH-HHHHHHHHHHc
Confidence 4667775 6 8999999998864 1234666778999999999998 554 67888887 788887 5777
Q ss_pred -cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCC---C--CCCccEEEEcCCCCccc
Q 045431 146 -FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS---T--VARTDIIFFCSPNNPTG 219 (433)
Q Consensus 146 -~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~i~l~~p~nPtG 219 (433)
+++||+|+++.|+|+++...++..| .+++.++++++ ++..+++ + .+++++|+ |+||||
T Consensus 74 ~~~~gd~Vi~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~-~~~~d~~~l~~~i~~~~~~v~---~~n~tG 137 (388)
T 1b9h_A 74 GVGPGTEVIVPAFTFISSSQAAQRLG------------AVTVPVDVDAA-TYNLDPEAVAAAVTPRTKVIM---PVHMAG 137 (388)
T ss_dssp TCCTTCEEEEESSSCTHHHHHHHHTT------------CEEEEECBCTT-TCCBCHHHHHHHCCTTEEEEC---CBCGGG
T ss_pred CCCCcCEEEECCCccHHHHHHHHHcC------------CEEEEEecCCC-cCCCCHHHHHHhcCcCceEEE---EeCCcc
Confidence 7999999999999999999988888 47888888653 2222322 1 24677655 999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCEEEEeccccc-cccCCCCCcccccCCCCcceEEEecccccccccccceeeeecccccccc
Q 045431 220 AAATREQLTRLVQFAKDNGSIIVYDSAYAL-YISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFS 298 (433)
Q Consensus 220 ~~~~~~~~~~i~~~a~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~ 298 (433)
.+.+ +++|.++|++||++||+|++|+. ..+.+ .++..+ . ++++.||||..+++|.|.||++++++.+..
T Consensus 138 ~~~~---l~~i~~la~~~~~~li~D~a~~~g~~~~~--~~~~~~---~--~i~~~S~s~~K~l~g~~~G~~~~~~~~~~~ 207 (388)
T 1b9h_A 138 LMAD---MDALAKISADTGVPLLQDAAHAHGARWQG--KRVGEL---D--SIATFSFQNGKLMTAGEGGAVVFPDGETEK 207 (388)
T ss_dssp CCCC---HHHHHHHHHHHTCCBCEECTTCTTCEETT--EEGGGS---S--SCEEEECCTTSSSCSSSCEEEEECTTCHHH
T ss_pred CcCC---HHHHHHHHHHcCCEEEEecchhcCCccCC--eecccc---c--ceEEEEccCCCcccCCCeEEEEECCHHHHH
Confidence 9987 78899999999999999999985 33322 222222 1 478889996666667799999998763200
Q ss_pred CCcchhHHHHHHHhh---------------ccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCe
Q 045431 299 DGFPVAKDFNRIVCT---------------CFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFK 362 (433)
Q Consensus 299 ~~~~~~~~~~~~~~~---------------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~ 362 (433)
.+.+...... .....+.+...++... .+++++..++++++++++.+.|+++ |+.
T Consensus 208 -----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~-----~~~l~~~~~~~~~~~~~l~~~L~~~~~~~ 277 (388)
T 1b9h_A 208 -----YETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQ-----LARLDEQIAVRDERWTLLSRLLGAIDGVV 277 (388)
T ss_dssp -----HHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHH-----HTTHHHHHHHHHHHHHHHHHHHHTSTTCE
T ss_pred -----HHHHHHHHhCCCCccCccceeecccccCCcCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 0222221110 0011233332222222 2346778888899999999999987 787
Q ss_pred eec------CCCccEEEEECCCC---ChHHHHHHHHHcCCeEecCCCCCCC----------CC-----------------
Q 045431 363 VYG------GKNAPYVWVQFPGR---SSWDVFSEILEKTHVVTTPGSGFGP----------GG----------------- 406 (433)
Q Consensus 363 ~~~------~~~g~~~~~~~~~~---~~~~~~~~l~~~~gi~v~~g~~f~~----------~~----------------- 406 (433)
+.. +.+++++|+.+++. +..++...|.+ +||.+.++..-.. ..
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (388)
T 1b9h_A 278 PQGGDVRADRNSHYMAMFRIPGLTEERRNALVDRLVE-AGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAIS 356 (388)
T ss_dssp ECCCCTTCCBCCCSEEEEECTTCCHHHHHHHHHHHHH-TTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHH
T ss_pred ccCCCcCCCccceEEEEEEeCCcCcccHHHHHHHHHH-CCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHH
Confidence 764 24578999999864 34556666655 5999987653100 00
Q ss_pred CCeEEEee--cc-ChhHHHHHHHHHHHhh
Q 045431 407 EGFIRVSA--FG-HRGNVLEACKRFKHLY 432 (433)
Q Consensus 407 ~~~iRi~~--~~-~~~~l~~~l~~l~~~l 432 (433)
.+.+||++ .. +++|++..++.|++++
T Consensus 357 ~~~l~l~~~~~~~t~edi~~~~~~l~~~~ 385 (388)
T 1b9h_A 357 SDCVWLHHRVLLAGEPELHATAEIIADAV 385 (388)
T ss_dssp HHEEEEEGGGGGSCHHHHHHHHHHHHHHH
T ss_pred hCeEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 13599996 45 7999999999998875
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-29 Score=246.76 Aligned_cols=323 Identities=14% Similarity=0.139 Sum_probs=212.2
Q ss_pred ceEEecCC-CCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHH
Q 045431 64 EVISLGIG-DTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRL 142 (433)
Q Consensus 64 ~~i~l~~g-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l 142 (433)
.+|+++.| +++++.|+.+.++......... ....+.|+ ..|.+ +++++++++.+.++.+ ++++++|+++++.++
T Consensus 90 ~~i~l~~g~~~~~~~~~~i~~a~~~~~~~~~-~~~~~~Y~-~~g~~-~~~~l~~~la~~~g~~--~~i~~~sGt~al~~~ 164 (464)
T 1ibj_A 90 LLVNLDNKFDPFDAMSTPLYQTATFKQPSAI-ENGPYDYT-RSGNP-TRDALESLLAKLDKAD--RAFCFTSGMAALSAV 164 (464)
T ss_dssp HHTCCCCSSCTTCCSSCCCCCCSBCCCSSSS-CCCSCSBT-TTCCH-HHHHHHHHHHHHHTCS--EEEEESSHHHHHHHH
T ss_pred eEEECCCCCCCCCCCCccHHhhhhhhhhccc-ccCCcccc-CCCCH-HHHHHHHHHHHHhCCC--eEEEECCHHHHHHHH
Confidence 46888887 7777777777666554311111 13345675 45666 7888888887644543 666677778898876
Q ss_pred HHhcCCCCEEEEeCCCChhhhhhH----HHhCCcccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCcc
Q 045431 143 QIVFGSNVTMAVQDPSYPAYVDSS----VIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPT 218 (433)
Q Consensus 143 ~~l~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPt 218 (433)
..++++||+|++++|+|+++...+ +..| .+++.++.++...+...+ .+++++|++++|+|||
T Consensus 165 l~~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G------------~~v~~v~~~d~~~l~~~i--~~~tk~v~l~~p~Npt 230 (464)
T 1ibj_A 165 THLIKNGEEIVAGDDVYGGSDRLLSQVVPRSG------------VVVKRVNTTKLDEVAAAI--GPQTKLVWLESPTNPR 230 (464)
T ss_dssp HTTSCTTCEEEEESSCCHHHHHHHHHTSGGGT------------CEEEEECTTSHHHHHHHC--CSSEEEEEECSSCTTT
T ss_pred HHHhCCCCEEEEECCCchhHHHHHHHHHHHcC------------CEEEEeCCCCHHHHHHHh--ccCceEEEEeCCCCCC
Confidence 568899999999999999987643 3445 367777764211111111 2578999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccc-ccceeeeeccc-ccc
Q 045431 219 GAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFT-GVRLGWTVIPK-ELL 296 (433)
Q Consensus 219 G~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~-G~r~G~l~~~~-~~~ 296 (433)
|.+++ +++|+++|++||+++|+||+|+.... ..++ .+ ++++++.|+||+++.+ |+|+||+++++ +++
T Consensus 231 G~v~~---l~~i~~la~~~gi~livDea~~~g~~---~~~~-~~----~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~ 299 (464)
T 1ibj_A 231 QQISD---IRKISEMAHAQGALVLVDNSIMSPVL---SRPL-EL----GADIVMHSATKFIAGHSDVMAGVLAVKGEKLA 299 (464)
T ss_dssp CCCCC---HHHHHHHHHTTTCEEEEECTTTCTTT---CCGG-GT----TCSEEEEETTTTTTCSSCCCCEEEEECSHHHH
T ss_pred CEeec---HHHHHHHHHHcCCEEEEECCCccccc---CChh-hc----CCEEEEECCcccccCCCCCcEEEEEEChHHHH
Confidence 99997 88999999999999999999985211 1122 12 3569999999988633 89999999986 453
Q ss_pred ccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhh--------------c-CC
Q 045431 297 FSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNS--------------L-GF 361 (433)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~--------------~-g~ 361 (433)
+.+...........+.+.|.++.+.++... ..+++. .++...+.+.+++ + ++
T Consensus 300 --------~~l~~~~~~~g~~~~~~~~~a~~~al~~~~-~r~~~~----~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~ 366 (464)
T 1ibj_A 300 --------KEVYFLQNSEGSGLAPFDCWLCLRGIKTMA-LRIEKQ----QENARKIAMYLSSHPRVKKVYYAGLPDHPGH 366 (464)
T ss_dssp --------HHHHHHHHHTTCBCCHHHHHHHHHHHTTHH-HHHHHH----HHHHHHHHHHHHTCTTCCEEECTTSTTSTTH
T ss_pred --------HHHHHHHHhcCCCCCHHHHHHHHhchhhHH-HHHHHH----HHHHHHHHHHHHhCCCceEEECCCCCCCcch
Confidence 556555443444567888888888876321 112222 2222233333332 2 34
Q ss_pred eeecCC---CccEEEEECCCCChH-HHHHHHHHcCCeEecCCC------------CCCC---------CCCCeEEEeecc
Q 045431 362 KVYGGK---NAPYVWVQFPGRSSW-DVFSEILEKTHVVTTPGS------------GFGP---------GGEGFIRVSAFG 416 (433)
Q Consensus 362 ~~~~~~---~g~~~~~~~~~~~~~-~~~~~l~~~~gi~v~~g~------------~f~~---------~~~~~iRi~~~~ 416 (433)
.+..+. .|.++|+.+++.... .+... ++..||.+.+|. .++. ..++++||++..
T Consensus 367 ~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~-L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~ 445 (464)
T 1ibj_A 367 HLHFSQAKGAGSVFSFITGSVALSKHLVET-TKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI 445 (464)
T ss_dssp HHHTTTCSCCCSEEEEECSCHHHHHHHHHH-CSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS
T ss_pred HHHhccCCCCceEEEEEECCHHHHHHHHHh-cCcceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC
Confidence 444332 356888988532222 23333 345699998886 1211 125789999866
Q ss_pred ChhHHHHHHHHHHHhh
Q 045431 417 HRGNVLEACKRFKHLY 432 (433)
Q Consensus 417 ~~~~l~~~l~~l~~~l 432 (433)
+++++++++|++++
T Consensus 446 --edi~~li~~L~~al 459 (464)
T 1ibj_A 446 --EDVDDLISDLDIAF 459 (464)
T ss_dssp --SCHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHH
Confidence 89999999998876
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-30 Score=244.17 Aligned_cols=325 Identities=13% Similarity=0.020 Sum_probs=214.1
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-H
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-L 142 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l 142 (433)
..+.++.+++++++++.+.+++.+.+ ....|++..+..+|++.+++++ +.+. .|++ +|+++++.+ +
T Consensus 14 ~~~~~~~~~~~~g~~p~v~~ai~~~~-------~~~~~~~~~~~~~l~~~la~~~----~~~~-~i~~-~~g~~a~~~a~ 80 (359)
T 3pj0_A 14 PYKLGGNGPRNVGVLTEALQNIDDNL-------ESDIYGNGAVIEDFETKIAKIL----GKQS-AVFF-PSGTMAQQIAL 80 (359)
T ss_dssp SEESSSSSCCBHHHHHHHTTTSCTTC-------BCCBTTBSHHHHHHHHHHHHHH----TCSE-EEEE-SCHHHHHHHHH
T ss_pred chhhcCCCccccCCCHHHHHHHHhhc-------ccCcccCCHHHHHHHHHHHHHh----CCCc-EEEe-CCHHHHHHHHH
Confidence 34666777766666788887777732 2235667778899999999997 5543 3555 666778776 6
Q ss_pred HHhcCCCCE--EEEeCCCChhhhhh---HHHhCCcccccccccccceEEEeecCccCCcccC-CCC-CCCccEEEEcCCC
Q 045431 143 QIVFGSNVT--MAVQDPSYPAYVDS---SVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST-VARTDIIFFCSPN 215 (433)
Q Consensus 143 ~~l~~~gd~--Vl~~~p~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~i~l~~p~ 215 (433)
..++.+||. |+++.+.|...... ....| .+++.++.+. ..++.+ +++ .+++++|++++||
T Consensus 81 ~~~~~~g~~~vvi~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~-~~~d~~~l~~~~~~~~~v~~~~p~ 147 (359)
T 3pj0_A 81 RIWADRKENRRVAYHPLSHLEIHEQDGLKELQQ------------ITPLLLGTAN-QLLTIDDIKSLREPVSSVLIELPQ 147 (359)
T ss_dssp HHHHHHHTCCEEEECTTCHHHHSSTTHHHHHHC------------CEEEECSCTT-SCCCHHHHHTCSSCCSEEEEESSB
T ss_pred HHHHhcCCCcEEEEeccceeeehhcchHHHhcC------------ceEEecCCcC-CCcCHHHHHhccCCceEEEEEecc
Confidence 777788886 55555555443322 13456 3677776632 222221 222 4678999999999
Q ss_pred Ccc-ccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecccc
Q 045431 216 NPT-GAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKE 294 (433)
Q Consensus 216 nPt-G~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~ 294 (433)
||| |.+++.+++++|+++|++||++||+|++|..+.......+...+....+ +++.||||+++.+ .. ||++++++
T Consensus 148 n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d--~~~~s~sK~~~~~-~g-g~~~~~~~ 223 (359)
T 3pj0_A 148 REIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFD--SVYVSFYKGIGGI-AG-AILAGNDD 223 (359)
T ss_dssp GGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTTCS--EEEEESSSTTCCS-SC-EEEEECHH
T ss_pred cCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhccCC--EEEEeccccCCCc-ce-EEEECCHH
Confidence 998 7999999999999999999999999999875432110111222211122 5566899998744 33 78888887
Q ss_pred ccccCCcchhHHHHHHHhhcc--CCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeee-cCCCcc
Q 045431 295 LLFSDGFPVAKDFNRIVCTCF--NGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVY-GGKNAP 370 (433)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~-~~~~g~ 370 (433)
++ +.+........ .......+.++...+++ +. +..+++.++++.+.+.|+++ |+.+. .+..++
T Consensus 224 l~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~----~~-~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~ 290 (359)
T 3pj0_A 224 FV--------QEAKIWKRRYGGDLISLYPYILSADYYFEK----RI-GKMAEYFEAAKGLAERFNSCSGVKTVPEVPVSN 290 (359)
T ss_dssp HH--------HHHHHHHHHTTCCCSCCHHHHHHHHHHHHH----HG-GGHHHHHHHHHHHHHHHHTSTTEEEESSSCSSS
T ss_pred HH--------HHHHHHHHHhCCCcchhHHHHHHHHHHHHH----HH-HHhHHHHHHHHHHHHHHhhCCCceeeccCCcce
Confidence 75 55554332221 11223333333344432 12 33345678888999999998 88885 567888
Q ss_pred EEEEECCCC---ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec-----cChhHHHHHHHHHHHhh
Q 045431 371 YVWVQFPGR---SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF-----GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 371 ~~~~~~~~~---~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~-----~~~~~l~~~l~~l~~~l 432 (433)
++|+.++.. +..++.+.+ .++||.+.||..|+..+.+++|+++. .+.+++++++++|.+.+
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~l-~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~l 359 (359)
T 3pj0_A 291 MFHVYFENSADEIGAILTKIQ-DETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKEL 359 (359)
T ss_dssp EEEEEESSCHHHHHHHHHHHH-HHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred EEEEEecCccchhHHHHHHHH-HhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhcC
Confidence 899988732 233444454 55699999998876656678999863 47899999999998864
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.5e-29 Score=242.01 Aligned_cols=339 Identities=7% Similarity=0.018 Sum_probs=225.6
Q ss_pred CCCCceEEecCCCC--CCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChH
Q 045431 60 YPDAEVISLGIGDT--TEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAK 136 (433)
Q Consensus 60 ~~~~~~i~l~~g~~--~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~ 136 (433)
.++...|||..|.+ .+. .++.+.+++.+++.+... ....| +.....++++.+++++ + .++|++++|++
T Consensus 73 ~~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~--~~~~~-~~~~~~~l~~~la~~~----g--~~~v~~~~sGs 143 (439)
T 2oat_A 73 VEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTL--TSRAF-YNNVLGEYEEYITKLF----N--YHKVLPMNTGV 143 (439)
T ss_dssp TTCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSC--CCTTS-EESSHHHHHHHHHHHH----T--CSEEEEESSHH
T ss_pred CCCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCc--ccCcc-CCHHHHHHHHHHHHhc----C--CCEEEEeCCHH
Confidence 34567899988754 354 789999999999875321 11123 3345678888888876 4 57999999999
Q ss_pred HHHHH-HHHhc---------CCC-CEEEEeCCCChhhhh-hHHHhCCcccccccccccceEEEeecCccCCcccCCCCCC
Q 045431 137 CDISR-LQIVF---------GSN-VTMAVQDPSYPAYVD-SSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA 204 (433)
Q Consensus 137 ~al~~-l~~l~---------~~g-d~Vl~~~p~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (433)
+++.+ +..+. .+| |.|++.+|+|++... .+...|.......++.....+..++.++...+...++ .+
T Consensus 144 eA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~d~~~le~~l~-~~ 222 (439)
T 2oat_A 144 EAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQ-DP 222 (439)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECSSCHHHHHHHTT-ST
T ss_pred HHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCCCCHHHHHHHhC-CC
Confidence 99987 44332 367 899999999987643 3333331100000111112455555532111111121 24
Q ss_pred CccEEEEcCC-CCcccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccc
Q 045431 205 RTDIIFFCSP-NNPTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFT 282 (433)
Q Consensus 205 ~~~~i~l~~p-~nPtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~ 282 (433)
++++|+ ++| +|++|. .++.+++++|.++|++||+++|+||+|.++...+....+......+| ++ ||||.++ +
T Consensus 223 ~~~~vi-~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~~~D-i~---t~sK~l~-~ 296 (439)
T 2oat_A 223 NVAAFM-VEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPD-IV---LLGKALS-G 296 (439)
T ss_dssp TEEEEE-ECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCS-EE---EECGGGG-T
T ss_pred CEEEEE-EECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhCCCCc-EE---Eeccccc-C
Confidence 566555 556 577896 56899999999999999999999999987765553322222221233 22 9999998 7
Q ss_pred c-cceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCC
Q 045431 283 G-VRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGF 361 (433)
Q Consensus 283 G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 361 (433)
| +|+||++++++++ +.+.......+.+.+++++.++.++++.... ++..++++++++++.+.|+++++
T Consensus 297 G~~~~G~v~~~~~~~--------~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~ 365 (439)
T 2oat_A 297 GLYPVSAVLCDDDIM--------LTIKPGEHGSTYGGNPLGCRVAIAALEVLEE---ENLAENADKLGIILRNELMKLPS 365 (439)
T ss_dssp TSSCCEEEEECHHHH--------TTSCTTSSCCSSTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHTTSCT
T ss_pred CCCCeEEEEECHHHH--------hccCCCCcccCCCcCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHhcC
Confidence 8 9999999998875 2222222334456788888888877763211 34567888889999999988754
Q ss_pred eee--cCCCccEEEEECCC---CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 362 KVY--GGKNAPYVWVQFPG---RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 362 ~~~--~~~~g~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
.+. .+..|.++|+.++. .+..++...+++ +||.+.|+ +.+++|+++ ..+++++++++++|++++
T Consensus 366 ~~~~~~~~~g~~~~v~l~~~~~~~~~~l~~~l~~-~Gv~v~~~------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l 436 (439)
T 2oat_A 366 DVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRD-NGLLAKPT------HGDIIRFAPPLVIKEDELRESIEIINKTI 436 (439)
T ss_dssp TTEEEEEEETTEEEEEECCCSSCCHHHHHHHHHH-TTEECCBS------SSSEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEeeeeEEEEEEecCccHHHHHHHHHHHH-CCeEEecC------CCCEEEEECccCCCHHHHHHHHHHHHHHH
Confidence 321 12367889999874 245677777765 59999874 257899975 569999999999999876
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-29 Score=244.41 Aligned_cols=339 Identities=11% Similarity=0.079 Sum_probs=213.0
Q ss_pred cCCCCceEEecCCCC--CCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCCh
Q 045431 59 KYPDAEVISLGIGDT--TEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGA 135 (433)
Q Consensus 59 ~~~~~~~i~l~~g~~--~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~ 135 (433)
..+++..+|+..+.. .+. .++.+.+++.+++.+. ....| +.....+|++.+++++ + ++++|++++|+
T Consensus 51 d~~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~----~~~~~-~~~~~~~l~~~la~~~----~-~~~~v~~~~sG 120 (434)
T 3l44_A 51 DVDGNKYIDYLAAYGPIITGHAHPHITKAITTAAENG----VLYGT-PTALEVKFAKMLKEAM----P-ALDKVRFVNSG 120 (434)
T ss_dssp ETTCCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHHC----SCCSS-CCHHHHHHHHHHHHHC----T-TCSEEEEESSH
T ss_pred ECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhC----cCCCC-CCHHHHHHHHHHHHhC----C-CCCEEEEeCch
Confidence 445678999987753 333 5899999999998752 12234 4556677777777775 4 67899999999
Q ss_pred HHHHHH-HHHhc--CCCCEEEEeCCCChhhhhhHHHhCCcccccc---ccccc-----ceEEEeecCccCCcccCCCCC-
Q 045431 136 KCDISR-LQIVF--GSNVTMAVQDPSYPAYVDSSVIMGQTGEFQK---DAEKY-----GKIEYMRCTAENGFFPDLSTV- 203 (433)
Q Consensus 136 ~~al~~-l~~l~--~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~~~~- 203 (433)
++++.+ +..+. .++++|++.+|+|+++.......+..++... ....+ ..+..++.++...+...+...
T Consensus 121 sea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 200 (434)
T 3l44_A 121 TEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWG 200 (434)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcccHHHHHHHHHhCC
Confidence 999997 44443 3779999999999887654443332211000 00000 123333332110110001111
Q ss_pred CCccEEEEcCC-CCccccCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccc
Q 045431 204 ARTDIIFFCSP-NNPTGAAA-TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGF 281 (433)
Q Consensus 204 ~~~~~i~l~~p-~nPtG~~~-~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~ 281 (433)
++++ +++++| +|++|.+. +.+++++|.++|++||+++|+||+|.+| ..+.......+...++ +.||||.++
T Consensus 201 ~~~~-~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~~~~~~~~~~~~d----i~t~sK~~~- 273 (434)
T 3l44_A 201 HEVA-AILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMYGGAQDLLGVTPD----LTALGKVIG- 273 (434)
T ss_dssp GGEE-EEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSSSCHHHHHTCCCS----EEEEEGGGG-
T ss_pred CCEE-EEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-eccccHHHHHcCCCCC----eeehhhhhc-
Confidence 2344 455566 55566555 8899999999999999999999999988 5443322222222223 458999998
Q ss_pred cccceeeeeccccccccCCcchhHHHHH---HHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhh
Q 045431 282 TGVRLGWTVIPKELLFSDGFPVAKDFNR---IVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNS 358 (433)
Q Consensus 282 ~G~r~G~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 358 (433)
+|+|+||++++++++ +.+.. .....+.+.++++++++.++++.... ++..++++++.+.+.+.|++
T Consensus 274 ~G~~iG~~~~~~~i~--------~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~ 342 (434)
T 3l44_A 274 GGLPIGAYGGKKEIM--------EQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQ---EGLYEKLDELGATLEKGILE 342 (434)
T ss_dssp TTSSCEEEEECHHHH--------TTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHH
T ss_pred CCcCeeeEEEcHHHH--------HhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHHHHH
Confidence 999999999998875 22222 12334566789999988888763211 23344444555555555443
Q ss_pred ----cCCeeecCCCccEEEEECCCCC--------------hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhH
Q 045431 359 ----LGFKVYGGKNAPYVWVQFPGRS--------------SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGN 420 (433)
Q Consensus 359 ----~g~~~~~~~~g~~~~~~~~~~~--------------~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~ 420 (433)
+++....+..|.++++.+.... ..++...+++ +||.+.|+. .+++|+++..++++
T Consensus 343 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~------~~~~rl~~~~t~e~ 415 (434)
T 3l44_A 343 QAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQ-EGVNLAPSK------YEAWFLTTEHTKED 415 (434)
T ss_dssp HHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHH-TTEECCSST------TCCEECCTTCCHHH
T ss_pred HHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHH-CCeEEeecC------CCcEEEecccCHHH
Confidence 4442222246778888774211 1345556555 599999864 25689988889999
Q ss_pred HHHHHHHHHHhh
Q 045431 421 VLEACKRFKHLY 432 (433)
Q Consensus 421 l~~~l~~l~~~l 432 (433)
+++++++|++++
T Consensus 416 i~~~l~~l~~~l 427 (434)
T 3l44_A 416 IEYTIEAVGRAF 427 (434)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999876
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-29 Score=244.00 Aligned_cols=338 Identities=8% Similarity=0.019 Sum_probs=211.9
Q ss_pred CCCCceEEecCCC--CCCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChH
Q 045431 60 YPDAEVISLGIGD--TTEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAK 136 (433)
Q Consensus 60 ~~~~~~i~l~~g~--~~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~ 136 (433)
.++...|||..|. .++. .++.+.+++.+++.+... ....| +.....+|++.+++++ + .++|++++|++
T Consensus 62 ~~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~--~~~~~-~~~~~~~l~~~la~~~----g--~~~v~~~~sGs 132 (433)
T 1z7d_A 62 VNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTI--CSRAF-FSVPLGICERYLTNLL----G--YDKVLMMNTGA 132 (433)
T ss_dssp TTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSC--CCTTS-EEHHHHHHHHHHHHHH----T--CSEEEEESSHH
T ss_pred CCCCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCCC--ccCCc-CCHHHHHHHHHHHhhc----C--CCeEEEeCCHH
Confidence 4566789998764 3555 789999999999875321 11123 2233456666666664 4 57999999999
Q ss_pred HHHHH-HHHhc---------CCC-CEEEEeCCCChhhhhh-HHHhCCcccccccccccceEEEeecCccCCcccCCCCCC
Q 045431 137 CDISR-LQIVF---------GSN-VTMAVQDPSYPAYVDS-SVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA 204 (433)
Q Consensus 137 ~al~~-l~~l~---------~~g-d~Vl~~~p~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (433)
+++.+ +..+. .+| |+|++.+|+|++.... ....|.......++.....+..++.++.+.+...++ .+
T Consensus 133 eA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~d~~~le~~l~-~~ 211 (433)
T 1z7d_A 133 EANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELK-DP 211 (433)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECTTCHHHHHHHHT-ST
T ss_pred HHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCCCCHHHHHHHhC-CC
Confidence 99987 43322 467 9999999999886543 333331100000111112345555432111111111 24
Q ss_pred CccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccc
Q 045431 205 RTDIIFFCSP-NNPTGAA-ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFT 282 (433)
Q Consensus 205 ~~~~i~l~~p-~nPtG~~-~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~ 282 (433)
++++|+ ++| +|+||.+ ++.+++++|.++|++||+++|+||+|.++...+....+......+| + .||||.++ +
T Consensus 212 ~~~~vi-~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~~~~d-i---~t~sK~l~-~ 285 (433)
T 1z7d_A 212 NVCAFI-VEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPD-V---ILLGKALS-G 285 (433)
T ss_dssp TEEEEE-ECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCS-E---EEECGGGG-T
T ss_pred CEEEEE-EECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhcCCCCC-E---EEECcccc-C
Confidence 566655 455 6778975 6888999999999999999999999987755543322222221223 2 28999998 8
Q ss_pred c-cceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc--
Q 045431 283 G-VRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-- 359 (433)
Q Consensus 283 G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-- 359 (433)
| +|+||++++++++ +.+.......+.+.++++++++.++++.... ++..++++++++++.+.|+++
T Consensus 286 G~~~~G~v~~~~~~~--------~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~ 354 (433)
T 1z7d_A 286 GHYPISAVLANDDIM--------LVIKPGEHGSTYGGNPLAASICVEALNVLIN---EKLCENAEKLGGPFLENLKRELK 354 (433)
T ss_dssp TSSCCEEEEECHHHH--------TTCCTTCCCCTTTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECHHHH--------hhhccccccccCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHH
Confidence 9 9999999998875 2222222334455788888888887763211 245667777888888887764
Q ss_pred CCe---eecCCCccEEEEECCCC--ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 360 GFK---VYGGKNAPYVWVQFPGR--SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 360 g~~---~~~~~~g~~~~~~~~~~--~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
++. ... ..|.++|+.++.. +..++...+++ +||.+.|+ +.+++|+++ ..+++++++++++|++++
T Consensus 355 ~~~~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~l~~-~Gv~v~~~------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l 426 (433)
T 1z7d_A 355 DSKIVRDVR-GKGLLCAIEFKNELVNVLDICLKLKE-NGLITRDV------HDKTIRLTPPLCITKEQLDECTEIIVKTV 426 (433)
T ss_dssp TCTTEEEEE-EETTEEEEEECTTTCCHHHHHHHHHH-TTEECCEE------TTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred hCCCeEEEE-eeeeEEEEEEccChhHHHHHHHHHHH-CCeEEecC------CCCEEEEECCcCCCHHHHHHHHHHHHHHH
Confidence 432 222 3678899998743 45667777765 59999885 257899975 569999999999998875
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-28 Score=239.44 Aligned_cols=324 Identities=12% Similarity=0.097 Sum_probs=214.4
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-H
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-L 142 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l 142 (433)
..+||..+....+.++.+.+++.. ....|.+..+..+||+++++++ +. +++++|+|+++++.+ +
T Consensus 43 ~ylD~~~~~~~~~~~~~~~~a~~~---------~~~~y~~~~~~~~l~~~la~~~----~~--~~~~~~~~gt~a~~~al 107 (456)
T 2ez2_A 43 IYIDLLTDSGTNAMSDKQWAGMMM---------GDEAYAGSENFYHLERTVQELF----GF--KHIVPTHQGRGAENLLS 107 (456)
T ss_dssp CSEECSCSSSCCCCCHHHHHHHTT---------CCCCSSSCHHHHHHHHHHHHHH----CC--SEEEEESSHHHHHHHHH
T ss_pred ceeeeccccCCccCCHHHHHHhhc---------chhhcccChhHHHHHHHHHHHh----CC--CcEEEeCCcHHHHHHHH
Confidence 356776655444556666665541 1235777788999999999998 43 489999999999987 6
Q ss_pred HHhcCCCCEEEEeCCCC-hhhhhhHHHhCCcccccccccccceEEEeecCcc----C----CcccCCCC-----CC----
Q 045431 143 QIVFGSNVTMAVQDPSY-PAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAE----N----GFFPDLST-----VA---- 204 (433)
Q Consensus 143 ~~l~~~gd~Vl~~~p~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~-----~~---- 204 (433)
..++++|| +++.|+| +.+...+...| .+++.++.+.+ . ++..+++. .+
T Consensus 108 ~~l~~~gd--i~~~~~~~~~~~~~~~~~G------------~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~ 173 (456)
T 2ez2_A 108 QLAIKPGQ--YVAGNMYFTTTRYHQEKNG------------AVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAE 173 (456)
T ss_dssp HHHCCTTC--EEEESSCCHHHHHHHHHTT------------CEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGG
T ss_pred HHhCCCCC--EeccccccchhHHHHHHcC------------CEEEEecccccccccccccccCCCCHHHHHHHHHhcccc
Confidence 77789999 7889999 77788888888 46777776532 1 12223221 12
Q ss_pred CccEEEEcCCCC-ccccCCCHHHHHHHHHHHHHcCCEEEEeccccc----------cccCCCCC-ccc-ccCCCCcceEE
Q 045431 205 RTDIIFFCSPNN-PTGAAATREQLTRLVQFAKDNGSIIVYDSAYAL----------YISDDNPR-SIF-EIPGAKEVAIE 271 (433)
Q Consensus 205 ~~~~i~l~~p~n-PtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~----------~~~~~~~~-~~~-~~~~~~~~vi~ 271 (433)
.+++|++++|+| |||.+++.+++++|+++|++||++||+||+|+. +.+.+.+. ++. .+....| +++
T Consensus 174 ~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d-~~~ 252 (456)
T 2ez2_A 174 NIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYAD-GCT 252 (456)
T ss_dssp GEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCS-EEE
T ss_pred ceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCC-EEE
Confidence 248888899998 999999999999999999999999999999985 33443221 110 1111233 454
Q ss_pred Eecccccccccccceeeeec-cccccccCCcchhHHHHHHHhhc-----cCCCcHHHHHH-HHHhcCcCChhHHHHHHHH
Q 045431 272 TSSFSKYAGFTGVRLGWTVI-PKELLFSDGFPVAKDFNRIVCTC-----FNGASNISQAG-GLACLSPEGFKAVHEVIGF 344 (433)
Q Consensus 272 i~S~sK~~~~~G~r~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~q~~-~~~~l~~~~~~~~~~~~~~ 344 (433)
+ |++|..+ +| +.||+++ +++++ +.+....... ..+.+.....+ +...++... +...++
T Consensus 253 ~-S~kk~~~-~~-~gG~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~----~~~~~~ 317 (456)
T 2ez2_A 253 M-SGKKDCL-VN-IGGFLCMNDDEMF--------SSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ----YEYIEH 317 (456)
T ss_dssp E-ETTTTTC-CS-SCEEEEESCHHHH--------HHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC----HHHHHH
T ss_pred E-eCcccCC-CC-ceeEEEECCHHHH--------HHHHHHHhhccCcccccCcchhHHHHHHHHHHHHhH----HHHHHH
Confidence 4 7889875 67 7899998 45553 4444333211 11223222222 333332111 234445
Q ss_pred HHHHHHHHHHHHhhcCCeeecCCCccEEEEEC----CCCChHHH-----HHHHHHcCCeEecC-CCCCC----------C
Q 045431 345 YKENTDIIVETFNSLGFKVYGGKNAPYVWVQF----PGRSSWDV-----FSEILEKTHVVTTP-GSGFG----------P 404 (433)
Q Consensus 345 ~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~----~~~~~~~~-----~~~l~~~~gi~v~~-g~~f~----------~ 404 (433)
.+++.+.+.+.|++.|+.+..|.+++++|+.+ ++.+..++ ...+++++||.+.+ |..|. .
T Consensus 318 ~~~~~~~l~~~L~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~ 397 (456)
T 2ez2_A 318 RVKQVRYLGDKLKAAGVPIVEPVGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHR 397 (456)
T ss_dssp HHHHHHHHHHHHHHTTCCBCSSCCSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCC
T ss_pred HHHHHHHHHHHHhcCCCccccCCCceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeecccccccccCcccccccc
Confidence 55666778888887788877777899999987 33334444 55554667998765 44331 1
Q ss_pred CCCCeEEEeec---cChhHHHHHHHHHHHhh
Q 045431 405 GGEGFIRVSAF---GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 405 ~~~~~iRi~~~---~~~~~l~~~l~~l~~~l 432 (433)
.+.+++||++. .+++++++++++|++++
T Consensus 398 ~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l 428 (456)
T 2ez2_A 398 PKLETVRLTIPRRVYTYAHMDVVADGIIKLY 428 (456)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 12478999975 68999999999998875
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-29 Score=247.88 Aligned_cols=341 Identities=12% Similarity=0.065 Sum_probs=217.4
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCC---CCCCCCC-CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQE---GYSGYGA-EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCD 138 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~Y~~-~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~a 138 (433)
++.|.|+.+... +.|+.+.+++.+.+..+.... ....|.+ ..-..++++.+++++ ++++++|++|+|++++
T Consensus 66 ~~~iyld~~~~g-~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g~~~~~v~~t~g~t~a 140 (465)
T 3e9k_A 66 ENAIYFLGNSLG-LQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIV----GANEKEIALMNALTVN 140 (465)
T ss_dssp CBCEECBTTTSC-CEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHH----TCCGGGEEECSCHHHH
T ss_pred CCeEEecCCccC-CChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHc----CCCcCCEEEECCHHHH
Confidence 467888877654 445556555555554332101 1111211 123456778888776 8889999999999999
Q ss_pred HHH-HHHhcCCCCE---EEEeCCCChhhhh----hHHHhCCcccccccccccceEEEeecCccCCcccC-CCC-----CC
Q 045431 139 ISR-LQIVFGSNVT---MAVQDPSYPAYVD----SSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST-----VA 204 (433)
Q Consensus 139 l~~-l~~l~~~gd~---Vl~~~p~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~ 204 (433)
+++ +.+++++|+. |++++|+|++... .++..|..... ..+...+.+.+..++.+ +++ .+
T Consensus 141 l~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~-------~~v~~~~~~~~~~~d~~~l~~~i~~~~~ 213 (465)
T 3e9k_A 141 LHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEE-------SMRMIKPREGEETLRIEDILEVIEKEGD 213 (465)
T ss_dssp HHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHH-------HEEEECCCTTCSSCCHHHHHHHHHHHGG
T ss_pred HHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCccee-------eeEEEecCCCCCccCHHHHHHHHHhcCC
Confidence 997 5777766654 9999999998554 44445632110 01233344332221111 221 15
Q ss_pred CccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccccc
Q 045431 205 RTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGV 284 (433)
Q Consensus 205 ~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~ 284 (433)
++++|++++||||||.+++ +++|.++|++||+++|+|++|+.... +..+... +..++++|++|+++.+..
T Consensus 214 ~~~lv~~~~~~n~tG~~~~---l~~i~~la~~~g~~vi~D~a~~~g~~---~~~~~~~----~~D~~~~s~~K~l~~gp~ 283 (465)
T 3e9k_A 214 SIAVILFSGVHFYTGQHFN---IPAITKAGQAKGCYVGFDLAHAVGNV---ELYLHDW----GVDFACWCSYKYLNAGAG 283 (465)
T ss_dssp GEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTTS---CCCHHHH----TCCEEEECSSSTTCCCTT
T ss_pred CeEEEEEeCcccCcceeec---HHHHHHHHHHcCCEEEEEhhhhcCCc---CCchhhc----CCCEEEECcccccccCCC
Confidence 7899999999999999998 78888999999999999999984211 2333332 234889999999932333
Q ss_pred ceeeeeccccccccCCcchhH-----HHHHHH------------hhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHH
Q 045431 285 RLGWTVIPKELLFSDGFPVAK-----DFNRIV------------CTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKE 347 (433)
Q Consensus 285 r~G~l~~~~~~~~~~~~~~~~-----~~~~~~------------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 347 (433)
++|+++++++++....+.... ....+. ......++.+...++.++++......++++++++++
T Consensus 284 ~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~ 363 (465)
T 3e9k_A 284 GIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVL 363 (465)
T ss_dssp CCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred ceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 689999988875321111000 000000 000113444545444444442111236889999999
Q ss_pred HHHHHHHHHhh-----------cCCeeecCC----CccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEE
Q 045431 348 NTDIIVETFNS-----------LGFKVYGGK----NAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRV 412 (433)
Q Consensus 348 ~~~~l~~~l~~-----------~g~~~~~~~----~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi 412 (433)
+++++.+.|++ .|+.+..|. .|.++|+.++ ....++...|.+ +||.+.. ..++++|+
T Consensus 364 ~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~-~~~~~l~~~L~~-~Gi~v~~------~~~~~iRi 435 (465)
T 3e9k_A 364 LTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFS-VPNKDVFQELEK-RGVVCDK------RNPNGIRV 435 (465)
T ss_dssp HHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEEC-CTTCCHHHHHHT-TTEECEE------ETTTEEEE
T ss_pred HHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEec-CCHHHHHHHHHH-CCEEEec------CCCCEEEE
Confidence 99999999987 578887664 3778888887 344566667655 4999863 23579999
Q ss_pred ee---ccChhHHHHHHHHHHHhhC
Q 045431 413 SA---FGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 413 ~~---~~~~~~l~~~l~~l~~~l~ 433 (433)
++ +++.++++++++.|+++++
T Consensus 436 s~~~~~~t~edi~~~~~~l~~~l~ 459 (465)
T 3e9k_A 436 APVPLYNSFHDVYKFTNLLTSILD 459 (465)
T ss_dssp BCCTTTCCHHHHHHHHHHHHHHHT
T ss_pred eCcccCCCHHHHHHHHHHHHHHHH
Confidence 85 4589999999999998864
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.8e-29 Score=237.11 Aligned_cols=322 Identities=13% Similarity=0.117 Sum_probs=208.7
Q ss_pred eEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCC---CCC----CHHHHHHHHHHHhccCCCC-CCcEEEcCCh-
Q 045431 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA---EQG----EKPLRAAIASTFYKDLGIE-EGDIFVSDGA- 135 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~---~~g----~~~lr~~la~~l~~~~~~~-~~~i~~~~G~- 135 (433)
+++++.|.+ ++|+.+.+++.+.+....+ .+...|+. ..+ ..++++.+++++ +++ +++|++|+|+
T Consensus 4 ~~~~~~g~~--~~p~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g~~~~~~v~~~~g~g 76 (360)
T 1w23_A 4 VFNFNAGPS--ALPKPALERAQKELLNFND-TQMSVMELSHRSQSYEEVHEQAQNLLRELL----QIPNDYQILFLQGGA 76 (360)
T ss_dssp CEECCSSSC--CCCHHHHHHHHHTSSSSTT-SSSCGGGSCTTSHHHHHHHHHHHHHHHHHH----TCCTTEEEEEESSHH
T ss_pred eEeecCCCc--CCCHHHHHHHHHHhhhhcc-ccccccccCCCCHHHHHHHHHHHHHHHHHh----CCCCCceEEEECCcc
Confidence 577777754 7889999999998754211 11112211 223 345555555555 664 5799999999
Q ss_pred HHHHHH-HHHhcCC---CCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCC-cc-cCCCC---CCCc
Q 045431 136 KCDISR-LQIVFGS---NVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENG-FF-PDLST---VART 206 (433)
Q Consensus 136 ~~al~~-l~~l~~~---gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~---~~~~ 206 (433)
++++.+ +..++.+ ||.|+++.++|... ..++..| +++.++.+++++ .+ .++++ .+++
T Consensus 77 t~al~~~~~~l~~~~~~g~~vi~~~~~~~~~-~~~~~~g-------------~~~~v~~~~~~~~~d~~~l~~~~i~~~~ 142 (360)
T 1w23_A 77 SLQFTMLPMNLLTKGTIGNYVLTGSWSEKAL-KEAKLLG-------------ETHIAASTKANSYQSIPDFSEFQLNEND 142 (360)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEECSHHHHHHH-HHHHTTS-------------EEEEEEECGGGTSCSCCCGGGCCCCTTE
T ss_pred hHHHHHHHHHhcCCCCcccEEEecchhHHHH-HHHHHhC-------------CeEEeecccccCcCCccchHhhccCCCC
Confidence 999997 5777755 56777777666543 2334445 345566553222 11 22322 3578
Q ss_pred cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccce
Q 045431 207 DIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRL 286 (433)
Q Consensus 207 ~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~ 286 (433)
++|++++|+||||.+++ ++. ++||++||+|++|+.+.. +.++..+ + ++++|+||++|++| +
T Consensus 143 k~v~~~~~~nptG~~~~--~i~------~~~~~~li~D~a~~~~~~---~~~~~~~----d--i~~~s~sK~~~~~G--~ 203 (360)
T 1w23_A 143 AYLHITSNNTIYGTQYQ--NFP------EINHAPLIADMSSDILSR---PLKVNQF----G--MIYAGAQKNLGPSG--V 203 (360)
T ss_dssp EEEEEESEETTTTEECS--SCC------CCCSSCEEEECTTTTTSS---CCCGGGC----S--EEEEETTTTTSCTT--C
T ss_pred CEEEEeCCCCCcceecc--ccc------ccCCceEEEechhhcCCC---CcCcccC----C--EEEEEcccccCCCC--c
Confidence 99999999999999987 222 279999999999986432 2233222 2 78999999998666 8
Q ss_pred eeeeccccccccCCcchhH---HHHHH--HhhccCCCcHHHHHHHHHhcCcCChh-HHHHHHHHHHHHHHHHHHHHhhcC
Q 045431 287 GWTVIPKELLFSDGFPVAK---DFNRI--VCTCFNGASNISQAGGLACLSPEGFK-AVHEVIGFYKENTDIIVETFNSLG 360 (433)
Q Consensus 287 G~l~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~g 360 (433)
||++++++++.+ ...... .+... ......+++...+.++.++++..... ++++++++++++++++.+.|++++
T Consensus 204 G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 282 (360)
T 1w23_A 204 TVVIVKKDLLNT-KVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESN 282 (360)
T ss_dssp EEEEEEHHHHCS-CCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEEEEcHHHHhh-cccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999887532 111100 00000 11222345566666555555421112 568889999999999999999875
Q ss_pred -C-eee-cC--CCccEEEEECCCC-ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec--cChhHHHHHHHHHHHhh
Q 045431 361 -F-KVY-GG--KNAPYVWVQFPGR-SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF--GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 361 -~-~~~-~~--~~g~~~~~~~~~~-~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~l~~~l~~l~~~l 432 (433)
+ ... .+ .+++++|+.+++. +..++...+ .++||.+.||..+ ++++||++. .+++++++++++|++++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~~~~~~----~~~iRis~~~~~~~~~i~~~~~~l~~~~ 357 (360)
T 1w23_A 283 GFYVGHAEKGSRSLMNVTFNLRNEELNQQFLAKA-KEQGFVGLNGHRS----VGGCRASIYNAVPIDACIALRELMIQFK 357 (360)
T ss_dssp TSSEESSCGGGBCSSEEEEECSSHHHHHHHHHHH-HHTTEESCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CcccccCCchhccCcEEEEEcCCCccHHHHHHHH-HHCCeeeecCCCC----CCeEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 5 543 12 2456999999742 234555554 4569999998753 478999975 58999999999999875
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-28 Score=237.12 Aligned_cols=334 Identities=13% Similarity=0.094 Sum_probs=208.5
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCC----CCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAE----QGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDI 139 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~----~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al 139 (433)
+.+.|+.+.+. ++|+.+.+++.+.+..... .....|... ....++|+++++++ ++++++|++|+|+++++
T Consensus 18 ~~~~Ld~~~~~-~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~la~~~----g~~~~~v~~~~g~t~a~ 91 (432)
T 3a9z_A 18 RKVYMDYNATT-PLEPEVIQAVTEAMKEAWG-NPSSSYVAGRKAKDIINTARASLAKMI----GGKPQDIIFTSGGTESN 91 (432)
T ss_dssp CCEECBTTTCC-CCCHHHHHHHHHHHHHCCS-CTTCSSHHHHHHHHHHHHHHHHHHHHH----TCCGGGEEEESCHHHHH
T ss_pred CcEEeeCCccC-CCCHHHHHHHHHHHHHhcC-CCccCcHHHHHHHHHHHHHHHHHHHHc----CCCcCeEEEeCChHHHH
Confidence 57889888876 7789999999998864210 011122110 12368999999987 78888999999999999
Q ss_pred HH-HHHhc--------CCCCEEEEeCCCChhhh-----------------hhHHHhCCcccccccccccceEEEeecCc-
Q 045431 140 SR-LQIVF--------GSNVTMAVQDPSYPAYV-----------------DSSVIMGQTGEFQKDAEKYGKIEYMRCTA- 192 (433)
Q Consensus 140 ~~-l~~l~--------~~gd~Vl~~~p~~~~~~-----------------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~- 192 (433)
.+ +..++ ++||+|++++|+|+.+. ...+..| .+++.++.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g------------~~v~~v~~~~~ 159 (432)
T 3a9z_A 92 NLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQV------------AEVTFVPVSKV 159 (432)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTS------------CEEEEECCCTT
T ss_pred HHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcC------------cEEEEEecCcc
Confidence 97 45554 58999999999998752 1122234 4788888764
Q ss_pred cCCcccC-CCC--CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcC----------CEEEEeccccccccCCCCCcc
Q 045431 193 ENGFFPD-LST--VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNG----------SIIVYDSAYALYISDDNPRSI 259 (433)
Q Consensus 193 ~~~~~~~-~~~--~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~----------~~li~De~~~~~~~~~~~~~~ 259 (433)
++.++.+ +++ .+++++|++++|+||||.+++ +++|.++|++++ ++||+|++|+... .+.++
T Consensus 160 ~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~---~~~~~ 233 (432)
T 3a9z_A 160 NGQVEVEDILAAVRPTTCLVTIMLANNETGVIMP---ISEISRRIKALNQIRAASGLPRVLVHTDAAQALGK---RRVDV 233 (432)
T ss_dssp TSSCCHHHHHHTCCTTEEEEECCSBCTTTCBBCC---HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTT---SCCCH
T ss_pred cCCcCHHHHHHhccCCceEEEEECcccCcccccC---HHHHHHHHHhcCcccccccCCceEEEEEchhhhCC---cccCh
Confidence 2212211 221 257899999999999999999 567888899999 9999999997532 13333
Q ss_pred cccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHH
Q 045431 260 FEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVH 339 (433)
Q Consensus 260 ~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~ 339 (433)
.... .+ +++.|+||++| +|+||++++++......................+.+.+.+.++.++++.. .++++
T Consensus 234 ~~~~--~d--~~~~s~~K~~g---~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~-~~~~~ 305 (432)
T 3a9z_A 234 EDLG--VD--FLTIVGHKFYG---PRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLV-SENCE 305 (432)
T ss_dssp HHHC--CS--EEEEEGGGTTC---CSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHH-HHHHH
T ss_pred hhcC--CC--EEEEehhHhcC---CcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHH-HhhHH
Confidence 3332 22 66899999874 46999999987621111100000000011122345677776666666521 23578
Q ss_pred HHHHHHHHHHHHHHHHHhhc-CCeee--cC-----CCccEEEEECCC--CChHHHHHHHHHcCCeEecCCCCCCCC----
Q 045431 340 EVIGFYKENTDIIVETFNSL-GFKVY--GG-----KNAPYVWVQFPG--RSSWDVFSEILEKTHVVTTPGSGFGPG---- 405 (433)
Q Consensus 340 ~~~~~~~~~~~~l~~~l~~~-g~~~~--~~-----~~g~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~f~~~---- 405 (433)
+++++++++++++.+.|+++ |+.+. .+ ..+..+++.+++ .+..++...+ .++.+.+|..|.+.
T Consensus 306 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~i~~~~G~~~~~~~~~~ 382 (432)
T 3a9z_A 306 TYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQLRGYMVLAQC---QTLLASVGASCHSDHEDR 382 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTTCCHHHHHHHC---SSEECBSSCGGGGGGTTS
T ss_pred HHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCCCcHHHHHHHh---cCeEEeccccccCCCCCC
Confidence 88999999999999999885 65442 32 123456666663 2344444432 37888777655321
Q ss_pred --------------CCCeEEEeecc--ChhHHHHHHHHHHHhh
Q 045431 406 --------------GEGFIRVSAFG--HRGNVLEACKRFKHLY 432 (433)
Q Consensus 406 --------------~~~~iRi~~~~--~~~~l~~~l~~l~~~l 432 (433)
..+++||++.. +++++++++++|++++
T Consensus 383 ~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~ 425 (432)
T 3a9z_A 383 PSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAV 425 (432)
T ss_dssp CCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred ccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 13789999754 8999999999998875
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-26 Score=226.36 Aligned_cols=311 Identities=16% Similarity=0.155 Sum_probs=218.2
Q ss_pred EecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCC-CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHHHHh
Q 045431 67 SLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA-EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQIV 145 (433)
Q Consensus 67 ~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~-~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l~~l 145 (433)
+|+.++|+++.|+.+.+++.+.+.. . .|++ ..+..+||+++++++ +. ++|++|+|+++++.++...
T Consensus 20 ~l~~~~p~~~~p~~~~~a~~~~~~~----~---~y~~~~~~~~~l~~~la~~~----~~--~~v~~~~ggt~al~~~l~~ 86 (424)
T 2po3_A 20 PLLVGRPNRIDRARLYERLDRALDS----Q---WLSNGGPLVREFEERVAGLA----GV--RHAVATCNATAGLQLLAHA 86 (424)
T ss_dssp CEETTCCCCCCHHHHHHHHHHHHHH----T---CCSSSCHHHHHHHHHHHHHH----TS--SEEEEESCHHHHHHHHHHH
T ss_pred cccccCCCCCChHHHHHHHHHHHhc----C---CcccCCHHHHHHHHHHHHHh----CC--CeEEEeCCHHHHHHHHHHH
Confidence 6899999999999999999888863 1 3665 678999999999998 43 5899999999999985444
Q ss_pred cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC---CCC--CCCccEEEEcCCCCcccc
Q 045431 146 FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD---LST--VARTDIIFFCSPNNPTGA 220 (433)
Q Consensus 146 ~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~i~l~~p~nPtG~ 220 (433)
+.+||+|++++|+|+++...+...| .+++.++.+++ ++..+ +++ .+++++|+++ ||||.
T Consensus 87 l~~gd~Vlv~~~~~~~~~~~~~~~G------------~~~~~v~~~~~-~~~~d~~~l~~~i~~~~~~v~~~---~~tG~ 150 (424)
T 2po3_A 87 AGLTGEVIMPSMTFAATPHALRWIG------------LTPVFADIDPD-TGNLDPDQVAAAVTPRTSAVVGV---HLWGR 150 (424)
T ss_dssp HTCCSEEEEESSSCTHHHHHHHHTT------------CEEEEECBCTT-TSSBCHHHHGGGCCTTEEEEEEE---CGGGC
T ss_pred cCCCCEEEECCCccHHHHHHHHHcC------------CEEEEEecCCC-cCCcCHHHHHHhhCcCCcEEEEE---CCCCC
Confidence 4589999999999999999888888 47888887652 22223 222 2478888875 48998
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEecccc-ccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecc-cccccc
Q 045431 221 AATREQLTRLVQFAKDNGSIIVYDSAYA-LYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIP-KELLFS 298 (433)
Q Consensus 221 ~~~~~~~~~i~~~a~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~-~~~~~~ 298 (433)
..+ +++|.++|++||++||+|++|+ ++.+++. ++..+ .+ +++.||||..+++|+|+||++++ ++++
T Consensus 151 ~~~---l~~i~~la~~~~~~li~Dea~~~g~~~~~~--~~~~~---~d--i~~~S~sk~K~l~~~~~G~~v~~~~~l~-- 218 (424)
T 2po3_A 151 PCA---ADQLRKVADEHGLRLYFDAAHALGCAVDGR--PAGSL---GD--AEVFSFHATKAVNAFEGGAVVTDDADLA-- 218 (424)
T ss_dssp CCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTE--ETTSS---SS--EEEEECCTTSSSCCSSCEEEEESCHHHH--
T ss_pred cCC---HHHHHHHHHHcCCEEEEECccccCCeECCe--ecccc---cC--EEEEeCCCCCCccCCCCeEEEeCCHHHH--
Confidence 755 8899999999999999999999 4555432 22222 23 88999995555667899999998 5653
Q ss_pred CCcchhHHHHHHHhhccC------------CCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeec
Q 045431 299 DGFPVAKDFNRIVCTCFN------------GASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYG 365 (433)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~------------~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~ 365 (433)
+.+......... ..+.+...++... .+++++..++.+++++++.+.|+++ |+.+..
T Consensus 219 ------~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~-----~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~ 287 (424)
T 2po3_A 219 ------ARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTS-----LDAFPEVIDRNRRNHAAYREHLADLPGVLVAD 287 (424)
T ss_dssp ------HHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHTCSCTTEEECC
T ss_pred ------HHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhccCCCccccC
Confidence 445443322110 1122222222211 2345677777888888888999887 787765
Q ss_pred -CCCc----cEEEEECC----CCChHHHHHHHHHcCCeEecCCCCCCCC--------------C-------CCeEEEe--
Q 045431 366 -GKNA----PYVWVQFP----GRSSWDVFSEILEKTHVVTTPGSGFGPG--------------G-------EGFIRVS-- 413 (433)
Q Consensus 366 -~~~g----~~~~~~~~----~~~~~~~~~~l~~~~gi~v~~g~~f~~~--------------~-------~~~iRi~-- 413 (433)
+.++ .++++.++ +.+..++...+ .++||.+.+. |.+. . ...+|++
T Consensus 288 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~L-~~~gI~v~~~--~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~ 364 (424)
T 2po3_A 288 HDRHGLNNHQYVIVEIDEATTGIHRDLVMEVL-KAEGVHTRAY--FSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTG 364 (424)
T ss_dssp GGGGSCCCCCCEEEEECHHHHSSCHHHHHHHH-HHTTEECBCT--TCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCS
T ss_pred CCCCCccccEEEEEEECCccchhhHHHHHHHH-HHCCCceecc--cCCccccchhhhhcCCCCChhHHHHhcCEEEeeCC
Confidence 3332 23447776 34556666655 5569999872 2210 0 1127787
Q ss_pred eccChhHHHHHHHHHHHhh
Q 045431 414 AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 414 ~~~~~~~l~~~l~~l~~~l 432 (433)
...+++++++++++|++++
T Consensus 365 ~~~t~e~i~~~~~~L~~~~ 383 (424)
T 2po3_A 365 TAIGDDDIRRVADLLRLCA 383 (424)
T ss_dssp TTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 3558999999999998865
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=240.79 Aligned_cols=344 Identities=11% Similarity=0.012 Sum_probs=206.3
Q ss_pred CCCCceEEecCCCC--CC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChH
Q 045431 60 YPDAEVISLGIGDT--TE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAK 136 (433)
Q Consensus 60 ~~~~~~i~l~~g~~--~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~ 136 (433)
.+++..||+..+.. .+ ..++.+.+++.+++.+. ..|....+..+.+.++++++.+..+.+.++|++|+|++
T Consensus 41 ~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~------~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGs 114 (448)
T 3dod_A 41 INGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKI------AHSTLLGMTNVPATQLAETLIDISPKKLTRVFYSDSGA 114 (448)
T ss_dssp TTSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTC------SCCCCSSSEEHHHHHHHHHHHHHSCTTEEEEEEESSHH
T ss_pred CCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhc------cCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchH
Confidence 45677899987632 22 35899999999998642 12223445567778888887765566678999999999
Q ss_pred HHHHH-HHHhcC----CC----CEEEEeCCCChhhhhhHHHhCCccccc-ccccccceEEEeecCccCCc----------
Q 045431 137 CDISR-LQIVFG----SN----VTMAVQDPSYPAYVDSSVIMGQTGEFQ-KDAEKYGKIEYMRCTAENGF---------- 196 (433)
Q Consensus 137 ~al~~-l~~l~~----~g----d~Vl~~~p~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~---------- 196 (433)
+++.+ +..+.. +| |+|++.+|+|+++......++....+. .+.........++....-..
T Consensus 115 eA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (448)
T 3dod_A 115 EAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRD 194 (448)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECCCCCTTSSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCccccCCccchhhhhH
Confidence 99997 444443 44 999999999988765544443221110 01111112333433211000
Q ss_pred --ccCCCC-----CCCccEEEEcCCC-Cccc-cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCc
Q 045431 197 --FPDLST-----VARTDIIFFCSPN-NPTG-AAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKE 267 (433)
Q Consensus 197 --~~~~~~-----~~~~~~i~l~~p~-nPtG-~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 267 (433)
..++++ ..++++|++..++ |++| .+++.+++++|.++|++||++||+||+|.++...+...........++
T Consensus 195 ~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~d 274 (448)
T 3dod_A 195 QCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPD 274 (448)
T ss_dssp HHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCS
T ss_pred HHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccchhhhhhcCCCCC
Confidence 111221 1244554444445 7887 556888899999999999999999999998766554332222222222
Q ss_pred ceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHH-------HHhhccCCCcHHHHHHHHHhcCcCCh-hHH
Q 045431 268 VAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNR-------IVCTCFNGASNISQAGGLACLSPEGF-KAV 338 (433)
Q Consensus 268 ~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~ 338 (433)
+.||||.++ +| +|+||++++++++ +.+.. .....+.+.++++++++.++|+.... ..+
T Consensus 275 ----i~t~sK~l~-~G~~~ig~v~~~~~~~--------~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 341 (448)
T 3dod_A 275 ----LMAAGKGIT-GGYLPIAVTFATEDIY--------KAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESENIV 341 (448)
T ss_dssp ----EEEECGGGG-TTSSCCEEEEEEHHHH--------HTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHHTTHH
T ss_pred ----EEEeccccc-CCcCceEEEEECHHHH--------HHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHhcccHH
Confidence 347899997 79 5999999998875 33332 23344566789999999988863211 223
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC-CeeecCCCccEEEEECCCCC------------hHHHHHHHHHcCCeEecCCCCCCCC
Q 045431 339 HEVIGFYKENTDIIVETFNSLG-FKVYGGKNAPYVWVQFPGRS------------SWDVFSEILEKTHVVTTPGSGFGPG 405 (433)
Q Consensus 339 ~~~~~~~~~~~~~l~~~l~~~g-~~~~~~~~g~~~~~~~~~~~------------~~~~~~~l~~~~gi~v~~g~~f~~~ 405 (433)
++.++..+..++.+.+ +.+++ +.... ..|.++|+.++... ..++...++++ ||.+.|+
T Consensus 342 ~~~~~~~~~~~~~l~~-l~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~------ 412 (448)
T 3dod_A 342 EQVAEKSKKLHFLLQD-LHALPHVGDIR-QLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMREL-GMLTRPL------ 412 (448)
T ss_dssp HHHHHHHHHHHHHHHH-HTTSTTEEEEE-EETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHT-TEECCEE------
T ss_pred HHHHHHHHHHHHHHHH-HhcCCCeEEEE-eeeEEEEEEEccCcccccccchhhHHHHHHHHHHHHC-CcEEecc------
Confidence 3333333333444444 44443 22232 35778899886321 25666676655 9999886
Q ss_pred CCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 406 GEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 406 ~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
.+++||+ +..+++++++++++|++++
T Consensus 413 -~~~iRi~~~~~~t~e~i~~~l~~l~~~l 440 (448)
T 3dod_A 413 -GDVIAFLPPLASTAEELSEMVAIMKQAI 440 (448)
T ss_dssp -TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred -CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 2689996 5679999999999999875
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-28 Score=238.04 Aligned_cols=337 Identities=11% Similarity=0.083 Sum_probs=218.6
Q ss_pred cCCCCceEEecCCCC--CCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCCh
Q 045431 59 KYPDAEVISLGIGDT--TEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGA 135 (433)
Q Consensus 59 ~~~~~~~i~l~~g~~--~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~ 135 (433)
..+++..+|++.+.. .+. .++.+.+++.+++.+.. ...| +.....+|++.+++++ + .+++|++++|+
T Consensus 49 d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~----~~~~-~~~~~~~l~~~la~~~----~-~~~~v~~~~~G 118 (429)
T 3k28_A 49 DIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGT----SFGA-PTEIENKLAKLVIERV----P-SIEIVRMVNSG 118 (429)
T ss_dssp ETTCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCS----CCSS-CCHHHHHHHHHHHHHS----T-TCSEEEEESSH
T ss_pred ECCCCEEEECCCChhhcccCCCCHHHHHHHHHHHhhCc----CcCC-CCHHHHHHHHHHHHhC----C-CCCEEEEeCCh
Confidence 345678999988763 333 58999999999987532 1233 5567778888888875 4 67899999999
Q ss_pred HHHHHH-HHHhc--CCCCEEEEeCCCChhhhhhHHHhCCccccc---cccccc-----ceEEEeecCccCCcccCCCCC-
Q 045431 136 KCDISR-LQIVF--GSNVTMAVQDPSYPAYVDSSVIMGQTGEFQ---KDAEKY-----GKIEYMRCTAENGFFPDLSTV- 203 (433)
Q Consensus 136 ~~al~~-l~~l~--~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~---~~~~~~-----~~~~~~~~~~~~~~~~~~~~~- 203 (433)
++++.. +..+. .+++.|++.+|+|+++.......+..++.. +....+ ..+..++.++...+...+...
T Consensus 119 sea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 198 (429)
T 3k28_A 119 TEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFG 198 (429)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCC
Confidence 999997 44333 367899999999987654433222211100 000000 123333332111110001111
Q ss_pred CCccEEEEcCC-CCccccCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccc
Q 045431 204 ARTDIIFFCSP-NNPTGAAA-TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGF 281 (433)
Q Consensus 204 ~~~~~i~l~~p-~nPtG~~~-~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~ 281 (433)
+++++ ++++| +|++|.+. +.+++++|.++|++||+++|+||+|.++ ..+.......+...++ +.||||.++
T Consensus 199 ~~~~~-vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~~~d----i~t~sK~~~- 271 (429)
T 3k28_A 199 DDIAC-VIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAYNCGQGYYGVTPD----LTCLGKVIG- 271 (429)
T ss_dssp GGEEE-EEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSSTTHHHHHHTCCCS----EEEECGGGG-
T ss_pred CCEEE-EEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcchHHHHhCCCCc----eehhhhhhc-
Confidence 23444 55566 45556554 6888999999999999999999999988 5543222222222222 347999998
Q ss_pred cccceeeeeccccccccCCcchhHHHHH---HHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhh
Q 045431 282 TGVRLGWTVIPKELLFSDGFPVAKDFNR---IVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNS 358 (433)
Q Consensus 282 ~G~r~G~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 358 (433)
+|+|+||++++++++ +.+.. .....+.+.++++++++.++++... +++.++++++++++.+.|++
T Consensus 272 ~G~~iG~~~~~~~~~--------~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~----~~~~~~~~~~~~~l~~~L~~ 339 (429)
T 3k28_A 272 GGLPVGAYGGKAEIM--------RQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT----PESYVEFERKAEMLEAGLRK 339 (429)
T ss_dssp TTSCCEEEEECHHHH--------TTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC----HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEcHHHH--------hhhccCCCccccCCCCCChHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 799999999998875 22221 1133455678999999999887543 56667777777777777765
Q ss_pred c----CC-eeecCCCccEEEEECCCCC--------------hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChh
Q 045431 359 L----GF-KVYGGKNAPYVWVQFPGRS--------------SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRG 419 (433)
Q Consensus 359 ~----g~-~~~~~~~g~~~~~~~~~~~--------------~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~ 419 (433)
. +. .... ..|.++++.+.... ..++...+++ +||.+.|+. .+++|+++..+++
T Consensus 340 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~------~~~~r~~~~~t~e 411 (429)
T 3k28_A 340 AAEKHGIPHHIN-RAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVE-QGVFLPPSQ------FEGLFLSTVHSDA 411 (429)
T ss_dssp HHHHTTCCCEEE-EETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHH-TTEECCSST------TSCBCCCTTCCHH
T ss_pred HHhhCCCCEEEE-eeccEEEEEEecCCcccccccccccHHHHHHHHHHHHH-CCeEEecCC------CCCEEEECCCCHH
Confidence 3 32 2233 35778888774211 2455566655 599998863 3568999888999
Q ss_pred HHHHHHHHHHHhh
Q 045431 420 NVLEACKRFKHLY 432 (433)
Q Consensus 420 ~l~~~l~~l~~~l 432 (433)
++++++++|++++
T Consensus 412 ~i~~~l~~l~~~l 424 (429)
T 3k28_A 412 DIEATIAAAEIAM 424 (429)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999876
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=241.04 Aligned_cols=337 Identities=12% Similarity=0.077 Sum_probs=204.7
Q ss_pred CCCCceEEecCCCCC--C-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChH
Q 045431 60 YPDAEVISLGIGDTT--E-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAK 136 (433)
Q Consensus 60 ~~~~~~i~l~~g~~~--~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~ 136 (433)
.++...|||+.+.+. + ..++.+.+++.+.+... . .| .+..++++++++++.+..+ ++++|++++|++
T Consensus 54 ~~g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~----~--~~---~~~~~~~~~la~~l~~~~~-~~~~v~~~~gg~ 123 (453)
T 2cy8_A 54 VDGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSHG----V--QY---AASHPLEVRWAERIVAAFP-SIRKLRFTGSGT 123 (453)
T ss_dssp TTCCEEEESCTTTTSCTTCBTCHHHHHHHHHHHTTT----C--SS---CSSCHHHHHHHHHHHHHCT-TCSEEEEESCHH
T ss_pred CCCCEEEECcccHhhcccCCCCHHHHHHHHHHHHhC----C--CC---CCCCHHHHHHHHHHHhhCC-CCCEEEEeCCHH
Confidence 345678999888532 2 36899999999988641 1 22 2457899999999987555 678999999999
Q ss_pred HHHHHH-HH--hcCCCCEEEEeCCCChhhhhhHHH-hCC-------cccccccccccceEEEeecCccCCcccCCCCC-C
Q 045431 137 CDISRL-QI--VFGSNVTMAVQDPSYPAYVDSSVI-MGQ-------TGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV-A 204 (433)
Q Consensus 137 ~al~~l-~~--l~~~gd~Vl~~~p~~~~~~~~~~~-~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 204 (433)
+++.++ .. .+.+++.|++.+|+|+++...... .|. .++.... ...+..++.++...+...+... +
T Consensus 124 eA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~d~~~le~~l~~~~~ 200 (453)
T 2cy8_A 124 ETTLLALRVARAFTGRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPET---TANTLLIRPDDIEGMREVFANHGS 200 (453)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEECC----------------------------C---GGGEEEECTTCHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhhCCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccc---cCceeecCCCCHHHHHHHHHhcCC
Confidence 999974 43 133456888888999876553322 111 0110000 0123334432110110001111 2
Q ss_pred CccEEEEcCC-CCccccCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccc
Q 045431 205 RTDIIFFCSP-NNPTGAAA-TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFT 282 (433)
Q Consensus 205 ~~~~i~l~~p-~nPtG~~~-~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~ 282 (433)
++++ ++++| +||||.++ +.+++++|.++|++||++||+||+|+++ ..+.......+...+| +.||||+++ +
T Consensus 201 ~~~~-vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~d----i~s~sK~l~-~ 273 (453)
T 2cy8_A 201 DIAA-FIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNHGMQALLDVQPD----LTCLAKASA-G 273 (453)
T ss_dssp GEEE-EEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTCTTHHHHHHTCCCS----EEEEEGGGG-T
T ss_pred CEEE-EEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccCchhhhHHhCCCCc----EEEEChhhh-C
Confidence 4555 45666 57799765 7999999999999999999999999977 4443222212221223 338999998 6
Q ss_pred ccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCc-CChhHHHHHHHHHHHHHHHHHHHHhhc--
Q 045431 283 GVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSP-EGFKAVHEVIGFYKENTDIIVETFNSL-- 359 (433)
Q Consensus 283 G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~-- 359 (433)
|+|+||++++++++..-... .........+.+.+++++.++.++++. . . +++.++++++++++.+.|+++
T Consensus 274 G~~~G~v~~~~~~~~~l~~~---~~~~~~~~~t~~~n~~~~aa~~aal~~~~-~---~~~~~~~~~~~~~l~~~L~~~~~ 346 (453)
T 2cy8_A 274 GLPGGILGGREDVMGVLSRG---SDRKVLHQGTFTGNPITAAAAIAAIDTIL-E---DDVCAKINDLGQFAREAMNHLFA 346 (453)
T ss_dssp TSSCEEEEECHHHHTTSSSC---C---------CCCCHHHHHHHHHHHHHHH-H---TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEechHHHHHHhccc---cCCCceeCCCCCCCHHHHHHHHHHHHHHh-h---hhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998875211100 001112233455788999888887764 2 1 344566667777777766553
Q ss_pred --CCeeecCCCccEEEEECCC-----C------------C---hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccC
Q 045431 360 --GFKVYGGKNAPYVWVQFPG-----R------------S---SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGH 417 (433)
Q Consensus 360 --g~~~~~~~~g~~~~~~~~~-----~------------~---~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~ 417 (433)
++....+..|.++|+.++. . + ..++...+++ +||.+.|+ +.+|+++..+
T Consensus 347 ~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~Gv~v~~~--------~~~~l~~~~t 417 (453)
T 2cy8_A 347 RKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALIL-EGVDIGGR--------GSVFLSAQHE 417 (453)
T ss_dssp HTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHH-TTEECBTT--------TEEECCTTCC
T ss_pred hCCCcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHH-CCeEEeCC--------CCEEeeccCC
Confidence 4433223467899999874 1 1 3456666665 59999653 2478887789
Q ss_pred hhHHHHHHHHHHHhh
Q 045431 418 RGNVLEACKRFKHLY 432 (433)
Q Consensus 418 ~~~l~~~l~~l~~~l 432 (433)
++++++++++|++++
T Consensus 418 ~~~i~~~l~~l~~~l 432 (453)
T 2cy8_A 418 REHVEHLVTTFDRVL 432 (453)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998875
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.2e-27 Score=224.58 Aligned_cols=310 Identities=12% Similarity=0.089 Sum_probs=218.1
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-H
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-L 142 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l 142 (433)
++|+|+. |+ .|+.+.+++.+.+... .|.+..+..++++++++++ +. +++++++|+++++.+ +
T Consensus 9 ~~i~~~~--p~--~~~~~~~a~~~~~~~~-------~~~~~~~~~~l~~~la~~~----~~--~~~~~~~~gt~al~~~~ 71 (393)
T 1mdo_A 9 DFLPFSR--PA--MGAEELAAVKTVLDSG-------WITTGPKNQELEAAFCRLT----GN--QYAVAVSSATAGMHIAL 71 (393)
T ss_dssp CCBCSCC--CC--CCHHHHHHHHHHHHHT-------CCSSSHHHHHHHHHHHHHH----CC--SEEEEESCHHHHHHHHH
T ss_pred cccccCC--CC--CCHHHHHHHHHHHhcC-------CcCCChHHHHHHHHHHHHh----CC--CcEEEecChHHHHHHHH
Confidence 3677776 44 4567788888887642 1334568899999999998 54 489999999999997 5
Q ss_pred HHh-cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEEcCCCC
Q 045431 143 QIV-FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFFCSPNN 216 (433)
Q Consensus 143 ~~l-~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~~p~n 216 (433)
..+ +++||+|++++|+|+++...++..| .+++.++.+++ ++..+++. .+++++|+++ |
T Consensus 72 ~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~-~~~~d~~~l~~~l~~~~~~v~~~---~ 135 (393)
T 1mdo_A 72 MALGIGEGDEVITPSMTWVSTLNMIVLLG------------ANPVMVDVDRD-TLMVTPEHIEAAITPQTKAIIPV---H 135 (393)
T ss_dssp HHTTCCTTCEEEEESSSCHHHHHHHHHTT------------CEEEEECBCTT-TCCBCHHHHHHHCCTTEEEECCB---C
T ss_pred HHcCCCCCCEEEeCCCccHhHHHHHHHCC------------CEEEEEeccCC-cCCCCHHHHHHhcCCCceEEEEe---C
Confidence 677 7999999999999999999888888 47888887653 22233221 2468887765 4
Q ss_pred ccccCCCHHHHHHHHHHHHHcCCEEEEeccccc-cccCCCCCcccccCCCCcceEEEeccc--ccccccccceeeeecc-
Q 045431 217 PTGAAATREQLTRLVQFAKDNGSIIVYDSAYAL-YISDDNPRSIFEIPGAKEVAIETSSFS--KYAGFTGVRLGWTVIP- 292 (433)
Q Consensus 217 PtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~~~vi~i~S~s--K~~~~~G~r~G~l~~~- 292 (433)
|||.+.+ +++|.++|+++|+++|+|++|+. ..+.+.+ +.. .++++.||| |.+ +|.|.||++++
T Consensus 136 ~~G~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~-----~~~---~d~~~~S~~k~K~l--~~~~~g~~~~~~ 202 (393)
T 1mdo_A 136 YAGAPAD---LDAIYALGERYGIPVIEDAAHATGTSYKGRH-----IGA---RGTAIFSFHAIKNI--TCAEGGIVVTDN 202 (393)
T ss_dssp GGGCCCC---HHHHHHHHHHHTCCBCEECTTCTTCEETTEE-----TTS---SSEEEEECCTTSSS--CSSSCEEEEESC
T ss_pred CCCCcCC---HHHHHHHHHHcCCeEEEECccccCCeECCee-----cCC---CCeEEEeCCCCCcc--ccccceEEEeCC
Confidence 8999876 88999999999999999999995 3333211 111 458899999 666 45589999987
Q ss_pred ccccccCCcchhHHHHHHHhhcc------------------------CCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHH
Q 045431 293 KELLFSDGFPVAKDFNRIVCTCF------------------------NGASNISQAGGLACLSPEGFKAVHEVIGFYKEN 348 (433)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 348 (433)
++++ +.+........ ...+.+...++...++ .+++..++.+++
T Consensus 203 ~~~~--------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~-----~~~~~~~~~~~~ 269 (393)
T 1mdo_A 203 PQFA--------DKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQ-----KLDALNARRAAI 269 (393)
T ss_dssp HHHH--------HHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHH-----THHHHHHHHHHH
T ss_pred HHHH--------HHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 4553 44433221110 1124444443333332 245666667778
Q ss_pred HHHHHHHHhhcCCeeec-C-----CCccEEEEECC----CCChHHHHHHHHHcCCeEecCCCCCC--------------C
Q 045431 349 TDIIVETFNSLGFKVYG-G-----KNAPYVWVQFP----GRSSWDVFSEILEKTHVVTTPGSGFG--------------P 404 (433)
Q Consensus 349 ~~~l~~~l~~~g~~~~~-~-----~~g~~~~~~~~----~~~~~~~~~~l~~~~gi~v~~g~~f~--------------~ 404 (433)
++.+.+.|++.++.+.. + .+++++|+.++ +.+..++...+.+ +||.+.+|..+. .
T Consensus 270 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~~~~~~~~~~~~~~~~~~~ 348 (393)
T 1mdo_A 270 AAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKT-KGIGTGLHFRAAHTQKYYRERFPTLTL 348 (393)
T ss_dssp HHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHHHHSSCHHHHHHHHHH-TTBCCBCCCCCGGGSHHHHHHSTTCCC
T ss_pred HHHHHHHHhcCCcccccCCCCCCCceeEEEEEEecccccccCHHHHHHHHHh-CCCCcccccCccccChhhhccCCccCC
Confidence 88899999887766542 2 34568999997 4566677777665 599999987541 0
Q ss_pred C-----CCCeEEEeec--cChhHHHHHHHHHHHhhC
Q 045431 405 G-----GEGFIRVSAF--GHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 405 ~-----~~~~iRi~~~--~~~~~l~~~l~~l~~~l~ 433 (433)
. ..+.+|+++. .+++++++++++|+++++
T Consensus 349 ~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~ 384 (393)
T 1mdo_A 349 PDTEWNSERICSLPLFPDMTESDFDRVITALHQIAG 384 (393)
T ss_dssp HHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 0 1347999975 589999999999998764
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-28 Score=239.18 Aligned_cols=341 Identities=14% Similarity=0.116 Sum_probs=217.8
Q ss_pred CCCceEEecCCC--CCCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHH
Q 045431 61 PDAEVISLGIGD--TTEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 61 ~~~~~i~l~~g~--~~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~ 137 (433)
++...+|++.+. ..+. .++.+.+++.+++.+.. ...+ ..+..+++.++++.+.+.++.++++|++|+|+++
T Consensus 48 ~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~----~~~~--~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggse 121 (449)
T 3a8u_X 48 KGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLD----YSPG--FQYGHPLSFQLAEKITDLTPGNLNHVFFTDSGSE 121 (449)
T ss_dssp TCCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCS----CCCS--SSCCCHHHHHHHHHHHTTSSTTEEEEEEESSHHH
T ss_pred CCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhCC----Cccc--cccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHH
Confidence 455688987654 2332 37999999999886531 1111 0234456666666666555677899999999999
Q ss_pred HHHH-HHHhcC--------CCCEEEEeCCCChhhhh-hHHHhCCcccccccccccceEEEeecCc--cCC---cc-----
Q 045431 138 DISR-LQIVFG--------SNVTMAVQDPSYPAYVD-SSVIMGQTGEFQKDAEKYGKIEYMRCTA--ENG---FF----- 197 (433)
Q Consensus 138 al~~-l~~l~~--------~gd~Vl~~~p~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~---~~----- 197 (433)
++.+ +..+.. +||+|++.+|+|+++.. .+...|.......++.....+..++.+. ... .+
T Consensus 122 a~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~ 201 (449)
T 3a8u_X 122 CALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGG 201 (449)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHH
Confidence 9987 444442 68999999999988654 4444442110000110011233333321 100 11
Q ss_pred ----cCCCC--C----CCccEEEEcCC-CCcccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCC
Q 045431 198 ----PDLST--V----ARTDIIFFCSP-NNPTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGA 265 (433)
Q Consensus 198 ----~~~~~--~----~~~~~i~l~~p-~nPtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~ 265 (433)
.++++ . ++++ +++++| +||||. ..+.+++++|.++|++||++||+||+|.++...+....+......
T Consensus 202 ~~~~~~le~~l~~~~~~~~~-~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~ 280 (449)
T 3a8u_X 202 IALADELLKLIELHDASNIA-AVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMFGADSFGVT 280 (449)
T ss_dssp HHHHHHHHHHHHHHCGGGEE-EEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCC
T ss_pred HHHHHHHHHHHHhcCCCCEE-EEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcchhhhhcCCC
Confidence 11221 1 2444 455667 477997 557999999999999999999999999877554432222222212
Q ss_pred CcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHHH---------HhhccCCCcHHHHHHHHHhcCcCCh
Q 045431 266 KEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNRI---------VCTCFNGASNISQAGGLACLSPEGF 335 (433)
Q Consensus 266 ~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~q~~~~~~l~~~~~ 335 (433)
+| ++ ||||.++ +| +|+||++++++++ +.+... ....+...+++++.++.++++....
T Consensus 281 ~d-i~---s~sK~l~-~G~~~~G~~~~~~~~~--------~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~ 347 (449)
T 3a8u_X 281 PD-LM---CIAKQVT-NGAIPMGAVIASTEIY--------QTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQK 347 (449)
T ss_dssp CS-EE---EECGGGG-TTSSCCEEEEEEHHHH--------HHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHH
T ss_pred CC-EE---EEccccc-CCCCceEEEEECHHHH--------HHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHh
Confidence 23 22 8999998 68 9999999988774 444432 1223445688888888887762211
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcC-Ceee--cCCCccEEEEECCCCC------hHHHHHHHHHcCCeEecCCCCCCCCC
Q 045431 336 KAVHEVIGFYKENTDIIVETFNSLG-FKVY--GGKNAPYVWVQFPGRS------SWDVFSEILEKTHVVTTPGSGFGPGG 406 (433)
Q Consensus 336 ~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~--~~~~g~~~~~~~~~~~------~~~~~~~l~~~~gi~v~~g~~f~~~~ 406 (433)
+...++++++++.+.+.|++++ +... .+..|+++|++++... ..++...++++ ||.+.|+ +
T Consensus 348 ---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~------g 417 (449)
T 3a8u_X 348 ---ENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDGDAIVRPFEAGMALWKA-GFYVRFG------G 417 (449)
T ss_dssp ---TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCBTTBSSHHHHHHHHHHHHH-TEECEEE------T
T ss_pred ---cCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEecCcccccccHHHHHHHHHHC-CcEEecC------C
Confidence 2456777888888888887742 3221 1236789999997421 12566776655 9999986 2
Q ss_pred CCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 407 EGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 407 ~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
+++||+ +..+++++++++++|++++
T Consensus 418 -~~iRis~~~~~t~~~i~~~l~~l~~~l 444 (449)
T 3a8u_X 418 -DTLQFGPTFNSKPQDLDRLFDAVGEVL 444 (449)
T ss_dssp -TEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred -CEEEEECCCcCCHHHHHHHHHHHHHHH
Confidence 689999 4679999999999999875
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.1e-28 Score=236.08 Aligned_cols=340 Identities=9% Similarity=0.013 Sum_probs=211.0
Q ss_pred cCCCCceEEecCCCC--CCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCCh
Q 045431 59 KYPDAEVISLGIGDT--TEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGA 135 (433)
Q Consensus 59 ~~~~~~~i~l~~g~~--~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~ 135 (433)
..+++..|||+.|.. .+. .++.+.+++.+++.+. ....| ..+++.++++++.+.++ ++++|++++|+
T Consensus 48 d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~----~~~~~-----~~~~~~~la~~l~~~~~-~~~~v~~~~gg 117 (427)
T 3fq8_A 48 DVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKG----TSFGA-----PCALENVLAEMVNDAVP-SIEMVRFVNSG 117 (427)
T ss_dssp ETTSCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTC----SCCSS-----CCHHHHHHHHHHHHHST-TCSEEEEESSH
T ss_pred ECCCCEEEECCCchhhhccCCCCHHHHHHHHHHHHhC----CCcCC-----CCHHHHHHHHHHHHhCC-CCCEEEEeCCH
Confidence 345677999988863 232 5899999999988642 11122 34566666666665445 68899999999
Q ss_pred HHHHHHHH---HhcCCCCEEEEeCCCChhhhhhHHHhCCccccc---cccccc-----ceEEEeecCccCCcccCCCCC-
Q 045431 136 KCDISRLQ---IVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQ---KDAEKY-----GKIEYMRCTAENGFFPDLSTV- 203 (433)
Q Consensus 136 ~~al~~l~---~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~---~~~~~~-----~~~~~~~~~~~~~~~~~~~~~- 203 (433)
++++.++. .....++.|++.+|+|+++.......+..++.. ...... ..+..++.++...+...+...
T Consensus 118 sea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 197 (427)
T 3fq8_A 118 TEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENP 197 (427)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETTCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCCCHHHHHHHHHhCC
Confidence 99999743 222445889999999987654433332211100 000000 123344432111111111111
Q ss_pred CCccEEEEcCCCCccccCCC-HHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccc
Q 045431 204 ARTDIIFFCSPNNPTGAAAT-REQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFT 282 (433)
Q Consensus 204 ~~~~~i~l~~p~nPtG~~~~-~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~ 282 (433)
.++++|+++.++|++|.+.+ .+++++|.++|++||++||+||+|.++ ..+...........++ +.||||+++ +
T Consensus 198 ~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~~~d----i~t~sK~~~-~ 271 (427)
T 3fq8_A 198 GEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAYGGVQEKFGVTPD----LTTLGKIIG-G 271 (427)
T ss_dssp TTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTTHHHHHTTCCCS----EEEECGGGG-T
T ss_pred CCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcchhhHhcCCCCC----hhhhhhhhh-C
Confidence 25666665555677787665 666999999999999999999999987 5443222212221122 468999998 8
Q ss_pred ccceeeeeccccccccCCcchhHHHHH---HHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhh-
Q 045431 283 GVRLGWTVIPKELLFSDGFPVAKDFNR---IVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNS- 358 (433)
Q Consensus 283 G~r~G~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~- 358 (433)
|+|+||++++++++ +.+.. .....+.+.++++++++.++++.... +.+.++++++.+.+.+.|++
T Consensus 272 G~~~G~~~~~~~~~--------~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~---~~~~~~~~~~~~~~~~~l~~~ 340 (427)
T 3fq8_A 272 GLPVGAYGGKREIM--------QLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQ---PGTYEYLDQITKRLSDGLLAI 340 (427)
T ss_dssp TSSCEEEEECHHHH--------TTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEEEcHHHH--------HhhccCCCccccCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHH
Confidence 99999999998875 22221 11233445688999988888752211 22344444555555554443
Q ss_pred ---cCCeeecCCCccEEEEECCCC--C------------hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHH
Q 045431 359 ---LGFKVYGGKNAPYVWVQFPGR--S------------SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNV 421 (433)
Q Consensus 359 ---~g~~~~~~~~g~~~~~~~~~~--~------------~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l 421 (433)
+++....+..|+++|+.++.. . ..++...+++ +||.+.|+.. ..+|+++..+++++
T Consensus 341 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~Gi~v~~~~~------~r~~~~~~~t~e~i 413 (427)
T 3fq8_A 341 AQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLE-QGIYLAPSQF------EAGFTSLAHTEEDI 413 (427)
T ss_dssp HHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHH-TTEECCSSTT------SCEECCTTCCHHHH
T ss_pred HHhCCCCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHH-CCcEEecCCC------CCEEeeCcCCHHHH
Confidence 344333334678899998632 1 2356666655 5999998652 35777777899999
Q ss_pred HHHHHHHHHhh
Q 045431 422 LEACKRFKHLY 432 (433)
Q Consensus 422 ~~~l~~l~~~l 432 (433)
++++++|++++
T Consensus 414 ~~~l~~l~~~l 424 (427)
T 3fq8_A 414 DATLAAARTVM 424 (427)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999876
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-27 Score=233.05 Aligned_cols=343 Identities=12% Similarity=0.057 Sum_probs=229.7
Q ss_pred cCCCCceEEecCC--CCCCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCCh
Q 045431 59 KYPDAEVISLGIG--DTTEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGA 135 (433)
Q Consensus 59 ~~~~~~~i~l~~g--~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~ 135 (433)
..+++..|||..| ...+. .++.+.+++.+++.+.. ..+ ...+..+++.++++++.+..+.+.++|++++|+
T Consensus 50 d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~-----~~~-~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sG 123 (476)
T 3i5t_A 50 TEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLP-----YAS-PWYMATSPAARLAEKIATLTPGDLNRIFFTTGG 123 (476)
T ss_dssp ETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCC-----CCC-TTTCBCHHHHHHHHHHHTTSSTTCCEEEEESSH
T ss_pred ECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhcc-----Ccc-cCccCCHHHHHHHHHHHhcCCCCcCEEEEeCch
Confidence 3456778999877 33333 68999999999987532 111 114667889999999987666677899999999
Q ss_pred HHHHHH-HHHhc--------CCCCEEEEeCCCChhhhhhHHHhCCccccc-ccccccceEEEeecCc--cC-Cc------
Q 045431 136 KCDISR-LQIVF--------GSNVTMAVQDPSYPAYVDSSVIMGQTGEFQ-KDAEKYGKIEYMRCTA--EN-GF------ 196 (433)
Q Consensus 136 ~~al~~-l~~l~--------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~--~~-~~------ 196 (433)
++++.. +..+. ..++.|++.+|+|+++......++....+. .+......+..++... .. +.
T Consensus 124 seA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 203 (476)
T 3i5t_A 124 STAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFL 203 (476)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHH
Confidence 999987 44433 346799999999999876666555432211 1111112233333211 00 00
Q ss_pred ---ccCCCC-----C-CCccEEEEcCCCCcccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCccc-ccCCC
Q 045431 197 ---FPDLST-----V-ARTDIIFFCSPNNPTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIF-EIPGA 265 (433)
Q Consensus 197 ---~~~~~~-----~-~~~~~i~l~~p~nPtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~-~~~~~ 265 (433)
..++++ . .++++|++..++|++|. +++.+++++|.++|++||+++|+||+|.+|...+...... .+...
T Consensus 204 ~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~ 283 (476)
T 3i5t_A 204 DDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVV 283 (476)
T ss_dssp HHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccCceeeecccCCC
Confidence 111221 1 34566665555788885 7899999999999999999999999999887666433333 22222
Q ss_pred CcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHHH-------HhhccCCCcHHHHHHHHHhcCcCChhH
Q 045431 266 KEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNRI-------VCTCFNGASNISQAGGLACLSPEGFKA 337 (433)
Q Consensus 266 ~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~~~~~~~ 337 (433)
+| ++ +|||.++ .| +|+|+++++++++ +.+... ....+.+.++++++++.++|+....
T Consensus 284 pd-i~---t~sK~l~-~G~~plg~v~~~~~i~--------~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~-- 348 (476)
T 3i5t_A 284 PD-II---TFAKGVT-SGYVPLGGLAISEAVL--------ARISGENAKGSWFTNGYTYSNQPVACAAALANIELMER-- 348 (476)
T ss_dssp CS-EE---EECGGGG-TTSSCCEEEEECHHHH--------HTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHHHH--
T ss_pred cc-hh---hhhhhhc-CCCcCeEEEEECHHHH--------HHHhcCCcccccccccCCCCcCHHHHHHHHHHHHHHHh--
Confidence 33 33 6899998 78 9999999998875 333321 2334566889999999988863211
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC----CeeecCCCccEEEEECCCCC------------hHHHHHHHHHcCCeEecCCCC
Q 045431 338 VHEVIGFYKENTDIIVETFNSLG----FKVYGGKNAPYVWVQFPGRS------------SWDVFSEILEKTHVVTTPGSG 401 (433)
Q Consensus 338 ~~~~~~~~~~~~~~l~~~l~~~g----~~~~~~~~g~~~~~~~~~~~------------~~~~~~~l~~~~gi~v~~g~~ 401 (433)
+.+.++++++.+++.+.|++++ +.... ..|.++++.+.... ...+...+++ +||.+.|.
T Consensus 349 -~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v~-~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~-- 423 (476)
T 3i5t_A 349 -EGIVDQAREMADYFAAALASLRDLPGVAETR-SVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFE-LGLIVRPL-- 423 (476)
T ss_dssp -TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEE-EETTEEEEEECCC-----CCHHHHHHHHHHHHHHHH-TTEECEEE--
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEE-ecCceeEEEEecCccccccccchhHHHHHHHHHHHH-CCCEEEec--
Confidence 3456667777777777777542 33333 35677888876321 3455566655 49999873
Q ss_pred CCCCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 402 FGPGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 402 f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
+ +++||+ +..+++++++++++|++++
T Consensus 424 ----g-~~iRi~p~l~~t~e~i~~~l~~l~~~l 451 (476)
T 3i5t_A 424 ----G-DLCVISPPLIISRAQIDEMVAIMRQAI 451 (476)
T ss_dssp ----T-TEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred ----C-CEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 2 789999 6779999999999999876
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-27 Score=235.01 Aligned_cols=338 Identities=14% Similarity=0.113 Sum_probs=229.7
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCC---CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA---EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDIS 140 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~---~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~ 140 (433)
.++.|+ +... ...+.+.+++.+.+ ..++.|.+ ..|..++++++++++.+.++++. .+++++|+++++.
T Consensus 67 ~~~~lg-~~~~-~~~p~v~~~~~~~~------~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~-~~~~~~ggt~a~~ 137 (474)
T 1wyu_B 67 TFYPLG-SCTM-KYNPKLHEEAARLF------ADLHPYQDPRTAQGALRLMWELGEYLKALTGMDA-ITLEPAAGAHGEL 137 (474)
T ss_dssp SCCCBT-TTCC-CCCCHHHHHHHHTT------SSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSE-EECCCSSHHHHHH
T ss_pred Cccccc-cccc-cCCHHHHHHHHHHH------HhcCCCCchhhChHHHHHHHHHHHHHHHHHCCCc-eeecChHHHHHHH
Confidence 467787 4433 33345555665542 22334443 56778899999998887556554 4678899999887
Q ss_pred H-HHHh----cCCCC-----EEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCcc
Q 045431 141 R-LQIV----FGSNV-----TMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTD 207 (433)
Q Consensus 141 ~-l~~l----~~~gd-----~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~ 207 (433)
+ +..+ .++|| +|++++|+|+.+...+...| .+++.++.+.++..+.+ +++ .++++
T Consensus 138 ~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G------------~~vv~v~~~~~~~~d~~~L~~~i~~~t~ 205 (474)
T 1wyu_B 138 TGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAG------------YQVREIPSGPEGEVDLEALKRELGPHVA 205 (474)
T ss_dssp HHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTT------------CEEEEECBCTTSSBCHHHHHHHCSTTEE
T ss_pred HHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHHHCC------------CEEEEecCCCCCCcCHHHHHHhhCCCce
Confidence 5 3332 36887 99999999999999888888 47888888643322221 221 35789
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccc-c---
Q 045431 208 IIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFT-G--- 283 (433)
Q Consensus 208 ~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~-G--- 283 (433)
+|++++| ||||.+. +++++|.++|++||+++|+|++|+....+ ..+...+ +..+++.|+||+++.| |
T Consensus 206 ~v~~~~p-n~~G~~~--~~l~~i~~l~~~~g~~li~Dea~~~~~~g--~~~~~~~----g~di~~~s~~K~~~~p~g~gG 276 (474)
T 1wyu_B 206 ALMLTNP-NTLGLFE--RRILEISRLCKEAGVQLYYDGANLNAIMG--WARPGDM----GFDVVHLNLHKTFTVPHGGGG 276 (474)
T ss_dssp EEEECSS-CTTSCCC--TTHHHHHHHHHHHTCEEEEEGGGGGGTTT--TCCHHHH----TCSEEECCTTTTTCCCCTTSC
T ss_pred EEEEECC-CCCcccC--CCHHHHHHHHHHcCCEEEEeCchhhhhcc--CCCcccC----CCcEEEEeCccccccCCCCCC
Confidence 9999998 6899873 35899999999999999999999865432 1122222 2348889999999765 4
Q ss_pred cceeeeeccccccccCCcchhH----HH----HHH---HhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHH
Q 045431 284 VRLGWTVIPKELLFSDGFPVAK----DF----NRI---VCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDII 352 (433)
Q Consensus 284 ~r~G~l~~~~~~~~~~~~~~~~----~~----~~~---~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 352 (433)
+|+||++++++++..-..++.. .+ .+. ......+.+.+++.++..++...+.+++++..+++.++++++
T Consensus 277 ~~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l 356 (474)
T 1wyu_B 277 PGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYL 356 (474)
T ss_dssp CCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999998875211100000 00 000 000112356778888888887544567788899999999999
Q ss_pred HHHHhhcCCeeecCCCccE-EEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc--ChhHHHHHHHHH
Q 045431 353 VETFNSLGFKVYGGKNAPY-VWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG--HRGNVLEACKRF 428 (433)
Q Consensus 353 ~~~l~~~g~~~~~~~~g~~-~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~--~~~~l~~~l~~l 428 (433)
.+.|++.|+++..+...+. +|+.++ +.+..++...|+++ ||.+ |+..|.....+++||++.. +.+++++++++|
T Consensus 357 ~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-Gi~~-~~~~~~~~~~~~lRis~~~~~t~e~id~~~~~L 434 (474)
T 1wyu_B 357 KELLKEKGYRVPYDGPSMHEFVAQPPEGFRALDLAKGLLEL-GFHP-PTVYFPLIVKEALMVEPTETEAKETLEAFAEAM 434 (474)
T ss_dssp HHHHHHTTCBCSSCSSCCSCEEEBCSTTCCHHHHHHHHHHT-TCCC-CEESCSTTSTTCEEECCCTTSCHHHHHHHHHHH
T ss_pred HHHHhhcCcEecCCCCcceEEEEEcCCCCCHHHHHHHHHHC-Cccc-cccccccccCCEEEEEeecCCCHHHHHHHHHHH
Confidence 9999988877643322221 677774 44667777777766 9985 6665643346789999754 899999999999
Q ss_pred HHhhC
Q 045431 429 KHLYK 433 (433)
Q Consensus 429 ~~~l~ 433 (433)
+++++
T Consensus 435 ~~~~~ 439 (474)
T 1wyu_B 435 GALLK 439 (474)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 98763
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.1e-28 Score=236.38 Aligned_cols=341 Identities=8% Similarity=0.009 Sum_probs=221.6
Q ss_pred CCC--ceEEecCCC--CCCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCCh
Q 045431 61 PDA--EVISLGIGD--TTEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGA 135 (433)
Q Consensus 61 ~~~--~~i~l~~g~--~~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~ 135 (433)
+++ ..|||..|. ..+. .++.+.+++.+++.+.. ....++.+.....+|++.+++++ +.+.++|++++|+
T Consensus 71 dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~--~~~~~~~~~~~~~~L~e~la~~~----~~~~~~v~~~~sG 144 (457)
T 3tfu_A 71 DGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMN--HVMFGGLTHEPAARLAKLLVDIT----PAGLDTVFFSDSG 144 (457)
T ss_dssp TTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCS--CCCSSSEECHHHHHHHHHHHHHS----STTEEEEEEESSH
T ss_pred CCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHHhcc--CccccccCCHHHHHHHHHHHHhC----CCCcCEEEEeCcH
Confidence 667 789998773 3333 68999999999987642 11112213334455555555554 6677899999999
Q ss_pred HHHHHH-HHHhcC-------CC-CEEEEeCCCChhhhhhHHHhCC-cccc-cccccccceEEEeecCccCC---cccCCC
Q 045431 136 KCDISR-LQIVFG-------SN-VTMAVQDPSYPAYVDSSVIMGQ-TGEF-QKDAEKYGKIEYMRCTAENG---FFPDLS 201 (433)
Q Consensus 136 ~~al~~-l~~l~~-------~g-d~Vl~~~p~~~~~~~~~~~~g~-~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~ 201 (433)
++++.+ +..+.. +| +.|++.+++|++.......++. ...+ ..+.........++...... ...+++
T Consensus 145 seA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le 224 (457)
T 3tfu_A 145 SVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFE 224 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHH
Confidence 999997 444433 55 5899999999887655554421 1110 00111111233333322110 011122
Q ss_pred C-----CCCccEEEEcC-CCCccccCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEec
Q 045431 202 T-----VARTDIIFFCS-PNNPTGAAA-TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSS 274 (433)
Q Consensus 202 ~-----~~~~~~i~l~~-p~nPtG~~~-~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S 274 (433)
+ .+++++|++.. ++||+|.++ +.+.+++|.++|++||+++|+||+|.+|...+.......+...+| ++ |
T Consensus 225 ~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~a~~~~~~~pd-ii---t 300 (457)
T 3tfu_A 225 AQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPD-IM---C 300 (457)
T ss_dssp HHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCS-EE---E
T ss_pred HHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccchhHhHhcCCCce-EE---E
Confidence 1 14566666665 689999876 788899999999999999999999998866654433333322233 33 8
Q ss_pred ccccccccc-cceeeeeccccccccCCcchhHHHHH-----HHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHH
Q 045431 275 FSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNR-----IVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKEN 348 (433)
Q Consensus 275 ~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 348 (433)
|||.++ +| +|+||++++++++ +.+.. +....+.+.++++++++.+.|+.... +.+.++++++
T Consensus 301 ~sK~l~-gG~~~lG~v~~~~~i~--------~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~---~~~~~~~~~~ 368 (457)
T 3tfu_A 301 VGKALT-GGYLSLAATLCTADVA--------HTISAGAAGALMHGPTFMANPLACAVSVASVELLLG---QDWRTRITEL 368 (457)
T ss_dssp ECGGGG-TTSSCCEEEEEEHHHH--------HHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHHT---SCHHHHHHHH
T ss_pred EChhhh-CCCcceEEEEEcHHHH--------HHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHhh---hHHHHHHHHH
Confidence 999987 56 7999999998885 44431 12334566789999988888762111 2345566677
Q ss_pred HHHHHHHHhhc----CCeeecCCCccEEEEECCC-CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe--eccChhHH
Q 045431 349 TDIIVETFNSL----GFKVYGGKNAPYVWVQFPG-RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS--AFGHRGNV 421 (433)
Q Consensus 349 ~~~l~~~l~~~----g~~~~~~~~g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~~~l 421 (433)
.+++.+.|+++ ++.... ..|+++++.++. .+..++...++++ ||.+.|. .+++||+ +..+++++
T Consensus 369 ~~~l~~~L~~l~~~~~v~~vr-~~G~~~~i~l~~~~~~~~~~~~l~~~-Gv~v~~~-------~~~lRi~p~~~~t~eei 439 (457)
T 3tfu_A 369 AAGLTAGLDTARALPAVTDVR-VCGAIGVIECDRPVDLAVATPAALDR-GVWLRPF-------RNLVYAMPPYICTPAEI 439 (457)
T ss_dssp HHHHHHHHGGGGGSTTEEEEE-ECSSCEEEEESSCCCHHHHHHHHHHT-TEECCCB-------TTEEEECCCTTCCHHHH
T ss_pred HHHHHHHHHHHhcCCCeeeee-cCCeEEEEEECCcccHHHHHHHHHHC-CeEEEec-------CCEEEEECCCCCCHHHH
Confidence 77777777764 233333 357888888873 3456777777665 9999873 2689998 45699999
Q ss_pred HHHHHHHHHhh
Q 045431 422 LEACKRFKHLY 432 (433)
Q Consensus 422 ~~~l~~l~~~l 432 (433)
++++++|++++
T Consensus 440 ~~~l~~L~~~l 450 (457)
T 3tfu_A 440 TQITSAMVEVA 450 (457)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999876
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-27 Score=234.69 Aligned_cols=323 Identities=15% Similarity=0.129 Sum_probs=209.5
Q ss_pred eEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HH
Q 045431 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQ 143 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~ 143 (433)
.+|+..+.+ . +.+.+++.+.+.. ....|++..+..+|++++++++ +. ++|++|+|+++++.+ +.
T Consensus 45 ylD~~~~~~---~-~~v~~a~~~~~~~-----~~~~y~~~~~~~~l~~~la~~~----~~--~~v~~t~ggt~A~~~al~ 109 (467)
T 1ax4_A 45 YIDLLTDSG---T-NAMSDHQWAAMIT-----GDEAYAGSRNYYDLKDKAKELF----NY--DYIIPAHQGRGAENILFP 109 (467)
T ss_dssp SEECSCSSS---C-CCEEHHHHHHHHT-----CCCCSSSCHHHHHHHHHHHHHH----CC--CEEEEESSHHHHHHHHHH
T ss_pred eeecccCcC---C-HHHHHHHHHHHhh-----cccccccCccHHHHHHHHHHHc----CC--CcEEEcCCcHHHHHHHHH
Confidence 466644432 2 5556666666542 2346777778999999999998 43 699999999999987 56
Q ss_pred HhcC----CCCE---EEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCc----c----CCcccCCC---C--C
Q 045431 144 IVFG----SNVT---MAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTA----E----NGFFPDLS---T--V 203 (433)
Q Consensus 144 ~l~~----~gd~---Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~---~--~ 203 (433)
.++. +||. |+++.+.|..+...+...|. .++.++... + .....+++ + .
T Consensus 110 ~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~~~~g~------------~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~ 177 (467)
T 1ax4_A 110 VLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGC------------KAINIVTEKAFDSETYDDWKGDFDIKKLKENIA 177 (467)
T ss_dssp HHHHHHHHTTCCSSCEEEESSCCHHHHHHHHHTTC------------EEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHH
T ss_pred HHHHhhccCCCccceEEEeccccchhhHHHhccCC------------ceecccccccccccccCCcccccCHHHHHHHHH
Confidence 6677 9998 99887777777777777774 444333211 0 01112222 1 1
Q ss_pred ----CCccEEEEcCCCCcc-ccCCCHHHHHHHHHHHHHcCCEEEEeccccc--c--------ccCCCCCcccccC----C
Q 045431 204 ----ARTDIIFFCSPNNPT-GAAATREQLTRLVQFAKDNGSIIVYDSAYAL--Y--------ISDDNPRSIFEIP----G 264 (433)
Q Consensus 204 ----~~~~~i~l~~p~nPt-G~~~~~~~~~~i~~~a~~~~~~li~De~~~~--~--------~~~~~~~~~~~~~----~ 264 (433)
+++++|++++||||| |.+++.+++++|+++|++||++||+|+++.. . .+.+ .++..+. .
T Consensus 178 ~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 255 (467)
T 1ax4_A 178 QHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKN--ATIKEVIFDMYK 255 (467)
T ss_dssp HHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTT--CCHHHHHHHHGG
T ss_pred hcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCC--Cchhhhhhhhcc
Confidence 268899999999999 8999999999999999999999999998653 1 1222 2222221 1
Q ss_pred CCcceEEEeccccccccc-ccceeeeecc-c-cccccCCcchhHHHHHHHhh--c--cC-CCcHHHHHHHHHhcCcCChh
Q 045431 265 AKEVAIETSSFSKYAGFT-GVRLGWTVIP-K-ELLFSDGFPVAKDFNRIVCT--C--FN-GASNISQAGGLACLSPEGFK 336 (433)
Q Consensus 265 ~~~~vi~i~S~sK~~~~~-G~r~G~l~~~-~-~~~~~~~~~~~~~~~~~~~~--~--~~-~~~~~~q~~~~~~l~~~~~~ 336 (433)
..| +++.|+||++|++ | ||++++ + +++ +.+...... . .. +.+...+.++...++....
T Consensus 256 ~~d--~~~~s~sK~~g~~~G---g~~~~~d~~~l~--------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~- 321 (467)
T 1ax4_A 256 YAD--ALTMSAKKDPLLNIG---GLVAIRDNEEIF--------TLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTE- 321 (467)
T ss_dssp GCS--EEEEETTSTTCCSSC---EEEEESSCHHHH--------HHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTC-
T ss_pred ccc--eEEEeccccCCCCcc---eEEEeCCHHHHH--------HHHHhhccccccccccCCccchHHHHHHHHHHHhhh-
Confidence 122 5568999998765 3 677777 4 553 444333211 1 11 2233222222223321111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEE-------CCC--CChHHHHHHHHHcCCeEecC-CCCC-CC-
Q 045431 337 AVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQ-------FPG--RSSWDVFSEILEKTHVVTTP-GSGF-GP- 404 (433)
Q Consensus 337 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~-------~~~--~~~~~~~~~l~~~~gi~v~~-g~~f-~~- 404 (433)
++..++..++++.+.+.|++.++.+..+.+++++|++ ++. .+..++...+++++||.+.| |..| +.
T Consensus 322 --~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~ 399 (467)
T 1ax4_A 322 --EEYLHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRD 399 (467)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBC
T ss_pred --hhHHHHHHHHHHHHHHHHHhCCCCcccCCCceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccccccc
Confidence 1222333466788888888778887777889999999 432 23456777764667999998 6432 11
Q ss_pred --------CCCCeEEEeec---cChhHHHHHHHHHHHhh
Q 045431 405 --------GGEGFIRVSAF---GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 405 --------~~~~~iRi~~~---~~~~~l~~~l~~l~~~l 432 (433)
...+++||++. .+++++++++++|++++
T Consensus 400 ~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~ 438 (467)
T 1ax4_A 400 PATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLK 438 (467)
T ss_dssp TTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTH
T ss_pred cccccccccccceEEEecccccCCHHHHHHHHHHHHHHH
Confidence 12479999975 58999999999998765
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-27 Score=227.60 Aligned_cols=318 Identities=14% Similarity=0.071 Sum_probs=208.6
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCC--CCCHHHHHHHHHHHhccCCCC-CCcEEE-cCChHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAE--QGEKPLRAAIASTFYKDLGIE-EGDIFV-SDGAKCDI 139 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~--~g~~~lr~~la~~l~~~~~~~-~~~i~~-~~G~~~al 139 (433)
.+++++.|. .++|+.+.+++.+..... .....+++. ....++|+.+++++ +++ +++|++ |+|+++++
T Consensus 40 ~~~~~~~~~--~~~~~~v~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~la~~~----g~~~~~~i~~~t~g~t~al 110 (398)
T 2fyf_A 40 RDGRFGSGP--SKVRLEQLQTLTTTAAAL---FGTSHRQAPVKNLVGRVRSGLAELF----SLPDGYEVILGNGGATAFW 110 (398)
T ss_dssp SSCBCCSSS--CCCCHHHHHGGGTTTTTT---TTSCTTSHHHHHHHHHHHHHHHHHT----TCCTTCEEEEEETCHHHHH
T ss_pred CCccccCCC--CCCCHHHHHHHhhcCCCc---cCcCcCCHHHHHHHHHHHHHHHHHh----CCCCCceEEEeCCchhHHH
Confidence 456776553 367888888876631100 111122221 12345666666655 776 479999 99999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCChhh-hhhHHHh--CCcccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCC
Q 045431 140 SR-LQIVFGSNVTMAVQDPSYPAY-VDSSVIM--GQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPN 215 (433)
Q Consensus 140 ~~-l~~l~~~gd~Vl~~~p~~~~~-~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~ 215 (433)
.+ +..++++| .+++..+.|... ....... | ..++.++.+. +...+.+..+++++|++++|+
T Consensus 111 ~~~~~~l~~~g-v~~v~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~--g~~~~~~i~~~~~~v~~~~~~ 175 (398)
T 2fyf_A 111 DAAAFGLIDKR-SLHLTYGEFSAKFASAVSKNPFV------------GEPIIITSDP--GSAPEPQTDPSVDVIAWAHNE 175 (398)
T ss_dssp HHHHHHTCSSC-EEEEECSHHHHHHHHHHHHCTTS------------CCCEEEECCT--TCCCCCCCCTTCSEEEEESEE
T ss_pred HHHHHHhcCCC-eEEEeCCHHHHHHHHHHHHhCCC------------CceEEEecCC--CCCCCccccCCCCEEEEeCcC
Confidence 97 57778887 223333333211 1123333 3 2566666652 222222334678999999999
Q ss_pred CccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccc
Q 045431 216 NPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKEL 295 (433)
Q Consensus 216 nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~ 295 (433)
||||.+++.+++.++ +|+++|+|++|+.+.. +.++. +..+++.|+||++|++| ++||+++++++
T Consensus 176 nptG~~~~~~~i~~~------~~~~vivD~a~~~~~~---~~~~~------~~di~~~s~sK~~~~~g-g~g~l~~~~~~ 239 (398)
T 2fyf_A 176 TSTGVAVAVRRPEGS------DDALVVIDATSGAGGL---PVDIA------ETDAYYFAPQKNFASDG-GLWLAIMSPAA 239 (398)
T ss_dssp TTTTEECCCCCCTTC------C-CEEEEECTTTTTTS---CCCGG------GCSEEEECTTSTTCSCS-SEEEEEECHHH
T ss_pred CCcceecchHHhhhh------cCCeEEEEeccccCCc---ccCcc------cCcEEEEecCcccCCCC-ceEEEEECHHH
Confidence 999999997766655 8999999999986432 22221 12388999999998664 69999999887
Q ss_pred cccCCcchhHHHHHH-----------------H----hhccCCCcHHHHHHHHHhcCcCChhH-HHHHHHHHHHHHHHHH
Q 045431 296 LFSDGFPVAKDFNRI-----------------V----CTCFNGASNISQAGGLACLSPEGFKA-VHEVIGFYKENTDIIV 353 (433)
Q Consensus 296 ~~~~~~~~~~~~~~~-----------------~----~~~~~~~~~~~q~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~ 353 (433)
+ +.+.+. . .....+.+...+.++.++++...... +++++++++++++++.
T Consensus 240 ~--------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~ 311 (398)
T 2fyf_A 240 L--------SRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLY 311 (398)
T ss_dssp H--------HHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred H--------HHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 5 333211 0 12223456666666666665211121 6888999999999999
Q ss_pred HHHhhc-CCeeec--C--CCccEEEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec--cChhHHHHHH
Q 045431 354 ETFNSL-GFKVYG--G--KNAPYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF--GHRGNVLEAC 425 (433)
Q Consensus 354 ~~l~~~-g~~~~~--~--~~g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~l~~~l 425 (433)
+.|+++ |+.+.. + ..++++|++++ +.+..++...|.++ ||.+.+|. ...+.+++||++. .+++++++++
T Consensus 312 ~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-gI~v~~g~--~~~~~~~iRis~~~~~t~e~i~~~~ 388 (398)
T 2fyf_A 312 SWAQERPYTTPFVTDPGLRSQVVGTIDFVDDVDAGTVAKILRAN-GIVDTEPY--RKLGRNQLRVAMFPAVEPDDVSALT 388 (398)
T ss_dssp HHHHHSTTEEESCCSGGGBCSSEEEEEECTTSCHHHHHHHHHHT-TCBCCSCC--TTTCSSEEEEECCTTSCHHHHHHHH
T ss_pred HHHHHcCCceeccCChhhcCCcEEEEECCCCCCHHHHHHHHHHC-CcEEecCc--ccCCCCEEEEEecCCCCHHHHHHHH
Confidence 999998 888763 3 23458999996 45667777777766 99999873 2233578999975 5899999999
Q ss_pred HHHHHhh
Q 045431 426 KRFKHLY 432 (433)
Q Consensus 426 ~~l~~~l 432 (433)
++|++++
T Consensus 389 ~~l~~~l 395 (398)
T 2fyf_A 389 ECVDWVV 395 (398)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.1e-27 Score=234.27 Aligned_cols=327 Identities=13% Similarity=0.086 Sum_probs=222.0
Q ss_pred hHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCC--CcE--EEcCChHHHHHH-HHHhcCCC---
Q 045431 78 PEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEE--GDI--FVSDGAKCDISR-LQIVFGSN--- 149 (433)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~--~~i--~~~~G~~~al~~-l~~l~~~g--- 149 (433)
.+.+.+++.+++....+ .....|....+..++++++++++.+.+++++ +++ ++|+|+++++.+ +..+..+|
T Consensus 109 ~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~ 187 (514)
T 3mad_A 109 DEHHIAFLNEVYALQSQ-SNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARAT 187 (514)
T ss_dssp CHHHHHHHHHHHHHHTT-CCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhh-cCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhh
Confidence 34444455554443221 2233454455777888899888887556553 788 999999999997 56666666
Q ss_pred -----CEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEEEEcCCCCccccC
Q 045431 150 -----VTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIFFCSPNNPTGAA 221 (433)
Q Consensus 150 -----d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~~p~nPtG~~ 221 (433)
|+|+++.|+|.++...++..| .+++.++.+.+..++.+ +++ .+++++|++++|+||||.+
T Consensus 188 ~g~~~d~Vi~~~~~~~~~~~~~~~~G------------~~v~~v~~~~~~~~d~~~Le~~i~~~~~~v~~~~~~nptG~~ 255 (514)
T 3mad_A 188 KGITAPEAVVPVSAHAAFDKAAQYFG------------IKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVV 255 (514)
T ss_dssp HCCSSCEEEEETTSCTHHHHHHHHHT------------CEEEEECBCTTSCBCHHHHHHHCCTTEEEEEEETTCTTTCCC
T ss_pred cCCCCCeEEEeCccchHHHHHHHHcC------------CeeEEeeeCCCCCCCHHHHHHHhccCCEEEEEeCCCCCCccc
Confidence 999999999999999999999 47888888754332222 221 3578999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEeccccccccC-----CCCCcccccCCCCcceEEEecccccccccccceeeeecccccc
Q 045431 222 ATREQLTRLVQFAKDNGSIIVYDSAYALYISD-----DNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELL 296 (433)
Q Consensus 222 ~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~-----~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~ 296 (433)
.+ +++|.++|++||+++|+|++|+++... +.+.+..... ..+..+++.|++|+++ +|.++|+++++++.+
T Consensus 256 ~~---l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~-~~g~d~~~~s~~K~l~-~~~~~g~~~~~~~~~ 330 (514)
T 3mad_A 256 DP---IPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFR-LEGVTSVSADTHKYGY-GAKGTSVILYRRPDL 330 (514)
T ss_dssp CC---HHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTT-STTCCEEEECTTTTTC-CCSSCEEEEESSHHH
T ss_pred cC---HHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCccccc-CCCCcEEEECchhccC-CCCCeEEEEEeCHHH
Confidence 88 788999999999999999999976541 1111111111 1234588999999974 888999999887664
Q ss_pred ccCCcchhHHHH--HHH----hhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCCc
Q 045431 297 FSDGFPVAKDFN--RIV----CTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNA 369 (433)
Q Consensus 297 ~~~~~~~~~~~~--~~~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g 369 (433)
..........+. ... ..+....+.+++.+++..+. ..++++..++..++++++.+.|++. |+.+..+. .
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~---~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~ 406 (514)
T 3mad_A 331 LHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLG---EEGYLDATRRILQAADRLKAGVRAIPSLKILGDP-L 406 (514)
T ss_dssp HTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCC-S
T ss_pred hccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCC-e
Confidence 211000000000 000 00111111234444444432 3456888889999999999999987 88887654 4
Q ss_pred cEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec---cChhHHHHHHHHHHHhh
Q 045431 370 PYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF---GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~---~~~~~l~~~l~~l~~~l 432 (433)
.++|+..++.+..++.+.+.++ ||.+ +|..| ++++|+++. .+++++++++++|++++
T Consensus 407 ~~~~~~~~~~~~~~l~~~L~~~-Gi~v-~g~~~----~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l 466 (514)
T 3mad_A 407 WVIAVASDELNIYQVMEEMAGR-GWRL-NGLHR----PPAFHVALTLRHTEPGVVDRFLADLQDAV 466 (514)
T ss_dssp SEEEEECSSSCHHHHHHHHHTT-TCBC-EEETT----TTEEEEECCGGGGSTTHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHhc-CCEe-ccCCC----CCeEEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 4788887766677777777655 9988 55433 467999964 35799999999998875
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.9e-27 Score=232.52 Aligned_cols=330 Identities=8% Similarity=-0.010 Sum_probs=228.3
Q ss_pred CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCC--CCcEEEcCChHHHHHH-HHHhcC-----
Q 045431 76 PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIE--EGDIFVSDGAKCDISR-LQIVFG----- 147 (433)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~--~~~i~~~~G~~~al~~-l~~l~~----- 147 (433)
+.++.+.+++.+++..... .....|....|..++++.+++++.+.++++ ++++++++|+++++.+ +..+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~ 153 (497)
T 3mc6_A 75 HGGDDLIHLQTIAYEKYCV-ANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHH 153 (497)
T ss_dssp CCCHHHHHHHHHHHHHTSS-CBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhh-cCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhc
Confidence 4557888888888775432 233456556778899999999988766665 7899999999999987 455543
Q ss_pred CC---CEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCc-cCCcccC-CCC--CCCccEEEEcCCCCcccc
Q 045431 148 SN---VTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTA-ENGFFPD-LST--VARTDIIFFCSPNNPTGA 220 (433)
Q Consensus 148 ~g---d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~--~~~~~~i~l~~p~nPtG~ 220 (433)
+| |+|+++.|+|+.+...+..+| .+++.++.++ +...+.+ +++ .+++++|++++|+||||.
T Consensus 154 ~g~~~~~Vi~~~~~h~~~~~~~~~~G------------~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~ 221 (497)
T 3mc6_A 154 RGITEPEIIAPVTAHAGFDKAAYYFG------------MKLRHVELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGI 221 (497)
T ss_dssp SCCSSCEEEEETTSCHHHHHHHHHSC------------CEEEEECBCTTTCSBCTTTTGGGCCSSEEEEEEETTCTTTCC
T ss_pred CCCCCceEEEeCCccHHHHHHHHHcC------------CeEEEEecCcccCcCCHHHHHHHHhhCCEEEEEECCCCCCCc
Confidence 56 899999999999999999998 4788888865 2222222 222 357899999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEeccccccccC-----CCC-CcccccCCCCcceEEEecccccccccccceeeeecccc
Q 045431 221 AATREQLTRLVQFAKDNGSIIVYDSAYALYISD-----DNP-RSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKE 294 (433)
Q Consensus 221 ~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~-----~~~-~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~ 294 (433)
+.+ +++|.++|++||+++|+|++|+.+... +.. .+-.... ..+..+++.|++|+++ +|.++||++++++
T Consensus 222 ~~~---l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~-~~g~d~~~~s~~K~l~-~~~~~g~~~~~~~ 296 (497)
T 3mc6_A 222 ADD---IEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFR-VPGVTSISCDTHKYGF-APKGSSVIMYRNS 296 (497)
T ss_dssp CCS---CTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTT-STTCCEEEEETTTTTC-CCSSCEEEECSSH
T ss_pred CCC---HHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCcccccc-CCCCcEEEECchhhcC-CCCCceeEEecCH
Confidence 988 778999999999999999999864321 100 1011111 1234588889999874 8889999999876
Q ss_pred ccccCCcchhHHHHHH--HhhccC-C---CcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc--CCeeecC
Q 045431 295 LLFSDGFPVAKDFNRI--VCTCFN-G---ASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL--GFKVYGG 366 (433)
Q Consensus 295 ~~~~~~~~~~~~~~~~--~~~~~~-~---~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g~~~~~~ 366 (433)
.+..........+... ...... . ....++.++...+. ...+++..++..++++++.+.|++. |+.+..+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~---~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~ 373 (497)
T 3mc6_A 297 DLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMG---ENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGN 373 (497)
T ss_dssp HHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSC
T ss_pred HHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecC
Confidence 6421100000000000 000000 0 01344555555554 2345778888899999999999994 8888765
Q ss_pred CCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec-cChhHHHHHHHHHHHhh
Q 045431 367 KNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF-GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 367 ~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~-~~~~~l~~~l~~l~~~l 432 (433)
..+.++++..++.+..++...|.++ ||.+.++.. +..+|+++. .+.+++++++++|++++
T Consensus 374 ~~~~~v~~~~~~~~~~~l~~~L~~~-Gi~v~~~~~-----~~~~ri~~~~~t~e~i~~~~~~L~~~l 434 (497)
T 3mc6_A 374 PRYSVISFSSKTLNIHELSDRLSKK-GWHFNALQK-----PVALHMAFTRLSAHVVDEICDILRTTV 434 (497)
T ss_dssp CCSSEEEEECTTTTHHHHHHHHHTT-TCBCEECCS-----SCCEEEECCTTTTCTHHHHHHHHHHHH
T ss_pred CCeeEEEEeCCCCCHHHHHHHHHhC-CEEEecCCC-----CCeEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 6667777777766677777777655 998876542 346899864 48999999999998875
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=233.05 Aligned_cols=341 Identities=11% Similarity=0.050 Sum_probs=204.4
Q ss_pred cCCCCceEEecCCCCC--CC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCCh
Q 045431 59 KYPDAEVISLGIGDTT--EP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGA 135 (433)
Q Consensus 59 ~~~~~~~i~l~~g~~~--~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~ 135 (433)
..+++..+|+..+... +. .++.+.+++.+++.+. ....| +.....+|++.+++++ + .+++|++++|+
T Consensus 49 d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~----~~~~~-~~~~~~~la~~l~~~~----~-~~~~v~~~~sG 118 (429)
T 4e77_A 49 DVDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERG----LSFGA-PTEMEVKMAQLVTDLV----P-TMDMVRMVNSG 118 (429)
T ss_dssp ETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTC----SCCSS-CCHHHHHHHHHHHHHS----T-TCSEEEEESSH
T ss_pred ECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhC----cccCC-CCHHHHHHHHHHHhhC----C-CCCEEEEeCcH
Confidence 4456789999877642 32 5899999999998752 11234 3334455555555553 4 67899999999
Q ss_pred HHHHHH-HHH--hcCCCCEEEEeCCCChhhhhhHHHhCCccccc-----ccc---cccceEEEeecCccCCcccCCCCCC
Q 045431 136 KCDISR-LQI--VFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQ-----KDA---EKYGKIEYMRCTAENGFFPDLSTVA 204 (433)
Q Consensus 136 ~~al~~-l~~--l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (433)
++++.+ +.. ...+++.|++.+++|++...........+... ..+ .....+..++.++...+...+....
T Consensus 119 sea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 198 (429)
T 4e77_A 119 TEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQYP 198 (429)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECTTCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCCCHHHHHHHHHhcC
Confidence 999997 432 22467899999999988654222111100000 000 0001223333321101110011112
Q ss_pred CccEEEEcCCCCccccCC--CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccc
Q 045431 205 RTDIIFFCSPNNPTGAAA--TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFT 282 (433)
Q Consensus 205 ~~~~i~l~~p~nPtG~~~--~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~ 282 (433)
+..++++++|+||+|..+ +.+.+++|.++|++||+++|+||+|.++ ..+.......+...+| +.||||.++ +
T Consensus 199 ~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~~~~~~~~~~~pd----i~t~sK~~~-~ 272 (429)
T 4e77_A 199 QEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVALAGAQDYYHVIPD----LTCLGKIIG-G 272 (429)
T ss_dssp TTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBTTCHHHHTTCCCS----EEEEEGGGG-T
T ss_pred CCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCcchHHHhcCCCCC----eeeeccccc-C
Confidence 233456678876655333 4566999999999999999999999988 5443322222222223 348999998 8
Q ss_pred ccceeeeeccccccccCCcchhHHHHH---HHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHH---
Q 045431 283 GVRLGWTVIPKELLFSDGFPVAKDFNR---IVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETF--- 356 (433)
Q Consensus 283 G~r~G~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l--- 356 (433)
|+|+||++++++++ +.+.. .....+++.+++++.++.++++.... +...++++++.+.+.+.|
T Consensus 273 G~~~G~~~~~~~~~--------~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~ 341 (429)
T 4e77_A 273 GMPVGAFGGRREVM--------NALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQ---VGVYETLTELTDSLATGLRHA 341 (429)
T ss_dssp TSCCEEEEECHHHH--------TTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECHHHH--------HHhccCCCccccCCCCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHH
Confidence 99999999998875 22221 11334456788999888888762211 223333444444444444
Q ss_pred -hhcCCeeecCCCccEEEEECCCCC---------------hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhH
Q 045431 357 -NSLGFKVYGGKNAPYVWVQFPGRS---------------SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGN 420 (433)
Q Consensus 357 -~~~g~~~~~~~~g~~~~~~~~~~~---------------~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~ 420 (433)
.++++....+..|+++|+.++... ..++...++++ ||.+.|+. ...+|+++..++++
T Consensus 342 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~------~~~~~~~~~~t~e~ 414 (429)
T 4e77_A 342 AKEENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEE-GVYLAPSA------FEAGFMSLAHSNED 414 (429)
T ss_dssp HHHTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHT-TEECCSST------TSCEECCTTCCHHH
T ss_pred HHhCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHC-CeEEeecC------CCCEEEeccCCHHH
Confidence 444544333346889999987431 15666666655 99999874 23578887889999
Q ss_pred HHHHHHHHHHhhC
Q 045431 421 VLEACKRFKHLYK 433 (433)
Q Consensus 421 l~~~l~~l~~~l~ 433 (433)
+++++++|+++++
T Consensus 415 i~~~l~~l~~~l~ 427 (429)
T 4e77_A 415 IQKTVNAARRCFA 427 (429)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998864
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-28 Score=236.75 Aligned_cols=338 Identities=10% Similarity=0.046 Sum_probs=211.6
Q ss_pred CCCCceEEecCCCC--CCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChH
Q 045431 60 YPDAEVISLGIGDT--TEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAK 136 (433)
Q Consensus 60 ~~~~~~i~l~~g~~--~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~ 136 (433)
.++...|||+.|.. .+. .++.+.+++.+++.+. ....| ..++++++++++.+.++ .+++|++++|++
T Consensus 49 ~~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~----~~~~~-----~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~ 118 (424)
T 2e7u_A 49 ADGNRYLDYVMSWGPLILGHAHPKVLARVRETLERG----LTFGA-----PSPLEVALAKKVKRAYP-FVDLVRFVNSGT 118 (424)
T ss_dssp TTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTC----SCCSS-----CCHHHHHHHHHHHHHCT-TCCEEEEESSHH
T ss_pred CCCCEEEEccccccccccCCCCHHHHHHHHHHHHhC----CCCCC-----CCHHHHHHHHHHHHhCC-CCCEEEEeCCHH
Confidence 45567899987752 232 6899999999998641 11123 34555555555554334 678999999999
Q ss_pred HHHHHH-HH--hcCCCCEEEEeCCCChhhhhhHH-HhCCcc-cc---cccccc---cceEEEeecCccCCcccCCCCC-C
Q 045431 137 CDISRL-QI--VFGSNVTMAVQDPSYPAYVDSSV-IMGQTG-EF---QKDAEK---YGKIEYMRCTAENGFFPDLSTV-A 204 (433)
Q Consensus 137 ~al~~l-~~--l~~~gd~Vl~~~p~~~~~~~~~~-~~g~~~-~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~ 204 (433)
+++.++ .. .+.+++.|++.+|+|+++..... ..|... .+ ...+.. ...++.++.++...+...+... +
T Consensus 119 ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 198 (424)
T 2e7u_A 119 EATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYNDPEGLREVLKRRGE 198 (424)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCCCCHHHHHHHHHhCCC
Confidence 999874 32 24456889999999988654332 111100 00 000000 0123444432111111001111 2
Q ss_pred CccEEEEcCCCCc-cccCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccc
Q 045431 205 RTDIIFFCSPNNP-TGAAA-TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFT 282 (433)
Q Consensus 205 ~~~~i~l~~p~nP-tG~~~-~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~ 282 (433)
+++ +++++|+|+ ||.++ +.+++++|.++ ++||++||+||+|.++ ..+.......+...++ +.||||+++ +
T Consensus 199 ~~~-~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~d----i~s~sK~l~-~ 270 (424)
T 2e7u_A 199 EIA-AIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLAFGGATELLGLKPD----LVTLGKILG-G 270 (424)
T ss_dssp GEE-EEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT-TSSTTHHHHHHTCCCS----EEEECGGGG-T
T ss_pred CEE-EEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc-ccchhHHHHHhCCCcc----hhhhhhhhh-C
Confidence 344 566688655 89765 79999999999 9999999999999987 4332221112221223 239999998 7
Q ss_pred ccceeeeeccccccccCCcchhHHHHH---HHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc
Q 045431 283 GVRLGWTVIPKELLFSDGFPVAKDFNR---IVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 283 G~r~G~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 359 (433)
|+|+||++++++++ +.+.. .....+.+.+++++.++.++++.... .+++.++++++++++.+.|+++
T Consensus 271 G~~~G~~~~~~~~~--------~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~l~~~L~~~ 340 (424)
T 2e7u_A 271 GLPAAAYAGRREIM--------EKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEE--NPGYYAYLEDLGARLEAGLKEV 340 (424)
T ss_dssp TSSCEEEEECHHHH--------TTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHH--CTHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEEEcHHHH--------hhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998875 22222 11223445788899888888763211 1446677777777777777663
Q ss_pred ----CCeeecCCCccEEEEECCCC--------------ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHH
Q 045431 360 ----GFKVYGGKNAPYVWVQFPGR--------------SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNV 421 (433)
Q Consensus 360 ----g~~~~~~~~g~~~~~~~~~~--------------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l 421 (433)
++....+..|.++|+.++.. ...++...++ ++||.+.|+.. ..+|+++..+++++
T Consensus 341 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~------~~~~~~~~~t~~~i 413 (424)
T 2e7u_A 341 LKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLL-DRGIYWPPSNF------EAAFLSVAHREEDV 413 (424)
T ss_dssp HHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHH-TTTEECCSSSS------SCEECCTTCCHHHH
T ss_pred HHhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHH-HCCeEEeccCC------CceEeeccCCHHHH
Confidence 54321123577999998741 1234566665 56999998742 35888888899999
Q ss_pred HHHHHHHHHhh
Q 045431 422 LEACKRFKHLY 432 (433)
Q Consensus 422 ~~~l~~l~~~l 432 (433)
++++++|++++
T Consensus 414 ~~~l~~l~~~l 424 (424)
T 2e7u_A 414 EKTLEALRKAL 424 (424)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999999874
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=225.65 Aligned_cols=334 Identities=11% Similarity=0.046 Sum_probs=210.7
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhccc--CCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALST--QEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR 141 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~ 141 (433)
..|+|..+++. .++.+.+++.+.+..... ......|+......++++.+.+++.+.+++++++|++++| ++++.+
T Consensus 26 ~~i~l~~~~~~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~~sG-t~a~~~ 102 (417)
T 3n0l_A 26 EGLEMIASENF--TLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQPNSG-SQANQG 102 (417)
T ss_dssp HSEECCTTCCC--CCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSH-HHHHHH
T ss_pred cCeeeecccCC--CCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCcceEeccH-HHHHHH
Confidence 35888766643 488899998887743210 0111123333334556654444544444778888999999 688886
Q ss_pred -HHHhcCCCCEEEEeCCCChhhhh---hHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----C-CCccEEEE
Q 045431 142 -LQIVFGSNVTMAVQDPSYPAYVD---SSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----V-ARTDIIFF 211 (433)
Q Consensus 142 -l~~l~~~gd~Vl~~~p~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~i~l 211 (433)
+..++++||+|++++|+|+++.. .....|.. ..++.++.+. ++..+++. . .++++|++
T Consensus 103 ~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~v~~ 170 (417)
T 3n0l_A 103 VYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKM----------YESCFYGVEL--DGRIDYEKVREIAKKEKPKLIVC 170 (417)
T ss_dssp HHHHHSCTTCEEEEECC----------------CC----------SEEEEECCCT--TSSCCHHHHHHHHHHHCCSEEEE
T ss_pred HHHHhcCCCCEEEecccccccccchhhhhhhhcce----------eeeEeccCCC--CCCcCHHHHHHHHHhcCCeEEEE
Confidence 67789999999999999987654 22223311 2455555552 22233221 1 47899888
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCCEEEEecccc-ccccCCCCCcccccCCCCcceEEEecccccccccccceeeee
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYA-LYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTV 290 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~ 290 (433)
++|+| |.+++ +++|.++|++||++||+||+|+ +..+.+..... + .+..++++|+||++ +|+|.||++
T Consensus 171 ~~~~~--G~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~--~---~~~di~~~s~sK~l--~g~~~G~~~ 238 (417)
T 3n0l_A 171 GASAY--ARVID---FAKFREIADEIGAYLFADIAHIAGLVVAGEHPSP--F---PYAHVVSSTTHKTL--RGPRGGIIM 238 (417)
T ss_dssp CCSSC--CSCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCC--T---TTCSEEEEESSTTT--CSCSCEEEE
T ss_pred CCccc--CccCC---HHHHHHHHHHcCCEEEEECccchhhhhcccCCCc--c---ccceEEEeeCcccc--CCCCeeEEE
Confidence 88876 88888 8899999999999999999974 34343321111 1 12348899999987 788999999
Q ss_pred cc-ccccccCCcchhHHHHHHHhhccC-CCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeec-CC
Q 045431 291 IP-KELLFSDGFPVAKDFNRIVCTCFN-GASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYG-GK 367 (433)
Q Consensus 291 ~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~-~~ 367 (433)
++ ++++ +.+......... +++...+.++..++......++++.+++++++++.+.+.|++.|+.+.. +.
T Consensus 239 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 310 (417)
T 3n0l_A 239 TNDEELA--------KKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDRKFKLVSDGT 310 (417)
T ss_dssp ESCHHHH--------HHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSC
T ss_pred ECCHHHH--------HHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCceeccCCC
Confidence 98 4553 555554433322 2334444444444432222456788889999999999999988888764 34
Q ss_pred CccEEEEECCC-CChHHHHHHHHHcCCeEecCCCCCC----CCCCCeEEEeec------cChhHHHHHHHHHHHhh
Q 045431 368 NAPYVWVQFPG-RSSWDVFSEILEKTHVVTTPGSGFG----PGGEGFIRVSAF------GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 368 ~g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~----~~~~~~iRi~~~------~~~~~l~~~l~~l~~~l 432 (433)
.+.++|+.+++ ....+.+..+++++||.+.++..+. +.....+|+++. .+++++++++++|++++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l 386 (417)
T 3n0l_A 311 DNHLVLMSFLDREFSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADIL 386 (417)
T ss_dssp SSSEEEEECTTSSSCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CceEEEEEcccCCCCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHH
Confidence 56789999863 2233444455566799998765332 122467999952 35899999999999876
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.4e-28 Score=235.83 Aligned_cols=338 Identities=13% Similarity=0.086 Sum_probs=209.1
Q ss_pred CCCCceEEecCCCC--CCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChH
Q 045431 60 YPDAEVISLGIGDT--TEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAK 136 (433)
Q Consensus 60 ~~~~~~i~l~~g~~--~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~ 136 (433)
.++...|||+.+.+ .+. .++.+.+++.+++.+. ....| +.....++++.+++++ + .+++|++++|++
T Consensus 53 ~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~----~~~~~-~~~~~~~l~~~la~~~----~-~~~~v~~~~sgs 122 (434)
T 2epj_A 53 VDGARIVDLVLAYGPLILGHKHPRVLEAVEEALARG----WLYGA-PGEAEVLLAEKILGYV----K-RGGMIRFVNSGT 122 (434)
T ss_dssp TTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTC----SCCSS-CCHHHHHHHHHHHHHH----C-TTCEEEEESSHH
T ss_pred CCCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhC----CCCCC-CCHHHHHHHHHHHHhC----C-CCCEEEEeCCHH
Confidence 45667899988753 232 6899999999998752 11233 2223344555555543 4 578999999999
Q ss_pred HHHHHH-HH--hcCCCCEEEEeCCCChhhhhhHH-HhCCcc-cc---cccccc---cceEEEeecCccCCcccCCCCC-C
Q 045431 137 CDISRL-QI--VFGSNVTMAVQDPSYPAYVDSSV-IMGQTG-EF---QKDAEK---YGKIEYMRCTAENGFFPDLSTV-A 204 (433)
Q Consensus 137 ~al~~l-~~--l~~~gd~Vl~~~p~~~~~~~~~~-~~g~~~-~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~ 204 (433)
+++.++ .. .+.+++.|++.+|+|+++..... ..+... .+ ...+.. ...+..++.++...+...+... +
T Consensus 123 eA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 202 (434)
T 2epj_A 123 EATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYNDVEALERVFAEYGD 202 (434)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEETTCHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCCCCHHHHHHHHHhCCC
Confidence 999874 33 14456788888999988654322 111000 00 000000 0124444432111111011111 2
Q ss_pred CccEEEEcCC-CCccccCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccc
Q 045431 205 RTDIIFFCSP-NNPTGAAA-TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFT 282 (433)
Q Consensus 205 ~~~~i~l~~p-~nPtG~~~-~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~ 282 (433)
++++ ++++| +||||.++ +.+++++|.++|++||+++|+||+|+++ ..+.......+...+| +.||||.++ +
T Consensus 203 ~~~~-vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~d----i~s~sK~l~-~ 275 (434)
T 2epj_A 203 RIAG-VIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLEGAQGYFNIEGD----IIVLGKIIG-G 275 (434)
T ss_dssp GEEE-EEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSSTTHHHHHHTCCCS----EEEEEGGGG-T
T ss_pred CEEE-EEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCCcchhhHHhCCCCC----eeeecchhc-C
Confidence 4555 45566 57799876 7999999999999999999999999977 3332221112221223 349999998 6
Q ss_pred ccceeeeeccccccccCCcchhHHHHH---HHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc
Q 045431 283 GVRLGWTVIPKELLFSDGFPVAKDFNR---IVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 283 G~r~G~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 359 (433)
|+|+||++++++++ +.+.. .....+.+.++++++++.++++.... +++.++++++++++.+.|+++
T Consensus 276 G~~~G~v~~~~~~~--------~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~~ 344 (434)
T 2epj_A 276 GFPVGAVAGSREVM--------SLLTPQGKVFNAGTFNAHPITMAAGLATLKALEE---EPVYSVSREAAKALEEAASEV 344 (434)
T ss_dssp TSSCEEEEECHHHH--------TTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHH
T ss_pred CcceeeeeecHHHH--------HhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHH
Confidence 99999999998775 22221 11223445788888888877752211 345566777777777777653
Q ss_pred ----CCeeecCCCccEEEEECCCC--------------ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHH
Q 045431 360 ----GFKVYGGKNAPYVWVQFPGR--------------SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNV 421 (433)
Q Consensus 360 ----g~~~~~~~~g~~~~~~~~~~--------------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l 421 (433)
++....+..|.++|+.++.. ...++...+++ +||.+.||.. .++|+++..+++++
T Consensus 345 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~------~~~~~~~~~t~e~i 417 (434)
T 2epj_A 345 LDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLR-RGVFIAPSNL------EAVFTGLPHQGEAL 417 (434)
T ss_dssp HHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHH-TTEECCSSTT------SCEECCTTCSHHHH
T ss_pred HhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHH-CCeEEeccCC------CcEEEeccCCHHHH
Confidence 55322223678899998741 13456666654 5999998742 35788887899999
Q ss_pred HHHHHHHHHhh
Q 045431 422 LEACKRFKHLY 432 (433)
Q Consensus 422 ~~~l~~l~~~l 432 (433)
++++++|++++
T Consensus 418 ~~~l~~l~~~l 428 (434)
T 2epj_A 418 EIAVEGLRSSL 428 (434)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998875
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=229.16 Aligned_cols=340 Identities=14% Similarity=0.117 Sum_probs=223.0
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhccc--CCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCC----cEEEcCChHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALST--QEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEG----DIFVSDGAKC 137 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~----~i~~~~G~~~ 137 (433)
+.|+|..+++ +.|+.+.+++.+.+.+... ..+...|+...+..++++.+.+++.+.++++++ +|++++|+ +
T Consensus 45 ~~i~L~a~e~--~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs-~ 121 (483)
T 1rv3_A 45 VGLELIASEN--FASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGS-P 121 (483)
T ss_dssp SSEECCTTCC--CCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH-H
T ss_pred cCeEEEcCCC--CCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcH-H
Confidence 4799977765 4788999999888764210 011112443445577887777777776677764 49999999 6
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCChhhhhhH--------HHhCCcccccccccccceEEEeecCccCCcccCCCC-----C
Q 045431 138 DISR-LQIVFGSNVTMAVQDPSYPAYVDSS--------VIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----V 203 (433)
Q Consensus 138 al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 203 (433)
++.+ +.++++|||+|++++|+|.++.... ...|.. ...+.++++++ ++..+++. .
T Consensus 122 an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~----------~~~v~~~~~~~-~~~iD~d~le~~i~ 190 (483)
T 1rv3_A 122 ANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIF----------FESMAYKVNPD-TGYIDYDRLEENAR 190 (483)
T ss_dssp HHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHH----------SEEEEECBCTT-TCSBCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccce----------EEEEECccccC-CCcCCHHHHHHHHh
Confidence 6665 7888999999999999998875422 222210 13444444533 23334322 2
Q ss_pred -CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccc-cccCCC-CCcccccCCCCcceEEEeccccccc
Q 045431 204 -ARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYAL-YISDDN-PRSIFEIPGAKEVAIETSSFSKYAG 280 (433)
Q Consensus 204 -~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~-~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~ 280 (433)
+++++|++ +++||+ .+++ +++|.++|++||+++|+|++|+. +...+. +.++ +. ..+++.|+||++
T Consensus 191 ~~~tklIi~-~~sn~~-~~~d---l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~---~~---~div~~s~~K~l- 258 (483)
T 1rv3_A 191 LFHPKLIIA-GTSCYS-RNLD---YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPF---EH---CHVVTTTTHKTL- 258 (483)
T ss_dssp HHCCSEEEE-CCSSCC-SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGG---GT---CSEEEEESSGGG-
T ss_pred hcCCcEEEE-eCCcCC-CcCC---HHHHHHHHHHcCCEEEEEccchhcccccCCCCCCC---CC---CcEEEecCcccC-
Confidence 57899888 899988 7777 78999999999999999999873 333332 2222 11 238899999987
Q ss_pred ccccceeeeeccccccccCC-------cchhHHHHHHHhhc-cCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHH
Q 045431 281 FTGVRLGWTVIPKELLFSDG-------FPVAKDFNRIVCTC-FNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDII 352 (433)
Q Consensus 281 ~~G~r~G~l~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 352 (433)
+|+|.||++++++++.... ..+...+....... ..+++.....+...++......++++..+++.++++++
T Consensus 259 -~GprgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l 337 (483)
T 1rv3_A 259 -RGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRAL 337 (483)
T ss_dssp -CCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred -CCCCceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 6889999999987531000 01123333222111 12233333333333443222235688889999999999
Q ss_pred HHHHhhcCCeeecCC-CccEEEEECC--CCChHHHHHHHHHcCCeEec----CCCCCCCCCCCeEEEeecc--C----hh
Q 045431 353 VETFNSLGFKVYGGK-NAPYVWVQFP--GRSSWDVFSEILEKTHVVTT----PGSGFGPGGEGFIRVSAFG--H----RG 419 (433)
Q Consensus 353 ~~~l~~~g~~~~~~~-~g~~~~~~~~--~~~~~~~~~~l~~~~gi~v~----~g~~f~~~~~~~iRi~~~~--~----~~ 419 (433)
.+.|.+.|+.+..+. ...++|+++. +.+..++. .++++.||.+. ||..+ +.+++++||++.. + ++
T Consensus 338 ~~~L~~~g~~~~~~~~~~~~~~v~~~~~g~~~~~~~-~~L~~~gI~v~~~~~pg~~~-~~~~~~iRis~~~~~t~g~~~e 415 (483)
T 1rv3_A 338 SAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAE-KVLEACSIACNKNTCPGDKS-ALRPSGLRLGTPALTSRGLLEK 415 (483)
T ss_dssp HHHHHHTTCEEGGGSCSSSEEEEEGGGGTCCHHHHH-HHHHHTTEECEEECCSSCSC-TTSCCEEEEECHHHHHTTCCHH
T ss_pred HHHHHhcCCEeccCCCCCceEEEeccCCCCCHHHHH-HHHHhCCcEEecCCCCCCCc-CCCCceEEeecCCcccCCCCHH
Confidence 999999899887653 3467899986 34555554 45566799999 88742 2346799999743 5 89
Q ss_pred HHHHHHHHHHHhh
Q 045431 420 NVLEACKRFKHLY 432 (433)
Q Consensus 420 ~l~~~l~~l~~~l 432 (433)
++++++++|++++
T Consensus 416 di~~~~~~l~~~l 428 (483)
T 1rv3_A 416 DFQKVAHFIHRGI 428 (483)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998875
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.4e-27 Score=226.21 Aligned_cols=313 Identities=15% Similarity=0.077 Sum_probs=217.8
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-H
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-L 142 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l 142 (433)
++|||+.+.+++ ++.+.+++.+.+.. ..|.+..+..++++++++++ +.+ ++++++|+++++.+ +
T Consensus 31 ~~id~~~~~~~~--~~~v~~a~~~~~~~-------~~y~~~~~~~~l~~~la~~~----~~~--~~v~~~~Gt~a~~~~l 95 (399)
T 2oga_A 31 PFLDLKAAYEEL--RAETDAAIARVLDS-------GRYLLGPELEGFEAEFAAYC----ETD--HAVGVNSGMDALQLAL 95 (399)
T ss_dssp CSCCHHHHHHHT--HHHHHHHHHHHHHH-------TCCSSSHHHHHHHHHHHHHT----TSS--EEEEESCHHHHHHHHH
T ss_pred cccccCcCCCCC--CHHHHHHHHHHHhc-------CCCCCchhHHHHHHHHHHHH----CCC--eEEEecCHHHHHHHHH
Confidence 578999888754 48888899888753 14655678899999999997 543 56667777899887 5
Q ss_pred HHh-cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEEcCCCC
Q 045431 143 QIV-FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFFCSPNN 216 (433)
Q Consensus 143 ~~l-~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~~p~n 216 (433)
..+ +++||+|++++|+|+++...++..| .+++.++.+++ ++..+++. .+++++|+ |+|
T Consensus 96 ~~~~~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~v~---~~n 159 (399)
T 2oga_A 96 RGLGIGPGDEVIVPSHTYIASWLAVSATG------------ATPVPVEPHED-HPTLDPLLVEKAITPRTRALL---PVH 159 (399)
T ss_dssp HHTTCCTTCEEEEESSSCTHHHHHHHHTT------------CEEEEECBCSS-SSSBCHHHHHHHCCTTEEEEC---CBC
T ss_pred HHhCCCCcCEEEECCCccHHHHHHHHHCC------------CEEEEEecCCC-CCCcCHHHHHHhcCCCCeEEE---EeC
Confidence 677 7999999999999999999888888 47788887642 22223221 24677665 578
Q ss_pred ccccCCCHHHHHHHHHHHHHcCCEEEEeccccccc-cCCCCCcccccCCCCcceEEEecc--cccccccccceeeeecc-
Q 045431 217 PTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYI-SDDNPRSIFEIPGAKEVAIETSSF--SKYAGFTGVRLGWTVIP- 292 (433)
Q Consensus 217 PtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~-~~~~~~~~~~~~~~~~~vi~i~S~--sK~~~~~G~r~G~l~~~- 292 (433)
|||.+.+ +++|.++|+++|+++|+|++|+.+. +++ ..+..+ . .+++.|+ ||.+|.+| |.||++++
T Consensus 160 ~tG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~--~~~~~~---~--di~~~S~~~sK~~~~~G-~~g~~~~~~ 228 (399)
T 2oga_A 160 LYGHPAD---MDALRELADRHGLHIVEDAAQAHGARYRG--RRIGAG---S--SVAAFSFYPGKNLGCFG-DGGAVVTGD 228 (399)
T ss_dssp GGGCCCC---HHHHHHHHHHHTCEECEECTTCTTCEETT--EETTCT---T--CEEEEECCTTSSSCCSS-CCEEEEESC
T ss_pred CcCCccC---HHHHHHHHHHcCCEEEEECcccccCccCC--eecccc---c--CEEEEeCCCCccCCcCC-ceEEEEeCC
Confidence 9999887 7899999999999999999998653 322 112111 2 3788888 79998668 99999987
Q ss_pred ccccccCCcchhHHHHHHHhhc------------cCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-
Q 045431 293 KELLFSDGFPVAKDFNRIVCTC------------FNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL- 359 (433)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 359 (433)
++++ +.+....... ....+.+.+.++.+.++ +++...++.+++++++.+.|+++
T Consensus 229 ~~~~--------~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~-----~~~~~~~~~~~~~~~l~~~L~~~~ 295 (399)
T 2oga_A 229 PELA--------ERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLA-----HLDSWNGRRSALAAEYLSGLAGLP 295 (399)
T ss_dssp HHHH--------HHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHH-----THHHHHHHHHHHHHHHHHHTTTCT
T ss_pred HHHH--------HHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhccCC
Confidence 5553 4454433221 12345666665555553 23455666677788888889887
Q ss_pred CCeee-cCCCccEEEE--ECCCCChHHHHHHHHHcCCeEecCCCCCCCC--------C-------------CCeEEEee-
Q 045431 360 GFKVY-GGKNAPYVWV--QFPGRSSWDVFSEILEKTHVVTTPGSGFGPG--------G-------------EGFIRVSA- 414 (433)
Q Consensus 360 g~~~~-~~~~g~~~~~--~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~--------~-------------~~~iRi~~- 414 (433)
|+.+. .+..+.++|+ .+...+..++...|.+ +||.+.++...... + .+++||++
T Consensus 296 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~ 374 (399)
T 2oga_A 296 GIGLPVTAPDTDPVWHLFTVRTERRDELRSHLDA-RGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIG 374 (399)
T ss_dssp TCBCCCCCTTEECCCSSEEEECSSHHHHHHHHHH-TTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCS
T ss_pred CccccCCCCCCcceeEEEEEECCCHHHHHHHHHH-CCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCC
Confidence 77664 2445565653 3333355666666655 59999875421000 0 25799996
Q ss_pred -ccChhHHHHHHHHHHHhh
Q 045431 415 -FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 415 -~~~~~~l~~~l~~l~~~l 432 (433)
..++++++++++.|++++
T Consensus 375 ~~~t~edi~~~~~~l~~~~ 393 (399)
T 2oga_A 375 PHLERPQALRVIDAVREWA 393 (399)
T ss_dssp TTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 458999999999998875
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=224.79 Aligned_cols=330 Identities=11% Similarity=0.069 Sum_probs=211.7
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHh-hcccCCCCC-CCCCCCCCHHHH----HHHHHHHhccCCCCCCcEEEcCChHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSY-ALSTQEGYS-GYGAEQGEKPLR----AAIASTFYKDLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~-~~~~~~~~~-~Y~~~~g~~~lr----~~la~~l~~~~~~~~~~i~~~~G~~~ 137 (433)
.+++++.+.+ .|+.+.+++.+.+. ......... .|.......+++ +.+++++ ++++++|++++| ++
T Consensus 25 ~~~~~~~~~~---~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~----g~~~~~i~~~sG-t~ 96 (405)
T 2vi8_A 25 KIELIASENF---VSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLF----GAEHANVQPHSG-AQ 96 (405)
T ss_dssp SEECCTTCCC---CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH----TCSEEECCCSSH-HH
T ss_pred ceeeccCccc---CCHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHh----CCCceEEEecCc-HH
Confidence 4667755543 38999999988874 211000001 121112234555 4666665 777666667777 88
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCChhhhhh---HHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CC-Ccc
Q 045431 138 DISR-LQIVFGSNVTMAVQDPSYPAYVDS---SVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VA-RTD 207 (433)
Q Consensus 138 al~~-l~~l~~~gd~Vl~~~p~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~ 207 (433)
++.+ +..++++||+|++++|+|+.+... ....|. + ..++.++.+++ ++..+++. .. +++
T Consensus 97 a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~-~---------~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~ 165 (405)
T 2vi8_A 97 ANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGV-Q---------YNFVAYGVDPE-THVIDYDDVREKARLHRPK 165 (405)
T ss_dssp HHHHHHHHHCCTTCEEEEECGGGTCCTTTTCTTSHHHH-H---------SEEEEECBCTT-TCSBCHHHHHHHHHHHCCS
T ss_pred HHHHHHHHhcCCCCEEEEecccccchhcccchhhhccc-e---------eEEEecccccc-cCCcCHHHHHHHHHhcCCe
Confidence 8886 677789999999999999887531 122331 0 24556665422 22233221 12 678
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccc-ccccce
Q 045431 208 IIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAG-FTGVRL 286 (433)
Q Consensus 208 ~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~-~~G~r~ 286 (433)
+|++ +|+|+ |...+ +++|.++|++||+++|+||+|+.......... ..+.. .+ ++++|+||+++ ++|
T Consensus 166 ~v~~-~~~~~-~~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~-~~~~~-~d--i~~~s~sK~~~g~~g--- 233 (405)
T 2vi8_A 166 LIVA-AAAAY-PRIID---FAKFREIADEVGAYLMVDMAHIAGLVAAGLHP-NPVPY-AH--FVTTTTHKTLRGPRG--- 233 (405)
T ss_dssp EEEE-CCSSC-CSCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSC-CSTTT-CS--EEEEESSSTTCCCSC---
T ss_pred EEEE-eCCCC-CccCC---HHHHHHHHHHcCCEEEEEccccccccccCcCC-Ccccc-CC--EEEEeccccCCCCCC---
Confidence 7776 55553 44444 79999999999999999999994322211111 11211 23 88999999996 445
Q ss_pred eeeeccccccccCCcchhHHHHHHHhhccCCC-cHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeec
Q 045431 287 GWTVIPKELLFSDGFPVAKDFNRIVCTCFNGA-SNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYG 365 (433)
Q Consensus 287 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~ 365 (433)
||++++++++ +.+.........+. +.....++.++++.....++++++++++++++++.+.|+++|+.+..
T Consensus 234 G~~~~~~~~~--------~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 305 (405)
T 2vi8_A 234 GMILCQEQFA--------KQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTLVS 305 (405)
T ss_dssp EEEEECHHHH--------HHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGG
T ss_pred eEEEEcHHHH--------HHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCeEec
Confidence 9999997764 55554432222233 34444433455542212467889999999999999999988888876
Q ss_pred C-CCccEEEEECC--CCChHHHHHHHHHcCCeEecCCCC----CCCCCCCeEEEeec------cChhHHHHHHHHHHHhh
Q 045431 366 G-KNAPYVWVQFP--GRSSWDVFSEILEKTHVVTTPGSG----FGPGGEGFIRVSAF------GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 366 ~-~~g~~~~~~~~--~~~~~~~~~~l~~~~gi~v~~g~~----f~~~~~~~iRi~~~------~~~~~l~~~l~~l~~~l 432 (433)
+ ..++++|+.++ +.+..++...+ .++||.+.+|.. +++..++++|+++. .+++++++++++|++++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~ 384 (405)
T 2vi8_A 306 GGTDNHLLLVDLRPQQLTGKTAEKVL-DEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVL 384 (405)
T ss_dssp GSCSSSEEEEECGGGTCCHHHHHHHH-HHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEEccCCCCCHHHHHHHH-HHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHH
Confidence 4 46889999997 33555666555 556999999863 33334578999975 37999999999999876
Q ss_pred C
Q 045431 433 K 433 (433)
Q Consensus 433 ~ 433 (433)
+
T Consensus 385 ~ 385 (405)
T 2vi8_A 385 K 385 (405)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-26 Score=226.57 Aligned_cols=336 Identities=13% Similarity=0.084 Sum_probs=198.9
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhc-ccCCCCCCCCCCCCCHHHHHHHH-HHHhccCCCCCCcEEEcCChHHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYAL-STQEGYSGYGAEQGEKPLRAAIA-STFYKDLGIEEGDIFVSDGAKCDISR 141 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~Y~~~~g~~~lr~~la-~~l~~~~~~~~~~i~~~~G~~~al~~ 141 (433)
..+++..+.+. .++.+.+++.+.+.+. ........|.......++.+.++ +++.+.++++... ++++|+++++.+
T Consensus 33 ~~i~l~~~~~~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-v~~~~Gs~a~~~ 109 (425)
T 3ecd_A 33 SQVELIASENI--VSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAGHAN-VQPHSGAQANGA 109 (425)
T ss_dssp HSEECCTTCCC--CCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCSEEE-CCCSSHHHHHHH
T ss_pred cceeeecccCC--CCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCCCce-eecCchHHHHHH
Confidence 36888776653 3899999998877421 10001112212122222333333 3333333655433 346677778876
Q ss_pred -HHHhcCCCCEEEEeCCCChhhh-hhH--HHhCCcccccccccccceEEEeecCccCCcccCCCC------CCCccEEEE
Q 045431 142 -LQIVFGSNVTMAVQDPSYPAYV-DSS--VIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST------VARTDIIFF 211 (433)
Q Consensus 142 -l~~l~~~gd~Vl~~~p~~~~~~-~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~l 211 (433)
+..++++||+|++++|+|++.. ... ...|.. ...+.++.+++ .+..+++. ..++++|++
T Consensus 110 al~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~v~~ 178 (425)
T 3ecd_A 110 VMLALAKPGDTVLGMSLDAGGHLTHGAKPALSGKW----------FNALQYGVSRD-TMLIDYDQVEALAQQHKPSLIIA 178 (425)
T ss_dssp HHHHHCCTTCEEEEECC----------------------------CEEEEECCCTT-TSSCCHHHHHHHHHHHCCSEEEE
T ss_pred HHHHccCCCCEEEEcccccccceecchhhhhcccc----------eeeeecCCCcc-cCccCHHHHHHHHhhcCCcEEEE
Confidence 6778899999999999998722 221 123311 24455555432 22233221 147899999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccc-cccCCCCCcccccCCCCcceEEEecccccccccccceeeee
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYAL-YISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTV 290 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~ 290 (433)
++|+||+ ..+ +++|.++|++||++||+||+|+. +.+.+...+... . ..++++|+||++ +|+|.||++
T Consensus 179 ~~~~~~~--~~~---l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~--~---~di~~~s~sK~l--~g~~~g~~~ 246 (425)
T 3ecd_A 179 GFSAYPR--KLD---FARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVE--H---AHVVTSTTHKTL--RGPRGGFVL 246 (425)
T ss_dssp ECSCCCS--CCC---HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG--T---CSEEEEESSGGG--CCCSCEEEE
T ss_pred ccccCCC--cCC---HHHHHHHHHHcCCEEEEECcChHhhhhcccccCchh--c---CcEEEecCCccc--CCCCcEEEE
Confidence 9999964 333 78999999999999999999653 334433222211 1 128899999988 678999999
Q ss_pred ccccccccCCcchhHHHHHHHhhccC-CCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecC-CC
Q 045431 291 IPKELLFSDGFPVAKDFNRIVCTCFN-GASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGG-KN 368 (433)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~ 368 (433)
++++.+ .+.+......... +++...+.++..++.....+++++.+++++++++.+.+.|++.|+.+..+ ..
T Consensus 247 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 319 (425)
T 3ecd_A 247 TNDEEI-------AKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAGGVDLVTGGTD 319 (425)
T ss_dssp ESCHHH-------HHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCS
T ss_pred eCCHHH-------HHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCC
Confidence 986443 2444443322222 23333333333333322224567888999999999999999989888753 46
Q ss_pred ccEEEEECCC-CChHHHHHHHHHcCCeEec----CCCCCCCCCCCeEEEeec--c----ChhHHHHHHHHHHHhh
Q 045431 369 APYVWVQFPG-RSSWDVFSEILEKTHVVTT----PGSGFGPGGEGFIRVSAF--G----HRGNVLEACKRFKHLY 432 (433)
Q Consensus 369 g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~----~g~~f~~~~~~~iRi~~~--~----~~~~l~~~l~~l~~~l 432 (433)
++++|+.++. ....+.+..+++++||.+. ||..+.+...+++|+++. . ++++++++++.|++++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l 394 (425)
T 3ecd_A 320 NHLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVF 394 (425)
T ss_dssp SSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHHH
Confidence 7889999862 2233444455566799999 554443444578999942 2 4899999999998875
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-27 Score=234.15 Aligned_cols=343 Identities=9% Similarity=0.055 Sum_probs=220.6
Q ss_pred cCCCCceEEecCC--CCCC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCCh
Q 045431 59 KYPDAEVISLGIG--DTTE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGA 135 (433)
Q Consensus 59 ~~~~~~~i~l~~g--~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~ 135 (433)
..+++..|||..| ...+ ..++.+.+++.+++.+... .|....+..+.+.++++.+.+..+.+.++|++++|+
T Consensus 51 d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~-----~~~~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sG 125 (472)
T 3hmu_A 51 DSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPY-----YNTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGG 125 (472)
T ss_dssp ETTCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSC-----CCSSSSEECHHHHHHHHHHHHHSCTTEEEEEEESSH
T ss_pred ECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccc-----cccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCH
Confidence 3456788999877 3333 3689999999999976431 222223344566666666655446677899999999
Q ss_pred HHHHHH-HHHhcC--------CCCEEEEeCCCChhhhhhHHHhCCcccc-cccccccceEEEeecCc--c-CCc------
Q 045431 136 KCDISR-LQIVFG--------SNVTMAVQDPSYPAYVDSSVIMGQTGEF-QKDAEKYGKIEYMRCTA--E-NGF------ 196 (433)
Q Consensus 136 ~~al~~-l~~l~~--------~gd~Vl~~~p~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~--~-~~~------ 196 (433)
++++.. +..+.. +++.|++.+|+|+++......++....+ ..++ ....+..++... . +++
T Consensus 126 seA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~-~~~~~~~v~~p~~~~~~~~~~~~~~ 204 (472)
T 3hmu_A 126 SEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSG-LIPDVHHINQPNWWAEGGDMDPEEF 204 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTC-CCSSEEEECCCCHHHHCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccC-CCCCcEEeCCCccccCCcccCHHHH
Confidence 999987 444432 4689999999999987666655532211 1111 112344444221 0 000
Q ss_pred ----ccCCCC-----C-CCccEEEEcCC-CCccccCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCC
Q 045431 197 ----FPDLST-----V-ARTDIIFFCSP-NNPTGAAA-TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPG 264 (433)
Q Consensus 197 ----~~~~~~-----~-~~~~~i~l~~p-~nPtG~~~-~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 264 (433)
..++++ . +++.+ ++++| +|++|.+. +.+.+++|.++|++||+++|+||+|.+|...+.......+..
T Consensus 205 ~~~~~~~le~~i~~~~~~~~aa-vi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v 283 (472)
T 3hmu_A 205 GLARARELEEAILELGENRVAA-FIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGI 283 (472)
T ss_dssp HHHHHHHHHHHHHHHCGGGEEE-EEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCCCEEE-EEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCccchhHHhCC
Confidence 111221 1 23444 55555 66777655 889999999999999999999999998866654332222322
Q ss_pred CCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHH--HHhhccCCCcHHHHHHHHHhcCcCChhHHHHHH
Q 045431 265 AKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNR--IVCTCFNGASNISQAGGLACLSPEGFKAVHEVI 342 (433)
Q Consensus 265 ~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~ 342 (433)
.+| ++ +|||.++.+|+|+||++++++++ +.+.. +....+.+.++++++++.++|+.... +.+.
T Consensus 284 ~pd-i~---t~sK~l~gg~~plG~v~~~~~i~--------~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~---~~~~ 348 (472)
T 3hmu_A 284 RPH-IM---TIAKGLSSGYAPIGGSIVCDEVA--------HVIGKDEFNHGYTYSGHPVAAAVALENLRILEE---ENIL 348 (472)
T ss_dssp CCS-EE---EECGGGTTTSSCCEEEEEEHHHH--------HHHTTSCBCCCCTTTTCHHHHHHHHHHHHHHHH---TTHH
T ss_pred CCc-ee---eechhhhcCCcceEEEEECHHHH--------HhcccCCccccCCCCCCHHHHHHHHHHHHHHHH---hHHH
Confidence 233 23 68999974449999999998875 44421 12334566789999999988863211 3445
Q ss_pred HHHH-HHHHHHHHHHhhc----CCeeecCCCccEEEEECCCCC-------------hHHHHHHHHHcCCeEecCCCCCCC
Q 045431 343 GFYK-ENTDIIVETFNSL----GFKVYGGKNAPYVWVQFPGRS-------------SWDVFSEILEKTHVVTTPGSGFGP 404 (433)
Q Consensus 343 ~~~~-~~~~~l~~~l~~~----g~~~~~~~~g~~~~~~~~~~~-------------~~~~~~~l~~~~gi~v~~g~~f~~ 404 (433)
++++ ++.+++.+.|+++ .+..+.+ .|.++++.+.... ...+...+++ +||.+.|+.
T Consensus 349 ~~~~~~~~~~l~~~L~~l~~~~~v~~vr~-~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~g---- 422 (472)
T 3hmu_A 349 DHVRNVAAPYLKEKWEALTDHPLVGEAKI-VGMMASIALTPNKASRAKFASEPGTIGYICRERCFA-NNLIMRHVG---- 422 (472)
T ss_dssp HHHHHTHHHHHHHHHHGGGGSTTEEEEEE-ETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHH-TTBCCEEET----
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEEEe-cCceEEEEEecCccccccccchhHHHHHHHHHHHHH-CCcEEEecC----
Confidence 5566 6666776666554 2333333 5677777775211 3455566665 599998852
Q ss_pred CCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 405 GGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 405 ~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
+++||+ +..+++++++++++|++++
T Consensus 423 ---~~iRi~p~~~~t~e~i~~~l~~l~~~l 449 (472)
T 3hmu_A 423 ---DRMIISPPLVITPAEIDEMFVRIRKSL 449 (472)
T ss_dssp ---TEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred ---CEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 789999 6779999999999999875
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=225.33 Aligned_cols=332 Identities=14% Similarity=0.098 Sum_probs=200.1
Q ss_pred eEEecCCCCCCCChHHHHHHHHHHHhhcc-cC-CCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-
Q 045431 65 VISLGIGDTTEPIPEVITSALAKRSYALS-TQ-EGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR- 141 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~- 141 (433)
.+.+..+.+. .++.+.+++.+.+.+.. .. .....|........+.+...+++.+.+++++++|++++| ++++.+
T Consensus 32 ~~~~~~~~n~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v~~~sG-s~a~~~a 108 (420)
T 3gbx_A 32 HIELIASENY--TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQPHSG-SQANFAV 108 (420)
T ss_dssp SEECCTTCCC--CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEECCCSSH-HHHHHHH
T ss_pred ceeeeccCCC--CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCceeEecCc-HHHHHHH
Confidence 4555544432 68999999988874311 00 111122222333444443334444444777888888888 567776
Q ss_pred HHHhcCCCCEEEEeCCCChhhhh---hHHHhCCcccccccccccceEEEeecCccCCcccC-CCC---CCCccEEEEcCC
Q 045431 142 LQIVFGSNVTMAVQDPSYPAYVD---SSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST---VARTDIIFFCSP 214 (433)
Q Consensus 142 l~~l~~~gd~Vl~~~p~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~i~l~~p 214 (433)
+..++++||+|++++|+|+.+.. .....|.. ...+.++.+.+...+.+ +++ ..++++|++++|
T Consensus 109 ~~~~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~ 178 (420)
T 3gbx_A 109 YTALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKL----------YNIVPYGIDESGKIDYDEMAKLAKEHKPKMIIGGFS 178 (420)
T ss_dssp HHHHCCTTCEEEEEEEC------------CHHHH----------SEEEEEEECTTCSCCHHHHHHHHHHHCCSEEEECCT
T ss_pred HHHhcCCCCEEEecchhhcceeccchhhhhcccc----------eeEEeccCCccCCcCHHHHHHHHHhcCCeEEEEecC
Confidence 68889999999999999987431 11122210 13444555432222211 221 125899999899
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccc-cccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccc
Q 045431 215 NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYAL-YISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPK 293 (433)
Q Consensus 215 ~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~ 293 (433)
+||+ ..+ +++|.++|++||++||+||+|+. +...+..... +. ...++++|+||+++ |.+.||+++++
T Consensus 179 ~~~~--~~~---l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~--~~---~~di~~~s~sK~~~--g~~gg~~~~~~ 246 (420)
T 3gbx_A 179 AYSG--VVD---WAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNP--VP---HAHVVTTTTHKTLA--GPRGGLILAKG 246 (420)
T ss_dssp TCCS--CCC---HHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCS--TT---TSSEEEEESSGGGC--SCSCEEEEESS
T ss_pred ccCC--ccC---HHHHHHHHHHcCCEEEEECCcchhceecccCCcc--cc---cCCEEEeecccCCC--CCCceEEEEcC
Confidence 9974 455 88999999999999999999864 3333322211 11 13388999999984 55669999988
Q ss_pred ---cccccCCcchhHHHHHHHhhccC-CCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecC-CC
Q 045431 294 ---ELLFSDGFPVAKDFNRIVCTCFN-GASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGG-KN 368 (433)
Q Consensus 294 ---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~ 368 (433)
.+. +.+......... +++...+.++..++......++++++++++++++.+.+.|++.|+.+..+ ..
T Consensus 247 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 318 (420)
T 3gbx_A 247 GDEELY--------KKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNRGYKVVSGGTE 318 (420)
T ss_dssp CCHHHH--------HHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCS
T ss_pred CcHHHH--------HHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCeeccCCCC
Confidence 442 444433322222 23344444333333322235668889999999999999999989888653 56
Q ss_pred ccEEEEECCC-CChHHHHHHHHHcCCeEecC-------CCCCCCCCCCeEEEeec------cChhHHHHHHHHHHHhh
Q 045431 369 APYVWVQFPG-RSSWDVFSEILEKTHVVTTP-------GSGFGPGGEGFIRVSAF------GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 369 g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~-------g~~f~~~~~~~iRi~~~------~~~~~l~~~l~~l~~~l 432 (433)
++++|+.++. ....+.+..+++++||.+.| |..|+ .+.+||++. .++++++++++.|++++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~---~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l 393 (420)
T 3gbx_A 319 NHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFV---TSGIRIGSPAVTRRGFKEAEVKELAGWMCDVL 393 (420)
T ss_dssp SSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCSSCTTT---CSEEEEECHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHCCcEeccccCCCCccccCC---CcceEEecchhcccCCCHHHHHHHHHHHHHHH
Confidence 7899999863 22344445555667999998 33333 345999963 34789999999998875
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=8.9e-26 Score=217.17 Aligned_cols=286 Identities=13% Similarity=0.149 Sum_probs=195.6
Q ss_pred CCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHh-CCccccccccc
Q 045431 103 AEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIM-GQTGEFQKDAE 180 (433)
Q Consensus 103 ~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~ 180 (433)
+..+..+|++++++++ +.+ ++|++++| ++++.+ +..++++||+|++++|+|++....+... ...+
T Consensus 50 ~~~~~~~l~~~la~~~----~~~-~~i~~~sG-t~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g------- 116 (386)
T 1cs1_A 50 GNPTRDVVQRALAELE----GGA-GAVLTNTG-MSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGC------- 116 (386)
T ss_dssp CCHHHHHHHHHHHHHH----TCS-EEEEESSH-HHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTS-------
T ss_pred CCccHHHHHHHHHHHh----CCC-cEEEeCCH-HHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHhcC-------
Confidence 4567789999999998 554 77888777 788887 5677899999999999999865544221 2222
Q ss_pred ccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCccc
Q 045431 181 KYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIF 260 (433)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~ 260 (433)
.+++.++.++.+.+...+ .+++++|++++|+||||.+++ +++|.++|++||+++|+||+|+.+.... ++
T Consensus 117 --~~~~~~~~~d~~~l~~~i--~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~---~~- 185 (386)
T 1cs1_A 117 --YRVLFVDQGDEQALRAAL--AEKPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQN---PL- 185 (386)
T ss_dssp --CEEEEECTTCHHHHHHHH--HTCCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC---GG-
T ss_pred --CEEEEeCCCCHHHHHHhh--ccCCcEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC---cc-
Confidence 367777664211111111 257899999999999999997 8899999999999999999999765431 22
Q ss_pred ccCCCCcceEEEecccccccccccce-eeeeccc-cccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHH
Q 045431 261 EIPGAKEVAIETSSFSKYAGFTGVRL-GWTVIPK-ELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAV 338 (433)
Q Consensus 261 ~~~~~~~~vi~i~S~sK~~~~~G~r~-G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~ 338 (433)
. .+.++++.|+||+++.+|.|+ ||+++++ +++ +.+...........+++.+.++.+.++ ++
T Consensus 186 ~----~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~--------~~l~~~~~~~~~~~~~~~~~~~~~~l~-----~~ 248 (386)
T 1cs1_A 186 A----LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVV--------TELAWWANNIGVTGGAFDSYLLLRGLR-----TL 248 (386)
T ss_dssp G----GTCSEEEEETTTTTTCSSCCCCEEEEESSHHHH--------HHHHHHHHHHTCBCCHHHHHHHHHHHT-----TH
T ss_pred c----cCceEEEEcCcccccCCCCceeEEEEeCcHHHH--------HHHHHHHHhcCCCCCHHHHHHHHhccc-----HH
Confidence 2 234689999999998889887 9999987 553 556555544344467777776666554 23
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-CCeee-cC----------------CCccEEEEECCCCChHHHHHHHHHcCCeEecCCC
Q 045431 339 HEVIGFYKENTDIIVETFNSL-GFKVY-GG----------------KNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGS 400 (433)
Q Consensus 339 ~~~~~~~~~~~~~l~~~l~~~-g~~~~-~~----------------~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~ 400 (433)
....+...++.+.+.+.|+++ .+... .+ ..+.++.+.+++. .. .+...+.+.||.+.+++
T Consensus 249 ~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~l~~~gi~~~~~~ 326 (386)
T 1cs1_A 249 VPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD-EQ-TLRRFLGGLSLFTLAES 326 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC-HH-HHHHHHHTCSSSEEBSC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC-HH-HHHHHHHhCCcceEccc
Confidence 555666777888888888775 22211 11 1366777777643 33 44455566799887421
Q ss_pred CCC-------------------------CCCCCeEEEeecc--ChhHHHHHHHHHHHhh
Q 045431 401 GFG-------------------------PGGEGFIRVSAFG--HRGNVLEACKRFKHLY 432 (433)
Q Consensus 401 ~f~-------------------------~~~~~~iRi~~~~--~~~~l~~~l~~l~~~l 432 (433)
++ ...++++||++.. ++++++.+.+.|+++.
T Consensus 327 -~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~~ 384 (386)
T 1cs1_A 327 -LGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAAN 384 (386)
T ss_dssp -CCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHT
T ss_pred -CCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence 11 0125899999744 4666777777776654
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-26 Score=215.82 Aligned_cols=277 Identities=16% Similarity=0.101 Sum_probs=187.9
Q ss_pred HHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHH----HhCCcccccccccccc
Q 045431 109 PLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSV----IMGQTGEFQKDAEKYG 183 (433)
Q Consensus 109 ~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~----~~g~~~~~~~~~~~~~ 183 (433)
+|++.+++++ +.+ +.|++++| ++++.+ +..++++||+|++++|+|+++...+. ..| .
T Consensus 2 ~l~~~la~~~----g~~-~~i~~~sG-~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g------------~ 63 (331)
T 1pff_A 2 ALEGKIAKLE----HAE-ACAATASG-MGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFG------------V 63 (331)
T ss_dssp HHHHHHHHHH----TCS-EEEEESSH-HHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTT------------C
T ss_pred hHHHHHHHHh----CCC-eEEEeCCh-HHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcC------------C
Confidence 6899999998 665 67777777 788887 56678999999999999999876653 345 3
Q ss_pred eEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHH-cCCEEEEeccccccccCCCCCccccc
Q 045431 184 KIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKD-NGSIIVYDSAYALYISDDNPRSIFEI 262 (433)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~-~~~~li~De~~~~~~~~~~~~~~~~~ 262 (433)
+++.++..+...+...+ .+++++|++++|+||||.+++ +++|.++|++ ||+++|+|++|+.+... .++ .
T Consensus 64 ~~~~~~~~d~~~l~~~i--~~~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~~li~D~a~~~~~~~---~~~-~- 133 (331)
T 1pff_A 64 EVDFIDMAVPGNIEKHL--KPNTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILT---NPL-D- 133 (331)
T ss_dssp EEEEECTTSTTHHHHTC--CTTEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHC---CGG-G-
T ss_pred EEEEeCCCCHHHHHHhh--cCCCeEEEEECCCCCcCcccC---HHHHHHHHhhhcCCEEEEECCCcccccC---Chh-h-
Confidence 66777653211121112 257899999999999999997 8899999999 99999999999865432 122 2
Q ss_pred CCCCcceEEEecccccccccccc-eeeeeccc-cccccCCcchhHHHHHHHhh-ccCCCcHHHHHHHHHhcCcCChhHHH
Q 045431 263 PGAKEVAIETSSFSKYAGFTGVR-LGWTVIPK-ELLFSDGFPVAKDFNRIVCT-CFNGASNISQAGGLACLSPEGFKAVH 339 (433)
Q Consensus 263 ~~~~~~vi~i~S~sK~~~~~G~r-~G~l~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~ 339 (433)
.++++++.|+||+++.+|.| +||+++++ +++ +.+...... .....+.+.+.++...++ .+.
T Consensus 134 ---~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~--------~~l~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~ 197 (331)
T 1pff_A 134 ---LGVDIVVHSATKYINGHTDVVAGLVCSRADIIA--------KVKSQGIKDITGAIISPHDAWLITRGTL-----TLD 197 (331)
T ss_dssp ---GTCSEEEEETTTTTSSSSSCCCEEEEECHHHHH--------HHHHTCCCCCCCCCCCHHHHHHHHHHHH-----HHH
T ss_pred ---cCCcEEEEECccccCCCCCceEEEEEeCcHHHH--------HHHHHHHHhhcCCCCCHHHHHHHHcCcc-----hHH
Confidence 23569999999999989999 79999988 664 555544433 334567777766555543 123
Q ss_pred HHHHHHHHHHHHHHHHHhhc---------------CCeeec---CCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCC
Q 045431 340 EVIGFYKENTDIIVETFNSL---------------GFKVYG---GKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSG 401 (433)
Q Consensus 340 ~~~~~~~~~~~~l~~~l~~~---------------g~~~~~---~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~ 401 (433)
...+...++.+.+.+.+++. ++.+.. ...+.++++.++ +.. .+..+++++||.+++++.
T Consensus 198 ~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~l~~~gI~~~~~s~ 274 (331)
T 1pff_A 198 MRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD--GLE-KAKKVLDNCHVVSLAVSL 274 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS--SHH-HHHHHHHTCSSSEECSSC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC--CHH-HHHHHHHhCCCceeccCC
Confidence 33444555555555555432 122111 124567778876 333 445556677998765531
Q ss_pred CC------------------------CCCCCeEEEeec--cChhHHHHHHHHHHHhh
Q 045431 402 FG------------------------PGGEGFIRVSAF--GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 402 f~------------------------~~~~~~iRi~~~--~~~~~l~~~l~~l~~~l 432 (433)
-+ ...++++|+++. .++++++.+++.|++++
T Consensus 275 g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~~ 331 (331)
T 1pff_A 275 GGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLVL 331 (331)
T ss_dssp CSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC-
T ss_pred CCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHhC
Confidence 10 012579999964 46888999999988753
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.4e-26 Score=220.38 Aligned_cols=281 Identities=14% Similarity=0.153 Sum_probs=190.3
Q ss_pred CCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHH----hCCccccccccc
Q 045431 106 GEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVI----MGQTGEFQKDAE 180 (433)
Q Consensus 106 g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~----~g~~~~~~~~~~ 180 (433)
...+|++.++++. +. +++++++|+++++.+ +..++++||+|++++|+|+++...+.. .|
T Consensus 82 ~~~~l~~~la~~~----g~--~~~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g---------- 145 (414)
T 3ndn_A 82 TVSVFEERLRLIE----GA--PAAFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWG---------- 145 (414)
T ss_dssp HHHHHHHHHHHHH----TC--SEEEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTT----------
T ss_pred HHHHHHHHHHHHH----CC--CcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcC----------
Confidence 3455666666654 43 578888888999987 677889999999999999998766644 66
Q ss_pred ccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCccc
Q 045431 181 KYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIF 260 (433)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~ 260 (433)
.+++.++.++...+...+ .+++++|++++|+||||.+.+ +++|.++|++||+++|+|++|+..... .++
T Consensus 146 --~~~~~v~~~d~~~l~~ai--~~~t~~v~le~p~NptG~~~~---l~~i~~la~~~g~~livDe~~~~~~~~---~~~- 214 (414)
T 3ndn_A 146 --VQTVFVDGDDLSQWERAL--SVPTQAVFFETPSNPMQSLVD---IAAVTELAHAAGAKVVLDNVFATPLLQ---QGF- 214 (414)
T ss_dssp --CEEEEECTTCHHHHHHHT--SSCCSEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHC---CCG-
T ss_pred --cEEEEeCCCCHHHHHHhc--CCCCeEEEEECCCCCCCcccc---HHHHHHHHHHcCCEEEEECCCcccccC---Cch-
Confidence 477778765211111111 357899999999999999987 788999999999999999999843221 112
Q ss_pred ccCCCCcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHH
Q 045431 261 EIPGAKEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVH 339 (433)
Q Consensus 261 ~~~~~~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~ 339 (433)
.. +..+++.|+||.++.+| +++|+++++++.+ .+.+...........++....++...+ +.+.
T Consensus 215 ~~----g~div~~S~sK~l~~~G~~~~G~vv~~~~~~-------~~~l~~~~~~~g~~~~~~~a~~~~~~l-----~~l~ 278 (414)
T 3ndn_A 215 PL----GVDVVVYSGTKHIDGQGRVLGGAILGDREYI-------DGPVQKLMRHTGPAMSAFNAWVLLKGL-----ETLA 278 (414)
T ss_dssp GG----TCSEEEEETTTTTTCSSCCCCEEEEECHHHH-------TTHHHHHHHHHCCCCCHHHHHHHHHHG-----GGHH
T ss_pred hc----CCCeEeccCCccccCCCCceEEEEEECHHHH-------HHHHHHHHHHcCCCCCHHHHHHHHHHH-----HHHH
Confidence 22 23488999999998768 8999999998875 124443333333334555544444333 3346
Q ss_pred HHHHHHHHHHHHHHHHHhhc-CCe-eecCC----------------CccEEEEECCCC-----C-hHHHHHHHHHcCCeE
Q 045431 340 EVIGFYKENTDIIVETFNSL-GFK-VYGGK----------------NAPYVWVQFPGR-----S-SWDVFSEILEKTHVV 395 (433)
Q Consensus 340 ~~~~~~~~~~~~l~~~l~~~-g~~-~~~~~----------------~g~~~~~~~~~~-----~-~~~~~~~l~~~~gi~ 395 (433)
...++..++++.+.+.|+++ ++. +..|. .|.++|+.+++. . ...++.. ++..++.
T Consensus 279 ~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~-l~~~~~~ 357 (414)
T 3ndn_A 279 IRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDK-MRLIDIS 357 (414)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHH-CSSSEEC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHh-CccceEc
Confidence 66677788889999999876 443 22221 477899999753 1 2233333 4455778
Q ss_pred ecCCCCCCC---------------------CCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 396 TTPGSGFGP---------------------GGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 396 v~~g~~f~~---------------------~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+..|..+.. ..++.+|||+.. |+.+.+++.|+++|
T Consensus 358 ~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~--e~~~dli~dl~~al 413 (414)
T 3ndn_A 358 NNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGL--EDTDDLIADIDRAL 413 (414)
T ss_dssp SCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS--SCHHHHHHHHHHHH
T ss_pred CCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCc--CCHHHHHHHHHHhh
Confidence 887875531 236789999754 55556666666655
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-25 Score=212.94 Aligned_cols=314 Identities=13% Similarity=0.108 Sum_probs=210.1
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCC-CCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYG-AEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR- 141 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~-~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~- 141 (433)
++++++.+.|.+ ++.+.+++.+.+.. . .|. +..+..+||+++++++ +.+ ++++++|+++++.+
T Consensus 23 ~~~~l~~~~p~~--~~~~~~a~~~~~~~----~---~~~~~~~~~~~l~~~la~~~----~~~--~~i~~~~gt~al~~~ 87 (391)
T 3dr4_A 23 DLPRISVAAPRL--DGNERDYVLECMDT----T---WISSVGRFIVEFEKAFADYC----GVK--HAIACNNGTTALHLA 87 (391)
T ss_dssp -----CCCCCCC--CSSHHHHHHHHHHH----T---CCSSCSHHHHHHHHHHHHHH----TCS--EEEEESSHHHHHHHH
T ss_pred CCceeccCCCCC--CHHHHHHHHHHHHc----C---CccCCChHHHHHHHHHHHHh----CCC--cEEEeCCHHHHHHHH
Confidence 578899998854 57778888887753 1 243 5678999999999998 543 77888888899887
Q ss_pred HHHh-cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC---CCC--CCCccEEEEcCCC
Q 045431 142 LQIV-FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD---LST--VARTDIIFFCSPN 215 (433)
Q Consensus 142 l~~l-~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~i~l~~p~ 215 (433)
+..+ +++||+|++++|+|+++...+...| .+++.++.++++ +..+ +++ .+++++|+ |+
T Consensus 88 l~~~~~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~-~~~d~~~l~~~~~~~~~~v~---~~ 151 (391)
T 3dr4_A 88 LVAMGIGPGDEVIVPSLTYIASANSVTYCG------------ATPVLVDNDPRT-FNLDAAKLEALITPRTKAIM---PV 151 (391)
T ss_dssp HHHHTCCTTCEEEEESSSCTHHHHHHHHTT------------CEEEEECBCTTT-CSBCGGGSGGGCCTTEEEEC---CB
T ss_pred HHHcCCCCcCEEEECCCchHHHHHHHHHCC------------CEEEEEecCccc-cCcCHHHHHHhcCCCceEEE---EE
Confidence 6777 8999999999999999999999888 478888886432 2222 222 24677666 57
Q ss_pred CccccCCCHHHHHHHHHHHHHcCCEEEEeccccccc-cCCCCCcccccCCCCcceEEEeccc--ccccccccceeeeecc
Q 045431 216 NPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYI-SDDNPRSIFEIPGAKEVAIETSSFS--KYAGFTGVRLGWTVIP 292 (433)
Q Consensus 216 nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~-~~~~~~~~~~~~~~~~~vi~i~S~s--K~~~~~G~r~G~l~~~ 292 (433)
||||...+ +++|.++|++||+++|+|++|+... +.+. +...+ .+ +.+.||| |.++ |.+.|+++++
T Consensus 152 n~tG~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~~~--~~~~~---~d--i~~~S~s~~K~l~--~g~gg~~~~~ 219 (391)
T 3dr4_A 152 HLYGQICD---MDPILEVARRHNLLVIEDAAEAVGATYRGK--KSGSL---GD--CATFSFFGNAIIT--TGEGGMITTN 219 (391)
T ss_dssp CGGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTE--ETTSS---SS--EEEEECBTTSSSC--CBSCEEEEES
T ss_pred CCCCChhh---HHHHHHHHHHcCCEEEEECcccccceECCe--eeccc---CC--EEEEECCCCCcCC--cCCeEEEEEC
Confidence 89999877 7889999999999999999998532 2221 11111 23 6677766 7764 4678999887
Q ss_pred ccccccCCcchhHHHHHHHhhcc--------------CCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhh
Q 045431 293 KELLFSDGFPVAKDFNRIVCTCF--------------NGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNS 358 (433)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 358 (433)
+..+ .+.+........ ...+.+..+ ..... ...+++..++.+++.+.+.+.|++
T Consensus 220 ~~~~-------~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa--~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~ 287 (391)
T 3dr4_A 220 DDDL-------AAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAA--IGLAQ---LERVDEHLAARERVVGWYEQKLAR 287 (391)
T ss_dssp CHHH-------HHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHH--HHHHH---HHTHHHHHHHHHHHHHHHHHHHGG
T ss_pred CHHH-------HHHHHHHHhcCCCCCCcccccccccccCCCHHHHH--HHHHH---HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6643 244443332111 122233322 22222 123466777788888899999988
Q ss_pred cCCeeecC------CCc-cEEEEECCC---CChHHHHHHHHHcCCeEecCCCCC---CCC---------------CCCeE
Q 045431 359 LGFKVYGG------KNA-PYVWVQFPG---RSSWDVFSEILEKTHVVTTPGSGF---GPG---------------GEGFI 410 (433)
Q Consensus 359 ~g~~~~~~------~~g-~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~f---~~~---------------~~~~i 410 (433)
.|+.+..+ ..+ ..+++.++. .+..++...|.++ ||.+.+|... .+. ....+
T Consensus 288 ~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~-GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l 366 (391)
T 3dr4_A 288 LGNRVTKPHVALTGRHVFWMYTVRLGEGLSTTRDQVIKDLDAL-GIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGL 366 (391)
T ss_dssp GTTSEECCCCCTTSCCCCSSEEEEECSSCSSCHHHHHHHHHHT-TCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEE
T ss_pred CCccccCcCCCCCCcceeEEEEEEECCccchhHHHHHHHHHHC-CCceeecCCccccChhhhhcCcCCChHHHHHHhCeE
Confidence 87776544 122 235777763 4566677776554 9999987511 100 13568
Q ss_pred EEee--ccChhHHHHHHHHHHHhhC
Q 045431 411 RVSA--FGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 411 Ri~~--~~~~~~l~~~l~~l~~~l~ 433 (433)
||++ ..+++|++++++.|+++++
T Consensus 367 rl~~~~~~t~edi~~~~~~l~~~l~ 391 (391)
T 3dr4_A 367 NLPTHAGLTEADIDRVIAALDQVLV 391 (391)
T ss_dssp EECCCTTCCHHHHHHHHHHHHTTCC
T ss_pred EccCCCCCCHHHHHHHHHHHHHHhC
Confidence 9996 4589999999999998864
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.9e-26 Score=222.06 Aligned_cols=331 Identities=13% Similarity=0.113 Sum_probs=210.4
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCC---CCCCHHHH--HHHH-HHHhccCCCCCCcEEEcCChHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA---EQGEKPLR--AAIA-STFYKDLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~---~~g~~~lr--~~la-~~l~~~~~~~~~~i~~~~G~~~ 137 (433)
+.|+|..+++ +.++.+.+++.+.+.+.. ...|+. ..|...++ ++++ +++.+.++++...++ ++|+++
T Consensus 46 ~~i~l~~~~~--~~~~~v~~a~~~~~~~~~----~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~~~~v~-~~sGs~ 118 (447)
T 3h7f_A 46 DTLEMIASEN--FVPRAVLQAQGSVLTNKY----AEGLPGRRYYGGCEHVDVVENLARDRAKALFGAEFANVQ-PHSGAQ 118 (447)
T ss_dssp HSEECCTTCC--CCCHHHHHHHTSGGGGCC----CCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECC-CSSHHH
T ss_pred CceeEecCCC--CCCHHHHHHHHHHhcCCc----cccCCcccccCccHHHHHHHHHHHHHHHHHcCCCceEEE-eCCHHH
Confidence 4688866554 358999999988775211 112211 13555544 4455 555543466543333 555667
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCChhhh-hh--HHHhCCcccccccccccceEEEeecCccCCcccCCCC------CCCcc
Q 045431 138 DISR-LQIVFGSNVTMAVQDPSYPAYV-DS--SVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST------VARTD 207 (433)
Q Consensus 138 al~~-l~~l~~~gd~Vl~~~p~~~~~~-~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 207 (433)
++.. +..++++||+|++++|+|.++. .. ....|.. ..++.++.+.++ +..+++. ..+++
T Consensus 119 a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~~~~-~~~d~~~l~~~i~~~~~~ 187 (447)
T 3h7f_A 119 ANAAVLHALMSPGERLLGLDLANGGHLTHGMRLNFSGKL----------YENGFYGVDPAT-HLIDMDAVRATALEFRPK 187 (447)
T ss_dssp HHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHS----------SEEEEECCCTTT-CSCCHHHHHHHHHHHCCS
T ss_pred HHHHHHHHhcCCCCEEEecCcccccccchhhhhhhcCCe----------eEEEEcCcCccc-CCcCHHHHHHHHHhcCCe
Confidence 7775 6788999999999999998732 11 1122210 245556655332 2233322 13678
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccc-cccCCCCCcccccCCCCcceEEEecccccccccccce
Q 045431 208 IIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYAL-YISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRL 286 (433)
Q Consensus 208 ~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~ 286 (433)
+|++++|+||++. ++++|.++|++||+++|+||+|.. +.+.+...... +. ..+++.|+||++ +|+|.
T Consensus 188 ~i~~~~~~~~~~~-----~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~--~~---~di~~~s~sK~l--~G~~g 255 (447)
T 3h7f_A 188 VIIAGWSAYPRVL-----DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPV--PH---ADVVSTTVHKTL--GGGRS 255 (447)
T ss_dssp EEEEECSSCCSCC-----CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST--TT---CSEEEEESSGGG--CCCSC
T ss_pred EEEEcCCCCCCcc-----CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCC--CC---CcEEEecCCcCC--CCCCe
Confidence 8888899999986 489999999999999999999753 44443322211 11 237899999987 58899
Q ss_pred eeeeccccccccCCcchhHHHHHHHhhccCC-CcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-----C
Q 045431 287 GWTVIPKELLFSDGFPVAKDFNRIVCTCFNG-ASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-----G 360 (433)
Q Consensus 287 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----g 360 (433)
||++++++++ +.+.........+ ++...+.++..++......++++..+++.++++.+.+.|++. |
T Consensus 256 G~i~~~~~~~--------~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g 327 (447)
T 3h7f_A 256 GLIVGKQQYA--------KAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAG 327 (447)
T ss_dssp EEEEECGGGH--------HHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTT
T ss_pred EEEEECHHHH--------HHHhhhcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Confidence 9999998774 5555443333222 333334444444432222356888899999999999999988 8
Q ss_pred Ceeec-CCCccEEEEECCCC-ChHHHHHHHHHcCCeEec----CCCCCCCCCCCeEEEeec------cChhHHHHHHHHH
Q 045431 361 FKVYG-GKNAPYVWVQFPGR-SSWDVFSEILEKTHVVTT----PGSGFGPGGEGFIRVSAF------GHRGNVLEACKRF 428 (433)
Q Consensus 361 ~~~~~-~~~g~~~~~~~~~~-~~~~~~~~l~~~~gi~v~----~g~~f~~~~~~~iRi~~~------~~~~~l~~~l~~l 428 (433)
+.+.. +..++++|+++.+. ...+.+..+++++||.+. |+..+.+..++++||+.. .++++++++++.|
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l 407 (447)
T 3h7f_A 328 VSVVSGGTDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADII 407 (447)
T ss_dssp CEEGGGSCSSSEEEEECTTSSCCHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHH
T ss_pred eEEecCCCCCCEEEEEcCCCCCCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHH
Confidence 88764 34678899998632 244556666777799998 664344445678999852 4689999999999
Q ss_pred HHhh
Q 045431 429 KHLY 432 (433)
Q Consensus 429 ~~~l 432 (433)
.+++
T Consensus 408 ~~~l 411 (447)
T 3h7f_A 408 ATAL 411 (447)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-26 Score=226.66 Aligned_cols=342 Identities=7% Similarity=0.012 Sum_probs=215.9
Q ss_pred CCCCceEEecCCCC--CCC-ChHHHH-H-HHHH---HHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCC-CCCCcEE
Q 045431 60 YPDAEVISLGIGDT--TEP-IPEVIT-S-ALAK---RSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLG-IEEGDIF 130 (433)
Q Consensus 60 ~~~~~~i~l~~g~~--~~~-~~~~~~-~-a~~~---~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~-~~~~~i~ 130 (433)
.++...+||..+.. ++. .++.+. + ++.+ ++.+.. .....| ......++++.+++++ + .++++|+
T Consensus 51 ~~g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~--~~~~~~-~~~~~~~la~~la~~~----~~~~~~~v~ 123 (449)
T 2cjg_A 51 ITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNK--PSNSDV-YSVAMARFVETFARVL----GDPALPHLF 123 (449)
T ss_dssp TTCCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCC--CCTTTC-CCHHHHHHHHHHHHHH----CCTTCCEEE
T ss_pred CCCcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcC--CCCccc-CCHHHHHHHHHHHHhc----CCCCCCEEE
Confidence 34566889866543 333 478999 8 9999 665421 000123 2223455666666655 4 5678999
Q ss_pred EcCChHHHHHH-HHHh---cC-----------CCCEEEEeCCCChhhhhhHHHhCCc-ccc-cccccccceEEEeecCc-
Q 045431 131 VSDGAKCDISR-LQIV---FG-----------SNVTMAVQDPSYPAYVDSSVIMGQT-GEF-QKDAEKYGKIEYMRCTA- 192 (433)
Q Consensus 131 ~~~G~~~al~~-l~~l---~~-----------~gd~Vl~~~p~~~~~~~~~~~~g~~-~~~-~~~~~~~~~~~~~~~~~- 192 (433)
+++|+++++.+ +..+ .. +||+|++.+|+|+++......++.. ... ........++..++.++
T Consensus 124 ~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 203 (449)
T 2cjg_A 124 FVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRP 203 (449)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCT
T ss_pred EeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCc
Confidence 99999999987 4322 22 2899999999999876544333321 000 00000012455555543
Q ss_pred -cCC-------------cccCCCC-CCCccEEEEcCC-CCccc-cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC
Q 045431 193 -ENG-------------FFPDLST-VARTDIIFFCSP-NNPTG-AAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN 255 (433)
Q Consensus 193 -~~~-------------~~~~~~~-~~~~~~i~l~~p-~nPtG-~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~ 255 (433)
... +...+.. .+++++|+ ++| +|||| .+++.+++++|.++|++||+++|+||+|.++.+.+.
T Consensus 204 ~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi-~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~ 282 (449)
T 2cjg_A 204 GLDEPAMAALEAEALRQARAAFETRPHDIACFV-AEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGT 282 (449)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEE-ECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS
T ss_pred hhhccccchhhHHHHHHHHHHHHhcCCceEEEE-EeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCc
Confidence 111 1111111 14566655 556 78999 589999999999999999999999999998766554
Q ss_pred CCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh
Q 045431 256 PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF 335 (433)
Q Consensus 256 ~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~ 335 (433)
...+......++ +.||||.+ |+||++++++++....+. .+.......+.+.++++|.++.++++....
T Consensus 283 ~~~~~~~~~~~d----i~t~sK~l-----~iG~~~~~~~~~~~l~~~---~~~~~~~~~t~~~n~~~~~aa~aal~~~~~ 350 (449)
T 2cjg_A 283 AWAYQQLDVAPD----IVAFGKKT-----QVCGVMAGRRVDEVADNV---FAVPSRLNSTWGGNLTDMVRARRILEVIEA 350 (449)
T ss_dssp SSTHHHHTCCCS----EEEECGGG-----SSEEEEECGGGGGSTTCT---TTSTTSSCCSSSSCHHHHHHHHHHHHHHHH
T ss_pred ceeecccCCCce----EEEecCcc-----cEEEEEECHHHhhhhhhc---ccCCcccccCCCCCHHHHHHHHHHHHHHHh
Confidence 332222222222 23789987 799999998875210000 011122334556789999988888862211
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhc-----C-CeeecCCCccEEEEECCCC-ChHHHHHHHHHcCCeEecCCCCCCCCCCC
Q 045431 336 KAVHEVIGFYKENTDIIVETFNSL-----G-FKVYGGKNAPYVWVQFPGR-SSWDVFSEILEKTHVVTTPGSGFGPGGEG 408 (433)
Q Consensus 336 ~~~~~~~~~~~~~~~~l~~~l~~~-----g-~~~~~~~~g~~~~~~~~~~-~~~~~~~~l~~~~gi~v~~g~~f~~~~~~ 408 (433)
+.+.++++++++++.+.|+++ . +....+ .|.+++++++.. ...++...+++ +||.+.|+. .+
T Consensus 351 ---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~g------~~ 419 (449)
T 2cjg_A 351 ---EGLFERAVQHGKYLRARLDELAADFPAVVLDPRG-RGLMCAFSLPTTADRDELIRQLWQ-RAVIVLPAG------AD 419 (449)
T ss_dssp ---HTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEE-ETTEEEEECSSHHHHHHHHHHHHH-TTEECEEET------TT
T ss_pred ---ccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEee-ccEEEEEEECChHHHHHHHHHHHH-CCeEEecCC------CC
Confidence 345677788888888888753 2 433443 567888888742 34567777765 599999862 47
Q ss_pred eEEEe--eccChhHHHHHHHHHHHhh
Q 045431 409 FIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 409 ~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
++|++ +..+++++++++++|++++
T Consensus 420 ~iRi~~~~~~t~e~i~~~l~~l~~~l 445 (449)
T 2cjg_A 420 TVRFRPPLTVSTAEIDAAIAAVRSAL 445 (449)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 89996 4679999999999999875
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.5e-25 Score=210.18 Aligned_cols=301 Identities=13% Similarity=0.077 Sum_probs=208.9
Q ss_pred CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHh---cCCCCE
Q 045431 76 PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIV---FGSNVT 151 (433)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l---~~~gd~ 151 (433)
++|+.+.+++.+.+.. . .|.+.....++++++++++ +.+ ++++|+|+++++.+ +..+ +++||+
T Consensus 10 ~~~~~v~~a~~~~~~~-----~--~~~~~~~~~~l~~~la~~~----~~~--~v~~~~ggt~al~~~~~~~~~~~~~gd~ 76 (375)
T 2fnu_A 10 CLDKEDKKAVLEVLNS-----K--QLTQGKRSLLFEEALCEFL----GVK--HALVFNSATSALLTLYRNFSEFSADRNE 76 (375)
T ss_dssp CCCHHHHHHHHHHHTS-----S--CCSSSHHHHHHHHHHHHHH----TCS--EEEEESCHHHHHHHHHHHSSCCCTTSCE
T ss_pred CCCHHHHHHHHHHHHc-----C--cccCChHHHHHHHHHHHHh----CCC--eEEEeCCHHHHHHHHHHHhcccCCCCCE
Confidence 5788899999998753 1 1234456789999999998 554 89999999999997 5777 789999
Q ss_pred EEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEEEEcCCCCccccCCCHHHHH
Q 045431 152 MAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIFFCSPNNPTGAAATREQLT 228 (433)
Q Consensus 152 Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~~p~nPtG~~~~~~~~~ 228 (433)
|++++|+|+++...+...| .+++.++.++++.++.+ +++ .+++++|++++| ||.+.+ ++
T Consensus 77 Vl~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~---tG~~~~---l~ 138 (375)
T 2fnu_A 77 IITTPISFVATANMLLESG------------YTPVFAGIKNDGNIDELALEKLINERTKAIVSVDY---AGKSVE---VE 138 (375)
T ss_dssp EEECSSSCTHHHHHHHHTT------------CEEEECCBCTTSSBCGGGSGGGCCTTEEEEEEECG---GGCCCC---HH
T ss_pred EEECCCccHhHHHHHHHCC------------CEEEEeccCCCCCCCHHHHHhhcCcCceEEEEeCC---cCCccC---HH
Confidence 9999999999999888888 47888888654322222 222 256888887766 999988 78
Q ss_pred HHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccc--ccccccccceeeeecc--ccccccCCcchh
Q 045431 229 RLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFS--KYAGFTGVRLGWTVIP--KELLFSDGFPVA 304 (433)
Q Consensus 229 ~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~s--K~~~~~G~r~G~l~~~--~~~~~~~~~~~~ 304 (433)
+|.++|++||+++|+|++|+.+.... .. .+.... .+++.||| |+++ +| +|++++. ++++
T Consensus 139 ~i~~l~~~~~~~li~D~a~~~~~~~~-~~---~~~~~~--~i~~~s~s~~K~~~-~g--~g~~~~~~~~~~~-------- 201 (375)
T 2fnu_A 139 SVQKLCKKHSLSFLSDSSHALGSEYQ-NK---KVGGFA--LASVFSFHAIKPIT-TA--EGGAVVTNDSELH-------- 201 (375)
T ss_dssp HHHHHHHHHTCEEEEECTTCTTCEET-TE---ETTSSS--SEEEEECCTTSSSC-CS--SCEEEEESCHHHH--------
T ss_pred HHHHHHHHcCCEEEEECccccCCeEC-Ce---eccccC--CeEEEeCCCCCCcc-cc--CceEEEeCCHHHH--------
Confidence 99999999999999999998643221 11 122112 37788888 9997 46 7888874 3342
Q ss_pred HHHHHHHhhcc----------------CCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCC
Q 045431 305 KDFNRIVCTCF----------------NGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGK 367 (433)
Q Consensus 305 ~~~~~~~~~~~----------------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~ 367 (433)
+.+........ ...+.+...++...+ .++++..++.+++++++.+.|+++ |+.+..+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 276 (375)
T 2fnu_A 202 EKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQL-----KKAPFLMQKREEAALTYDRIFKDNPYFTPLHPL 276 (375)
T ss_dssp HHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGG
T ss_pred HHHHHHHhcCCccccccccccccccccCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhcCCCccccCCC
Confidence 44443321111 123333333222221 345778888999999999999987 77776541
Q ss_pred -----CccEEEEECCC--C-ChHHHHHHHHHcCCeEecCCCCCCCC---------------------CCCeEEEeec--c
Q 045431 368 -----NAPYVWVQFPG--R-SSWDVFSEILEKTHVVTTPGSGFGPG---------------------GEGFIRVSAF--G 416 (433)
Q Consensus 368 -----~g~~~~~~~~~--~-~~~~~~~~l~~~~gi~v~~g~~f~~~---------------------~~~~iRi~~~--~ 416 (433)
.++++|+.++. . +..++...|. ++||.+..+ |.+. ..+++||++. .
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~gi~v~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~ 353 (375)
T 2fnu_A 277 LKDKSSNHLYPILMHQKFFTCKKLILESLH-KRGILAQVH--YKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANL 353 (375)
T ss_dssp CSSCCCCSCEEEEECGGGGGGHHHHHHHHH-HTTEECBCC--CCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTC
T ss_pred CCCCcceEEEEEEeCccccchHHHHHHHHH-HCCCCcccc--ccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCC
Confidence 23456788873 2 4556666665 559999832 1110 1267999974 4
Q ss_pred ChhHHHHHHHHHHHhh
Q 045431 417 HRGNVLEACKRFKHLY 432 (433)
Q Consensus 417 ~~~~l~~~l~~l~~~l 432 (433)
+++++++++++|++++
T Consensus 354 t~~~i~~~~~~l~~~~ 369 (375)
T 2fnu_A 354 NLESVQNIAHSVLKTF 369 (375)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 8999999999998875
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.7e-25 Score=214.45 Aligned_cols=317 Identities=13% Similarity=0.093 Sum_probs=205.0
Q ss_pred cCCCCCCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHh-
Q 045431 69 GIGDTTEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIV- 145 (433)
Q Consensus 69 ~~g~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l- 145 (433)
+.|.|+++ .|+.+.+++.+.+... ....|++..|.+++++++++.+.+.++++ ++++++|+++++.+ +..+
T Consensus 5 ~~g~p~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~g~~~l~~~l~~~la~~~g~~--~~i~~~~gt~al~~~~~~~~ 78 (418)
T 2c81_A 5 FDHWPEWPQHSDRTRRKIEEVFQSN----RWAISGYWTGEESMERKFAKAFADFNGVP--YCVPTTSGSTALMLALEALG 78 (418)
T ss_dssp ---CCCSSCCCHHHHHHHHHHHHHT----CCSTTSBCCSSCCHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTT
T ss_pred cCCCCCCCCCCHHHHHHHHHHHhcC----CccccCcccCCHHHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcC
Confidence 34556555 4789999999988752 23347666674444444444443322655 45556666789887 5677
Q ss_pred cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC---CCC--CCCccEEEEcCCCCcccc
Q 045431 146 FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD---LST--VARTDIIFFCSPNNPTGA 220 (433)
Q Consensus 146 ~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~i~l~~p~nPtG~ 220 (433)
+++||+|+++.|+|+++...+...| .+++.++.+++ ++..+ +++ .+++++|+++ ||||.
T Consensus 79 ~~~gd~Vl~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~v~~~---~~~G~ 142 (418)
T 2c81_A 79 IGEGDEVIVPSLTWIATATAVLNVN------------ALPVFVDVEAD-TYCIDPQLIKSAITDKTKAIIPV---HLFGS 142 (418)
T ss_dssp CCTTCEEEEESSSCTHHHHHHHHTT------------CEEEEECBCTT-TCSBCHHHHGGGCCTTEEEECCB---CCTTC
T ss_pred CCCcCEEEECCCccHhHHHHHHHcC------------CEEEEEecCCC-CCCcCHHHHHHhhCCCCeEEEEe---CCcCC
Confidence 7999999999999999999998888 47888887642 22222 222 2467887764 58998
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEeccccccc-cCCCCCcccccCCCCcceEEEecc--cccccccccceeeeecc-cccc
Q 045431 221 AATREQLTRLVQFAKDNGSIIVYDSAYALYI-SDDNPRSIFEIPGAKEVAIETSSF--SKYAGFTGVRLGWTVIP-KELL 296 (433)
Q Consensus 221 ~~~~~~~~~i~~~a~~~~~~li~De~~~~~~-~~~~~~~~~~~~~~~~~vi~i~S~--sK~~~~~G~r~G~l~~~-~~~~ 296 (433)
..+ +++|.++|++||++||+|++|+.+. +++. ++..+ .+ +.+.|| ||.++. | |.||++++ ++++
T Consensus 143 ~~~---~~~i~~~~~~~~~~li~D~a~~~~~~~~~~--~~~~~---~~--~~~~s~s~~K~~~~-g-~~g~~~~~~~~l~ 210 (418)
T 2c81_A 143 MAN---MDEINEIAQEHNLFVIEDCAQSHGSVWNNQ--RAGTI---GD--IGAFSCQQGKVLTA-G-EGGIIVTKNPRLF 210 (418)
T ss_dssp CCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTE--ETTSS---SS--EEEEECCTTSSSCS-S-SCEEEEESCHHHH
T ss_pred ccc---HHHHHHHHHHCCCEEEEECcccccCccCCE--ecccc---cc--eEEEeccCCcccCC-C-CeEEEEECCHHHH
Confidence 755 8899999999999999999999765 4432 12122 22 667788 999984 8 99999986 4553
Q ss_pred ccCCcchhHHHHHHHhhccC-----------CC--------------cHHHHHHH-HHhcCcCChhHHHHHHHHHHHHHH
Q 045431 297 FSDGFPVAKDFNRIVCTCFN-----------GA--------------SNISQAGG-LACLSPEGFKAVHEVIGFYKENTD 350 (433)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~-----------~~--------------~~~~q~~~-~~~l~~~~~~~~~~~~~~~~~~~~ 350 (433)
+.+......... .. ....+.+. ...+ +++++..++.+++++
T Consensus 211 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l-----~~~~~~~~~~~~~~~ 277 (418)
T 2c81_A 211 --------ELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQL-----QELDDKNAIREKNAM 277 (418)
T ss_dssp --------HHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHH-----TTHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 444433321110 00 01112211 1112 234667777778888
Q ss_pred HHHHHHhhc-CCeee-cCCC-ccE----EEEECC-----CCChHHHHHHHHHcCCeE---ecCCCCCCC-----------
Q 045431 351 IIVETFNSL-GFKVY-GGKN-APY----VWVQFP-----GRSSWDVFSEILEKTHVV---TTPGSGFGP----------- 404 (433)
Q Consensus 351 ~l~~~l~~~-g~~~~-~~~~-g~~----~~~~~~-----~~~~~~~~~~l~~~~gi~---v~~g~~f~~----------- 404 (433)
++.+.|+++ |+.+. .+.+ +.. +.+.++ +.+..++...|.+++||. +.+|.....
T Consensus 278 ~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~ 357 (418)
T 2c81_A 278 FLNDALSKIDGIKVMKRPPQVSRQTYYGYVFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKN 357 (418)
T ss_dssp HHHHHHTTSTTEEECCCCTTEEECCCSEEEEEECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCT
T ss_pred HHHHHhccCCCcccCCCCCCCcccccEEEEEEEccccccccCHHHHHHHHHHcCCCCcccccccccccccCchhcccccc
Confidence 999999887 88876 3434 232 226776 346667777766555999 887752100
Q ss_pred ---------------CC--------CCeEEEee--cc-ChhHHHHHHHHHHHhh
Q 045431 405 ---------------GG--------EGFIRVSA--FG-HRGNVLEACKRFKHLY 432 (433)
Q Consensus 405 ---------------~~--------~~~iRi~~--~~-~~~~l~~~l~~l~~~l 432 (433)
.. .+.+||++ .. +++|++..++.|++++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~ 411 (418)
T 2c81_A 358 RYLKSVRKTEAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELA 411 (418)
T ss_dssp TSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHH
Confidence 00 14799996 56 8999999999998875
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.6e-26 Score=218.92 Aligned_cols=287 Identities=16% Similarity=0.151 Sum_probs=193.5
Q ss_pred CCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHh-CCccccccccc
Q 045431 103 AEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIM-GQTGEFQKDAE 180 (433)
Q Consensus 103 ~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~ 180 (433)
+.....++++.+++++ +.+ +.|++++| ++++.+ +..++++||+|++++|+|+++...+... ...+
T Consensus 63 ~~~~~~~l~~~la~~~----g~~-~~i~~~sG-~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g------- 129 (398)
T 1gc0_A 63 SNPTLNLLEARMASLE----GGE-AGLALASG-MGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFG------- 129 (398)
T ss_dssp CCHHHHHHHHHHHHHH----TCS-EEEEESSH-HHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGT-------
T ss_pred CChHHHHHHHHHHHHh----CCC-cEEEECCH-HHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHHcC-------
Confidence 4456778889999887 554 55666666 688886 6777899999999999999987766322 1112
Q ss_pred ccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCccc
Q 045431 181 KYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIF 260 (433)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~ 260 (433)
.++..++.++...+...+ .+++++|++++|+||||.+++ +++|.++|++||+++|+|++|+.+.... ++
T Consensus 130 --~~~~~~~~~d~~~l~~~i--~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~~---~~- 198 (398)
T 1gc0_A 130 --VKLRHVDMADLQALEAAM--TPATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQR---PL- 198 (398)
T ss_dssp --CEEEEECTTCHHHHHHHC--CTTEEEEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHCC---GG-
T ss_pred --CEEEEECCCCHHHHHHhc--CCCCeEEEEECCCCCCccccc---HHHHHHHHHHcCCEEEEECCCcccccCC---ch-
Confidence 366677653211111111 257899999999999999997 8899999999999999999999654421 22
Q ss_pred ccCCCCcceEEEecccccccccccce-eeeeccccccccCCcchhHHHHHHHhh-ccCCCcHHHHHHHHHhcCcCChhHH
Q 045431 261 EIPGAKEVAIETSSFSKYAGFTGVRL-GWTVIPKELLFSDGFPVAKDFNRIVCT-CFNGASNISQAGGLACLSPEGFKAV 338 (433)
Q Consensus 261 ~~~~~~~~vi~i~S~sK~~~~~G~r~-G~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~ 338 (433)
.. +..+++.|+||.++.+|.|+ ||++++++.+ .+.+...... .....+++.+.++.+.++. +
T Consensus 199 ~~----~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~ 262 (398)
T 1gc0_A 199 EL----GADLVVHSATKYLSGHGDITAGIVVGSQALV-------DRIRLQGLKDMTGAVLSPHDAALLMRGIKT-----L 262 (398)
T ss_dssp GG----TCSEEEEETTTTTTCSSSCCCEEEEECHHHH-------HHHHHTHHHHHTCCCCCHHHHHHHHHHHTT-----H
T ss_pred hh----CceEEEECCccccCCCCCCeEEEEEEChHHH-------HHHHHHHhhccCCCCCCHHHHHHHHhccch-----H
Confidence 12 24589999999999899998 9999988764 2234443333 3344677777777776652 3
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-CCe--------------eecC---CCccEEEEECCCCChHHHHHHHHHcCCeEecC--
Q 045431 339 HEVIGFYKENTDIIVETFNSL-GFK--------------VYGG---KNAPYVWVQFPGRSSWDVFSEILEKTHVVTTP-- 398 (433)
Q Consensus 339 ~~~~~~~~~~~~~l~~~l~~~-g~~--------------~~~~---~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~-- 398 (433)
....++..++.+.+.+.|+++ ++. +..+ ..+.++.+.+++ ..+....++.+.++.+..
T Consensus 263 ~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~l~~~~i~~~~~s 340 (398)
T 1gc0_A 263 NLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKG--GIGAGRRFMNALQLFSRAVS 340 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETT--HHHHHHHHHHHCSSSEECSC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECC--CHHHHHHHHHhCCCceeccC
Confidence 455666777777788888764 221 1111 246677778764 234455666667877765
Q ss_pred -CCCCC---------------------CCCCCeEEEeecc--ChhHHHHHHHHHHHh
Q 045431 399 -GSGFG---------------------PGGEGFIRVSAFG--HRGNVLEACKRFKHL 431 (433)
Q Consensus 399 -g~~f~---------------------~~~~~~iRi~~~~--~~~~l~~~l~~l~~~ 431 (433)
|+.+. ...++.+|||+.. ++++++.+.+.|+++
T Consensus 341 ~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 341 LGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp CSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred CCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 32210 0125799999743 578888888888765
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-24 Score=208.94 Aligned_cols=280 Identities=14% Similarity=0.123 Sum_probs=188.8
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhh----HHHhCCccccccc
Q 045431 104 EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDS----SVIMGQTGEFQKD 178 (433)
Q Consensus 104 ~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~----~~~~g~~~~~~~~ 178 (433)
.....+|++.+++++ +.+ +.++++++++++.+ +..++++||+|++++|+|+++... ++..|
T Consensus 58 ~~~~~~l~~~la~~~----g~~--~~i~~~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g-------- 123 (389)
T 3acz_A 58 NPTVEQFEEMVCSIE----GAA--GSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFG-------- 123 (389)
T ss_dssp CHHHHHHHHHHHHHH----TCS--EEEEESSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTT--------
T ss_pred ChHHHHHHHHHHHHh----CCC--eEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcC--------
Confidence 455678999999987 554 45555556689887 566789999999999999987665 35566
Q ss_pred ccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCc
Q 045431 179 AEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRS 258 (433)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~ 258 (433)
.+++.++..+...+...+ .+++++|++++|+||||.+++ +++|.++|++||+++|+|++|+.+... .+
T Consensus 124 ----~~~~~v~~~d~~~l~~~i--~~~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~livD~~~~~~~~~-~~-- 191 (389)
T 3acz_A 124 ----IEVDLIDTSDVEKVKAAW--KPNTKMVYLESPANPTCKVSD---IKGIAVVCHERGARLVVDATFTSPCFL-KP-- 191 (389)
T ss_dssp ----CEEEEECTTCHHHHHHTC--CTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTC-CG--
T ss_pred ----CEEEEECCCCHHHHHHhc--CCCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccc-Cc--
Confidence 467777763221222122 247899999999999999998 889999999999999999999865432 12
Q ss_pred ccccCCCCcceEEEecccccccccccce-eeeeccc-cccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChh
Q 045431 259 IFEIPGAKEVAIETSSFSKYAGFTGVRL-GWTVIPK-ELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFK 336 (433)
Q Consensus 259 ~~~~~~~~~~vi~i~S~sK~~~~~G~r~-G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~ 336 (433)
+ .. +..+++.|+||.++.+|.|+ ||+++++ +++ +.+...........++..+.++.+.++.
T Consensus 192 ~-~~----~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~--------~~l~~~~~~~g~~~~~~~~~~~~~~l~~---- 254 (389)
T 3acz_A 192 L-EL----GADIALHSVSKYINGHGDVIGGVSSAKTAEDI--------ATIKFYRKDAGSLMAPMDAFLCARGMKT---- 254 (389)
T ss_dssp G-GT----TCSEEEEETTTTTTCSSCCCCEEEEESSHHHH--------HHHHHHHHHHCCCCCHHHHHHHHHHHTT----
T ss_pred c-cc----CCeEEEECChhhccCCCCceeEEEEECcHHHH--------HHHHHHHHhcCCCCCHHHHHHHHcCccH----
Confidence 2 11 34589999999999899998 9999998 764 5555544333344566777766666652
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC-Ce--------------eec---CCCccEEEEECCCCChHHHHHHHHHcCCeEecC
Q 045431 337 AVHEVIGFYKENTDIIVETFNSLG-FK--------------VYG---GKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTP 398 (433)
Q Consensus 337 ~~~~~~~~~~~~~~~l~~~l~~~g-~~--------------~~~---~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~ 398 (433)
+....++..++.+.+.+.|++++ +. +.. ...|.++.+.+++ .+....++.+.|+.+.+
T Consensus 255 -l~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~---~~~~~~~l~~~~i~~~~ 330 (389)
T 3acz_A 255 -LPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS---FEAAKKLMEHLKVCTLA 330 (389)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS---HHHHHHHHTTCSSSEEB
T ss_pred -HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC---HHHHHHHHHhCCCcEEC
Confidence 23344555566777777776642 11 110 1135677788764 34455666677888776
Q ss_pred ---C------CCCCC---------------CCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 399 ---G------SGFGP---------------GGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 399 ---g------~~f~~---------------~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
| ..+.. ..++.+|+|+... +.++.++.|.+++
T Consensus 331 ~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~--~~~~li~~l~~al 386 (389)
T 3acz_A 331 VSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIE--NVDDIIADLKQAL 386 (389)
T ss_dssp SCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSS--CHHHHHHHHHHHH
T ss_pred cCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccC--CHHHHHHHHHHHH
Confidence 4 22211 1157999997543 5556666666554
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-24 Score=208.84 Aligned_cols=312 Identities=15% Similarity=0.118 Sum_probs=201.1
Q ss_pred CCCChHHHHHHHHHHHhhcccCCCCCCCCCC--CCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCC
Q 045431 74 TEPIPEVITSALAKRSYALSTQEGYSGYGAE--QGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNV 150 (433)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~--~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd 150 (433)
+++.|+.+.+++. . ...+.|+.. ....++++.+++++ +. +++++++|+++++.+ +..++++||
T Consensus 31 ~~~~~~~~~~~~~---~-----~~~~~y~~~~~~~~~~l~~~la~~~----g~--~~~~~~~~gt~a~~~al~~l~~~gd 96 (412)
T 2cb1_A 31 GFKTLEEGQERFA---T-----GEGYVYARQKDPTAKALEERLKALE----GA--LEAVVLASGQAATFAALLALLRPGD 96 (412)
T ss_dssp CCSSHHHHHHHHH---H-----CCSCSBTTTCCHHHHHHHHHHHHHH----TC--SEEEEESSHHHHHHHHHHTTCCTTC
T ss_pred ecCChHHHHHHhc---c-----ccCcCcCCCCChHHHHHHHHHHHHh----CC--CcEEEECCHHHHHHHHHHHHhCCCC
Confidence 3556666666553 1 122355432 45788999999987 54 489999999999997 567789999
Q ss_pred EEEEeCCCChhhhhhHHH-hCCcccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHH
Q 045431 151 TMAVQDPSYPAYVDSSVI-MGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTR 229 (433)
Q Consensus 151 ~Vl~~~p~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~ 229 (433)
+|++++|+|++....+.. +...+ .+++.++.+.+ .+...+ .+++++|++++|+||||.+++ +++
T Consensus 97 ~vi~~~~~~~~~~~~~~~~~~~~g---------~~~~~~~~~~~-~l~~~i--~~~~~~v~~~~~~n~~G~~~~---l~~ 161 (412)
T 2cb1_A 97 EVVAAKGLFGQTIGLFGQVLSLMG---------VTVRYVDPEPE-AVREAL--SAKTRAVFVETVANPALLVPD---LEA 161 (412)
T ss_dssp EEEEETTCCHHHHHHHHHTTTTTT---------CEEEEECSSHH-HHHHHC--CTTEEEEEEESSCTTTCCCCC---HHH
T ss_pred EEEEeCCCchhHHHHHHHHHHHcC---------CEEEEECCCHH-HHHHHh--ccCCeEEEEeCCCCCCccccc---HHH
Confidence 999999999886665433 22222 36777776411 111111 257899999999999999997 889
Q ss_pred HHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccc-cCC--------
Q 045431 230 LVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLF-SDG-------- 300 (433)
Q Consensus 230 i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~-~~~-------- 300 (433)
|.++|++||+++|+|++|+.+.....+ + . .+..+++.|+||.++.+|.|+|++++.++.+. ...
T Consensus 162 i~~l~~~~~~~li~D~~~~~~~~~~~~--~-~----~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 234 (412)
T 2cb1_A 162 LATLAEEAGVALVVDNTFGAAGALCRP--L-A----WGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDL 234 (412)
T ss_dssp HHHHHHHHTCEEEEECGGGTTTTSCCG--G-G----GTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC--
T ss_pred HHHHHHHcCCEEEEECCCccccccCCc--c-c----cCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccc
Confidence 999999999999999999865222111 1 1 23459999999999889999999887653210 000
Q ss_pred -----------cchhHHHHHHH-hhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeee-cC
Q 045431 301 -----------FPVAKDFNRIV-CTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVY-GG 366 (433)
Q Consensus 301 -----------~~~~~~~~~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~-~~ 366 (433)
..+.+.++... .......++.....+...++ .++...++..++.+.+.+.|.+. ++..+ .|
T Consensus 235 ~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~-----~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p 309 (412)
T 2cb1_A 235 KGQIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLE-----TVALRVARMSETARFLAERLQGHPKVKALRYP 309 (412)
T ss_dssp -----HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGG-----GHHHHHHHHHHHHHHHHHHHHTCTTCSEEECT
T ss_pred cccchhhccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCc-----hHHHHHHHHHHHHHHHHHHHHcCCCeeEEECC
Confidence 01122232222 11111223443333333332 23455556677888899999887 77643 22
Q ss_pred ----------------CCccEEEEECCCCChHHHHHHHHHcCCeEecCCC---------CCCC---------------CC
Q 045431 367 ----------------KNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGS---------GFGP---------------GG 406 (433)
Q Consensus 367 ----------------~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~---------~f~~---------------~~ 406 (433)
..+.++.+.+ + +. +....++++.||.+ .++ .+.. ..
T Consensus 310 ~~~~~p~~~~~~~~~~~~~~iv~~~~-~-~~-~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~ 385 (412)
T 2cb1_A 310 GLPEDPAHRNARKYLASGGPILTLDL-G-DL-ERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVT 385 (412)
T ss_dssp TSTTCTTHHHHHHHCSSSCSEEEEEC-S-SH-HHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCC
T ss_pred CCCCCccHHHHHHhCCCCceEEEEEe-C-CH-HHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCC
Confidence 2355778888 5 43 44455566679998 774 2210 01
Q ss_pred CCeEEEeec--cChhHHHHHHHHHHH
Q 045431 407 EGFIRVSAF--GHRGNVLEACKRFKH 430 (433)
Q Consensus 407 ~~~iRi~~~--~~~~~l~~~l~~l~~ 430 (433)
++.+|+|+. .++++++.+++.|++
T Consensus 386 ~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 386 PGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp TTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred CCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 579999974 467888888888864
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9e-25 Score=210.27 Aligned_cols=283 Identities=14% Similarity=0.108 Sum_probs=195.2
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhH----HHhCCccccccc
Q 045431 104 EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSS----VIMGQTGEFQKD 178 (433)
Q Consensus 104 ~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~~~~~ 178 (433)
.....+|++.+++++ +. +++++++|+++++.+ +..++++||+|++++|+|+++...+ ...|
T Consensus 65 ~~~~~~l~~~la~~~----g~--~~~~~~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g-------- 130 (392)
T 3qhx_A 65 NPTRTALEAALAAVE----DA--AFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWN-------- 130 (392)
T ss_dssp CHHHHHHHHHHHHHT----TC--SEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGT--------
T ss_pred ChHHHHHHHHHHHHh----CC--CcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcC--------
Confidence 445678899999886 54 368888888999987 6778999999999999999877665 3344
Q ss_pred ccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCc
Q 045431 179 AEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRS 258 (433)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~ 258 (433)
.++..++.++...+...+ .+++++|++++|+||||.+.+ +++|.++|++||+++|+|++|+..... .+
T Consensus 131 ----~~~~~v~~~d~~~l~~~i--~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~g~~li~D~~~~~~~~~-~~-- 198 (392)
T 3qhx_A 131 ----VEYTPVALADLDAVRAAI--RPTTRLIWVETPTNPLLSIAD---IAGIAQLGADSSAKVLVDNTFASPALQ-QP-- 198 (392)
T ss_dssp ----CEEEEECTTCHHHHHHHC--CTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTC-CG--
T ss_pred ----cEEEEeCCCCHHHHHHhh--CCCCeEEEEECCCCCCcEEec---HHHHHHHHHHcCCEEEEECCCcccccC-Ch--
Confidence 377777764221111111 258899999999999999988 889999999999999999999854221 11
Q ss_pred ccccCCCCcceEEEecccccccccc-cceeeeeccc-cccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChh
Q 045431 259 IFEIPGAKEVAIETSSFSKYAGFTG-VRLGWTVIPK-ELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFK 336 (433)
Q Consensus 259 ~~~~~~~~~~vi~i~S~sK~~~~~G-~r~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~ 336 (433)
+ .. +..+++.|+||.+|.+| +|.||+++++ ++ .+.+...........++..+.++...++.
T Consensus 199 ~-~~----~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~--------~~~l~~~~~~~g~~~~~~~~~~~~~~l~~---- 261 (392)
T 3qhx_A 199 L-SL----GADVVLHSTTKYIGGHSDVVGGALVTNDEEL--------DQSFAFLQNGAGAVPGPFDAYLTMRGLKT---- 261 (392)
T ss_dssp G-GG----TCSEEEEETTTTTTCSSCCCCEEEEESCHHH--------HHHHHHHHHHHCCCCCHHHHHHHHHHHTT----
T ss_pred H-Hh----CCcEEEEcCccccCCCCCceEEEEEECcHHH--------HHHHHHHHHhcCCCCCHHHHHHHHhhhhH----
Confidence 1 12 23488999999998666 7999999985 44 35566555555566778888777776653
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-CCeee-cC----------------CCccEEEEECCCC-ChHHHHHHHHHcCCeEec
Q 045431 337 AVHEVIGFYKENTDIIVETFNSL-GFKVY-GG----------------KNAPYVWVQFPGR-SSWDVFSEILEKTHVVTT 397 (433)
Q Consensus 337 ~~~~~~~~~~~~~~~l~~~l~~~-g~~~~-~~----------------~~g~~~~~~~~~~-~~~~~~~~l~~~~gi~v~ 397 (433)
+....++..++.+.+.+.|+++ ++..+ .| ..|..+++.+++. ...+.+...++..++.+.
T Consensus 262 -l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~~~~~~~s 340 (392)
T 3qhx_A 262 -LVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTNIFILAES 340 (392)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCSSSEECSC
T ss_pred -HHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCCCceECCC
Confidence 3455566778888888888876 44222 11 1266889999752 222223333455578887
Q ss_pred CCCCCC----C--------------CCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 398 PGSGFG----P--------------GGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 398 ~g~~f~----~--------------~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
.|+.++ + ..++.||||+.. ++.++.++.|.++|
T Consensus 341 ~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~--e~~~~~i~~l~~al 391 (392)
T 3qhx_A 341 LGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGI--EDVADLLDDLKQAL 391 (392)
T ss_dssp CCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCS--SCHHHHHHHHHHHH
T ss_pred CCCCCceeeCcccccccccCHHHcCCCCCeEEEEecc--CCHHHHHHHHHHHh
Confidence 777643 1 235789999754 35555556665554
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=219.96 Aligned_cols=280 Identities=10% Similarity=0.047 Sum_probs=187.3
Q ss_pred CCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccc
Q 045431 103 AEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEK 181 (433)
Q Consensus 103 ~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~ 181 (433)
+.....++++.+++ + +.+ +++++|+|+++++.+ +..++++||+|++++|+|.++...+...|.
T Consensus 55 ~~~~~~~~~~~la~-~----g~~-~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~~~~G~---------- 118 (446)
T 2x3l_A 55 PEEVILKSMKQVEK-H----SDY-DGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALDISQQ---------- 118 (446)
T ss_dssp CSSHHHHHHHHHCS-C----TTE-EEEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHHHHHHHTC----------
T ss_pred cchHHHHHHHHHHh-c----CCC-ceEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHHHHHHcCC----------
Confidence 44556677777777 6 665 789999999999997 677789999999999999999999998884
Q ss_pred cceEEEeec--Ccc----CCccc-CCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccc-cccC
Q 045431 182 YGKIEYMRC--TAE----NGFFP-DLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYAL-YISD 253 (433)
Q Consensus 182 ~~~~~~~~~--~~~----~~~~~-~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~-~~~~ 253 (433)
.++.++. +++ ..... .+ ..++++++++++ +|+||.+++ +++|+++|++||+++|+||+|+. +.+.
T Consensus 119 --~~~~v~~~~~~~~~~~~~~d~~~l-~~~~~~~v~~~~-~n~~G~~~~---l~~I~~l~~~~~~~livDea~~~~~~f~ 191 (446)
T 2x3l_A 119 --EGHFIETHQSPLTNHYNKVNLSRL-NNDGHKLVVLTY-PNYYGETFN---VEEVIKSLHQLNIPVLIDEAHGAHFGLQ 191 (446)
T ss_dssp --CEEECEEEECTTTSSEEEEEC--------CCEEEEES-SCTTSCCCC---HHHHHHHHHHTTCCEEEECTTCTTTTST
T ss_pred --eEEEEeCeeccccCcCCCCCHHHH-cCCCceEEEEEC-CCCCeEecC---HHHHHHHHHhcCCeEEEcchhhhhhccC
Confidence 5666665 322 11111 12 335789999988 566999998 78999999999999999999986 3344
Q ss_pred CCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHH-hhccCCCcHHHHHHH---HHh
Q 045431 254 DNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIV-CTCFNGASNISQAGG---LAC 329 (433)
Q Consensus 254 ~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~q~~~---~~~ 329 (433)
+.+.+..... . .+++.|+||+++ ++.++||++++++++. ...+.... ......++....+++ ...
T Consensus 192 ~~~~~~~~~g--~--Di~~~S~~K~l~-~~~g~g~l~~~~~~i~------~~~~~~~~~~~~~~s~~~~~~aal~~a~~~ 260 (446)
T 2x3l_A 192 GFPDSTLNYQ--A--DYVVQSFHKTLP-ALTMGSVLYIHKNAPY------RENIIEYLSYFQTSSPSYLIMASLESAAQF 260 (446)
T ss_dssp TSCCCGGGGT--C--SEEEECHHHHSS-SCTTCEEEEEETTCTT------HHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred CCCCChHHcC--C--CEEEECCccccc-cccccEEEEEcCCcCC------HHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 3233333332 2 288999999764 5556899999888751 12222211 112222333332222 222
Q ss_pred cCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEec-CCCCCCCCCCC
Q 045431 330 LSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTT-PGSGFGPGGEG 408 (433)
Q Consensus 330 l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~-~g~~f~~~~~~ 408 (433)
+...+. +++.++.++..+.+.+. |+.+..+..+.++|+.+++.+..++...|.++ ||.+. +| .+
T Consensus 261 l~~~g~---~~~~~~~~~l~~~l~~~----g~~~~~~~~~~~l~i~~~~~~~~~l~~~L~~~-GI~v~~~g-------~~ 325 (446)
T 2x3l_A 261 YKTYDS---TLFFAKRAQLIECLENK----GFEMLQVDDPLKLLIKYEGFTGHDIQNWFMNA-HIYLELAD-------DY 325 (446)
T ss_dssp HHHCCC---HHHHHHHHHHHHHHHHH----TCEEEECSSTTEEEEECTTSCHHHHHHHHHHT-TEEESEEC-------SS
T ss_pred HHHhCH---HHHHHHHHHHHHHHHHc----CCEECcCCCCeEEEEEeCCcCHHHHHHHHHHC-CCEEEecC-------CC
Confidence 322221 22344444444444444 78877665567899999866677777777666 99997 43 36
Q ss_pred eEEEeec--cChhHHHHHHHHHHHhh
Q 045431 409 FIRVSAF--GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 409 ~iRi~~~--~~~~~l~~~l~~l~~~l 432 (433)
++|+++. .+++++ +++++|++++
T Consensus 326 ~iRi~~~~~~t~e~i-~l~~aL~~~~ 350 (446)
T 2x3l_A 326 QALAILPLWHHDDTY-LFDSLLRKIE 350 (446)
T ss_dssp CEEEECCCCCTTCCC-CHHHHHHHHH
T ss_pred EEEEEeecCCCHHHH-HHHHHHHHHH
Confidence 7999974 488889 9999998875
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.1e-25 Score=210.90 Aligned_cols=312 Identities=12% Similarity=0.099 Sum_probs=208.8
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-H
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-L 142 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l 142 (433)
++++++.+.|+. ++ +.+++.+.+.. ..|.+..+..+|++++++++ +.+ ++++++|+++++.+ +
T Consensus 7 ~~~~l~~~~~~~--~~-~~~~~~~~~~~-------~~~~~~~~~~~l~~~la~~~----~~~--~~~~~~~gt~a~~~~~ 70 (374)
T 3uwc_A 7 PYSYLERQFADI--EP-YLNDLREFIKT-------ADFTLGAELEKFEKRFAALH----NAP--HAIGVGTGTDALAMSF 70 (374)
T ss_dssp CSCCHHHHTSSC--HH-HHHHHHHHHHH-------TCCSSCHHHHHHHHHHHHHT----TCS--EEEEESCHHHHHHHHH
T ss_pred eeeccccCCCCc--hH-HHHHHHHHHHc-------CCcccChhHHHHHHHHHHHh----CCC--cEEEeCCHHHHHHHHH
Confidence 467888887653 44 88888887754 14667788999999999997 443 78888888999987 5
Q ss_pred HHh-cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEEEEcCCCCcc
Q 045431 143 QIV-FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIFFCSPNNPT 218 (433)
Q Consensus 143 ~~l-~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~~p~nPt 218 (433)
..+ +++||+|++++|+|+++...++..| .+++.++.+.+..++.+ +++ .+++++|+ |+|||
T Consensus 71 ~~~~~~~gd~v~~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~---~~n~~ 135 (374)
T 3uwc_A 71 KMLNIGAGDEVITCANTFIASVGAIVQAG------------ATPVLVDSENGYVIDPEKIEAAITDKTKAIM---PVHYT 135 (374)
T ss_dssp HHTTCCTTCEEEEESSSCHHHHHHHHHTT------------CEEEEECBCTTSSBCGGGTGGGCCTTEEEEC---CBCGG
T ss_pred HHcCCCCCCEEEECCCccHHHHHHHHHcC------------CEEEEEecCCCCCcCHHHHHHhCCCCceEEE---EeCCc
Confidence 777 8999999999999999999998888 47888887633222222 222 24667655 89999
Q ss_pred ccCCCHHHHHHHHHHHHHcCCEEEEeccccccc-cCCCCCcccccCCCCcceEEEeccc--ccccccccceeeeeccccc
Q 045431 219 GAAATREQLTRLVQFAKDNGSIIVYDSAYALYI-SDDNPRSIFEIPGAKEVAIETSSFS--KYAGFTGVRLGWTVIPKEL 295 (433)
Q Consensus 219 G~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~-~~~~~~~~~~~~~~~~~vi~i~S~s--K~~~~~G~r~G~l~~~~~~ 295 (433)
|.+.+ +++|.++|++||+++|+|++|+.+. +.+. +...+ . .+++.|+| |.++.+|. .|+++++++.
T Consensus 136 G~~~~---~~~i~~~~~~~~~~li~D~~~~~g~~~~~~--~~~~~---~--d~~~~s~~~~K~l~~~g~-~g~~~~~~~~ 204 (374)
T 3uwc_A 136 GNIAD---MPALAKIAKKHNLHIVEDACQTILGRINDK--FVGSW---G--QFACFSLHPLKNLNVWSD-AGVIITHSDE 204 (374)
T ss_dssp GCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTE--ETTSS---S--SEEEEECSSSSSSCCSSC-CEEEEESCHH
T ss_pred CCcCC---HHHHHHHHHHcCCEEEEeCCCccCceeCCe--ecccc---c--cEEEEeCCCCCcCCccce-eEEEEeCCHH
Confidence 99887 8889999999999999999998643 2211 11111 2 36777866 99974365 8888877654
Q ss_pred cccCCcchhHHHHHHHhh------------ccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcC--C
Q 045431 296 LFSDGFPVAKDFNRIVCT------------CFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLG--F 361 (433)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g--~ 361 (433)
+ .+.+...... .....+.+...+....+ +.+++..++.+++.+.+.+.|++.+ +
T Consensus 205 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~-----~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 272 (374)
T 3uwc_A 205 Y-------AEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLM-----NQLETITEKRRGIAHLYDQSFVDLSEFI 272 (374)
T ss_dssp H-------HHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHG-----GGHHHHHHHHHHHHHHHHHHTGGGTTTE
T ss_pred H-------HHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccCCCeE
Confidence 3 2444433211 01112333333222222 2346677778888889999998874 6
Q ss_pred eeecC-CCccE----EEEECCCCChHHHHHHHHHcCCeEecCCCCCC----C----------C-------CCCeEEEee-
Q 045431 362 KVYGG-KNAPY----VWVQFPGRSSWDVFSEILEKTHVVTTPGSGFG----P----------G-------GEGFIRVSA- 414 (433)
Q Consensus 362 ~~~~~-~~g~~----~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~----~----------~-------~~~~iRi~~- 414 (433)
.+... ..+.. +.+.. .+..++...|.+ +||.+.++.... + . ..+.+||++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~L~~-~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~ 349 (374)
T 3uwc_A 273 DVPVRREGVYHVFHIYVLRV--KYRDQLFQYLKD-NGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAH 349 (374)
T ss_dssp ECCCCCTTEECCCSSEEEEE--TTHHHHHHHHHH-TTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCC
T ss_pred EeccCCCCCceeeEEEEEEc--CCHHHHHHHHHH-CCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCC
Confidence 55322 22222 22332 245566666554 599999886210 0 0 016799986
Q ss_pred -ccChhHHHHHHHHHHHhh
Q 045431 415 -FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 415 -~~~~~~l~~~l~~l~~~l 432 (433)
..+++|++++++.|++++
T Consensus 350 ~~~t~edi~~~~~~l~~~l 368 (374)
T 3uwc_A 350 PYLTEEEINYIIKKVREFY 368 (374)
T ss_dssp TTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 458999999999999876
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-25 Score=213.83 Aligned_cols=282 Identities=14% Similarity=0.089 Sum_probs=188.2
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhH----HHhCCccccccc
Q 045431 104 EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSS----VIMGQTGEFQKD 178 (433)
Q Consensus 104 ~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~~~~~ 178 (433)
..+..++|+++|+++ +.+ +.|++++| ++++++ +. ++++||+|+++.|+|++....+ +..|
T Consensus 54 ~~~~~~lr~~la~~~----g~~-~~i~~~sG-t~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G-------- 118 (393)
T 1n8p_A 54 NPNRENLERAVAALE----NAQ-YGLAFSSG-SATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAHG-------- 118 (393)
T ss_dssp CHHHHHHHHHHHHHT----TCS-EEEEESCH-HHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTTTC--------
T ss_pred ChhHHHHHHHHHHHh----CCC-cEEEECCh-HHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHHcC--------
Confidence 446789999999997 554 45555555 899987 56 8899999999999998655433 3334
Q ss_pred ccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHc----CCEEEEeccccccccCC
Q 045431 179 AEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDN----GSIIVYDSAYALYISDD 254 (433)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~----~~~li~De~~~~~~~~~ 254 (433)
.+++.++.++ ..+...+ .+++++|++++|+||||.+++ +++|.++|++| |+++|+|++|+.+...
T Consensus 119 ----~~v~~v~~~d-~~l~~~i--~~~t~lv~~~~~~nptG~~~~---l~~i~~la~~~~~~~~~~livD~a~~~~~~~- 187 (393)
T 1n8p_A 119 ----VETSFTNDLL-NDLPQLI--KENTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYIS- 187 (393)
T ss_dssp ----SCCEEESSHH-HHHHHHS--CSSEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHHC-
T ss_pred ----cEEEEeCCCh-HHHHHhc--ccCceEEEEECCCCCcceecC---HHHHHHHHHHhCCCCCCEEEEeCCccccccC-
Confidence 3677777642 2221112 257899999999999999998 88999999999 9999999999976543
Q ss_pred CCCcccccCCCCcceEEEecccccccccccce-eeeecc-ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCc
Q 045431 255 NPRSIFEIPGAKEVAIETSSFSKYAGFTGVRL-GWTVIP-KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSP 332 (433)
Q Consensus 255 ~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~-G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~ 332 (433)
.+ ..+ +.++++.|+||.+|.+|+|+ ||++++ ++++ +.+...........++..+.++...++.
T Consensus 188 ~~---~~~----~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~--------~~l~~~~~~~g~~~~~~~~~~~~~~l~~ 252 (393)
T 1n8p_A 188 NP---LNF----GADIVVHSATKYINGHSDVVLGVLATNNKPLY--------ERLQFLQNAIGAIPSPFDAWLTHRGLKT 252 (393)
T ss_dssp CG---GGG----TCSEEEEETTTTTTCSSCCCCEEEEESCHHHH--------HHHHHHHHHHCCCCCHHHHHHHHHHHTT
T ss_pred CH---HHc----CCeEEEEECcccccCCCCceeEEEEeCCHHHH--------HHHHHHHHhcCCCCCHHHHHHHHhccch
Confidence 22 222 24599999999999889999 999985 5553 5555444333333456666555555542
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHhhcC--Ce-eecC---------------C--C-ccEEEEECCCC--ChHHHHHHHH
Q 045431 333 EGFKAVHEVIGFYKENTDIIVETFNSLG--FK-VYGG---------------K--N-APYVWVQFPGR--SSWDVFSEIL 389 (433)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g--~~-~~~~---------------~--~-g~~~~~~~~~~--~~~~~~~~l~ 389 (433)
+....++..++.+.+.+.|++.. +. +..| . . +..+++.+++. ....++.. +
T Consensus 253 -----~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~l~~-l 326 (393)
T 1n8p_A 253 -----LHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASS-T 326 (393)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHH-C
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcHHHHHHHHhh-C
Confidence 34555666777778888887763 32 2111 1 2 67889999752 22223332 3
Q ss_pred HcCCeEecCCCCCC---------------------CCCCCeEEEeecc--ChhHHHHHHHHHHHhh
Q 045431 390 EKTHVVTTPGSGFG---------------------PGGEGFIRVSAFG--HRGNVLEACKRFKHLY 432 (433)
Q Consensus 390 ~~~gi~v~~g~~f~---------------------~~~~~~iRi~~~~--~~~~l~~~l~~l~~~l 432 (433)
+..++.+..|+.+. ...++.||||++. ++++++.+.++|+++.
T Consensus 327 ~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~~ 392 (393)
T 1n8p_A 327 RLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQAT 392 (393)
T ss_dssp SSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHHH
T ss_pred CcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence 33355554443211 0125789999754 5777888888887653
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-25 Score=214.84 Aligned_cols=287 Identities=15% Similarity=0.127 Sum_probs=186.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHHHHhcCCCCEEEEeCCCChhhhhhH----HHhCCccc
Q 045431 99 SGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSS----VIMGQTGE 174 (433)
Q Consensus 99 ~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l~~l~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~ 174 (433)
..| +..+..+|++++++++ +.+ ++|++++|+ +++.++..++++||+|++++|+|++....+ +..|
T Consensus 62 ~r~-~~p~~~~l~~~la~~~----g~~-~~i~~~sG~-~ai~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G---- 130 (403)
T 3cog_A 62 SRS-GNPTRNCLEKAVAALD----GAK-YCLAFASGL-AATVTITHLLKAGDQIICMDDVYGGTNRYFRQVASEFG---- 130 (403)
T ss_dssp -----CHHHHHHHHHHHHHH----TCS-EEEEESCHH-HHHHHHHTTSCTTCEEEEESSCCHHHHHHHHHTGGGGT----
T ss_pred cCC-CCchHHHHHHHHHHHh----CCC-cEEEECCHH-HHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHHcC----
Confidence 345 3456789999999998 554 778888885 788874338899999999999999865543 3445
Q ss_pred ccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcC-CEEEEeccccccccC
Q 045431 175 FQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNG-SIIVYDSAYALYISD 253 (433)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~-~~li~De~~~~~~~~ 253 (433)
.+++.++.++...+...+ .+++++|++++|+||||.+++ +++|+++|+++| +++|+|++|+.+.+.
T Consensus 131 --------~~v~~v~~~d~~~l~~~i--~~~t~~v~~~~p~nptG~~~~---l~~i~~la~~~g~~~livD~~~~~~~~~ 197 (403)
T 3cog_A 131 --------LKISFVDCSKIKLLEAAI--TPETKLVWIETPTNPTQKVID---IEGCAHIVHKHGDIILVVDNTFMSPYFQ 197 (403)
T ss_dssp --------CEEEEECTTSHHHHHHHC--CTTEEEEEEESSCTTTCCCCC---HHHHHHHHTSSSCCEEEEECTTTCTTTC
T ss_pred --------CEEEEECCCCHHHHHHhc--CcCCeEEEEECCCCCCCeeeC---HHHHHHHHHHcCCCEEEEECCCcccccC
Confidence 377777764211111111 257899999999999999998 889999999999 999999999976442
Q ss_pred CCCCcccccCCCCcceEEEecccccccccc-cceeeeecc-ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcC
Q 045431 254 DNPRSIFEIPGAKEVAIETSSFSKYAGFTG-VRLGWTVIP-KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLS 331 (433)
Q Consensus 254 ~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G-~r~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~ 331 (433)
. + +. + +.++++.|+||.++.+| .|+||++++ ++++ +.+...........+++.+.++.+.++
T Consensus 198 ~-~--~~-~----~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~--------~~l~~~~~~~g~~~~~~~~~~~~~~l~ 261 (403)
T 3cog_A 198 R-P--LA-L----GADISMYSATKYMNGHSDVVMGLVSVNCESLH--------NRLRFLQNSLGAVPSPIDCYLCNRGLK 261 (403)
T ss_dssp C-T--TT-T----TCSEEEEETTTTTTCSSCCCCEEEEECCHHHH--------HHHHHHHHHHCCCCCHHHHHHHHHHHT
T ss_pred C-c--cc-c----CCeEEEEcChhhccCCCCCeEEEEEECcHHHH--------HHHHHHHHhcCCCCCHHHHHHHHhhhh
Confidence 1 2 21 1 34699999999998666 479999986 4553 556555544445567888887777776
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHhhc---------------CCeeecCC---CccEEEEECCCCChHHHHHHHHHcCC
Q 045431 332 PEGFKAVHEVIGFYKENTDIIVETFNSL---------------GFKVYGGK---NAPYVWVQFPGRSSWDVFSEILEKTH 393 (433)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~---------------g~~~~~~~---~g~~~~~~~~~~~~~~~~~~l~~~~g 393 (433)
. +....++..++...+.+.|+++ ++.+..+. .|.++.+.+++. . +....++++.|
T Consensus 262 ~-----l~~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~-~-~~~~~~l~~~~ 334 (403)
T 3cog_A 262 T-----LHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGT-L-QHAEIFLKNLK 334 (403)
T ss_dssp T-----HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSC-H-HHHHHHHHHCS
T ss_pred H-----HHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCC-H-HHHHHHHHhCC
Confidence 3 2333444455555555655543 22222211 244555567642 2 34455566667
Q ss_pred eEecC---C----------CCCC-----------CCCCCeEEEeecc--ChhHHHHHHHHHHHhh
Q 045431 394 VVTTP---G----------SGFG-----------PGGEGFIRVSAFG--HRGNVLEACKRFKHLY 432 (433)
Q Consensus 394 i~v~~---g----------~~f~-----------~~~~~~iRi~~~~--~~~~l~~~l~~l~~~l 432 (433)
|.+.. | ..+. ...++++|||+.. ++++++.+.+.|++++
T Consensus 335 i~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~~~ 399 (403)
T 3cog_A 335 LFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAAH 399 (403)
T ss_dssp SSEECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHC
T ss_pred cceEccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 75432 2 1111 1126799999754 4666777777776654
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.6e-25 Score=213.28 Aligned_cols=280 Identities=13% Similarity=0.124 Sum_probs=189.8
Q ss_pred CCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhH----HHhCCccccccccc
Q 045431 106 GEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSS----VIMGQTGEFQKDAE 180 (433)
Q Consensus 106 g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~~~~~~~ 180 (433)
...++++.+++++ +.+ +.|++++|+ +++.+ +..++++||+|++++|+|++....+ ...|
T Consensus 115 ~~~~l~~~lA~l~----g~~-~~v~~~sG~-~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G---------- 178 (445)
T 1qgn_A 115 TTVVLEEKISALE----GAE-STLLMASGM-CASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMG---------- 178 (445)
T ss_dssp HHHHHHHHHHHHH----TCS-EEEEESCHH-HHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGT----------
T ss_pred HHHHHHHHHHHHh----CCC-cEEEeCCHH-HHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcC----------
Confidence 4458999999987 654 677777777 88886 6778999999999999999877643 3345
Q ss_pred ccceEEEeecCccCCcccCCCCCCCc-cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcc
Q 045431 181 KYGKIEYMRCTAENGFFPDLSTVART-DIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSI 259 (433)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~ 259 (433)
.+++.++.++...+...+ .+++ ++|++++|+||||.+.+ +++|.++|++||+++|+|++|+..... .++
T Consensus 179 --~~v~~v~~~d~~~l~~ai--~~~tv~lV~le~p~NptG~v~d---l~~I~~la~~~g~~livD~a~~~~~~~---~~~ 248 (445)
T 1qgn_A 179 --ITATVIDPADVGALELAL--NQKKVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLNQ---KAL 248 (445)
T ss_dssp --CEEEEECSSCHHHHHHHH--HHSCEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC---CTT
T ss_pred --CEEEEeCCCCHHHHHHHh--ccCCCCEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccC---Ccc
Confidence 367777764211111111 2467 99999999999999998 789999999999999999999854321 111
Q ss_pred cccCCCCcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHH
Q 045431 260 FEIPGAKEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAV 338 (433)
Q Consensus 260 ~~~~~~~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~ 338 (433)
.+ +..+++.|+||.+|..| +++||++++++++ +.+...........+++...++.+.++ .+
T Consensus 249 -~~----g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~--------~~l~~~~~~~g~~~~~~~a~~~~~~l~-----~l 310 (445)
T 1qgn_A 249 -AL----GADLVLHSATKFLGGHNDVLAGCISGPLKLV--------SEIRNLHHILGGALNPNAAYLIIRGMK-----TL 310 (445)
T ss_dssp -TT----TCSEEEECTTTTTTCSSSCCCEEEEECHHHH--------HHHHHHHHHHCCCCCHHHHHHHHHHGG-----GH
T ss_pred -cc----CCEEEEECCcccccccccceEEEEEECHHHH--------HHHHHHHHHhCCCCCHHHHHHHHHhHH-----HH
Confidence 11 23488999999998444 3799999988774 555544433333345555444444443 34
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-CC-eeecC----------------CCccEEEEECCCC-C-hHHHHHHHHHcCCeEecC
Q 045431 339 HEVIGFYKENTDIIVETFNSL-GF-KVYGG----------------KNAPYVWVQFPGR-S-SWDVFSEILEKTHVVTTP 398 (433)
Q Consensus 339 ~~~~~~~~~~~~~l~~~l~~~-g~-~~~~~----------------~~g~~~~~~~~~~-~-~~~~~~~l~~~~gi~v~~ 398 (433)
....++..++++.+.+.|+++ ++ .+..| ..|.++++.+++. . ...++.. ++..++.+..
T Consensus 311 ~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~~~~~~l~~-l~~~~i~~s~ 389 (445)
T 1qgn_A 311 HLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDA-LKIPYIAPSF 389 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHH-CSSSEECSCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHHHHHHHHHh-CCCceEeccC
Confidence 555566677788899999887 45 33333 1467888998752 1 2233333 3334787777
Q ss_pred CCCCCC---------------------CCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 399 GSGFGP---------------------GGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 399 g~~f~~---------------------~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
|..+.. ..++.||||+. .|+++.+++.|++++
T Consensus 390 G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG--~Edid~li~~L~~al 442 (445)
T 1qgn_A 390 GGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG--VEDFDDLKADILQAL 442 (445)
T ss_dssp CSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC--SSCHHHHHHHHHHHH
T ss_pred CCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec--cCCHHHHHHHHHHHH
Confidence 776531 12579999987 567888888888765
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.2e-26 Score=223.46 Aligned_cols=331 Identities=14% Similarity=0.118 Sum_probs=201.4
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-H
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-L 142 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l 142 (433)
..||+..+.+ . +.+.+++.+++. .+...|++..+..+|++++++++ +. +++++|+|+++++.+ +
T Consensus 42 ~ylD~~~~~~---~-~~v~~a~~~~l~-----~~~~~y~~~~~~~~l~~~la~~~----~~--~~v~~t~~gt~A~~~al 106 (467)
T 2oqx_A 42 VFIDLLTDSG---T-GAVTQSMQAAMM-----RGDEAYSGSRSYYALAESVKNIF----GY--QYTIPTHQGRGAEQIYI 106 (467)
T ss_dssp CSEECSCCSS---C-SCCCHHHHHHTT-----SCCCCSSSCHHHHHHHHHHHHHH----CC--SEEEEEC--CCSHHHHH
T ss_pred eeEecccCCC---c-HHHHHHHHHHhc-----cCcceeccCchhHHHHHHHHHHh----Cc--CcEEEcCCcHHHHHHHH
Confidence 3566654432 2 667777777764 22346877788899999999998 43 689999999999886 5
Q ss_pred HHhcCC-----C----CEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCc--cCCcccCC---CC--C---
Q 045431 143 QIVFGS-----N----VTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTA--ENGFFPDL---ST--V--- 203 (433)
Q Consensus 143 ~~l~~~-----g----d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~--~--- 203 (433)
..++++ | |+|++..+.|..+.......|...+. +. ....++.+. ......++ ++ .
T Consensus 107 ~~~~~~~~~~~G~~~~d~Ii~~~~h~~t~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~ 180 (467)
T 2oqx_A 107 PVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRN---VY---IKEAFDTGVRYDFKGNFDLEGLERGIEEVG 180 (467)
T ss_dssp HHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCEEEE---CB---CTTTTCTTSCCTTTTCBCHHHHHHHHHHHC
T ss_pred HHHhccccccCCCCccceEEecccccccchhhhhccCcceee---cc---ccccccCCCCCCccCCcCHHHHHHHHHhcC
Confidence 666777 8 99887744444444444444431110 00 000011110 01111222 21 1
Q ss_pred -CCccEEEEcCCCCcc-ccCCCHHHHHHHHHHHHHcCCEEEEeccccc----------cccCCCCCcccccC----CCCc
Q 045431 204 -ARTDIIFFCSPNNPT-GAAATREQLTRLVQFAKDNGSIIVYDSAYAL----------YISDDNPRSIFEIP----GAKE 267 (433)
Q Consensus 204 -~~~~~i~l~~p~nPt-G~~~~~~~~~~i~~~a~~~~~~li~De~~~~----------~~~~~~~~~~~~~~----~~~~ 267 (433)
+++++|++++||||| |.+++.+++++|.++|++||++||+|+++.. ..+.+ .+...+. ...|
T Consensus 181 ~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g--~~~~~~~~~~~~~~d 258 (467)
T 2oqx_A 181 PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKD--WTIEQITRETYKYAD 258 (467)
T ss_dssp GGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTT--SCHHHHHHHHGGGCS
T ss_pred CCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccC--ccHHHHhhhhhccCC
Confidence 368999999999998 8999999999999999999999999976543 12222 2222221 1123
Q ss_pred ceEEEeccccccccc-ccceeeeecccc-ccccCCcchhHHHHHHHhhc-----cCCCcHHHHHHHHHhcCcCChhHH-H
Q 045431 268 VAIETSSFSKYAGFT-GVRLGWTVIPKE-LLFSDGFPVAKDFNRIVCTC-----FNGASNISQAGGLACLSPEGFKAV-H 339 (433)
Q Consensus 268 ~vi~i~S~sK~~~~~-G~r~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~q~~~~~~l~~~~~~~~-~ 339 (433)
+++.|+||++|++ | ||++++++ ++.. ...+....... ....+.....+....++. ++ +
T Consensus 259 --~~~~s~sK~~g~~~G---g~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~----~~~~ 324 (467)
T 2oqx_A 259 --MLAMSAKKDAMVPMG---GLLCMKDDSFFDV-----YTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYD----GMNL 324 (467)
T ss_dssp --EEEEESSSTTCCSSC---EEEEECSGGGHHH-----HHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHH----TTCH
T ss_pred --eEEEecccccCCCCc---eEEEecChhHHHH-----HHHHHHhhhccCCcccccchhhhHHHHHHHhhHh----hhhH
Confidence 4578999999866 4 78888776 4300 12222221011 111122222211111111 11 2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECC----CCC-----hHHHHHHHHHcCCeEecCCCCC--CC----
Q 045431 340 EVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFP----GRS-----SWDVFSEILEKTHVVTTPGSGF--GP---- 404 (433)
Q Consensus 340 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~----~~~-----~~~~~~~l~~~~gi~v~~g~~f--~~---- 404 (433)
...++..++++.+.+.|++.|+.+. +.+++++|++++ +.+ ...+...++.++||.+.|+..| +.
T Consensus 325 ~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~ 403 (467)
T 2oqx_A 325 DWLAYRIAQVQYLVDGLEEIGVVCQ-QAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKT 403 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEE-EECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHCCCeee-cCCceEEEEechhhcccCCcccccHHHHHHHHHHhcCceecccccccccccccc
Confidence 2344556788889999988888777 678899999883 223 2334666646669999985532 11
Q ss_pred -----CCCCeEEEeec---cChhHHHHHHHHHHHhh
Q 045431 405 -----GGEGFIRVSAF---GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 405 -----~~~~~iRi~~~---~~~~~l~~~l~~l~~~l 432 (433)
.+.+++||++. .+++++++++++|++++
T Consensus 404 g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l 439 (467)
T 2oqx_A 404 GKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVK 439 (467)
T ss_dssp CSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHH
T ss_pred cccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 12479999975 78999999999999875
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-24 Score=210.67 Aligned_cols=326 Identities=9% Similarity=-0.034 Sum_probs=217.4
Q ss_pred CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCc-----EEEcCChHHHHHH-HHHhcC--
Q 045431 76 PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGD-----IFVSDGAKCDISR-LQIVFG-- 147 (433)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~-----i~~~~G~~~al~~-l~~l~~-- 147 (433)
+.++.+.+++.+++.. ...+|....+..++++++.+++.+.+++++++ +++|+|+++++.+ +..+..
T Consensus 53 ~~~~~v~e~~~~a~~~-----~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~ 127 (452)
T 2dgk_A 53 WDDENVHKLMDLSINK-----NWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRW 127 (452)
T ss_dssp CCCHHHHHHHHHTTTC-----BTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhcc-----CCCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHH
Confidence 3456788888777642 22345556688889999998888867777665 9999999999886 455443
Q ss_pred ------CC-----CEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEE
Q 045431 148 ------SN-----VTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFF 211 (433)
Q Consensus 148 ------~g-----d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l 211 (433)
+| ++|++++ +|..+...++.+| .+++.++.+++ ++..+++. .+++++|++
T Consensus 128 ~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G------------~~v~~v~~~~~-~~~~d~~~l~~~i~~~t~~v~~ 193 (452)
T 2dgk_A 128 RKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWD------------VELREIPMRPG-QLFMDPKRMIEACDENTIGVVP 193 (452)
T ss_dssp HHHHHHTTCCCSCCEEEESS-CCHHHHHHHHHTT------------CEEEECCCBTT-BCSCCHHHHHHHCCTTEEEEEC
T ss_pred HHHHHhcCCCCCCcEEEECC-CcHHHHHHHHHcC------------ceEEEEecCCC-CCeECHHHHHHHHhhCCEEEEE
Confidence 55 5999999 9999999999888 47888888651 23333221 357889999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHc------CCEEEEecccccccc---CCCCCcccccCCCCcceEEEeccccccccc
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKDN------GSIIVYDSAYALYIS---DDNPRSIFEIPGAKEVAIETSSFSKYAGFT 282 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~~------~~~li~De~~~~~~~---~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~ 282 (433)
++|+||||.+.+ +++|.++|++| ++++++|++|+.+.. .+........ .+-.++..|++|.+ ++
T Consensus 194 ~~~~n~tG~~~~---l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~---~~~d~~~~~~hK~~-~~ 266 (452)
T 2dgk_A 194 TFGVTYTGNYEF---PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRL---PRVKSISASGHKFG-LA 266 (452)
T ss_dssp BBSCTTTCBBCC---HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTS---TTEEEEEEETTTTT-CC
T ss_pred EcCCcCCcccCC---HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCC---CCCcEEEECccccc-CC
Confidence 999999999977 78888888885 999999999997643 2211111111 23346677889965 58
Q ss_pred ccceeeeecccc-ccccCCcchhHHHHH-H-----HhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHH
Q 045431 283 GVRLGWTVIPKE-LLFSDGFPVAKDFNR-I-----VCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVET 355 (433)
Q Consensus 283 G~r~G~l~~~~~-~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 355 (433)
|+++||+++++. .+.+.... ...+.. . ...+......+.+.+++..+. .+.++++.+++.++++++.+.
T Consensus 267 ~~~~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg---~~g~~~~~~~~~~~a~~l~~~ 342 (452)
T 2dgk_A 267 PLGCGWVIWRDEEALPQELVF-NVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLG---REGYTKVQNASYQVAAYLADE 342 (452)
T ss_dssp CSSCEEEEESSGGGSCGGGCE-EECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCHHHHHHHhcc-CccccCCCCCCcccCCCChhHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999754 32110000 000000 0 000111114455555555542 345688888999999999999
Q ss_pred Hhhc-CCeeecC----CCccEEEEECCCC-----ChHHHHHHHHHcCCeEecCCCCCC-CCCCCeEEEeec--cChhHHH
Q 045431 356 FNSL-GFKVYGG----KNAPYVWVQFPGR-----SSWDVFSEILEKTHVVTTPGSGFG-PGGEGFIRVSAF--GHRGNVL 422 (433)
Q Consensus 356 l~~~-g~~~~~~----~~g~~~~~~~~~~-----~~~~~~~~l~~~~gi~v~~g~~f~-~~~~~~iRi~~~--~~~~~l~ 422 (433)
|++. ++++..+ ....++.+++++. +..++...|.++ ||.+....... ..+.+++|+++. .++++++
T Consensus 343 L~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~~-Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id 421 (452)
T 2dgk_A 343 IAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLR-GWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAE 421 (452)
T ss_dssp HHTTSSEEEEEECCTTTBSSEEEEEECTTCCCSCCHHHHHHHHHHT-TCBCCEEECSTTCTTCEEEEEECCTTCCHHHHH
T ss_pred HHhCCCeEEecCCCCCCCeEEEEEEecCcccccCCHHHHHHHHHhc-CCeeeeeeCCcccCCeEEEEEEecCCCCHHHHH
Confidence 9998 5887654 3456777777642 336677776654 98654311111 123568999974 3689999
Q ss_pred HHHHHHHHhh
Q 045431 423 EACKRFKHLY 432 (433)
Q Consensus 423 ~~l~~l~~~l 432 (433)
.+++.|++++
T Consensus 422 ~li~~l~~~~ 431 (452)
T 2dgk_A 422 LLLEDYKASL 431 (452)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.7e-23 Score=200.85 Aligned_cols=329 Identities=16% Similarity=0.154 Sum_probs=203.2
Q ss_pred eEEecCCCCCCCChHHHHHHHH--HHHhhcccCCCCCCCCC--CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHH
Q 045431 65 VISLGIGDTTEPIPEVITSALA--KRSYALSTQEGYSGYGA--EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDIS 140 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~Y~~--~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~ 140 (433)
...++.|.++...|+.+.+.+. +.+.. +..|.+ ..|..++.+++.+++.+.+++++++|++++|++.++.
T Consensus 66 ~~~~~~g~~~~~~p~~v~~~~~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~i~~~~g~taa~e 139 (438)
T 1wyu_A 66 KAFLGGGVRSHHVPPVVQALAARGEFLTA------YTPYQPEVSQGVLQATFEYQTMIAELAGLEIANASMYDGATALAE 139 (438)
T ss_dssp TCCCCSSCCCCCCCHHHHHHHTSHHHHHC------CSCCSGGGCHHHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHH
T ss_pred ccccCCCccCCcCcHHHHHHHhcchhhhc------CCCCcchhhhhHHHHHHHHHHHHHHHhCCCccceEEeCcHHHHHH
Confidence 4567788877777777644442 22221 122321 3454444444444444433778889999999995544
Q ss_pred HH-HH-hcCCCCEEEEeCCCChhhhhhHHH----hCCcccccccccccceEEEeecCccCCcccCCCC-CCCccEEEEcC
Q 045431 141 RL-QI-VFGSNVTMAVQDPSYPAYVDSSVI----MGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-VARTDIIFFCS 213 (433)
Q Consensus 141 ~l-~~-l~~~gd~Vl~~~p~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~l~~ 213 (433)
++ .. .+++||+|++++|+|+.+...++. .| .+++.++.+ ++ ..+++. .+++++|++++
T Consensus 140 a~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G------------~~v~~v~~~-~~--~~d~~~i~~~t~~v~i~~ 204 (438)
T 1wyu_A 140 GVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVG------------AKLLTLPLE-GG--RTPLPEVGEEVGAVVVQN 204 (438)
T ss_dssp HHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTT------------CEEEEECCB-TT--BCCCCCCCTTEEEEEEES
T ss_pred HHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHCC------------CEEEEEcCc-CC--ccCHHHhCCCeEEEEEEC
Confidence 32 22 357899999999999998866643 56 477777762 22 223222 35789999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCCEEEEecc-ccccccCCCCCcccccCCCCcceEEEeccccccc----ccccceee
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSA-YALYISDDNPRSIFEIPGAKEVAIETSSFSKYAG----FTGVRLGW 288 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~-~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~----~~G~r~G~ 288 (433)
| ||||.+.+ +++|.++|+++|+++|+|.. .+ +... ..+ ..+. ..++++| +|.|| +.|.++||
T Consensus 205 p-n~tG~~~~---l~~i~~la~~~g~~vivd~d~~a-~g~~--~~~-~~~g----~D~~~~s-~kk~~~~~~~~Gp~~G~ 271 (438)
T 1wyu_A 205 P-NFLGALED---LGPFAEAAHGAGALFVAVADPLS-LGVL--KPP-GAYG----ADIAVGD-GQSLGLPMGFGGPHFGF 271 (438)
T ss_dssp S-CTTSBCCC---HHHHHHHHHHTTCEEEEECCTTG-GGTB--CCH-HHHT----CSEEEEE-CTTTTCCCGGGCSCCEE
T ss_pred C-CCCeEEec---HHHHHHHHHHcCCEEEEEechhh-ccCc--CCC-ccCC----CCEEEEC-CcccCCCccCCCCCeeE
Confidence 9 99999986 88999999999999996632 22 1111 111 2221 1266666 66543 56778999
Q ss_pred eeccccccccCCcch-------------------hHHHHHHHhhccCC--CcHHHHHHHHHhcCcCChhHHHHHHHHHHH
Q 045431 289 TVIPKELLFSDGFPV-------------------AKDFNRIVCTCFNG--ASNISQAGGLACLSPEGFKAVHEVIGFYKE 347 (433)
Q Consensus 289 l~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 347 (433)
++++++++..-.... .+...+......+. .+.+...++..++...+.+.++++.+++++
T Consensus 272 l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~ 351 (438)
T 1wyu_A 272 LATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVE 351 (438)
T ss_dssp EEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 999988753210000 00111111111111 122222222222321222456888899999
Q ss_pred HHHHHHHHHhhc-CCeeecCCCccEE--EEECCCCChHHHHHHHHHcCCeEe--cCCCCCCCCCCCeEEEeec--cChhH
Q 045431 348 NTDIIVETFNSL-GFKVYGGKNAPYV--WVQFPGRSSWDVFSEILEKTHVVT--TPGSGFGPGGEGFIRVSAF--GHRGN 420 (433)
Q Consensus 348 ~~~~l~~~l~~~-g~~~~~~~~g~~~--~~~~~~~~~~~~~~~l~~~~gi~v--~~g~~f~~~~~~~iRi~~~--~~~~~ 420 (433)
+++++.+.|++. |+++..+. .++. .+.++ .+..++...|.++ ||.+ .++..|. ++++|+++. .+.++
T Consensus 352 ~~~~l~~~L~~~~g~~~~~~~-~~~~~~~~~~~-~~~~~~~~~L~~~-gi~v~~~~~~~~~---~~~lRis~~~~~t~ed 425 (438)
T 1wyu_A 352 MAHKLHALLLEVPGVRPFTPK-PFFNEFALALP-KDPEAVRRALAER-GFHGATPVPREYG---ENLALFAATELHEEED 425 (438)
T ss_dssp HHHHHHHHHTTSTTCEECSCS-SBCSEEEEECS-SCHHHHHHHHHHT-TCCCCEECCTTSC---SSEEEEECCTTCCHHH
T ss_pred HHHHHHHHHhcCCCeEECCCC-CeEEEEEEeCC-CCHHHHHHHHHHC-CceeccccccccC---CCeEEEEecccCCHHH
Confidence 999999999998 99887653 3333 34443 4567777777765 9999 6776654 579999975 68999
Q ss_pred HHHHHHHHHHhhC
Q 045431 421 VLEACKRFKHLYK 433 (433)
Q Consensus 421 l~~~l~~l~~~l~ 433 (433)
+++++++|+++++
T Consensus 426 i~~~~~~l~~~l~ 438 (438)
T 1wyu_A 426 LLALREALKEVLA 438 (438)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998763
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-23 Score=201.28 Aligned_cols=301 Identities=14% Similarity=0.105 Sum_probs=200.2
Q ss_pred ChHHHHHHHHHHHhhcccCCCCCCCCCCCC--CHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHh-cCCCCEE
Q 045431 77 IPEVITSALAKRSYALSTQEGYSGYGAEQG--EKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIV-FGSNVTM 152 (433)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g--~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l-~~~gd~V 152 (433)
.++++.+++.+.+.. .|.+..| ..+||+++|+++ +. ++|++|+|+++++.+ +..+ +++||+|
T Consensus 10 ~~~~v~~a~~~~~~~--------~~~~~~g~~~~~l~~~la~~~----~~--~~v~~~~ggt~al~~~~~~l~~~~gd~V 75 (394)
T 1o69_A 10 MGGNELKYIEEVFKS--------NYIAPLGEFVNRFEQSVKDYS----KS--ENALALNSATAALHLALRVAGVKQDDIV 75 (394)
T ss_dssp --CCHHHHHHHHHHH--------TTTSCTTHHHHHHHHHHHHHH----CC--SEEEEESCHHHHHHHHHHHTTCCTTCEE
T ss_pred CCHHHHHHHHHHHHc--------CCccCCChHHHHHHHHHHHHh----CC--CcEEEeCCHHHHHHHHHHHcCCCCCCEE
Confidence 345677788877753 2545557 899999999998 44 789999999999997 5777 7999999
Q ss_pred EEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CC---CccEEEEcCCCCccccCCCHHH
Q 045431 153 AVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VA---RTDIIFFCSPNNPTGAAATREQ 226 (433)
Q Consensus 153 l~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~---~~~~i~l~~p~nPtG~~~~~~~ 226 (433)
++++|+|+++...+...| .+++.++.+.+..++.+ +++ .+ ++++|++++ |||...+
T Consensus 76 l~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~--- 137 (394)
T 1o69_A 76 LASSFTFIASVAPICYLK------------AKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH---LYGNAAK--- 137 (394)
T ss_dssp EEESSSCGGGTHHHHHTT------------CEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCC---
T ss_pred EECCCccHHHHHHHHHcC------------CEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC---CCCChhh---
Confidence 999999999999998888 47888887632222211 211 12 688888875 8997655
Q ss_pred HHHHHHHHHHcCCEEEEecccc-ccccCCCCCcccccCCCCcceEEEecc--cccccccccceeeeecc-ccccccCCcc
Q 045431 227 LTRLVQFAKDNGSIIVYDSAYA-LYISDDNPRSIFEIPGAKEVAIETSSF--SKYAGFTGVRLGWTVIP-KELLFSDGFP 302 (433)
Q Consensus 227 ~~~i~~~a~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~vi~i~S~--sK~~~~~G~r~G~l~~~-~~~~~~~~~~ 302 (433)
+++|.++|+++|+++|+|++|+ ++.+.+.. ...+ .+ +.+.|| +|.+ +|.|+||++++ ++++
T Consensus 138 l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~--~~~~---~~--~~~~s~s~~K~l--~~~~~G~~~~~~~~l~------ 202 (394)
T 1o69_A 138 MDEIVEICKENDIVLIEDAAEALGSFYKNKA--LGTF---GE--FGVYSYNGNKII--TTSGGGMLIGKNKEKI------ 202 (394)
T ss_dssp HHHHHHHHHHTTCEEEEECTTCTTCEETTEE--TTSS---SS--EEEEECCTTSSS--CCSSCEEEEESCHHHH------
T ss_pred HHHHHHHHHHcCCEEEEECcCcccceeCCcc--cccc---cC--cEEEEEeCCccC--CCCCceEEEECCHHHH------
Confidence 8899999999999999999999 45443321 1111 12 445556 5655 56799999996 5653
Q ss_pred hhHHHHHHHhhccCC--------------CcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCC-
Q 045431 303 VAKDFNRIVCTCFNG--------------ASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGK- 367 (433)
Q Consensus 303 ~~~~~~~~~~~~~~~--------------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~- 367 (433)
+.+.......... .+.+...++...+ +++++..++++++++++.+.|++. +.+.++.
T Consensus 203 --~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l-----~~l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~ 274 (394)
T 1o69_A 203 --EKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQM-----EVLEQRVLKKREIYEWYKEFLGEY-FSFLDELE 274 (394)
T ss_dssp --HHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHHHHTTT-EECCCCCT
T ss_pred --HHHHHHHHhccccCccccccccCcccCcCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccc-ccccCCCC
Confidence 4454432211100 2223333332222 235667888899999999999887 6655432
Q ss_pred ---Ccc-EEEEECCCC----------------------ChHHHHHHHHHcCCeEecCCCCC---CCCCC-----------
Q 045431 368 ---NAP-YVWVQFPGR----------------------SSWDVFSEILEKTHVVTTPGSGF---GPGGE----------- 407 (433)
Q Consensus 368 ---~g~-~~~~~~~~~----------------------~~~~~~~~l~~~~gi~v~~g~~f---~~~~~----------- 407 (433)
.++ .+++.++.. +..++...|. ++||.+++|..+ .+.-.
T Consensus 275 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~ 353 (394)
T 1o69_A 275 NSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLK-NKQIETRPLWKAMHTQEVFKGAKAYLNGNSE 353 (394)
T ss_dssp TEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHH-HTTCCCBCCCCCGGGCGGGTTCEEEECSHHH
T ss_pred CCcceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHH-HcCCcccccCCccccchhhhccCCCCChHHH
Confidence 232 367777632 3445665554 569999998532 11000
Q ss_pred ----CeEEEee--ccChhHHHHHHHHHHHhhC
Q 045431 408 ----GFIRVSA--FGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 408 ----~~iRi~~--~~~~~~l~~~l~~l~~~l~ 433 (433)
..+|+.+ +.+++|++.+++.|+++++
T Consensus 354 ~~~~~~~~~~~~~~~t~edi~~~~~~l~~~~~ 385 (394)
T 1o69_A 354 LFFQKGICLPSGTAMSKDDVYEISKLILKSIK 385 (394)
T ss_dssp HHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred HHhcCeEEccCCCCCCHHHHHHHHHHHHHHHh
Confidence 2344443 4689999999999998763
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.8e-24 Score=204.51 Aligned_cols=302 Identities=10% Similarity=0.053 Sum_probs=195.9
Q ss_pred HHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHHHHhcCCCCEEEEeCCCChhhh--hhHHHhCCcccccccccccceEE
Q 045431 109 PLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYV--DSSVIMGQTGEFQKDAEKYGKIE 186 (433)
Q Consensus 109 ~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l~~l~~~gd~Vl~~~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~ 186 (433)
++.+++++.+.+.++++ +.|++|+|++++++++..++.+||+|++.+++|++.. ...+..|.. .+++
T Consensus 35 ~~~~~~~~~l~~~~~~~-~~v~~~~sgt~a~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~----------~~~~ 103 (379)
T 3ke3_A 35 EVMNDLLSNLKTVYNAE-AAVIIPGSGTYGMEAVARQLTIDEDCLIIRNGWFSYRWTQILEKGKFA----------KSST 103 (379)
T ss_dssp HHHHHHHHHHHHHHTCS-EEEEEESCHHHHHHHHHHHHCTTCEEEEEECSHHHHHHHHHHHHHCCS----------SEEE
T ss_pred HHHHHHHHHHHHHhCCC-CEEEEcCChhHHHHHHHHhCCCCCeEEEEeCCchhHHHHHHHHHhCCC----------CceE
Confidence 44444444444433666 7899999999999986566789999999999998753 233444421 1455
Q ss_pred EeecCccC------Cc-ccCCCC------CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccC
Q 045431 187 YMRCTAEN------GF-FPDLST------VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISD 253 (433)
Q Consensus 187 ~~~~~~~~------~~-~~~~~~------~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~ 253 (433)
.++.+..+ .+ ..+++. ..++++|++++++||||.+++.+++++|.++|++||+++|+|++++ .
T Consensus 104 ~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g--- 179 (379)
T 3ke3_A 104 VLTAERTEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-G--- 179 (379)
T ss_dssp EEECEESSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-T---
T ss_pred EEeccccccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-C---
Confidence 55543211 00 122221 1378898888999999999999999999999999999999999976 2
Q ss_pred CCCCcccccCCCCcceEEEecccccccccccceeeeecccccccc----CCcchh---HHHH----HHHhh---ccCCCc
Q 045431 254 DNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFS----DGFPVA---KDFN----RIVCT---CFNGAS 319 (433)
Q Consensus 254 ~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~----~~~~~~---~~~~----~~~~~---~~~~~~ 319 (433)
+.+..+... +..+++.|++|+++ ++.++|+++++++++.. ....+. ..+. .+... ...+.+
T Consensus 180 ~~~~~~~~~----~~d~~~~s~~K~l~-~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~ 254 (379)
T 3ke3_A 180 CVWLDMKEL----GIDVLISAPQKGWS-STPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMP 254 (379)
T ss_dssp TCCCCHHHH----TCSEEEECTTTTTC-SCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCC
T ss_pred Ccccccccc----CCCEEEecchhhcC-CCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCC
Confidence 223333332 22488899999986 54568999999877421 000000 0011 11111 112456
Q ss_pred HHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCC--cc-EEEEECCCCChHHHHHHHHHcCCeEe
Q 045431 320 NISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKN--AP-YVWVQFPGRSSWDVFSEILEKTHVVT 396 (433)
Q Consensus 320 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~--g~-~~~~~~~~~~~~~~~~~l~~~~gi~v 396 (433)
...+.++.++++......+++++++++++++++.+.|+++|+.+..+.. +. ...+..++ ...... ..+.++||.+
T Consensus 255 ~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~~~-~~L~~~Gi~v 332 (379)
T 3ke3_A 255 TDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDKGIESVAAEGFEAPGVVVSYTER-DDMHKG-SAFAEAGLQI 332 (379)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSBCTTCBCSSEEEEECSC-HHHHSS-HHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCEecCCccccCceEEEEccCC-cchHHH-HHHHHCCeEE
Confidence 6666655555542111235788889999999999999999888765432 23 33334332 112223 3445669999
Q ss_pred cCCCCCC---CCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 397 TPGSGFG---PGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 397 ~~g~~f~---~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
.+|..+. +...+.+|+++ +.+++++++++++|++++
T Consensus 333 ~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l 373 (379)
T 3ke3_A 333 AAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKAL 373 (379)
T ss_dssp EECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHH
T ss_pred eCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHH
Confidence 9998654 22367899996 458999999999998875
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.7e-23 Score=197.97 Aligned_cols=303 Identities=12% Similarity=0.047 Sum_probs=198.9
Q ss_pred ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHh-cCCCCEEEE
Q 045431 77 IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIV-FGSNVTMAV 154 (433)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l-~~~gd~Vl~ 154 (433)
.++.+.+++.+.+.. . .|.+..+..++|+++++++ +. +++++++|+++++.+ +..+ +++||+|++
T Consensus 15 ~~~~~~~a~~~~~~~----~---~~~~~~~~~~l~~~la~~~----~~--~~~i~~~sgt~al~~~l~~l~~~~gd~Vi~ 81 (373)
T 3frk_A 15 IEYEIKFKFEEIYKR----N---WFILGDEDKKFEQEFADYC----NV--NYCIGCGNGLDALHLILKGYDIGFGDEVIV 81 (373)
T ss_dssp HHHHHHHHHHHHHHH----T---CCSSSHHHHHHHHHHHHHH----TS--SEEEEESCHHHHHHHHHHHTTCCTTCEEEE
T ss_pred CCHHHHHHHHHHHHC----C---CccCCchHHHHHHHHHHHh----CC--CeEEEeCCHHHHHHHHHHHcCCCCcCEEEE
Confidence 356677777777653 1 3556778999999999998 54 488999999999987 6777 899999999
Q ss_pred eCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC---CCC--CCCccEEEEcCCCCccccCCCHHHHHH
Q 045431 155 QDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD---LST--VARTDIIFFCSPNNPTGAAATREQLTR 229 (433)
Q Consensus 155 ~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~i~l~~p~nPtG~~~~~~~~~~ 229 (433)
+.|+|+++...++..| .+++.++.+++. +..+ +++ .+++++|+ |+||||...+ +++
T Consensus 82 ~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~-~~~d~~~l~~~l~~~~~~v~---~~n~~G~~~~---l~~ 142 (373)
T 3frk_A 82 PSNTFIATALAVSYTG------------AKPIFVEPDIRT-YNIDPSLIESAITEKTKAII---AVHLYGQPAD---MDE 142 (373)
T ss_dssp ETTSCTHHHHHHHHHS------------CEEEEECEETTT-TEECGGGTGGGCCTTEEEEE---EECCTTCCCC---HHH
T ss_pred CCCCcHHHHHHHHHcC------------CEEEEEeccccc-cCcCHHHHHHhcCCCCeEEE---EECCCcCccc---HHH
Confidence 9999999999998888 477788876432 2222 222 24677766 6789999877 778
Q ss_pred HHHHHHHcCCEEEEeccccccc-cCCCCCcccccCCCCcceEEEeccc--ccccccccceeeeeccccccccCCcchhHH
Q 045431 230 LVQFAKDNGSIIVYDSAYALYI-SDDNPRSIFEIPGAKEVAIETSSFS--KYAGFTGVRLGWTVIPKELLFSDGFPVAKD 306 (433)
Q Consensus 230 i~~~a~~~~~~li~De~~~~~~-~~~~~~~~~~~~~~~~~vi~i~S~s--K~~~~~G~r~G~l~~~~~~~~~~~~~~~~~ 306 (433)
|.++|++||+++|+|++|+... +++. .+..+ .| +++.||| |.++..| +.|++++++..+ .+.
T Consensus 143 i~~l~~~~~~~li~D~a~~~g~~~~~~--~~~~~---~d--~~~~S~~~~K~l~~~g-~gg~~~~~~~~~-------~~~ 207 (373)
T 3frk_A 143 IKRIAKKYNLKLIEDAAQAHGSLYKGM--KVGSL---GD--AAGFSFYPAKNLGSLG-DGGAVVTNDKDL-------AEK 207 (373)
T ss_dssp HHHHHHHHTCEEEEECTTCTTCEETTE--ETTSS---SS--EEEEECCTTSSSCCSS-SCEEEEESCHHH-------HHH
T ss_pred HHHHHHHcCCEEEEECCcccCCEECCE--ecccc---cc--EEEEeCcCCCccCccc-eeEEEEeCCHHH-------HHH
Confidence 9999999999999999998532 2221 11111 22 7788877 9886225 478888876533 244
Q ss_pred HHHHHhhc------------cCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecC-CCccEEE
Q 045431 307 FNRIVCTC------------FNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGG-KNAPYVW 373 (433)
Q Consensus 307 ~~~~~~~~------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~g~~~~ 373 (433)
+....... ....+.+..++....+ +.+++..++.++..+.+.+.|++.++.+... ..+...|
T Consensus 208 ~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 282 (373)
T 3frk_A 208 IKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKL-----KYLDKWNEERRKIAQKYIAGINNPNVIIPVEADYAKHVW 282 (373)
T ss_dssp HHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHH-----HTHHHHHHHHHHHHHHHHHHCCCTTEECCCCCTTEECCC
T ss_pred HHHHHhcCcccCCccccccccCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccCceEeccCCCCCceee
Confidence 44333211 1112344433322222 2346667777788888888888776443221 1221111
Q ss_pred --EECCCCChHHHHHHHHHcCCeEecCCCCCCC------------CC---------CCeEEEee--ccChhHHHHHHHHH
Q 045431 374 --VQFPGRSSWDVFSEILEKTHVVTTPGSGFGP------------GG---------EGFIRVSA--FGHRGNVLEACKRF 428 (433)
Q Consensus 374 --~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~------------~~---------~~~iRi~~--~~~~~~l~~~l~~l 428 (433)
+.+...+..++...|.+ +||.+.++..... .+ .+.+|+++ ..+++|++..++.|
T Consensus 283 ~~~~~~~~~~~~l~~~L~~-~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l 361 (373)
T 3frk_A 283 YTFVIRSEKRDELQKYLNN-NGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKI 361 (373)
T ss_dssp SSEEEEESSHHHHHHHHHH-TTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHH
T ss_pred EEEEEEeCCHHHHHHHHHH-CCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHH
Confidence 12222245566666655 5999987752110 00 15799996 45899999999999
Q ss_pred HHhh
Q 045431 429 KHLY 432 (433)
Q Consensus 429 ~~~l 432 (433)
+++.
T Consensus 362 ~~~~ 365 (373)
T 3frk_A 362 NAWK 365 (373)
T ss_dssp HTCC
T ss_pred HHHh
Confidence 8764
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-22 Score=192.54 Aligned_cols=301 Identities=15% Similarity=0.150 Sum_probs=203.3
Q ss_pred ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHh-cCCCCEEEE
Q 045431 77 IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIV-FGSNVTMAV 154 (433)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l-~~~gd~Vl~ 154 (433)
.++.+.+++.+.+.. ..|.+..+..++++++++++ +.+ ++++++|+++++.+ +..+ +++||+|++
T Consensus 14 ~~~~v~~a~~~~~~~-------~~~~~~~~~~~l~~~la~~~----~~~--~~~~~~sGt~al~~al~~~~~~~gd~Vi~ 80 (367)
T 3nyt_A 14 IKDKIDAGIQRVLRH-------GQYILGPEVTELEDRLADFV----GAK--YCISCANGTDALQIVQMALGVGPGDEVIT 80 (367)
T ss_dssp HHHHHHHHHHHHHHH-------CCCSSCHHHHHHHHHHHHHH----TCS--EEEEESCHHHHHHHHHHHTTCCTTCEEEE
T ss_pred cCHHHHHHHHHHHhc-------CCccCChHHHHHHHHHHHHh----CCC--cEEEeCCHHHHHHHHHHHhCCCCcCEEEE
Confidence 456777777776653 13556678899999999998 543 78999999999987 5667 799999999
Q ss_pred eCCCChhhhhhHHHhCCcccccccccccceEEEeecCccC-CcccC-CCC--CCCccEEEEcCCCCccccCCCHHHHHHH
Q 045431 155 QDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAEN-GFFPD-LST--VARTDIIFFCSPNNPTGAAATREQLTRL 230 (433)
Q Consensus 155 ~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~--~~~~~~i~l~~p~nPtG~~~~~~~~~~i 230 (433)
+.|+|+++...+...| .+++.++.+++. .++.+ +++ .+++++|+ |+||||...+ +++|
T Consensus 81 ~~~~~~~~~~~~~~~G------------~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~---~~~~~G~~~~---~~~i 142 (367)
T 3nyt_A 81 PGFTYVATAETVALLG------------AKPVYVDIDPRTYNLDPQLLEAAITPRTKAII---PVSLYGQCAD---FDAI 142 (367)
T ss_dssp ESSSCTHHHHHHHHTT------------CEEEEECBCTTTCSBCGGGTGGGCCTTEEEEC---CBCGGGCCCC---HHHH
T ss_pred CCCccHHHHHHHHHcC------------CEEEEEecCCccCCcCHHHHHHhcCcCCcEEE---eeCCccChhh---HHHH
Confidence 9999999999999888 478888887542 22222 222 25677666 7889998776 8889
Q ss_pred HHHHHHcCCEEEEeccccc-cccCCCCCcccccCCCCcceEEEecc--cccccccccceeeeeccccccccCCcchhHHH
Q 045431 231 VQFAKDNGSIIVYDSAYAL-YISDDNPRSIFEIPGAKEVAIETSSF--SKYAGFTGVRLGWTVIPKELLFSDGFPVAKDF 307 (433)
Q Consensus 231 ~~~a~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~~~vi~i~S~--sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~ 307 (433)
.++|++||+++|+|++|+. ..+.+. .+..+ . .+++.|| +|.++.+|. .|++++++..+ .+.+
T Consensus 143 ~~la~~~~~~li~D~a~~~g~~~~~~--~~~~~---~--di~~~Sf~~~K~l~~~g~-gg~~~~~~~~l-------~~~~ 207 (367)
T 3nyt_A 143 NAIASKYGIPVIEDAAQSFGASYKGK--RSCNL---S--TVACTSFFPSAPLGCYGD-GGAIFTNDDEL-------ATAI 207 (367)
T ss_dssp HHHHHHTTCCBEEECTTTTTCEETTE--ETTSS---S--SEEEEECCTTSSSCCSSC-CEEEEESCHHH-------HHHH
T ss_pred HHHHHHcCCEEEEECccccCCeECCe--eccCC---C--CEEEEECCCCCcCCCcCc-eeEEEeCCHHH-------HHHH
Confidence 9999999999999999985 223321 11112 1 3778887 899984476 88988865443 2444
Q ss_pred HHHHhh------------ccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecC-CC---c-c
Q 045431 308 NRIVCT------------CFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGG-KN---A-P 370 (433)
Q Consensus 308 ~~~~~~------------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~---g-~ 370 (433)
...... .....+.+.++++...++ .+++..++.++..+++.+.|++.++.+... .+ . .
T Consensus 208 ~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~-----~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~ 282 (367)
T 3nyt_A 208 RQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLE-----IFEEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYA 282 (367)
T ss_dssp HHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHH-----THHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCS
T ss_pred HHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeE
Confidence 443321 123355555555554443 235666677778888888998877554322 11 1 2
Q ss_pred EEEEECCCCChHHHHHHHHHcCCeEecCCCCCC-------C-C----------CCCeEEEeec--cChhHHHHHHHHHHH
Q 045431 371 YVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFG-------P-G----------GEGFIRVSAF--GHRGNVLEACKRFKH 430 (433)
Q Consensus 371 ~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~-------~-~----------~~~~iRi~~~--~~~~~l~~~l~~l~~ 430 (433)
.+++.++ +..++...|.+ +||.++++.... . . ....+||++. .+++|++..++.|++
T Consensus 283 ~~~~~~~--~~~~l~~~L~~-~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~ 359 (367)
T 3nyt_A 283 QYTVRMD--NRESVQASLKA-AGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTN 359 (367)
T ss_dssp SEEEECS--SHHHHHHHHHH-HTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC
T ss_pred EEEEEeC--CHHHHHHHHHH-CCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHH
Confidence 2445554 45566666554 599998765310 0 0 0246899963 489999999999875
Q ss_pred h
Q 045431 431 L 431 (433)
Q Consensus 431 ~ 431 (433)
.
T Consensus 360 ~ 360 (367)
T 3nyt_A 360 L 360 (367)
T ss_dssp -
T ss_pred H
Confidence 3
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-26 Score=224.30 Aligned_cols=337 Identities=12% Similarity=0.046 Sum_probs=216.3
Q ss_pred HHHHHHhcCCCCceEEecCCCCC--C-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCc
Q 045431 52 RKAAHMLKYPDAEVISLGIGDTT--E-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGD 128 (433)
Q Consensus 52 ~~~~~~~~~~~~~~i~l~~g~~~--~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~ 128 (433)
..+......+++..|||..|... + ..+|.+.+++.+++.+. ....| +.....+|.+.|++++ + ..+.
T Consensus 89 ~~G~~l~D~dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~----~~~~~-~~~~~~~Lae~L~~~~----p-~~~~ 158 (465)
T 2yky_A 89 GTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVG----LNLST-QTENEALFAEAVCDRF----P-SIDL 158 (465)
Confidence 34444445567789999888753 2 25789999999988652 12234 4445667777777765 4 5688
Q ss_pred EEEcCChHHHHHHHHHh---cCCCCEEEEeCCCChhhhhhHHHhC--CcccccccccccceEEEeecCccCCcccCCCCC
Q 045431 129 IFVSDGAKCDISRLQIV---FGSNVTMAVQDPSYPAYVDSSVIMG--QTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV 203 (433)
Q Consensus 129 i~~~~G~~~al~~l~~l---~~~gd~Vl~~~p~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (433)
+++++++++++.....+ ...+++|++.+++|++...... .| ..++ . ..+..++.++...+...+.+.
T Consensus 159 v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~-sg~~~~g~------~-~~~~~~~~~d~~~l~~~l~~~ 230 (465)
T 2yky_A 159 VRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFA-SGHAPTNA------P-YHVVLGVYNDVEGTADLLKRH 230 (465)
Confidence 99999999999864333 2456999999999988654333 22 0011 0 022333332211111112211
Q ss_pred -CCccEEEEcCCCCccccCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccc
Q 045431 204 -ARTDIIFFCSPNNPTGAAA-TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGF 281 (433)
Q Consensus 204 -~~~~~i~l~~p~nPtG~~~-~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~ 281 (433)
+++++|++...+++||.+. +.+.+++|.++|++||+++|+||+|. +.. +.......+ +....+.||||.+|
T Consensus 231 ~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~-g~~~a~~~~----gv~pDi~t~sK~lg- 303 (465)
T 2yky_A 231 GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRL-SGGGAQEML----GISADLTTLGKYIG- 303 (465)
Confidence 4677766543366699655 68899999999999999999999999 632 222111111 11233558999998
Q ss_pred cccceeeeeccccccccCCcchhHHHHH-----HHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHH
Q 045431 282 TGVRLGWTVIPKELLFSDGFPVAKDFNR-----IVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETF 356 (433)
Q Consensus 282 ~G~r~G~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l 356 (433)
+|+|+||++++++++ +.+.. .....+.+.++++|+++.+.|+.... +.+.++++++.+++.+.|
T Consensus 304 ~G~piG~v~~~~~i~--------~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~---~~~~~~~~~~~~~l~~~L 372 (465)
T 2yky_A 304 GGMSFGAFGGRRDLM--------ERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYT---RQAASDLSASGDRFRANL 372 (465)
Confidence 699999999999886 33433 23344556789999988888863222 345566666666666666
Q ss_pred hhc----CCeeecCCCccEEEEECCC-C-------------ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccCh
Q 045431 357 NSL----GFKVYGGKNAPYVWVQFPG-R-------------SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHR 418 (433)
Q Consensus 357 ~~~----g~~~~~~~~g~~~~~~~~~-~-------------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~ 418 (433)
++. ++....+..|.++|+.++. . ....++..+++ +||.+.|+. |. . +++..++
T Consensus 373 ~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~-~GV~v~p~~-~~----~---~s~~~t~ 443 (465)
T 2yky_A 373 NRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLR-KGIYLAPRG-MY----A---LSLEIAD 443 (465)
Confidence 554 3322233467888888763 1 12356666665 599999875 21 1 6777899
Q ss_pred hHHHHHHHHHHHhhC
Q 045431 419 GNVLEACKRFKHLYK 433 (433)
Q Consensus 419 ~~l~~~l~~l~~~l~ 433 (433)
+++++++++|+++++
T Consensus 444 edid~~l~~l~~~l~ 458 (465)
T 2yky_A 444 AGRDAFAEALADFIG 458 (465)
Confidence 999999999988753
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=9e-23 Score=197.03 Aligned_cols=286 Identities=11% Similarity=0.067 Sum_probs=185.1
Q ss_pred CCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHH-hCCccccccccccc
Q 045431 105 QGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVI-MGQTGEFQKDAEKY 182 (433)
Q Consensus 105 ~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~-~g~~~~~~~~~~~~ 182 (433)
....+|++.+|+++ +. +++++++|+++++.+ +..++++||+|+++.|.|.+....+.. +...+
T Consensus 82 p~~~~le~~lA~l~----g~--~~~i~~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G--------- 146 (415)
T 2fq6_A 82 LTHFSLQQAMCELE----GG--AGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLG--------- 146 (415)
T ss_dssp HHHHHHHHHHHHHH----TC--SEEEEESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGT---------
T ss_pred chHHHHHHHHHHHh----CC--CeEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcC---------
Confidence 34567999999987 54 356666788899987 677889999999999999987765532 11112
Q ss_pred ceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHH--cCCEEEEeccccccccCCCCCccc
Q 045431 183 GKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKD--NGSIIVYDSAYALYISDDNPRSIF 260 (433)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~--~~~~li~De~~~~~~~~~~~~~~~ 260 (433)
.++..++.++.+.+...+ .+++++|++++|+||||.+++ +++|+++|++ +|+++|+|++|+..... .++
T Consensus 147 ~~v~~v~~~d~~~le~ai--~~~tklV~~e~~~NptG~v~d---l~~I~~la~~~~~g~~livD~a~a~~~~~---~p~- 217 (415)
T 2fq6_A 147 VTTSWFDPLIGADIVKHL--QPNTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVLF---KAL- 217 (415)
T ss_dssp CEEEEECTTCGGGGGGGC--CTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTSS---CGG-
T ss_pred cEEEEECCCCHHHHHHhh--ccCCcEEEEECCCCCCCEeec---HHHHHHHHHhhcCCCEEEEECCCcccccC---Ccc-
Confidence 367777664222221112 257899999999999999998 7899999999 99999999999854221 122
Q ss_pred ccCCCCcceEEEecccccccccccc-eeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHH
Q 045431 261 EIPGAKEVAIETSSFSKYAGFTGVR-LGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVH 339 (433)
Q Consensus 261 ~~~~~~~~vi~i~S~sK~~~~~G~r-~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~ 339 (433)
.+ +..+++.|+||.++.+|.+ .||++++++++ +.+...........++.....+...+ +.+.
T Consensus 218 ~~----g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~--------~~l~~~~~~~G~~~~~~~a~~~~~~l-----~~l~ 280 (415)
T 2fq6_A 218 DF----GIDVSIQAATKYLVGHSDAMIGTAVCNARCW--------EQLRENAYLMGQMVDADTAYITSRGL-----RTLG 280 (415)
T ss_dssp GG----TCSEEEEETTTTTTCSSSCCCEEEEECTTTH--------HHHHHHHHHTTCCCCHHHHHHHHHHH-----HHHH
T ss_pred cc----CCeEEEEeCccccCCCCCceEEEEEeCHHHH--------HHHHHHHHhcCCCCCHHHHHHHHhhh-----hHHH
Confidence 22 2348999999999877755 58999887764 55554433222333444333333322 3445
Q ss_pred HHHHHHHHHHHHHHHHHhhc-CCe-eecC----------------CCccEEEEECCCCChHHHHHHHHH---cCCeEecC
Q 045431 340 EVIGFYKENTDIIVETFNSL-GFK-VYGG----------------KNAPYVWVQFPGRSSWDVFSEILE---KTHVVTTP 398 (433)
Q Consensus 340 ~~~~~~~~~~~~l~~~l~~~-g~~-~~~~----------------~~g~~~~~~~~~~~~~~~~~~l~~---~~gi~v~~ 398 (433)
...++..++.+.+.+.|++. .+. +..| ..+..+++.+++....+....++. ..++.+..
T Consensus 281 ~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~~~~~l~~l~~~~~a~s~ 360 (415)
T 2fq6_A 281 VRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSW 360 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCSSCEECSCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHHHHHHHHhCCcCeEeccC
Confidence 56666778888888888876 332 2111 146678899875311112223332 33455555
Q ss_pred CCCCC-------------------CCCCCeEEEeecc--ChhHHHHHHHHHHHh
Q 045431 399 GSGFG-------------------PGGEGFIRVSAFG--HRGNVLEACKRFKHL 431 (433)
Q Consensus 399 g~~f~-------------------~~~~~~iRi~~~~--~~~~l~~~l~~l~~~ 431 (433)
|+.+. ...++.||||++. ++++++.+.++|+++
T Consensus 361 G~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~~ 414 (415)
T 2fq6_A 361 GGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFARI 414 (415)
T ss_dssp CSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHTT
T ss_pred CCCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHhh
Confidence 53321 0124789999754 567788888877654
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.9e-23 Score=204.96 Aligned_cols=327 Identities=11% Similarity=0.038 Sum_probs=216.7
Q ss_pred CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCC--CCcEEE---cCChHHHHHH-HHHhcCC-
Q 045431 76 PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIE--EGDIFV---SDGAKCDISR-LQIVFGS- 148 (433)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~--~~~i~~---~~G~~~al~~-l~~l~~~- 148 (433)
.+++.+.+++.+.+.. ...+|....+..++++.+.+++.+.++++ +++++. |+|+++++.+ +.++..+
T Consensus 67 ~~~~~v~~~l~~~~~~-----~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~ 141 (502)
T 3hbx_A 67 WMEPECDKLIMSSINK-----NYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKW 141 (502)
T ss_dssp CCCHHHHHHHHHTTTC-----BTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcc-----CCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHH
Confidence 4577788888887653 22334444567888888888888766776 666654 8999999886 5555544
Q ss_pred -------CC-----EEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEE
Q 045431 149 -------NV-----TMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFF 211 (433)
Q Consensus 149 -------gd-----~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l 211 (433)
|+ +|++++++|..+...++..| .+++.++.+++ .+..+++. .+++++|++
T Consensus 142 ~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G------------~~~~~v~~~~~-~~~~d~~~l~~~i~~~t~~v~~ 208 (502)
T 3hbx_A 142 QNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFE------------VELKEVKLSEG-YYVMDPQQAVDMVDENTICVAA 208 (502)
T ss_dssp HHHHHHTTCCCSCCEEEEETTCCHHHHHHHHHTT------------CEEEEECCBTT-BCSCCHHHHHHHCCTTEEEEEE
T ss_pred hHHHHhcCCCCCCcEEEEcCCchHHHHHHHHHcC------------ceeEEEecCCC-cCcCCHHHHHHHHhhCCEEEEE
Confidence 76 99999999999999999998 47888887653 23333321 357888999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHc------CCEEEEecccccccc---CCCCCcccccCCCCcceEEEeccccccccc
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKDN------GSIIVYDSAYALYIS---DDNPRSIFEIPGAKEVAIETSSFSKYAGFT 282 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~~------~~~li~De~~~~~~~---~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~ 282 (433)
++|+||||.+.+ +++|.++|+++ |+++++|++|+.+.. .+........ .+..++..|.+|.++ +
T Consensus 209 ~~~~n~tG~~~~---l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~---~~~D~v~~s~hK~l~-~ 281 (502)
T 3hbx_A 209 ILGSTLNGEFED---VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRL---PLVKSINVSGHKYGL-V 281 (502)
T ss_dssp EBSCTTTCCBCC---HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTS---TTEEEEEEETTTTTC-C
T ss_pred ecCCCCCCcccC---HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCC---CCceEEEECcccccC-C
Confidence 999999999987 77888888888 999999999986542 2211111111 233467788999884 7
Q ss_pred ccceeeeeccccc-cccCCcchhHHHH-HHH-h----hccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHH
Q 045431 283 GVRLGWTVIPKEL-LFSDGFPVAKDFN-RIV-C----TCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVET 355 (433)
Q Consensus 283 G~r~G~l~~~~~~-~~~~~~~~~~~~~-~~~-~----~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 355 (433)
+.++||+++.+.. +.... .+...+. ... . .+......+.+.+++..+. .+.+.++.++..++++++.+.
T Consensus 282 p~g~G~~~~~~~~~l~~~~-~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg---~~g~~~~~~~~~~~a~~l~~~ 357 (502)
T 3hbx_A 282 YAGIGWVIWRNKEDLPEEL-IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLG---HEGYRNVMENCRENMIVLREG 357 (502)
T ss_dssp CSSCEEEEESSGGGSCGGG-CEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCHHHhhHHh-ccCcccccCCCCCccccCCchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 7889988876443 21000 0000000 000 0 0001113444554444443 234577788888999999999
Q ss_pred HhhcC-CeeecC-CCccEEEEECCC---CChHHHHHHHHHcCCeEecCCCCCC-CCCCCeEEEeec--cChhHHHHHHHH
Q 045431 356 FNSLG-FKVYGG-KNAPYVWVQFPG---RSSWDVFSEILEKTHVVTTPGSGFG-PGGEGFIRVSAF--GHRGNVLEACKR 427 (433)
Q Consensus 356 l~~~g-~~~~~~-~~g~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~f~-~~~~~~iRi~~~--~~~~~l~~~l~~ 427 (433)
|++++ +++..+ ....++.+++++ .+..++...|. ++||.+....... ..+..++|+++. .+.++++.+++.
T Consensus 358 L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~-~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid~li~~ 436 (502)
T 3hbx_A 358 LEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLR-RYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVID 436 (502)
T ss_dssp HHTTTCEEECSCSSSSSEEEEEESSCSSCCHHHHHHHHH-TTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHH
T ss_pred HHhCCCEEEEeCCCCceEEEEEecCCCcCCHHHHHHHHH-hCCcEEeeccCCcccCCceEEEEEeCCCCCHHHHHHHHHH
Confidence 99984 888765 567788888864 23446666665 5599874322211 223568999974 479999999999
Q ss_pred HHHhh
Q 045431 428 FKHLY 432 (433)
Q Consensus 428 l~~~l 432 (433)
|++++
T Consensus 437 L~~~l 441 (502)
T 3hbx_A 437 IEKVM 441 (502)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.3e-23 Score=197.57 Aligned_cols=290 Identities=13% Similarity=0.081 Sum_probs=180.3
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhh----hHHHhCCccccccc
Q 045431 104 EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVD----SSVIMGQTGEFQKD 178 (433)
Q Consensus 104 ~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~----~~~~~g~~~~~~~~ 178 (433)
.....+|++.+|+++ +.+ +.|+++ ++++++.+ +..++++||+|++++|+|.++.. .+...|
T Consensus 81 ~p~~~~le~~lA~l~----g~~-~~v~~~-sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G-------- 146 (430)
T 3ri6_A 81 NPTVEDLEQRLKNLT----GAL-GVLALG-SGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFG-------- 146 (430)
T ss_dssp CHHHHHHHHHHHHHH----TCS-EEEEES-CHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTT--------
T ss_pred CHHHHHHHHHHHHHH----CCC-cEEEEC-CHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcC--------
Confidence 456778888888886 543 345555 55688886 67889999999999999998877 445666
Q ss_pred ccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCc
Q 045431 179 AEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRS 258 (433)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~ 258 (433)
.+++.++.++...+...+ .+++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+..... .+
T Consensus 147 ----~~~~~v~~~d~~~l~~ai--~~~t~~v~~e~p~NptG~~~d---l~~i~~la~~~g~~livD~a~~~~~~~---~~ 214 (430)
T 3ri6_A 147 ----IEVRFVDVMDSLAVEHAC--DETTKLLFLETISNPQLQVAD---LEALSKVVHAKGIPLVVDTTMTPPYLL---EA 214 (430)
T ss_dssp ----CEEEEECTTCHHHHHHHC--CTTEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTSCTTTC---CG
T ss_pred ----CEEEEeCCCCHHHHHHhh--CCCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccC---Ch
Confidence 477777765211111111 358999999999999999998 778999999999999999999853321 11
Q ss_pred ccccCCCCcceEEEecccccccccccceeeeec-ccc--cccc-CCcc---------hhHHHHH-HHhhccCCCcHHHHH
Q 045431 259 IFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVI-PKE--LLFS-DGFP---------VAKDFNR-IVCTCFNGASNISQA 324 (433)
Q Consensus 259 ~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~-~~~--~~~~-~~~~---------~~~~~~~-~~~~~~~~~~~~~q~ 324 (433)
... +..+++.|+||.++.+|..+|.+++ +.. +... ..+. +...... .........++....
T Consensus 215 -~~~----g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~~~~~a~ 289 (430)
T 3ri6_A 215 -KRL----GVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSLSPHNAY 289 (430)
T ss_dssp -GGG----TCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHH
T ss_pred -HHc----CCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHH
Confidence 111 2348999999999866655555444 222 2100 0000 0111111 111122223333322
Q ss_pred HHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCe-eecCC----------------CccEEEEECCCCCh-HHHH
Q 045431 325 GGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFK-VYGGK----------------NAPYVWVQFPGRSS-WDVF 385 (433)
Q Consensus 325 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~-~~~~~----------------~g~~~~~~~~~~~~-~~~~ 385 (433)
.+.. +.+.+..+.++..+++..+.+.|+++ ++. +..|. +|+.+|+.+++... ..++
T Consensus 290 l~l~-----~l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~~~~~~~~~ 364 (430)
T 3ri6_A 290 LQSL-----GLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESKEASYRFM 364 (430)
T ss_dssp HHHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHH
T ss_pred HHHh-----hhhhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCHHHHHHHH
Confidence 2222 23445666677788888999999887 555 33332 44489999983222 2333
Q ss_pred HHHHHcCCeEecCCCCCCC---------------------CCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 386 SEILEKTHVVTTPGSGFGP---------------------GGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 386 ~~l~~~~gi~v~~g~~f~~---------------------~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
.. ++..++.+.+|..++. ..++.||||+.. |+.+.+++.|+++|
T Consensus 365 ~~-l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~--E~~~dl~~dl~~al 429 (430)
T 3ri6_A 365 DA-LKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGI--EEIEDLKEDILQAL 429 (430)
T ss_dssp HH-CSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECCS--SCHHHHHHHHHHHH
T ss_pred Hh-CCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHhh
Confidence 33 3445677777876651 236789999753 44555555555554
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-23 Score=206.32 Aligned_cols=346 Identities=9% Similarity=0.017 Sum_probs=214.4
Q ss_pred hcCCCCceEEecCCCCC--C-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCC
Q 045431 58 LKYPDAEVISLGIGDTT--E-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDG 134 (433)
Q Consensus 58 ~~~~~~~~i~l~~g~~~--~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G 134 (433)
...++...|||..|... + ..++.+.+++.+++..... .....|+. ....+|++++++.+.+..+...++|++++|
T Consensus 58 ~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~-~~~~~~~~-~~~~~l~~~la~~l~~~~~~~~~~v~f~~s 135 (472)
T 1ohv_A 58 VDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTF-INRPALGI-LPPENFVEKLRESLLSVAPKGMSQLITMAC 135 (472)
T ss_dssp EBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHH-HCCCCTTT-SCBTTHHHHHHHTGGGGCCTTCCEEEEESS
T ss_pred EeCCCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhccc-cccccccc-ccHHHHHHHHHHHHHHhCCCCcCEEEEeCC
Confidence 34567789999877643 2 3589999999987643211 11123432 346799999999876644456789999999
Q ss_pred hHHHHHH-HHHhc-------C------------------CC---CEEEEeCCCChhhhhhHHHhCCcccccccccccceE
Q 045431 135 AKCDISR-LQIVF-------G------------------SN---VTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKI 185 (433)
Q Consensus 135 ~~~al~~-l~~l~-------~------------------~g---d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 185 (433)
+++|+.. +..+. + || +.|++.+++|+++......+.....+...+.....+
T Consensus 136 GseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~ 215 (472)
T 1ohv_A 136 GSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDW 215 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCC
T ss_pred chhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCC
Confidence 9999986 43331 1 46 899999999998765554333211000000000000
Q ss_pred --EEeecC--c-cCC--c--------ccCCCC--CC------CccEEEEcCCCCcccc-CCCHHHHHHHHHHHHHcCCEE
Q 045431 186 --EYMRCT--A-ENG--F--------FPDLST--VA------RTDIIFFCSPNNPTGA-AATREQLTRLVQFAKDNGSII 241 (433)
Q Consensus 186 --~~~~~~--~-~~~--~--------~~~~~~--~~------~~~~i~l~~p~nPtG~-~~~~~~~~~i~~~a~~~~~~l 241 (433)
+.+|.. + ... + ..++++ .+ ++++|++...+|+||. ..+.+.+++|.++|++||+++
T Consensus 216 ~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~ll 295 (472)
T 1ohv_A 216 PIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAF 295 (472)
T ss_dssp CEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEE
T ss_pred cccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEE
Confidence 111110 0 000 0 011211 11 6777666555788996 568999999999999999999
Q ss_pred EEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHH
Q 045431 242 VYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNI 321 (433)
Q Consensus 242 i~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (433)
|+||+|.++...+....+..+. .. ..+-+.||||.+ ++| ||++ ++++. .+.......+.+.+++
T Consensus 296 i~DEv~~g~g~~g~~~~~~~~g-v~-~~~Di~t~sK~~-l~G---G~~~-~~~~~---------~~~~~~~~~T~~~~~~ 359 (472)
T 1ohv_A 296 LVDEVQTGGGSTGKFWAHEHWG-LD-DPADVMTFSKKM-MTG---GFFH-KEEFR---------PNAPYRIFNTWLGDPS 359 (472)
T ss_dssp EEECTTTTTTTTSSSSGGGGGC-CS-SCCSEEEECGGG-SSE---EEEE-CGGGS---------CSSSSSSCCSSSSCHH
T ss_pred EEeCcccCCCCCCCchhccccC-CC-CCCCEEEEcccc-ccC---CccC-chhhc---------ccccccccCccCccHH
Confidence 9999999766554333332322 11 001244899995 345 7766 55442 1111223344557889
Q ss_pred HHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc--C----CeeecCCCccEEEEECCCC-ChHHHHHHHHHcCCe
Q 045431 322 SQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL--G----FKVYGGKNAPYVWVQFPGR-SSWDVFSEILEKTHV 394 (433)
Q Consensus 322 ~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g----~~~~~~~~g~~~~~~~~~~-~~~~~~~~l~~~~gi 394 (433)
+++++.++|+.... +.+.++++++++++.+.|+++ + +....+ .|.+++++++.. ....+...+++ +||
T Consensus 360 ~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~-~g~~~~~~~~~~~~~~~~~~~l~~-~Gv 434 (472)
T 1ohv_A 360 KNLLLAEVINIIKR---EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRG-RGTFCSFDTPDESIRNKLISIARN-KGV 434 (472)
T ss_dssp HHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEE-ETTEEEEECSSHHHHHHHHHHHHH-TTE
T ss_pred HHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecC-CceEEEEEeCChhHHHHHHHHHHH-CCe
Confidence 99888887752111 235667777777777777664 1 332333 467788888631 24567777765 599
Q ss_pred EecCCCCCCCCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 395 VTTPGSGFGPGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 395 ~v~~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
.+.|+ +.+++||+ +..+++++++++++|++++
T Consensus 435 ~~~~~------g~~~iRi~~~~~~t~e~i~~~~~~l~~~l 468 (472)
T 1ohv_A 435 MLGGC------GDKSIRFRPTLVFRDHHAHLFLNIFSDIL 468 (472)
T ss_dssp ECEEE------TTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEecC------CCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 99885 24789996 4678999999999999875
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-23 Score=204.96 Aligned_cols=293 Identities=12% Similarity=0.112 Sum_probs=191.6
Q ss_pred CHHHHHHHHHHHhccCCCCCCcEEEcCChHH-HHHH-HHHhcC--CCCEEEEeCCCChhhhhhHHHhCCccccccccccc
Q 045431 107 EKPLRAAIASTFYKDLGIEEGDIFVSDGAKC-DISR-LQIVFG--SNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKY 182 (433)
Q Consensus 107 ~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~-al~~-l~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~ 182 (433)
..++.+++.+++.+.++++++ +++|+|+++ ++.+ +..+.. +|+.|++++++|+.+...++..|
T Consensus 131 ~~~~~~~~~~~la~~~g~~~~-~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~~~G------------ 197 (456)
T 2z67_A 131 MYALTNKILESFFKQLGLNVH-AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVG------------ 197 (456)
T ss_dssp HHHHHHHHHHHHHHHTTCCCE-EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTT------------
T ss_pred HHHHHHHHHHHHHHHcCCCCC-EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHcC------------
Confidence 455666666666665687766 999999994 5443 333322 67889999999999988888888
Q ss_pred ceEEEeecCc-cCCcccCCC---C-------CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccc
Q 045431 183 GKIEYMRCTA-ENGFFPDLS---T-------VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYI 251 (433)
Q Consensus 183 ~~~~~~~~~~-~~~~~~~~~---~-------~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~ 251 (433)
.+++.++..+ +.++..+++ + ..++.+|++++|+||||.+.+ +++|.++|+++|+++++|++|+.+.
T Consensus 198 ~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~---l~~I~~la~~~g~~v~vD~A~~~~~ 274 (456)
T 2z67_A 198 MNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQN 274 (456)
T ss_dssp CEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTC
T ss_pred CCceEEEEeccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC---HHHHHHHHHHcCCcEEEECcchHHH
Confidence 3666666521 112222221 1 135667777899999999977 7888899999999999999998654
Q ss_pred cCCCCCcccccCCCCcceEEEecccccccccccceeeeecc-ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhc
Q 045431 252 SDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIP-KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACL 330 (433)
Q Consensus 252 ~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l 330 (433)
.+-.+.....+.+..| +++.|++|+++ +++++||++++ ++++ +.+...........+.+.+.+++..+
T Consensus 275 ~g~~~~~~~~~~~~~D--~~~~s~hK~~~-~p~g~G~l~~~~~~~~--------~~l~~~~~g~~~~~~~~~~~aal~~l 343 (456)
T 2z67_A 275 NYYLEKLKKAFKYRVD--AVVSSSDKNLL-TPIGGGLVYSTDAEFI--------KEISLSYPGRASATPVVNTLVSLLSM 343 (456)
T ss_dssp HHHHHHHHHHHTSCCS--EEEEEHHHHHC-CCSSCEEEEESCHHHH--------HHHHTTSCSCBCSHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhhCCCCC--EEEEcCCCCcC-CCCCeEEEEEcCHHHH--------hhcCcCCCCCCCCCHHHHHHHHHHHH
Confidence 3211111111211122 67889999874 77899999995 4443 33322111111122344555555444
Q ss_pred CcCChhHHHHHHHHHHHHHHHHHHHHhhc----CCeeecCCCccEEEEEC--CCCChHHHHHHHHHcCCe---Eec----
Q 045431 331 SPEGFKAVHEVIGFYKENTDIIVETFNSL----GFKVYGGKNAPYVWVQF--PGRSSWDVFSEILEKTHV---VTT---- 397 (433)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g~~~~~~~~g~~~~~~~--~~~~~~~~~~~l~~~~gi---~v~---- 397 (433)
. ..++++..++..++++++.+.|++. |+.+.++. .++++.+ ++. ..++...|.++ || .+.
T Consensus 344 ~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~~~--~~v~~~~~~~~~-~~~l~~~L~~~-gi~~~rv~~~~g 416 (456)
T 2z67_A 344 G---SKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVE--SPIASCISVNSD-PVEIAAKLYNL-RVTGPRGIKKTD 416 (456)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCC--CSSEEEEECSSC-HHHHHHHHHHT-TEESCEEECTTC
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHhcccccCCEecCCC--CeEEEEEecccH-HHHHHHHHHHc-CCCcceEEeecC
Confidence 2 3456888899999999999999887 87777665 5566666 432 35666666654 65 342
Q ss_pred --CCCCCCCCCCCeEEEeec--cChhHHHHHHHHHHHhhC
Q 045431 398 --PGSGFGPGGEGFIRVSAF--GHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 398 --~g~~f~~~~~~~iRi~~~--~~~~~l~~~l~~l~~~l~ 433 (433)
+|..|.....+++|+++. .+++++++++++|+++++
T Consensus 417 ~f~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~~ 456 (456)
T 2z67_A 417 HFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKILL 456 (456)
T ss_dssp HHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC--
T ss_pred ccccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHHhC
Confidence 134443334579999964 689999999999998764
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-22 Score=200.59 Aligned_cols=332 Identities=12% Similarity=0.097 Sum_probs=213.8
Q ss_pred CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCC-CcEEEcCChHHHHHH-HHH----hc---
Q 045431 76 PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEE-GDIFVSDGAKCDISR-LQI----VF--- 146 (433)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~-~~i~~~~G~~~al~~-l~~----l~--- 146 (433)
+.++.+.+++.....+ .....|+...+..++.+++.+++.+.+++++ +++++|+|+++++.+ +.. ++
T Consensus 111 ~~~~~v~~~~~~~~~n----~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~ 186 (497)
T 2qma_A 111 PLMPAVAAEAMIAALN----QSMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIADKL 186 (497)
T ss_dssp CBHHHHHHHHHHHHHC----CCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhhc----ccccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHHHHHHHhh
Confidence 4677777777665543 2344565555778888888888877667765 899999999999876 433 23
Q ss_pred ------CC------CC-EEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CC----Cc
Q 045431 147 ------GS------NV-TMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VA----RT 206 (433)
Q Consensus 147 ------~~------gd-~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~----~~ 206 (433)
.+ |+ .|++..++|.++...+..+|. +. .+++.+|.+.+..++.+ +++ .+ ++
T Consensus 187 ~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~-g~--------~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~ 257 (497)
T 2qma_A 187 SGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGL-GE--------KAVMTVDANADGTMDITKLDEVIAQAKAEGL 257 (497)
T ss_dssp HCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTS-CG--------GGEEEECBCTTSSBCGGGHHHHHHHHHHTTC
T ss_pred cccchhhcccccccCCeEEEECCCchHHHHHHHHHcCC-Cc--------ccEEEEecCCCCcCCHHHHHHHHHHHHHCCC
Confidence 13 46 799999999999888888873 10 15777887643322222 221 01 23
Q ss_pred c--EEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccccc
Q 045431 207 D--IIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGV 284 (433)
Q Consensus 207 ~--~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~ 284 (433)
+ +|++++++||||...+ +++|.++|++||+++++|++|+.+........ .+.+.....++..|+||+++ .+.
T Consensus 258 ~~~~vv~~~~~~~tG~~~~---l~~I~~l~~~~~~~l~vD~a~~~~~~~~~~~~--~~~gi~~~D~i~~s~hK~l~-~p~ 331 (497)
T 2qma_A 258 IPFAIVGTAGTTDHGAIDD---LDFIADMAVKHDMWMHVDGAYGGALILSSHKS--RLKGVERAHSISVDFHKLFY-QTI 331 (497)
T ss_dssp EEEEEEEEBSCTTTCCBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGSTTGG--GGTTGGGCSEEEEETTTTTC-CCS
T ss_pred cceEEEEcCCCCCCCCCCC---HHHHHHHHHHcCCEEEEehhhhHHHHhCcchH--hhcCcccCCEEEEcchhccC-CCc
Confidence 3 7777899999999766 88999999999999999999997655332111 12221122367789999987 557
Q ss_pred ceeeeeccccccccCCcchhHHHHHHH----hh------ccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHH
Q 045431 285 RLGWTVIPKELLFSDGFPVAKDFNRIV----CT------CFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVE 354 (433)
Q Consensus 285 r~G~l~~~~~~~~~~~~~~~~~~~~~~----~~------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 354 (433)
++|+++++++............+.... .. .......+.+.++...+. .+.++++.++..++++++.+
T Consensus 332 ~~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg---~~g~~~~~~~~~~~a~~l~~ 408 (497)
T 2qma_A 332 SCGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVG---PKALGDMYDHLLAQTLEVAD 408 (497)
T ss_dssp SCEEEEESCGGGGGGGCC--------------------CCSCCCTHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCHHHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHHHH
Confidence 999999876653111100000000000 00 000012334444455543 34567888889999999999
Q ss_pred HHhhc-CCeeecCCCccEEEEECCCCC------hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee---ccChhHHHHH
Q 045431 355 TFNSL-GFKVYGGKNAPYVWVQFPGRS------SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA---FGHRGNVLEA 424 (433)
Q Consensus 355 ~l~~~-g~~~~~~~~g~~~~~~~~~~~------~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~---~~~~~~l~~~ 424 (433)
.|++. ++++..+..+.++++++.+.. ..++...+.++ |+.+.++..+ .+.+++|+++ +.++++++++
T Consensus 409 ~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~l~~~l~~~l~~~-G~~~~~~~~~--~g~~~lRis~~~~~~t~edi~~~ 485 (497)
T 2qma_A 409 MIRTNDQFELLAEPSLSTVLFRATHETADLDELNKALRLEALTR-GIAVLGETIV--DGKTALKFTILNPCLTTSDFESL 485 (497)
T ss_dssp HHHTCTTEEECSCCSSSEEEEEECCSSSCHHHHHHHHHHHHHHH-TSCBCEEEEE--TTEEEEEEECCCTTCCHHHHHHH
T ss_pred HHhhCCCeEEEcCCCceEEEEEEcCCccCHHHHHHHHHHHHHhC-CCEEEEeeEE--CCEEEEEEEecCCCCCHHHHHHH
Confidence 99987 888764445667777775321 12344555544 9888665433 2356899996 4689999999
Q ss_pred HHHHHHhh
Q 045431 425 CKRFKHLY 432 (433)
Q Consensus 425 l~~l~~~l 432 (433)
+++|++++
T Consensus 486 ~~~l~~~~ 493 (497)
T 2qma_A 486 LSKINMLA 493 (497)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998875
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=200.73 Aligned_cols=326 Identities=11% Similarity=-0.013 Sum_probs=209.9
Q ss_pred ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCC---------CcEEEcCChHHHHHH-HHHhc
Q 045431 77 IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEE---------GDIFVSDGAKCDISR-LQIVF 146 (433)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~---------~~i~~~~G~~~al~~-l~~l~ 146 (433)
+|..+.+.+...+. .....|....+..++++++++|+.+.++.+. .++++|+|+++++.+ +..+.
T Consensus 86 ~~~~~~~~~~~~~n-----~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~ 160 (486)
T 1js3_A 86 YPAMLADMLCGAIG-----CIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAAR 160 (486)
T ss_dssp HHHHHHHHHHHHHC-----CCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-----cCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHH
Confidence 34456667776653 3445676666789999999999988666653 468999999999775 43332
Q ss_pred C---C------CC--------E--EEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CC
Q 045431 147 G---S------NV--------T--MAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VA 204 (433)
Q Consensus 147 ~---~------gd--------~--Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~ 204 (433)
. + || . |++++++|+++...++.+| .+++.++.+.+..++.+ +++ .+
T Consensus 161 ~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G------------~~v~~v~~d~~~~~d~~~L~~~i~~ 228 (486)
T 1js3_A 161 TKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGG------------VKLKAIPSDGKFAMRASALQEALER 228 (486)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHT------------CEEEEECCCTTSCCCHHHHHHHHHH
T ss_pred HHHhhhhhccCccchhcccCCCEEEEECCCCcHHHHHHHHhCC------------CceEEeecCCCCCCCHHHHHHHHHH
Confidence 1 1 42 3 7889999999999999999 47888888643222222 221 12
Q ss_pred Cc------cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC-CCCc-ccccCCCCcceEEEeccc
Q 045431 205 RT------DIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDD-NPRS-IFEIPGAKEVAIETSSFS 276 (433)
Q Consensus 205 ~~------~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~-~~~~-~~~~~~~~~~vi~i~S~s 276 (433)
++ .+|++++|+||||.+-+ +++|+++|++||+++++|++|+.+.... .... +..+.+ ...+..|+|
T Consensus 229 ~~~~g~~p~~vv~~~~~n~tG~~~~---l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~---adsi~~~~h 302 (486)
T 1js3_A 229 DKAAGLIPFFVVATLGTTSCCSFDN---LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEF---ADSFNFNPH 302 (486)
T ss_dssp HHHTTCEEEEEEEEBSCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGG---CSEEEECHH
T ss_pred HHhCCCCceEEEEeCCCCCCCCCCC---HHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccc---cCeeEEchh
Confidence 23 37888899999998755 8999999999999999999999754322 1211 112222 125567899
Q ss_pred ccccccccceeeeecccccc-ccCCcchhHHHHHHHh-------------hccCCCcHHHHHHHHHhcCcCChhHHHHHH
Q 045431 277 KYAGFTGVRLGWTVIPKELL-FSDGFPVAKDFNRIVC-------------TCFNGASNISQAGGLACLSPEGFKAVHEVI 342 (433)
Q Consensus 277 K~~~~~G~r~G~l~~~~~~~-~~~~~~~~~~~~~~~~-------------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~ 342 (433)
|+++. .+++||+++++... .+........+..... ........+.+.+++..+ +.++++++.
T Consensus 303 K~~~~-p~~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~---g~~g~~~~~ 378 (486)
T 1js3_A 303 KWLLV-NFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMY---GVKGLQAYI 378 (486)
T ss_dssp HHSSC-CSSCEEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHH---HHHHHHHHH
T ss_pred hhcCC-CcceEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHH---hHHHHHHHH
Confidence 99974 48999999976532 1100000000100000 001112345555555554 235678888
Q ss_pred HHHHHHHHHHHHHHhhc-CCeeecCCCccEEEEECCCCC--hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec---c
Q 045431 343 GFYKENTDIIVETFNSL-GFKVYGGKNAPYVWVQFPGRS--SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF---G 416 (433)
Q Consensus 343 ~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~~~~~~~~--~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~---~ 416 (433)
++..++++++.+.|++. |+++..+....++.+++++.+ ..++...+.++ |+.+.++..+. +.+++|+++. .
T Consensus 379 ~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~--~~~~lRi~~~~~~~ 455 (486)
T 1js3_A 379 RKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDGLNEALLERINSA-RKIHLVPCRLR--GQFVLRFAICSRKV 455 (486)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEECSCCCSSEEEEEESSCHHHHHHHHHHHHHH-TSCBCEEEEET--TEEEEEEECCCTTC
T ss_pred HHHHHHHHHHHHHHhcCCCeEEeCCCceeEEEEEecChHHHHHHHHHHHHhc-CCEEEEEEEEC--CEEEEEEEeCCCCC
Confidence 89999999999999987 888865334455556665322 45666666655 65543333332 3578999963 3
Q ss_pred ChhHHHHHHHHHHHhh
Q 045431 417 HRGNVLEACKRFKHLY 432 (433)
Q Consensus 417 ~~~~l~~~l~~l~~~l 432 (433)
+++++++++++|++++
T Consensus 456 t~~di~~~~~~l~~~~ 471 (486)
T 1js3_A 456 ESGHVRLAWEHIRGLA 471 (486)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 6889999999998764
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.3e-22 Score=190.44 Aligned_cols=314 Identities=13% Similarity=0.112 Sum_probs=205.1
Q ss_pred ecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHH-HHHHhccCCCCCCcEEEcCChHHHHHH-HHHh
Q 045431 68 LGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAI-ASTFYKDLGIEEGDIFVSDGAKCDISR-LQIV 145 (433)
Q Consensus 68 l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~l-a~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l 145 (433)
...+.|++++++.+.+++.+.+.. ..+..|+ ....+|++++ |+++ + ..+++++++|+++++.+ +..+
T Consensus 5 i~~~~p~~~~~~~i~~a~~~~~~~----~~~~~~~--~~~~~l~~~~~a~~~----g-~~~~~v~~~sgt~al~~al~~l 73 (377)
T 3ju7_A 5 IPFLRASTVPVIEYLDELKEIDAS----HIYTNYG--PINQRFEQTIMSGFF----Q-NRGAVTTVANATLGLMAAIQLK 73 (377)
T ss_dssp BCSCCCCCCCGGGGHHHHHHHHHH----TCCSSSC--HHHHHHHHHHHHHTS----T-TCSEEEEESCHHHHHHHHHHHH
T ss_pred eeccCCCCCCcHHHHHHHHHHHHc----CCcccCC--HHHHHHHHHHHHHHh----C-CCCeEEEeCCHHHHHHHHHHHc
Confidence 445688899999999999998864 2222233 3578999999 9986 5 25678888889999887 6676
Q ss_pred -cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCC---C---CCC--ccEEEEcCCCC
Q 045431 146 -FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS---T---VAR--TDIIFFCSPNN 216 (433)
Q Consensus 146 -~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~--~~~i~l~~p~n 216 (433)
+++||+|+++.|+|+.+...+...| .+++.++++++ ++..+++ + .++ +++|+ |+|
T Consensus 74 ~~~~Gd~Vi~~~~~~~~~~~~~~~~G------------~~~~~v~~~~~-~~~~d~~~l~~~i~~~~~~tk~v~---~~~ 137 (377)
T 3ju7_A 74 KRKKGKYALMPSFTFPATPLAAIWCG------------LEPYFIDISID-DWYMDKTVLWDKIEELKEEVAIVV---PYA 137 (377)
T ss_dssp SCTTCCEEEEESSSCTHHHHHHHHTT------------CEEEEECBCTT-TCSBCHHHHHHHHHHHGGGEEEEC---CBC
T ss_pred CCCCcCEEEECCCCcHHHHHHHHHcC------------CEEEEEecCCc-cCCcCHHHHHHHHhcCCCCceEEE---EEC
Confidence 8999999999999999999999888 47888888643 3333332 1 234 77766 678
Q ss_pred ccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecc--cccccccccceeeeecccc
Q 045431 217 PTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSF--SKYAGFTGVRLGWTVIPKE 294 (433)
Q Consensus 217 PtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~--sK~~~~~G~r~G~l~~~~~ 294 (433)
|||.+.+ +++|.++|+ ||++||+|++|+...... ..++. ....+ +.+.|| +|.++ +| +.|+++++++
T Consensus 138 ~~G~~~~---~~~i~~la~-~~~~vi~D~a~a~g~~~~-~~~~g--~~~~d--~~~~S~~~~K~l~-~g-~gG~~~~~~~ 206 (377)
T 3ju7_A 138 TFGSWMN---LEEYEELEK-KGVPVVVDAAPGFGLMNG-GMHYG--QDFSG--MIIYSFHATKPFG-IG-EGGLIYSKNE 206 (377)
T ss_dssp GGGBCCC---CHHHHHHHH-TTCCBEEECTTCTTCEET-TEETT--TTCSS--EEEEECBTTSSSC-CB-SCEEEEESCH
T ss_pred CCCCccC---HHHHHHHHh-cCCEEEEECCCccCCeEC-CEecc--CCCCc--EEEEECCCCCcCC-CC-CcEEEEECCH
Confidence 9999887 677888888 999999999998532211 11110 00123 444554 69997 45 6788887655
Q ss_pred ccccCCcchhHHHHHHHhhc------------cCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcC--
Q 045431 295 LLFSDGFPVAKDFNRIVCTC------------FNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLG-- 360 (433)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-- 360 (433)
.+ .+.+....... ....+.+.++.+...+ ++++...++.+++++.+.+.|++++
T Consensus 207 ~l-------~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l-----~~l~~~~~~~~~~~~~~~~~L~~~~~~ 274 (377)
T 3ju7_A 207 ED-------IQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATM-----KKWDDKLKERTRISEWYKQLLQSNGLM 274 (377)
T ss_dssp HH-------HHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHH-----HTHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HH-------HHHHHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 43 34444443311 2334555544444443 3346666777778888888888773
Q ss_pred -CeeecCCC--c--cEEEEECCCCC-hHHHHHHHHHcCCeEecCCCC--CCC------C--C---------CCeEEEeec
Q 045431 361 -FKVYGGKN--A--PYVWVQFPGRS-SWDVFSEILEKTHVVTTPGSG--FGP------G--G---------EGFIRVSAF 415 (433)
Q Consensus 361 -~~~~~~~~--g--~~~~~~~~~~~-~~~~~~~l~~~~gi~v~~g~~--f~~------~--~---------~~~iRi~~~ 415 (433)
+.+..... . .++.+.++... ..++...| +++||.++.+.. +.. . + .+.+||.+.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~ 353 (377)
T 3ju7_A 275 KKGWQLQKTEAVIQQFMPILCPEEVRNKQVIEDL-KKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLW 353 (377)
T ss_dssp TTTCBCCCCSCBCCSSEEEECCTTSCHHHHHHHH-HTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCC
T ss_pred cccccCCCCCcceEEEEEEEeCChhhHHHHHHHH-HHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCC
Confidence 22322111 1 23456666433 45555555 556999987762 210 0 0 246899864
Q ss_pred --cChhHHHHHHHHHHHhh
Q 045431 416 --GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 416 --~~~~~l~~~l~~l~~~l 432 (433)
.+++|++..++.|++++
T Consensus 354 ~~~t~~di~~v~~~l~~~~ 372 (377)
T 3ju7_A 354 EGMTKEIVEQIVICLGQKV 372 (377)
T ss_dssp TTCCHHHHHHHHHHHTC--
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 48999999999998765
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.4e-22 Score=190.87 Aligned_cols=282 Identities=14% Similarity=0.115 Sum_probs=182.2
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHHHHhcCCCCEEEEeCCCChhhhhhHHH-----hCCccccccc
Q 045431 104 EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVI-----MGQTGEFQKD 178 (433)
Q Consensus 104 ~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l~~l~~~gd~Vl~~~p~~~~~~~~~~~-----~g~~~~~~~~ 178 (433)
.....+|++.++++. +.+ +.++++++++++.++..++++||+|++++|+|.+....+.. .|
T Consensus 66 ~p~~~~l~~~la~l~----g~~--~~~~~~sG~~Ai~~~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g-------- 131 (400)
T 3nmy_A 66 NPTRFAYERCVAALE----GGT--RAFAFASGMAATSTVMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAG-------- 131 (400)
T ss_dssp CHHHHHHHHHHHHHH----TCS--EEEEESSHHHHHHHHHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHC--------
T ss_pred CHHHHHHHHHHHHHh----CCC--CEEEecCHHHHHHHHHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcC--------
Confidence 344567888888876 433 55555666899988778899999999999999976655443 36
Q ss_pred ccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCc
Q 045431 179 AEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRS 258 (433)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~ 258 (433)
.+++.++.++...+...+ .+++++|++++|+||||.+++ +++|.++|++||+++|+|++|+...... +
T Consensus 132 ----~~~~~v~~~d~~~l~~~i--~~~~~~v~~e~~~np~G~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~-~-- 199 (400)
T 3nmy_A 132 ----LDFSFVDLTDPAAFKAAI--RADTKMVWIETPTNPMLKLVD---IAAIAVIARKHGLLTVVDNTFASPMLQR-P-- 199 (400)
T ss_dssp ----CEEEEECTTSHHHHHHHC--CTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCC-G--
T ss_pred ----eEEEEECCCCHHHHHHHh--ccCCCEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcccccCC-h--
Confidence 467777764221111111 257899999999999999998 8899999999999999999998533221 1
Q ss_pred ccccCCCCcceEEEecccccccccccceee--eec-cccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh
Q 045431 259 IFEIPGAKEVAIETSSFSKYAGFTGVRLGW--TVI-PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF 335 (433)
Q Consensus 259 ~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~--l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~ 335 (433)
+ .+ +..+++.|+||.++.+|.++|. +++ ++++ .+.+...........++....++.+.++.
T Consensus 200 ~-~~----g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~--------~~~l~~~~~~~g~~~~~~~a~~~l~~l~~--- 263 (400)
T 3nmy_A 200 L-SL----GADLVVHSATKYLNGHSDMVGGIAVVGDNAEL--------AEQMAFLQNSIGGVQGPFDSFLALRGLKT--- 263 (400)
T ss_dssp G-GG----TCSEEEEETTTTTTCSSSCCCEEEEECSCHHH--------HHHHHHHHHHHCCBCCHHHHHHHHHHHTT---
T ss_pred h-hc----CCcEEEecCccccCCCCCcceeEEEEeCCHHH--------HHHHHHHHHhcCCCCCHHHHHHHHHhHhH---
Confidence 1 11 2348899999999877777765 444 3444 35555555544555667766666655542
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhc-CCe-eecC----------------CCccEEEEECCCC-C-hHHHHHHHHHcCCeE
Q 045431 336 KAVHEVIGFYKENTDIIVETFNSL-GFK-VYGG----------------KNAPYVWVQFPGR-S-SWDVFSEILEKTHVV 395 (433)
Q Consensus 336 ~~~~~~~~~~~~~~~~l~~~l~~~-g~~-~~~~----------------~~g~~~~~~~~~~-~-~~~~~~~l~~~~gi~ 395 (433)
+..+.++..++.+.+.+.|+++ .+. +..| ..|.++++.+++. . ...+... ++-.++.
T Consensus 264 --l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~~~~~~~~~~-l~~~~~~ 340 (400)
T 3nmy_A 264 --LPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGFDAAKRFCEK-TELFTLA 340 (400)
T ss_dssp --HHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHH-CSSSEEC
T ss_pred --HHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcHHHHHHHHHc-CCcceEe
Confidence 3556667788888899999876 343 2222 1467899999742 1 1222222 3333555
Q ss_pred ecCCCCCC---------------------CCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 396 TTPGSGFG---------------------PGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 396 v~~g~~f~---------------------~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+..|..++ ...++.+|+|++.. +.+..++.|+++|
T Consensus 341 ~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGle--~~~dli~dl~~al 396 (400)
T 3nmy_A 341 ESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGIE--DLGDLRGDLERAL 396 (400)
T ss_dssp SCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSS--CHHHHHHHHHHHH
T ss_pred cCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCcC--CHHHHHHHHHHHH
Confidence 55554432 11357899998652 2333344455444
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.90 E-value=7.9e-22 Score=193.07 Aligned_cols=341 Identities=11% Similarity=0.062 Sum_probs=195.5
Q ss_pred eEEecCCCCCCCChHHHHHHHHHHHhhccc-C-CCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCc---EEEcCChHHHH
Q 045431 65 VISLGIGDTTEPIPEVITSALAKRSYALST-Q-EGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGD---IFVSDGAKCDI 139 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~---i~~~~G~~~al 139 (433)
.|.|-.+++ .+++.+.+++...+.+... . .+...|+-..-..+|++...+++.+.++++.+. .++++++++++
T Consensus 56 ~i~lias~n--~~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An 133 (490)
T 2a7v_A 56 GLELIASEN--FCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPAN 133 (490)
T ss_dssp SEECCTTCC--CCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHH
T ss_pred CceEECCCC--CCCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHH
Confidence 477766544 3789999999887754211 0 011112212223466643334444434777653 24444567777
Q ss_pred HH-HHHhcCCCCEEEEeCCCChhhhh--------hHHHhCCcccccccccccceEEEeecCccCCcccCCCC------CC
Q 045431 140 SR-LQIVFGSNVTMAVQDPSYPAYVD--------SSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST------VA 204 (433)
Q Consensus 140 ~~-l~~l~~~gd~Vl~~~p~~~~~~~--------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 204 (433)
.+ +.++++|||+|++.++.|.++.. .+...|.. ..++.++++++. ...+++. ..
T Consensus 134 ~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~----------~~~~~~~vd~~~-~~iD~d~le~~l~~~ 202 (490)
T 2a7v_A 134 LAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIF----------FESMPYKLNPKT-GLIDYNQLALTARLF 202 (490)
T ss_dssp HHHHHHHCCSCEECCC-----------------------------------------CCBCTTT-CSBCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCEecccCccccccccchhhhcchhHHHcCCe----------EEEEeccccccc-CCcCHHHHHHHHhhc
Confidence 75 78899999999999999876432 12223321 133444444322 2333322 13
Q ss_pred CccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEecccc-ccccCCC-CCcccccCCCCcceEEEeccccccccc
Q 045431 205 RTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYA-LYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFT 282 (433)
Q Consensus 205 ~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~-~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~ 282 (433)
++++|++++|+||+ ..+ +++|.++|++||+++++|++|. ++...+. +.++ +. ..+++.|+||++ .
T Consensus 203 ~~klIi~~~s~~~~--~~d---l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~---~~---aDiv~~S~hK~l--~ 269 (490)
T 2a7v_A 203 RPRLIIAGTSAYAR--LID---YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPF---KH---ADIVTTTTHKTL--R 269 (490)
T ss_dssp CCSEEEECCSSCCS--CCC---HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGG---GT---CSEEEEESSGGG--C
T ss_pred CCcEEEEcCCCCCC--ccc---HHHHHHHHHHcCCEEEEccccccccccCCcCCCCC---CC---CCEEEECCcccC--c
Confidence 67888888889875 334 8899999999999999999976 3444432 2232 12 238889999988 4
Q ss_pred ccceeeeeccccccccCC-------cchhHHHHHHHhhccCCCcHHH-HHHHHHhcCcCChhHHHHHHHHHHHHHHHHHH
Q 045431 283 GVRLGWTVIPKELLFSDG-------FPVAKDFNRIVCTCFNGASNIS-QAGGLACLSPEGFKAVHEVIGFYKENTDIIVE 354 (433)
Q Consensus 283 G~r~G~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 354 (433)
|.|.|+++++++++..+. ..+.+.++........+.+... .++...++........++..+++.++++++.+
T Consensus 270 Gp~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~ 349 (490)
T 2a7v_A 270 GARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMAD 349 (490)
T ss_dssp SCSCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred cccchheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 678899999886421000 0123455544333222223333 33323333321112346778889999999999
Q ss_pred HHhhcCCeeec-CCCccEEEEECCC--CChHHHHHHHHHcCCeEecCCCCCC---CCCCCeEEEee------ccChhHHH
Q 045431 355 TFNSLGFKVYG-GKNAPYVWVQFPG--RSSWDVFSEILEKTHVVTTPGSGFG---PGGEGFIRVSA------FGHRGNVL 422 (433)
Q Consensus 355 ~l~~~g~~~~~-~~~g~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~f~---~~~~~~iRi~~------~~~~~~l~ 422 (433)
.|.+.|+.+.. +....++|+++.. .+..+ +...+++.||.+..+..++ +..++.|||+. ..++++++
T Consensus 350 ~L~~~G~~v~~~~t~t~lv~vdl~~~g~~~~~-~~~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~ 428 (490)
T 2a7v_A 350 ALLERGYSLVSGGTDNHLVLVDLRPKGLDGAR-AERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFR 428 (490)
T ss_dssp HHHHTTCEEGGGSCSSSEEEEECTTTTCCHHH-HHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHH
T ss_pred HHHHcCcEEecCCCCCeEEEEEeCCCCCCHHH-HHHHHHhCCeEEecCccCCCCCCCCCCceEecccccccCCCCHHHHH
Confidence 99999998864 3456789999863 34444 4555667799998543332 33457899974 23789999
Q ss_pred HHHHHHHHhh
Q 045431 423 EACKRFKHLY 432 (433)
Q Consensus 423 ~~l~~l~~~l 432 (433)
++++.|.+++
T Consensus 429 ~~~~~i~~~l 438 (490)
T 2a7v_A 429 RVVDFIDEGV 438 (490)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988765
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.8e-22 Score=197.73 Aligned_cols=315 Identities=10% Similarity=0.067 Sum_probs=204.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhccCCCC--CCcEEEcCChHHHHHH-HHHhc--------CCC-----C-EEEEeCCCCh
Q 045431 98 YSGYGAEQGEKPLRAAIASTFYKDLGIE--EGDIFVSDGAKCDISR-LQIVF--------GSN-----V-TMAVQDPSYP 160 (433)
Q Consensus 98 ~~~Y~~~~g~~~lr~~la~~l~~~~~~~--~~~i~~~~G~~~al~~-l~~l~--------~~g-----d-~Vl~~~p~~~ 160 (433)
...|....+..++++++.+++.+.++++ ++++++|+|+++++.+ +..+. .+| + .|++++++|+
T Consensus 121 ~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~ 200 (504)
T 2okj_A 121 MFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHY 200 (504)
T ss_dssp SSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCT
T ss_pred CCchhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchH
Confidence 3467666667788888888887755666 7899999999999886 44442 256 6 7899999999
Q ss_pred hhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CC------CccEEEEcCCCCccccCCCHHHHHHHH
Q 045431 161 AYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VA------RTDIIFFCSPNNPTGAAATREQLTRLV 231 (433)
Q Consensus 161 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~------~~~~i~l~~p~nPtG~~~~~~~~~~i~ 231 (433)
++...+..+|. +. .+++.+|.+.+..++.+ +++ .+ ++++|++++|+||||.+.+ +++|.
T Consensus 201 s~~~~~~~~g~-g~--------~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~---l~~I~ 268 (504)
T 2okj_A 201 SIKKAGAALGF-GT--------DNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP---IQEIA 268 (504)
T ss_dssp HHHHHHHHTTS-CG--------GGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC---HHHHH
T ss_pred HHHHHHHHcCC-Cc--------ccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC---HHHHH
Confidence 99988888873 11 15777887643322222 211 11 5788999999999999877 88899
Q ss_pred HHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccceeeeecccc-cccc---CCcchh-H
Q 045431 232 QFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKE-LLFS---DGFPVA-K 305 (433)
Q Consensus 232 ~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~-~~~~---~~~~~~-~ 305 (433)
++|++||+++++|++|+.+..... ... .+++.....++..|++|+++ .+.++|++++++. ++.. ...... .
T Consensus 269 ~la~~~g~~lhvD~a~~~~~~~~~~~~~--~~~g~~~~D~i~~~~hK~~~-~p~~~g~l~~~~~~~~~~~~~~~~~~l~~ 345 (504)
T 2okj_A 269 DICEKYNLWLHVDAAWGGGLLMSRKHRH--KLNGIERANSVTWNPHKMMG-VLLQCSAILVKEKGILQGCNQMCAGYLFQ 345 (504)
T ss_dssp HHHHHHTCEEEEEETTGGGGGGCTTTGG--GGTTGGGCSEEEECTTSTTC-CCSCCEEEEESSTTHHHHHHCCCCSSSCC
T ss_pred HHHHHcCCEEEEehhhhhHHHhCHhhHh--hcCCcccCCEEEECchhhcC-CCcceEEEEEECHHHHHHHhcCCCccccC
Confidence 999999999999999997654321 111 11211122367789999997 4478999998874 4310 000000 0
Q ss_pred --H-------HHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeec---CCCccEE
Q 045431 306 --D-------FNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYG---GKNAPYV 372 (433)
Q Consensus 306 --~-------~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~---~~~g~~~ 372 (433)
. +.............+.+.++.+++. .+.++++.++..++++++.+.|++. |+++.. |..++++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg---~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~ 422 (504)
T 2okj_A 346 PDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG---TVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVC 422 (504)
T ss_dssp SCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEE
T ss_pred CcccccCcCCcccCCCCCCCCccHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEE
Confidence 0 0000000000123555665656553 3456788888999999999999987 888874 5556665
Q ss_pred EEECCCC----------------ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec---cChhHHHHHHHHHHHhh
Q 045431 373 WVQFPGR----------------SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF---GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 373 ~~~~~~~----------------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~---~~~~~l~~~l~~l~~~l 432 (433)
+...+.. ...++...+.++ |+.+..+..+. ...+++|+++. ++++++++++++|++++
T Consensus 423 f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~~~~~~~~~~-~~~~~lRis~~~~~~t~edi~~~~~~l~~~~ 499 (504)
T 2okj_A 423 FWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMES-GTTMVGYQPQG-DKANFFRMVISNPAATQSDIDFLIEEIERLG 499 (504)
T ss_dssp EEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHH-TSCEEEEEEET-TEEEEEEECCCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEeCccccccccchhhHHHHHHHHHHHHHHHHhC-CcEEEEeeEEC-CceEEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 5444421 023455666655 75433222221 11368999985 58999999999998875
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.1e-22 Score=195.47 Aligned_cols=322 Identities=10% Similarity=0.076 Sum_probs=210.2
Q ss_pred hHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCC--CCcEEEcCChHHHHHH-HHHhcC-------
Q 045431 78 PEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIE--EGDIFVSDGAKCDISR-LQIVFG------- 147 (433)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~--~~~i~~~~G~~~al~~-l~~l~~------- 147 (433)
+..+.+.+..++. .....|....+..++++++++|+.+.++.+ ++.+++|+|+++++.. +..+..
T Consensus 109 ~~~~~e~l~~~~~-----~~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~ 183 (511)
T 3vp6_A 109 IGLAGEWLTSTAN-----TNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVK 183 (511)
T ss_dssp HHHHHHHHHHHHC-----CCSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHH
T ss_pred HHHHHHHHHHHhc-----cCCCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhh
Confidence 3444566666654 455678778899999999999998855554 5799999999999775 444332
Q ss_pred -------CCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CC------CccEEEE
Q 045431 148 -------SNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VA------RTDIIFF 211 (433)
Q Consensus 148 -------~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~------~~~~i~l 211 (433)
+++.|++++++|+++...++.+|... .+++.++.+.+..++.+ +++ .+ .+++|++
T Consensus 184 ~~G~~~~~~~~v~~s~~~H~s~~~~~~~~g~g~---------~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~ 254 (511)
T 3vp6_A 184 TKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGT---------DNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNA 254 (511)
T ss_dssp HHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCG---------GGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred hcCcccCCCeEEEECCCchHHHHHHHHHcCCCC---------CcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEE
Confidence 57899999999999999999888421 16778887654333222 221 11 2788888
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccceeeee
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTV 290 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~ 290 (433)
++|+||||.+-+ +++|+++|++||+++++|++|+....... ... .+.+.....++..+++|+++ ....+|+++
T Consensus 255 ~~~~~~~G~vd~---l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~--~~~g~~~aDsv~~~~hK~l~-~p~g~g~l~ 328 (511)
T 3vp6_A 255 TAGTTVYGAFDP---IQEIADICEKYNLWLHVDAAWGGGLLMSRKHRH--KLNGIERANSVTWNPHKMMG-VLLQCSAIL 328 (511)
T ss_dssp EBSCSSSCCBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGG--GGTTGGGCSEEEECTTSTTC-CCSCCEEEE
T ss_pred ecCCCCCccccc---HHHHHHHHHHcCCEEEEEccchhhHhhChhhhh--hccCCccCCEEEECcccccC-CCcCeEEEE
Confidence 999999999855 89999999999999999999987444221 111 11111122367789999997 446789888
Q ss_pred ccccccccCCcchhHHHHH----HH-----------------hhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHH
Q 045431 291 IPKELLFSDGFPVAKDFNR----IV-----------------CTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENT 349 (433)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~----~~-----------------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 349 (433)
+++.... ..... +. .........+...+++.++ +.++++++.++..++.
T Consensus 329 ~~~~~~~-------~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~---g~~gl~~~~~~~~~~a 398 (511)
T 3vp6_A 329 VKEKGIL-------QGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAK---GTVGFENQINKCLELA 398 (511)
T ss_dssp ESSTTHH-------HHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred EeCHHHH-------HHHhccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHH---hHHHHHHHHHHHHHHH
Confidence 8765320 11100 00 0000012234444444444 3456788999999999
Q ss_pred HHHHHHHhhc-CCeeec---CCCccEEEEEC-C-CCC---------------hHHHHHHHHHcCCeEecCCCCCCCCCCC
Q 045431 350 DIIVETFNSL-GFKVYG---GKNAPYVWVQF-P-GRS---------------SWDVFSEILEKTHVVTTPGSGFGPGGEG 408 (433)
Q Consensus 350 ~~l~~~l~~~-g~~~~~---~~~g~~~~~~~-~-~~~---------------~~~~~~~l~~~~gi~v~~g~~f~~~~~~ 408 (433)
+++.+.|++. |+++.. |..+. +++++ | +.+ ..++.+.|.++ |+.+.. ..+...+.+
T Consensus 399 ~~l~~~L~~~pg~~l~~~~~p~~~~-v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-G~~~~~-~~~~~~~~~ 475 (511)
T 3vp6_A 399 EYLYAKIKNREEFEMVFNGEPEHTN-VCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMES-GTTMVG-YQPQGDKAN 475 (511)
T ss_dssp HHHHHHHHSCTTEEESSSSCCSSSC-EEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHH-TSCEEE-EEEETTEEE
T ss_pred HHHHHHHhcCCCEEEEecCCCCeEE-EEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhc-CCEEEE-EEEeCCceE
Confidence 9999999987 888875 43444 44443 3 110 12456666665 754433 111122345
Q ss_pred eEEEeec---cChhHHHHHHHHHHHhh
Q 045431 409 FIRVSAF---GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 409 ~iRi~~~---~~~~~l~~~l~~l~~~l 432 (433)
++|++++ .+.++++.+++.|+++-
T Consensus 476 ~lRi~~~~~~~t~~di~~ll~~i~~~~ 502 (511)
T 3vp6_A 476 FFRMVISNPAATQSDIDFLIEEIERLG 502 (511)
T ss_dssp EEEECCCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 7999973 37899999999998763
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-21 Score=189.83 Aligned_cols=288 Identities=13% Similarity=0.076 Sum_probs=181.5
Q ss_pred CCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhH----HHhCCccccccccc
Q 045431 106 GEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSS----VIMGQTGEFQKDAE 180 (433)
Q Consensus 106 g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~~~~~~~ 180 (433)
...++++.+++++ +.+ +.|++++| ++++.+ +..++++||+|+++.++|+++...+ ...|
T Consensus 59 ~~~~l~~~la~~~----g~~-~~v~~~sG-t~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g---------- 122 (421)
T 2ctz_A 59 TVDVLEKRLAALE----GGK-AALATASG-HAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLG---------- 122 (421)
T ss_dssp HHHHHHHHHHHHH----TCS-EEEEESSH-HHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTT----------
T ss_pred HHHHHHHHHHHHh----CCC-ceEEecCH-HHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcC----------
Confidence 4578999999997 544 45666665 888886 6677899999999999999887665 5556
Q ss_pred ccceEEEe-ecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccc-cccccCCCCCc
Q 045431 181 KYGKIEYM-RCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAY-ALYISDDNPRS 258 (433)
Q Consensus 181 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~-~~~~~~~~~~~ 258 (433)
.+++.+ +.++...+...+ .+++++|++++|+||||.+++ +++|.++|++||+++|+|++| + +.+...+
T Consensus 123 --~~~~~~~~~~d~~~l~~~i--~~~~~~v~~~~~~n~~G~~~~---l~~i~~~a~~~g~~livD~~~~~-~g~~~~~-- 192 (421)
T 2ctz_A 123 --IEVRFTSREERPEEFLALT--DEKTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGM-GGYLLRP-- 192 (421)
T ss_dssp --CEEEECCTTCCHHHHHHHC--CTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGG-GGTSCCG--
T ss_pred --CEEEEECCCCCHHHHHHhh--ccCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCccc-ccccCCc--
Confidence 367777 553211111111 257899999999999999999 889999999999999999999 5 3232222
Q ss_pred ccccCCCCcceEEEecccccccccccceeeeeccc---cccccCCcchhH------------H------HH--HH--Hhh
Q 045431 259 IFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPK---ELLFSDGFPVAK------------D------FN--RI--VCT 313 (433)
Q Consensus 259 ~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~---~~~~~~~~~~~~------------~------~~--~~--~~~ 313 (433)
+ .. +..+++.|+||.++.+|.|+|++++.+ ++.......+.. . .. +. ...
T Consensus 193 ~-~~----~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r~~~~~~ 267 (421)
T 2ctz_A 193 L-AW----GAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRD 267 (421)
T ss_dssp G-GG----TCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHH
T ss_pred c-cc----CCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHHHHHHHh
Confidence 2 22 124889999999998899999888752 120000000000 0 00 00 011
Q ss_pred ccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeec-C-----------------CCccEEEE
Q 045431 314 CFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYG-G-----------------KNAPYVWV 374 (433)
Q Consensus 314 ~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~-~-----------------~~g~~~~~ 374 (433)
.....+++...++...++ .+..+.++..++.+.+.+.|+++ ++..+. | ..|..+.+
T Consensus 268 ~g~~~~~~~a~~~~~~l~-----~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g~ivsf 342 (421)
T 2ctz_A 268 QGQALGPFEAWVVLLGME-----TLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTF 342 (421)
T ss_dssp HCCCCCHHHHHHHHHHHT-----THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEE
T ss_pred cCCCCCHHHHHHHHcCcc-----hHHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhccCCCceEEEE
Confidence 112334444444444333 23445566668888999999887 666541 1 23556777
Q ss_pred ECCCCChHHHHHHHHH---cCCeEecCCCCCCC---------------------CCCCeEEEeeccChhHHHHHHHHHHH
Q 045431 375 QFPGRSSWDVFSEILE---KTHVVTTPGSGFGP---------------------GGEGFIRVSAFGHRGNVLEACKRFKH 430 (433)
Q Consensus 375 ~~~~~~~~~~~~~l~~---~~gi~v~~g~~f~~---------------------~~~~~iRi~~~~~~~~l~~~l~~l~~ 430 (433)
.+.+. .+....++. ..++.+..|..+.. ..++.+|+|+. .++++..++.|++
T Consensus 343 ~l~~~--~~~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS~g--~e~~~~li~~l~~ 418 (421)
T 2ctz_A 343 GLKGG--YEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVG--LEHVEDLKAELKE 418 (421)
T ss_dssp EETTH--HHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECC--SSCHHHHHHHHHH
T ss_pred EeCCC--HHHHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeC--CCCHHHHHHHHHH
Confidence 87642 222233333 23555555532210 12479999975 4688888888888
Q ss_pred hhC
Q 045431 431 LYK 433 (433)
Q Consensus 431 ~l~ 433 (433)
+++
T Consensus 419 al~ 421 (421)
T 2ctz_A 419 ALA 421 (421)
T ss_dssp HTC
T ss_pred HhC
Confidence 764
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-21 Score=187.42 Aligned_cols=257 Identities=14% Similarity=0.116 Sum_probs=168.8
Q ss_pred HHHHHHHHHHHhhc--ccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEE--cCChHHHHHH-HHHhcCCCCEEE
Q 045431 79 EVITSALAKRSYAL--STQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFV--SDGAKCDISR-LQIVFGSNVTMA 153 (433)
Q Consensus 79 ~~~~~a~~~~~~~~--~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~--~~G~~~al~~-l~~l~~~gd~Vl 153 (433)
+.+++++.++.... .+......|+ ..|..+|++.+|+++ +.+.. ++. ++|+++++.+ +.++++|||+|+
T Consensus 46 ~~Vl~A~~~~~~~~~~~~~~~gy~y~-~~~~~~Le~~lA~l~----g~e~a-lv~p~~~sGt~Ai~~al~all~pGD~Vl 119 (427)
T 3i16_A 46 LKVLNAFQEERISEAHFTNSSGYGYG-DIGRDSLDAVYARVF----NTESA-LVRPHFVNGTHALGAALFGNLRPGNTML 119 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCCCCTTCTT-CHHHHHHHHHHHHHH----TCSEE-EEETTCCSHHHHHHHHHHHHCCTTCEEE
T ss_pred HHHHHHHHHhchhHHhcCCCCCCCCC-HHHHHHHHHHHHHHh----CCcce-EEeCCCccHHHHHHHHHHHHhCCCCEEE
Confidence 45667776643111 1112223453 346788999999987 65433 442 6777788876 688999999999
Q ss_pred EeC-CCChhhhhhH-----------HHhCCcccccccccccceEEEeecCccCCcccC-CCC--C--CCccEEEEcC---
Q 045431 154 VQD-PSYPAYVDSS-----------VIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--V--ARTDIIFFCS--- 213 (433)
Q Consensus 154 ~~~-p~~~~~~~~~-----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~--~~~~~i~l~~--- 213 (433)
+++ |.|.++...+ +..| .+++.++.+.++..+.+ +++ . +++++|++++
T Consensus 120 ~~~~~~y~~~~~~~g~~~~~~~~~l~~~G------------~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~s~~ 187 (427)
T 3i16_A 120 SVCGEPYDTLHDVIGITENSNMGSLKEFG------------INYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTG 187 (427)
T ss_dssp ESSSSCCGGGHHHHTCSCCCSSCCTGGGT------------CEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEECSCC
T ss_pred EeCCCccHHHHHHHhccccchHHHHHHcC------------CEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEcCCC
Confidence 999 9998876433 3334 47778887654323222 221 2 6899999988
Q ss_pred -CCCccccCCCHHHHHHHHHHHHH--cCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccc-cceeee
Q 045431 214 -PNNPTGAAATREQLTRLVQFAKD--NGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTG-VRLGWT 289 (433)
Q Consensus 214 -p~nPtG~~~~~~~~~~i~~~a~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G-~r~G~l 289 (433)
|+||||. ..++++|+++|++ +|+++|+|++|+.+.+...+.. . +..++++|+||.+|.+| .+.||+
T Consensus 188 ~p~nptg~---i~dl~~i~~la~~~~~g~~livD~a~~~~~~~~~p~~---~----gaDiv~~S~sK~lgg~g~~~gG~i 257 (427)
T 3i16_A 188 YGWRRALL---IEDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPTD---V----GADLIAGSLIKNIGGGIAPTGGYL 257 (427)
T ss_dssp SSSSCCCC---HHHHHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGGG---G----TCSEEEEETTSGGGTTTCCSCEEE
T ss_pred CCCCCccc---HHHHHHHHHHHHHhCCCCEEEEECCCccccccCCccc---c----CCeEEEecCcccCCCCCCceEEEE
Confidence 8888876 5779999999999 9999999999997654322221 1 23489999999997444 567999
Q ss_pred eccccccccCCcchhHHHHHHHhhccCC--CcH-HH-HHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeec
Q 045431 290 VIPKELLFSDGFPVAKDFNRIVCTCFNG--ASN-IS-QAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYG 365 (433)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~-q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~ 365 (433)
+++++++ +.+.........+ .++ +. ...+.+ +.+.+..+.++..+++..+.+.|+++|+.+.+
T Consensus 258 ~~~~~li--------~~l~~~~~~~~~g~~~~~~~~~a~~~l~-----gl~~~~~r~~~~~~~a~~la~~L~~~g~~V~p 324 (427)
T 3i16_A 258 AGTKDCI--------EKTSYRLTVPGIGGECGSTFGVVRSMYQ-----GLFLAPHISMEALKGAILCSRIMELAGFEVMP 324 (427)
T ss_dssp EECHHHH--------HHHHHHHSCTTTGGGCCCCTTCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEES
T ss_pred EECHHHH--------HHHHHhcccCccCccCCccHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhCCCeecC
Confidence 9998885 5555432211111 111 11 111222 22345677888899999999999999988754
Q ss_pred CCCcc-----EEEEECC
Q 045431 366 GKNAP-----YVWVQFP 377 (433)
Q Consensus 366 ~~~g~-----~~~~~~~ 377 (433)
. .+. .+.+.+.
T Consensus 325 ~-~~~~~~~~i~~i~l~ 340 (427)
T 3i16_A 325 K-YDEKRSDIIQSIKFN 340 (427)
T ss_dssp C-TTSCCSSSCEEEECS
T ss_pred C-CCCCCccEEEEEEEC
Confidence 3 333 6777775
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.5e-21 Score=188.75 Aligned_cols=335 Identities=11% Similarity=0.063 Sum_probs=204.8
Q ss_pred CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhc-------C
Q 045431 76 PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVF-------G 147 (433)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~-------~ 147 (433)
..|..+...+.....+ .....|....+..++.+++.+++.+.++.+++++++|+|+++++.+ +..+. +
T Consensus 119 ~~~~~~~~~~l~~~~n----~~~~~~~~s~~~~~le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~ 194 (515)
T 2jis_A 119 LDPHALAGRIITESLN----TSQYTYEIAPVFVLMEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCK 194 (515)
T ss_dssp CCHHHHHHHHHHHHHC----CCTTCTTTCHHHHHHHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHH
T ss_pred CCHHHHHHHHHHHHhc----cCCCchhhchHHHHHHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHh
Confidence 3455555433332221 3334666666767777777777766557778899999999999775 43331 2
Q ss_pred -CCC------EEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--C------CCccEEEE
Q 045431 148 -SNV------TMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--V------ARTDIIFF 211 (433)
Q Consensus 148 -~gd------~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~------~~~~~i~l 211 (433)
+|+ .|++.+++|+++...++.+|. +. .+++.+|.+.+..++.+ +++ . .++++|++
T Consensus 195 ~~G~~~~~~~~vl~s~~~h~s~~~~~~~~g~-g~--------~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~ 265 (515)
T 2jis_A 195 QRGLRTLPPLALFTSKECHYSIQKGAAFLGL-GT--------DSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSA 265 (515)
T ss_dssp HHCGGGSCCEEEEEETTSCTHHHHHHHHTTS-CG--------GGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred hcCccccCCeEEEECCCccHHHHHHHHHcCC-CC--------CcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEE
Confidence 576 899999999999988888873 11 16777887643322222 221 1 14788999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeec
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVI 291 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~ 291 (433)
++|+||||.+.+ +++|.++|++||+++++|++|+.+........ ..+.+..+..+++.|++|+++ .+.++|++++
T Consensus 266 ~~~~n~tG~i~~---l~~I~~la~~~g~~l~vD~a~~~~~~~~~~~~-~~~~g~~~aD~v~~s~hK~l~-~p~g~G~l~~ 340 (515)
T 2jis_A 266 TSGTTVLGAFDP---LEAIADVCQRHGLWLHVDAAWGGSVLLSQTHR-HLLDGIQRADSVAWNPHKLLA-AGLQCSALLL 340 (515)
T ss_dssp EBSCTTTCCBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTG-GGGTTGGGCSEEEECTTSTTC-CCSCCEEEEE
T ss_pred eCCCCCCCCccC---HHHHHHHHHHcCCeEEEehhhhhHHHhChhhH-hhcCCCccCCEEEECcccccC-CCCCeeEEEE
Confidence 999999999887 78999999999999999999997655422110 012221123478889999987 4567999999
Q ss_pred ccc--ccccCCcchhHHHHHHHh-------h------ccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHH
Q 045431 292 PKE--LLFSDGFPVAKDFNRIVC-------T------CFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETF 356 (433)
Q Consensus 292 ~~~--~~~~~~~~~~~~~~~~~~-------~------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l 356 (433)
+++ ++..........+..... . .......+.+.++.+++. ...++++.++..++++++.+.|
T Consensus 341 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg---~~g~~~~~~~~~~~a~~l~~~L 417 (515)
T 2jis_A 341 QDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQG---DQGLERRIDQAFVLARYLVEEM 417 (515)
T ss_dssp SCCSCHHHHHHCC---------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHH
Confidence 877 431000000000000000 0 000112344444444443 3456788888999999999999
Q ss_pred hhc-CCeeecCC-CccEEEEECCC---C--ChH-----------HHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec---
Q 045431 357 NSL-GFKVYGGK-NAPYVWVQFPG---R--SSW-----------DVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF--- 415 (433)
Q Consensus 357 ~~~-g~~~~~~~-~g~~~~~~~~~---~--~~~-----------~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--- 415 (433)
++. |+++..+. .+.+.+...+. . +.. .+...+.++ |+.+...... ....+++|+++.
T Consensus 418 ~~~~g~~~~~~~~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~-G~~~~~~~~~-~~~~~~lRis~~~~~ 495 (515)
T 2jis_A 418 KKREGFELVMEPEFVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMVKE-GSMMIGYQPH-GTRGNFFRVVVANSA 495 (515)
T ss_dssp HTSTTEEESSCCSSSEEEEEECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHH-TSCEEEEEEE-TTEEEEEEEECCCTT
T ss_pred hcCCCEEEeCCCCeeEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhc-CCEEEEEEEE-CCceEEEEEEeCCCC
Confidence 987 88887543 34433333331 0 111 133444444 7544211000 112468999984
Q ss_pred cChhHHHHHHHHHHHhhC
Q 045431 416 GHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 416 ~~~~~l~~~l~~l~~~l~ 433 (433)
.+++++++++++|+++++
T Consensus 496 ~t~edid~~~~~l~~~~~ 513 (515)
T 2jis_A 496 LTCADMDFLLNELERLGQ 513 (515)
T ss_dssp CCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 689999999999998753
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-20 Score=181.51 Aligned_cols=257 Identities=14% Similarity=0.117 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHhhc--ccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEE--cCChHHHHHH-HHHhcCCCCEEE
Q 045431 79 EVITSALAKRSYAL--STQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFV--SDGAKCDISR-LQIVFGSNVTMA 153 (433)
Q Consensus 79 ~~~~~a~~~~~~~~--~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~--~~G~~~al~~-l~~l~~~gd~Vl 153 (433)
..+++++.++.... ........|+ ..|..+|++.+|+++ +.+. .+++ ++|+++++.+ +.++++|||+|+
T Consensus 32 ~~vl~a~~~~~~~~~~~~~~~~~~y~-~~~~~~Le~~lA~l~----g~e~-alv~p~~~sGt~Ai~~al~all~~GD~Vl 105 (409)
T 3jzl_A 32 AKVLDAFQENKVSDFHFHPSTGYGYD-DEGRDTLERVYATVF----KTEA-ALVRPQIISGTHAISTVLFGILRPDDELL 105 (409)
T ss_dssp HHHHHHHHHTTCCGGGGCCCCTTCTT-CHHHHHHHHHHHHHH----TCSE-EEEETTSCSHHHHHHHHHHHHCCTTCEEE
T ss_pred HHHHHHHHHhhhhhhccCCCcCCCCC-hhHHHHHHHHHHHHh----CCCc-EEEECCCccHHHHHHHHHHHhcCCCCEEE
Confidence 45667777654211 1112233564 346788999999987 5532 3332 7888888886 688899999999
Q ss_pred EeC-CCChhhhhhH----------HHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEEEEcC----CC
Q 045431 154 VQD-PSYPAYVDSS----------VIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIFFCS----PN 215 (433)
Q Consensus 154 ~~~-p~~~~~~~~~----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~~----p~ 215 (433)
+++ |.|..+...+ +..| .+++.++.+.++..+.+ +++ .+++++|++++ |+
T Consensus 106 ~~~~~~y~~~~~~~~~~g~~~~~l~~~G------------~~~~~v~~~~~g~~d~e~l~~ai~~~tklV~i~~s~g~p~ 173 (409)
T 3jzl_A 106 YITGQPYDTLEEIVGIRKQGQGSLKDFH------------IGYSSVPLLENGDVDFPRIAKKMTPKTKMIGIQRSRGYAD 173 (409)
T ss_dssp ECSSSCCTTHHHHHTSSSSSSSCTGGGT------------CEEEECCCCTTSCCCHHHHHHHCCTTEEEEEEECSCTTSS
T ss_pred EeCCCCcHhHHHHHhcccchhhHHHHcC------------CEEEEeCCCCCCCcCHHHHHHhccCCCeEEEEECCCCCCC
Confidence 998 9999887433 3344 47778887654323222 221 35789999998 99
Q ss_pred CccccCCCHHHHHHHHHHHHH--cCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccc-cceeeeecc
Q 045431 216 NPTGAAATREQLTRLVQFAKD--NGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTG-VRLGWTVIP 292 (433)
Q Consensus 216 nPtG~~~~~~~~~~i~~~a~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G-~r~G~l~~~ 292 (433)
||||.+ .++++|+++|++ ||+++|+|++|+.+.+...+.. . +..++++|+||.+|.+| .+.||++++
T Consensus 174 nptg~v---~~l~~I~~la~~~~~~~~livD~a~~~~~~~~~p~~---~----g~Div~~S~sK~lgg~~~~~GG~v~~~ 243 (409)
T 3jzl_A 174 RPSFTI---EKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPE---V----GADIIAGSLIKNPGGGLAKTGGYIAGK 243 (409)
T ss_dssp SCCCCH---HHHHHHHHHHHHHCTTCEEEEECTTCTTTSSCCSGG---G----TCSEEEEETTSGGGTTTCSSCEEEEEC
T ss_pred CCcCcc---ccHHHHHHHHHhhCCCCEEEEeCCcccccccCCccc---c----CCeEEEECccccCCccCCceEEEEEeC
Confidence 999875 569999999999 9999999999997654322221 1 23489999999998444 346999999
Q ss_pred ccccccCCcchhHHHHHHHhh----ccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCC
Q 045431 293 KELLFSDGFPVAKDFNRIVCT----CFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKN 368 (433)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~ 368 (433)
++++ +.+...... ...++....+.++.+.+ +....++++..+++..+.+.|+++|+++.+. .
T Consensus 244 ~~li--------~~l~~~~~~~~~g~~~g~~~~~~~~~l~gl-----~~~~~r~~~~~~~a~~la~~L~~~g~~v~p~-~ 309 (409)
T 3jzl_A 244 EALV--------DLCGYRLTTPGIGREAGASLYSLLEMYQGF-----FLAPHVTAQAIKGARFTAAMLAEFGVEADPV-W 309 (409)
T ss_dssp HHHH--------HHHHHHHSCTTTGGGCCCCTTCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCEEESC-T
T ss_pred HHHH--------HHHHHHhccccccccccccHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHhCCCcccCC-C
Confidence 8875 555443211 11222221122233322 3346677788899999999999999887543 2
Q ss_pred cc-----EEEEECC
Q 045431 369 AP-----YVWVQFP 377 (433)
Q Consensus 369 g~-----~~~~~~~ 377 (433)
+. .+.+.+.
T Consensus 310 ~~~~~~~i~~i~l~ 323 (409)
T 3jzl_A 310 DAPRTDLIQSVSFH 323 (409)
T ss_dssp TSCCSSSCCEEECS
T ss_pred CCCCccEEEEEEeC
Confidence 22 5667776
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.87 E-value=9.1e-21 Score=186.64 Aligned_cols=325 Identities=11% Similarity=-0.005 Sum_probs=211.6
Q ss_pred hHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCC---------cEEEcCChHHHHHH-HHHhc-
Q 045431 78 PEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEG---------DIFVSDGAKCDISR-LQIVF- 146 (433)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~---------~i~~~~G~~~al~~-l~~l~- 146 (433)
|..+.+.+...+. .....|....+..+|++++++|+.+.++.+.+ ..++|+|+++++.+ +....
T Consensus 87 ~~~~~~~l~~~~n-----~~~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~ 161 (475)
T 3k40_A 87 PAIVADMLSGAIA-----CIGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKA 161 (475)
T ss_dssp HHHHHHHHHHHHC-----CCSSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-----ccccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHH
Confidence 3444455555543 34457777888999999999999886666542 57888888888654 43321
Q ss_pred ------------------CCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCCC----
Q 045431 147 ------------------GSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LSTV---- 203 (433)
Q Consensus 147 ------------------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---- 203 (433)
.+++.|++++++|.++...+...| .+++.++++.++ ++.+ +++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~~g------------~~~~~v~~d~~~-~d~~~L~~~i~~~ 228 (475)
T 3k40_A 162 KKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGG------------VKLRSVQSENHR-MRGAALEKAIEQD 228 (475)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHHHT------------CEEEEECCBTTB-CCHHHHHHHHHHH
T ss_pred HHHHHhhccCcccccccccCCeEEEECCCchHHHHHHHHHcC------------CceEEEECCCCC-cCHHHHHHHHHHH
Confidence 135789999999999999988888 488889887543 3332 2210
Q ss_pred ----CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC-CCCcccccCCCCcceEEEeccccc
Q 045431 204 ----ARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDD-NPRSIFEIPGAKEVAIETSSFSKY 278 (433)
Q Consensus 204 ----~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~vi~i~S~sK~ 278 (433)
..+.+|+++.++|+||.+-+ +++|+++|++||+++++|++|+...... ..... +.+......+..|++|+
T Consensus 229 ~~~~~~~~~v~~~~~~t~~G~~~~---l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~--~~gi~~~Ds~~~~~hK~ 303 (475)
T 3k40_A 229 VAEGLIPFYAVVTLGTTNSCAFDY---LDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHL--MKGIESADSFNFNPHKW 303 (475)
T ss_dssp HHTTCEEEEEEEEBSCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGG--GTTGGGCSEEEECHHHH
T ss_pred HHCCCccEEEEEEecCCCCcCcCC---HHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHH--hcCcccCCEEEECchhc
Confidence 12567777899999999866 8899999999999999999998643321 11111 11111123667899998
Q ss_pred ccccccceeeeeccccccccCCcchhHH-HHHH--------Hhh---ccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHH
Q 045431 279 AGFTGVRLGWTVIPKELLFSDGFPVAKD-FNRI--------VCT---CFNGASNISQAGGLACLSPEGFKAVHEVIGFYK 346 (433)
Q Consensus 279 ~~~~G~r~G~l~~~~~~~~~~~~~~~~~-~~~~--------~~~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 346 (433)
++ ....+|++++++............. +... ... .......+.+.+++..+ +.+.++++.++..
T Consensus 304 l~-~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~---g~~g~~~~~~~~~ 379 (475)
T 3k40_A 304 ML-VNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLY---GVENLQAHIRRHC 379 (475)
T ss_dssp SS-CCSSCEEEEESSGGGC---------------------------CCCGGGTHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred cC-CCCceEEEEEeCHHHHHHHhcCCccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHH---hHHHHHHHHHHHH
Confidence 86 5566888887765421100000000 0000 000 00001234444444444 2345688889999
Q ss_pred HHHHHHHHHHhhc-CCeeecCCCccEEEEECCCC--ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec---cChhH
Q 045431 347 ENTDIIVETFNSL-GFKVYGGKNAPYVWVQFPGR--SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF---GHRGN 420 (433)
Q Consensus 347 ~~~~~l~~~l~~~-g~~~~~~~~g~~~~~~~~~~--~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~---~~~~~ 420 (433)
++++++.+.|++. |+++..+.....+++++++. ...++..++.++.++.+.|+.. .+..++|+++. .++++
T Consensus 380 ~~a~~l~~~L~~~~g~~l~~~~~~~iv~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~---~g~~~lR~~~~~~~tt~~d 456 (475)
T 3k40_A 380 NFAKQFGDLCVADSRFELAAEINMGLVCFRLKGSNERNEALLKRINGRGHIHLVPAKI---KDVYFLRMAICSRFTQSED 456 (475)
T ss_dssp HHHHHHHHHHHHSTTEEESSCCBTTEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEE---TTEEEEEEECCCTTCCHHH
T ss_pred HHHHHHHHHHhcCCCEEEecCCceEEEEEEeCCchHHHHHHHHHHHhCCcEEEEeeEE---CCEEEEEEEeCCCCCCHHH
Confidence 9999999999998 89988766677788888642 2456777777764445555432 23578999964 37899
Q ss_pred HHHHHHHHHHhh
Q 045431 421 VLEACKRFKHLY 432 (433)
Q Consensus 421 l~~~l~~l~~~l 432 (433)
+++++++|++++
T Consensus 457 i~~~~~~i~~~~ 468 (475)
T 3k40_A 457 MEYSWKEVSAAA 468 (475)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998864
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-19 Score=173.35 Aligned_cols=309 Identities=12% Similarity=0.056 Sum_probs=196.8
Q ss_pred eEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HH
Q 045431 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQ 143 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~ 143 (433)
+|++..+.+ ..++.+.+++.+.+... .|.+..+..++++++++++ +.+ ++++++++++++.+ +.
T Consensus 3 ~~~~~~~~~--~~~~~~~~a~~~~~~~~-------~~~~~~~~~~l~~~la~~~----~~~--~~i~~~sGt~a~~~al~ 67 (390)
T 3b8x_A 3 MINYPLASS--TWDDLEYKAIQSVLDSK-------MFTMGEYVKQYETQFAKTF----GSK--YAVMVSSGSTANLLMIA 67 (390)
T ss_dssp --CBCSCCC--CCCHHHHHHHHHHHHHT-------CCSSCHHHHHHHHHHHHHH----TCS--EEEEESCHHHHHHHHHH
T ss_pred ceeccCCCC--CCCHHHHHHHHHHHHcC-------CCCCChHHHHHHHHHHHHH----CCC--cEEEECCHHHHHHHHHH
Confidence 455544443 46788888998888641 3445678899999999998 554 45555555678876 66
Q ss_pred Hh-------cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCC---C--CCCccEEEE
Q 045431 144 IV-------FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS---T--VARTDIIFF 211 (433)
Q Consensus 144 ~l-------~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~i~l 211 (433)
.+ +++||+|+++.|+|+++...+...| .+++.++.+++ .+..+++ + .+++++|++
T Consensus 68 ~~~~~~~~~~~~g~~Vi~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~v~~ 134 (390)
T 3b8x_A 68 ALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQQYG------------LRVKFVDIDIN-TLNIDIESLKEAVTDSTKAILT 134 (390)
T ss_dssp HTTSSSSCSCCTTCEEEEESSSCHHHHHHHHHTT------------CEEEEECBCTT-TCSBCHHHHHHHCCTTEEEEEE
T ss_pred HHHhhhhcCCCCcCEEEECCCCcHHHHHHHHHcC------------CEEEEEecCcc-ccCcCHHHHHHHhCcCCeEEEE
Confidence 66 7899999999999999999988888 47888888654 1222322 1 257888888
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEec--ccccccccccceeee
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSS--FSKYAGFTGVRLGWT 289 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S--~sK~~~~~G~r~G~l 289 (433)
+| ++|...+ +++|.++|++||+++|+|++|+...... . ..+....+ +...| .+|.++ +| +.|++
T Consensus 135 ~~---~~g~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~-~---~~~g~~~~--~~~~s~~~~k~~~-~g-~gG~~ 200 (390)
T 3b8x_A 135 VN---LLGNPNN---FDEINKIIGGRDIILLEDNCESMGATFN-N---KCAGTFGL--MGTFSSFYSNHIA-TM-EGGCI 200 (390)
T ss_dssp EC---GGGCCCC---HHHHHHHHTTSCCEEEEECTTCTTCEET-T---EETTSSSS--EEEEECCTTSSSC-SS-SCEEE
T ss_pred EC---CccChhh---HHHHHHHHHHcCCEEEEECcCcccCEEC-C---cccccccc--eEEEEccCCCCCc-cC-CceEE
Confidence 74 5566544 8899999999999999999999432211 1 11111111 22222 245553 33 34899
Q ss_pred eccccccccCCcchhHHHHHHHhhc-------------------------------cCCCcHHHHHHHHHhcCcCChhHH
Q 045431 290 VIPKELLFSDGFPVAKDFNRIVCTC-------------------------------FNGASNISQAGGLACLSPEGFKAV 338 (433)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~q~~~~~~l~~~~~~~~ 338 (433)
++++..+ .+.+....... ....+.+...++...+ +++
T Consensus 201 ~~~~~~l-------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l-----~~l 268 (390)
T 3b8x_A 201 VTDDEEI-------YHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQL-----KKL 268 (390)
T ss_dssp EESCHHH-------HHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHH-----HHH
T ss_pred EeCCHHH-------HHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHH-----HHH
Confidence 8886332 13333222110 0114455555444433 456
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-CCeeecCC--Ccc-EEEEECC---CCChHHHHHHHHHcCCeEecCC---CCCCC-C-C
Q 045431 339 HEVIGFYKENTDIIVETFNSL-GFKVYGGK--NAP-YVWVQFP---GRSSWDVFSEILEKTHVVTTPG---SGFGP-G-G 406 (433)
Q Consensus 339 ~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~--~g~-~~~~~~~---~~~~~~~~~~l~~~~gi~v~~g---~~f~~-~-~ 406 (433)
++..++.+++++++.+.|+++ |+.+..+. .++ .+++.++ +.+..++...|. ++||.+.+. ..+.. . .
T Consensus 269 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~-~~gI~v~~~~~~~~~~~~~~~ 347 (390)
T 3b8x_A 269 PRFISVRRKNAEYFLDKFKDHPYLDVQQETGESSWFGFSFIIKKDSGVIRKQLVENLN-SAGIECRPIVTGNFLKNTDVL 347 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSEEECCCCSBCCCCEEEEEECTTSCCCHHHHHHHHH-HTTBCCBCSTTSSGGGCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcccCCCCCCcccEEEEEEecCcCcccHHHHHHHHH-HCCCCeeeecCCchhhcchhh
Confidence 778888889999999999987 77765432 233 3666766 345666666665 459999873 22111 0 0
Q ss_pred ------------------CCeEEEee--ccChhHHHHHHHHH
Q 045431 407 ------------------EGFIRVSA--FGHRGNVLEACKRF 428 (433)
Q Consensus 407 ------------------~~~iRi~~--~~~~~~l~~~l~~l 428 (433)
.+.+||++ ..+++|++..++.|
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 348 KYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp TTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred hcCCCCCcCCChHHHHHhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 13599996 45899999998876
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-20 Score=185.45 Aligned_cols=327 Identities=13% Similarity=0.078 Sum_probs=212.7
Q ss_pred ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCC----------CcEEEcCChHHHHHH-HHHh
Q 045431 77 IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEE----------GDIFVSDGAKCDISR-LQIV 145 (433)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~----------~~i~~~~G~~~al~~-l~~l 145 (433)
.|..+.+.+..++. .....|....+..++++++++|+.+.++.+. ...++|+|+++++.+ +...
T Consensus 91 ~~~~~~~~~~~~~n-----~~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~a 165 (481)
T 4e1o_A 91 WPSLLGDMLADAIN-----CLGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAA 165 (481)
T ss_dssp HHHHHHHHHHHHHC-----CCCSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-----cccCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHH
Confidence 34455556666554 4456787788999999999999988555543 256888888887654 4332
Q ss_pred c-------------------CCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--C
Q 045431 146 F-------------------GSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--V 203 (433)
Q Consensus 146 ~-------------------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~ 203 (433)
. .+++.|++++++|.++...+...| .+++.++.+.+..++.+ +++ .
T Consensus 166 r~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g------------~~~~~v~~~~~~~~d~~~Le~~i~ 233 (481)
T 4e1o_A 166 RKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISL------------VKMKFLPVDDNFSLRGEALQKAIE 233 (481)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHT------------CEEEEECCCTTSCCCHHHHHHHHH
T ss_pred HHHHHHHhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhCC------------CceEEEEcCCCCcCCHHHHHHHHH
Confidence 1 267899999999999998888777 47888888644333322 221 0
Q ss_pred ------CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC-CCCcccccCCCCcceEEEeccc
Q 045431 204 ------ARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDD-NPRSIFEIPGAKEVAIETSSFS 276 (433)
Q Consensus 204 ------~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~vi~i~S~s 276 (433)
..+.+|+.+.++|+||.+-+ +++|+++|++||+++++|++|+...... ..... ..+......+..+++
T Consensus 234 ~~~~~g~~~~~vv~~~~~t~~G~id~---l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~--~~gi~~aDsi~~~~h 308 (481)
T 4e1o_A 234 EDKQRGLVPVFVCATLGTTGVCAFDC---LSELGPICAREGLWLHIDAAYAGTAFLCPEFRGF--LKGIEYADSFTFNPS 308 (481)
T ss_dssp HHHHTTCEEEEEEEEBSCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGG--GTTGGGCSEEEECHH
T ss_pred HHHhCCCCcEEEEEecCCCCCcCcCC---HHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHH--hcCcccCCEEEEChH
Confidence 12566777899999998755 8899999999999999999998653322 11111 111111135667999
Q ss_pred ccccccccceeeeeccccccccCCcchhHHH------------HHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHH
Q 045431 277 KYAGFTGVRLGWTVIPKELLFSDGFPVAKDF------------NRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGF 344 (433)
Q Consensus 277 K~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 344 (433)
|+++ ....+|++++++.............+ .............+.+.+++..+ +.+.++++.++
T Consensus 309 K~l~-~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~---g~~g~~~~~~~ 384 (481)
T 4e1o_A 309 KWMM-VHFDCTGFWVKDKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSF---GVKNLQAHVRH 384 (481)
T ss_dssp HHSS-CCSSCEEEEESBHHHHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HhcC-CCCceEEEEEeCHHHHHHHhcCCchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHh---HHHHHHHHHHH
Confidence 9987 44557877776543210000000000 00000001112345555555554 23557888899
Q ss_pred HHHHHHHHHHHHhhc-CCeeecCCCccEEEEECCCC--ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec---cCh
Q 045431 345 YKENTDIIVETFNSL-GFKVYGGKNAPYVWVQFPGR--SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF---GHR 418 (433)
Q Consensus 345 ~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~~~~~~~--~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~---~~~ 418 (433)
..++++++.+.|++. |+++..+....++++++++. ...++...+.++..+.+.|+.. .+..++|+++. .++
T Consensus 385 ~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~---~g~~~lR~~~~~~~tt~ 461 (481)
T 4e1o_A 385 GTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLKGPNSLTENVLKEIAKAGRLFLIPATI---QDKLIIRFTVTSQFTTR 461 (481)
T ss_dssp HHHHHHHHHHHHHTCTTEECCSCCCSSEEEEEESSCHHHHHHHHHHHHHHCSSBCEEEEE---TTEEEEEEECCCTTCCH
T ss_pred HHHHHHHHHHHHhcCCCeEEecCCceeEEEEEeCCchHHHHHHHHHHHhCCeEEEEeeEE---CCEEEEEEEeCCCCCCH
Confidence 999999999999998 89987766778888888642 2456777776663355554332 23568999964 368
Q ss_pred hHHHHHHHHHHHhh
Q 045431 419 GNVLEACKRFKHLY 432 (433)
Q Consensus 419 ~~l~~~l~~l~~~l 432 (433)
+++++++++|++++
T Consensus 462 ~di~~~~~~i~~~~ 475 (481)
T 4e1o_A 462 DDILRDWNLIRDAA 475 (481)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.3e-21 Score=186.78 Aligned_cols=256 Identities=17% Similarity=0.154 Sum_probs=161.0
Q ss_pred CHHHHHHHHHHHhccCCCCCC--cEEEcCChHHHHHH-HHHhcCCCCEEEEeC-CCChhhhhhHHHhCC-cccccccccc
Q 045431 107 EKPLRAAIASTFYKDLGIEEG--DIFVSDGAKCDISR-LQIVFGSNVTMAVQD-PSYPAYVDSSVIMGQ-TGEFQKDAEK 181 (433)
Q Consensus 107 ~~~lr~~la~~l~~~~~~~~~--~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~-p~~~~~~~~~~~~g~-~~~~~~~~~~ 181 (433)
..++++.+++++ +.+.. +|++++ +++++.+ +.+++++||+|++++ |.|..+...+...|. +..+...|
T Consensus 67 ~~~l~~~la~~~----g~~~~~~~i~~~s-Gt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G-- 139 (431)
T 3ht4_A 67 RDTLEKVYADVF----GAEAGLVRPQIIS-GTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYN-- 139 (431)
T ss_dssp HHHHHHHHHHHT----TCSEECCBTTSCS-HHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGT--
T ss_pred HHHHHHHHHHHh----CCCcccccceeeC-HHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcC--
Confidence 344555555554 55432 344665 4788876 677899999999998 999988755532110 00011111
Q ss_pred cceEEEeecCccCCcccC-CCC--CCCccEEEEc-CCCCccccCCCHHHHHHHHHHHHH--cCCEEEEeccccccccCCC
Q 045431 182 YGKIEYMRCTAENGFFPD-LST--VARTDIIFFC-SPNNPTGAAATREQLTRLVQFAKD--NGSIIVYDSAYALYISDDN 255 (433)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~-~p~nPtG~~~~~~~~~~i~~~a~~--~~~~li~De~~~~~~~~~~ 255 (433)
.+++.++.+.++..+.+ +++ .+++++|+++ +||||+|..++.+++++|+++|++ +|+++|+|++|+.+.+...
T Consensus 140 -~~~~~v~~~~~~~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~ 218 (431)
T 3ht4_A 140 -IGYNAVPLTEGGLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQE 218 (431)
T ss_dssp -CEEEECCBCTTSSBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCC
T ss_pred -CEEEEeCCCCCCCcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCC
Confidence 47788887654322222 221 3589999999 699999999999999999999999 9999999999998765433
Q ss_pred CCcccccCCCCcceEEEecccccccc-cccceeeeeccccccccCCcchhHHHHHHHhhcc----CCCcHHHHHHHHHhc
Q 045431 256 PRSIFEIPGAKEVAIETSSFSKYAGF-TGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCF----NGASNISQAGGLACL 330 (433)
Q Consensus 256 ~~~~~~~~~~~~~vi~i~S~sK~~~~-~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~q~~~~~~l 330 (433)
+.. . +..++++|+||.+|. .+...||++++++++ +.+........ .+++...+.++.+.+
T Consensus 219 ~~~---~----g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li--------~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l 283 (431)
T 3ht4_A 219 PCH---V----GADLMAGSLIKNPGGGIVKTGGYIVGKEQYV--------EACAYRLTSPGIGAEAGASLYSLQEMYQGF 283 (431)
T ss_dssp GGG---T----TCSEEEEETTSGGGTTTCSSCEEEEECHHHH--------HHHHHHHSCTTTTTSCSCCCSCSHHHHHHH
T ss_pred ccc---c----CCeEEEcCccccCCCCCCCceEEEEecHHHH--------HHHHHHhccCCcccccCccHHHHHHHHhHh
Confidence 322 1 123889999999762 113449999998875 55544332211 111111122222222
Q ss_pred CcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCC----CccEEEEECCCC-ChHHHHHHHHH
Q 045431 331 SPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGK----NAPYVWVQFPGR-SSWDVFSEILE 390 (433)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~----~g~~~~~~~~~~-~~~~~~~~l~~ 390 (433)
+.+..+.++..++++.+.+.|+++|+.+.+.. .+..+.+.++.. ...++.+.+..
T Consensus 284 -----~~~~~~~~~~~~~a~~l~~~L~~~g~~v~p~~~~~~~~li~~i~l~~~~~~~~~~~~l~~ 343 (431)
T 3ht4_A 284 -----FLAPHVAGQALKGAIFTAAFLEKLGMNTSPAWNAPRTDLIQSVQFDDKDRMIAFCQAIQY 343 (431)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHTCCEESCTTSCCSSSCCEEECCCHHHHHHHHHHHHH
T ss_pred -----hhHHHHHHHHHHHHHHHHHHHHhCcCEecCCCCCCCccEEEEEEeCCHHHHHHHHHHHHh
Confidence 23466677888999999999999988774431 223566777632 22344444433
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-19 Score=170.87 Aligned_cols=319 Identities=12% Similarity=0.099 Sum_probs=205.6
Q ss_pred CCCChHHHHHHHHHHHhhcccCCCCCCC--CC-----CCCCHHHHHHHHHHHhccCCCCC-CcEEE-cCChHHHHHH-HH
Q 045431 74 TEPIPEVITSALAKRSYALSTQEGYSGY--GA-----EQGEKPLRAAIASTFYKDLGIEE-GDIFV-SDGAKCDISR-LQ 143 (433)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~Y--~~-----~~g~~~lr~~la~~l~~~~~~~~-~~i~~-~~G~~~al~~-l~ 143 (433)
..+.|+.+++++.+.+.+... .+.+.+ +. ..-..+.|+.+++++ ++++ ++|++ |+|+++++++ +.
T Consensus 21 ~~~~p~~Vl~a~~~~~~~~~~-n~~s~~~~~hr~~~~~~~~~~ar~~la~ll----~~~~~~evif~t~~~T~a~n~a~~ 95 (377)
T 3e77_A 21 QSMLPHSVLLEIQKELLDYKG-VGISVLEMSHRSSDFAKIINNTENLVRELL----AVPDNYKVIFLQGGGCGQFSAVPL 95 (377)
T ss_dssp SCCCCHHHHHHHHHTSSSGGG-SSSCTTTCCTTSHHHHHHHHHHHHHHHHHH----TCCTTEEEEEESSHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHhccc-CCccccccCCCCHHHHHHHHHHHHHHHHHh----CCCCCCeEEEEcCchHHHHHHHHH
Confidence 367899999999998865432 222111 11 122355667777776 7754 57888 6899999997 67
Q ss_pred HhcCC--CCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CC--CCCCccEEEEcCCCCcc
Q 045431 144 IVFGS--NVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LS--TVARTDIIFFCSPNNPT 218 (433)
Q Consensus 144 ~l~~~--gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~i~l~~p~nPt 218 (433)
.++.+ ||+|++..-++.+. .+.+.+...|. .++.++.+.+.+..++ ++ ..+++++|.+++..|.|
T Consensus 96 ~l~~~~~Gd~v~~~~~g~~~~-~~~~~a~~~G~---------~~~~~~~~~~~~~~~~~~~~~i~~~t~lV~~~h~et~t 165 (377)
T 3e77_A 96 NLIGLKAGRCADYVVTGAWSA-KAAEEAKKFGT---------INIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVH 165 (377)
T ss_dssp HHGGGSTTCEEEECCCSHHHH-HHHHHHTTTSE---------EEECSCCCSSSCSCCCGGGCCCCTTCSCEEEESEETTT
T ss_pred hccCCCCCCeEEEEECCHHHH-HHHHHHHHhCC---------ceEEeccCCCcCCCCChHHhccCCCccEEEEeCccCch
Confidence 78755 99998877766653 34444443332 4555666543333333 11 23688999988888999
Q ss_pred ccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecccccccc
Q 045431 219 GAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFS 298 (433)
Q Consensus 219 G~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~ 298 (433)
|++.+. +|+++|+++++|.+++... .|..+..+ + +++.|..|++|.+| +|+++++++++..
T Consensus 166 G~~~pi--------i~~~~~~~~~vD~~q~~g~---~~id~~~~----~--~~~~s~~K~~gp~G--~g~l~~~~~~l~~ 226 (377)
T 3e77_A 166 GVEFDF--------IPDVKGAVLVCDMSSNFLS---KPVDVSKF----G--VIFAGAQKNVGSAG--VTVVIVRDDLLGF 226 (377)
T ss_dssp TEECSS--------CCCCTTCCEEEECTTTTTS---SCCCGGGC----S--EEEEEGGGTTSCTT--CEEEEEETTSCSC
T ss_pred heEchh--------hhccCCCEEEEEcccccCC---CCCchhhc----C--EEEEecccccCCCc--cEEEEEcHHHHhh
Confidence 999985 3668999999999988421 14444433 2 46678899999778 7999999888633
Q ss_pred CC---cchhHHHHHHH--hhccCCCcHHHHHHHHHhcCcCChh-HHHHHHHHHHHHHHHHHHHHhhc-CCeeecC----C
Q 045431 299 DG---FPVAKDFNRIV--CTCFNGASNISQAGGLACLSPEGFK-AVHEVIGFYKENTDIIVETFNSL-GFKVYGG----K 367 (433)
Q Consensus 299 ~~---~~~~~~~~~~~--~~~~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~----~ 367 (433)
.. +.+.+ +.... .....+++.....++.++++-.... .++.+.++.++..+++.+.|+++ |+.+.+. .
T Consensus 227 ~~~~~p~~~~-~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~r 305 (377)
T 3e77_A 227 ALRECPSVLE-YKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNR 305 (377)
T ss_dssp CCTTSCGGGC-HHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGB
T ss_pred ccCCCCchhh-HHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHc
Confidence 21 11111 11111 1122334444444444444311112 46888899999999999999998 7775321 2
Q ss_pred CccEEEEECCCCCh-----HHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec--cChhHHHHHHHHHHHhh
Q 045431 368 NAPYVWVQFPGRSS-----WDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF--GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 368 ~g~~~~~~~~~~~~-----~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~l~~~l~~l~~~l 432 (433)
.+..+.+.+++... ..+...+. ++||.+.+|.. ..+.+|+|++ +++++++.+++.|++++
T Consensus 306 s~~ivsf~~~~~~~~~~~~~~~l~~l~-~~Gi~~~~g~~----~~g~iRiS~~~~~t~edId~l~~al~~~~ 372 (377)
T 3e77_A 306 SKMNIPFRIGNAKGDDALEKRFLDKAL-ELNMLSLKGHR----SVGGIRASLYNAVTIEDVQKLAAFMKKFL 372 (377)
T ss_dssp CSSEEEEEESSTTCCHHHHHHHHHHHH-HTTEESCBCCT----TTCSEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCchhHHHHHHHHHH-HCCcEEeCCCC----cCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 34457788875432 24455544 56999988863 2356999974 48999999999999875
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.1e-20 Score=179.01 Aligned_cols=255 Identities=15% Similarity=0.103 Sum_probs=166.1
Q ss_pred HHHHHHHHHHHhhcccC--CCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEE---cCChHHHHHH-HHHhcCCCCEE
Q 045431 79 EVITSALAKRSYALSTQ--EGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFV---SDGAKCDISR-LQIVFGSNVTM 152 (433)
Q Consensus 79 ~~~~~a~~~~~~~~~~~--~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~---~~G~~~al~~-l~~l~~~gd~V 152 (433)
+.+++++.+........ .....|+. .|..+|++.+|+++ +.+ ..++ ++|+++++.+ +.++++|||+|
T Consensus 47 ~~Vl~a~~~~~~~~~~~~~~~gy~Y~~-~g~~~Le~~lA~l~----g~e--~alv~p~~~sGt~A~~~al~all~pGD~V 119 (427)
T 3hvy_A 47 LKVLKAFQEERISESHFTNSSGYGYND-IGRDSLDRVYANIF----NTE--SAFVRPHFVNGTHAIGAALFGNLRPNDTM 119 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCCCCTTCTTC-HHHHHHHHHHHHHH----TCS--EEEEETTCCSHHHHHHHHHHHTCCTTCEE
T ss_pred HHHHHHHHHHHHHHHhcccCcCCCCCc-hhHHHHHHHHHHHh----CCC--ceEEeCCCCcHHHHHHHHHHHhcCCCCEE
Confidence 56677776653321111 12234533 46788999999987 554 3344 6777788876 68899999999
Q ss_pred EEeC-CCChhhhhh-----------HHHhCCcccccccccccceEEEeecCccCCcccC-CCC--C--CCccEEEEcC--
Q 045431 153 AVQD-PSYPAYVDS-----------SVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--V--ARTDIIFFCS-- 213 (433)
Q Consensus 153 l~~~-p~~~~~~~~-----------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~--~~~~~i~l~~-- 213 (433)
++++ |.|.++... ++..| .+++.++. +++..+.+ +++ . +++++|++++
T Consensus 120 l~~~~~~y~~~~~~~g~~~~~~~~~l~~~G------------~~~~~v~~-~~~~~d~e~l~~~i~~~~~tklV~i~~s~ 186 (427)
T 3hvy_A 120 MSICGMPYDTLHDIIGMDDSKKVGSLREYG------------VKYKMVDL-KDGKVDINTVKEELKKDDSIKLIHIQRST 186 (427)
T ss_dssp EECSSSCCGGGHHHHTCCTTCCSCCTGGGT------------CEEEECCC-BTTBCCHHHHHHHHHHCTTEEEEEEESSC
T ss_pred EEeCCCCchhHHHHhccccchhhhHHHHcC------------CEEEEecC-CCCCcCHHHHHHHhhCCCCCEEEEEECCC
Confidence 9999 999887633 33344 36777776 22222221 221 2 6899999998
Q ss_pred --CCCccccCCCHHHHHHHHHHHHH--cCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccc-cceee
Q 045431 214 --PNNPTGAAATREQLTRLVQFAKD--NGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTG-VRLGW 288 (433)
Q Consensus 214 --p~nPtG~~~~~~~~~~i~~~a~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G-~r~G~ 288 (433)
|+||||. ..++++|+++|++ +|+++|+|++|+.+.+...+.. . +..++++|+||++|.+| .+.||
T Consensus 187 gyp~nptg~---v~dl~~i~~ia~~~~~g~~livD~a~~~~~~~~~p~~---~----gaDiv~~S~sK~lgg~g~~~GG~ 256 (427)
T 3hvy_A 187 GYGWRKSLR---IAEIAEIIKSIREVNENVIVFVDNCYGEFVEEKEPTD---V----GADIIAGSLIKNIGGGIATTGGY 256 (427)
T ss_dssp CSSSSCCCC---HHHHHHHHHHHHHHCSSSEEEEECTTCTTTSSSCGGG---G----TCSEEEEETTSGGGTTTCCSCEE
T ss_pred CCCCCcccc---HHHHHHHHHHHHHhCCCCEEEEECCccccccCCCCcc---c----CCeEEEECCcccccccccceEEE
Confidence 8888876 5679999999999 8999999999987654322221 1 23489999999997433 45699
Q ss_pred eeccccccccCCcchhHHHHHHHhhccC----CCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeee
Q 045431 289 TVIPKELLFSDGFPVAKDFNRIVCTCFN----GASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVY 364 (433)
Q Consensus 289 l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 364 (433)
++++++++ +.+......... +++......+... .+....+.++..+++..+.+.|+++|+.+.
T Consensus 257 i~~~~~li--------~~l~~~~~~~~~g~~~~~~~~~a~~~~~g-----l~~~~~r~~~~~~~a~~la~~L~~~g~~V~ 323 (427)
T 3hvy_A 257 IAGKEEYV--------TQATFRVTVPGIGGECGSTFGVMRSLYEG-----LFMAPHVTIEAVKGAVFCARIMELAGFDVL 323 (427)
T ss_dssp EEECHHHH--------HHHHHHHSCTTTGGGCCCCTTCHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred EEECHHHH--------HHHHHHhhcCCcccccCCCHHHHHHHHHh-----HhHHHHHHHHHHHHHHHHHHHHHhCCCeec
Confidence 99998875 555543221111 1111112222222 233466777888999999999999998875
Q ss_pred cCCCcc-----EEEEECC
Q 045431 365 GGKNAP-----YVWVQFP 377 (433)
Q Consensus 365 ~~~~g~-----~~~~~~~ 377 (433)
+. .+. .+.+.+.
T Consensus 324 p~-~~~~~~~li~~~~l~ 340 (427)
T 3hvy_A 324 PK-YNDKRTDIIQAIKFN 340 (427)
T ss_dssp SC-TTSCCSSSEEEEECS
T ss_pred CC-CCCCCceEEEEEeCC
Confidence 43 332 6777775
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-19 Score=184.52 Aligned_cols=297 Identities=12% Similarity=0.048 Sum_probs=186.0
Q ss_pred CCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhh-HHHhCCccccccccc
Q 045431 103 AEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDS-SVIMGQTGEFQKDAE 180 (433)
Q Consensus 103 ~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~-~~~~g~~~~~~~~~~ 180 (433)
+..-..++++.+|+++ +.+ ..+++++|+++++.+ +.+++++||+|++++|+|.++... +...|.
T Consensus 171 ~~~~i~e~e~~lA~~~----gae-~~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~~~~~l~Ga--------- 236 (730)
T 1c4k_A 171 HEGPAVAAEKHAARVY----NAD-KTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGG--------- 236 (730)
T ss_dssp TBTHHHHHHHHHHHHT----TCS-EEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTTCC---------
T ss_pred ChHHHHHHHHHHHHHH----CCC-cEEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHCCC---------
Confidence 3445688999999987 665 458899999999886 688899999999999999998877 666673
Q ss_pred ccceEEEeecCccC-C----ccc-CC-----CC--CCC------c----cEEEEcCCCCccccCCCHHHHHHHHHHHHHc
Q 045431 181 KYGKIEYMRCTAEN-G----FFP-DL-----ST--VAR------T----DIIFFCSPNNPTGAAATREQLTRLVQFAKDN 237 (433)
Q Consensus 181 ~~~~~~~~~~~~~~-~----~~~-~~-----~~--~~~------~----~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~ 237 (433)
.++.++.+.+. + ++. ++ ++ .++ + +++++++| ||+|.+.+ +++|+++|++|
T Consensus 237 ---~~v~v~~~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~d---l~~I~~la~~~ 309 (730)
T 1c4k_A 237 ---RPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYN---AHEVVKRIGHL 309 (730)
T ss_dssp ---EEEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEEC---HHHHHHHHGGG
T ss_pred ---EEEEEeCCccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecC---HHHHHHHHHHc
Confidence 55555443210 0 111 12 11 112 3 88999999 58999987 78999999999
Q ss_pred CCEEEEecccccc-ccCCC-C--Cccc--ccCCCCcceEEEecccccccccccce-eeeeccccccccCCcch-hHHHHH
Q 045431 238 GSIIVYDSAYALY-ISDDN-P--RSIF--EIPGAKEVAIETSSFSKYAGFTGVRL-GWTVIPKELLFSDGFPV-AKDFNR 309 (433)
Q Consensus 238 ~~~li~De~~~~~-~~~~~-~--~~~~--~~~~~~~~vi~i~S~sK~~~~~G~r~-G~l~~~~~~~~~~~~~~-~~~~~~ 309 (433)
|+++|+|++|+.. .+.+. + .++. .+....++++++.|+||++ +|++. |+++++++.+......+ ...+..
T Consensus 310 g~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L--~g~~~gg~I~v~~~~l~g~~~~i~~~~~~~ 387 (730)
T 1c4k_A 310 CDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQ--AGFSQTSQIHKKDSHIKGQLRYCDHKHFNN 387 (730)
T ss_dssp BSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHS--SCCTTCEEEEEECGGGTTSTTCCCHHHHHH
T ss_pred CCeEEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCC--CCCCCEEEEEecchhhcCcccccCHHHHHH
Confidence 9999999999753 33321 1 1121 1111134679999999986 56665 56656555431100000 122332
Q ss_pred HHh-hccCCCcHHHHHH---HHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhh--cCCeeecCC----------------
Q 045431 310 IVC-TCFNGASNISQAG---GLACLSPEGFKAVHEVIGFYKENTDIIVETFNS--LGFKVYGGK---------------- 367 (433)
Q Consensus 310 ~~~-~~~~~~~~~~q~~---~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~g~~~~~~~---------------- 367 (433)
... .....++....++ +...+.. ..-+++.+++.++.+.+++.|++ .|+.+..+.
T Consensus 388 ~~~~~~stsp~~~~iaal~aA~~~l~~---~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~ 464 (730)
T 1c4k_A 388 SFNLFMSTSPFYPMYAALDVNAAMQEG---EAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMA 464 (730)
T ss_dssp HHHHHSCSSCCHHHHHHHHHHHHHHSH---HHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHT
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHHhhhCCCeEEcccccccccccccccccccc
Confidence 221 1122233333332 3333332 12245567788888888889887 377765432
Q ss_pred ---------------------Cc-cE-----EEEECCC------------CChHHHHHHHHHcCCeEecCCCCCCCCCCC
Q 045431 368 ---------------------NA-PY-----VWVQFPG------------RSSWDVFSEILEKTHVVTTPGSGFGPGGEG 408 (433)
Q Consensus 368 ---------------------~g-~~-----~~~~~~~------------~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~ 408 (433)
.+ ++ +.+..++ ....++...|.+ +||.+.+. +..
T Consensus 465 ~~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e-~GI~v~~~------~~~ 537 (730)
T 1c4k_A 465 NNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRD-HGIIPEKS------DLN 537 (730)
T ss_dssp TCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHH-TTCCCSEE------CSS
T ss_pred ccchhhccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHH-CCcEEEEC------CCC
Confidence 11 11 4566642 345666666655 49988653 346
Q ss_pred eEEEee--ccChhHHHHHHHHHHHhh
Q 045431 409 FIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 409 ~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
.+|+++ +.+.++++.++++|+++.
T Consensus 538 ~ir~~~s~g~t~e~i~~Ll~aL~~i~ 563 (730)
T 1c4k_A 538 SILFLMTPAETPAKMNNLITQLLQLQ 563 (730)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 788885 458899999999998764
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.1e-20 Score=188.76 Aligned_cols=288 Identities=13% Similarity=0.070 Sum_probs=180.0
Q ss_pred CCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccc
Q 045431 105 QGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYG 183 (433)
Q Consensus 105 ~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~ 183 (433)
.-..++++.+++++ +.+ +.+++++|+++++.+ +.+++++||+|++++|+|.++...+...|.
T Consensus 205 g~v~~~ee~la~l~----G~d-~~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~~~~~G~------------ 267 (755)
T 2vyc_A 205 GAFGESEKYAARVF----GAD-RSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGA------------ 267 (755)
T ss_dssp HHHHHHHHHHHHHH----TCS-EEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHHCC------------
T ss_pred cHHHHHHHHHHHHh----CCC-ceEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHcCC------------
Confidence 34466777777776 654 568899999999886 688899999999999999999888888884
Q ss_pred eEEEeecCccC-C----c-----ccC-CCC----CCCc--------cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCE
Q 045431 184 KIEYMRCTAEN-G----F-----FPD-LST----VART--------DIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSI 240 (433)
Q Consensus 184 ~~~~~~~~~~~-~----~-----~~~-~~~----~~~~--------~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~ 240 (433)
.++.++.+.+. + + +.+ +++ .+++ ++++++|| ||||.+.+ +++|+++|++||++
T Consensus 268 ~~v~v~~~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~d---l~~I~~ia~~~~~~ 343 (755)
T 2vyc_A 268 KPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYN---AKEAQDLLEKTSDR 343 (755)
T ss_dssp EEEEECCCBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEEC---HHHHHHHHTTTCSE
T ss_pred EEEEEeCCCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecC---HHHHHHHHHHcCCE
Confidence 66677664321 1 1 111 111 1233 48899998 79999987 78899999999999
Q ss_pred EEEecccccc-ccCCC---CCcccc--cCCCCcceEEEecccccccccccc-eeeeecccc--ccccCCcchhHHHHHHH
Q 045431 241 IVYDSAYALY-ISDDN---PRSIFE--IPGAKEVAIETSSFSKYAGFTGVR-LGWTVIPKE--LLFSDGFPVAKDFNRIV 311 (433)
Q Consensus 241 li~De~~~~~-~~~~~---~~~~~~--~~~~~~~vi~i~S~sK~~~~~G~r-~G~l~~~~~--~~~~~~~~~~~~~~~~~ 311 (433)
+++|++|+.. .+.+. ..++.. .+-..++++++.|+||++ +|++ .|+++++++ .+. ...+....
T Consensus 344 livDeA~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L--~g~~~g~~i~~~~~~~~i~------~~~~~~~~ 415 (755)
T 2vyc_A 344 LHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLL--NALSQASYIHVREGRGAIN------FSRFNQAY 415 (755)
T ss_dssp EEEECTTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSS--SCCTTCEEEEEECCBTCCC------HHHHHHHH
T ss_pred EEEECcCchhcccCcccCCcchhcCCcCCccCCCeEEEECccccc--cCcCCeeeeeecCcccccC------HHHHHHHH
Confidence 9999999853 23221 122211 121245778999999986 5666 567777766 221 12233222
Q ss_pred -hhccCCCcHHHH---HHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-C---------CeeecCC----------
Q 045431 312 -CTCFNGASNISQ---AGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-G---------FKVYGGK---------- 367 (433)
Q Consensus 312 -~~~~~~~~~~~q---~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g---------~~~~~~~---------- 367 (433)
.....+++.+.. .++...+...+ .+.+.+++.++.+.+++.|+++ | +++..+.
T Consensus 416 ~~~~s~sp~~~~iaal~aA~~~l~~~g---g~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (755)
T 2vyc_A 416 MMHATTSPLYAICASNDVAVSMMDGNS---GLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKT 492 (755)
T ss_dssp HHTSCSSCCHHHHHHHHHHHHHHSTHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCE
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccc
Confidence 111222343333 33344444321 2445555566666666666554 3 3332221
Q ss_pred ---------------------------------Cc------cEEEEECCC-----------CChHHHHHHHHHcCCeEec
Q 045431 368 ---------------------------------NA------PYVWVQFPG-----------RSSWDVFSEILEKTHVVTT 397 (433)
Q Consensus 368 ---------------------------------~g------~~~~~~~~~-----------~~~~~~~~~l~~~~gi~v~ 397 (433)
.+ .-+.+.+++ .+...+... |+++||.+.
T Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~-L~~~gI~~e 571 (755)
T 2vyc_A 493 YDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAW-LGRHGIVPT 571 (755)
T ss_dssp EEGGGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHH-HHTTTCCCS
T ss_pred cccccccchhccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHH-HHHCCCEEe
Confidence 12 234565652 233455555 456898875
Q ss_pred CCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHh
Q 045431 398 PGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHL 431 (433)
Q Consensus 398 ~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~ 431 (433)
.. +.+.+|+++ +.+.++++.++++|+++
T Consensus 572 ~~------~~~~v~~~~~~g~t~~~~~~l~~al~~~ 601 (755)
T 2vyc_A 572 RT------TDFQIMFLFSMGVTRGKWGTLVNTLCSF 601 (755)
T ss_dssp EE------CSSEEEEECCTTCCTTTTHHHHHHHHHH
T ss_pred ec------CCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 42 357799985 45899999999888876
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.80 E-value=6.4e-18 Score=159.33 Aligned_cols=321 Identities=16% Similarity=0.187 Sum_probs=199.3
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCC--CC-----CCCCHHHHHHHHHHHhccCCCC-CCcEEE-cCC
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGY--GA-----EQGEKPLRAAIASTFYKDLGIE-EGDIFV-SDG 134 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y--~~-----~~g~~~lr~~la~~l~~~~~~~-~~~i~~-~~G 134 (433)
.++.|+-|. -+.|+.+++++.+.+..... .+.+-| ++ ..-..+.|+.+++++ +++ +++|++ |+|
T Consensus 5 ~~~~f~pgp--t~~~~~V~~a~~~~~~~~~~-~~~s~~~~~hr~~~~~~~~~~~r~~la~ll----~~~~~~~v~f~t~~ 77 (361)
T 3m5u_A 5 RKINFSAGP--STLPLEILEQAQKELCDYQG-RGYSIMEISHRTKVFEEVHFGAQEKAKKLY----ELNDDYEVLFLQGG 77 (361)
T ss_dssp CCEECCSSS--CCCCHHHHHHHHHTSSSGGG-SSSCGGGSCSSSHHHHHHHHHHHHHHHHHH----TCCTTEEEEEESSH
T ss_pred ceEeecCCC--CCCcHHHHHHHHHHHHhccc-CCceeeccCCCCHHHHHHHHHHHHHHHHHh----CCCCCceEEEEcCc
Confidence 456777664 46899999999998764332 222111 11 123456667777776 775 458888 999
Q ss_pred hHHHHHH-HHHhcCCCCEEEEeCCCChhhh--hhHHHhCCcccccccccccceEEEeecCccCCc--ccCCCCCCCccEE
Q 045431 135 AKCDISR-LQIVFGSNVTMAVQDPSYPAYV--DSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGF--FPDLSTVARTDII 209 (433)
Q Consensus 135 ~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i 209 (433)
+++++++ +..++ +||++++..-+..+.. ..++..| .++..++.+.++.+ .++.+-.+++++|
T Consensus 78 ~T~a~n~~~~~~~-~~~~~~~i~~~~~~~~~~~~a~~~G------------~~v~~~~~~~~g~~~~~~~~~l~~~t~lv 144 (361)
T 3m5u_A 78 ASLQFAMIPMNLA-LNGVCEYANTGVWTKKAIKEAQILG------------VNVKTVASSEESNFDHIPRVEFSDNADYA 144 (361)
T ss_dssp HHHHHHHHHHHHC-CSSCEEEEECSHHHHHHHHHHHHTT------------CCEEEEEECTTTTSCSCCCCCCCTTSSEE
T ss_pred HHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHcC------------CceEEEecccCcCCCcCChhhcCCCCCEE
Confidence 9999997 67777 8887633222232322 2223344 36777877655421 2221223578999
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeee
Q 045431 210 FFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWT 289 (433)
Q Consensus 210 ~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l 289 (433)
.+++.+|.||+..+. | ++ +|+++++|.+++... .+..+..+ .+++.|.+|++|.+| +|++
T Consensus 145 ~~~~~e~~tG~~~~~-----i---~~-~~~~~~vD~~q~~g~---~~id~~~~------d~~~~s~~K~~gp~G--~g~l 204 (361)
T 3m5u_A 145 YICSNNTIYGTQYQN-----Y---PK-TKTPLIVDASSDFFS---RKVDFSNI------ALFYGGVQKNAGISG--LSCI 204 (361)
T ss_dssp EEESEETTTTEECSS-----C---CC-CSSCEEEECGGGTTS---SCCCCTTE------EEEEEETTTTSSCTT--CEEE
T ss_pred EEeCCCCCcceeCCc-----c---cc-cCCEEEEEcccccCC---CCCCcccC------CEEEEechhccCCCc--cEEE
Confidence 888888999998762 2 33 499999999988321 13333222 277789999999777 7999
Q ss_pred eccccccccC----CcchhHHHHHH-H-hhccCCCcHHHHHHHHHhc---CcCChhHHHHHHHHHHHHHHHHHHHHhhcC
Q 045431 290 VIPKELLFSD----GFPVAKDFNRI-V-CTCFNGASNISQAGGLACL---SPEGFKAVHEVIGFYKENTDIIVETFNSLG 360 (433)
Q Consensus 290 ~~~~~~~~~~----~~~~~~~~~~~-~-~~~~~~~~~~~q~~~~~~l---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 360 (433)
+++++++... .+.... +... . .....+++.....++.+++ ...+ .++++.++.++.++++.+.|++++
T Consensus 205 ~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~g--G~~~i~~~~~~l~~~l~~~L~~~~ 281 (361)
T 3m5u_A 205 FIRKDMLERSKNKQIPSMLN-YLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQG--GLDKVHEKNSQKATMLYECIDLSN 281 (361)
T ss_dssp EEEHHHHHHHHTCCCCGGGC-HHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHHHHHHTST
T ss_pred EEcHHHHhhhcCCCCCceee-hHHHhhcCCCCCCccHHHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9988775210 111111 1111 1 1122334444444333443 3330 258888899999999999999985
Q ss_pred -C-eeecC---CCccEEEEECCC-CC-hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHh
Q 045431 361 -F-KVYGG---KNAPYVWVQFPG-RS-SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHL 431 (433)
Q Consensus 361 -~-~~~~~---~~g~~~~~~~~~-~~-~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~ 431 (433)
+ ....+ .....+.+.+++ .. ..++... ++++||.+.+|... .+.+|+|+ +++.+|++.+++.|+++
T Consensus 282 g~~~~~~~~~~rs~~ivsf~~~~~~~~~~~~~~~-L~~~gI~~~~g~~~----~g~iRiS~~~~~t~edId~l~~al~~~ 356 (361)
T 3m5u_A 282 GFYKGHADKKDRSLMNVSFNIAKNKDLEPLFVKE-AEEAGMIGLKGHRI----LGGIRASIYNALNLDQVKTLCEFMKEF 356 (361)
T ss_dssp TSEEESSCGGGBCSSEEEEEESSCTTHHHHHHHH-HHHTTEECCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CeeeccCCHHHcCCeEEEEECCCchhhhHHHHHH-HHHCCCEEecCCCc----cCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence 5 44321 123456777774 22 2345544 55669999887542 24699997 44899999999999987
Q ss_pred h
Q 045431 432 Y 432 (433)
Q Consensus 432 l 432 (433)
.
T Consensus 357 ~ 357 (361)
T 3m5u_A 357 Q 357 (361)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.1e-18 Score=162.14 Aligned_cols=316 Identities=11% Similarity=0.081 Sum_probs=193.1
Q ss_pred CCChHHHHHHHHHHHhhccc-CCC---CCCCC--CCCCCHHHHHHHHHHHhccCCCCC-CcEEE-cCChHHHHHH-HHHh
Q 045431 75 EPIPEVITSALAKRSYALST-QEG---YSGYG--AEQGEKPLRAAIASTFYKDLGIEE-GDIFV-SDGAKCDISR-LQIV 145 (433)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~-~~~---~~~Y~--~~~g~~~lr~~la~~l~~~~~~~~-~~i~~-~~G~~~al~~-l~~l 145 (433)
-+.|+.+++++.+.+.+... ..+ ....+ -..-..+.|+.+++++ +++. ++|++ |+|+++++++ +..+
T Consensus 36 t~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll----~~~~~~evif~t~~~T~a~n~ai~~l 111 (386)
T 3qm2_A 36 AMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLL----NIPSNYKVLFCHGGGRGQFAGVPLNL 111 (386)
T ss_dssp CCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHH----TCCTTEEEEEEESCTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHh----CCCCCceEEEEcCCchHHHHHHHHhc
Confidence 46899999999876643321 011 11111 1356789999999998 7754 57888 6999999997 6888
Q ss_pred cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecC--ccCC-cccC-CCC--CCCccEEEEcCCCCccc
Q 045431 146 FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCT--AENG-FFPD-LST--VARTDIIFFCSPNNPTG 219 (433)
Q Consensus 146 ~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~-~~~--~~~~~~i~l~~p~nPtG 219 (433)
+++||+|++..-++.+.. +...+...| .+..++.+ ..+. ..++ ++. .+++++|.+++.+|.||
T Consensus 112 ~~~gd~v~~~~~~~~~~~-~~~~a~~~G----------~v~~v~~~~~~~G~~~~~~~~~~~l~~~t~lV~~~h~et~tG 180 (386)
T 3qm2_A 112 LGDKTTADYVDAGYWAAS-AIKEAKKYC----------APQIIDAKITVDGKRAVKPMREWQLSDNAAYLHYCPNETIDG 180 (386)
T ss_dssp CTTCCEEEEEESSHHHHH-HHHHHTTTS----------EEEEEECEEEETTEEEECCGGGCCCCTTCSCEEECSEETTTT
T ss_pred cCCCCeEEEEeCCHHHHH-HHHHHHHhC----------CeEEEecCcccCCCCCCchHHHhhcCCCCcEEEEECCcCCcC
Confidence 999999876555554432 333333211 35556654 2221 2222 221 36889988888888999
Q ss_pred cC-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecccccccc
Q 045431 220 AA-ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFS 298 (433)
Q Consensus 220 ~~-~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~ 298 (433)
+. .+ +++|. +|+++++|.+++... .|..+..+ + +++.|.+|++|.+| +|+++++++++.+
T Consensus 181 ~~i~p---i~~i~-----~g~~~~vDa~qs~g~---~pidv~~~----~--~~~~s~hK~lGP~G--~g~l~v~~~~~~~ 241 (386)
T 3qm2_A 181 IAIDE---TPDFG-----PEVVVTADFSSTILS---APLDVSRY----G--VIYAGAQKNIGPAG--LTLVIVREDLLGK 241 (386)
T ss_dssp EECCC---CCCCC-----TTCCEEEECTTTTTS---SCCCGGGC----S--EEEEETTTTTCCTT--EEEEEEEGGGCSC
T ss_pred EecCc---hhhhc-----CCCEEEEEcccccCC---CCCCcccc----C--EEEEecccccCCCc--cEEEEECHHHHhh
Confidence 96 66 34443 799999999988321 24444443 2 45678899998777 8999999887532
Q ss_pred CC---cchhHHHHHHH-----hhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeee--cC--
Q 045431 299 DG---FPVAKDFNRIV-----CTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVY--GG-- 366 (433)
Q Consensus 299 ~~---~~~~~~~~~~~-----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~--~~-- 366 (433)
.. +.+.. +.... ..+.+.....+..+++.++...+ .++++.++.++.++++.+.|++.++... .+
T Consensus 242 ~~~~~p~~~~-~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~g--G~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~ 318 (386)
T 3qm2_A 242 AHESCPSILD-YTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQG--GVAAMHKINQQKAELLYGVIDNSDFYRNDVAQAN 318 (386)
T ss_dssp CCTTSCGGGC-HHHHHHC-------CCSHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHTCSSEECCBCGGG
T ss_pred hcccCCcHHH-HHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHH
Confidence 11 11111 11111 11112222333334444443220 3688888999999999999998875321 11
Q ss_pred CCccEEEEECCC-CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec--cChhHHHHHHHHHHHhh
Q 045431 367 KNAPYVWVQFPG-RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF--GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 367 ~~g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~l~~~l~~l~~~l 432 (433)
.....+.+.+++ ..+..+... ++++||.+.+|... .+.+|+|++ ++++|++.+++.|+++.
T Consensus 319 rs~~iv~f~~~~~~~~~~~~~~-L~~~gI~~~~g~~~----~~~iRiS~~~~~t~edId~l~~~l~~~~ 382 (386)
T 3qm2_A 319 RSRMNVPFQLADNTLDKVFLEE-SFAAGLHALKGHRV----VGGMRASIYNAMPIEGVKALTDFMIDFE 382 (386)
T ss_dssp BCSSEEEEEESSGGGHHHHHHH-HHHTTEECCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred cCceEEEEECCCccccHHHHHH-HHHCCCEEeCCCCC----cCeEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 233467777774 123455555 45669999887643 245999974 48999999999999875
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=5.4e-18 Score=171.77 Aligned_cols=289 Identities=14% Similarity=0.077 Sum_probs=173.9
Q ss_pred CCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccc
Q 045431 103 AEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEK 181 (433)
Q Consensus 103 ~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~ 181 (433)
+..-..++++.+|+++ +++ ..+++++|++.++.+ +.++++|||.|++++++|.++...+...|.
T Consensus 193 ~~g~i~eaE~~lA~~f----Ga~-~a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~~l~lsGa---------- 257 (715)
T 3n75_A 193 HSGPHKEAEQYIARVF----NAD-RSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMMMSDV---------- 257 (715)
T ss_dssp TBTHHHHHHHHHHHHH----TCS-EEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHSCC----------
T ss_pred CcHHHHHHHHHHHHHh----CCC-CceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHHHHHHcCC----------
Confidence 3445678999999997 653 467889998888876 688999999999999999999999998884
Q ss_pred cceEEEeecCccCCccc---------C---CC----CCCCc---cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEE
Q 045431 182 YGKIEYMRCTAENGFFP---------D---LS----TVART---DIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIV 242 (433)
Q Consensus 182 ~~~~~~~~~~~~~~~~~---------~---~~----~~~~~---~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li 242 (433)
.+++++.+.+ .+.. + ++ ..+++ +++++++| ||+|.+++ +++|.++|+++ .++
T Consensus 258 --~pv~v~~~~~-~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~d---l~~I~ela~~~--~li 328 (715)
T 3n75_A 258 --TPIYFRPTRN-AYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYN---TDFIKKTLDVK--SIH 328 (715)
T ss_dssp --EEEEECCCBC-TTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEEC---HHHHHHHCCCS--EEE
T ss_pred --EEEEEecccc-ccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCC---HHHHHHHhCcC--cEE
Confidence 6666665432 1110 1 11 11233 48899999 99999998 56666777665 379
Q ss_pred Eeccccccc-cCCCCCcccccCC--CCcce-EEEeccccccccccc-ceeeeeccccccccCCcchhHHHHHHHhhc-cC
Q 045431 243 YDSAYALYI-SDDNPRSIFEIPG--AKEVA-IETSSFSKYAGFTGV-RLGWTVIPKELLFSDGFPVAKDFNRIVCTC-FN 316 (433)
Q Consensus 243 ~De~~~~~~-~~~~~~~~~~~~~--~~~~v-i~i~S~sK~~~~~G~-r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 316 (433)
+||+|+... +.+.......+.. ..|.+ +++.|+||+++ |+ ..|++++++++. ...+.+..... +.
T Consensus 329 vDEAH~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~--gltqgs~i~v~~~i~-------~~~~~~~~~~~~ST 399 (715)
T 3n75_A 329 FDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLA--AFSQASMIHVKGDVN-------EETFNEAYMMHTTT 399 (715)
T ss_dssp EECTTCTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSS--CCTTCEEEEEESCCC-------HHHHHHHHHHTSCS
T ss_pred EccccccccccCCccccccccccCcCCCEEEEEEeccccccc--CCCCeeEEEeCchhh-------HHHHHHHHHhhcCC
Confidence 999998643 3322111112211 12443 66999999974 54 358888877642 23444433333 23
Q ss_pred CCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-----C--CeeecCC----------------------
Q 045431 317 GASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-----G--FKVYGGK---------------------- 367 (433)
Q Consensus 317 ~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----g--~~~~~~~---------------------- 367 (433)
+++.+..++...+++......-+++++++.++.+.+++.|++. | +.+..+.
T Consensus 400 Spsy~~~AsldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~ 479 (715)
T 3n75_A 400 SPHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNI 479 (715)
T ss_dssp SCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTC
T ss_pred CchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCccccccccccc
Confidence 3444444433333321110112445666777777777777654 2 2332211
Q ss_pred -Ccc------EEEEECCC-----------CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEE--eeccChhHHHHHHHH
Q 045431 368 -NAP------YVWVQFPG-----------RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRV--SAFGHRGNVLEACKR 427 (433)
Q Consensus 368 -~g~------~~~~~~~~-----------~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi--~~~~~~~~l~~~l~~ 427 (433)
.+. =+.+..++ .....+. ..|+++||.+.-.+. ..+=+ +++.+.+++++++++
T Consensus 480 ~~~~~~~Dp~Kl~i~~~~~~~~G~~~~~Gi~g~~~~-~~L~~~~I~~E~~d~------~~vl~l~s~g~~~~~~~~L~~a 552 (715)
T 3n75_A 480 DNEHMYLDPIKVTLLTPGMEKDGTMSDFGIPASIVA-KYLDEHGIVVEKTGP------YNLLFLFSIGIDKTKALSLLRA 552 (715)
T ss_dssp CSSSEEECTTEEEEECSCBCTTSCBCSSCCCHHHHH-HHHHHTTCCCSEEET------TEEEEECCTTCCHHHHHHHHHH
T ss_pred ccCcccCCCeEEEEEcCCCCCCCccccCCCcHHHHH-HHHHHCCCEEEecCC------CcEEEEeCCCCCHHHHHHHHHH
Confidence 010 14555543 2233444 445677998865432 33323 245588888888888
Q ss_pred HHHh
Q 045431 428 FKHL 431 (433)
Q Consensus 428 l~~~ 431 (433)
|.++
T Consensus 553 L~~~ 556 (715)
T 3n75_A 553 LTDF 556 (715)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=7.4e-17 Score=156.60 Aligned_cols=352 Identities=11% Similarity=0.079 Sum_probs=212.2
Q ss_pred HHHHHhcCCCCceEEecCC--CCCC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCC-CCCc
Q 045431 53 KAAHMLKYPDAEVISLGIG--DTTE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGI-EEGD 128 (433)
Q Consensus 53 ~~~~~~~~~~~~~i~l~~g--~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~-~~~~ 128 (433)
++....+.+++..||+..| ...+ ..+|.+.+++.+++.+.. .....+.+.....+|-+.|++.. +. ..+.
T Consensus 54 ~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~--~~~~~~~~~~~~~~lae~L~~~~----p~~~~~~ 127 (456)
T 4atq_A 54 DGGIIRDVDGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFT--HTCFMVTPYEGYVAVTEQLNRLT----PGDHAKR 127 (456)
T ss_dssp ETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCS--CCTTTTSCCHHHHHHHHHHHHHS----SCSSCEE
T ss_pred ecCEEEeCCCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhcc--CcccCccCcHHHHHHHHHHHHhC----CCCCCcE
Confidence 3344455677889998665 3333 367999999999987642 11122222333344555555543 33 3567
Q ss_pred EEEcCChHHHHHH-H--HHhcCCCCEEEEeCCCChhhhhhHHHhCCcc-c-ccccccccceEEEeecCccC-CcccC---
Q 045431 129 IFVSDGAKCDISR-L--QIVFGSNVTMAVQDPSYPAYVDSSVIMGQTG-E-FQKDAEKYGKIEYMRCTAEN-GFFPD--- 199 (433)
Q Consensus 129 i~~~~G~~~al~~-l--~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~-~-~~~~~~~~~~~~~~~~~~~~-~~~~~--- 199 (433)
+++++++++|... + ........+|+..+.+|++............ . ...++.....+..+|..... ....+
T Consensus 128 v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~ 207 (456)
T 4atq_A 128 TVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITG 207 (456)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCH
T ss_pred EEEeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccH
Confidence 9999999999885 4 2223445788889999988654443332211 1 11122222344555542110 00000
Q ss_pred C----------CC---CCCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCC
Q 045431 200 L----------ST---VARTDIIFFCSP-NNPTGAA-ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPG 264 (433)
Q Consensus 200 ~----------~~---~~~~~~i~l~~p-~nPtG~~-~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 264 (433)
. +. ..++.+ ++..| +.-.|.+ .+++.+++|.++|++||+++|.||++.++...|.......+.-
T Consensus 208 ~~~~~~~~~~~e~~~~~~~iAA-vivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv 286 (456)
T 4atq_A 208 AEAAKRAITMIEKQIGGDQVAA-IIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGV 286 (456)
T ss_dssp HHHHHHHHHHHHHHTCGGGEEE-EEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTC
T ss_pred HHHHHHHHHHHHHhhcCCceEE-EEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCC
Confidence 0 00 123444 44566 5556754 5678999999999999999999999998766665444434433
Q ss_pred CCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHH
Q 045431 265 AKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGF 344 (433)
Q Consensus 265 ~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 344 (433)
.+| ++ +++|.+| .|+.+|.+++++++. +.+......++++.++++.+++.+.|+.... +++.++
T Consensus 287 ~PD-iv---t~gK~lg-gg~P~~av~~~~~i~--------~~~~~~~~~~Tf~gnpla~aaala~L~~i~~---~~l~~~ 350 (456)
T 4atq_A 287 VPD-II---TMAKGIA-GGLPLSAITGRADLL--------DAVHPGGLGGTYGGNPVACAAALAAIDTMEQ---HDLNGR 350 (456)
T ss_dssp CCS-EE---EECGGGG-TTSSCEEEEEEHHHH--------TTSCTTSSCCSSSSCHHHHHHHHHHHHHHHH---TTHHHH
T ss_pred CCc-hh---hhhhccc-CcCCceeeEecHHHH--------hcccccCCCCCCCCChHHHHhhHHHHHHHhh---ccHHHH
Confidence 355 23 6789998 999999999998875 3333334556777899999998888863221 223344
Q ss_pred HHHHHHHHHHHHhhc----C---Cee---ecCCCccEEEEECCCC-----C---hHHHHHHHHHcCCeEecCCCCCCCCC
Q 045431 345 YKENTDIIVETFNSL----G---FKV---YGGKNAPYVWVQFPGR-----S---SWDVFSEILEKTHVVTTPGSGFGPGG 406 (433)
Q Consensus 345 ~~~~~~~l~~~l~~~----g---~~~---~~~~~g~~~~~~~~~~-----~---~~~~~~~l~~~~gi~v~~g~~f~~~~ 406 (433)
.++.-+++.+.|+++ . ..+ +. ..|+++-+++... + ...+...+++ +|+.+.+... .
T Consensus 351 ~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VR-G~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~-~Gvl~~~~g~----~ 424 (456)
T 4atq_A 351 ARHIEELALGKLRELAAELSAGGGSVVGDIR-GRGAMLAIELVQPGSKEPNAELTKAVAAACLK-EGVIILTCGT----Y 424 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-----CEEEEE-EETTEEEEEEBCTTSCCBCHHHHHHHHHHHHH-TTEECEEECT----T
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCceEEee-ecceEEEEEEecCCCCCcCHHHHHHHHHHHHH-CCCEEEecCC----C
Confidence 444445555544432 1 111 12 1466777776311 1 2345555555 4999876432 2
Q ss_pred CCeEEEe--eccChhHHHHHHHHHHHhhC
Q 045431 407 EGFIRVS--AFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 407 ~~~iRi~--~~~~~~~l~~~l~~l~~~l~ 433 (433)
.+.|||. +..+++++++++++|.++|+
T Consensus 425 ~~~irl~PpL~it~~~id~~l~~l~~al~ 453 (456)
T 4atq_A 425 GNVIRLLPPLVISDELLIDGLEVLAAAIK 453 (456)
T ss_dssp SCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 3679999 56799999999999998874
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.4e-17 Score=158.26 Aligned_cols=333 Identities=13% Similarity=0.112 Sum_probs=199.9
Q ss_pred HHHhcCCCCceEEecCCCC--CC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEE
Q 045431 55 AHMLKYPDAEVISLGIGDT--TE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFV 131 (433)
Q Consensus 55 ~~~~~~~~~~~i~l~~g~~--~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~ 131 (433)
....+.+++..||+..|.- .+ ..+|.+.+++.+++.+.. +...+.....+|.+.|++.+ + ..+.+++
T Consensus 79 ~~l~D~dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~-----~~~~~~~~~~~lae~l~~~~----p-~~~~v~f 148 (454)
T 4ao9_A 79 AALWDADGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGI-----NLTGHNLLEGRLARLICERF----P-QIEQLRF 148 (454)
T ss_dssp TEEEETTCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCS-----CCCSEESSHHHHHHHHHHHS----T-TCSEEEE
T ss_pred CEEEECCCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcCC-----CccCCcHHHHHHHHHHHHhC----C-CCCEEEE
Confidence 3344566788999866542 23 367999999999987531 11122344566777777764 3 4689999
Q ss_pred cCChHHHHHH-HHH--hcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCC-CCcc
Q 045431 132 SDGAKCDISR-LQI--VFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV-ARTD 207 (433)
Q Consensus 132 ~~G~~~al~~-l~~--l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 207 (433)
++++++|... +.. .....++|+..+.+|.+........... ... -.....+|.++.......+++. +++.
T Consensus 149 ~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~-----~~~-~~~~~~~p~nd~~~l~~~l~~~~~~iA 222 (454)
T 4ao9_A 149 TNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSP-----TTV-PFDFLVLPYNDAQTARAQIERHGPEIA 222 (454)
T ss_dssp ESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCT-----TSC-CSEEEEECTTCHHHHHHHHHHTGGGEE
T ss_pred eCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccC-----ccC-CCCcccCCCchHHHHHHHHhhcCCceE
Confidence 9999999875 422 2234568888888887754322111100 000 0133344443211111112222 3455
Q ss_pred EEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccc
Q 045431 208 IIFFCSP-NNPTGAA-ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVR 285 (433)
Q Consensus 208 ~i~l~~p-~nPtG~~-~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r 285 (433)
+|+ ..| +...|.+ .+++.+++|.++|++||+++|.||++.. ..+.......+.-.+| +-+++|.+| .|+.
T Consensus 223 avI-vEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG--R~G~~~a~e~~gv~PD----i~t~gK~lg-gG~P 294 (454)
T 4ao9_A 223 VVL-VEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS--RLAPHGLANKLGIRSD----LTTLGKYIG-GGMS 294 (454)
T ss_dssp EEE-ECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG--GGSTTCHHHHHTCCCS----EEEEEGGGG-TTSS
T ss_pred EEE-eccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC--CCccccchhccCCCCc----EEEeccccC-CCCc
Confidence 544 466 5556755 4678899999999999999999999973 2222221122222344 237899998 8999
Q ss_pred eeeeeccccccccCCcchhHHHH----HHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhh---
Q 045431 286 LGWTVIPKELLFSDGFPVAKDFN----RIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNS--- 358 (433)
Q Consensus 286 ~G~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~--- 358 (433)
+|.++++++++ +.+. .+....+.+.++++.+++.+.|+.... ++..++++++.++|.+.|++
T Consensus 295 iga~~~~~ei~--------~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~---~~~~~~~~~~g~~l~~~L~~l~~ 363 (454)
T 4ao9_A 295 FGAFGGRADVM--------ALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFT---PEAAGALAERGEALRARLNALCA 363 (454)
T ss_dssp CEEEEECHHHH--------GGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeeeHHHHH--------HHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhc---cChhHHHHHHHHHHHHHHHHHHh
Confidence 99999998885 2221 122344556788988888888763322 34455556666666666554
Q ss_pred -cCCee-ecCCCccEEEEECCCC-----------C---hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHH
Q 045431 359 -LGFKV-YGGKNAPYVWVQFPGR-----------S---SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVL 422 (433)
Q Consensus 359 -~g~~~-~~~~~g~~~~~~~~~~-----------~---~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~ 422 (433)
+++.. +. .-|.++.+.+... + ...++..++++ ||.+.|. +++.++...+++||+
T Consensus 364 ~~~~~~~vr-g~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~-Gv~~~p~--------~~~~~s~~~T~~dId 433 (454)
T 4ao9_A 364 NEGVAMQFT-GIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNE-DIYSSPR--------GFVVLSLPLTDADID 433 (454)
T ss_dssp HHTBSCEEE-EETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHT-TEECCTT--------CEEECCTTCCHHHHH
T ss_pred hCCCCEEEe-eeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHC-CEEEcCC--------CCEEEeCCCCHHHHH
Confidence 34322 12 2355555655310 1 12344555655 9999763 345566677999999
Q ss_pred HHHHHHHHhh
Q 045431 423 EACKRFKHLY 432 (433)
Q Consensus 423 ~~l~~l~~~l 432 (433)
+++++|++++
T Consensus 434 ~~l~al~~~l 443 (454)
T 4ao9_A 434 RYVAAIGSFI 443 (454)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999876
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=99.74 E-value=3.4e-16 Score=152.52 Aligned_cols=346 Identities=11% Similarity=0.061 Sum_probs=207.9
Q ss_pred HhcCCCCceEEecCCCCC--C-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcC
Q 045431 57 MLKYPDAEVISLGIGDTT--E-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSD 133 (433)
Q Consensus 57 ~~~~~~~~~i~l~~g~~~--~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~ 133 (433)
..+.+++..||+..|.-. + ..+|.+.+++.+++.+.......+.+ ..+....+|+.|.+..+.+.+.|++++
T Consensus 61 l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~~~~~~-----~~~~~~~lAe~L~~~~p~~~~~v~f~~ 135 (473)
T 4e3q_A 61 IVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAFFGR-----MSDQTVMLSEKLVEVSPFDSGRVFYTN 135 (473)
T ss_dssp EEETTCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCCCCCTTE-----EEHHHHHHHHHHHHHSSCSSCEEEEES
T ss_pred EEeCCCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhcccccccccc-----cCHHHHHHHHHHHhhCCCCccEEEEeC
Confidence 345667889998776532 2 36799999999999864311111111 123344455555443355667999999
Q ss_pred ChHHHHHHHHHhc--------CCC-CEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCc------cCCccc
Q 045431 134 GAKCDISRLQIVF--------GSN-VTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTA------ENGFFP 198 (433)
Q Consensus 134 G~~~al~~l~~l~--------~~g-d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 198 (433)
++++|.+....+. +++ .+|+....+|++................++........++... ......
T Consensus 136 sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 215 (473)
T 4e3q_A 136 SGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEE 215 (473)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHH
T ss_pred chHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhh
Confidence 9999988632221 233 5788888888885544333332222222222222333333211 111000
Q ss_pred --------CCCC-----CCCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccC
Q 045431 199 --------DLST-----VARTDIIFFCSP-NNPTGAA-ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIP 263 (433)
Q Consensus 199 --------~~~~-----~~~~~~i~l~~p-~nPtG~~-~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~ 263 (433)
++++ ..+.-+.++.-| +.-.|++ .+++.+++|.++|++||+++|.||+...|...+.......+.
T Consensus 216 ~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~g 295 (473)
T 4e3q_A 216 QFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYD 295 (473)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccchhHHHhcC
Confidence 0110 122234455566 5556755 467799999999999999999999999887666544333343
Q ss_pred CCCcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHHH-------HhhccCCCcHHHHHHHHHhcCcCCh
Q 045431 264 GAKEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNRI-------VCTCFNGASNISQAGGLACLSPEGF 335 (433)
Q Consensus 264 ~~~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~~~~~ 335 (433)
-.+| ++ +++|.++ .| +.+|.+++++++. +.+... ....+.+.++++.+++.+.|+....
T Consensus 296 v~PD-i~---t~~K~l~-gG~~Pl~av~~~~~i~--------~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~~ 362 (473)
T 4e3q_A 296 FTPD-AI---ISSKNLT-AGFFPMGAVILGPELS--------KRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMN 362 (473)
T ss_dssp CCCS-EE---EECGGGG-TTSSCCEEEEECHHHH--------HHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHHH
T ss_pred CCCC-hH---Hhccccc-CCCCCcccccccHHHH--------HHhccccccccccccCCCCCCCcchhhhhhhhhhhhcc
Confidence 3455 23 6899997 66 8999999998884 444321 2345566789999888888763221
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhc----CCeeecCCCccEEEEECCC-C----------C-hHHHHHHHHHcCCeEecCC
Q 045431 336 KAVHEVIGFYKENTDIIVETFNSL----GFKVYGGKNAPYVWVQFPG-R----------S-SWDVFSEILEKTHVVTTPG 399 (433)
Q Consensus 336 ~~~~~~~~~~~~~~~~l~~~l~~~----g~~~~~~~~g~~~~~~~~~-~----------~-~~~~~~~l~~~~gi~v~~g 399 (433)
+++.++.++..+++.+.|+++ .+.-+.. .|+++-+++.. . . ...+...++ ++|+.+.|.
T Consensus 363 ---~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vRG-~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~-~~Gll~~~~ 437 (473)
T 4e3q_A 363 ---EGLAENVRRLAPRFEERLKHIAERPNIGEYRG-IGFMWALEAVKDKASKTPFDGNLSVSERIANTCT-DLGLICRPL 437 (473)
T ss_dssp ---SSHHHHHHHHHHHHHHHHHHHTTSTTEEEEEE-ETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHH-HTTEECEEE
T ss_pred ---ccHHHHHHHHHHHHHHHHHHHhcCCCeeEEee-cceEEEEEEecCccccccccccHHHHHHHHHHHH-HCCcEEEec
Confidence 233444555556666666553 2322222 45666666531 0 1 234555555 459999863
Q ss_pred CCCCCCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 400 SGFGPGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 400 ~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
.+.+||+ +..+++++++++++|.++|
T Consensus 438 -------g~~i~l~PPL~it~~eid~~~~~l~~al 465 (473)
T 4e3q_A 438 -------GQSVVLCPPFILTEAQMDEMFDKLEKAL 465 (473)
T ss_dssp -------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred -------CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 2579998 5679999999999998876
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.3e-14 Score=133.55 Aligned_cols=348 Identities=12% Similarity=0.123 Sum_probs=207.1
Q ss_pred eEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCC--CCCC-CCCCHHHHHHHHHHHhccCCCCCC----cEEEcCChHH
Q 045431 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYS--GYGA-EQGEKPLRAAIASTFYKDLGIEEG----DIFVSDGAKC 137 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~Y~~-~~g~~~lr~~la~~l~~~~~~~~~----~i~~~~G~~~ 137 (433)
-|+|=-.++ -.++.+.+++-..+.+... .++. +|.. ..-..++.....+..++.++++.. ||..-||+++
T Consensus 56 ~ieLIASEN--~~S~aV~~a~gS~ltnKYa-EGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~A 132 (490)
T 3ou5_A 56 GLELIASEN--FCSRAALEALGSCLNNKYS-EGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPA 132 (490)
T ss_dssp SEECCTTCC--CCCHHHHHHHTSGGGTCCC-CC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHH
T ss_pred CceEecCCC--cCCHHHHHHhcCccccccc-CCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHH
Confidence 477766665 3678888888777764322 2222 2222 222333333333333446788766 8999999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC------CCCccEEEE
Q 045431 138 DISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST------VARTDIIFF 211 (433)
Q Consensus 138 al~~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~l 211 (433)
.+....++++|||+|+-.+..+.++..-........ ......+.+.+.++++++.+ ..|+++ ..+||+|+.
T Consensus 133 N~avy~All~PGD~ilg~~l~~GGHltHg~~~~~~~--v~~sg~~~~~~~Y~vd~~t~-~IDyd~~~~~A~~~kPklIi~ 209 (490)
T 3ou5_A 133 NLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKR--ISATSIFFESMPYKLNPKTG-LIDYNQLALTARLFRPRLIIA 209 (490)
T ss_dssp HHHHHHHHCC-CCCEECBC------------------------------CBCEETTTT-EECHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHcCCCCEEEecccCCCCcccccccCCCcc--cccccccccccccccCCCCC-cccHHHHHHHHhhcCCCeEEE
Confidence 999999999999999999988877643221000000 00111123566666665533 334332 358998886
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCCEEEEecccc-ccccCCC-CCcccccCCCCcceEEEecccccccccccceeee
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYA-LYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWT 289 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~-~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l 289 (433)
-...+|. .++ .+++.++|.+.|.++++|-+|- ++...+. |.|+.. . .|+.+|.+|+| +|-|-|.|
T Consensus 210 G~SaY~r--~id---~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~~-A-----DvVTtTTHKTL--rGPrGG~I 276 (490)
T 3ou5_A 210 GTSAYAR--LID---YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH-A-----DIVTTTTHKTL--RGARSGLI 276 (490)
T ss_dssp CCSSCCS--CCC---HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGT-C-----SEEEEESSSTT--CSCSCEEE
T ss_pred CCccCcc--ccC---HHHHHHHHhhcccEEEechhhhhhhhcccccCCcccc-c-----eEEeccccccc--cCCCceEE
Confidence 4444543 234 7888888999999999999986 4666554 444422 1 27788999998 79999999
Q ss_pred eccccccccC-------CcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-hHHHHHHHHHHHHHHHHHHHHhhcCC
Q 045431 290 VIPKELLFSD-------GFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-KAVHEVIGFYKENTDIIVETFNSLGF 361 (433)
Q Consensus 290 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~g~ 361 (433)
.++++....+ ...+.+.+.+.......+.+.+...|+.+.-..+.. ...+...+++.++.+.|.+.|.+.|+
T Consensus 277 l~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~G~ 356 (490)
T 3ou5_A 277 FYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGY 356 (490)
T ss_dssp EEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EeccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9887532100 012356676665555555666666555544221211 34577788899999999999999999
Q ss_pred eeec-CCCccEEEEECCC-CChHHHHHHHHHcCCeEec----CCCCCCCCCCCeEEEee------ccChhHHHHHHHHHH
Q 045431 362 KVYG-GKNAPYVWVQFPG-RSSWDVFSEILEKTHVVTT----PGSGFGPGGEGFIRVSA------FGHRGNVLEACKRFK 429 (433)
Q Consensus 362 ~~~~-~~~g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~----~g~~f~~~~~~~iRi~~------~~~~~~l~~~l~~l~ 429 (433)
.++. ......+++++.+ ......++.+|++.||.++ |++. .+..++.|||.. ...++|+++..+-|.
T Consensus 357 ~vvsGgTdnHlvLvDl~~~g~tG~~ae~~Le~agItvNkN~iP~D~-sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~ 435 (490)
T 3ou5_A 357 SLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDR-SAITPGGLRLGAPALTSRQFREDDFRRVVDFID 435 (490)
T ss_dssp EEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCC-CSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHH
T ss_pred eeecCCCCceEEEEeccccCCCHHHHHHHHHHcCcEECCCCCCCCC-CCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHH
Confidence 9864 3344578888862 2234556677778899985 5542 233456799994 236888888887776
Q ss_pred Hhh
Q 045431 430 HLY 432 (433)
Q Consensus 430 ~~l 432 (433)
+++
T Consensus 436 ~~l 438 (490)
T 3ou5_A 436 EGV 438 (490)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.1e-15 Score=156.58 Aligned_cols=212 Identities=9% Similarity=0.044 Sum_probs=132.4
Q ss_pred CccEEEEcCC--CCccccCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccc
Q 045431 205 RTDIIFFCSP--NNPTGAAA-TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGF 281 (433)
Q Consensus 205 ~~~~i~l~~p--~nPtG~~~-~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~ 281 (433)
++.+ ++..| ++..|+.. +++.+++|.++|++||+++|.||++..|...|.......+.-.+| + .+++|.++
T Consensus 594 ~iaa-vi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PD-i---itlsK~L~- 667 (831)
T 4a0g_A 594 HVGA-LIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPD-I---ACFAKLLT- 667 (831)
T ss_dssp EEEE-EEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSCCS-E---EEECGGGG-
T ss_pred cEEE-EEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCCCc-E---EEEecccc-
Confidence 3444 44566 68888665 888999999999999999999999998866665443323322234 2 37999997
Q ss_pred cc-cceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCc---CCh-hHHHHHHHHHHHH-HHHHHHH
Q 045431 282 TG-VRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSP---EGF-KAVHEVIGFYKEN-TDIIVET 355 (433)
Q Consensus 282 ~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~-~~~~~~~~~~~~~-~~~l~~~ 355 (433)
.| +++|+++++++++..-... .....+....+.+.++++++++.+.|+. ... +++.+..+++++. .+.+.+.
T Consensus 668 gG~~Plgav~~~~~i~~~~~~~--~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~l~~~l~~~ 745 (831)
T 4a0g_A 668 GGMVPLAVTLATDAVFDSFSGD--SKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQ 745 (831)
T ss_dssp TTSSCCEEEEECHHHHHTTCSS--CGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCCSCHHHHHH
T ss_pred cCccCcEEEEECHHHHHHHhcc--cccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67 7999999998875210000 0001122345566789999888887752 111 1111111111110 1234445
Q ss_pred Hhhc-CCeeecCCCccEEEEECCCC---------ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe--eccChhHHHH
Q 045431 356 FNSL-GFKVYGGKNAPYVWVQFPGR---------SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS--AFGHRGNVLE 423 (433)
Q Consensus 356 l~~~-g~~~~~~~~g~~~~~~~~~~---------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~~~l~~ 423 (433)
+.++ .+..+.+ .|.++.+.+... ....+...++ ++||.++|+ .+.+||+ +..+++++++
T Consensus 746 l~~~~~v~~vrg-~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~-e~Gv~v~p~-------g~~lrl~pp~~~t~e~id~ 816 (831)
T 4a0g_A 746 ISSHSAVQRVVV-IGTLFALELKADASNSGYASLYAKSLLIMLR-EDGIFTRPL-------GNVIYLMCGPCTSPEICRR 816 (831)
T ss_dssp HHHSTTEEEEEE-ETTEEEEEEC---------CHHHHHHHHHHH-HTTEECCCB-------TTEEEEECCTTCCHHHHHH
T ss_pred HhhCCCceeEee-cccEEEEEEecCccccccchHHHHHHHHHHH-HCCcEEEec-------CCEEEEECCCCCCHHHHHH
Confidence 5555 3333332 567777777421 1234555555 459999875 2689998 4669999999
Q ss_pred HHHHHHHhhC
Q 045431 424 ACKRFKHLYK 433 (433)
Q Consensus 424 ~l~~l~~~l~ 433 (433)
++++|.++++
T Consensus 817 ~~~~l~~~l~ 826 (831)
T 4a0g_A 817 LLTKLYKRLG 826 (831)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999998764
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=8.9e-12 Score=117.75 Aligned_cols=280 Identities=12% Similarity=0.041 Sum_probs=162.2
Q ss_pred CCC-CCcEEEcCChHHHHHH-HHHhcCC----CCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccC-C
Q 045431 123 GIE-EGDIFVSDGAKCDISR-LQIVFGS----NVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAEN-G 195 (433)
Q Consensus 123 ~~~-~~~i~~~~G~~~al~~-l~~l~~~----gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~ 195 (433)
|++ ....++++|+|.+..+ +.+.+++ ||.|+++..+|.+....+..+|. .+++++...+. .
T Consensus 130 G~~~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~Gl------------~Pv~V~p~~d~~~ 197 (501)
T 3hl2_A 130 GVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGF------------EPVVIENVLEGDE 197 (501)
T ss_dssp TCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTC------------EEEEECEEEETTE
T ss_pred CCCCCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHHcCC------------eEEEEeeeecccc
Confidence 554 3468999999977664 6777764 49999999999999999999995 44444432111 1
Q ss_pred cccCCC-------CC-CCccEEEEcCC-CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccc-cCCC-CCcccccCC
Q 045431 196 FFPDLS-------TV-ARTDIIFFCSP-NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYI-SDDN-PRSIFEIPG 264 (433)
Q Consensus 196 ~~~~~~-------~~-~~~~~i~l~~p-~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~-~~~~-~~~~~~~~~ 264 (433)
...+++ +. .+..++++++| .|-.+.+-+ +++|+++|++||+++++|++|+... +... +.+..++..
T Consensus 198 ~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~dd---I~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~Gr 274 (501)
T 3hl2_A 198 LRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDR---LEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGR 274 (501)
T ss_dssp EEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSC
T ss_pred cCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCccccc---HHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCC
Confidence 222221 11 13334444444 443334344 9999999999999999999998632 2211 223333321
Q ss_pred CCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHH
Q 045431 265 AKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGF 344 (433)
Q Consensus 265 ~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 344 (433)
-.+++-|.+|++- .-+.-|.+..+++-. .+.+..... ...++.++... ...+.+.+.+.++++.++
T Consensus 275 ---AD~vVqS~HK~ll-vpIGG~ii~~~d~e~-------l~~~~~~yP--Gr~S~Spsldl-~~tLL~lGr~Gy~~ll~e 340 (501)
T 3hl2_A 275 ---IDAFVQSLDKNFM-VPVGGAIIAGFNDSF-------IQEISKMYP--GRASASPSLDV-LITLLSLGSNGYKKLLKE 340 (501)
T ss_dssp ---CCEEEEEHHHHHC-CCSSCEEEEESCHHH-------HHHHHHTSC--SCBCSHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred ---CcEEEecccccce-eecCceEEEeCCHHH-------HHHHHHhCC--CCCCCcHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 1277889999884 433333443443221 133322111 11123333322 233333444556788888
Q ss_pred HHHHHHHHHHHHhhc----CCeeecCC-CccEEEEECCCC-----C-hHHHHHHHHHcCCe---E-ecCCC---------
Q 045431 345 YKENTDIIVETFNSL----GFKVYGGK-NAPYVWVQFPGR-----S-SWDVFSEILEKTHV---V-TTPGS--------- 400 (433)
Q Consensus 345 ~~~~~~~l~~~l~~~----g~~~~~~~-~g~~~~~~~~~~-----~-~~~~~~~l~~~~gi---~-v~~g~--------- 400 (433)
..++.+++.+.|+++ |-++.... ...-+.+.+... . ...+-..|..+ +| . |.+|.
T Consensus 341 ~~ela~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r-~vsG~Rvv~~~~~~~i~g~~f 419 (501)
T 3hl2_A 341 RKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTR-QVSGARVVPLGSMQTVSGYTF 419 (501)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCTTTSCHHHHHHHHHHHT-TCCSCEEECTTCCEEETTEEE
T ss_pred HHHHHHHHHHHHHHHHHhcChhhcCCCCCceeEEEecccccccccccHHHHHHHHHhc-CCCcceeecCCCceEECCeee
Confidence 888888888888774 55554432 334566666522 1 23344444443 33 3 34555
Q ss_pred -CCCCC----CCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 401 -GFGPG----GEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 401 -~f~~~----~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
.|+.. ...++=++. ..+.+|++..+++|.+++
T Consensus 420 ~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~ 458 (501)
T 3hl2_A 420 RGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCL 458 (501)
T ss_dssp SSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred cCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 44432 134676663 558999999999999886
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-10 Score=111.60 Aligned_cols=298 Identities=12% Similarity=0.034 Sum_probs=163.2
Q ss_pred CCHHHHHHHHHHHhccCCCCC-CcEEEcCChHHHHH-HHHHhcCC----CCEEEEeCCCChhhhhhHHHhCCcccccccc
Q 045431 106 GEKPLRAAIASTFYKDLGIEE-GDIFVSDGAKCDIS-RLQIVFGS----NVTMAVQDPSYPAYVDSSVIMGQTGEFQKDA 179 (433)
Q Consensus 106 g~~~lr~~la~~l~~~~~~~~-~~i~~~~G~~~al~-~l~~l~~~----gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~ 179 (433)
+...+.+.+..|+.+.+|++. ...++++|+|.+.. ++...+++ ++.|++++.+|.++..++..+|.
T Consensus 95 ~~~~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~Gl-------- 166 (450)
T 3bc8_A 95 LLNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGF-------- 166 (450)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHHcCC--------
Confidence 345667777777776445543 34588888885544 45666554 89999999999999999999995
Q ss_pred cccceEEEeecCcc-CCcccCCC-------CCC-CccEEEEcCCC-CccccCCCHHHHHHHHHHHHHcCCEEEEeccccc
Q 045431 180 EKYGKIEYMRCTAE-NGFFPDLS-------TVA-RTDIIFFCSPN-NPTGAAATREQLTRLVQFAKDNGSIIVYDSAYAL 249 (433)
Q Consensus 180 ~~~~~~~~~~~~~~-~~~~~~~~-------~~~-~~~~i~l~~p~-nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~ 249 (433)
.++.++...+ .....+++ +.+ +.+++++++|. +.+|.+-+ +++|+++|++||+++++|++|+.
T Consensus 167 ----~p~~v~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~dd---l~~Ia~ia~~~gi~l~VD~A~G~ 239 (450)
T 3bc8_A 167 ----EPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR---LEELAVICANYDIPHVVNNAYGL 239 (450)
T ss_dssp ----EEEEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTT
T ss_pred ----eeEEEEeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecC---HHHHHHHHHHCCCeEEEECCCch
Confidence 4444443211 11122221 112 34566666674 44556555 99999999999999999999995
Q ss_pred cccC-CC-CCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHH
Q 045431 250 YISD-DN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGL 327 (433)
Q Consensus 250 ~~~~-~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~ 327 (433)
.... .. +.+..+..+. | .++.|.+|++. .....+++..++... ...+..... ...++.++.....
T Consensus 240 ~~~~~~~l~~~a~~~~~A-D--~~v~S~HK~l~-a~~~~~~l~~rd~~~-------~~~~~~~~~--g~~s~SpsL~l~~ 306 (450)
T 3bc8_A 240 QSSKCMHLIQQGARVGRI-D--AFVQSLDKNFM-VPVGGAIIAGFNEPF-------IQDISKMYP--GRASASPSLDVLI 306 (450)
T ss_dssp TCHHHHHHHHHHHHHSCC-C--EEEEEHHHHHS-CCSSCEEEEESCHHH-------HHHHHHHSC--SCBCSHHHHHHHH
T ss_pred hhhhhHhHHHHHhcccCC-C--EEEECCccCCC-chhccEEEEecCHHH-------HHHHHHHhh--cCCcccHHHHHHH
Confidence 3221 10 1111111221 2 66789999985 555567776643321 122222110 1122344444333
Q ss_pred HhcCcCChhHHHHHHHHHHHHHHHHHHHHhh----cCCeeecCCC-ccEEEEECC------CCChHHHHHHHHHc--CCe
Q 045431 328 ACLSPEGFKAVHEVIGFYKENTDIIVETFNS----LGFKVYGGKN-APYVWVQFP------GRSSWDVFSEILEK--THV 394 (433)
Q Consensus 328 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~g~~~~~~~~-g~~~~~~~~------~~~~~~~~~~l~~~--~gi 394 (433)
.++. .+.+.+.+..++..+..+.+.+.+++ +|..+..... +.-..+.+. ..+...+.-.+... .|.
T Consensus 307 ~l~~-~G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~D~tkl~i~~~~~g~sG~ 385 (450)
T 3bc8_A 307 TLLS-LGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGA 385 (450)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSC
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceeecccccccccCCCceeEEEecCCCCccc
Confidence 3332 24344555555555566666666644 3666554221 112223232 12333444443332 233
Q ss_pred EecC--------CCC---CC----CCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 395 VTTP--------GSG---FG----PGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 395 ~v~~--------g~~---f~----~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
.+.+ |.. |+ ..+..++=+. ++.+++++++++++|++++
T Consensus 386 ~v~~~~~~~~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~ 440 (450)
T 3bc8_A 386 RAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCL 440 (450)
T ss_dssp EEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred eeeecccccchhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 3331 111 11 1223455444 3568999999999998864
|
| >4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.29 E-value=7.2e-08 Score=76.96 Aligned_cols=47 Identities=13% Similarity=0.003 Sum_probs=38.8
Q ss_pred ccccccccccccccccCCChhhHHHHHhccccccc---cccCC-CCCCcHH
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGN---LGKLQ-AGYLFPE 48 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~---~~~l~-~g~~~~~ 48 (433)
++++++|.+|.|+||++|||+|+||+.|+|||+|+ +..|. .|++...
T Consensus 21 ~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~ 71 (134)
T 4ham_A 21 QKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITV 71 (134)
T ss_dssp HHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEE
Confidence 47889999999999999999999999999999996 43443 3665543
|
| >2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A | Back alignment and structure |
|---|
Probab=98.13 E-value=1.9e-07 Score=73.63 Aligned_cols=36 Identities=6% Similarity=-0.096 Sum_probs=33.4
Q ss_pred ccccccccccccccccCCChhhHHHHHhcccccccc
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNL 37 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~ 37 (433)
++++..|.+|.++||++|||+|+||+.++||++|+-
T Consensus 11 ~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr 46 (129)
T 2ek5_A 11 SLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATAR 46 (129)
T ss_dssp HHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHH
Confidence 467889999999999999999999999999999964
|
| >3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.4e-07 Score=74.24 Aligned_cols=36 Identities=11% Similarity=-0.082 Sum_probs=32.4
Q ss_pred ccccccccccccccccCCChhhHHHHHhcccccccc
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNL 37 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~ 37 (433)
++++..|.+|.++||++|||+|+||+.++||++|+-
T Consensus 18 ~~l~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr 53 (126)
T 3ic7_A 18 DRICDDILLGQYEEEGRIPSVREYASIVEVNANTVM 53 (126)
T ss_dssp HHHHHHHHTTSSCBTSEECCTTTTTTCC-CCSGGGH
T ss_pred HHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHH
Confidence 467889999999999999999999999999999964
|
| >3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua} | Back alignment and structure |
|---|
Probab=98.00 E-value=8.5e-07 Score=69.65 Aligned_cols=37 Identities=14% Similarity=-0.137 Sum_probs=33.8
Q ss_pred ccccccccccccccccCCChhhHHHHHhccccccccc
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLG 38 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~ 38 (433)
++++..|.+|.++||++|||+|+||+.++||++|+-.
T Consensus 20 ~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~ 56 (125)
T 3neu_A 20 DWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSR 56 (125)
T ss_dssp HHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHH
Confidence 4678899999999999999999999999999999643
|
| >3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.97 E-value=7.7e-07 Score=68.58 Aligned_cols=37 Identities=11% Similarity=-0.072 Sum_probs=33.7
Q ss_pred ccccccccccccccccCCChhhHHHHHhccccccccc
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLG 38 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~ 38 (433)
++++..|.+|.++||++|||+|+||+.++||++|+-.
T Consensus 16 ~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~ 52 (113)
T 3tqn_A 16 DKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSK 52 (113)
T ss_dssp HHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHH
Confidence 4678899999999999999999999999999999643
|
| >3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni} | Back alignment and structure |
|---|
Probab=97.88 E-value=1.5e-06 Score=68.18 Aligned_cols=37 Identities=11% Similarity=0.018 Sum_probs=33.7
Q ss_pred ccccccccccccccccCCChhhHHHHHhccccccccc
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLG 38 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~ 38 (433)
++++..|.+|.++||++|||+|+||+.++||++|+-.
T Consensus 18 ~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~ 54 (126)
T 3by6_A 18 DRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAK 54 (126)
T ss_dssp HHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHH
Confidence 3678899999999999999999999999999999643
|
| >1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A | Back alignment and structure |
|---|
Probab=97.76 E-value=4e-06 Score=74.12 Aligned_cols=37 Identities=11% Similarity=-0.048 Sum_probs=33.8
Q ss_pred ccccccccccccccccCCChhhHHHHHhccccccccc
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLG 38 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~ 38 (433)
++|++.|.+|.++||++|||+++||+++||||+|+-.
T Consensus 14 ~~l~~~I~~g~l~pG~~LPsE~eLa~~~gVSR~tVRe 50 (239)
T 1hw1_A 14 EYIIESIWNNRFPPGTILPAERELSELIGVTRTTLRE 50 (239)
T ss_dssp HHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHH
Confidence 4688999999999999999999999999999999643
|
| >1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6 | Back alignment and structure |
|---|
Probab=97.72 E-value=1e-05 Score=61.01 Aligned_cols=45 Identities=16% Similarity=0.094 Sum_probs=38.1
Q ss_pred cccccccccccccccCCChhhHHHHHhccccccc---cccCCC-CCCcH
Q 045431 3 NAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGN---LGKLQA-GYLFP 47 (433)
Q Consensus 3 ~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~---~~~l~~-g~~~~ 47 (433)
.++..|.+|.+++|++|||+++||+.++||++|+ +..|.. |++..
T Consensus 19 ~i~~~I~~~~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~ 67 (102)
T 1v4r_A 19 HFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSS 67 (102)
T ss_dssp HHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEE
T ss_pred HHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 5788999999999999999999999999999996 445543 77654
|
| >2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.69 E-value=5.4e-06 Score=73.23 Aligned_cols=37 Identities=14% Similarity=-0.031 Sum_probs=33.9
Q ss_pred ccccccccccccccccCCChhhHHHHHhccccccccc
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLG 38 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~ 38 (433)
++++++|.+|+++||++|||+|+||+++||||+|+-.
T Consensus 11 ~~L~~~I~~g~l~pG~~LpsE~~La~~lgVSRtpVRE 47 (239)
T 2di3_A 11 DWVTEELRSGRLKIGDHLPSERALSETLGVSRSSLRE 47 (239)
T ss_dssp HHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHhCCCCCCCcCCCHHHHHHHHCCCHHHHHH
Confidence 4688999999999999999999999999999999643
|
| >2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2 | Back alignment and structure |
|---|
Probab=97.68 E-value=2.8e-06 Score=75.34 Aligned_cols=47 Identities=17% Similarity=0.062 Sum_probs=3.4
Q ss_pred ccccccccccccccccCCChhhHHHHHhcccccccccc---CC-CCCCcHH
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLGK---LQ-AGYLFPE 48 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~~---l~-~g~~~~~ 48 (433)
+++++.|.+|.+++|++|||+|+||++++|||+|+-+. |. +|++...
T Consensus 23 ~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~ 73 (247)
T 2ra5_A 23 QQLEAAIEHGALTPGSLLGNEIELAARLGLSRPTVRQAIQSLVDKGLLVRR 73 (247)
T ss_dssp ---------------------------------------------CEEEEE
T ss_pred HHHHHHHHhCCCCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 56889999999999999999999999999999997543 43 3666543
|
| >3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua} | Back alignment and structure |
|---|
Probab=97.58 E-value=9.8e-06 Score=71.21 Aligned_cols=38 Identities=13% Similarity=-0.038 Sum_probs=32.5
Q ss_pred ccccccccccccccccCCChhhHHHHHhcccccccccc
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLGK 39 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~~ 39 (433)
+++++.|.+|.+++|++|||+|+||++++|||+|+-+.
T Consensus 16 ~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~A 53 (236)
T 3edp_A 16 SKIKDSINRDEYKTGMLMPNETALQEIYSSSRTTIRRA 53 (236)
T ss_dssp HHHHHHHHTTSSCCCC--CCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHH
Confidence 46889999999999999999999999999999996543
|
| >2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.46 E-value=1.8e-05 Score=69.87 Aligned_cols=37 Identities=19% Similarity=0.062 Sum_probs=33.8
Q ss_pred ccccccccccccccccCCChhhHHHHHhccccccccc
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLG 38 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~ 38 (433)
+++++.|.+|.+++|++|||+|+||++++|||+|+-+
T Consensus 17 ~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~ 53 (243)
T 2wv0_A 17 EQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQ 53 (243)
T ss_dssp HHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHH
Confidence 4678899999999999999999999999999999644
|
| >3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=97.44 E-value=1.9e-05 Score=70.86 Aligned_cols=47 Identities=17% Similarity=0.077 Sum_probs=38.8
Q ss_pred ccccccccccccccccCCChhhHHHHHhcccccccccc---CC-CCCCcHH
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLGK---LQ-AGYLFPE 48 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~~---l~-~g~~~~~ 48 (433)
+.++++|.+|.+++|++|||+|+||++++|||+|+-+. |. +|++...
T Consensus 36 ~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~ 86 (272)
T 3eet_A 36 GDLRKKIVDGSLPPHTRLPSQARIREEYGVSDTVALEARKVLMAEGLVEGR 86 (272)
T ss_dssp HHHHHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHcCCCCCcCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 46789999999999999999999999999999997443 32 3666554
|
| >3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2 | Back alignment and structure |
|---|
Probab=97.40 E-value=2.3e-05 Score=68.98 Aligned_cols=37 Identities=11% Similarity=-0.019 Sum_probs=33.7
Q ss_pred ccccccccccccccccCCChhhHHHHHhccccccccc
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLG 38 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~ 38 (433)
+.+++.|.+|.+++|++|||+|+||++++|||+|+-+
T Consensus 12 ~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~ 48 (239)
T 3bwg_A 12 TEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITK 48 (239)
T ss_dssp HHHHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCCcCHHHHHHHHCCCHHHHHH
Confidence 4578899999999999999999999999999999644
|
| >3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=97.24 E-value=3.6e-05 Score=67.02 Aligned_cols=35 Identities=11% Similarity=-0.078 Sum_probs=32.5
Q ss_pred ccccccccccccccccCCChhhHHHHHhcccccccc
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNL 37 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~ 37 (433)
++|+++|.+|+++||++|| +++||++|||||+|+-
T Consensus 23 ~~l~~~I~~g~l~pG~~L~-E~~La~~lgVSRtpVR 57 (222)
T 3ihu_A 23 FGIMSGLELGTFVPGQRLV-ETDLVAHFGVGRNSVR 57 (222)
T ss_dssp HHHHHHHHHTSSCTTCEEC-HHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHhCCCCCCCccC-HHHHHHHHCCCHHHHH
Confidence 4688999999999999999 9999999999999953
|
| >3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=97.10 E-value=7.3e-05 Score=66.14 Aligned_cols=44 Identities=18% Similarity=0.018 Sum_probs=35.7
Q ss_pred ccccccccccccccccCCChhhHHHHHhccccccccc---cCC-CCCCcH
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLG---KLQ-AGYLFP 47 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~---~l~-~g~~~~ 47 (433)
+.+++.|. | +++|++|||+|+||++++|||+|+-+ .|. +|++..
T Consensus 21 ~~l~~~I~-~-~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~ 68 (248)
T 3f8m_A 21 AELDRMLD-G-MRIGDPFPAEREIAEQFEVARETVRQALRELLIDGRVER 68 (248)
T ss_dssp HHHHHHHH-H-CCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHh-C-CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 45788898 8 99999999999999999999999643 332 366654
|
| >2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66 | Back alignment and structure |
|---|
Probab=97.06 E-value=6.6e-05 Score=56.24 Aligned_cols=33 Identities=12% Similarity=-0.047 Sum_probs=30.7
Q ss_pred cccccccccccccCCChhhHHHHHhccccccccc
Q 045431 5 WVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLG 38 (433)
Q Consensus 5 ~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~ 38 (433)
+.+|. |.+++|++|||+++||+.++||++|+..
T Consensus 30 ~~~I~-~~l~~g~~lps~~eLa~~lgVSr~tVr~ 62 (102)
T 2b0l_A 30 IEHIF-EELDGNEGLLVASKIADRVGITRSVIVN 62 (102)
T ss_dssp HHHHT-TSSBTTEEEECHHHHHHHHTCCHHHHHH
T ss_pred HHHHH-hhhcCCCcCCCHHHHHHHHCcCHHHHHH
Confidence 88899 9999999999999999999999999644
|
| >3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=9.9e-05 Score=64.04 Aligned_cols=35 Identities=6% Similarity=-0.226 Sum_probs=32.3
Q ss_pred ccccccccccccccccCCChhhHHHHHhcccccccc
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNL 37 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~ 37 (433)
++++++|.+|.++||++| |+++||+++||||+|+-
T Consensus 19 ~~l~~~I~~g~l~pG~~L-~e~~La~~lgVSRtpVR 53 (218)
T 3sxy_A 19 NLLKEMILNHELKLGEKL-NVRELSEKLGISFTPVR 53 (218)
T ss_dssp HHHHHHHHTTSSCTTCEE-CHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHhCCCCCCCEe-CHHHHHHHHCCCHHHHH
Confidence 468899999999999999 89999999999999963
|
| >2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00018 Score=63.29 Aligned_cols=35 Identities=17% Similarity=-0.081 Sum_probs=32.2
Q ss_pred ccccccccccccccccCCChhhHHHHHhcccccccc
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNL 37 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~ 37 (433)
++|++.|.+|+++||++| ++++||++|||||+|+-
T Consensus 35 ~~l~~~I~~g~l~pG~~L-~e~~La~~lgVSRtpVR 69 (239)
T 2hs5_A 35 GILRDAIIDGTFRPGARL-SEPDICAALDVSRNTVR 69 (239)
T ss_dssp HHHHHHHHHTSSCTTCEE-CHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHcCCCCCcCEe-CHHHHHHHHCCCHHHHH
Confidence 468899999999999999 79999999999999963
|
| >3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.00054 Score=60.08 Aligned_cols=35 Identities=17% Similarity=-0.036 Sum_probs=32.3
Q ss_pred ccccccccccccccccCCChhhHHHHHhcccccccc
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNL 37 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~ 37 (433)
++|+..|.+|.|+||++| ++++||++||||++|+-
T Consensus 33 ~~L~~~I~~g~l~pG~~L-~e~~La~~lgVSr~~VR 67 (237)
T 3c7j_A 33 EKLRNAIIDGSLPSGTAL-RQQELATLFGVSRMPVR 67 (237)
T ss_dssp HHHHHHHHTSSSCTTCBC-CHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHhCCCCCcCee-CHHHHHHHHCCCHHHHH
Confidence 468899999999999999 79999999999999964
|
| >3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=93.25 E-value=0.05 Score=50.50 Aligned_cols=33 Identities=18% Similarity=-0.090 Sum_probs=0.0
Q ss_pred ccccccccccCCChhhHHHHHhccccccccccC
Q 045431 8 AKRISVCKCVAAPQEEKIAYKTKVSRNGNLGKL 40 (433)
Q Consensus 8 ~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~~l 40 (433)
++.|.+++|+|+|+++++|+..|||++|+-..|
T Consensus 1 ~~~g~~~~g~~~~ti~diA~~agVS~~TVSr~L 33 (355)
T 3e3m_A 1 MSLDSRKPGHRPVTMRDVAKAAGVSRMTVSRAL 33 (355)
T ss_dssp ---------------------------------
T ss_pred CCCcCcCCCCCCCcHHHHHHHhCCCHHHHHHHH
Confidence 467999999999999999999999999976555
|
| >2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A | Back alignment and structure |
|---|
Probab=89.06 E-value=0.054 Score=44.14 Aligned_cols=37 Identities=8% Similarity=-0.016 Sum_probs=31.3
Q ss_pred ccccccccccccccccCCChhhHHHHHhccccccccccC
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLGKL 40 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~~l 40 (433)
+.++.+|-+ .|++|.+| |.++||+.+|||++|+...+
T Consensus 12 d~l~~~Il~-~l~~~~~l-s~~eLa~~lgvSr~~vr~al 48 (163)
T 2gqq_A 12 DRIDRNILN-ELQKDGRI-SNVELSKRVGLSPTPCLERV 48 (163)
T ss_dssp CSHHHHHHH-HHHHCSSC-CTTGGGTSSSCCTTTSSSTH
T ss_pred hHHHHHHHH-HHHhCCCC-CHHHHHHHHCcCHHHHHHHH
Confidence 356677888 99999999 79999999999999976543
|
| >3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=87.82 E-value=1.3 Score=40.44 Aligned_cols=39 Identities=13% Similarity=0.015 Sum_probs=25.2
Q ss_pred ccccCCChhhHHHHHhccccccccccCC-CCCCcHHHHHH
Q 045431 14 CKCVAAPQEEKIAYKTKVSRNGNLGKLQ-AGYLFPEIARR 52 (433)
Q Consensus 14 ~~g~~LPs~r~la~~~~vs~~t~~~~l~-~g~~~~~~~~~ 52 (433)
++++|.|+++++|+..|||++|+-..|. .+.+..+..++
T Consensus 5 ~~~~~~~ti~diA~~agVS~~TVSr~Ln~~~~vs~~tr~r 44 (344)
T 3kjx_A 5 ADTKRPLTLRDVSEASGVSEMTVSRVLRNRGDVSDATRAR 44 (344)
T ss_dssp -----CCCHHHHHHHHCCCSHHHHHHHTTCSCCCHHHHHH
T ss_pred ccCCCCCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHH
Confidence 5788999999999999999999765543 24555554433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 433 | ||||
| d1j32a_ | 388 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho | 2e-56 | |
| d1gdea_ | 388 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 6e-56 | |
| d1b5pa_ | 382 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 1e-52 | |
| d1xi9a_ | 395 | c.67.1.1 (A:) Putative alanine aminotransferase {P | 3e-39 | |
| d1o4sa_ | 375 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 3e-34 | |
| d1w7la_ | 418 | c.67.1.1 (A:) Kynurenine--oxoglutarate transaminas | 2e-32 | |
| d1v2da_ | 368 | c.67.1.1 (A:) Glutamine aminotransferase {Thermus | 1e-31 | |
| d2hoxa1 | 425 | c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativ | 3e-29 | |
| d1wsta1 | 403 | c.67.1.1 (A:13-415) Multiple substrate aminotransf | 1e-28 | |
| d1bw0a_ | 412 | c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Try | 1e-27 | |
| d2r5ea1 | 418 | c.67.1.1 (A:12-429) Kynurenine--oxoglutarate trans | 2e-27 | |
| d1u08a_ | 382 | c.67.1.1 (A:) Putative methionine aminotransferase | 1e-26 | |
| d2q7wa1 | 396 | c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT | 2e-25 | |
| d1ajsa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig | 5e-25 | |
| d1m7ya_ | 431 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 3e-24 | |
| d1iaya_ | 428 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 6e-24 | |
| d7aata_ | 401 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chi | 8e-24 | |
| d1c7na_ | 394 | c.67.1.3 (A:) Cystalysin {Treponema denticola [Tax | 2e-23 | |
| d3tata_ | 397 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 3e-23 | |
| d2gb3a1 | 389 | c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotog | 3e-23 | |
| d1yaaa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Bak | 1e-22 | |
| d2ay1a_ | 394 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 3e-22 | |
| d1d2fa_ | 361 | c.67.1.3 (A:) Modulator in mal gene expression, Ma | 3e-21 | |
| d1vp4a_ | 420 | c.67.1.1 (A:) Putative aminotransferase TM1131 {Th | 3e-19 | |
| d1lc5a_ | 355 | c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxyl | 7e-11 | |
| d1fg7a_ | 354 | c.67.1.1 (A:) Histidinol-phosphate aminotransferas | 2e-10 | |
| d2f8ja1 | 334 | c.67.1.1 (A:1-334) Histidinol-phosphate aminotrans | 1e-07 | |
| d1svva_ | 340 | c.67.1.1 (A:) Low-specificity threonine aldolase { | 4e-04 |
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Score = 188 bits (479), Expect = 2e-56
Identities = 91/399 (22%), Positives = 155/399 (38%), Gaps = 43/399 (10%)
Query: 44 YLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA 103
+ I + A +K +V S G+ P+ I A ++G + YG
Sbjct: 13 SMTLIIDAKAKA--MKAEGIDVCSFSAGEPDFNTPKHIVEAAKAA-----LEQGKTRYGP 65
Query: 104 EQGEKPLRAAIASTFYKD--LGIEEGDIFVSDGAKCDISRL-QIVFGSNVTMAVQDPSYP 160
GE LR AIA +D L +I V++G K I L + + + P +
Sbjct: 66 AAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWV 125
Query: 161 AYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA-----RTDIIFFCSPN 215
+Y + + G + T E F + +T ++ F +P+
Sbjct: 126 SYPEMVKLA------------EGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPS 173
Query: 216 NPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNP-RSIFEI-PGAKEVAIETS 273
NPTG T +++ + Q A + G ++ D Y + DD SI P A E ++ S
Sbjct: 174 NPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCS 233
Query: 274 SFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPE 333
F+K TG R+G+ P L+ K +I + +Q G
Sbjct: 234 GFAKTYAMTGWRVGFLAGPVPLV--------KAATKIQGHSTSNVCTFAQYGA-IAAYEN 284
Query: 334 GFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAPYVWVQFP--GRSSWDVFSEILE 390
V E++ + E +++ N++ G + A Y++ GRSS D SE+L+
Sbjct: 285 SQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIAKTGRSSLDFCSELLD 344
Query: 391 KTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFK 429
+ V T PG+ F G + IR+S + +R +
Sbjct: 345 QHQVATVPGAAF--GADDCIRLSYATDLDTIKRGMERLE 381
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 187 bits (476), Expect = 6e-56
Identities = 95/382 (24%), Positives = 153/382 (40%), Gaps = 36/382 (9%)
Query: 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLG 123
+VISLGIG+ P+ I + +G + YG G LR AIA K G
Sbjct: 26 DVISLGIGEPDFDTPQHIKEYAKEA-----LDKGLTHYGPNIGLLELREAIAEKLKKQNG 80
Query: 124 I---EEGDIFVSDGAKCDISRLQIVF-GSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDA 179
I + +I V GA F + + P++ +Y + ++ G
Sbjct: 81 IEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAG--------- 131
Query: 180 EKYGKIEYMRCTAENGFFPDLSTVA-----RTDIIFFCSPNNPTGAAATREQLTRLVQFA 234
GK + E+ F ++ + +T + SP NPTGA T++ L + F
Sbjct: 132 ---GKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFV 188
Query: 235 KDNGSIIVYDSAYALYISDDNPR-SIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPK 293
++ I++ D Y +I DD SI + G E I + FSK TG RLG+ P
Sbjct: 189 VEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPS 248
Query: 294 ELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIV 353
+ + + + + I A A +KAV E+ Y ++
Sbjct: 249 -------WIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVW 301
Query: 354 ETFNSLGFKVYGGKNAPYVWVQFP--GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIR 411
+ N +G K A Y++ + G +S +L++ V PGS FG GEG++R
Sbjct: 302 KRLNEMGLPTVKPKGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVR 361
Query: 412 VSAFGHRGNVLEACKRFKHLYK 433
+S + EA R + + K
Sbjct: 362 ISYATAYEKLEEAMDRMERVLK 383
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Score = 178 bits (453), Expect = 1e-52
Identities = 82/399 (20%), Positives = 142/399 (35%), Gaps = 42/399 (10%)
Query: 44 YLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA 103
+ + L+ ++++L G+ PE + A + +G + Y
Sbjct: 14 SATVAVNAKALE--LRRQGVDLVALTAGEPDFDTPEHVKEAARRA-----LAQGKTKYAP 66
Query: 104 EQGEKPLRAAIASTFYKD--LGIEEGDIFVSDGAKCDIS-RLQIVFGSNVTMAVQDPSYP 160
G LR A+A F ++ L + + V+ G + Q + + V P +
Sbjct: 67 PAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWV 126
Query: 161 AYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA-----RTDIIFFCSPN 215
+Y + G + + E GF PD V RT + SPN
Sbjct: 127 SYPEMVRFA------------GGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPN 174
Query: 216 NPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSF 275
NPTGA +E L L + A ++ +V D Y + + S + A E + +
Sbjct: 175 NPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRV--APEHTLTVNGA 232
Query: 276 SKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRI--VCTCFNGASNISQAGGLACLSPE 333
+K TG R+G+ PKE++ K + T
Sbjct: 233 AKAFAMTGWRIGYACGPKEVI--------KAMASVSRQSTTSPDTIAQWATLEALTNQEA 284
Query: 334 GFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSWDV-FSEILEKT 392
V Y+ D+++E +LG K A YV + + +V +E L +
Sbjct: 285 SRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGAFYVLMDTSPIAPDEVRAAERLLEA 344
Query: 393 HVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHL 431
V PG+ F G +R+S N+ +A +RF +
Sbjct: 345 GVAVVPGTDF--AAFGHVRLSYATSEENLRKALERFARV 381
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} Length = 395 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Score = 143 bits (361), Expect = 3e-39
Identities = 85/393 (21%), Positives = 138/393 (35%), Gaps = 31/393 (7%)
Query: 53 KAAHMLKYPDAEVISLGIGDTTE---PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKP 109
A L+ +VI L IGD + PE + A K +EG++ YG +G
Sbjct: 20 LPARELEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCKA-----IKEGHNYYGDSEGLPE 74
Query: 110 LRAAIASTFYKDLGIEEGD-----IFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVD 164
LR AI + G++ A I + G + V PSYP Y
Sbjct: 75 LRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEI--LVPGPSYPPYTG 132
Query: 165 SSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATR 224
G + E+ + + RT I +PNNPTGA +
Sbjct: 133 LVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITD-------RTKAIAVINPNNPTGALYDK 185
Query: 225 EQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGV 284
+ L ++ A + ++ D Y L + S + V I + SK TG
Sbjct: 186 KTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPV-IVMNGLSKVYFATGW 244
Query: 285 RLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGF 344
RLG+ + ++ + + +Q +A L+ + E +
Sbjct: 245 RLGYMYFVD---PENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLT-GPMDYLKEYMKK 300
Query: 345 YKENTDIIVETFNSLG-FKVYGGKNAPYVWVQFP---GRSSWDVFSEILEKTHVVTTPGS 400
KE D I + N + + A Y++ + ++ + ++L HV+ GS
Sbjct: 301 LKERRDYIYKRLNEIPGISTTKPQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGS 360
Query: 401 GFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433
GFG G G R + EA RF+ K
Sbjct: 361 GFGEYGAGHFRAVFLPPIEILEEAMDRFEKFMK 393
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} Length = 375 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Score = 129 bits (324), Expect = 3e-34
Identities = 75/389 (19%), Positives = 134/389 (34%), Gaps = 32/389 (8%)
Query: 44 YLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA 103
E+ + A L +VI+L G+ P PE + + Q+G Y
Sbjct: 11 SKTMELDAKAKA--LIKKGEDVINLTAGEPDFPTPEPVVEEAVRFL-----QKGEVKYTD 63
Query: 104 EQGEKPLRAAIASTFYKDLGIEEG---DIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYP 160
+G LR IA + + + + + + + + V P +
Sbjct: 64 PRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWV 123
Query: 161 AYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGA 220
+Y+ ++ G T + + +T + SPNNPTG
Sbjct: 124 SYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLV-------GKTKAVLINSPNNPTGV 176
Query: 221 AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAG 280
RE L LV+ AK I+ D Y + D SI ++ + + + FSK
Sbjct: 177 VYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHS 236
Query: 281 FTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHE 340
TG R+G+ + +++ + + + I
Sbjct: 237 MTGWRVGYLISSEKVATAVSKIQSHTTSCINTVAQY------------AALKALEVDNSY 284
Query: 341 VIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGS 400
++ +KE + +VE +G K + A Y++ + G +LE+ V PGS
Sbjct: 285 MVQTFKERKNFVVERLKKMGVKFVEPEGAFYLFFKVRG-DDVKFCERLLEEKKVALVPGS 343
Query: 401 GFGPGGEGFIRVSAFGHRGNVLEACKRFK 429
F GF+R+S + EA R +
Sbjct: 344 AF--LKPGFVRLSFATSIERLTEALDRIE 370
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} Length = 418 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Score = 125 bits (313), Expect = 2e-32
Identities = 69/413 (16%), Positives = 136/413 (32%), Gaps = 43/413 (10%)
Query: 46 FPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQ 105
+ E + + H +V++LG G P P+ A A+S + Y
Sbjct: 15 WVEFVKLASEH-------DVVNLGQGFPDFPPPDFAVEAFQH---AVSGDFMLNQYTKTF 64
Query: 106 GEKPLRAAIASTFYKDLGIE---EGDIFVSDGAKCDISRLQIVFGSNVTMAVQ-DPSYPA 161
G PL +AS F + LG E ++ V+ G + + +P +
Sbjct: 65 GYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDC 124
Query: 162 YVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS-----TVARTDIIFFCSPNN 216
Y +++ G G + K G I+ + + + D +RT + +PNN
Sbjct: 125 YEPMTMMAG--GRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNN 182
Query: 217 PTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNP-RSIFEIPGAKEVAIETSSF 275
P G +RE+L + + + + + D Y + D + SI +PG E + S
Sbjct: 183 PLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSA 242
Query: 276 SKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF 335
K TG ++GW + P + C + A+ L +
Sbjct: 243 GKTFSATGWKVGWVLGPDH--IMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPS 300
Query: 336 KAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPG--------------RSS 381
+ + D ++ + S+G K + + ++
Sbjct: 301 SYFVQFPQAMQRCRDHMIRSLQSVGLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYD 360
Query: 382 WDVFSEILEKTHVVTTPGSGFG-----PGGEGFIRVSAFGHRGNVLEACKRFK 429
+++ +V P S F + +IR + ++ +
Sbjct: 361 RRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLR 413
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 368 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Score = 122 bits (305), Expect = 1e-31
Identities = 70/391 (17%), Positives = 130/391 (33%), Gaps = 39/391 (9%)
Query: 44 YLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA 103
+FP ++ ++LG G + P P + A+ + Y
Sbjct: 13 SIFPRMSGLAQRL-------GAVNLGQGFPSNPPPPFLLEAVRRAL------GRQDQYAP 59
Query: 104 EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQIVFGSNVTMAV-QDPSYPAY 162
G LR A+A F +E + V+ GA + L V +P + Y
Sbjct: 60 PAGLPALREALAEEFA----VEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVY 115
Query: 163 VDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAA 222
+ + + G + E P RT + +P NPTG
Sbjct: 116 LPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTP------RTRALLLNTPMNPTGLVF 169
Query: 223 TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFT 282
+L + + A+ + ++ D Y + PR + E + + ++ A T
Sbjct: 170 GERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEA--T 227
Query: 283 GVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVI 342
G R+GW V PK + + T F+ + + A +
Sbjct: 228 GYRVGWIVGPK-------EFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALR 280
Query: 343 GFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGF 402
Y+ D++ ++G +VY + ++ + PG WD F ++E+ V P S F
Sbjct: 281 EGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELPG---WDAF-RLVEEARVALIPASAF 336
Query: 403 GPG--GEGFIRVSAFGHRGNVLEACKRFKHL 431
+ R + + A +R +
Sbjct: 337 YLEDPPKDLFRFAFCKTEEELHLALERLGRV 367
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Score = 116 bits (291), Expect = 3e-29
Identities = 43/282 (15%), Positives = 75/282 (26%), Gaps = 56/282 (19%)
Query: 182 YGKIEYMRCTAENGFFPDLSTVA-----RTDIIFFCSPNNPTGAAATREQLTRLVQFAKD 236
+ + + + + I SPNNP G ++ A
Sbjct: 168 FREQTKYFDKKGYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGL----------LRHAVI 217
Query: 237 NGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELL 296
G +YD Y I + I + SK+ G +G R GW +I E
Sbjct: 218 KGCKSIYDMVY-------YWPHYTPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDE-- 268
Query: 297 FSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLS----------PEGFKAVHEVIGFYK 346
V + + G +Q L L +
Sbjct: 269 -----SVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLR 323
Query: 347 ENTDIIVETFNSLG---------------FKVYGGKNAPYVWVQFPGRSSWDVFSEILEK 391
E I + F+ + Y WV+ D + + +
Sbjct: 324 ERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCY-QTFQN 382
Query: 392 THVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433
+ T G GF ++R+S + + + K + K
Sbjct: 383 GRINTQNGVGFEA-SSRYVRLSLIKTQDDFDQLMYYLKDMVK 423
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} Length = 403 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Score = 113 bits (284), Expect = 1e-28
Identities = 64/391 (16%), Positives = 119/391 (30%), Gaps = 22/391 (5%)
Query: 52 RKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYS---GYGAEQGEK 108
R+ +++ D VISL G P PE K+ +E YG +G
Sbjct: 20 RELLKLVETSD--VISLAGG---LPAPETFPVETIKKIAVEVLEEHADKALQYGTTKGFT 74
Query: 109 PLRAAIASTFYKDLGIE---EGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDS 165
PLR A+A K I + V+ + ++ + V+ P+Y A + +
Sbjct: 75 PLRLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAIQA 134
Query: 166 SVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATRE 225
+K +++ + + + NP G + +
Sbjct: 135 FKYYDPEFISIPLDDKGMRVDLLEE---KLEELRKQGKRVKIVYTVSTFQNPAGVTMSVD 191
Query: 226 QLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVR 285
+ +L++ A + +IV D Y+ P + I +FSK G R
Sbjct: 192 RRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSKI-LAPGFR 250
Query: 286 LGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFY 345
+GW + I I+ E + E
Sbjct: 251 IGWVAAHPH----LIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPR 306
Query: 346 KENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFG-- 403
++ +E + G + + +V V P + E V PG F
Sbjct: 307 RDAMLEALEEYMPEGVEWTKPEGGMFVRVTLPEGIDTKLMMERAVAKGVAYVPGEAFFVH 366
Query: 404 PGGEGFIRVS-AFGHRGNVLEACKRFKHLYK 433
+ +R++ + + E +R K
Sbjct: 367 RDKKNTMRLNFTYVPEETIREGVRRLAETIK 397
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Score = 111 bits (277), Expect = 1e-27
Identities = 55/401 (13%), Positives = 111/401 (27%), Gaps = 18/401 (4%)
Query: 42 AGYLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGY 101
AG +F I +I L +GD T + ++A K+ + +GY
Sbjct: 9 AGLVFNPIRTVSDNAKPSPSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGY 68
Query: 102 GAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPA 161
G R A+A+ + +E + A+ D A
Sbjct: 69 FPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYA 128
Query: 162 YVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAA 221
V + ++ + N
Sbjct: 129 LVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCG 188
Query: 222 ATREQ---LTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFE---IPGAKEVAIETSSF 275
+ + + + + + + +P + F +
Sbjct: 189 SNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGT 248
Query: 276 SKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF 335
+K G RLGW + P + + V G + QA L
Sbjct: 249 AKNLVVPGWRLGWLLYVDPHG---NGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQ 305
Query: 336 KAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAPYVWVQFP------GRSSWDVFSEI 388
+ + +++ +E+ + G + A Y+ + ++ + F ++
Sbjct: 306 EHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKL 365
Query: 389 LEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFK 429
LE+ +V PG+ F GF R++ EA +R K
Sbjct: 366 LEEENVQVLPGTIF--HAPGFTRLTTTRPVEVYREAVERIK 404
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} Length = 418 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Score = 111 bits (276), Expect = 2e-27
Identities = 64/410 (15%), Positives = 121/410 (29%), Gaps = 35/410 (8%)
Query: 46 FPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQ 105
+ E + A + + ++LG G P+ +ALA A S + Y
Sbjct: 16 WVEYIQLAAQY-------KPLNLGQGFPDYHAPKYALNALAAA--ANSPDPLANQYTRGF 66
Query: 106 GEKPLRAAIASTFYKDLGIE---EGDIFVSDGAK-CDISRLQIVFGSNVTMAVQDPSYPA 161
G L A++ + + + ++ V+ GA + +Q + + +P +
Sbjct: 67 GHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDC 126
Query: 162 YVDSSVIMGQTGEF-QKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGA 220
Y G F K G + + +T +I +P+NP G
Sbjct: 127 YEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGK 186
Query: 221 AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRS-IFEIPGAKEVAIETSSFSKYA 279
R +L + K + V D Y + + I +PG E I S K
Sbjct: 187 VMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTF 246
Query: 280 GFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVH 339
TG ++GW P+ + C + +
Sbjct: 247 SLTGWKIGWAYGPEA--LLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFN 304
Query: 340 EVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPG-------------RSSWDVFS 386
+ G D + +G + ++ + R +
Sbjct: 305 SISGELMAKRDYMASFLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTK 364
Query: 387 EILEKTHVVTTPGSGFGPG-----GEGFIRVSAFGHRGNVLEACKRFKHL 431
+ + + P S F GE F+R F N+ +A + +
Sbjct: 365 WMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQKAAEILRKW 414
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Score = 108 bits (269), Expect = 1e-26
Identities = 70/409 (17%), Positives = 127/409 (31%), Gaps = 41/409 (10%)
Query: 32 SRNGNLGKLQAGYLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYA 91
S+ LG +F +++ H + I+L G P + LA
Sbjct: 6 SKLPQLGT----TIFTQMSALAQQH-------QAINLSQGFPDFDGPRYLQERLAHH--- 51
Query: 92 LSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIE---EGDIFVSDGAKCDISRLQIVFGS 148
+G + Y G + LR AIA + G + + DI V+ GA +
Sbjct: 52 --VAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVR 109
Query: 149 NVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDI 208
N + S + + R + RT +
Sbjct: 110 NGDEVICFDPSY----DSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALL---SERTRL 162
Query: 209 IFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRS-IFEIPGAKE 267
+ +P+NP+ + L Q + ++ D Y + + P +E
Sbjct: 163 VILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRE 222
Query: 268 VAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGL 327
A+ SSF K TG ++G+ R V + N L
Sbjct: 223 RAVAVSSFGKTYHMTGWKVGYC---------VAPAPISAEIRKVHQYLTFSVNTPAQLAL 273
Query: 328 ACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFP---GRSSWDV 384
A + + + FY++ DI+V N ++ + ++ V + +
Sbjct: 274 ADMLRAEPEHYLALPDFYRQKRDILVNALNESRLEILPCEGTYFLLVDYSAVSTLDDVEF 333
Query: 385 FSEILEKTHVVTTPGSGFG--PGGEGFIRVSAFGHRGNVLEACKRFKHL 431
+ ++ V P S F P IR+ +L A +R + L
Sbjct: 334 CQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQL 382
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} Length = 396 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Score = 105 bits (261), Expect = 2e-25
Identities = 54/362 (14%), Positives = 96/362 (26%), Gaps = 34/362 (9%)
Query: 61 PDAEVISLGIG-----DTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIA 115
I+LGIG P+ + A L E Y G
Sbjct: 24 ERPGKINLGIGVYKDETGKTPVLTSVKKAEQY----LLENETTKNYLGIDGIPEFGRCTQ 79
Query: 116 STFYKDLGIEEGD-------IFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVI 168
+ D GA + S + V +PS+P +
Sbjct: 80 ELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNS 139
Query: 169 MGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLT 228
G + A ++F +NPTG T EQ
Sbjct: 140 AGLEVREYAYYDAENHTLDFDALI----NSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQ 195
Query: 229 RLVQFAKDNGSIIVYDSAYALYISDDN--PRSIFEIPGAKEVAIETSSFSKYAGFTGVRL 286
L Q + + G + ++D AY + + + I SS+SK G R+
Sbjct: 196 TLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNERV 255
Query: 287 GWTVIP----KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVI 342
G + + + + A +GAS ++ L + + ++
Sbjct: 256 GACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMR 315
Query: 343 GFYKENTDIIVETFNSLGFKVYGGKNAP----YVWVQFPGRSSWDVFSEILEKTHVVTTP 398
+ + V T G + + G + + + E+ V
Sbjct: 316 QRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFS---GLTK-EQVLRLREEFGVYAVA 371
Query: 399 GS 400
Sbjct: 372 SG 373
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Score = 103 bits (258), Expect = 5e-25
Identities = 50/375 (13%), Positives = 91/375 (24%), Gaps = 40/375 (10%)
Query: 61 PDAEVISLGIG-----DTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIA 115
PD ++LG+G D + V+ + + Y G R +
Sbjct: 28 PDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQR---IANNSSLNHEYLPILGLAEFRTCAS 84
Query: 116 STFYKDLG------------IEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYV 163
D G + GA+ + + V P++ +
Sbjct: 85 RLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHN 144
Query: 164 DSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAAT 223
G K + + + + +NPTG T
Sbjct: 145 GVFTTAGFKDIRSYRYWDTEKRGLDLQGFLS---DLENAPEFSIFVLHACAHNPTGTDPT 201
Query: 224 REQLTRLVQFAKDNGSIIVYDSAYALYISDDNPR---SIFEIPGAKEVAIETSSFSKYAG 280
EQ ++ K +DSAY + S + + +I SFSK G
Sbjct: 202 PEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFG 261
Query: 281 FTGVRLGWTVIP----KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFK 336
R+G + +L GA +++ L E
Sbjct: 262 LYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTG 321
Query: 337 AVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSW-----DVFSEILEK 391
V + + + G S+ ++ +
Sbjct: 322 NVKTMADRILSMRSELRA-----RLEALKTPGTWNHITDQIGMFSFTGLNPKQVEYLINQ 376
Query: 392 THVVTTPGSGFGPGG 406
H+ P G
Sbjct: 377 KHIYLLPSGRINMCG 391
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} Length = 431 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Score = 102 bits (253), Expect = 3e-24
Identities = 57/403 (14%), Positives = 121/403 (30%), Gaps = 37/403 (9%)
Query: 56 HMLKYPDAEVISLGIGD---TTEPIPEVITS---ALAKRSYALSTQEGYSGYGAEQGEKP 109
H + + +I +G+ + + + + A A + S + + G
Sbjct: 30 HEVHNTNG-IIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPA 88
Query: 110 LRAAIASTFYK----DLGIEEGDIFVSDGAKCDISRL-QIVFGSNVTMAVQDPSYPAYVD 164
+ A+ + + + + ++ GA + + + P YP +
Sbjct: 89 FKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDR 148
Query: 165 SSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATR 224
+ E + R + +P+NP G TR
Sbjct: 149 DLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTR 208
Query: 225 EQLTRLVQFAKDNG-SIIVYDSAYALYISDDNPRSIFEIPGAK---------EVAIETSS 274
+L L+ F +D G +I + S + S+ E+ + + S
Sbjct: 209 NELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYS 268
Query: 275 FSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEG 334
SK G G R+G +++ + ++ T ++ +S E
Sbjct: 269 LSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLTKNYIAEN 328
Query: 335 FKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPG-------RSSWDVFSE 387
K + + G G + WV + +++ +
Sbjct: 329 HKRLKQRQKKLVSGLQK-------SGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKK 381
Query: 388 ILEKTHVVTTPGSGFGPGGEGFIRVS-AFGHRGNVLEACKRFK 429
I+ + H+ +PGS G+ RV A + A +R K
Sbjct: 382 IVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLK 424
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} Length = 428 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Score = 101 bits (251), Expect = 6e-24
Identities = 64/401 (15%), Positives = 118/401 (29%), Gaps = 36/401 (8%)
Query: 56 HMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYS------GYGAEQGEKP 109
H LK P+ VI +G+ + ++I + + EG + G
Sbjct: 30 HPLKNPNG-VIQMGLAENQ-LCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPE 87
Query: 110 LRAAIASTFYKDLG----IEEGDIFVSDGAKCDISRL-QIVFGSNVTMAVQDPSYPAYVD 164
R AIA K G + + ++ GA + + V P YPA+
Sbjct: 88 FRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNR 147
Query: 165 SSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATR 224
E + + + + + + +P+NP G +
Sbjct: 148 DLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDK 207
Query: 225 EQLTRLVQFAKDNG-SIIVYDSAYALYISDDNPRSIFEIPGAKEVA-------IETSSFS 276
+ L ++ F + ++ + A SI EI +E+ S S
Sbjct: 208 DTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLS 267
Query: 277 KYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFK 336
K G G R+G + + + ++ T + A+
Sbjct: 268 KDMGLPGFRVGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAM-------LSDEKFVDN 320
Query: 337 AVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPG-------RSSWDVFSEIL 389
+ E + +G K + W+ S ++ I+
Sbjct: 321 FLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVII 380
Query: 390 EKTHVVTTPGSGFGPGGEGFIRVS-AFGHRGNVLEACKRFK 429
+ +PGS F G+ RV A G V A R +
Sbjct: 381 NDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIR 421
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} Length = 401 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Score = 100 bits (249), Expect = 8e-24
Identities = 47/364 (12%), Positives = 100/364 (27%), Gaps = 36/364 (9%)
Query: 61 PDAEVISLGIG-----DTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIA 115
+++ ++LG+G + + + A A ++ ++ Y G A A
Sbjct: 26 TNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAM----IAAKKMDKEYLPIAGLADFTRASA 81
Query: 116 STFYKDLG--IEEGDIFVSDGAKCDISRLQIVF------GSNVTMAVQDPSYPAYVDSSV 167
+ + G G S + + + PS+ +
Sbjct: 82 ELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFR 141
Query: 168 IMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQL 227
G + + + E+ ++ I+ +NPTG +EQ
Sbjct: 142 DAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSI----ILLHACAHNPTGVDPRQEQW 197
Query: 228 TRLVQFAKDNGSIIVYDSAYALYISDDNPR---SIFEIPGAKEVAIETSSFSKYAGFTGV 284
L K + +D AY + S D R ++ + + S++K G G
Sbjct: 198 KELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGE 257
Query: 285 RLGWTVIPKELLFSDGFPVAKDF----NRIVCTCFNGASNISQAGGLACLSPEGFKAVHE 340
R G + ++ NGA S L E V
Sbjct: 258 RAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKG 317
Query: 341 VIGFYKENTDIIVETFNSLG----FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVT 396
+ +V G ++ + + + + + ++ +
Sbjct: 318 MADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGL----KPEQVERLTKEFSIYM 373
Query: 397 TPGS 400
T
Sbjct: 374 TKDG 377
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Score = 99.1 bits (245), Expect = 2e-23
Identities = 58/398 (14%), Positives = 113/398 (28%), Gaps = 25/398 (6%)
Query: 44 YLFPEIARRKAAHMLKY---------PDAEVISLGIGDTTEPIPEVITSALAKRSYALST 94
Y F RK LK+ EV+ L + D P + L K
Sbjct: 3 YDFTTKISRKNLGSLKWDLMYSQNPEVGNEVVPLSVADMEFKNPPELIEGLKKY-----L 57
Query: 95 QEGYSGYGAEQGEKPLRAAIASTFYKDLGIE-EGDIFVSDGAKCDISRLQIVFGSNVTMA 153
E GY E + + + + D ++ + +
Sbjct: 58 DETVLGYTGPTEE--YKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDG 115
Query: 154 VQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCS 213
V + Y I Q +K E + T + LS + FCS
Sbjct: 116 VIIITPVYYPFFMAIKNQ---ERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCS 172
Query: 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETS 273
P+NP G +++L ++ + ++ D + I ++F+ + +
Sbjct: 173 PHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTIT 232
Query: 274 SFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPE 333
+ F +G + I + +R + + +A +
Sbjct: 233 FTAPSKTFNIAGMGMSNIII---KNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECG 289
Query: 334 GFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFP--GRSSWDVFSEILEK 391
+ + + N K + W+ F + ++ K
Sbjct: 290 KWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHK 349
Query: 392 THVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFK 429
+ G FG GG GF R++ + E+ +R
Sbjct: 350 AQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLN 387
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} Length = 397 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Score = 98.9 bits (245), Expect = 3e-23
Identities = 58/367 (15%), Positives = 111/367 (30%), Gaps = 37/367 (10%)
Query: 61 PDAEVISLGIG-----DTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIA 115
P ++ ++L IG D P + + A A+ + G S Y +G R AIA
Sbjct: 24 PRSDKVNLSIGLYYNEDGIIPQLQAVAEAEAR---LNAQPHGASLYLPMEGLNCYRHAIA 80
Query: 116 STFYKDLG--IEEGDIFVSDGAKCDISRLQIVFG-----SNVTMAVQDPSYPAYVDSSVI 168
+ +++ + + + V DP++ +V
Sbjct: 81 PLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAG 140
Query: 169 MGQTGEFQK-DAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQL 227
G E + + A P R+ ++ +NPTGA T +Q
Sbjct: 141 AGFEVSTYPWYDEATNGVRFNDLLATLKTLPA-----RSIVLLHPCCHNPTGADLTNDQW 195
Query: 228 TRLVQFAKDNGSIIVYDSAYALYISDDNPR--SIFEIPGAKEVAIETSSFSKYAGFTGVR 285
+++ K I D AY + + +I I A A+ ++SFSK G R
Sbjct: 196 DAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGER 255
Query: 286 LGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKA----VHEV 341
+G + E + G + + + + + +Q + V E+
Sbjct: 256 VGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEM 315
Query: 342 IGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSW-----DVFSEILEKTHVVT 396
+V+ + + G S+ + E+ V
Sbjct: 316 RTRILAMRQELVK-----VLSTEMPERNFDYLLNQRGMFSYTGLSAAQVDRLREEFGVYL 370
Query: 397 TPGSGFG 403
Sbjct: 371 IASGRMC 377
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} Length = 389 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Score = 98.7 bits (244), Expect = 3e-23
Identities = 64/390 (16%), Positives = 123/390 (31%), Gaps = 35/390 (8%)
Query: 55 AHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAI 114
A M K + L IG PEV + + + Y G LR A
Sbjct: 20 AEMAKKRGVRIHHLNIGQPDLKTPEVFFERIYEN------KPEVVYYSHSAGIWELREAF 73
Query: 115 ASTFYKDLGIEEGD---IFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQ 171
AS + + ++ + + G++ + ++ + V +P Y Y + I G
Sbjct: 74 ASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGV 133
Query: 172 TGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLV 231
+ G + RT I +P NPTG ++++ LV
Sbjct: 134 KLIPVTRRMEEGFAIPQNLESFIN--------ERTKGIVLSNPCNPTGVVYGKDEMRYLV 185
Query: 232 QFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVI 291
+ A+ +G ++ D Y+ + S I + + S SK G R+G +
Sbjct: 186 EIAERHGLFLIVDEVYSEIVFRGEFASALSIE--SDKVVVIDSVSKKFSACGARVGCLIT 243
Query: 292 PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDI 351
E L S +A+ G+ L+ + + + +
Sbjct: 244 RNEELISHAMKLAQGRLAPPLLEQIGSVG--------LLNLDDSFFDFVRETYRERVETV 295
Query: 352 IVETFNSLGFKVYGGKNAPYVWVQFPGRSSWDVFSEIL-----EKTHVVTTPGSGFGPG- 405
+ + + A Y+ + P + + +L + + P GF
Sbjct: 296 LKKLEEHGLKRFTKPSGAFYITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTP 355
Query: 406 --GEGFIRVSAFGHRGNVLEACKRFKHLYK 433
G+ IR++ + + A K
Sbjct: 356 GLGKKEIRIACVLEKDLLSRAIDVLMEGLK 385
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Score = 97.0 bits (240), Expect = 1e-22
Identities = 47/376 (12%), Positives = 98/376 (26%), Gaps = 41/376 (10%)
Query: 61 PDAEVISLGIG-----DTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIA 115
A + LGIG + + + +A + Y G L + A
Sbjct: 27 QRATKVDLGIGAYRDDNGKPWVLPSVKAAEKL---IHNDSSYNHEYLGITGLPSLTSNAA 83
Query: 116 STFYKDLG--IEEGDIFVSDGAK-----CDISRLQIVFGSNVTMAVQDPSYPAYVDSSVI 168
+ ++E + ++ F + + + P++ ++
Sbjct: 84 KIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFEN 143
Query: 169 MGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLT 228
G K + + + +NPTG T EQ
Sbjct: 144 QGLKTATYPYWANETKSLDLNGFLNAIQKAP----EGSIFVLHSCAHNPTGLDPTSEQWV 199
Query: 229 RLVQFAKDNGSIIVYDSAYALYISDDNP------RSIFEIPGAKEVAIETSSFSKYAGFT 282
++V I ++D+AY + + D R E SF+K AG
Sbjct: 200 QIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMY 259
Query: 283 GVRLGWTVIPKELLFSDGFPVAKDF----NRIVCTCFNGASNISQAGGLACLSPEGFKA- 337
G R+G + + I N + ++ +PE +
Sbjct: 260 GERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQW 319
Query: 338 ---VHEVIGFYKENTDIIVETFNSLG----FKVYGGKNAPYVWVQFPGRSSWDVFSEILE 390
+ + + + + LG + + + + + + E
Sbjct: 320 HKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLTP----QMVKRLEE 375
Query: 391 KTHVVTTPGSGFGPGG 406
V G
Sbjct: 376 THAVYLVASGRASIAG 391
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Score = 95.8 bits (237), Expect = 3e-22
Identities = 59/361 (16%), Positives = 102/361 (28%), Gaps = 35/361 (9%)
Query: 61 PDAEVISLGIG-----DTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIA 115
P I LG+G PI + +A + + E Y GE + A+
Sbjct: 24 PRQGKIDLGVGVYKDATGHTPIMRAVHAAEQR----MLETETTKTYAGLSGEPEFQKAMG 79
Query: 116 STFYKD---LGIEEGDIFVSDGAKCDIS-RLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQ 171
D V + L + ++ + V DP++P +V MG
Sbjct: 80 ELILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGL 139
Query: 172 TGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA-RTDIIFFCSPNNPTGAAATREQLTRL 230
+ R G DL+ ++ +NPTGA T +Q +
Sbjct: 140 PVQTY-----RYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEI 194
Query: 231 VQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEV--AIETSSFSKYAGFTGVRL-- 286
+ G++ + D AY + + A + + +S SK G R
Sbjct: 195 ASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGC 254
Query: 287 --GWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGF 344
+ G + F+GA +S L + + V
Sbjct: 255 LLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSG 314
Query: 345 YKENTDIIVETFNSLGFKVYGGKNAPYVWVQ-----FPGRSSWDVFSEILEKTHVVTTPG 399
+ + L G +V G + V I E+ +
Sbjct: 315 MLRLREQLAGELRDLS----GSDRFGFVAEHRGMFSRLGATPEQV-KRIKEEFGIYMVGD 369
Query: 400 S 400
S
Sbjct: 370 S 370
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Score = 92.2 bits (227), Expect = 3e-21
Identities = 52/372 (13%), Positives = 97/372 (26%), Gaps = 19/372 (5%)
Query: 66 ISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLG-- 123
+ I D I AL +R G GY + + AAIA F
Sbjct: 2 LPFTISDMDFATAPCIIEALNQR-----LMHGVFGYSRWKND-EFLAAIAHWFSTQHYTA 55
Query: 124 IEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYG 183
I+ + +S L + V ++ Q EK
Sbjct: 56 IDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQA 115
Query: 184 KIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVY 243
+ I+ CSP NPTG T ++L + + + + V
Sbjct: 116 DGWFCDMGKLEAVL----AKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERH-GVRVI 170
Query: 244 DSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPV 303
+ + I A+ +S SK + + +I
Sbjct: 171 SDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDA---- 226
Query: 304 AKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKV 363
+ + + A A + +
Sbjct: 227 YLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNW 286
Query: 364 YGGKNAPYVWVQFP--GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNV 421
++ W+ + ++E+ V PG +G G GF+R++A R +
Sbjct: 287 QIPQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKL 346
Query: 422 LEACKRFKHLYK 433
+ + +
Sbjct: 347 EKGVAGLINAIR 358
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} Length = 420 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Score = 87.1 bits (214), Expect = 3e-19
Identities = 64/418 (15%), Positives = 126/418 (30%), Gaps = 27/418 (6%)
Query: 24 KIAYKTKVSRNGNLGKLQAGYLFPEIARRKAAHMLKY-PDAEVISLGIG--DTTEPIPEV 80
+ + K+S+ G + I R +LK+ D + IS G G D +
Sbjct: 9 VVNLEGKISKIGQ-------NMKSSIIRE----ILKFAADKDAISFGGGVPDPETFPRKE 57
Query: 81 ITSALAKRSYALSTQEGYS-GYGAEQGEKPLRAAIASTFYKDLGIE---EGDIFVSDGAK 136
+ + + + Y+ Y +G+ L+ I + GI E ++ + G++
Sbjct: 58 LAEIAKE---IIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQ 114
Query: 137 CDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGF 196
+ + +F + + V D ++ E G + + F
Sbjct: 115 QALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLEDDGMDLNVLERKLSEF 174
Query: 197 FPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNP 256
+ I + +NP G + E+ LV+ A+ IV D Y +
Sbjct: 175 DKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGET 234
Query: 257 RSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFN 316
G E + + G+R+G KE +
Sbjct: 235 VDPIFKIGGPER-VVLLNTFSKVLAPGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHR 293
Query: 317 GASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQF 376
A+ + L + + + G K + ++W+
Sbjct: 294 LAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYF--SDIPGVKWVKSEGGLFIWLTL 351
Query: 377 PGRSSWDVFSEILEKTHVVTTPGSGFGPGGE--GFIRVS-AFGHRGNVLEACKRFKHL 431
P E ++ V PG F E +R+S ++E KR + +
Sbjct: 352 PEGFDTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREV 409
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} Length = 355 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Score = 60.9 bits (146), Expect = 7e-11
Identities = 51/379 (13%), Positives = 101/379 (26%), Gaps = 37/379 (9%)
Query: 52 RKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLR 111
R+ A +L +++ +P + AL L E Y L
Sbjct: 11 REPATVLGISPDQLLDFSANINPLGMPVSVKRALID---NLDCIERYPDADYFH----LH 63
Query: 112 AAIASTFYKDLGIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQ 171
A+A + + I +G I + M + P + Y + G
Sbjct: 64 QALA----RHHQVPASWILAGNGETESIFTVASGLKPRRAM-IVTPGFAEYGRALAQSGC 118
Query: 172 TGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLV 231
E G D +F C+PNNPTG R L +
Sbjct: 119 EIRRWSLREADGWQLTDAILEALT--------PDLDCLFLCTPNNPTGLLPERPLLQAIA 170
Query: 232 QFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVI 291
K ++ D A+ +I + + + + + + V
Sbjct: 171 DRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLG--YLVN 228
Query: 292 PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDI 351
+ S + A ++ + + +E
Sbjct: 229 SD-----------DAAMARMRRQQMPWSVNALAALAGEVALQDSAWQQATWHWLREEGAR 277
Query: 352 IVETFNSLGFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIR 411
+ L A Y+ ++ R D+ +L + ++ + + + R
Sbjct: 278 FYQALCQLPLLTVYPGRANYLLLRCE-REDIDLQRRLLTQ-RILIRSCANYPGLDSRYYR 335
Query: 412 VSAFGHRGN--VLEACKRF 428
V+ N +L A +
Sbjct: 336 VAIRSAAQNERLLAALRNV 354
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} Length = 354 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Score = 59.4 bits (142), Expect = 2e-10
Identities = 49/326 (15%), Positives = 100/326 (30%), Gaps = 36/326 (11%)
Query: 104 EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYV 163
E K + A G++ + VS GA + A +P A +
Sbjct: 55 ECQPKAVIENYAQYA----GVKPEQVLVSRGADE--------GIELLIRAFCEPGKDAIL 102
Query: 164 DSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAAT 223
G + + + + +++ CSPNNPTG
Sbjct: 103 YCPPTYGMYSVSAETIGVECRTVPTLDNWQLDLQGISDKLDGVKVVYVCSPNNPTGQLIN 162
Query: 224 REQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTG 283
+ L++ + ++ ++ + E P + + SK G
Sbjct: 163 PQDFRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLAIL----RTLSKAFALAG 218
Query: 284 VRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIG 343
+R G+T+ +E + S LSP+G A+ E +
Sbjct: 219 LRCGFTLANEE----------VINLLMKVIAPYPLSTPVADIAAQALSPQGIVAMRERVA 268
Query: 344 FYKENTDIIVETFNSLGF-KVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGF 402
+ ++ + + Y+ +F +S VF + ++ ++ +
Sbjct: 269 QIIAEREYLIAALKEIPCVEQVFDSETNYILARFK--ASSAVFKSLWDQ-GIILRDQNKQ 325
Query: 403 GPGGEGFIRVSAFGHRGNVLEACKRF 428
P G +R++ G R E +R
Sbjct: 326 -PSLSGCLRIT-VGTR----EESQRV 345
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Score = 50.9 bits (120), Expect = 1e-07
Identities = 53/384 (13%), Positives = 114/384 (29%), Gaps = 54/384 (14%)
Query: 47 PEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQG 106
P K A+ + + L + + P PE + + +R +
Sbjct: 3 PLDLIAKRAYPYETEKRDKTYLALNENPFPFPEDLVDEVFRRL-----NSDALRIYYDSP 57
Query: 107 EKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSS 166
++ L I S +S+ + G+ D S
Sbjct: 58 DEELIEKILSYLD----------------TDFLSKNNVSVGNGADEI--IYVMMLMFDRS 99
Query: 167 VIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQ 226
V T + K +++ V D++F +PNNPTG RE+
Sbjct: 100 VFFPPTYSCYRIFAKAVGAKFLEVPLTKDLRIPEVNVGEGDVVFIPNPNNPTGHVFEREE 159
Query: 227 LTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRL 286
+ R+++ + + ++ Y + + S + E +FSK R+
Sbjct: 160 IERILKTGAF---VALDEAYY-----EFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRV 211
Query: 287 GWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYK 346
G+ V ++ + + V F ++ + + E F
Sbjct: 212 GYVVASEKFIDAYNRVRLPFNVSYVSQMFA------------KVALDHREIFEERTKFIV 259
Query: 347 ENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGG 406
E + + +G+++ + +V+V + + K V
Sbjct: 260 EERERMKSALREMGYRITDSR-GNFVFVFMEKEEKERLLEHLRTKNVAV--------RSF 310
Query: 407 EGFIRVSAFGHRGN--VLEACKRF 428
+R++ N +L + F
Sbjct: 311 REGVRITIGKREENDMILRELEVF 334
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} Length = 340 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Score = 39.9 bits (91), Expect = 4e-04
Identities = 31/352 (8%), Positives = 84/352 (23%), Gaps = 33/352 (9%)
Query: 78 PEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDI-FVSDGAK 136
P+++ +A+ ++GYG + I + D+ F+S G +
Sbjct: 14 PKIL-DLMAR-----DNMTQHAGYGQDSHCAKAARLIGELL----ERPDADVHFISGGTQ 63
Query: 137 CDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGF 196
++ + + + + ++ I + GK+ +
Sbjct: 64 TNLIACSLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCPDGKLRVADIESALHE 123
Query: 197 FPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNP 256
V + + T + + + S N
Sbjct: 124 NRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVND 183
Query: 257 RSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFN 316
++ +I ++ ++ K R +
Sbjct: 184 LTLADIARLTDMFY----IGATKAGGMFGEALIILN---------DALKPNARHLIKQRG 230
Query: 317 GASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQF 376
G+ E+ + I+ + G ++ + ++
Sbjct: 231 ALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEACGIRLAWPSASNQLFPIL 290
Query: 377 PGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRF 428
+ +E+ + T G +R+ + C RF
Sbjct: 291 EN----TMIAELNNDFDMYTVEPL---KDGTCIMRLCT--SWATEEKECHRF 333
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 433 | |||
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 100.0 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 100.0 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 100.0 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 100.0 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 100.0 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 100.0 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 100.0 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 100.0 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 100.0 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 100.0 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 100.0 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 100.0 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 100.0 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 100.0 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 100.0 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 100.0 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 100.0 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 100.0 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 100.0 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 100.0 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 100.0 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 100.0 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 100.0 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 100.0 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 100.0 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.95 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.94 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.93 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.93 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.93 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.93 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.91 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.9 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.89 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.89 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.89 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.87 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.87 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.82 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.82 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.81 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.8 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.76 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.76 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 99.75 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 99.74 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.74 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.74 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.73 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.72 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 99.71 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.7 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 99.7 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 99.69 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.69 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.69 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.68 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.68 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.66 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.65 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.65 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.65 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.65 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.64 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.63 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.62 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.6 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.6 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.59 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.59 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.58 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.57 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.56 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.56 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.53 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.52 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.49 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.47 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.46 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.46 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.44 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.42 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 99.36 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 98.91 | |
| d1v4ra1 | 100 | Transcriptional repressor TraR, N-terminal domain | 98.62 | |
| d1hw1a1 | 74 | Fatty acid responsive transcription factor FadR, N | 98.46 | |
| d3bwga1 | 78 | Transcriptional regulator YydK {Bacillus subtilis | 98.38 | |
| d2hs5a1 | 69 | Putative transcriptional regulator RHA1_ro03477 {R | 97.93 | |
| d1ijwc_ | 47 | HIN recombinase (DNA-binding domain) {Synthetic} | 86.91 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 83.61 |
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.1e-57 Score=438.40 Aligned_cols=346 Identities=27% Similarity=0.405 Sum_probs=304.6
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--c-CCCCCCcEEEcCChHHHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--D-LGIEEGDIFVSDGAKCDI 139 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~-~~~~~~~i~~~~G~~~al 139 (433)
+++|+|+.|+|++++|+.+.+++.+++. .+..+|+++.|.++||+++|+|+.+ + ...++++|++|+|+++++
T Consensus 25 ~dvi~l~~g~p~~~~p~~v~~~~~~a~~-----~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l 99 (388)
T d1gdea_ 25 KDVISLGIGEPDFDTPQHIKEYAKEALD-----KGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAF 99 (388)
T ss_dssp TTCEECCCCSCCSCCCHHHHHHHHHHHH-----TTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHH
T ss_pred CCeEECCCCCCCCCCCHHHHHHHHHHHh-----cCccCCCCCcCCHHHHHHHHHHHHhhccccCCChheeeeccCcchHH
Confidence 4699999999999999999999999886 3456899999999999999999974 3 234678999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEEcC
Q 045431 140 SR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFFCS 213 (433)
Q Consensus 140 ~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~~ 213 (433)
.+ +..+++|||+|++++|+|+.+...++.+| .+++.++.+.++++..+++. .+++++++++|
T Consensus 100 ~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~ 167 (388)
T d1gdea_ 100 LMGLSAFLKDGEEVLIPTPAFVSYAPAVILAG------------GKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINS 167 (388)
T ss_dssp HHHHTTTCCTTCEEEEEESCCTTHHHHHHHHT------------CEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEES
T ss_pred HHHHHHhcCCCCEEEECCCCcHHHHHHHHHcC------------CEEEEeecccccCCCCCHHHHHHhCccCCeEEEECC
Confidence 97 57788999999999999999999999999 58889998877776666543 36789999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccceeeeecc
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIP 292 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~ 292 (433)
||||||.++|.+++++|+++|++|+++||+||+|+++.+++. ..++.+++...+++|+++||||++|++|+|+||++++
T Consensus 168 P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~ii~~ 247 (388)
T d1gdea_ 168 PCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAP 247 (388)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECC
T ss_pred CcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccCccccEEEEEee
Confidence 999999999999999999999999999999999999887764 5567777666789999999999999999999999999
Q ss_pred ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-hHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccE
Q 045431 293 KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-KAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPY 371 (433)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~ 371 (433)
++++ ..+..........++.+.|.++..++.+... ++++..++.++++++.+.+.|...++.+..|.+|+|
T Consensus 248 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~gg~f 319 (388)
T d1gdea_ 248 SWII--------ERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAFY 319 (388)
T ss_dssp HHHH--------HHHHHHHHTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBTTE
T ss_pred ccch--------hhhhhccccccccccccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhhhhhhhccccccCCCceEE
Confidence 9885 6667667777777889999988888886544 578888899999999999999999998888999999
Q ss_pred EEEECC--CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 372 VWVQFP--GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 372 ~~~~~~--~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
+|++++ +.++.++...+++++||.+.||+.|+..+++++||+++.+++++++++++|+++++
T Consensus 320 l~~~l~~~~~~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis~~~~~e~l~~al~rL~~~l~ 383 (388)
T d1gdea_ 320 IFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERVLK 383 (388)
T ss_dssp ECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHhCCEEEEechhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHH
Confidence 999997 46778888888998999999999998877899999998889999999999999874
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.7e-57 Score=435.71 Aligned_cols=342 Identities=24% Similarity=0.369 Sum_probs=293.3
Q ss_pred CCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHH
Q 045431 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCD 138 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~a 138 (433)
.+.++|+|+.|+|++++|+.+.+++.+++. .+.++|+++.|.++||+++++|+.+ ++++++++|++|+|++++
T Consensus 29 ~G~~vi~l~~g~p~~~~p~~i~~a~~~~~~-----~~~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~a 103 (382)
T d1b5pa_ 29 QGVDLVALTAGEPDFDTPEHVKEAARRALA-----QGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQA 103 (382)
T ss_dssp TTCCCEECCCSSCSSCCCHHHHHHHHHHHH-----TTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHH
T ss_pred CCCCeEECCCCCCCCCCCHHHHHHHHHHHh-----cCCcCCCCCCCCHHHHHHHHhhhhhhcccccccccceecCCHHHH
Confidence 466799999999999999999999999887 4457899999999999999999975 777899999999999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEEc
Q 045431 139 ISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFFC 212 (433)
Q Consensus 139 l~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~ 212 (433)
+.. +..++++||.|++++|+|+++...++.+| ..++.++.++++++..+++. .++++++++|
T Consensus 104 l~~~~~~l~~~gd~vl~~~P~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~~~ 171 (382)
T d1b5pa_ 104 LFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAG------------GVVVEVETLPEEGFVPDPERVRRAITPRTKALVVN 171 (382)
T ss_dssp HHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTT------------CEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEE
T ss_pred HHHHHHHhCCCCCEEEECCCCcHHHHHHHHHhc------------CeEEEEecccccccCCCHHHHHHhCCCCCeEEEEC
Confidence 997 67889999999999999999999999999 47888888776666666432 3678899999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecc
Q 045431 213 SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIP 292 (433)
Q Consensus 213 ~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~ 292 (433)
|||||||.+++.+++++|+++|++|+++||+||+|+++.+++.+.+.... .++++|+++||||+|++||+|+||++++
T Consensus 172 ~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~--~~~~~i~~~s~SK~~~~~GlR~G~~~~~ 249 (382)
T d1b5pa_ 172 SPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRV--APEHTLTVNGAAKAFAMTGWRIGYACGP 249 (382)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGT--CTTTEEEEEESTTTTTCGGGCCEEEECC
T ss_pred CCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHc--CCCCEEEEecchhhccCcHhheEEEEEC
Confidence 99999999999999999999999999999999999999988765444333 3578999999999999999999999999
Q ss_pred ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh--hHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCcc
Q 045431 293 KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF--KAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAP 370 (433)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~ 370 (433)
++++ +.+..........++.+.|.++..++..... .+++..++.++++++.+.+.+...|+.+..|++|+
T Consensus 250 ~~~i--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~p~gg~ 321 (382)
T d1b5pa_ 250 KEVI--------KAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGAF 321 (382)
T ss_dssp HHHH--------HHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSBTT
T ss_pred HHHH--------HHHHHHHHhcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhhcCCeEecCCceE
Confidence 9885 6676666666777888888877777754333 46788889999999999999999999999899999
Q ss_pred EEEEECCC--CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 371 YVWVQFPG--RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 371 ~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
|+|+++++ .+...+.+. +.++||.+.||+.|+. ++++||+++.++++++++++||+++|
T Consensus 322 ~~~~~~~~~~~~~~~~~~~-l~e~gV~v~PG~~F~~--~~~iRis~~~~~e~l~~al~rl~~~L 382 (382)
T d1b5pa_ 322 YVLMDTSPIAPDEVRAAER-LLEAGVAVVPGTDFAA--FGHVRLSYATSEENLRKALERFARVL 382 (382)
T ss_dssp EEEEECTTTCSSHHHHHHH-HHHTTEECEESGGGTC--TTEEEEECCSCHHHHHHHHHHGGGGC
T ss_pred EEeEeCCCCCCCHHHHHHH-HHHCCEEEEeCcccCC--CCeEEEEEcCCHHHHHHHHHHHHHhC
Confidence 99999963 344445544 4556999999999975 57999999889999999999999875
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=100.00 E-value=9.8e-58 Score=437.71 Aligned_cols=346 Identities=25% Similarity=0.393 Sum_probs=300.8
Q ss_pred CCCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHH
Q 045431 60 YPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 60 ~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~ 137 (433)
..+.++|+|+.|+|++++|+.+.+++.+++. .+.++|+++.|.++||+++|+|+.+ ++.+++++|++|+|+++
T Consensus 27 ~~g~~vi~l~~G~p~~~~p~~v~~a~~~~~~-----~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~ 101 (388)
T d1j32a_ 27 AEGIDVCSFSAGEPDFNTPKHIVEAAKAALE-----QGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQ 101 (388)
T ss_dssp TTTCCCEECCCSSCSSCCCHHHHHHHHHHHH-----TTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHH
T ss_pred HCCCCeEECCCCCCCCCCCHHHHHHHHHHHh-----cCCCCCCCCCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHH
Confidence 3456899999999999999999999999886 4457899999999999999999985 77889999999999999
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEE
Q 045431 138 DISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFF 211 (433)
Q Consensus 138 al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l 211 (433)
++.+ +..+++|||.|++++|+|+.|...++..| ..++.++.+.++++..+++. .++++++++
T Consensus 102 al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~~------------~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~ 169 (388)
T d1j32a_ 102 SIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAE------------GTPVILPTTVETQFKVSPEQIRQAITPKTKLLVF 169 (388)
T ss_dssp HHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTT------------CEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEE
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcHHHHHHHHHhc------------CeEEEEecccccccCCCHHHHHHhCCCCCeEEEE
Confidence 9997 57889999999999999999999999888 47778888777776666432 367889999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccC-CCCcceEEEecccccccccccceeee
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIP-GAKEVAIETSSFSKYAGFTGVRLGWT 289 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~-~~~~~vi~i~S~sK~~~~~G~r~G~l 289 (433)
+|||||||.+++.+++++|+++|+++|++||+||+|.++.+++. +.++.... ...+++|+++||||+++++|+|+||+
T Consensus 170 ~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~GlRvG~~ 249 (388)
T d1j32a_ 170 NTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFL 249 (388)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEE
T ss_pred CCCCCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhhhcchhHeEEE
Confidence 99999999999999999999999999999999999999888764 44554442 12368999999999999999999999
Q ss_pred eccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCC
Q 045431 290 VIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKN 368 (433)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~ 368 (433)
+++++++ +.+.+........++...|.++..++.. ..+++++.++.++++++.+.+.|+++ |+.+..|++
T Consensus 250 ~~~~~~~--------~~~~~~~~~~~~~~~~~~q~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~g 320 (388)
T d1j32a_ 250 AGPVPLV--------KAATKIQGHSTSNVCTFAQYGAIAAYEN-SQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDG 320 (388)
T ss_dssp ECCHHHH--------HHHHHHHHTTTCSCCHHHHHHHHHHHHS-CSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCB
T ss_pred EECHHHH--------HHHHHhhhhccccccHHHHHHHhhcccc-hHHHHHHHHHHHHHHHHHHHHHHHhCCCCEecCCCc
Confidence 9999885 6666666666677889999988888764 35789999999999999999999988 899989999
Q ss_pred ccEEEEECC--CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 369 APYVWVQFP--GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 369 g~~~~~~~~--~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
|+|+|++++ ..++.++..++++++||.+.||..|+. ++++||+++.+++++++++++|+++++
T Consensus 321 g~~l~~~l~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~--~~~~Rls~~~~~e~l~~al~rl~~~l~ 385 (388)
T d1j32a_ 321 AFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGA--DDCIRLSYATDLDTIKRGMERLEKFLH 385 (388)
T ss_dssp TTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTC--TTBEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHhCCEEEEeccccCC--CCeEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 999999997 456778889999888999999999974 689999998899999999999999874
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=6.4e-56 Score=426.03 Aligned_cols=348 Identities=25% Similarity=0.328 Sum_probs=295.1
Q ss_pred CCCceEEecCCCC---CCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCCh
Q 045431 61 PDAEVISLGIGDT---TEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGA 135 (433)
Q Consensus 61 ~~~~~i~l~~g~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~ 135 (433)
.+.++|+|+.|+| ++++|+.+.+++.+++. .+.++|++..|.++||+++++|+++ ++.+++++|++|+|+
T Consensus 28 ~G~~vi~l~~G~P~~~df~~p~~i~~a~~~a~~-----~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~ 102 (395)
T d1xi9a_ 28 KGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIK-----EGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAV 102 (395)
T ss_dssp TTCCCEECCCCCGGGTTCCCCHHHHHHHHHHHH-----TTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHH
T ss_pred CCCCeEECCCCCCCCCCCCCCHHHHHHHHHHHh-----cCCCCCCCCCCCHHHHHHHHHhhhhccccccccccccccccc
Confidence 3667999999997 68899999999999986 3456799999999999999999986 778899999999999
Q ss_pred HHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEE
Q 045431 136 KCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDII 209 (433)
Q Consensus 136 ~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i 209 (433)
++++.+ +..++.+||+|++++|+|+.+...++..| ..++.++...++++..+++. .++++++
T Consensus 103 ~~~~~~~~~~~~~~Gd~vlv~~P~y~~~~~~~~~~g------------~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~v 170 (395)
T d1xi9a_ 103 TEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYG------------GKPVEYRTIEEEDWQPDIDDIRKKITDRTKAI 170 (395)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTT------------CEEEEEEEEGGGTSEECHHHHHHHCCTTEEEE
T ss_pred chhhhhhhhhhcCCCCEEEEcCCccccchhhhhhcC------------CEEEEEeccccccccchHHHHHHhhcccccEE
Confidence 999997 58889999999999999999999999999 47888887776677666543 4688999
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeee
Q 045431 210 FFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWT 289 (433)
Q Consensus 210 ~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l 289 (433)
+++|||||||.+++.+++++|+++|++|+++||+||+|.++.+++.+.+...+.. .+++|+++||||+++++|+|+||+
T Consensus 171 ~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~~~~GlRvG~~ 249 (395)
T d1xi9a_ 171 AVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTK-DVPVIVMNGLSKVYFATGWRLGYM 249 (395)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCS-SSCEEEEEESTTTTCCGGGCCEEE
T ss_pred EecCCCCCccchhhHHHHHHHHhhhhhcCeeEEeccccccccccccccchhhcCC-CCCEEEEeCcchhcccchhhcEee
Confidence 9999999999999999999999999999999999999999888765555555543 568999999999999999999998
Q ss_pred eccccccccCCcchhHHHHH---HHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcC-Ceeec
Q 045431 290 VIPKELLFSDGFPVAKDFNR---IVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLG-FKVYG 365 (433)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~ 365 (433)
+++.... . ...+.+ ........++.++|.++..++.+ ..+|+++.++.++++++.+.+.|++.+ +.+..
T Consensus 250 ~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 322 (395)
T d1xi9a_ 250 YFVDPEN--K----LSEVREAIDRLARIRLCPNTPAQFAAIAGLTG-PMDYLKEYMKKLKERRDYIYKRLNEIPGISTTK 322 (395)
T ss_dssp EEECTTC--T----THHHHHHHHHHHHHTCCSCSHHHHHHHHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHTSTTEECCC
T ss_pred EecCHHH--H----HHHHHHHHHHhhcCCCCcCHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHhCCCceecC
Confidence 7653221 0 122222 22334556788999988888874 357899999999999999999999984 67788
Q ss_pred CCCccEEEEECCC---CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 366 GKNAPYVWVQFPG---RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 366 ~~~g~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
|++|+|+|++++. .++.+++.++++++||.+.||..|+..+++++||+++.+.+++++++++|+++++
T Consensus 323 p~gg~~~~~~l~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris~~~~~e~l~eal~rl~~~l~ 393 (395)
T d1xi9a_ 323 PQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDRFEKFMK 393 (395)
T ss_dssp CCBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred CCeeEEEeEECCCCCCCCHHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 8899999999872 4677888899988999999999998877899999998899999999999999874
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=100.00 E-value=5.6e-55 Score=422.90 Aligned_cols=348 Identities=19% Similarity=0.260 Sum_probs=295.8
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCC-CCcEEEcCChHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIE-EGDIFVSDGAKCDIS 140 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~-~~~i~~~~G~~~al~ 140 (433)
++|+|+.|+|++++|+.+.+++.+++.+.. ...++|+++.|.++||++||+|+++ +..++ .++|++|+|+++++.
T Consensus 27 ~~I~L~~G~Pd~~~p~~i~eal~~a~~~~~--~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~ 104 (418)
T d2r5ea1 27 KPLNLGQGFPDYHAPKYALNALAAAANSPD--PLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALY 104 (418)
T ss_dssp CCEECSSSCCSSCCCHHHHHHHHHHHTCSC--GGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred CCEEccCCCCCCCCCHHHHHHHHHHHhCCC--ccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhh
Confidence 579999999999999999999999987543 3456899999999999999999986 66666 489999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCc--------ccCCC-----CCCCc
Q 045431 141 R-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGF--------FPDLS-----TVART 206 (433)
Q Consensus 141 ~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-----~~~~~ 206 (433)
+ +..++++||.|++++|+|+.+...+...| ..++.++.++++.. ..+.+ ...++
T Consensus 105 ~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (418)
T d2r5ea1 105 ATIQGHVDEGDEVIIIEPFFDCYEPMVKAAG------------GIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKT 172 (418)
T ss_dssp HHHHHHCCTTCEEEEEESCCTTHHHHHHHTT------------CEEEEEECEESCCSSCEEGGGEECCHHHHHHHCCTTE
T ss_pred hhhhhccccccceeccccccchhhHHHHHcC------------CeEEEEEecccccccchhhhhhhhhHHHHhhhhhccc
Confidence 7 57899999999999999999999999999 47777777654321 12211 13678
Q ss_pred cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccc
Q 045431 207 DIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVR 285 (433)
Q Consensus 207 ~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r 285 (433)
+++++++||||||.+++.+++++|+++|++|+++||+||+|.++.+++. ..++..++...+++++++|+||.+++||+|
T Consensus 173 ~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~pGlR 252 (418)
T d2r5ea1 173 KMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWK 252 (418)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGC
T ss_pred cceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccccceeeeeecCCccccCCCcc
Confidence 8999999999999999999999999999999999999999999888764 456666666678999999999999999999
Q ss_pred eeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCc------CChhHHHHHHHHHHHHHHHHHHHHhhc
Q 045431 286 LGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSP------EGFKAVHEVIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 286 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~------~~~~~~~~~~~~~~~~~~~l~~~l~~~ 359 (433)
+||++++++++ +.+.+.......+.+.+.|.++...+.. ...++++++++.++.+++.+.+.|++.
T Consensus 253 iG~~~~~~~~i--------~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 324 (418)
T d2r5ea1 253 IGWAYGPEALL--------KNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV 324 (418)
T ss_dssp CEEEESCHHHH--------HHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccccchhh--------hhhhhcccccccccccchhhhccccccccccccccchhhHHHHHHHHHHhhhhHHhhHhhc
Confidence 99999999885 6777766666667888888877766532 223678999999999999999999999
Q ss_pred CCeeecCCCccEEEEECCC-------------CChHHHHHHHHHcCCeEecCCCCCCCC-----CCCeEEEeeccChhHH
Q 045431 360 GFKVYGGKNAPYVWVQFPG-------------RSSWDVFSEILEKTHVVTTPGSGFGPG-----GEGFIRVSAFGHRGNV 421 (433)
Q Consensus 360 g~~~~~~~~g~~~~~~~~~-------------~~~~~~~~~l~~~~gi~v~~g~~f~~~-----~~~~iRi~~~~~~~~l 421 (433)
|+.+..|++|+|+|+++++ .++.++...+++++||.+.||..|+.. ++++||||++.+++++
T Consensus 325 g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~iRis~~~~~e~l 404 (418)
T d2r5ea1 325 GMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENL 404 (418)
T ss_dssp TCEEEECSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTEEEEECCSCHHHH
T ss_pred CCcccCCCceeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCCCccCCCCEEEEEecCCHHHH
Confidence 9999999999999999852 245678888999899999999999753 3589999998899999
Q ss_pred HHHHHHHHHhhC
Q 045431 422 LEACKRFKHLYK 433 (433)
Q Consensus 422 ~~~l~~l~~~l~ 433 (433)
++++++|++++.
T Consensus 405 ~~a~~rl~~~lg 416 (418)
T d2r5ea1 405 QKAAEILRKWKG 416 (418)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc
Confidence 999999999863
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.2e-54 Score=413.19 Aligned_cols=341 Identities=24% Similarity=0.408 Sum_probs=294.7
Q ss_pred CCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHH
Q 045431 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCD 138 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~a 138 (433)
.+.++|+|+.|+|++++|+.+.+++.+.+. .+.++|+++.|.++||+++++++.+ ++..++++|++|+|++++
T Consensus 26 ~G~~vI~l~~G~p~~~~p~~i~~~~~~~~~-----~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~a 100 (375)
T d1o4sa_ 26 KGEDVINLTAGEPDFPTPEPVVEEAVRFLQ-----KGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQA 100 (375)
T ss_dssp TTCCCEECCCSSCSSCCCHHHHHHHHHHHT-----TCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHH
T ss_pred CCCCeEECCCcCCCCCCCHHHHHHHHHHHh-----cCCcCCCCCcCCHHHHHHHHhhhhhccccccccccccccCcHHHH
Confidence 356799999999999999999999999876 3456899999999999999999985 777889999999999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCC-----CCCCccEEEEc
Q 045431 139 ISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS-----TVARTDIIFFC 212 (433)
Q Consensus 139 l~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~l~ 212 (433)
+.+ +..++++||.|++++|+|+.+.......+ .....++.+.++++..+.+ ...++++++++
T Consensus 101 l~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 168 (375)
T d1o4sa_ 101 LFNAFMALLDPGDEVIVFSPVWVSYIPQIILAG------------GTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLIN 168 (375)
T ss_dssp HHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTT------------CEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEE
T ss_pred HHHHHHHHhCCCCEEEEccCccccchhhhhccc------------cccccccccccccccchhHHHHHhhccCccEEEEe
Confidence 997 68899999999999999999999988888 3666777766666665543 24678899999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecc
Q 045431 213 SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIP 292 (433)
Q Consensus 213 ~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~ 292 (433)
|||||||.+++.+++++|+++|++|+++||+||+|.++.+++.+.......+..+++|+++||||++++||+|+||++++
T Consensus 169 nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~R~G~~~~~ 248 (375)
T d1o4sa_ 169 SPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISS 248 (375)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECC
T ss_pred CCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhhccCCcccccccccc
Confidence 99999999999999999999999999999999999998887665555555555789999999999999999999999999
Q ss_pred ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEE
Q 045431 293 KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYV 372 (433)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~ 372 (433)
++.+ +.+...........+.+.+.++...++... ...++.++++++.+.+.|++.|+.+..|++|+|+
T Consensus 249 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~r~~~~~~~l~~~g~~~~~p~gg~f~ 316 (375)
T d1o4sa_ 249 EKVA--------TAVSKIQSHTTSCINTVAQYAALKALEVDN----SYMVQTFKERKNFVVERLKKMGVKFVEPEGAFYL 316 (375)
T ss_dssp HHHH--------HHHHHHHHHHTCSCCHHHHHHHHHHTTCCC----HHHHHHHHHHHHHHHHHHHHTTCCCCCCSBSSEE
T ss_pred ccch--------hhhhhhhccccccccccchhhhhhhcccch----hhhHHHHHHHHHHHHHHHHhcCceEecCCccEEE
Confidence 9885 666666666666678888887777766433 5567789999999999999999999999999999
Q ss_pred EEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 373 WVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 373 ~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
|+++++ ++.+++.++++++||.+.||+.|+. +++|||+++.+++++++++++|+++++
T Consensus 317 ~~~~~~-~~~~~~~~ll~~~gV~v~pG~~F~~--~g~iRis~~~~~e~l~~al~rl~~~l~ 374 (375)
T d1o4sa_ 317 FFKVRG-DDVKFCERLLEEKKVALVPGSAFLK--PGFVRLSFATSIERLTEALDRIEDFLN 374 (375)
T ss_dssp EEECSS-CHHHHHHHHHHHHCEECEEGGGGTC--TTEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred EEECCC-CHHHHHHHHHHhCCEEEEEccccCC--CCeEEEEEcCCHHHHHHHHHHHHHHhc
Confidence 999986 6778888989888999999999974 679999998899999999999999875
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=100.00 E-value=6.3e-54 Score=415.02 Aligned_cols=350 Identities=19% Similarity=0.305 Sum_probs=284.0
Q ss_pred CceEEecCCCCCCC----ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--------cCCCCCCcEE
Q 045431 63 AEVISLGIGDTTEP----IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--------DLGIEEGDIF 130 (433)
Q Consensus 63 ~~~i~l~~g~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--------~~~~~~~~i~ 130 (433)
.++|+|+.|+|+++ +++.+.+++.+.+.. ....+|++..|.++||+++|+|+++ +..+++++|+
T Consensus 30 ~~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I~ 105 (412)
T d1bw0a_ 30 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDS----QECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVV 105 (412)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHT----TCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEE
T ss_pred CCcEECcCCCCCCCCCccccHHHHHHHHHHhhC----CCCCCCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCCCeEE
Confidence 46999999998754 346677777776653 4567899999999999999999975 3457899999
Q ss_pred EcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CC
Q 045431 131 VSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VA 204 (433)
Q Consensus 131 ~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 204 (433)
+|+|+++++.+ +..++++||.|++++|+|+.+...++..| .+++.++++.++++..+++. ..
T Consensus 106 it~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~G------------~~~~~v~~~~~~~~~~~~~~l~~~~~~ 173 (412)
T d1bw0a_ 106 LCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYG------------IGMHFYNCRPENDWEADLDEIRRLKDD 173 (412)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTT------------CEEEEEEEEGGGTTEECHHHHHHHCCT
T ss_pred EecccccchhhhhhhhhccccceeeeeccchhhhhhhhccC------------ccccccccccccccchhhHHHHhhhhc
Confidence 99999999997 68889999999999999999999999999 58888998877777666432 46
Q ss_pred CccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCccccc-C--CCCcceEEEeccccccc
Q 045431 205 RTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEI-P--GAKEVAIETSSFSKYAG 280 (433)
Q Consensus 205 ~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~-~--~~~~~vi~i~S~sK~~~ 280 (433)
++++++++|||||||.+++.+++++|+++|++|+++||+||+|.++.+++. +.+.... . ....++++++||||.++
T Consensus 174 ~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~ 253 (412)
T d1bw0a_ 174 KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLV 253 (412)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTS
T ss_pred cccccccccccccccccchhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccccccccccccCccCc
Confidence 788999999999999999999999999999999999999999999998864 2222221 1 12356789999999999
Q ss_pred ccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-
Q 045431 281 FTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL- 359 (433)
Q Consensus 281 ~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 359 (433)
++|+|+||+++++.... .........+.... ..+++.+.|.++...+.....+++.++++.++++++.+.+.|.+.
T Consensus 254 ~~G~RvG~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~ 330 (412)
T d1bw0a_ 254 VPGWRLGWLLYVDPHGN--GPSFLEGLKRVGML-VCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECI 330 (412)
T ss_dssp CGGGCCEEEEEECTTCS--CHHHHHHHHHHHHH-HTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred cCCCCcccccccchhhc--chhhhhhhcccccc-ccCCchhhhhhcccccccccccccccccchhHHHHHHHHHHHHHhc
Confidence 99999999999877641 11112222222222 334556666666666655556789999999999999999999876
Q ss_pred CCeeecCCCccEEEEECCC------CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 360 GFKVYGGKNAPYVWVQFPG------RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 360 g~~~~~~~~g~~~~~~~~~------~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
|+.+..|.+|+|+|++++. .++.+++.++++++||.+.||+.|+ .++++|||++.++++++++++||+++++
T Consensus 331 g~~~~~p~gg~~l~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg--~~g~iRis~~~~~e~l~eal~Rl~~~l~ 408 (412)
T d1bw0a_ 331 GLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFH--APGFTRLTTTRPVEVYREAVERIKAFCQ 408 (412)
T ss_dssp TEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGT--CTTEEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred CceecCCCCceEEEEeCChhhcCCCCCHHHHHHHHHHhCCEEEEeccccC--CCCeEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 8999889999999998861 3577889999998899999999997 4679999998899999999999998863
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=100.00 E-value=4.5e-54 Score=413.35 Aligned_cols=349 Identities=16% Similarity=0.172 Sum_probs=285.0
Q ss_pred cCCCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChH
Q 045431 59 KYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAK 136 (433)
Q Consensus 59 ~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~ 136 (433)
...+.++|+|+.|+|++++|+.+.+++.+++.+ +..+|+ .|.++||+++|+|+++ ++.+++++|++|+|++
T Consensus 27 ~~~g~~vi~l~~g~pdf~~p~~v~~al~~~~~~-----~~~~Y~--~g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~ 99 (394)
T d1c7na_ 27 PEVGNEVVPLSVADMEFKNPPELIEGLKKYLDE-----TVLGYT--GPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVV 99 (394)
T ss_dssp TTCCTTCCCCCSSSCSSCCCHHHHHHHHHHHHH-----CCCSSB--CCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHH
T ss_pred HhcCCCeEEccCCCCCCCCCHHHHHHHHHHHhC-----CCcCCC--CCCHHHHHHHHHHHHHhcCCCCCCcceEeeccch
Confidence 345668999999999999999999999998863 355784 4789999999999985 7778999999999999
Q ss_pred HHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccC-CcccCCC------CCCCccE
Q 045431 137 CDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAEN-GFFPDLS------TVARTDI 208 (433)
Q Consensus 137 ~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~ 208 (433)
+++.+ +..+++|||.|++++|.|+++.......|. ..+.++....+ .+..+.+ ..+++++
T Consensus 100 ~al~~~~~~~~~pgd~vi~~~p~~~~~~~~~~~~g~------------~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 167 (394)
T d1c7na_ 100 PAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQER------------KIIECELLEKDGYYTIDFQKLEKLSKDKNNKA 167 (394)
T ss_dssp HHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHTTTC------------EEEECCCEEETTEEECCHHHHHHHHTCTTEEE
T ss_pred hhhhhhhccccccccccccccCcccchhhHHhhhhh------------cccccccccccccccchhhhhhhhhccccceE
Confidence 99997 688999999999999999999999998884 55555554332 2333321 2367899
Q ss_pred EEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCC-Cccccc-CCCCcceEEEecccccccccccce
Q 045431 209 IFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNP-RSIFEI-PGAKEVAIETSSFSKYAGFTGVRL 286 (433)
Q Consensus 209 i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~-~~~~~~-~~~~~~vi~i~S~sK~~~~~G~r~ 286 (433)
++++|||||||.+++.+++++|+++|++|+++||+||+|.++.+++.. .+.... ....++++++.|+||.++++|+|+
T Consensus 168 i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~ 247 (394)
T d1c7na_ 168 LLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGM 247 (394)
T ss_dssp EEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCC
T ss_pred EEecccccccceeccHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcccccceeeccccccccccccccc
Confidence 999999999999999999999999999999999999999999887653 222222 122468899999999999999999
Q ss_pred eeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc--CCeee
Q 045431 287 GWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL--GFKVY 364 (433)
Q Consensus 287 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g~~~~ 364 (433)
||+++++..+ .+.+..........++...+.++.........++.++.++.++++++.+.+.++.. ++.+.
T Consensus 248 g~~~~~~~~i-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (394)
T d1c7na_ 248 SNIIIKNPDI-------RERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAP 320 (394)
T ss_dssp EEEECCCHHH-------HHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCC
T ss_pred ccccccChhh-------hhhhhhhhhhccccccccccchhhhhhhcchhhhhcccccccchhhhhhhhhhhccccceeec
Confidence 9999988765 45566555544444444444444444433445678999999999999999999875 67777
Q ss_pred cCCCccEEEEECC--CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 365 GGKNAPYVWVQFP--GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 365 ~~~~g~~~~~~~~--~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
.|++|+|+|++++ +.++.++...|++++||.+.||+.|+..+++++|||++.++++++++++||+++++
T Consensus 321 ~p~g~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~i~eal~rl~~~l~ 391 (394)
T d1c7na_ 321 LIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALK 391 (394)
T ss_dssp CCSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred CCCceeEEEEECCCCCCCHHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 8889999999998 56788888999999999999999999878899999998889999999999998863
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.6e-53 Score=406.35 Aligned_cols=341 Identities=21% Similarity=0.297 Sum_probs=293.0
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCC-cEEEcCChHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEG-DIFVSDGAKCDIS 140 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~-~i~~~~G~~~al~ 140 (433)
++|+|+.|.|++++|+.+.+++.+++. ...++|++..|.++||+++|+|+++ ++.++++ +|++|+|+++++.
T Consensus 27 ~~i~l~~G~Pd~~~p~~i~~a~~~~~~-----~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~ 101 (382)
T d1u08a_ 27 QAINLSQGFPDFDGPRYLQERLAHHVA-----QGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALY 101 (382)
T ss_dssp TCEECCCSSCSSCCCHHHHHHHHHHHH-----TTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHH
T ss_pred CCEEccCCCCCCCCCHHHHHHHHHHHh-----cCCCCCCCCcCCHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHH
Confidence 689999999999999999999999886 3456899999999999999999986 6666665 5999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEEcCC
Q 045431 141 R-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFFCSP 214 (433)
Q Consensus 141 ~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~~p 214 (433)
+ +..++++||.|++++|+|+.+.......|. ..+.++.+.+ ++..+++. .+++++++++||
T Consensus 102 ~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~------------~~~~~~~~~~-~~~~d~~~l~~~~~~~~~~i~l~~P 168 (382)
T d1u08a_ 102 AAITALVRNGDEVICFDPSYDSYAPAIALSGG------------IVKRMALQPP-HFRVDWQEFAALLSERTRLVILNTP 168 (382)
T ss_dssp HHHHHHCCTTCEEEEEESCCTTHHHHHHHTTC------------EEEEEECCTT-TCCCCHHHHHHHCCTTEEEEEEESS
T ss_pred HHHhhcccccceEEEecccccchhhhhhhccc------------cceecccccc-cccCCHHHHhhhhccCccEEEECCC
Confidence 7 688899999999999999999999999983 5556665543 44444332 468899999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccceeeeeccc
Q 045431 215 NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPK 293 (433)
Q Consensus 215 ~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~ 293 (433)
|||||.+++.+++++|+++|.+++++++.|++|..+.+.+. +.+....+...+++|++.|+||.+++||+|+||+++++
T Consensus 169 ~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG~RiG~~v~~~ 248 (382)
T d1u08a_ 169 HNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPA 248 (382)
T ss_dssp CTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCH
T ss_pred CcccccccccccchhhhhhhccccceeeeecchhhccccccccccccccccccCcEEEEeeccccccCCcccchhhhccc
Confidence 99999999999999999999999999999999998777653 33333333345789999999999999999999999999
Q ss_pred cccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEE
Q 045431 294 ELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVW 373 (433)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~ 373 (433)
+++ +.+.........+++.+.|.++..++++. .+++..+++.++++++.+.+.+...|+.+..|++|+|+|
T Consensus 249 ~~~--------~~~~~~~~~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~p~gg~~~~ 319 (382)
T d1u08a_ 249 PIS--------AEIRKVHQYLTFSVNTPAQLALADMLRAE-PEHYLALPDFYRQKRDILVNALNESRLEILPCEGTYFLL 319 (382)
T ss_dssp HHH--------HHHHHHHHHHTSSCCHHHHHHHHHHHHHC-THHHHTHHHHHHHHHHHHHHHTTSSSCEECCCCBSSEEE
T ss_pred hhH--------HHHHhhhcccccccccccccccccccccc-hHHHHHHHHHHHhhhhhhhhhhccCCcEEecCCceEEEE
Confidence 885 67777777777789999999999998744 478899999999999999999988899999999999999
Q ss_pred EECC---CCChHHHHHHHHHcCCeEecCCCCCCC--CCCCeEEEeeccChhHHHHHHHHHHHh
Q 045431 374 VQFP---GRSSWDVFSEILEKTHVVTTPGSGFGP--GGEGFIRVSAFGHRGNVLEACKRFKHL 431 (433)
Q Consensus 374 ~~~~---~~~~~~~~~~l~~~~gi~v~~g~~f~~--~~~~~iRi~~~~~~~~l~~~l~~l~~~ 431 (433)
++++ ..++.++..++++++||.+.||+.|+. .+.++||||++.++++++++++||+++
T Consensus 320 ~~~~~~~~~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~~~~~e~l~~al~RL~~l 382 (382)
T d1u08a_ 320 VDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQL 382 (382)
T ss_dssp EECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHHHHTTC
T ss_pred EecCCCCCCCHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEEEeCCHHHHHHHHHHHhCC
Confidence 9998 357788899999999999999999974 356799999988999999999999864
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.7e-54 Score=415.15 Aligned_cols=348 Identities=18% Similarity=0.271 Sum_probs=295.0
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCC-CcEEEcCChHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEE-GDIFVSDGAKCD 138 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~-~~i~~~~G~~~a 138 (433)
+.++|+|+.|+|++++|+.+.+++.+++... ....+|++..|.++||++||+|+++ ++.+++ ++|++|+|++++
T Consensus 24 ~~dvI~l~~G~p~~~~p~~v~~a~~~al~~~---~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~a 100 (418)
T d1w7la_ 24 EHDVVNLGQGFPDFPPPDFAVEAFQHAVSGD---FMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGA 100 (418)
T ss_dssp TSCCEECCCCSCSSCCCHHHHHHHHHHTSSC---GGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHH
T ss_pred CCCCEECCCCCCCCCCCHHHHHHHHHHHhCC---CcccCCCCCcCCHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHH
Confidence 3469999999999999999999999988642 2345799999999999999999986 555664 789999999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCcc----------CCcccCCC-----C
Q 045431 139 ISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAE----------NGFFPDLS-----T 202 (433)
Q Consensus 139 l~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~-----~ 202 (433)
+.+ +..++++||.|++++|+|+.|...+...|. +++.++.++. .++..+.+ .
T Consensus 101 l~~~~~~l~~~g~~vlv~~p~~~~y~~~~~~~g~------------~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 168 (418)
T d1w7la_ 101 LFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGG------------RPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKF 168 (418)
T ss_dssp HHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTC------------EEEEEECEECC---CCSEEGGGEECCHHHHHHHC
T ss_pred HHHHHHhhccCCceeeccccccchhHHHHHHcCC------------EeeccccccccccccccccccCcccchhhhhccc
Confidence 997 688899999999999999999999999995 4555544321 22333321 2
Q ss_pred CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccc
Q 045431 203 VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGF 281 (433)
Q Consensus 203 ~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~ 281 (433)
.++++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.+++. +.++.++++..++++++.|+||.+++
T Consensus 169 ~~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 248 (418)
T d1w7la_ 169 TSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSA 248 (418)
T ss_dssp CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTC
T ss_pred cccccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCccccC
Confidence 46788899999999999999999999999999999999999999999998864 56777777667899999999999999
Q ss_pred cccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCC------hhHHHHHHHHHHHHHHHHHHH
Q 045431 282 TGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEG------FKAVHEVIGFYKENTDIIVET 355 (433)
Q Consensus 282 ~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~------~~~~~~~~~~~~~~~~~l~~~ 355 (433)
||+|+||++++++++ ..+.+.......+++.+.|.++..++.+.. .+++..+++.++++++.+.+.
T Consensus 249 pG~RvG~~v~~~~~~--------~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~ 320 (418)
T d1w7la_ 249 TGWKVGWVLGPDHIM--------KHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRS 320 (418)
T ss_dssp GGGCCEEEECCHHHH--------HHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccccchhhh--------hhhccccccccccccchhhHHHHHHhhhccccccccccccccchhhhhhhhhhhhhh
Confidence 999999999999885 777777777777889999988887775321 257889999999999999999
Q ss_pred HhhcCCeeecCCCccEEEEECCC--------------CChHHHHHHHHHcCCeEecCCCCCCC-----CCCCeEEEeecc
Q 045431 356 FNSLGFKVYGGKNAPYVWVQFPG--------------RSSWDVFSEILEKTHVVTTPGSGFGP-----GGEGFIRVSAFG 416 (433)
Q Consensus 356 l~~~g~~~~~~~~g~~~~~~~~~--------------~~~~~~~~~l~~~~gi~v~~g~~f~~-----~~~~~iRi~~~~ 416 (433)
|++.|+.+..|++|+|+|++++. ..+.+++..+++++||.+.||+.|+. .++++||||++.
T Consensus 321 L~~~g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iRis~~~ 400 (418)
T d1w7la_ 321 LQSVGLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK 400 (418)
T ss_dssp HHTTTCEEEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCC
T ss_pred hhhcCCcccCCCceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCCCccCCCCCEEEEEEcC
Confidence 99999999999999999998851 23567888999999999999999963 357899999988
Q ss_pred ChhHHHHHHHHHHHhh
Q 045431 417 HRGNVLEACKRFKHLY 432 (433)
Q Consensus 417 ~~~~l~~~l~~l~~~l 432 (433)
+++++++++++|+++.
T Consensus 401 ~~~~l~~a~~rl~~~~ 416 (418)
T d1w7la_ 401 DEATLQAMDEKLRKWK 416 (418)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999999864
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=8.6e-52 Score=397.13 Aligned_cols=344 Identities=20% Similarity=0.278 Sum_probs=287.0
Q ss_pred CCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHH
Q 045431 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCD 138 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~a 138 (433)
.+.++|+|+.|+|++++|+.+.+++.++. ....+|++..|.++||+++|+|+++ ++.+++++|++|+|++++
T Consensus 26 ~g~~vi~l~~G~p~~~~p~~~~~al~~~~------~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~ 99 (389)
T d2gb3a1 26 RGVRIHHLNIGQPDLKTPEVFFERIYENK------PEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEA 99 (389)
T ss_dssp TTCEEEECSSCCCCSCCCTHHHHHHHHTC------CSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHH
T ss_pred cCCCEEECCCCCCCCCCCHHHHHHHHhcC------CCCCCCCCCcCCHHHHHHHHHHHHHhcCCCcccceEEeccccccc
Confidence 45679999999999999999988887643 4567899999999999999999985 677889999999999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC--CC--CCCCccEEEEcC
Q 045431 139 ISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD--LS--TVARTDIIFFCS 213 (433)
Q Consensus 139 l~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~i~l~~ 213 (433)
+.+ +..++++||.|++++|+|+.+...+...|. ..+.++.+.++....+ +. ..+++++++++|
T Consensus 100 l~~~~~~l~~~gd~V~i~~P~y~~~~~~~~~~g~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n 167 (389)
T d2gb3a1 100 ILFSFAVIANPGDEILVLEPFYANYNAFAKIAGV------------KLIPVTRRMEEGFAIPQNLESFINERTKGIVLSN 167 (389)
T ss_dssp HHHHHHHHCCTTCEEEEEESCCTHHHHHHHHHTC------------EEEEEECCGGGTSCCCTTGGGGCCTTEEEEEEES
T ss_pred ccccccccccCCCeEEEeCCCCccccccccccCc------------cccccccccccccchhhhhhhhcccCccEEEeCC
Confidence 997 578899999999999999999999999993 6667777654443322 11 246889999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccc
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPK 293 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~ 293 (433)
||||||.+++.+++++|+++|++|+++||+||+|.++.+++.+.+.... ..++++++.|+||.++++|+|+||+++++
T Consensus 168 P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~--~~~~~~v~~s~sK~~~~~GlRiG~~~~~~ 245 (389)
T d2gb3a1 168 PCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSI--ESDKVVVIDSVSKKFSACGARVGCLITRN 245 (389)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGS--CCTTEEEEEESTTTTTCGGGCCEEEECSC
T ss_pred CCccccccchHHHHHHHHhhcccCCEEEEEecccccccccccccccccc--ccccccccccccccccCcccceeeeeccc
Confidence 9999999999999999999999999999999999999888765544443 35678999999999999999999999988
Q ss_pred cccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCC-eeecCCCccEE
Q 045431 294 ELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGF-KVYGGKNAPYV 372 (433)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~-~~~~~~~g~~~ 372 (433)
+.+ ...... .......++.+.|.++..++. ....+++++++.++++++.+.+.|+++|+ .+..|.+|+|+
T Consensus 246 ~~i-------~~~~~~-~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~g~~~ 316 (389)
T d2gb3a1 246 EEL-------ISHAMK-LAQGRLAPPLLEQIGSVGLLN-LDDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYI 316 (389)
T ss_dssp HHH-------HHHHHH-HHHHSCCCCHHHHHHHHHHHT-CCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSBSSEE
T ss_pred hhH-------HHHHhh-hhhcccccccccccccccccc-ccchhcccccccccccchhhhhhhhhhccccccCCCceEEE
Confidence 764 233333 344455567788887777776 34578899999999999999999999965 46778899999
Q ss_pred EEECCCCChHHHHHHHHHc-----CCeEecCCCCCCCC---CCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 373 WVQFPGRSSWDVFSEILEK-----THVVTTPGSGFGPG---GEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 373 ~~~~~~~~~~~~~~~l~~~-----~gi~v~~g~~f~~~---~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
|++++..++.++...++++ .||.+.||+.|+.. +++++||+++.+++++++++++|+++|+
T Consensus 317 ~~~lp~~~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis~~~~~~~l~~a~~~L~~~lk 385 (389)
T d2gb3a1 317 TAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEGLK 385 (389)
T ss_dssp EEECSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 9999977888888888775 47899999988642 4689999998899999999999998764
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-51 Score=391.61 Aligned_cols=342 Identities=17% Similarity=0.246 Sum_probs=277.7
Q ss_pred eEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHHHHH-
Q 045431 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDISR- 141 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~al~~- 141 (433)
+|+|++|+|++++|+.+.+++.+++. .+.++|++..| +++|+++++++++ ++.+++++|++|+|+++++..
T Consensus 1 ~~~~~~~~~df~~p~~i~eal~~~~~-----~~~~~Y~~~~g-~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~ 74 (361)
T d1d2fa_ 1 LLPFTISDMDFATAPCIIEALNQRLM-----HGVFGYSRWKN-DEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSEL 74 (361)
T ss_dssp CEECCSSSCSSCCCHHHHHHHHHHHT-----TCCCCCCCSCC-HHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHH
T ss_pred CcCcCCCCCCCCCCHHHHHHHHHHHh-----CCCCCCCCCCC-HHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHH
Confidence 58999999999999999999999886 44568988777 7899999999986 677889999999999999997
Q ss_pred HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCcc-CCcccCCCC------CCCccEEEEcCC
Q 045431 142 LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAE-NGFFPDLST------VARTDIIFFCSP 214 (433)
Q Consensus 142 l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~i~l~~p 214 (433)
+..+++|||+|++++|+|+++...++..|. .++.++.+.. +++..+++. .+++++++++||
T Consensus 75 ~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~------------~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p 142 (361)
T d1d2fa_ 75 IRQWSETGEGVVIHTPAYDAFYKAIEGNQR------------TVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSP 142 (361)
T ss_dssp HHHSSCTTCEEEEEESCCHHHHHHHHHTTC------------EEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESS
T ss_pred hhhccccccccccccccccchhHHHHhhcc------------eEEeecccccccccccccccchhhcccCCceeEEeccc
Confidence 678889999999999999999999999884 6666666432 233344332 368899999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccceeeeeccc
Q 045431 215 NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPK 293 (433)
Q Consensus 215 ~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~ 293 (433)
|||||.++|.+++++|+++|++++++||+||+|.++.+++. +.++... ..++++++.|+||.++++|+|+||++++.
T Consensus 143 ~NPTG~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~--~~~~~v~~~s~SK~~~~~g~R~g~~~~~~ 220 (361)
T d1d2fa_ 143 QNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNV--ARGDWALLTSGSKSFNIPALTGAYGIIEN 220 (361)
T ss_dssp CTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGT--CCSSEEEEECSHHHHTCGGGCCEEEEECS
T ss_pred ccccccccchhhhhhhhhhhhhhheeeeecccccccccccccccccccc--cccccccccccccccccccccceeeecch
Confidence 99999999999999999999999999999999999988764 4444444 25678999999999999999999998776
Q ss_pred cccccCCcchhHHHHHHHhhcc-CCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc--CCeeecCCCcc
Q 045431 294 ELLFSDGFPVAKDFNRIVCTCF-NGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL--GFKVYGGKNAP 370 (433)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g~~~~~~~~g~ 370 (433)
.... .+.+........ ..++...+.++...+. ....+.++.+..++++++.+.+.+.+. ++.+..|++|+
T Consensus 221 ~~~~------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~gg~ 293 (361)
T d1d2fa_ 221 SSSR------DAYLSALKGRDGLSSPSVLALTAHIAAYQ-QGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTY 293 (361)
T ss_dssp HHHH------HHHHHHHHTTSCCCSCCHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBCS
T ss_pred hHHH------HHHhhhcccccccccchhhhHHHHHHHhh-ccchhhhcccccchhhHHHHHHHhhhhcccccccccCcee
Confidence 5531 122223332222 2344445554444443 334577888999999999998887765 67788888999
Q ss_pred EEEEECC--CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 371 YVWVQFP--GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 371 ~~~~~~~--~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
|+|++++ +.++.++..+|++++||.+.||+.|+..+++++|||++.+++++++++++|+++++
T Consensus 294 ~~~~~l~~~~~~~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis~~~~~e~l~~al~rl~~~l~ 358 (361)
T d1d2fa_ 294 LAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAIR 358 (361)
T ss_dssp EEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred EEEEEccCCCCCHHHHHHHHHHhCCEEEEeccccCCCCCCEEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 9999996 56888999999999999999999999888899999998889999999999999864
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3.2e-50 Score=383.25 Aligned_cols=351 Identities=23% Similarity=0.370 Sum_probs=287.0
Q ss_pred ccCCCCCCcHHHHHHHHHHHhcCCCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHH
Q 045431 38 GKLQAGYLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIAST 117 (433)
Q Consensus 38 ~~l~~g~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~ 117 (433)
.++++ +++.++...... .++|||+.|+|++++|+.+.+++.+++.+ ..+|+++.|.++||++||++
T Consensus 8 ~~~~~-~~~~~~~~la~~-------~~~I~ls~g~p~~~~p~~i~~al~~~l~~------~~~Y~~~~G~~elr~aiA~~ 73 (368)
T d1v2da_ 8 EAAKE-SIFPRMSGLAQR-------LGAVNLGQGFPSNPPPPFLLEAVRRALGR------QDQYAPPAGLPALREALAEE 73 (368)
T ss_dssp GGC----CHHHHHHHHHH-------HTCEECCCCSCSSCCCHHHHHHHHHHTTT------SCSCCCTTCCHHHHHHHHHH
T ss_pred hhcCC-CHHHHHHHHhcc-------CCCEEecCCCCCCCCCHHHHHHHHHHhhc------ccCCCCCcCCHHHHHHHHhh
Confidence 34454 666655432221 14799999999999999999999998743 35899999999999999999
Q ss_pred HhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCcc-CC
Q 045431 118 FYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAE-NG 195 (433)
Q Consensus 118 l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~ 195 (433)
+ ++++++|++|+|+++++.. +..++.+||.|++++|+|+.+.......|. .++.++.+.. +.
T Consensus 74 ~----~~~~~~Iiit~G~~~al~~~~~~l~~~~d~v~~~~p~~~~~~~~~~~~g~------------~~~~~~~~~~~~~ 137 (368)
T d1v2da_ 74 F----AVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGA------------KARLVRLDLTPEG 137 (368)
T ss_dssp H----TSCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTC------------EEEEEECEEETTE
T ss_pred c----ccCCcceeeccchHHHHHHHhhccccccccccccCCcchhhhhHHHhcCC------------ccceecccccccc
Confidence 8 8899999999999999997 678899999999999999999999999984 5666655422 22
Q ss_pred cccCCC---C--CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceE
Q 045431 196 FFPDLS---T--VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAI 270 (433)
Q Consensus 196 ~~~~~~---~--~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi 270 (433)
+..+++ . .+++++++++|||||||.+++.+++++|+++|++||+++|+||+|..+............ ..++++
T Consensus 138 ~~~d~~~l~~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~--~~~~~~ 215 (368)
T d1v2da_ 138 FRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREF--APERTF 215 (368)
T ss_dssp EECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHH--CTTTEE
T ss_pred ccCCHHHHHHhhccCceEEEEcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhcccccccccccc--cccccc
Confidence 333322 1 367889999999999999999999999999999999999999999976665443322222 245678
Q ss_pred EEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-hHHHHHHHHHHHHH
Q 045431 271 ETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-KAVHEVIGFYKENT 349 (433)
Q Consensus 271 ~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~ 349 (433)
++.|+||.++++|+|+||++++++++ +.+.+.......+++.+.|.++..++..... ++++..++.+++++
T Consensus 216 ~~~~~sk~~~~~G~R~g~~~~~~~~~--------~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 287 (368)
T d1v2da_ 216 TVGSAGKRLEATGYRVGWIVGPKEFM--------PRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRR 287 (368)
T ss_dssp EEEEHHHHTTCGGGCCEEEECCTTTH--------HHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred eeeccccccccccccccccccccccc--------chhhhhhhccccccccccccccccccccccchhhHHHHHHHHHHhh
Confidence 89999999999999999999999985 6777777777778899999888888764333 57899999999999
Q ss_pred HHHHHHHhhcCCeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCC--CCCCeEEEeeccChhHHHHHHHH
Q 045431 350 DIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGP--GGEGFIRVSAFGHRGNVLEACKR 427 (433)
Q Consensus 350 ~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~--~~~~~iRi~~~~~~~~l~~~l~~ 427 (433)
+.+.+.|+++|+.+..|++|+|+|+++++.+..+ +++++||.+.||+.|+. .+++++|||++.+++++++++++
T Consensus 288 ~~l~~~l~~~g~~~~~p~g~~~~~~~l~~~~~~~----ll~~~gI~v~pg~~F~~~~~~~~~iRis~~~~~e~i~~ai~r 363 (368)
T d1v2da_ 288 DLLAGGLRAMGLRVYVPEGTYFLMAELPGWDAFR----LVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALER 363 (368)
T ss_dssp HHHHHHHHHTTCCEECCSBSSEEEEECTTCCHHH----HHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHH
T ss_pred hhhhhhHHhcCcEEecCCceeEEEEeCCccHHHH----HHHhCCEEEEechhhCCCCCCCCEEEEEecCCHHHHHHHHHH
Confidence 9999999999999999999999999999765443 46677999999999874 35789999998889999999999
Q ss_pred HHHhh
Q 045431 428 FKHLY 432 (433)
Q Consensus 428 l~~~l 432 (433)
|+++|
T Consensus 364 L~~~l 368 (368)
T d1v2da_ 364 LGRVV 368 (368)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 99875
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=100.00 E-value=1.8e-50 Score=392.00 Aligned_cols=348 Identities=20% Similarity=0.284 Sum_probs=276.8
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhccc------CCCCCCCCCCCCCHHHHHHHHHHHhc--c--CCCCCCcEEEc
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALST------QEGYSGYGAEQGEKPLRAAIASTFYK--D--LGIEEGDIFVS 132 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~Y~~~~g~~~lr~~la~~l~~--~--~~~~~~~i~~~ 132 (433)
.++|+|+++++.+ ....+.+.+.+....... .....+|++..|.++||++||+|+++ + +.+++++|++|
T Consensus 36 ~G~i~l~~aen~l-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit 114 (428)
T d1iaya_ 36 NGVIQMGLAENQL-CLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMA 114 (428)
T ss_dssp TSBEECSSCCCCS-SHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEE
T ss_pred CceEEeecccCcc-chHHHHHHHHhCCchhhhHhHhhhCHHhccCcCCcchHHHHHHHHHHHHHHhCCCCCCChhhEEEc
Confidence 3599999999754 455555555543221100 01234799999999999999999985 3 34578999999
Q ss_pred CChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHh-CCcccccccccccceEEEeecCccCCcccCCC---------
Q 045431 133 DGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIM-GQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS--------- 201 (433)
Q Consensus 133 ~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 201 (433)
+|+++++.+ +..+++|||.|++++|+|+.+...+... | .+++.++.+.++++..+.+
T Consensus 115 ~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~g------------~~~v~v~~~~~~~~~~d~~~~~~~~~~~ 182 (428)
T d1iaya_ 115 GGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTG------------VQLIPIHCESSNNFKITSKAVKEAYENA 182 (428)
T ss_dssp EHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTC------------CEEEEECCCTTTTTCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCEEEEccCCchHHHHHHHHhcC------------CeEEEeecccccccccccccccchhhhh
Confidence 999999997 6888999999999999999988766544 4 4788888887777666543
Q ss_pred --CCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccC-------CCCcceEE
Q 045431 202 --TVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIP-------GAKEVAIE 271 (433)
Q Consensus 202 --~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~-------~~~~~vi~ 271 (433)
...++++++++|||||||.+++.+++++|+++|++|+++||+||+|+++.+++. +.++.++. ...+++++
T Consensus 183 ~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~ 262 (428)
T d1iaya_ 183 QKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHI 262 (428)
T ss_dssp HHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEE
T ss_pred hccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccccCcccccccccccchhhccccccceEEE
Confidence 235788999999999999999999999999999999999999999999988764 44444332 13478999
Q ss_pred EecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh--hHHHHHHHHHHHHH
Q 045431 272 TSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF--KAVHEVIGFYKENT 349 (433)
Q Consensus 272 i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~~ 349 (433)
++||||.++++|+|+||++++++.+ .+.+.... .....+.+.|.++.+.+..... .++++.++.+++++
T Consensus 263 ~~s~SK~~~~~GlRiG~~~~~~~~l-------~~~~~~~~--~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~l~~r~ 333 (428)
T d1iaya_ 263 VYSLSKDMGLPGFRVGIIYSFNDDV-------VNCARKMS--SFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRH 333 (428)
T ss_dssp EEESTTTSSCGGGCEEEEEESCHHH-------HHHHHHHH--TTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCCcccCCCcccccccccccch-------hhhhhhhh--cccccccccccchhhhhhhhccccccccccccccchhH
Confidence 9999999999999999999876654 24443332 2334677777777777765443 57888999999999
Q ss_pred HHHHHHHhhcCCeeecCCCccEEEEECCCC-------ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc-ChhHH
Q 045431 350 DIIVETFNSLGFKVYGGKNAPYVWVQFPGR-------SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG-HRGNV 421 (433)
Q Consensus 350 ~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~-------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~l 421 (433)
+.+.+.|+..|+++..|++|+|+|++++.. ++.++...+++++||.+.||+.|+..++++|||+|+. +++++
T Consensus 334 ~~~~~~L~~~gi~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~Ll~~~gV~v~PG~~F~~~~~g~~Ris~a~~~~~~l 413 (428)
T d1iaya_ 334 KHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTV 413 (428)
T ss_dssp HHHHHHHHHTTCCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECSSSCHHHH
T ss_pred HHHHHHHHhCCCEEecCCcceEEEEECccccccCCCCCHHHHHHHHHHhCCEEEEcchhcCCCCCCEEEEEeCCCCHHHH
Confidence 999999999999999999999999999731 2346778888889999999999998889999999865 67789
Q ss_pred HHHHHHHHHhh
Q 045431 422 LEACKRFKHLY 432 (433)
Q Consensus 422 ~~~l~~l~~~l 432 (433)
+++++||++++
T Consensus 414 ~~al~Rl~~~l 424 (428)
T d1iaya_ 414 DIALARIRRFV 424 (428)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=100.00 E-value=2.5e-50 Score=391.32 Aligned_cols=349 Identities=19% Similarity=0.273 Sum_probs=275.1
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhc---cc----CCCCCCCCCCCCCHHHHHHHHHHHhc--c--CCCCCCcEEEc
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYAL---ST----QEGYSGYGAEQGEKPLRAAIASTFYK--D--LGIEEGDIFVS 132 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~---~~----~~~~~~Y~~~~g~~~lr~~la~~l~~--~--~~~~~~~i~~~ 132 (433)
.+|+|+++++.+ +-+.+.+.+.+..... .. ......|++..|.++||+++|+|+++ + +.+++++|++|
T Consensus 37 G~i~l~~~en~l-~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~pe~I~it 115 (431)
T d1m7ya_ 37 GIIQMGLAENQL-CFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLT 115 (431)
T ss_dssp SBEECSSCCCCS-CHHHHHHHHHHCCTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEE
T ss_pred cEEEeecccccc-cHHHHHHHHHhCCchhhhhhhhhhccHHhcCCcCCcCcHHHHHHHHHHHHHHhCCCCCCCcceEEEC
Confidence 489999999865 3344444444321100 00 01234699999999999999999985 3 44678999999
Q ss_pred CChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC---------
Q 045431 133 DGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST--------- 202 (433)
Q Consensus 133 ~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 202 (433)
+|+++++.+ +..+++|||.|++++|+|+.+...+...+. .+++.++.+.++++..+.+.
T Consensus 116 ~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~~~~~~~~~~g-----------~~~v~v~~~~~~~~~l~~~~~~~~~~~~~ 184 (431)
T d1m7ya_ 116 AGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTG-----------VEIVPIHCTSSNGFQITETALEEAYQEAE 184 (431)
T ss_dssp EHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTC-----------CEEEEEECCGGGTSCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHhcC-----------ceeccccccchhcccccHHHhhhhhhhhh
Confidence 999999997 578899999999999999998877765432 47888888877777655321
Q ss_pred --CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccC---------CCCcceE
Q 045431 203 --VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIP---------GAKEVAI 270 (433)
Q Consensus 203 --~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~---------~~~~~vi 270 (433)
..++++++++|||||||.+++.+++++|+++|++|+++||+||+|+++.+++. +.++.++. ...++++
T Consensus 185 ~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi 264 (431)
T d1m7ya_ 185 KRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVH 264 (431)
T ss_dssp HTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEE
T ss_pred hccCcceEEEecCccccccccccccccccccccccccCcceeecccccccccCCCCCCCHHHHhhhcccccccccCceEE
Confidence 24688999999999999999999999999999999999999999999888764 44444332 1246899
Q ss_pred EEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh--hHHHHHHHHHHHH
Q 045431 271 ETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF--KAVHEVIGFYKEN 348 (433)
Q Consensus 271 ~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~ 348 (433)
+++||||.+|++|+|+||++++++++ ........ .....+...|.++.+.+.+... +++++.++.++++
T Consensus 265 ~~~s~SK~~~~~G~RiG~~~~~~~~i--------~~~~~~~~-~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~ 335 (431)
T d1m7ya_ 265 VVYSLSKDLGLPGFRVGAIYSNDDMV--------VAAATKMS-SFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQR 335 (431)
T ss_dssp EEEESSSSSCCGGGCEEEEEESCHHH--------HHHHHHHG-GGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred EEecCcccccCCCCccceeccchhhh--------HHHHHHHh-ccccccccccchhhhhhccchhhhhhhhhhhhhhhhh
Confidence 99999999999999999999998875 23333232 2334566666666666654333 5789999999999
Q ss_pred HHHHHHHHhhcCCeeecCCCccEEEEECCCC-------ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc-ChhH
Q 045431 349 TDIIVETFNSLGFKVYGGKNAPYVWVQFPGR-------SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG-HRGN 420 (433)
Q Consensus 349 ~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~-------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~ 420 (433)
++.+.+.|++.|+.+.+|.+|+|+|++++.. ++.++..++++++||.+.||+.|+..+++++||+|+. ++++
T Consensus 336 ~~~l~~~L~~~gi~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~F~~~~~~~~Ri~~a~~~e~~ 415 (431)
T d1m7ya_ 336 QKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERT 415 (431)
T ss_dssp HHHHHHHHHTTTCEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSSCHHH
T ss_pred hhhhhhhhhcCCcEEecCCceeEEEEECccccccCcccCHHHHHHHHHHHCCEEEEeccccCCCCCCEEEEEeCcCCHHH
Confidence 9999999999999999999999999999731 2346788888889999999999998888999999865 6788
Q ss_pred HHHHHHHHHHhhC
Q 045431 421 VLEACKRFKHLYK 433 (433)
Q Consensus 421 l~~~l~~l~~~l~ 433 (433)
++++++||+++++
T Consensus 416 l~~al~rL~~~l~ 428 (431)
T d1m7ya_ 416 LDLAMQRLKAFVG 428 (431)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999863
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=100.00 E-value=5.2e-50 Score=386.47 Aligned_cols=347 Identities=18% Similarity=0.250 Sum_probs=280.3
Q ss_pred CCceEEecCCCCCCC--ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHH
Q 045431 62 DAEVISLGIGDTTEP--IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~ 137 (433)
.+++|+|+.|.|+.. +.+.+.+++.+.+.... ....+|++..|.++||+++|+|+.+ ++.+++++|++|+|+++
T Consensus 28 ~~~~i~l~~G~P~~~~~P~~~~~~~~~~~~~~~~--~~~~~Y~~~~G~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~ 105 (403)
T d1wsta1 28 TSDVISLAGGLPAPETFPVETIKKIAVEVLEEHA--DKALQYGTTKGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQ 105 (403)
T ss_dssp SSSCEECCCCCCCGGGSCHHHHHHHHHHHHHHSH--HHHHSCCCSSCCHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHH
T ss_pred CCCcEECCCCCCCccccCHHHHHHHHHHHHHhCc--ccccCCCCCcCCHHHHHHHHHHHHHHhCCCCChHHeeecccchH
Confidence 346999999998632 34566677777765432 3456899999999999999999985 77789999999999999
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCC---------CCCCCcc
Q 045431 138 DISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDL---------STVARTD 207 (433)
Q Consensus 138 al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 207 (433)
++.+ +..++++||.|++++|+|+.+...+..+| .+++.++.+.++...... .....+.
T Consensus 106 al~~~~~~l~~~gd~v~~~~P~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (403)
T d1wsta1 106 ALDLIGRVFLNPGDPIVVEAPTYLAAIQAFKYYD------------PEFISIPLDDKGMRVDLLEEKLEELRKQGKRVKI 173 (403)
T ss_dssp HHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTC------------CEEEEEEEETTEECHHHHHHHHHHHHHTTCCCCE
T ss_pred HHHHHHHHHhhcCCccccCCCcchhhhHHHhhcc------------ccceeEeecccCCccccccccchhhhhccccccc
Confidence 9998 57788999999999999999999999998 477777776433222111 1123455
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCC-CcccccCCCCcceEEEecccccccccccce
Q 045431 208 IIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNP-RSIFEIPGAKEVAIETSSFSKYAGFTGVRL 286 (433)
Q Consensus 208 ~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~-~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~ 286 (433)
++++++||||||.++|.+++++|+++|++|+++||+||+|.++.+++.+ .++...+. .+++++++||||.++ +|+|+
T Consensus 174 ~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~-~G~Ri 251 (403)
T d1wsta1 174 VYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDD-YGRVIYLGTFSKILA-PGFRI 251 (403)
T ss_dssp EEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCS-SSCEEEEEESTTTTC-GGGCC
T ss_pred cccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccCC-CCcEEEEccccceec-Ccccc
Confidence 6666799999999999999999999999999999999999999888753 44555543 578999999999996 99999
Q ss_pred eeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-hHHHHHHHHHHHHHHHHHHHHhhc---CCe
Q 045431 287 GWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-KAVHEVIGFYKENTDIIVETFNSL---GFK 362 (433)
Q Consensus 287 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~---g~~ 362 (433)
||++++++++ +.+...........+...|.+..+++..... .++++.++.++++++.+.+.|.+. ++.
T Consensus 252 G~~i~~~~~i--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~ 323 (403)
T d1wsta1 252 GWVAAHPHLI--------RKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMPEGVE 323 (403)
T ss_dssp EEEEECHHHH--------HHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCE
T ss_pred cccccchHHH--------HHHHHHHhhhccccccchhhhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhccCCeE
Confidence 9999999885 6666666666667888888877776664444 578999999999999999999875 688
Q ss_pred eecCCCccEEEEECCC-CChHHHHHHHHHcCCeEecCCCCCCC--CCCCeEEEeec-cChhHHHHHHHHHHHhhC
Q 045431 363 VYGGKNAPYVWVQFPG-RSSWDVFSEILEKTHVVTTPGSGFGP--GGEGFIRVSAF-GHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 363 ~~~~~~g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~~--~~~~~iRi~~~-~~~~~l~~~l~~l~~~l~ 433 (433)
+..|.+|+|+|++++. .+...+.+.++ ++||.+.||+.|+. .+++++||+++ .+++++++++++|+++++
T Consensus 324 ~~~p~gg~~~~~~~~~~~~~~~~~~~l~-~~gV~v~pg~~f~~~~~~~~~iRi~~~~~~~~~l~~al~rl~~~l~ 397 (403)
T d1wsta1 324 WTKPEGGMFVRVTLPEGIDTKLMMERAV-AKGVAYVPGEAFFVHRDKKNTMRLNFTYVPEETIREGVRRLAETIK 397 (403)
T ss_dssp ECCCSBSSEEEEECCTTCCTTTTHHHHH-HTTEECEEGGGGSTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHHH
T ss_pred EeCCCceeEEEEECCCCCCHHHHHHHHH-HCCEEEEechhhcCCCCCCCEEEEEecCCCHHHHHHHHHHHHHHHH
Confidence 8889999999999994 45555555555 55999999999874 34689999986 489999999999998864
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=5e-50 Score=388.51 Aligned_cols=347 Identities=17% Similarity=0.301 Sum_probs=279.8
Q ss_pred CCCceEEecCCCCCCC--ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCC-CCCCcEEEcCCh
Q 045431 61 PDAEVISLGIGDTTEP--IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLG-IEEGDIFVSDGA 135 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~-~~~~~i~~~~G~ 135 (433)
.++++|+|+.|.|+.. +++.+.+++.+.+.... ....+|+++.|.++||++||+|+++ ++. +++++|++|+|+
T Consensus 36 ~~~~~I~l~~G~Pd~~~~P~~~~~~~~~~~~~~~~--~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~ 113 (420)
T d1vp4a_ 36 ADKDAISFGGGVPDPETFPRKELAEIAKEIIEKEY--HYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGS 113 (420)
T ss_dssp TSTTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSH--HHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHH
T ss_pred CCCCcEecCCcCCCCccCCHHHHHHHHHHHHhhCC--ccccCCCCCcCCHHHHHHHHHHHHHHhCCCCCCHHHeEeccch
Confidence 4567999999998743 34556666666665432 3456899999999999999999986 554 689999999999
Q ss_pred HHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-C----------CCC
Q 045431 136 KCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-L----------STV 203 (433)
Q Consensus 136 ~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~ 203 (433)
++++.+ +..+++|||.|++++|+|+.+...++..| ..++.++.++++ +..+ + ...
T Consensus 114 ~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g------------~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~ 180 (420)
T d1vp4a_ 114 QQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYL------------ANFVVVPLEDDG-MDLNVLERKLSEFDKNGKI 180 (420)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTT------------CEEEEEEEETTE-ECHHHHHHHHHHHHHTTCG
T ss_pred hhhHHHHHHhhhccccccccccccccchhHHHHHHh------------hhcccccccccc-cccchhhhhhhhhHHHhhc
Confidence 999998 57788999999999999999999999998 478888876542 2221 1 112
Q ss_pred CCccEEE-EcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccc
Q 045431 204 ARTDIIF-FCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGF 281 (433)
Q Consensus 204 ~~~~~i~-l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~ 281 (433)
.+++.++ +++||||||.+++.+++++|+++|++|+++||+||+|.++.+++. ..+....+ .++++++++|+||+++
T Consensus 181 ~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~-~~~~~i~~~s~sk~~~- 258 (420)
T d1vp4a_ 181 KQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIG-GPERVVLLNTFSKVLA- 258 (420)
T ss_dssp GGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHH-CTTTEEEEEESTTTTC-
T ss_pred cccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCcccccccccc-cccceeEEeccccccc-
Confidence 3444444 569999999999999999999999999999999999999988765 33444443 3678999999999985
Q ss_pred cccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-hHHHHHHHHHHHHHHHHHHHHhhc-
Q 045431 282 TGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-KAVHEVIGFYKENTDIIVETFNSL- 359 (433)
Q Consensus 282 ~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~- 359 (433)
+|+|+||++++++++ +.+.+.......+++.+.|.++..++..... +++++.++.++++++.+.+.|++.
T Consensus 259 ~G~RiG~~~~~~~~i--------~~l~~~~~~~~~~~~~~~q~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 330 (420)
T d1vp4a_ 259 PGLRIGMVAGSKEFI--------RKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYF 330 (420)
T ss_dssp GGGCEEEEECCHHHH--------HHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccccccccccchhh--------hhhhhhhhhccccCchhhhhhhhhhcccccccccchhHHHHhhhhcccchhhhhhhh
Confidence 999999999999985 6777777666677889999988888876554 678888999999999999988774
Q ss_pred ----CCeeecCCCccEEEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCC--CCCeEEEeecc-ChhHHHHHHHHHHHh
Q 045431 360 ----GFKVYGGKNAPYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPG--GEGFIRVSAFG-HRGNVLEACKRFKHL 431 (433)
Q Consensus 360 ----g~~~~~~~~g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~--~~~~iRi~~~~-~~~~l~~~l~~l~~~ 431 (433)
|+.+..|.+|+|+|++++ +.++.++.+.+ +++||.+.||+.|+.. +.+++|||++. +++++++++++|+++
T Consensus 331 ~~~~g~~~~~p~gg~f~~~~~~~~~d~~~~~~~l-~~~gV~v~PG~~F~~~~~~~~~iRls~~~~~~e~l~~a~~rL~~~ 409 (420)
T d1vp4a_ 331 SDIPGVKWVKSEGGLFIWLTLPEGFDTWEMFEYA-KRKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREV 409 (420)
T ss_dssp TTSTTCEECCCSBSSEEEEECCTTCCTTTTHHHH-HHHTEECEEGGGGCTTCCCCSEEEEECSSSCHHHHHHHHHHHHHH
T ss_pred ccCCCcEEecCCceEEEEEECCCCCCHHHHHHHH-HHCCeEEEechhhCCCCCCCCEEEEEeCcCCHHHHHHHHHHHHHH
Confidence 788889999999999998 44556666555 5569999999999754 36799999864 789999999999998
Q ss_pred hC
Q 045431 432 YK 433 (433)
Q Consensus 432 l~ 433 (433)
++
T Consensus 410 l~ 411 (420)
T d1vp4a_ 410 VL 411 (420)
T ss_dssp HH
T ss_pred HH
Confidence 63
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=3e-46 Score=353.87 Aligned_cols=328 Identities=15% Similarity=0.216 Sum_probs=267.8
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQ 143 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l~ 143 (433)
++|||+.|.+++++|+.+.+++.+.+.. ...| |+.+..+||+++|+++ ++++++|++|+|+++++.++.
T Consensus 23 ~~idls~~~np~~~p~~~~~a~~~~~~~------~~~Y-p~~~~~~Lr~aia~~~----~v~~~~I~~~~g~~~~~~~~~ 91 (355)
T d1lc5a_ 23 QLLDFSANINPLGMPVSVKRALIDNLDC------IERY-PDADYFHLHQALARHH----QVPASWILAGNGETESIFTVA 91 (355)
T ss_dssp GSEECSSCCCTTCCCHHHHHHHHHTGGG------GGSC-CCTTCHHHHHHHHHHH----TSCGGGEEEESSHHHHHHHHH
T ss_pred heEEccCCCCCCCCCHHHHHHHHHHHHH------hccC-CCCChHHHHHHHHHHh----CCCHHHEEecccHHHHHHHHH
Confidence 5899999999899999999999887643 3468 5567899999999998 899999999999999998865
Q ss_pred HhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCC----CCCCccEEEEcCCCCccc
Q 045431 144 IVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS----TVARTDIIFFCSPNNPTG 219 (433)
Q Consensus 144 ~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~l~~p~nPtG 219 (433)
..+. ++.+++..|.|..+.......+ ..+..++++.++++..+.+ ..+++++++++|||||||
T Consensus 92 ~~~~-~~~~~v~~p~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~l~nP~NPtG 158 (355)
T d1lc5a_ 92 SGLK-PRRAMIVTPGFAEYGRALAQSG------------CEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTG 158 (355)
T ss_dssp HHHC-CSEEEEEESCCTHHHHHHHHTT------------CEEEEEECCGGGTTCCCTTHHHHCCTTCCEEEEESSCTTTC
T ss_pred hhhc-cccccccCCccceecccccccc------------ccceeeeeeccCCccceeeeeeccccccceeeeecccCccc
Confidence 5554 4556677899999888888887 4788888876666654422 247899999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccC
Q 045431 220 AAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSD 299 (433)
Q Consensus 220 ~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~ 299 (433)
.+++.+++++|+++|++|++++|+||+|.++.+.+..... .....+++++++||||.+|++|+|+||++++++.+
T Consensus 159 ~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~--~~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~~~~--- 233 (355)
T d1lc5a_ 159 LLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIP--ALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAA--- 233 (355)
T ss_dssp CCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGG--GCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHH---
T ss_pred ccchhhhhhhhhhhccccccccccccceeeeeeecccccc--cccccccceeecccccccccccccccceeccchhh---
Confidence 9999999999999999999999999999998776543222 22235789999999999999999999999998765
Q ss_pred CcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCCccEEEEECCC
Q 045431 300 GFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAPYVWVQFPG 378 (433)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~~~~~~ 378 (433)
.+.+.+. ......+.++|.++.+++++ ..++.+.++.++++++++.+.|.++ ++.+. |.+|+|+|++++.
T Consensus 234 ----~~~~~~~--~~~~~~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-p~~~~f~~~~~~~ 304 (355)
T d1lc5a_ 234 ----MARMRRQ--QMPWSVNALAALAGEVALQD--SAWQQATWHWLREEGARFYQALCQLPLLTVY-PGRANYLLLRCER 304 (355)
T ss_dssp ----HHHHHHH--SCTTCSCHHHHHHHHHGGGC--HHHHHHHHHHHHHHHHHHHHHHHTSTTEEEC-CCSSSEEEEEESC
T ss_pred ----hHHHHhh--cCCccccccccccccccccc--cchhHHHHHHHHHHHHHHHHHHhhcCCcEEC-CCCCEEEEEECCC
Confidence 3444433 23355788999999998875 3567888899999999999999998 66654 5789999999984
Q ss_pred CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 379 RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 379 ~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
++.++...++ ++||.++||..|+..+++++||++. +++++++++++|+++|
T Consensus 305 -~~~~~~~~L~-~~gv~vr~~~~f~~~~~~~iRis~~-~~~e~~~li~aL~~il 355 (355)
T d1lc5a_ 305 -EDIDLQRRLL-TQRILIRSCANYPGLDSRYYRVAIR-SAAQNERLLAALRNVL 355 (355)
T ss_dssp -TTCCHHHHHH-TTTEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHC
T ss_pred -CHHHHHHHHH-HCCcEEEeCccCCCCCCCEEEEEeC-CHHHHHHHHHHHHHhC
Confidence 4456666665 4599999999998777899999984 7899999999999875
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=5.4e-45 Score=341.84 Aligned_cols=318 Identities=18% Similarity=0.253 Sum_probs=256.3
Q ss_pred CCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHH
Q 045431 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDIS 140 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~ 140 (433)
++.++|+|++|++++++|+.+.+++.+.+.. ...+|.+..|.++||+++|+|+.+. ++++|+|++|+|+++++.
T Consensus 17 ~~~d~~~l~~~enp~~~p~~i~~~~~~~~~~-----~~~~~yp~~g~~~Lr~aia~~~~~~-~v~~d~I~it~G~~~~l~ 90 (334)
T d2f8ja1 17 EKRDKTYLALNENPFPFPEDLVDEVFRRLNS-----DALRIYYDSPDEELIEKILSYLDTD-FLSKNNVSVGNGADEIIY 90 (334)
T ss_dssp CCCCSEECSSCCCSSCCCHHHHHHHHHHCCT-----TGGGSCCCSSCHHHHHHHHHHHTCS-SCCGGGEEEEEHHHHHHH
T ss_pred cCCCceEEECCCCCCCCCHHHHHHHHHHhhc-----chhcCCCCCCcHHHHHHHHHHhccc-CCCcceEEecCcchhHHH
Confidence 4567999999999999999999999988863 3345557789999999999999753 368999999999999988
Q ss_pred HHHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCcccc
Q 045431 141 RLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGA 220 (433)
Q Consensus 141 ~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~ 220 (433)
++. ++||+|++++|+|+.+...++.+| .+++.++.+.+..+.. ...+++++++++|||||||.
T Consensus 91 ~l~---~~~d~v~i~~P~y~~~~~~~~~~g------------~~~v~v~~~~~~~~~~--~~~~~~~~l~l~nP~NPtG~ 153 (334)
T d2f8ja1 91 VMM---LMFDRSVFFPPTYSCYRIFAKAVG------------AKFLEVPLTKDLRIPE--VNVGEGDVVFIPNPNNPTGH 153 (334)
T ss_dssp HHH---HHSSEEEECSSCCHHHHHHHHHHT------------CCEEECCCCTTSCCCC--CCCCTTEEEEEESSCTTTCC
T ss_pred HHh---hhccccccccccccccccchhccC------------Cccccccccccccccc--cccccceEEEecccccccce
Confidence 753 457999999999999999999999 4888999876544322 23468899999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCC
Q 045431 221 AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDG 300 (433)
Q Consensus 221 ~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~ 300 (433)
+++.+++.++ .++++++|+||+|.++......... ...+++++++||||+++++|+|+||+++++.++
T Consensus 154 ~~s~~~l~~~----~~~~~~ii~Dd~~~~~~~~~~~~~~----~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~i---- 221 (334)
T d2f8ja1 154 VFEREEIERI----LKTGAFVALDEAYYEFHGESYVDFL----KKYENLAVIRTFSKAFSLAAQRVGYVVASEKFI---- 221 (334)
T ss_dssp CCCHHHHHHH----HTTTCEEEEECTTGGGTCCCCGGGG----GTCSSEEEEEESTTTSSCTTTCEEEEEECHHHH----
T ss_pred eecHHHhhcc----ccceeEEeecccchhhccccccccc----ccCceEEEEecCccccchhhhhhhhcccchHHH----
Confidence 9997666553 4689999999999876544322211 135789999999999999999999999999885
Q ss_pred cchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCCCC
Q 045431 301 FPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRS 380 (433)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~ 380 (433)
..+..... ....+.++|.++.+++.+ .+++++.++.++++++.+.+.|+++|+++.++ .|.|+|+.++..+
T Consensus 222 ----~~l~~~~~--~~~~s~~~~~~a~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~-~g~f~~~~~~~~~ 292 (334)
T d2f8ja1 222 ----DAYNRVRL--PFNVSYVSQMFAKVALDH--REIFEERTKFIVEERERMKSALREMGYRITDS-RGNFVFVFMEKEE 292 (334)
T ss_dssp ----HHHHHHSC--TTCSCHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHHTCEECCC-CSSEEEEECCHHH
T ss_pred ----HHHHHhhc--ccccchhhhhhccccccc--ccchhhHHHHHHHHHHHHHHHHHHCCCeECCC-CceEEEEECCCCC
Confidence 66665543 345788999988888764 46788889999999999999999999998876 5668999998656
Q ss_pred hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHh
Q 045431 381 SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHL 431 (433)
Q Consensus 381 ~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~ 431 (433)
..++.+.|++ +||.+++. ++++|||+ .+.+|+++++++|+++
T Consensus 293 ~~~~~~~L~~-~GI~vr~~-------~~~vRis~-g~~ee~~~l~~~l~~f 334 (334)
T d2f8ja1 293 KERLLEHLRT-KNVAVRSF-------REGVRITI-GKREENDMILRELEVF 334 (334)
T ss_dssp HHHHHHHHHH-TTEECEEE-------TTEEEEEC-CCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH-CCCEECCC-------CCeEEEEc-CCHHHHHHHHHHHhcC
Confidence 6677777655 59999753 47999998 4677889999998863
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=100.00 E-value=3.1e-45 Score=352.29 Aligned_cols=341 Identities=15% Similarity=0.144 Sum_probs=263.2
Q ss_pred CCceEEecCCC---CC--CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhcc--CCCCCCcEEEcCC
Q 045431 62 DAEVISLGIGD---TT--EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKD--LGIEEGDIFVSDG 134 (433)
Q Consensus 62 ~~~~i~l~~g~---~~--~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~--~~~~~~~i~~~~G 134 (433)
.++.|||+.|. ++ .+.++.+.++..+.+.+ ...++|++..|.++||+++++++.+. ...++++|+++.|
T Consensus 27 ~~~~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~----~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~ 102 (401)
T d7aata_ 27 NSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAK----KMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQG 102 (401)
T ss_dssp CTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHT----TCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEE
T ss_pred CCCcEEccCCCCcCCCCCCCCCHHHHHHHHHHhhC----CCCCCCCCCCCCHHHHHHHHHHHhccCCcccCcCceEEecc
Confidence 44679999994 22 23457888887777764 33458999999999999999999863 3346778877655
Q ss_pred hH-----HHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCC-------
Q 045431 135 AK-----CDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS------- 201 (433)
Q Consensus 135 ~~-----~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 201 (433)
+. .++.+ +..+++|||.|++++|+|+.|...++..| .+++.++..+++++..+.+
T Consensus 103 ~~~~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (401)
T d7aata_ 103 ISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAG------------LQLQAYRYYDPKTCSLDFTGAMEDIS 170 (401)
T ss_dssp EHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTT------------CEEEEEECEETTTTEECHHHHHHHHT
T ss_pred chHHHHHHHHHHhhHhhcCCCceEEEecCCCcchhhHHHHcC------------CeEEEEeccccccccccHHHHHHHHh
Confidence 44 34554 46788999999999999999999999999 5888898876666555432
Q ss_pred -CCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCC-c--ccccCCCCcceEEEecccc
Q 045431 202 -TVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPR-S--IFEIPGAKEVAIETSSFSK 277 (433)
Q Consensus 202 -~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~-~--~~~~~~~~~~vi~i~S~sK 277 (433)
..++++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.+++... + ........++++++.|+||
T Consensus 171 ~~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk 250 (401)
T d7aata_ 171 KIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAK 250 (401)
T ss_dssp TSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTT
T ss_pred cCCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEeccc
Confidence 13678888999999999999999999999999999999999999999999876421 1 1122223456788999999
Q ss_pred cccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-----hHHHHHHHHHHHHHHHH
Q 045431 278 YAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-----KAVHEVIGFYKENTDII 352 (433)
Q Consensus 278 ~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~l 352 (433)
.++++|+|+||++++...+.. ..++...+..........++.+.|.++..++.+... .+++..+++++++++.+
T Consensus 251 ~~~~~G~RiG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l 329 (401)
T d7aata_ 251 NMGLYGERAGAFTVICRDAEE-AKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQL 329 (401)
T ss_dssp TSCCGGGCEEEEEEECSSHHH-HHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeeccccceeecchHHHHH-HHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888511 000011112222334456788889888888775432 45778888999999999
Q ss_pred HHHHhhcC----CeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec-cChhHHHHHHHH
Q 045431 353 VETFNSLG----FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF-GHRGNVLEACKR 427 (433)
Q Consensus 353 ~~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~-~~~~~l~~~l~~ 427 (433)
.+.|++++ +.+..+++|+|+|+.++ .+++.+|++++||.+.|| +|||++ .++++|+.+.++
T Consensus 330 ~~~L~~~~~~~~~~~~~~~~G~F~~~~ls----~e~~~~L~~e~gV~~~pg----------~Ris~a~~~~~~i~~la~a 395 (401)
T d7aata_ 330 VSNLKKEGSSHNWQHITDQIGMFCFTGLK----PEQVERLTKEFSIYMTKD----------GRISVAGVASSNVGYLAHA 395 (401)
T ss_dssp HHHHHHTTCCSCCHHHHHCCSSEEECCCC----HHHHHHHHHHHCEECCTT----------CEEEGGGCCTTTHHHHHHH
T ss_pred HHHHHHhCCCCCcceECCCCeEEEecCCC----HHHHHHHHHhCCEEECCC----------cEEEeccCCHHHHHHHHHH
Confidence 99999985 45567889999998764 467788999999999987 499986 589999999999
Q ss_pred HHHhhC
Q 045431 428 FKHLYK 433 (433)
Q Consensus 428 l~~~l~ 433 (433)
|.++++
T Consensus 396 i~~v~k 401 (401)
T d7aata_ 396 IHQVTK 401 (401)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 999875
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.9e-43 Score=330.32 Aligned_cols=319 Identities=18% Similarity=0.291 Sum_probs=252.8
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR 141 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~ 141 (433)
.+..|.|+.+++++++++.+.+ .....| |..+..+||+++|+++ ++++|+|++|+|+++++.+
T Consensus 26 ~~~~i~L~~ne~p~~~~~~~~~------------~~l~rY-Pd~~~~~Lr~~ia~~~----gv~pe~I~it~Gs~eai~~ 88 (354)
T d1fg7a_ 26 GNGDVWLNANEYPTAVEFQLTQ------------QTLNRY-PECQPKAVIENYAQYA----GVKPEQVLVSRGADEGIEL 88 (354)
T ss_dssp TTCSEECSSCCCSSCCCCCCCC------------CCTTSC-CCSSCHHHHHHHHHHH----TSCGGGEEEESHHHHHHHH
T ss_pred CCCCEEeeCCCCCCCCCHHHHH------------HHHhcC-CCCcHHHHHHHHHHHh----CCChHHeeeccCchHHHHH
Confidence 3457999999987766543221 334568 5667789999999998 8999999999999999997
Q ss_pred -HHHhcCCCC-EEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCC----CCCCccEEEEcCCC
Q 045431 142 -LQIVFGSNV-TMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS----TVARTDIIFFCSPN 215 (433)
Q Consensus 142 -l~~l~~~gd-~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~l~~p~ 215 (433)
+..+++||| .|+++.|+|+.+....+..| .+++.++.++ ++..+++ ...++++|+++|||
T Consensus 89 ~~~~~~~pgd~~Vl~~~P~y~~~~~~~~~~g------------~~v~~~~~~~--~~~~d~~~l~~~~~~~~~v~~~~pn 154 (354)
T d1fg7a_ 89 LIRAFCEPGKDAILYCPPTYGMYSVSAETIG------------VECRTVPTLD--NWQLDLQGISDKLDGVKVVYVCSPN 154 (354)
T ss_dssp HHHHHCCTTTCEEEECSSSCTHHHHHHHHHT------------CEEEECCCCT--TSCCCHHHHHTSCTTEEEEEEESSC
T ss_pred HHHHhhccccccccccccccccchhhhhccC------------ceeecccccc--ccccchhhhhhcccccceeeccCCC
Confidence 577889998 58889999999999999999 4777777754 3444432 24688999999999
Q ss_pred CccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccc
Q 045431 216 NPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKEL 295 (433)
Q Consensus 216 nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~ 295 (433)
||||.+++.++++.+.+.++ ++.++|+||+|.+|..+...... ....+++++++||||.+|++|+|+||+++++++
T Consensus 155 NPtG~~~~~~~~~~~~~~~~-~~~~~iidd~~~~f~~~~~~~~~---~~~~~~~iv~~S~SK~~~laGlRiGy~i~~~~~ 230 (354)
T d1fg7a_ 155 NPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGW---LAEYPHLAILRTLSKAFALAGLRCGFTLANEEV 230 (354)
T ss_dssp TTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGG---TTTCTTEEEEEESSSTTCCGGGCCEEEEECHHH
T ss_pred ccceeEeeeccccccccccc-ccccccccccchhhccccccchh---hcccccceEEeCCccccCCCccccccccccchh
Confidence 99999999999999888776 57888889988888765433222 223568899999999999999999999999988
Q ss_pred cccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcC-CeeecCCCccEEEE
Q 045431 296 LFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLG-FKVYGGKNAPYVWV 374 (433)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~~~g~~~~~ 374 (433)
+ +.+.+.. ..+..+.+.|.++..++.+....+.....+++.++++.+.+.+.+.+ +....|.+++|+|+
T Consensus 231 i--------~~l~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~p~~~~f~~~ 300 (354)
T d1fg7a_ 231 I--------NLLMKVI--APYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILA 300 (354)
T ss_dssp H--------HHHHHHS--CSSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEE
T ss_pred h--------hhhhhhc--CccchhhHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHhCCCcceeCCCCceEEEE
Confidence 5 6665543 33456778888778777765555667777888999999999999984 45566789999999
Q ss_pred ECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHH
Q 045431 375 QFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKH 430 (433)
Q Consensus 375 ~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~ 430 (433)
+++ ++.++++.|+++ ||.+++++.|. ..++++||++ .+++++++++++|+.
T Consensus 301 ~~~--~~~~~~~~L~~~-gIlvr~~~~~~-~~~~~lRisi-gt~ee~~~~l~aLka 351 (354)
T d1fg7a_ 301 RFK--ASSAVFKSLWDQ-GIILRDQNKQP-SLSGCLRITV-GTREESQRVIDALRA 351 (354)
T ss_dssp EET--THHHHHHHHHHT-TEECEECTTST-TCTTEEEEEC-CCHHHHHHHHHHHHT
T ss_pred eCC--CHHHHHHHHHHC-CcEEecCCCCC-CCCCEEEEEe-CCHHHHHHHHHHHhh
Confidence 997 466777777655 99999988774 3468999998 578889999999874
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1e-44 Score=348.13 Aligned_cols=340 Identities=19% Similarity=0.171 Sum_probs=258.9
Q ss_pred CceEEecCCC---CC--CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCCh
Q 045431 63 AEVISLGIGD---TT--EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGA 135 (433)
Q Consensus 63 ~~~i~l~~g~---~~--~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~ 135 (433)
++.|||+.|. ++ .+.++.+.+|........ ...+.|++..|.++||+++++|+.+ +..+++++|+++.|+
T Consensus 26 ~~kInL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~---~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~ 102 (397)
T d3tata_ 26 SDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQP---HGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTL 102 (397)
T ss_dssp SSCEECSCCSCCCTTSSCCCCHHHHHHHHHHTTSC---CSSBCCCCTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBS
T ss_pred CCcEEccCCCCcCCCCCCCCcHHHHHHHHHHHhCc---ccCCCCCCcccCHHHHHHHHHHHhhccCCcCCcCcEEEecCc
Confidence 3459999994 33 334577777765544321 4456899999999999999999986 344578899988877
Q ss_pred HHH----HHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCC--------C
Q 045431 136 KCD----ISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS--------T 202 (433)
Q Consensus 136 ~~a----l~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 202 (433)
+++ +.+ +..++.|||.|++++|+|+.|...++.+| .+++.++.+.++++..+.+ .
T Consensus 103 ~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~~~~G------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 170 (397)
T d3tata_ 103 GGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAG------------FEVSTYPWYDEATNGVRFNDLLATLKTL 170 (397)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCCEECSSCCTTHHHHHHTTT------------CCCEECCCCCTTTSSCCHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhcCCCCcceecccCccccHHHHHHcC------------CEEEEEecchhhccccchHHHHHHhhhc
Confidence 764 333 35567999999999999999999999999 4788999887776655532 1
Q ss_pred CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCcccccCCCCcceEEEeccccccc
Q 045431 203 VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN--PRSIFEIPGAKEVAIETSSFSKYAG 280 (433)
Q Consensus 203 ~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~vi~i~S~sK~~~ 280 (433)
.+++++++++|||||||.++|.+++++|+++|++|+++||+||+|.++.+++. +.++.......++++++.||||.++
T Consensus 171 ~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~ 250 (397)
T d3tata_ 171 PARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFS 250 (397)
T ss_dssp CSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHT
T ss_pred ccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCccccc
Confidence 35677888889999999999999999999999999999999999999988753 2223333334567899999999999
Q ss_pred ccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-----hHHHHHHHHHHHHHHHHHHH
Q 045431 281 FTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-----KAVHEVIGFYKENTDIIVET 355 (433)
Q Consensus 281 ~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~l~~~ 355 (433)
++|+|+||++++...+.. ..++..............++...|.++..++.+... ++++.++++++++++.+.+.
T Consensus 251 ~~G~RiG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~ 329 (397)
T d3tata_ 251 LYGERVGGLSVMCEDAEA-AGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKV 329 (397)
T ss_dssp BTTTCCBCCEEECSSTTH-HHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCccccccccchhHHHH-HHHHHHHHHHHhhcccccccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887521 000011111122333445677888877777764332 45667778888888999998
Q ss_pred HhhcC----CeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc-ChhHHHHHHHHHHH
Q 045431 356 FNSLG----FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG-HRGNVLEACKRFKH 430 (433)
Q Consensus 356 l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~l~~~l~~l~~ 430 (433)
|...+ +.+..+.+|+|+|+.++ .++.++|++++||.+.||. ||+++. ++++++.+.++|++
T Consensus 330 L~~~~~~~~~~~~~~~~G~F~~~~ls----~e~~~~L~~e~~V~l~~g~----------Ri~~a~~~~~~i~~~~~ai~~ 395 (397)
T d3tata_ 330 LSTEMPERNFDYLLNQRGMFSYTGLS----AAQVDRLREEFGVYLIASG----------RMCVAGLNTANVQRVAKAFAA 395 (397)
T ss_dssp TTTTCTTSCTTHHHHCCSSBCCCCCC----HHHHHHHTTTTCEECCSSS----------CCBTTSCCTTTHHHHHHHHHH
T ss_pred HHHhCCCCceEEEcCCCceEEecCcC----HHHHHHHHHhCCEEeCCCC----------EEEeccCCHHHHHHHHHHHHH
Confidence 88763 66677889999998874 4678889999999999863 899754 89999999999988
Q ss_pred hh
Q 045431 431 LY 432 (433)
Q Consensus 431 ~l 432 (433)
++
T Consensus 396 v~ 397 (397)
T d3tata_ 396 VM 397 (397)
T ss_dssp HC
T ss_pred hC
Confidence 74
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.9e-43 Score=334.28 Aligned_cols=332 Identities=17% Similarity=0.206 Sum_probs=255.0
Q ss_pred CceEEecCCC---CC--CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCC--CCCCcE--EEcC
Q 045431 63 AEVISLGIGD---TT--EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLG--IEEGDI--FVSD 133 (433)
Q Consensus 63 ~~~i~l~~g~---~~--~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~--~~~~~i--~~~~ 133 (433)
++.|||+.|. ++ .+.++.+.+++.+.+.+ ...++|++..|.++||+++++|+.+..+ ..++.+ +++.
T Consensus 26 ~~kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~----~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~ 101 (396)
T d2q7wa1 26 PGKINLGIGVYKDETGKTPVLTSVKKAEQYLLEN----ETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTP 101 (396)
T ss_dssp --CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHH----CCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEES
T ss_pred CCcEEeeCCCccCCCCCCCCCHHHHHHHHHHhhC----CCCCCCCCCcCCHHHHHHHHHHHHhhcCCcccccceeeeccc
Confidence 3469999993 32 34568888888887765 3456899999999999999999986333 334433 4566
Q ss_pred ChHHHHHH---HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCC--------C
Q 045431 134 GAKCDISR---LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS--------T 202 (433)
Q Consensus 134 G~~~al~~---l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 202 (433)
|+..++.+ +...+.+||.|++++|+|+.|...+..+| .+++.++...++++..+.. .
T Consensus 102 ~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (396)
T d2q7wa1 102 GGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAG------------LEVREYAYYDAENHTLDFDALINSLNEA 169 (396)
T ss_dssp HHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTT------------CEEEEEECEETTTTEECHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHhhcccceEEEEecCCCccchHHHHHcC------------CeeEecccccccccccccchHHHHHHHh
Confidence 66666554 24557999999999999999999999999 4788888876655443321 2
Q ss_pred CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCcccccCCCCcceEEEeccccccc
Q 045431 203 VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN--PRSIFEIPGAKEVAIETSSFSKYAG 280 (433)
Q Consensus 203 ~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~vi~i~S~sK~~~ 280 (433)
..+++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.+++. ..+........++++++.|+||.++
T Consensus 170 ~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~ 249 (396)
T d2q7wa1 170 QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFG 249 (396)
T ss_dssp CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTT
T ss_pred ccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhccccccccccccccc
Confidence 35677888889999999999999999999999999999999999999988753 2222222222456788999999999
Q ss_pred ccccceeeeeccccccccCCcchhHHHHH-------HHhhccCCCcHHHHHHHHHhcCcCC-----hhHHHHHHHHHHHH
Q 045431 281 FTGVRLGWTVIPKELLFSDGFPVAKDFNR-------IVCTCFNGASNISQAGGLACLSPEG-----FKAVHEVIGFYKEN 348 (433)
Q Consensus 281 ~~G~r~G~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~~~~~~~ 348 (433)
++|+|+||++++...+ +.... .......+++...|.++..++.+.. .++++.++++++++
T Consensus 250 ~~G~R~G~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (396)
T d2q7wa1 250 LYNERVGACTLVAADS--------ETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRM 321 (396)
T ss_dssp CGGGCCEEEEEECSSH--------HHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHH
T ss_pred ccCCCccccccchhHH--------HHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999998875 22222 1233445678888888887777432 25688889999999
Q ss_pred HHHHHHHHhhcC----CeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc-ChhHHHH
Q 045431 349 TDIIVETFNSLG----FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG-HRGNVLE 423 (433)
Q Consensus 349 ~~~l~~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~l~~ 423 (433)
++.+.+.|+++| +.+..+++|+|.|+.++ .++..+|++++||.+.||+ ||+++. ++++++.
T Consensus 322 r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~l~----~e~~~~L~~e~gV~~~~g~----------Ri~~a~l~~~~i~~ 387 (396)
T d2q7wa1 322 RQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLT----KEQVLRLREEFGVYAVASG----------RVNVAGMTPDNMAP 387 (396)
T ss_dssp HHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCC----HHHHHHHHHHHCEECCTTC----------EEEGGGCCTTTHHH
T ss_pred HHHHHHHHHHhCCCCCcceecCCCeEEEeeCCC----HHHHHHHHHhCCEEECCCC----------EEEecCCCHHHHHH
Confidence 999999999985 44556779999998774 4678889999999998863 999865 8999999
Q ss_pred HHHHHHHhh
Q 045431 424 ACKRFKHLY 432 (433)
Q Consensus 424 ~l~~l~~~l 432 (433)
+.++|++++
T Consensus 388 ~~~ai~~v~ 396 (396)
T d2q7wa1 388 LCEAIVAVL 396 (396)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 999998875
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=100.00 E-value=2.5e-42 Score=332.67 Aligned_cols=342 Identities=16% Similarity=0.152 Sum_probs=253.1
Q ss_pred CceEEecCCC---CCC--CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCC--CCCCcEEEc--C
Q 045431 63 AEVISLGIGD---TTE--PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLG--IEEGDIFVS--D 133 (433)
Q Consensus 63 ~~~i~l~~g~---~~~--~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~--~~~~~i~~~--~ 133 (433)
++.|||+.|. ++. +.++.+.++........ ...++|++..|.++||+++++++.+..+ ..++.++++ .
T Consensus 29 ~~kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~---~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~ 105 (412)
T d1yaaa_ 29 ATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDS---SYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSL 105 (412)
T ss_dssp SSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCT---TCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEE
T ss_pred CCcEEeecCCCcCCCCCCCCcHHHHHHHHHHHhCc---ccCCCCCCCCCCHHHHHHHHHHHhcccCccccccceeEEecc
Confidence 4579999994 332 34477777644433221 4456899999999999999999986333 233333332 3
Q ss_pred ChHHHHHH---HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC--------
Q 045431 134 GAKCDISR---LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-------- 202 (433)
Q Consensus 134 G~~~al~~---l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 202 (433)
|+..++.+ +...+.|||.|++++|+|+.|...+...| ..++.++...++++..+.+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~y~~~~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (412)
T d1yaaa_ 106 SGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQG------------LKTATYPYWANETKSLDLNGFLNAIQKA 173 (412)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTT------------CCEEEEECEETTTTEECHHHHHHHHHHS
T ss_pred cchhHHHHHHHHHhccCCCCEEecccccCchhHHHHHHcC------------CceecccccccccccccchhhhcccccC
Confidence 33444332 24457899999999999999999999999 47788887666555554321
Q ss_pred CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCC-Cc-----ccccCCCCcceEEEeccc
Q 045431 203 VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNP-RS-----IFEIPGAKEVAIETSSFS 276 (433)
Q Consensus 203 ~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~-~~-----~~~~~~~~~~vi~i~S~s 276 (433)
.++++++++++||||||.++|.+++++|+++|++++++||+||+|.++.+++.. .+ ........++++++.|+|
T Consensus 174 ~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~S 253 (412)
T d1yaaa_ 174 PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFA 253 (412)
T ss_dssp CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECT
T ss_pred CCceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEecC
Confidence 245667888899999999999999999999999999999999999999987631 11 122223457889999999
Q ss_pred ccccccccceeeeeccccccccCC---cchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-----hHHHHHHHHHHHH
Q 045431 277 KYAGFTGVRLGWTVIPKELLFSDG---FPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-----KAVHEVIGFYKEN 348 (433)
Q Consensus 277 K~~~~~G~r~G~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-----~~~~~~~~~~~~~ 348 (433)
|.++++|+|+||++++.+.+.... ..+.............+++.+.|.++..++.+... ++++.+++.++++
T Consensus 254 K~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 333 (412)
T d1yaaa_ 254 KNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKM 333 (412)
T ss_dssp TTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccCcCceEEEEEchhhhhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988752100 00001111222345566889999998888876432 4678889999999
Q ss_pred HHHHHHHHhhcC----CeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec-cChhHHHH
Q 045431 349 TDIIVETFNSLG----FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF-GHRGNVLE 423 (433)
Q Consensus 349 ~~~l~~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~-~~~~~l~~ 423 (433)
++.+.+.|+++| +.++.+++|+|+|+.++ .+++++|++++||.+.|| .||+++ .++++++.
T Consensus 334 r~~l~~~L~~~g~~~~~~~~~~~gG~F~~~~ls----~e~~~~L~~e~~V~~~~g----------~Ris~~g~~~~~i~~ 399 (412)
T d1yaaa_ 334 RHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLT----PQMVKRLEETHAVYLVAS----------GRASIAGLNQGNVEY 399 (412)
T ss_dssp HHHHHHHHHHHTCSSCCTHHHHCCSSEEECCCC----HHHHHHHHHHHCEECCTT----------SEEEGGGCCTTTHHH
T ss_pred HHHHHHHHHHhCCCCCCceeCCCceEEEecCcC----HHHHHHHHHhCCEEECCC----------CEEEeccCCHHHHHH
Confidence 999999999875 45667889999998764 467888989999999886 399986 58888998
Q ss_pred HHHHHHHhhC
Q 045431 424 ACKRFKHLYK 433 (433)
Q Consensus 424 ~l~~l~~~l~ 433 (433)
+.++|+++++
T Consensus 400 l~~ai~~v~k 409 (412)
T d1yaaa_ 400 VAKAIDEVVR 409 (412)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888888753
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=100.00 E-value=1.9e-42 Score=334.00 Aligned_cols=343 Identities=15% Similarity=0.126 Sum_probs=248.7
Q ss_pred CCCceEEecCCC---CC--CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEE--E
Q 045431 61 PDAEVISLGIGD---TT--EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIF--V 131 (433)
Q Consensus 61 ~~~~~i~l~~g~---~~--~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~--~ 131 (433)
+.++.|||+.|. ++ .+.++.+.++........ ...++|++..|.++||+++++|+.+ +..++++++. .
T Consensus 28 ~~~~~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~---~~~~~Y~p~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~ 104 (412)
T d1ajsa_ 28 PDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNS---SLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQ 104 (412)
T ss_dssp CCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCT---TCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEE
T ss_pred CCCCcEEeeCCCCcCCCCCCCCcHHHHHHHHHHHhCC---CcCCCCCCCCCCHHHHHHHHHHHhccCCcccccccceeec
Confidence 344679999993 32 334567776655544321 3456899999999999999999976 3334556554 4
Q ss_pred cCChHHHHHH-H-------HHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCC--
Q 045431 132 SDGAKCDISR-L-------QIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS-- 201 (433)
Q Consensus 132 ~~G~~~al~~-l-------~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 201 (433)
|.|.+.++.. . ..+++|||.|++++|+|+.|...++.+|.+ .+...+..+++.+..+++
T Consensus 105 ~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~G~~-----------~v~~~~~~~~~~~~~d~~~~ 173 (412)
T d1ajsa_ 105 SLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFK-----------DIRSYRYWDTEKRGLDLQGF 173 (412)
T ss_dssp EEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCS-----------CEEEEECEETTTTEECHHHH
T ss_pred ccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchhhHHHHHHcCCe-----------EEEeecccccccccccHHHH
Confidence 5555544432 1 123699999999999999999999999953 122233333333333321
Q ss_pred ------CCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCC---CcccccCCCCcceEEE
Q 045431 202 ------TVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNP---RSIFEIPGAKEVAIET 272 (433)
Q Consensus 202 ------~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~---~~~~~~~~~~~~vi~i 272 (433)
..++++++++++||||||.++|.+++++|+++|++|+++||+||+|.++.+++.. .+........++++++
T Consensus 174 ~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (412)
T d1ajsa_ 174 LSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCA 253 (412)
T ss_dssp HHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEE
T ss_pred HHHHHhccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhccccccc
Confidence 1367788888899999999999999999999999999999999999999887631 1222222234678889
Q ss_pred ecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-----hHHHHHHHHHHH
Q 045431 273 SSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-----KAVHEVIGFYKE 347 (433)
Q Consensus 273 ~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-----~~~~~~~~~~~~ 347 (433)
.|+||.++++|+|+||++++...+.. ..++...+..........++.+.|.++..++.+... ++++.+++++++
T Consensus 254 ~s~sk~~~~~G~R~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 332 (412)
T d1ajsa_ 254 QSFSKNFGLYNERVGNLTVVAKEPDS-ILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILS 332 (412)
T ss_dssp EECTTTSCCGGGCEEEEEEECSSHHH-HHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCCCccccccchhHHHH-HHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999877411 001111222223344556788888888777764322 467888999999
Q ss_pred HHHHHHHHHhhcC----CeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec-cChhHHH
Q 045431 348 NTDIIVETFNSLG----FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF-GHRGNVL 422 (433)
Q Consensus 348 ~~~~l~~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~-~~~~~l~ 422 (433)
+++.+.+.|++++ +.++.+.+|+|.|+.+. .+++.+|++++||.+.||. ||+++ .++++++
T Consensus 333 ~r~~l~~~L~~~~~~~~~~~i~~~~G~F~~~~ls----~~~v~~L~~e~gV~~vpg~----------Ri~~ag~~~~~i~ 398 (412)
T d1ajsa_ 333 MRSELRARLEALKTPGTWNHITDQIGMFSFTGLN----PKQVEYLINQKHIYLLPSG----------RINMCGLTTKNLD 398 (412)
T ss_dssp HHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCC----HHHHHHHHHTTCEECCTTS----------EEEGGGCCTTTHH
T ss_pred HHHHHHHHHHHhCCCCCeeeecCCCeEEEecCCC----HHHHHHHHHhCCEEEeCCC----------eEEeccCCHHHHH
Confidence 9999999999985 44566789999997663 4667888899999999873 99986 5899999
Q ss_pred HHHHHHHHhh
Q 045431 423 EACKRFKHLY 432 (433)
Q Consensus 423 ~~l~~l~~~l 432 (433)
.+.++|++++
T Consensus 399 ~~a~aI~~av 408 (412)
T d1ajsa_ 399 YVATSIHEAV 408 (412)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999876
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=4.6e-41 Score=322.54 Aligned_cols=339 Identities=15% Similarity=0.127 Sum_probs=249.0
Q ss_pred CCceEEecCCCC---C--CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc-cCCCCCCcEEEcCCh
Q 045431 62 DAEVISLGIGDT---T--EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK-DLGIEEGDIFVSDGA 135 (433)
Q Consensus 62 ~~~~i~l~~g~~---~--~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~-~~~~~~~~i~~~~G~ 135 (433)
.++.|||+.|.+ + .+.++.+.+++.+.+.. ...++|++..|.++||+++++++.+ +........+++.|+
T Consensus 25 ~~~~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~----~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~ 100 (394)
T d2ay1a_ 25 RQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLET----ETTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGG 100 (394)
T ss_dssp CTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHH----CCCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHH
T ss_pred CCCCEEccCCCccCCCCCCCCCHHHHHHHHHHhhC----CCCCCCCCCCCCHHHHHHHHHHHhccccccccccceeccCc
Confidence 345799999952 2 34568889888887765 3345899999999999999999975 322223334444444
Q ss_pred HHH--HHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCC--------CCC
Q 045431 136 KCD--ISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS--------TVA 204 (433)
Q Consensus 136 ~~a--l~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 204 (433)
+++ +.+ +..++.+||.|++++|+|+.|...++.+| ..++.++...++.+..+.. ..+
T Consensus 101 ~~~~~l~~~~~~~~~~gd~V~~p~p~~~~y~~~~~~~g------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (394)
T d2ay1a_ 101 TGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMG------------LPVQTYRYFDAETRGVDFEGMKADLAAAKK 168 (394)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHT------------CCEEEEECEETTTTEECHHHHHHHHHTCCT
T ss_pred hHHHHHHHHHhhhcCCceEEEEecccccchHHHHHHcC------------CEEEEecccchhcccccchhHHHHHhhccc
Confidence 433 444 46677999999999999999999999999 4777777765544433311 134
Q ss_pred CccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCC-Cccccc-CCCCcceEEEeccccccccc
Q 045431 205 RTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNP-RSIFEI-PGAKEVAIETSSFSKYAGFT 282 (433)
Q Consensus 205 ~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~-~~~~~~-~~~~~~vi~i~S~sK~~~~~ 282 (433)
+++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.+++.. .+.... .....+++++.|+||.++++
T Consensus 169 ~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~ 248 (394)
T d2ay1a_ 169 GDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIY 248 (394)
T ss_dssp TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCG
T ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhcccccccccccccccCC
Confidence 5666677799999999999999999999999999999999999999887531 122111 11134578899999999999
Q ss_pred ccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-----hHHHHHHHHHHHHHHHHHHHHh
Q 045431 283 GVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-----KAVHEVIGFYKENTDIIVETFN 357 (433)
Q Consensus 283 G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~l~~~l~ 357 (433)
|+|+||++++...+.. ..++...+..........++...|.++...+.+... ++++.++++++++++.+.+.|+
T Consensus 249 G~R~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~ 327 (394)
T d2ay1a_ 249 RERTGCLLALCADAAT-RELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELR 327 (394)
T ss_dssp GGCEEEEEEECSSHHH-HHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhchhHHHH-HHHhhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887511 000011112222333445667777777766664332 5678888999999999999998
Q ss_pred hcC----CeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec-cChhHHHHHHHHHHHh
Q 045431 358 SLG----FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF-GHRGNVLEACKRFKHL 431 (433)
Q Consensus 358 ~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~-~~~~~l~~~l~~l~~~ 431 (433)
+++ +.+..+++|+|+|+.++ .++.++|++++||.+.|| .||+++ .++++++.+.++|.++
T Consensus 328 ~~~~~~~~~~~~~~~G~F~~~~ls----~~~~~~L~~~~~V~~~~g----------~Ri~~a~l~~~~i~~l~~ai~~v 392 (394)
T d2ay1a_ 328 DLSGSDRFGFVAEHRGMFSRLGAT----PEQVKRIKEEFGIYMVGD----------SRINIAGLNDNTIPILARAIIEV 392 (394)
T ss_dssp HHHTSSTTTHHHHCCSSEEECCCC----HHHHHHHHHHHCEECCTT----------CEEEGGGCCTTTHHHHHHHHHHH
T ss_pred HhCCCCceeeECCCceeEEecCcC----HHHHHHHHHhCCEEecCC----------CEEEecCCCHHHHHHHHHHHHHh
Confidence 873 56677889999998774 467788888999999886 399985 4899999999998875
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=100.00 E-value=3.7e-39 Score=307.94 Aligned_cols=328 Identities=16% Similarity=0.151 Sum_probs=237.1
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCC----CCHHHHHHHHHHHhc--cCCCCCCcEEEcCChH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQ----GEKPLRAAIASTFYK--DLGIEEGDIFVSDGAK 136 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~----g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~ 136 (433)
+.++|++.|+|.+..|--...+...++...+ -..+.|.... -.++|+++|+++... +...+..+|++++|++
T Consensus 56 ~~~~~~~~gdp~~~~~~w~~~~~~~~~~~~~--~~~~sy~~~~~~~~~~~~L~~~i~~lh~~~gna~t~~~~IvvG~Gst 133 (425)
T d2hoxa1 56 GCSADVASGDGLFLEEYWKQHKEASAVLVSP--WHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVT 133 (425)
T ss_dssp TCCEECCSCCCGGGHHHHTTSHHHHCEEECT--TTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHH
T ss_pred CceeeCCCCCCCCCCHHHHhCcccceEEeec--ccccceecCCccccCCHHHHHHHHHHHhhhCCCCCCCCEEEECCCHH
Confidence 4689999999975433333223333222111 1223443332 248999999997654 3334556799999999
Q ss_pred HHHHH-HHHh--------cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCCCCcc
Q 045431 137 CDISR-LQIV--------FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTD 207 (433)
Q Consensus 137 ~al~~-l~~l--------~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (433)
++|.+ +.++ +.|||+|+++.|+|+.|....+.++. ....+..|.+ .+.. ...++++
T Consensus 134 eli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~~~------------~~~~~~~D~~-~~~~--~~~~~~~ 198 (425)
T d2hoxa1 134 QLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDK------------KGYVWAGNAA-NYVN--VSNPEQY 198 (425)
T ss_dssp HHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCB------------TTEEEEEEGG-GGTT--CSCGGGE
T ss_pred HHHHHHHHHhccccccccCCCCCEEEEecCccccHHHHHHHcCC------------CCCccCCCHH-HHHh--hCCCCce
Confidence 99997 5777 57899999999999999999888884 3333443332 1111 1236889
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccccccee
Q 045431 208 IIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLG 287 (433)
Q Consensus 208 ~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G 287 (433)
++++||||||||.+.. +..+++.+|.||+|.+..+ .++. ...+++|+++||||++|++|+|+|
T Consensus 199 ii~l~sPnNPtG~l~~----------~v~~~~~~I~DEaY~~~~f----~~~~---~~~~~~Ivl~S~SK~fglaGlRiG 261 (425)
T d2hoxa1 199 IEMVTSPNNPEGLLRH----------AVIKGCKSIYDMVYYWPHY----TPIK---YKADEDILLFTMSKFTGHSGSRFG 261 (425)
T ss_dssp EEEEESSCTTTCCCCC----------CSSTTCEEEEECTTCSTTT----SCCC---SCBCCSEEEEEHHHHTSCGGGCCE
T ss_pred EEEEECCCCCCcchhh----------hhhhCCEEEEeccccCccc----cchh---hhcCCeEEEEeCHHhccCcchhee
Confidence 9999999999998642 2246899999999975322 2222 235678999999999999999999
Q ss_pred eeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcC----------ChhHHHHHHHHHHHHHHHHHHHHh
Q 045431 288 WTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPE----------GFKAVHEVIGFYKENTDIIVETFN 357 (433)
Q Consensus 288 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~----------~~~~~~~~~~~~~~~~~~l~~~l~ 357 (433)
|++++++.+ .+.+..+......+++.++|.++.++++.. ..+.++..++.++++++.+.+.|+
T Consensus 262 w~i~~~~~i-------~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~ 334 (425)
T d2hoxa1 262 WALIKDESV-------YNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLD 334 (425)
T ss_dssp EEEECCHHH-------HHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEeCCHHH-------HHHHHHhhccCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988877665 466777777777889999999998887531 124567888899999999999998
Q ss_pred hcCC-e--------------eecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHH
Q 045431 358 SLGF-K--------------VYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVL 422 (433)
Q Consensus 358 ~~g~-~--------------~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~ 422 (433)
+.+. . ...+..+.|.|+++.... .+...++++++||.++||+.|+. +++++|||+..++++++
T Consensus 335 ~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~~-~~~~~~lL~e~gI~v~pGs~FG~-~~~yvRisl~~~~e~ld 412 (425)
T d2hoxa1 335 QSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEE-DKDCYQTFQNGRINTQNGVGFEA-SSRYVRLSLIKTQDDFD 412 (425)
T ss_dssp TSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGG-GCSHHHHHHHTTEECEEGGGGTS-CTTEEEEECSSCHHHHH
T ss_pred hcCCceeeccCCccceeeeeeccCCCcceeeeeCCCCh-HHHHHHHHHhCCEEEEechhcCC-CCCEEEEEecCCHHHHH
Confidence 8642 1 122345678999987433 33455667788999999999974 56899999988999999
Q ss_pred HHHHHHHHhhC
Q 045431 423 EACKRFKHLYK 433 (433)
Q Consensus 423 ~~l~~l~~~l~ 433 (433)
+++++|+++++
T Consensus 413 ~~l~rL~~~v~ 423 (425)
T d2hoxa1 413 QLMYYLKDMVK 423 (425)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999999875
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.95 E-value=7.4e-28 Score=227.12 Aligned_cols=303 Identities=15% Similarity=0.105 Sum_probs=201.0
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR- 141 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~- 141 (433)
+.++++.....+++.++...+++... +++..+.+++++..++++. +.+.+++++|+|+++++..
T Consensus 20 ~~i~~~~gl~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~~~~~~---~~~~e~~~~~~~~~~a~~~~ 84 (366)
T d2aeua1 20 DALYDLSGLSGGFLIDEKDKALLNTY------------IGSSYFAEKVNEYGLKHLG---GDENDKCVGFNRTSSAILAT 84 (366)
T ss_dssp GGCEECSSCCCCCCCCHHHHHHHTST------------THHHHHHHHHHHHHHHHHT---CCTTEEEEEESSHHHHHHHH
T ss_pred chHhhhccCCCCCCccHHHHHHHHHh------------cCchhhHHHHHHHHHHHcc---CCCccEEEEeCCHHHHHHHH
Confidence 35788876666666666655544321 2233466888888888873 2356789999999999987
Q ss_pred HHHhcCCCCEE-EE-eCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC--CCCccEEEEcCCCCc
Q 045431 142 LQIVFGSNVTM-AV-QDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST--VARTDIIFFCSPNNP 217 (433)
Q Consensus 142 l~~l~~~gd~V-l~-~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~p~nP 217 (433)
+.++ .+||.| ++ +.|+|+.+...++..|. +. +..++ ..+++. .+++++|++++|+||
T Consensus 85 l~al-~~~~~vi~~~~~~~~~~~~~~~~l~g~------------~~--v~~~d----~e~l~~~i~~~tk~i~~~~p~n~ 145 (366)
T d2aeua1 85 ILAL-KPKKVIHYLPELPGHPSIERSCKIVNA------------KY--FESDK----VGEILNKIDKDTLVIITGSTMDL 145 (366)
T ss_dssp HHHH-CCSEEEEECSSSSCCTHHHHHHHHTTC------------EE--EEESC----HHHHHTTCCTTEEEEEECBCTTS
T ss_pred HHHh-CCCCEEEEecCCCcchhHHHHHHhcCC------------eE--ECCCC----HHHHHHhcCCCceEEEEEecCCC
Confidence 5554 556555 44 46899999999998883 33 22221 112222 468999999999998
Q ss_pred cccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCC-CcccccCCCCcceEEEecccccccccccceeeeecccccc
Q 045431 218 TGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNP-RSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELL 296 (433)
Q Consensus 218 tG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~-~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~ 296 (433)
+ +++.+++++|+++|++||+++|+||+|+...++... .+.... +..+++.|+||.+ +|+|+||++++++++
T Consensus 146 ~--~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~----~~di~~~S~sK~~--~g~~~G~i~~~~~~i 217 (366)
T d2aeua1 146 K--VIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKL----GADLVVTSTDKLM--EGPRGGLLAGKKELV 217 (366)
T ss_dssp C--BCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHH----TCSEEEEETTSSS--SSCSCEEEEEEHHHH
T ss_pred C--cCCHHHHHHHHHHhccCcEEEEEecCccccccccccCCCHhhc----CceEEEecccccc--cccceeEEEecHHHH
Confidence 6 467889999999999999999999999875554321 122222 1238889999976 689999999999986
Q ss_pred ccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHH----HHHHHHHHHhhc-CC--eeecCCCc
Q 045431 297 FSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKE----NTDIIVETFNSL-GF--KVYGGKNA 369 (433)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~----~~~~l~~~l~~~-g~--~~~~~~~g 369 (433)
+.+...........+++.|.++.+.|+......+++..+..++ ..+.+....... ++ ....+..+
T Consensus 218 --------~~~~~~~~~~g~~~~~~~~~a~~~aL~tl~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (366)
T d2aeua1 218 --------DKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPT 289 (366)
T ss_dssp --------HHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSS
T ss_pred --------HHHHHHHhcccccCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhccccccccccCcccccCcc
Confidence 6666665555566788888888877753322222222221111 112222222222 22 22333456
Q ss_pred cEEEEECCCC------ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc
Q 045431 370 PYVWVQFPGR------SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG 416 (433)
Q Consensus 370 ~~~~~~~~~~------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~ 416 (433)
.++|...... .+.++...+++++||.+.||..| +.+++++||+++.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~a~~Ll~~~gV~~ip~~~~-p~~~~~lRis~~~ 341 (366)
T d2aeua1 290 GFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGM-PGASKSLRIDLTS 341 (366)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTSSS-CSSCCSEEEETTS
T ss_pred chhccCCCcceeecccCHHHHHHHHHHhCCEEEEECCCC-CCCCCEEEEeccc
Confidence 6777766532 34567788899999999999888 4567899999865
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.94 E-value=4.4e-26 Score=216.69 Aligned_cols=335 Identities=15% Similarity=0.110 Sum_probs=213.8
Q ss_pred eEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCC----CCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHH
Q 045431 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAE----QGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDIS 140 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~----~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~ 140 (433)
.+-|..+... +.|..+.+++.+.+..... .+...+... .-..++|+.+|+++ ++++++|++|+|++++++
T Consensus 8 ~~yld~~~~~-~~p~~v~ea~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~~~~i~~~~g~t~a~~ 81 (381)
T d1elua_ 8 KTYFNFGGQG-ILPTVALEAITAMYGYLQE-NGPFSIAANQHIQQLIAQLRQALAETF----NVDPNTITITDNVTTGCD 81 (381)
T ss_dssp SEECCTTTCC-CCCHHHHHHHHHHHHHHHH-HCSSSHHHHHHHHHHHHHHHHHHHHHT----TSCGGGEEEESSHHHHHH
T ss_pred CEEeeCCccc-CCCHHHHHHHHHHHHHhhc-CCCccchhhHHHHHHHHHHHHHHHHHh----CCCcccEEEECChHHHhh
Confidence 3566666543 6788888998887764432 111122111 11345677777776 889999999999999998
Q ss_pred H-HHHh-cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC---CCC--CCCccEEEEcC
Q 045431 141 R-LQIV-FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD---LST--VARTDIIFFCS 213 (433)
Q Consensus 141 ~-l~~l-~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~i~l~~ 213 (433)
+ +.++ +++||+|++.++.|++....++.+..+.. ..+..++.+........ +++ .++++++++++
T Consensus 82 ~~~~~l~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g--------~~~~~v~~~~~~~~~~~~~~l~~~i~~~t~~v~i~~ 153 (381)
T d1elua_ 82 IVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFG--------ITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSH 153 (381)
T ss_dssp HHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHC--------CEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEES
T ss_pred hcchhhhhcCCceEEEeccccceeeecccccccccc--------ccccccccccccccchHHHHHHhhhccccccccccc
Confidence 7 4565 58999999999999887665544321100 47777777544332211 222 46889999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHc----CCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeee
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDN----GSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWT 289 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~----~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l 289 (433)
++||||.+++ +++|.++|+++ ++++++|.+++.... +..+..+ +..+++.|++|+++ .+.++|++
T Consensus 154 ~~n~tG~~~~---~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~---~~~~~~~----~~D~~~~s~~K~~~-~p~G~g~l 222 (381)
T d1elua_ 154 LLWNTGQVLP---LAEIMAVCRRHQGNYPVRVLVDGAQSAGSL---PLDFSRL----EVDYYAFTGHKWFA-GPAGVGGL 222 (381)
T ss_dssp BCTTTCCBCC---HHHHHHHHHHCCSSSCCEEEEECTTTBTTB---CCCTTTS----CCSEEEEESSSTTC-CCTTCEEE
T ss_pred ccccccccch---hhHHHHHHhhcccccccccccccccccccc---ccccccc----cccccccccccccc-ccchhhHH
Confidence 9999999999 56677777774 699999999884211 3333322 23488999999996 55668999
Q ss_pred eccccccccCCcchhH-------------HHH-HHHhhccCCCcHHHHHHHHHhc---CcCChhHHHHHHHHHHHHHHHH
Q 045431 290 VIPKELLFSDGFPVAK-------------DFN-RIVCTCFNGASNISQAGGLACL---SPEGFKAVHEVIGFYKENTDII 352 (433)
Q Consensus 290 ~~~~~~~~~~~~~~~~-------------~~~-~~~~~~~~~~~~~~q~~~~~~l---~~~~~~~~~~~~~~~~~~~~~l 352 (433)
++++.......+.... .+. ........+.+.....++.+++ ...+. .+...++..++++++
T Consensus 223 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~--~~~~~~~~~~~~~~l 300 (381)
T d1elua_ 223 YIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGT--AEERYQAICQRSEFL 300 (381)
T ss_dssp EECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHH
T ss_pred HhhHHHHHhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHHhcc--cccchhhhhhHHHHH
Confidence 8887765211000000 000 0000111223333333333333 32222 245567888889999
Q ss_pred HHHHhhc-CCeeecC--CCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHH
Q 045431 353 VETFNSL-GFKVYGG--KNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKR 427 (433)
Q Consensus 353 ~~~l~~~-g~~~~~~--~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~ 427 (433)
.+.|+++ |+.+..+ ..+.++++.+++....+.+...++++||.++.. ..++++|+|+ +++.+|+++++++
T Consensus 301 ~~~L~~~~~~~~~~~~~~~~~~vsf~~~~~~~~~~i~~~L~~~gi~v~~~-----~~~~~lRis~~~~nt~edid~ll~~ 375 (381)
T d1elua_ 301 WRGLNQLPHVHCLATSAPQAGLVSFTVDSPLGHRAIVQKLEEQRIYLRTI-----ADPDCIRACCHYITDEEEINHLLAR 375 (381)
T ss_dssp HHHHHHSTTEEESCSSCCSSSEEEEEECSSSCHHHHHHHHHHTTEECEEE-----TTTTEEEEECCTTCCHHHHHHHHHH
T ss_pred HHHHhcCCCeEecCCCCccccEEEEEcCCCCCHHHHHHHHHhCCcEEEec-----CCCCEEEEecCCCCCHHHHHHHHHH
Confidence 9999997 7777542 234577777775444444445566679988642 2357999995 5689999999999
Q ss_pred HHHh
Q 045431 428 FKHL 431 (433)
Q Consensus 428 l~~~ 431 (433)
|+++
T Consensus 376 l~e~ 379 (381)
T d1elua_ 376 LADF 379 (381)
T ss_dssp HTTC
T ss_pred HHhh
Confidence 9875
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.93 E-value=6.8e-25 Score=206.10 Aligned_cols=339 Identities=14% Similarity=0.133 Sum_probs=234.3
Q ss_pred CCceEEecCCCC-CCCChHHHHHHHHHHHhhcccCCCCC--CCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHH
Q 045431 62 DAEVISLGIGDT-TEPIPEVITSALAKRSYALSTQEGYS--GYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCD 138 (433)
Q Consensus 62 ~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~~~~~~~~--~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~a 138 (433)
+.++++|+++++ .+...+.+.++..+++.+++.....+ -++...-..+|.+.+|+|+ +. ++.+++++|..+.
T Consensus 44 ~~~~~~FsSndYLGL~~~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~----g~-e~all~~sG~~An 118 (396)
T d2bwna1 44 KQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLH----QK-EAALVFSSAYNAN 118 (396)
T ss_dssp EEEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHT----TC-SEEEEESCHHHHH
T ss_pred CeEEEEEEcccccCcCCCHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHHHHHh----CC-CceeeeecchHHH
Confidence 457899999987 56688999999999999886533332 2333344567888888886 53 4677777777777
Q ss_pred HHHHHHh--cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCC--CCCCccEEEEcCC
Q 045431 139 ISRLQIV--FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS--TVARTDIIFFCSP 214 (433)
Q Consensus 139 l~~l~~l--~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~l~~p 214 (433)
+.++..+ ..++|.|+.+.-.|.+....++..+ .++..+++++.......+. ...+.++|++..-
T Consensus 119 ~~~i~~l~~~~~~d~i~~D~~~Hasi~~g~~ls~------------a~~~~f~Hnd~~~l~~l~~~~~~~~~~~iv~egv 186 (396)
T d2bwna1 119 DATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNA------------GPKRIFRHNDVAHLRELIAADDPAAPKLIAFESV 186 (396)
T ss_dssp HHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSC------------CCEEEECTTCHHHHHHHHHHSCTTSCEEEEEESB
T ss_pred HHHHHHHhcccCCCceeehhhhhhccchhhhccc------------cCceEeecchHHHhhhHHhhhcccCceeEEEEee
Confidence 7777655 5789999999999999998888887 3667777654322111111 1123445444466
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCC-CCcceEEEecccccccccccceeeeeccc
Q 045431 215 NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPG-AKEVAIETSSFSKYAGFTGVRLGWTVIPK 293 (433)
Q Consensus 215 ~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~-~~~~vi~i~S~sK~~~~~G~r~G~l~~~~ 293 (433)
-+.+|.+.| +++|++++++||+++++||+|+..+.+.....+.+..+ ..+..++++||||.+|..| ||+++++
T Consensus 187 ySmdGd~ap---l~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g~~G---g~v~~~~ 260 (396)
T d2bwna1 187 YSMDGDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG---GYIAASA 260 (396)
T ss_dssp CTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC---EEEEECH
T ss_pred ccCcccccc---cHhHHHHhhhhcceeeeccceeeeeeccccccchhhcCCceeeeeeeecccccccccc---cccchhH
Confidence 778899999 88889999999999999999997666544333333211 2345699999999999888 9999998
Q ss_pred cccccCCcchhHHHHHHH-hhccCC-CcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccE
Q 045431 294 ELLFSDGFPVAKDFNRIV-CTCFNG-ASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPY 371 (433)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~ 371 (433)
+++ +.+.... ...+.+ .++....++.+.++-......++.++.++.+.+++.+.+...|+.+.. ..+..
T Consensus 261 ~~i--------~~l~~~~~~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~g~~~~~-~~spI 331 (396)
T d2bwna1 261 RMV--------DAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIID-HGSHI 331 (396)
T ss_dssp HHH--------HHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHTCCBCC-CSSSC
T ss_pred HHH--------HHHHhhcchhhhcccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhcCCCcCC-CCCCE
Confidence 885 4443322 222222 333433344444432222233666788888999999999999988765 45666
Q ss_pred EEEECCC-CChHHHHHHHHHcCCeEecCCCCCC-CCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 372 VWVQFPG-RSSWDVFSEILEKTHVVTTPGSGFG-PGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 372 ~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~-~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
+.+.+.. ....++.+.+++++||.+.+..... +.+...+||++ ..+.+||+.+++.|+++|
T Consensus 332 vpv~ig~~~~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~lsa~ht~edId~l~~~L~~iw 396 (396)
T d2bwna1 332 VPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLW 396 (396)
T ss_dssp EEEECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC
T ss_pred EEEEeCCHHHHHHHHHHHHHhCCEEEEEECCCcCCCCCeeEEEEeCccCCHHHHHHHHHHHHHhC
Confidence 6666653 2334566677877799997754322 34567899996 348999999999999875
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=1.6e-24 Score=206.37 Aligned_cols=330 Identities=12% Similarity=0.103 Sum_probs=212.3
Q ss_pred EEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCC-C-----------CCHHHHHHHHHHHhccCCCCCCcEEEcC
Q 045431 66 ISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAE-Q-----------GEKPLRAAIASTFYKDLGIEEGDIFVSD 133 (433)
Q Consensus 66 i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~-~-----------g~~~lr~~la~~l~~~~~~~~~~i~~~~ 133 (433)
|-|+.+.. -|.++.+.+++.+.+.+. ..|+.+ . -..++|+.+|+++ ++++++|++|+
T Consensus 4 iYlD~aa~-~p~~~~v~ea~~~~~~~~------~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~l----g~~~~~I~~~~ 72 (391)
T d1p3wa_ 4 IYLDYSAT-TPVDPRVAEKMMQFMTMD------GTFGNPASRSHRFGWQAEEAVDIARNQIADLV----GADPREIVFTS 72 (391)
T ss_dssp EECBTTTC-CCCCHHHHHHHHTTTSTT------SCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHH----TCCGGGEEEES
T ss_pred EEeeCccc-cCCCHHHHHHHHHHHHhc------cccCCCchhhhHHHHHHHHHHHHHHHHHHHHc----CCCCCcEEEEC
Confidence 45555543 378899999998877532 122221 1 1336788888887 89999999999
Q ss_pred ChHHHHHH-HHH----hcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CC--CCCC
Q 045431 134 GAKCDISR-LQI----VFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LS--TVAR 205 (433)
Q Consensus 134 G~~~al~~-l~~----l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~ 205 (433)
|++++++. +.+ .+++||+|++.++.|+++...++.+...| .++..++.+.++.++.+ ++ -.++
T Consensus 73 ~~t~~l~~~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G---------~~v~~v~~~~~~~~d~~~~~~~i~~~ 143 (391)
T d1p3wa_ 73 GATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREG---------FEVTYLAPQRNGIIDLKELEAAMRDD 143 (391)
T ss_dssp SHHHHHHHHHHHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHTT---------CEEEEECCCTTSCCCHHHHHHHCCTT
T ss_pred CHHHHHHHHHhhhhhhhcCCCCEEEEeccccchHHHHHHHHHHcC---------CEEEEeCCCCCCeEcHHHHHHhCCCC
Confidence 99999886 433 35899999999999999877776553223 48888888765443322 21 1479
Q ss_pred ccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccc
Q 045431 206 TDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVR 285 (433)
Q Consensus 206 ~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r 285 (433)
|++|++++++||||.+++ +++|+++|++||+++++|.+|+.... +..+... +..+++.|++|++|.+|
T Consensus 144 T~lv~is~~~n~tG~~~~---~~~I~~~~~~~~~~~ivD~~~~~g~~---~~d~~~~----~~D~~~~s~~k~~g~~g-- 211 (391)
T d1p3wa_ 144 TILVSIMHVNNEIGVVQD---IAAIGEMCRARGIIYHVDATQSVGKL---PIDLSQL----KVDLMSFSGHKIYGPKG-- 211 (391)
T ss_dssp EEEEECCSBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTBTTB---CCCTTTS----CCSEEEEESTTTTSCSS--
T ss_pred cEEEEEECCCCCCeeECC---HHHHHHHhccCCcEEEEeeccccCCc---cccchhc----cccccccccccccCCCc--
Confidence 999999999999999999 67899999999999999999984322 3333332 22377889999987666
Q ss_pred eeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcC-Ceee
Q 045431 286 LGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLG-FKVY 364 (433)
Q Consensus 286 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~ 364 (433)
+|+++++++.+....+..... ...........+.....+....+. ...+......+++++.+..+.+.|.+.+ ..+.
T Consensus 212 ~g~~~~~~~~~~~~~~~~~gg-~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 289 (391)
T d1p3wa_ 212 IGALYVRRKPRVRIEAQMHGG-GHERGMRSGTLPVHQIVGMGEAYR-IAKEEMATEMERLRGLRNRLWNGIKDIEEVYLN 289 (391)
T ss_dssp CEEEEECBTTBCCCCCSSCSS-CTTTTTSCSCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTTTSTTEEEC
T ss_pred eEEEEEecchhcccCCcccCC-ccccCcccCcchhhhhhhhhhhhh-HHHHHhhHHHHHHHHHHHHHHHHHHhhcCeeec
Confidence 688888877653221111100 000011112223223322222222 1112334555667777788888887763 3322
Q ss_pred c--CC-CccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCC-----------------CCCeEEEee--ccChhHHH
Q 045431 365 G--GK-NAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPG-----------------GEGFIRVSA--FGHRGNVL 422 (433)
Q Consensus 365 ~--~~-~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~-----------------~~~~iRi~~--~~~~~~l~ 422 (433)
. +. ....+.+.+++.....+...+ .++.++.|..|... ..+++|+|+ ++|.+|++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~i~v~~G~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS~~~~nt~edid 366 (391)
T d1p3wa_ 290 GDLEHGAPNILNVSFNYVEGESLIMAL---KDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEID 366 (391)
T ss_dssp SCTTTSCTTEEEEEETTSCHHHHHHHT---TTEECBCCCC------CCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHH
T ss_pred ccccccCceEEEEEeCCCChHHHHHHh---CCCEEEccccccCCccchhHHHHHcCCCccccCCEEEEecCCCCCHHHHH
Confidence 1 12 234455666766666665554 37778777655311 025799996 56999999
Q ss_pred HHHHHHHHhh
Q 045431 423 EACKRFKHLY 432 (433)
Q Consensus 423 ~~l~~l~~~l 432 (433)
.+++.|++++
T Consensus 367 ~l~~~l~~~l 376 (391)
T d1p3wa_ 367 YTIELVRKSI 376 (391)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999876
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.93 E-value=5.8e-25 Score=207.44 Aligned_cols=291 Identities=13% Similarity=0.082 Sum_probs=184.2
Q ss_pred CHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceE
Q 045431 107 EKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKI 185 (433)
Q Consensus 107 ~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 185 (433)
...+++.+|+++ +. |++++|+|+++++.+ +.++++|||+|++++++|.+....++..| .++
T Consensus 49 ~~~~~~~~A~~~----g~--e~~~~t~g~t~a~~~~~~al~~~gd~Vi~~~~~h~s~~~~~~~~g------------~~v 110 (364)
T d2e7ja1 49 HDFIHNQLPKFL----GC--DVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAG------------LNI 110 (364)
T ss_dssp HHHHHTHHHHHT----TS--SEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTT------------CEE
T ss_pred HHHHHHHHHHHh----Cc--CEEEEECcHHHHHHHHHHHHhCCCcEEEeecccccccchHHHhcc------------ceE
Confidence 355788888886 54 689999999999987 68899999999999999999888888888 588
Q ss_pred EEeecCccCCcccCCCC----------CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC
Q 045431 186 EYMRCTAENGFFPDLST----------VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN 255 (433)
Q Consensus 186 ~~~~~~~~~~~~~~~~~----------~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~ 255 (433)
+.+|+++..++..+++. ..++++|++++|+||||.+.+ +++|+++|++||+++++|++|+....
T Consensus 111 ~~v~~~~~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~---l~~I~~ia~~~~i~livD~a~~~g~~--- 184 (364)
T d2e7ja1 111 ALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRM--- 184 (364)
T ss_dssp EEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTTBTTB---
T ss_pred EEeeeccccccccCHHHHHhhhhhhcccCCceEEEeecCCCCCceeec---chhheeccccccchhhccccchhhhh---
Confidence 88988765554444321 234567888999999999988 78899999999999999999974222
Q ss_pred CCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh
Q 045431 256 PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF 335 (433)
Q Consensus 256 ~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~ 335 (433)
+.++.++. ..++++|+||+++.+| ++||++++++++............................++.+.+.. ..
T Consensus 185 ~~~~~~~g----~D~~~~S~~K~~~~~g-~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~ 258 (364)
T d2e7ja1 185 PVSLKEIG----ADFIVGSGHKSMAASG-PIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPH-VR 258 (364)
T ss_dssp CCCHHHHT----CSEEEEEHHHHSSCCS-SCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHH-HH
T ss_pred hhcccccc----cceeeeccccccCCCC-CEEEEEECHHHHHHHHhhccccCcccccccccccchhHHHHHHHHHHH-HH
Confidence 33343332 2388999999998555 799999998875221100000000000000011111222222222221 01
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCeeec--CCCccEEEEECCC--------CChHHHHHHHHHcCCeEecCCCCCCCC
Q 045431 336 KAVHEVIGFYKENTDIIVETFNSLGFKVYG--GKNAPYVWVQFPG--------RSSWDVFSEILEKTHVVTTPGSGFGPG 405 (433)
Q Consensus 336 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~--~~~g~~~~~~~~~--------~~~~~~~~~l~~~~gi~v~~g~~f~~~ 405 (433)
++++...+. .++++.+.+.|++.|+.... +......++..+. ..........+...++.... +.
T Consensus 259 ~~~~~~~~~-~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~g 332 (364)
T d2e7ja1 259 ERIKRWDEE-VEKARRFAAEMEKLGIKQLGDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYRELKSRKIHGIK-----PG 332 (364)
T ss_dssp HHGGGHHHH-HHHHHHHHHHHHHTTCEEESSSSCCSSEEEEECHHHHHHHHHSSSGGGHHHHHHHHTTEECSC-----TT
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHcCCeecCCCCCCcceEEEeccchHHHHHHhhccchHHHHHHHhcCCceec-----CC
Confidence 222333333 34566778888888877643 2233344444431 11122333344445665321 12
Q ss_pred CCCeEEEee-ccChhHHHHHHHHHHHhhC
Q 045431 406 GEGFIRVSA-FGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 406 ~~~~iRi~~-~~~~~~l~~~l~~l~~~l~ 433 (433)
....+|++. ..++++++.++++|+++++
T Consensus 333 ~~~~~~~~~~~~t~edid~~~~~l~ei~~ 361 (364)
T d2e7ja1 333 LTRYFKLSTYGLSDEEVDYVLNAFKEIIE 361 (364)
T ss_dssp CCSEEEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred CcceEEEeccCCCHHHHHHHHHHHHHHHH
Confidence 235678874 4589999999999999863
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=6.8e-25 Score=207.22 Aligned_cols=337 Identities=10% Similarity=0.069 Sum_probs=230.5
Q ss_pred CCCceEEecCCCC-CCCChHHHHHHHHHHHhhcccCCCCC--CCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHH
Q 045431 61 PDAEVISLGIGDT-TEPIPEVITSALAKRSYALSTQEGYS--GYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 61 ~~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~~~~~~~~--~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~ 137 (433)
++.++++|+++++ .+...|.+.+++.+++.+++.....+ .++...-..+|.+.||+|+ +. ++-+++.+|...
T Consensus 36 ~g~~~l~f~s~dYLGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~----g~-e~al~~~SG~~a 110 (383)
T d1bs0a_ 36 DDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWL----GY-SRALLFISGFAA 110 (383)
T ss_dssp TTEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH----TC-SEEEEESCHHHH
T ss_pred CCeEEEEEEcccccccCCCHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhc----CC-CceEEecccchh
Confidence 4567999999876 45678999999999999886533332 2334445688899999987 53 345666666666
Q ss_pred HHHHHHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-CCCccEEEEcCCCC
Q 045431 138 DISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-VARTDIIFFCSPNN 216 (433)
Q Consensus 138 al~~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~l~~p~n 216 (433)
.+.++..+++++|.|+++...|.......+..+ .+++.++.++.......+.. .++.++|++....+
T Consensus 111 n~~~i~al~~~~d~v~~d~~~h~si~~g~~~~~------------~~~~~~~hnd~~~le~~l~~~~~~~~~vv~e~v~s 178 (383)
T d1bs0a_ 111 NQAVIAAMMAKEDRIAADRLSHASLLEAASLSP------------SQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFS 178 (383)
T ss_dssp HHHHHHHHCCTTCEEEEETTCCHHHHHHHHTSS------------SEEEEECTTCHHHHHHHHHSCCSSCEEEEEESBCT
T ss_pred hHHHHHhhcCCCceEEeeccccHHHhhccccCC------------CcceEecchHHHHHHHHhcccCCCceEEEecCCCC
Confidence 666789999999999999999999888887766 46777776543332222323 23455666668899
Q ss_pred ccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecccccc
Q 045431 217 PTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELL 296 (433)
Q Consensus 217 PtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~ 296 (433)
.+|.+.+ +++|+++|++||+++++||+|+....+.......+..+.. ..+++.|++|.+|++| |++.++...+
T Consensus 179 ~~G~i~p---l~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~~-~~~~~~t~~ka~g~~G---g~v~~~~~~~ 251 (383)
T d1bs0a_ 179 MDGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVK-PELLVVTFGKGFGVSG---AAVLCSSTVA 251 (383)
T ss_dssp TTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCC-CSEEEEESSSTTSSCC---EEEEECHHHH
T ss_pred CCCcccc---hhHHHHHHHhcCcEEEeecceeeeecCCcccchHHHcCCc-cccccccccccccccc---cccccchhHH
Confidence 9999999 7778888999999999999999766654433333333322 3467789999999777 9999988874
Q ss_pred ccCCcchhHHHHHHH-hhcc-CCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEE
Q 045431 297 FSDGFPVAKDFNRIV-CTCF-NGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWV 374 (433)
Q Consensus 297 ~~~~~~~~~~~~~~~-~~~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~ 374 (433)
+.+.... .... ...+++...++.+.++.......+..+++++++..++.+.|.+.|+.+.+. .++.+.+
T Consensus 252 --------~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~~~~~~-~s~Ii~v 322 (383)
T d1bs0a_ 252 --------DYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLADS-CSAIQPL 322 (383)
T ss_dssp --------HHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSCEECSC-CSSBCCE
T ss_pred --------HHHHhhchhhhhcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCccCCC-CCCEEEE
Confidence 4443221 1222 223334334444444321113346777888899999999999999887653 4554444
Q ss_pred ECCCC-ChHHHHHHHHHcCCeEecCCCCCC-CCCCCeEEEee--ccChhHHHHHHHHHHHh
Q 045431 375 QFPGR-SSWDVFSEILEKTHVVTTPGSGFG-PGGEGFIRVSA--FGHRGNVLEACKRFKHL 431 (433)
Q Consensus 375 ~~~~~-~~~~~~~~l~~~~gi~v~~g~~f~-~~~~~~iRi~~--~~~~~~l~~~l~~l~~~ 431 (433)
.+... ...++.+.|++ +||.+.+...-. +.++..+||++ ..+++||+++++.|..+
T Consensus 323 ~~g~~~~a~~~~~~L~~-~Gi~v~~~~~PtVp~g~~~lRi~~~a~ht~edid~l~~~L~~~ 382 (383)
T d1bs0a_ 323 IVGDNSRALQLAEKLRQ-QGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 382 (383)
T ss_dssp EEESHHHHHHHHHHHHH-TTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHHHH-CCceEEEEcCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 44421 23355566655 599997754222 34566799996 45899999999999764
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=4.7e-23 Score=196.76 Aligned_cols=340 Identities=12% Similarity=0.101 Sum_probs=227.5
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCC----CCCCHHHHHHHHHHHhccCCC-CCCcEEEcCChHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA----EQGEKPLRAAIASTFYKDLGI-EEGDIFVSDGAKC 137 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~----~~g~~~lr~~la~~l~~~~~~-~~~~i~~~~G~~~ 137 (433)
.+++-|..+... +.|+.+.+++.+.+.+.....+...+.. ..-..+.|+.+|+++ ++ ++++|++|+|+++
T Consensus 21 ~~~iYld~a~~~-~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l----~~~~~~~i~~~~~~T~ 95 (405)
T d1jf9a_ 21 LPLAYLDSAASA-QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFI----NARSAEELVFVRGTTE 95 (405)
T ss_dssp EECEECCTTTCC-CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHT----TCSCGGGEEEESSHHH
T ss_pred CCeEEEeCcccc-CCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHc----CCCCcccccccCcHHH
Confidence 356788777654 7899999999988765321111111100 012456677788876 75 4689999999999
Q ss_pred HHHH-HHH----hcCCCCEEEEeCCCChhhhhhHHHhCC-cccccccccccceEEEeecCccCCcccCC-C--CCCCccE
Q 045431 138 DISR-LQI----VFGSNVTMAVQDPSYPAYVDSSVIMGQ-TGEFQKDAEKYGKIEYMRCTAENGFFPDL-S--TVARTDI 208 (433)
Q Consensus 138 al~~-l~~----l~~~gd~Vl~~~p~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~ 208 (433)
+++. +.. .+.+||.|++.+..|++....++.+.. .| +++..+|+++++.+..+. + ..+++++
T Consensus 96 ~~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g---------~~v~~~~~~~~g~~~~~~~~~~i~~~t~l 166 (405)
T d1jf9a_ 96 GINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVG---------AELRVIPLNPDGTLQLETLPTLFDEKTRL 166 (405)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHT---------CEEEEECBCTTSCBCGGGHHHHCCTTEEE
T ss_pred HHHHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHcC---------cEEEEECCCCCCcCCHHHHHHhccCCcEE
Confidence 9986 333 358999999999999997766654421 12 488999988765443331 1 2478999
Q ss_pred EEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceee
Q 045431 209 IFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGW 288 (433)
Q Consensus 209 i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~ 288 (433)
+++++.+|.||..+| +++|.++|+++|+++++|.+++.... +..+.... ..+++.|++|++|.+| +|+
T Consensus 167 v~~~~v~~~tG~~~p---i~~i~~~~~~~g~~~~vD~~q~~g~~---~id~~~~~----~D~~~~s~hK~~Gp~G--~g~ 234 (405)
T d1jf9a_ 167 LAITHVSNVLGTENP---LAEMITLAHQHGAKVLVDGAQAVMHH---PVDVQALD----CDFYVFSGHKLYGPTG--IGI 234 (405)
T ss_dssp EEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTS---CCCHHHHT----CSEEEEEGGGTTSCSS--CEE
T ss_pred EEEecCCCcccccCc---hHHhhhHHHHcCCeeecccceecccc---ccchhhcC----CceeeccccccccCCC--cee
Confidence 999999999999999 78889999999999999999884211 33444442 2388999999988666 799
Q ss_pred eeccccccccCCcc-----------------hhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHH
Q 045431 289 TVIPKELLFSDGFP-----------------VAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDI 351 (433)
Q Consensus 289 l~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 351 (433)
++++++.+....+. ....-.++. ..+.+..+..++.++++-.....++...++.....+.
T Consensus 235 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e---~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~ 311 (405)
T d1jf9a_ 235 LYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFE---AGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHY 311 (405)
T ss_dssp EEECHHHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGC---CSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred eeechhhhcccCcccccccccCccccccccccccchhhhc---CCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 99888764211000 000001111 1234444444444444421112346666777777778
Q ss_pred HHHHHhhcC-CeeecC-CCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCC------CCCCCeEEEee--ccChhHH
Q 045431 352 IVETFNSLG-FKVYGG-KNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFG------PGGEGFIRVSA--FGHRGNV 421 (433)
Q Consensus 352 l~~~l~~~g-~~~~~~-~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~------~~~~~~iRi~~--~~~~~~l 421 (433)
+.+.++..+ +....+ ..+..+.+.+++....++...| .++||.++.|..|. ...++.+|+|+ +++.+|+
T Consensus 312 ~~~~l~~~~~~~~~~~~~r~~ivsf~~~~~~~~~~~~~L-~~~gI~v~~G~~c~~~~~~~~~~~g~iRiS~~~ynt~eDi 390 (405)
T d1jf9a_ 312 ALSQLESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFL-DNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEV 390 (405)
T ss_dssp HHHHHTTSTTEEEESCTTCCSEEEEEETTCCHHHHHHHH-HHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHH
T ss_pred HHhhhhcCCcccccCCcCcCcEEEEEcCCCCHHHHHHHH-HHCCcEEEccchhhhhHHHhcCCCCEEEEECCCCCCHHHH
Confidence 888888874 333333 3345666788877777666655 56799999888764 12367899995 6799999
Q ss_pred HHHHHHHHHhh
Q 045431 422 LEACKRFKHLY 432 (433)
Q Consensus 422 ~~~l~~l~~~l 432 (433)
+.+++.|++++
T Consensus 391 d~l~~~l~~i~ 401 (405)
T d1jf9a_ 391 DRLVTGLQRIH 401 (405)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998875
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=5.4e-23 Score=195.12 Aligned_cols=337 Identities=15% Similarity=0.125 Sum_probs=222.2
Q ss_pred CCCceEEecCCCC-CCCChHHHHHHHHHHHhhcccCCCCC--CCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHH
Q 045431 61 PDAEVISLGIGDT-TEPIPEVITSALAKRSYALSTQEGYS--GYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 61 ~~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~~~~~~~~--~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~ 137 (433)
++..+|||+++++ .+...|.+.+++.+++.+++...... .++...-..+|.+.+|+++ + .+.+++++++..
T Consensus 43 dG~~~l~f~s~dYLGl~~hp~v~~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA~~~----g--~e~al~~~SG~~ 116 (401)
T d1fc4a_ 43 DGSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFL----G--MEDAILYSSCFD 116 (401)
T ss_dssp TSCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHH----T--CSEEEEESCHHH
T ss_pred CCCEEEEEEccccccccCCHHHHHHHHHHHHHhCCCcccceeeccCcHHHHHHHHHHHHhh----c--CCceEEecchhh
Confidence 5677999998876 46678999999999998875322221 1223345567888888887 4 355666666666
Q ss_pred HHH-HHHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCC---CCCCccEEEEc-
Q 045431 138 DIS-RLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS---TVARTDIIFFC- 212 (433)
Q Consensus 138 al~-~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~l~- 212 (433)
+.. ++..+++++|.|+++...|.++...+...+ .++..++..+..+....+. .......++++
T Consensus 117 An~~~i~~l~~~~d~i~~d~~~h~s~~~G~~~~~------------a~~~~~~~~d~~~le~~~~~~~~~~~~~~liv~e 184 (401)
T d1fc4a_ 117 ANGGLFETLLGAEDAIISDALNHASIIDGVRLCK------------AKRYRYANNDMQELEARLKEAREAGARHVLIATD 184 (401)
T ss_dssp HHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTSC------------SEEEEECTTCHHHHHHHHHHHHHTTCSSEEEEEE
T ss_pred hhHHHHHHhcCCCcEEEeCCcchHHHHccccccC------------ceEEEEcCCChHHHHHHHHHhhhcccCceEEEEc
Confidence 655 588899999999999999999888777666 3555555543222111111 11222334444
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCccccc-CCCCcceEEEecccccccccccceeeeec
Q 045431 213 SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEI-PGAKEVAIETSSFSKYAGFTGVRLGWTVI 291 (433)
Q Consensus 213 ~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~-~~~~~~vi~i~S~sK~~~~~G~r~G~l~~ 291 (433)
...+..|...+ +++|.++|++||+++|+||+|+.+..........+. ...++..++++|++|.+| |...|++.+
T Consensus 185 gv~s~~G~~~~---L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~g--g~~Gg~v~g 259 (401)
T d1fc4a_ 185 GVFSMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALG--GASGGYTAA 259 (401)
T ss_dssp SEETTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTC--SSSCEEEEE
T ss_pred CCCCCCCchhh---hhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCCCeEEEeecccccc--cCCcccccC
Confidence 44566777777 888999999999999999999987766443333322 112344588999999984 333489988
Q ss_pred cccccccCCcchhHHHHHHH--hhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCc
Q 045431 292 PKELLFSDGFPVAKDFNRIV--CTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNA 369 (433)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g 369 (433)
+++++ +.+.... .......++....++...++.. ...++++++++++.+.+.+.+...|+.+... .+
T Consensus 260 ~~~~~--------~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~--~~~~~~~~~l~~~~~~~~~~l~~~g~~~~~~-~~ 328 (401)
T d1fc4a_ 260 RKEVV--------EWLRQRSRPYLFSNSLAPAIVAASIKVLEMV--EAGSELRDRLWANARQFREQMSAAGFTLAGA-DH 328 (401)
T ss_dssp CHHHH--------HHHHHHCHHHHHSCCCCHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHHHTTCCBCCS-SS
T ss_pred CHHHH--------HHHHcCChhhhhcCCCCHHHHHHHHhhhccc--ccCHHHHHHHHHHHHHHHhhhcccCCccCCC-CC
Confidence 88875 4333221 1122234455555555555421 1226778899999999999999998887654 45
Q ss_pred cEEEEECCC-CChHHHHHHHHHcCCeEecCCCCCC-CCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 370 PYVWVQFPG-RSSWDVFSEILEKTHVVTTPGSGFG-PGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 370 ~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~-~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
+.+.+.+.. ....++.+.|++ +||.+.+-..-. +.+...+|+++ ..+++||+++++.|+++.
T Consensus 329 pIv~v~~~~~~~a~~~~~~L~~-~Gi~v~~i~~PtVp~g~~~lRi~~~a~hT~edId~~v~al~ev~ 394 (401)
T d1fc4a_ 329 AIIPVMLGDAVVAQKFARELQK-EGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIG 394 (401)
T ss_dssp SEEEEEEECHHHHHHHHHHHHH-TTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHH-CCceEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 555555542 223356666655 599997643211 34556799996 348999999999999875
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.89 E-value=4.9e-22 Score=183.48 Aligned_cols=326 Identities=10% Similarity=0.065 Sum_probs=204.6
Q ss_pred EEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHH
Q 045431 66 ISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQI 144 (433)
Q Consensus 66 i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~ 144 (433)
++| .+++..+++|.+++|+.+... .....|++.....++|+.+++++ ++++++|++|+|+++++.+ +..
T Consensus 2 ~~f-~nd~~~g~~P~v~eAl~~~~~-----~~~~~y~~~~~~~~lr~~ia~~~----g~~~~~v~~tsggtean~~a~~~ 71 (340)
T d1svva_ 2 YSF-VNDYSVGMHPKILDLMARDNM-----TQHAGYGQDSHCAKAARLIGELL----ERPDADVHFISGGTQTNLIACSL 71 (340)
T ss_dssp EEC-SCSCSSCCCHHHHHHHHHHTT-----CCCCSTTCSHHHHHHHHHHHHHH----TCTTSEEEEESCHHHHHHHHHHH
T ss_pred CCc-ccCCCCCCCHHHHHHHHHHhh-----cCCCCCCCCHHHHHHHHHHHHHh----CCCcceEEEcCCHHHHHHHHHHH
Confidence 344 245556778899999998754 34567877778889999999998 8888999999999999887 688
Q ss_pred hcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-C-------CCCCCccEEEEcCCCC
Q 045431 145 VFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-L-------STVARTDIIFFCSPNN 216 (433)
Q Consensus 145 l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~i~l~~p~n 216 (433)
++.+++.+++..+.+..+.......+.... .....+.... ....+ . ........++++.+.|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (340)
T d1svva_ 72 ALRPWEAVIATQLGHISTHETGAIEATGHK---------VVTAPCPDGK-LRVADIESALHENRSEHMVIPKLVYISNTT 141 (340)
T ss_dssp HCCTTEEEEEETTSHHHHSSTTHHHHTTCC---------EEEECCTTSC-CCHHHHHHHHHHSCSTTSCEEEEEEEESSC
T ss_pred Hhhhccccccccccceeeeeccccccccee---------eeeccccccc-ccchhHHHHhhhhhcccCCcceeeeecccc
Confidence 889999999999998887655444442111 1111111110 10000 0 0112333455555556
Q ss_pred ccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCcccccCCCCcceEEEecccccccccccceeeeecccc
Q 045431 217 PTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN--PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKE 294 (433)
Q Consensus 217 PtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~ 294 (433)
++|.+...+++..+.+.|++++.+++.|++|........ ........ ....++..+..|..+ +.+.++......
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 217 (340)
T d1svva_ 142 EVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIA--RLTDMFYIGATKAGG--MFGEALIILNDA 217 (340)
T ss_dssp TTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHH--HHCSEEEEECTTTTC--SSCEEEEECSGG
T ss_pred cccccccHHHhhhhhcccccccceeeeeccceeeeeccccccccccccc--ccceeeecCCccccc--cccccccccchh
Confidence 677888999999999999999999999999975333221 11111111 112344445555443 333455554444
Q ss_pred ccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEE
Q 045431 295 LLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWV 374 (433)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~ 374 (433)
... ....................+++..++.... .....++...++.++.+.|++.|+.+..|..++++++
T Consensus 218 ~~~------~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~v~~ 288 (340)
T d1svva_ 218 LKP------NARHLIKQRGALMAKGWLLGIQFEVLMKDNL---FFELGAHSNKMAAILKAGLEACGIRLAWPSASNQLFP 288 (340)
T ss_dssp GCT------THHHHHHHTTCCCTTTHHHHHHHHHHTSTTH---HHHHHHHHHHHHHHHHHHHHHTTCCBSSCCSSSEECB
T ss_pred hhh------hhhhhcccccCccchhhHHHHHHHHHhhhhH---HHHHHHHHHHHHhhhHHHHhcCCCeeecCCCceEEEE
Confidence 431 0111122222233333444444455555332 2555677888888999999999999887888899998
Q ss_pred ECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHh
Q 045431 375 QFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHL 431 (433)
Q Consensus 375 ~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~ 431 (433)
.+++ +....++++..+...++ ...+++++|+++ ++|++||++++++|+++
T Consensus 289 ~~~~----~~~~~l~~~~~~~~~~~---~~~~~~~vR~s~~~~~t~edid~~l~~l~~l 340 (340)
T d1svva_ 289 ILEN----TMIAELNNDFDMYTVEP---LKDGTCIMRLCTSWATEEKECHRFVEVLKRL 340 (340)
T ss_dssp EEEH----HHHHHHTTTEECEEEEE---ETTTEEEEEEECCTTCCHHHHHHHHHHHHHC
T ss_pred eCCH----HHHHHHHHhhhhhcccc---cCCCCcEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 8863 44555554422111111 134568999984 67999999999999874
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.89 E-value=7.3e-22 Score=188.63 Aligned_cols=342 Identities=12% Similarity=0.118 Sum_probs=227.4
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCC----CCCCHHHHHHHHHHHhccCCCC-CCcEEEcCChH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA----EQGEKPLRAAIASTFYKDLGIE-EGDIFVSDGAK 136 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~----~~g~~~lr~~la~~l~~~~~~~-~~~i~~~~G~~ 136 (433)
++++|-|..+... +.|+.+.+++.+.+.+.....+...|.. ..-..+.|+.+++++ +++ ++.|+++++++
T Consensus 20 ~~~~iYld~a~~~-~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~ll----ga~~~~~i~~~~~tt 94 (408)
T d1t3ia_ 20 GHPLVYLDNAATS-QKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFI----NARSPREIVYTRNAT 94 (408)
T ss_dssp TEECEECBTTTCC-CCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHT----TCSCGGGEEEESSHH
T ss_pred CCCeEEeeCcccc-CCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHh----CCCCcccEEeecchH
Confidence 3457888877765 6899999999998875321111111110 012335777888886 886 58899999999
Q ss_pred HHHHHH-HH----hcCCCCEEEEeCCCChhhhhhHHHhCC-cccccccccccceEEEeecCccCCcccC-CC--CCCCcc
Q 045431 137 CDISRL-QI----VFGSNVTMAVQDPSYPAYVDSSVIMGQ-TGEFQKDAEKYGKIEYMRCTAENGFFPD-LS--TVARTD 207 (433)
Q Consensus 137 ~al~~l-~~----l~~~gd~Vl~~~p~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~ 207 (433)
++++++ .. .+++||+|++.+-.|++....++.... .+ ..+..++.+.++....+ +. ..++++
T Consensus 95 ~~~n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g---------~~v~~~~~~~~~~~~~~~l~~~~~~~t~ 165 (408)
T d1t3ia_ 95 EAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTG---------AVLKFVQLDEQESFDLEHFKTLLSEKTK 165 (408)
T ss_dssp HHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHC---------CEEEEECBCTTSSBCHHHHHHHCCTTEE
T ss_pred HHHHHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhccC---------ceEeeeeccccccccHHHhhhccCCCce
Confidence 998874 33 358999999999999987766653321 11 36777877655443222 11 147899
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccccccee
Q 045431 208 IIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLG 287 (433)
Q Consensus 208 ~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G 287 (433)
+|.+++.+|-||..++ +++|.++|+++|+++++|.+++.... +..+..++ ..+++.|.+|++|.+| +|
T Consensus 166 lv~i~~~~~~tG~~~p---~~~i~~~~~~~g~~~ivDa~q~~g~~---~id~~~~~----~D~~~~s~hK~~gp~G--~g 233 (408)
T d1t3ia_ 166 LVTVVHISNTLGCVNP---AEEIAQLAHQAGAKVLVDACQSAPHY---PLDVQLID----CDWLVASGHKMCAPTG--IG 233 (408)
T ss_dssp EEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTTS---CCCHHHHT----CSEEEEEGGGTTSCTT--CE
T ss_pred EEEEecccccccccCc---HHHHhhhhhccCceeeeccceecccc---cccccccC----CceEEeccccccCCCC--cc
Confidence 9999999999999999 67888889999999999999884211 44444442 2388999999987555 79
Q ss_pred eeeccccccccCCcchh----------------HHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHH
Q 045431 288 WTVIPKELLFSDGFPVA----------------KDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDI 351 (433)
Q Consensus 288 ~l~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 351 (433)
+++.+++......+... ..-.++. ..+.+.....++..+++-.....++++.++..+..++
T Consensus 234 ~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e---~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~ 310 (408)
T d1t3ia_ 234 FLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFE---AGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHY 310 (408)
T ss_dssp EEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGC---CSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred ccccchhhhhcCCceecCCcccccccccccccCCchhhhc---CCcHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhH
Confidence 99988776421100000 0001111 1223444444444444311112357777788888888
Q ss_pred HHHHHhhc-CCeeecC-----CCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCC------CCCCeEEEee--ccC
Q 045431 352 IVETFNSL-GFKVYGG-----KNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGP------GGEGFIRVSA--FGH 417 (433)
Q Consensus 352 l~~~l~~~-g~~~~~~-----~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~------~~~~~iRi~~--~~~ 417 (433)
+.+.+++. ++.+..+ ..+..+.+.+++.+..++...| .++||.+..|..|.. ...+.+|||+ +++
T Consensus 311 l~~~~~~~~~~~~~~~~~~~~~~~~iv~f~~~~~~~~~v~~~L-~~~gI~v~~G~~c~~~~~~~~~~~g~vRiS~~~ynt 389 (408)
T d1t3ia_ 311 LWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGLHASDVATMV-DQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNT 389 (408)
T ss_dssp HHHHHHTCTTEEEESCCGGGSCBCSEEEEEETTBCHHHHHHHH-HTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCC
T ss_pred HhhhhccCccccccCCCccccCcceEEEEEeCCCCHHHHHHHH-hhCCcEEecCcccccHHHHhhcCCccEEEECCCCCC
Confidence 88888887 5555432 2245677778877777776665 567999999887642 2357899995 779
Q ss_pred hhHHHHHHHHHHHhhC
Q 045431 418 RGNVLEACKRFKHLYK 433 (433)
Q Consensus 418 ~~~l~~~l~~l~~~l~ 433 (433)
.+|++.+++.|+++++
T Consensus 390 ~~did~li~~L~~~~~ 405 (408)
T d1t3ia_ 390 KEEIDLFLQSLQATIR 405 (408)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998763
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.89 E-value=9.4e-21 Score=179.13 Aligned_cols=329 Identities=16% Similarity=0.165 Sum_probs=202.0
Q ss_pred CCChHHHHHHHHHHHhhcccCCCCCCCCC----CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHH-H----Hh
Q 045431 75 EPIPEVITSALAKRSYALSTQEGYSGYGA----EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRL-Q----IV 145 (433)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~----~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l-~----~l 145 (433)
-++|+.+.+++.+.+.+... +....|.. .....+.|+.+++++ ++++++|++++|+++++..+ . ..
T Consensus 11 ~~~p~~v~ea~~~~~~~~~~-np~~~~~~~~~~~~~~~~aR~~ia~l~----~~~~~~i~~~~~~T~~l~~~~~~~~~~~ 85 (376)
T d1eg5a_ 11 TRVDDRVLEEMIVFYREKYG-NPNSAHGMGIEANLHMEKAREKVAKVL----GVSPSEIFFTSCATESINWILKTVAETF 85 (376)
T ss_dssp CCCCHHHHHHHHHHHHTCCC-CTTCSSHHHHHHHHHHHHHHHHHHHHH----TSCGGGEEEESCHHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHHcCC-CCccccHHHHHHHHHHHHHHHHHHHHc----CCCCCcEEEECCHHHHHHhhhhcccccc
Confidence 36788999999998864311 00001100 011335578888887 89999999999999999874 2 34
Q ss_pred cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CC--CCCCccEEEEcCCCCccccCC
Q 045431 146 FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LS--TVARTDIIFFCSPNNPTGAAA 222 (433)
Q Consensus 146 ~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~i~l~~p~nPtG~~~ 222 (433)
..+|+.|++....|+.+...++.+...+ .+++.+|++.++.++.+ ++ -.++++++++++++|+||..+
T Consensus 86 ~~~g~~v~~~~~~~~~~~~~~~~~~~~g---------~~v~~vp~~~~~~id~~~l~~~i~~~t~lv~is~v~~~tG~~~ 156 (376)
T d1eg5a_ 86 EKRKRTIITTPIEHKAVLETMKYLSMKG---------FKVKYVPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQ 156 (376)
T ss_dssp TTTCCEEEECTTSCHHHHHHHHHHHHTT---------CEEEECCBCTTSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBC
T ss_pred cccCcccccccccchhhHHHHHHHHhcC---------CEEEEEcCCCCCeECHHHHHHhcCCCceEEEEECCccccceee
Confidence 5888999999999988877776663333 48889998765443322 11 147999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcc
Q 045431 223 TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFP 302 (433)
Q Consensus 223 ~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~ 302 (433)
+.+++.++++ ++..++++++|.+++.... +..+..+ +..++++|++|++|.+|..+.|+ +++.... +.
T Consensus 157 ~~~~i~~~~~-~~~~~~~~~vD~~q~~g~~---~~d~~~~----~~D~~~~s~~K~~gp~G~~~l~~--~~~~~~~--p~ 224 (376)
T d1eg5a_ 157 PVEDVTRIVK-KKNKETLVHVDAVQTIGKI---PFSLEKL----EVDYASFSAHKFHGPKGVGITYI--RKGVPIR--PL 224 (376)
T ss_dssp CHHHHHHHHH-HHCTTCEEEEECTTTTTTS---CCCCTTT----CCSEEEEEGGGGTSCTTCEEEEE--CTTSCCC--CS
T ss_pred eehhhhhhhh-hcccCceeEEEeeeccccc---ccccccc----CccceecccceeecCCCceeEEe--ccCcccC--Cc
Confidence 9655555443 2344899999999874211 3333333 23489999999998888655554 4333110 00
Q ss_pred hhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecC---CCccEEEEECCCC
Q 045431 303 VAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGG---KNAPYVWVQFPGR 379 (433)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~---~~g~~~~~~~~~~ 379 (433)
...............+......+.+..... ................++.+.|.........+ .......+.+++.
T Consensus 225 -~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (376)
T d1eg5a_ 225 -IHGGGQERGLRSGTQNVPGIVGAARAMEIA-VEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTLSVSFPNI 302 (376)
T ss_dssp -BCSSCTTTTTBCSCCCHHHHHHHHHHHHHH-HHTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTEEEEECTTC
T ss_pred -ccCCCCcccccCCcccchhhhhHHHHhhcc-ccchhhhhhhhhhhhhhhccccccccccccccccccccceeeeccCCC
Confidence 000000111112223334433333333211 12234555566666777788887764444322 2233456667776
Q ss_pred ChHHHHHHHHHcCCeEecCCCCCCCCC-----------------CCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 380 SSWDVFSEILEKTHVVTTPGSGFGPGG-----------------EGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 380 ~~~~~~~~l~~~~gi~v~~g~~f~~~~-----------------~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
....+... +.++||.+++|..|.... .+.+|+|+ +++++|++.+++.|++++
T Consensus 303 ~~~~~~~~-L~~~gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~l~~~L~~iv 373 (376)
T d1eg5a_ 303 RGSTLQNL-LSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEIL 373 (376)
T ss_dssp CHHHHHHH-HHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHH-HhhCCeEEeCcchhcCCccchhHHHHHcCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 77666555 566799999887654221 24699996 679999999999999986
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.87 E-value=3.4e-22 Score=185.96 Aligned_cols=324 Identities=15% Similarity=0.147 Sum_probs=198.4
Q ss_pred eEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HH
Q 045431 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQ 143 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~ 143 (433)
+|||..-...-| +|++++|+.++. .+...|++.+...+|++.+|+++ |. +++++++|+++++.+ +.
T Consensus 1 ~~~~~~~~~t~p-~p~v~~A~~~a~------~g~~~yg~~p~~~~le~~lA~~~----G~--~~~~~~~sGt~A~~~al~ 67 (343)
T d1m6sa_ 1 MIDLRSDTVTKP-TEEMRKAMAQAE------VGDDVYGEDPTINELERLAAETF----GK--EAALFVPSGTMGNQVSIM 67 (343)
T ss_dssp CEECSCGGGCCC-CHHHHHHHHTCC------CCCGGGTCCHHHHHHHHHHHHHT----TC--SEEEEESCHHHHHHHHHH
T ss_pred CcccccccCCCC-CHHHHHHHHhhh------cCCcccCCCHHHHHHHHHHHHHH----CC--CeEEEeCCHHHHHHHHHH
Confidence 477755443333 467888887643 23346888788899999999997 54 467777788888765 78
Q ss_pred HhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-----CC----CCCCccEEEEc-C
Q 045431 144 IVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-----LS----TVARTDIIFFC-S 213 (433)
Q Consensus 144 ~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~i~l~-~ 213 (433)
.++++||.+++..+.+..+.......+..+. ....++.+.. ....+ +. ...++..+++. .
T Consensus 68 a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 137 (343)
T d1m6sa_ 68 AHTQRGDEVILEADSHIFWYEVGAMAVLSGV---------MPHPVPGKNG-AMDPDDVRKAIRPRNIHFPRTSLIAIENT 137 (343)
T ss_dssp HHCCTTCEEEEETTCHHHHSSTTHHHHHTCC---------EEEEECEETT-EECHHHHHHHSCCSCTTSCCEEEEEEESS
T ss_pred HHhccCCceeccccccceeeecccccccccc---------eeeccccccC-ccCHHHHHHhhhhhhcccccccccccccc
Confidence 8899999999999999877655444432211 2222322111 10110 11 12345555544 6
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccc
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPK 293 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~ 293 (433)
++|++|.+++.+++++|+++|++|++++++|+++..+.............. .....+.+.+| +..|.+.|+++...
T Consensus 138 ~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~g~~~~~~~~~~ 213 (343)
T d1m6sa_ 138 HNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAG--YADSVMFCLSK--GLCAPVGSVVVGDR 213 (343)
T ss_dssp BTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHH--TCSEEEEESSS--TTCCSSCEEEEECH
T ss_pred cccCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccccccchhhhcc--ccccccccccc--cccccccccccccH
Confidence 789999999999999999999999999999999986543321111111111 11122333333 33566678888777
Q ss_pred cccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCCccEE
Q 045431 294 ELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAPYV 372 (433)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~ 372 (433)
+.+ ..............+.....++....... ......+...++...+.+.+.+. +.....+..++++
T Consensus 214 ~~~--------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 282 (343)
T d1m6sa_ 214 DFI--------ERARKARKMLGGGMRQAGVLAAAGIIALT---KMVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMV 282 (343)
T ss_dssp HHH--------HHHHHHHHHHTCCCSSTHHHHHHHHHHHH---HSSTTHHHHHHHHHHHHHHHHHHTCBCCGGGCCSSEE
T ss_pred HHH--------hhhHhhCcccccccchhHHHHHhhhhhhh---hhHHHHHHHHHHHHHhhhHHHHhccCccCCCCCceEE
Confidence 764 33333332222223333322222221100 01122233445555666666665 3444445678899
Q ss_pred EEECCC--CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhhC
Q 045431 373 WVQFPG--RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 373 ~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l~ 433 (433)
|+++++ ....++...|.++ ||.+.|. +++++||++ ..++++|++++++|+++++
T Consensus 283 ~~~~~~~~~~a~~l~~~L~~~-Gi~v~~~------~~~~iRi~~~~~~t~edid~~v~~l~~v~~ 340 (343)
T d1m6sa_ 283 ILRTDNLKVNAHGFIEALRNS-GVLANAV------SDTEIRLVTHKDVSRNDIEEALNIFEKLFR 340 (343)
T ss_dssp EEECTTSSSCHHHHHHHHHHH-TEECEEE------ETTEEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCcccHHHHHHHHHHC-CCEEecC------CCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 999873 4556777776655 9999874 356899985 4589999999999999863
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.87 E-value=2.3e-20 Score=173.23 Aligned_cols=326 Identities=12% Similarity=0.026 Sum_probs=199.1
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-H
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-L 142 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l 142 (433)
+.++|++.+ ..+..|++++|+.++.. .....|+......++|+.+|+++ +. +..+++|+|++++... +
T Consensus 3 ~~~~f~s~n-~~g~~P~v~~A~~~a~~-----~~~~~~~~~~~~~~l~~~la~~~----g~-~~~v~f~~sGt~An~~a~ 71 (345)
T d1v72a1 3 PALGFSSDN-IAGASPEVAQALVKHSS-----GQAGPYGTDELTAQVKRKFCEIF----ER-DVEVFLVPTGTAANALCL 71 (345)
T ss_dssp CCCBCSCGG-GCCCCHHHHHHHHHTTS-----SCCCSTTCSHHHHHHHHHHHHHH----TS-CCEEEEESCHHHHHHHHH
T ss_pred CCcCcCCCC-CCCCCHHHHHHHHHHhc-----cCccccCCCHHHHHHHHHHHHHH----CC-CcEEEECCchHHHHHHHH
Confidence 467888644 34667889999988653 34456777778889999999998 65 3578999999999886 6
Q ss_pred HHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CC----C----CCCccEE-EEc
Q 045431 143 QIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LS----T----VARTDII-FFC 212 (433)
Q Consensus 143 ~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~----~~~~~~i-~l~ 212 (433)
..++.+++.+++....+.............+ .....++.+.+.....+ ++ . ...+..+ +..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 142 (345)
T d1v72a1 72 SAMTPPWGNIYCHPASHINNDECGAPEFFSN---------GAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSI 142 (345)
T ss_dssp HTSCCTTEEEEECTTSHHHHSSTTHHHHHTT---------SCEEEECCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEE
T ss_pred HHHHhcCCccccccccceeeechhhHHHhcC---------cccccccccccccccHHHhhhhhcccccccccccceeeee
Confidence 7778889998888888777655443333221 13334433322221111 11 0 1233333 344
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecc
Q 045431 213 SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIP 292 (433)
Q Consensus 213 ~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~ 292 (433)
++.|++|...+.++++++.++|++||++++.|+++..........++.......+......+.+|..+ .. .+.....
T Consensus 143 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~ 219 (345)
T d1v72a1 143 TQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGV-LA--AEAIVLF 219 (345)
T ss_dssp ESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTC-SS--CEEEEES
T ss_pred eccccccccccchhhhhHHHHHHhcCceeeecccccceeccccccCHHHhhccccccccccCcccccc-cc--ccccccc
Confidence 77889999999999999999999999999999999764332212222111111122233334444332 22 2222222
Q ss_pred ccccccCCcchhHHHHH-HHhhccCCCcHHHH-HHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCCc
Q 045431 293 KELLFSDGFPVAKDFNR-IVCTCFNGASNISQ-AGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNA 369 (433)
Q Consensus 293 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~q-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g 369 (433)
.... ...... .............. .++...+.+ ....+......++...+.+.+.++ |+.+..|..+
T Consensus 220 ~~~~-------~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~~~ 289 (345)
T d1v72a1 220 NTSL-------ATEMSYRRKRAGHLSSKMRFLSAQIDAYLTD---DLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEA 289 (345)
T ss_dssp SGGG-------HHHHHHHHHHTTCCCSSTHHHHHHHHHHTST---THHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCS
T ss_pred hhhh-------hhhccccccccccccchhhHHhhhhHHHHHH---hhhhhhccchhhHHHHHHHHHHhcCCcEeccCCCc
Confidence 2221 111221 12222222222222 222223332 223455556667777778888887 7888888888
Q ss_pred cEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHh
Q 045431 370 PYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHL 431 (433)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~ 431 (433)
++++++++ .+..+.|+++ |+.+.++ +.+++.+||++ ++|+|||+++++.|+++
T Consensus 290 niv~~~~~----~~~~~~L~~~-gi~v~~~----~~~~~~lR~~~~~~~T~edid~~le~lr~a 344 (345)
T d1v72a1 290 NILFCRLD----SAMIDALLKA-GFGFYHD----RWGPNVVRFVTSFATTAEDVDHLLNQVRLA 344 (345)
T ss_dssp SEEEEEEC----HHHHHHHHHT-TCBCBCS----SSSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred cEEEEEcC----HHHHHHHHHc-CCCcccc----CCCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 99999986 3456666665 9988654 23568999995 56899999999999875
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.82 E-value=5.7e-18 Score=157.21 Aligned_cols=321 Identities=13% Similarity=0.086 Sum_probs=199.7
Q ss_pred CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEE
Q 045431 75 EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMA 153 (433)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl 153 (433)
.+.|+.|++++.+. ....++ ....++-+.+.+.+.+-++.+.+.+++++|++.++++ +..++.+||+|+
T Consensus 9 ~~v~~~V~~am~~~--------~~~hr~--~~f~~i~~~~~~~l~~ll~~~~~~i~~~gsgT~a~e~~~~nl~~~g~~vl 78 (348)
T d1iuga_ 9 VRLHPKALEALARP--------QLHHRT--EAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFAPGERVL 78 (348)
T ss_dssp CCCCHHHHHHHHSC--------CCCTTS--HHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCCTTCEEE
T ss_pred CCCCHHHHHHhcCC--------CCCCCC--HHHHHHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHhcccccccce
Confidence 46788888877552 222221 1222333333333333336777788899999999997 688999999999
Q ss_pred EeCCCChhh--hhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHH
Q 045431 154 VQDPSYPAY--VDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLV 231 (433)
Q Consensus 154 ~~~p~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~ 231 (433)
+...++.+. ...++.++ ..+..+..+....+..+.....+++++++++..+.||+..+ +++|.
T Consensus 79 v~~~G~f~~~~~~~a~~~~------------~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~h~eTstG~~~~---i~~i~ 143 (348)
T d1iuga_ 79 VPVYGKFSERFYEIALEAG------------LVVERLDYPYGDTPRPEDVAKEGYAGLLLVHSETSTGALAD---LPALA 143 (348)
T ss_dssp EEECSHHHHHHHHHHHHTT------------CEEEEEECCTTCCCCTTTSCCSSCSEEEEESEETTTTEECC---HHHHH
T ss_pred eecchHHHHHHHHHHHhcC------------cccccccccCCCccccccccccCCCeeEEEecchhhhhhcc---HHHHH
Confidence 988886553 33444444 25555555443333333334578889999899999999999 66777
Q ss_pred HHHHHcC--CEEEEeccccccccCCCCCcccccCCCCcceEEEecccccc-cccccceeeeeccccccccCCc-----ch
Q 045431 232 QFAKDNG--SIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYA-GFTGVRLGWTVIPKELLFSDGF-----PV 303 (433)
Q Consensus 232 ~~a~~~~--~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~-~~~G~r~G~l~~~~~~~~~~~~-----~~ 303 (433)
++|++|+ .++++|.+.+.... +.++... +..+++.|..|.+ |.|| +|+++++++.+.+..+ .+
T Consensus 144 ~~~~~~~~~~l~~vDavss~g~~---~i~~d~~----~iD~~~~~sqK~l~gppG--~~~v~~s~~~le~~~~~~~~~dl 214 (348)
T d1iuga_ 144 RAFKEKNPEGLVGADMVTSLLVG---EVALEAM----GVDAAASGSQKGLMCPPG--LGFVALSPRALERLKPRGYYLDL 214 (348)
T ss_dssp HHHHHHCTTCEEEEECTTTBTTB---CCCSGGG----TCSEEEEESSSTTCCCSC--EEEEEECHHHHHTCCCCSSTTCH
T ss_pred HHHHhhhccceeechhhhccccc---ccccccc----cCCEEEeccccceecCCc--eeeeeechHHHhhhcccccccch
Confidence 7777774 78889998873211 3333332 2238888889988 7677 7999999887643211 11
Q ss_pred hHHHHHHH-hhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCc-cEEEEECC-CCC
Q 045431 304 AKDFNRIV-CTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNA-PYVWVQFP-GRS 380 (433)
Q Consensus 304 ~~~~~~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g-~~~~~~~~-~~~ 380 (433)
...+.... ....++++.....+..++|+....+ .++..+..+..++.+...+++.|+...+.... ....+.+| +.+
T Consensus 215 ~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~~-~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~s~~v~~~~~P~g~~ 293 (348)
T d1iuga_ 215 ARELKAQKEGESAWTPAINLVLAVAAVLEEVLPR-LEEHLALKAWQNALLYGVGEEGGLRPVPKRFSPAVAAFYLPEGVP 293 (348)
T ss_dssp HHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHTTCEESCSSBCTTCEEEECCTTCC
T ss_pred hhhhhhhccCcccccccchHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHhhhhhhhhhccChhhcCCeEEEEECCCCCC
Confidence 11122111 2223345555555555555422112 23333344444555666666778877643322 24678887 566
Q ss_pred hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhhC
Q 045431 381 SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 381 ~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l~ 433 (433)
..++...+ +++|+.+.+|.. +-....|||+. ..+.++++.+++.|+++|+
T Consensus 294 ~~~~~~~l-~~~gi~i~~G~~--~l~~~~~RIg~mG~~~~~d~~~~~~~l~~~l~ 345 (348)
T d1iuga_ 294 YARVKEAF-AQRGAVIAGGQG--PLKGKVFRLSLMGAYDRYEALGVAGMFREVLE 345 (348)
T ss_dssp HHHHHHHH-HTTTEECEECCG--GGTTTEEEECCCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHCCeEEEcCcc--ccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 67766655 567999988853 33346899994 3589999999999998863
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=1.9e-19 Score=170.80 Aligned_cols=329 Identities=14% Similarity=0.133 Sum_probs=205.1
Q ss_pred EEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCC--CCCCHHHHHHHHHHHhccCCCCCC-cEEEcCChHHHHHH-
Q 045431 66 ISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA--EQGEKPLRAAIASTFYKDLGIEEG-DIFVSDGAKCDISR- 141 (433)
Q Consensus 66 i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~la~~l~~~~~~~~~-~i~~~~G~~~al~~- 141 (433)
+-|+-| +.+.|+.+++++.. ......++ .....+.|+.+++.+ +++.+ .|+++.|++.++++
T Consensus 21 ~l~~pG--P~~~~~~Vl~am~~--------~~i~HRs~~f~~i~~ea~~~l~~ll----g~~~~~~ii~~gsgT~a~~~~ 86 (388)
T d1h0ca_ 21 LLLGPG--PSNLPPRIMAAGGL--------QMIGSMSKDMYQIMDEIKEGIQYVF----QTRNPLTLVISGSGHCALEAA 86 (388)
T ss_dssp EECSSS--CCCCCHHHHHHHTC--------CCCCTTSHHHHHHHHHHHHHHHHHH----TCCCSEEEEESSCHHHHHHHH
T ss_pred ccccCC--CCCCCHHHHHHhCc--------CCCCCCCHHHHHHHHHHHHHHHHHh----CCCCCcEEEEcCcHHHHHHHH
Confidence 335555 34578888877643 11221111 122455566666665 77543 69999999999997
Q ss_pred HHHhcCCCCEEEEeCCCChhhhhhH--HHhCCcccccccccccceEEEeecCccCCcccC-CC---CCCCccEEEEcCCC
Q 045431 142 LQIVFGSNVTMAVQDPSYPAYVDSS--VIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LS---TVARTDIIFFCSPN 215 (433)
Q Consensus 142 l~~l~~~gd~Vl~~~p~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~i~l~~p~ 215 (433)
+..++.+|+++++...++.+..... ...+. ....+..+.......+ .+ ...+++++++++.+
T Consensus 87 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 154 (388)
T d1h0ca_ 87 LVNVLEPGDSFLVGANGIWGQRAVDIGERIGA------------RVHPMTKDPGGHYTLQEVEEGLAQHKPVLLFLTHGE 154 (388)
T ss_dssp HHHHCCSSCCEEECBSSHHHHHHHHHHHHHC--------------CBCCBCCTTCCCCHHHHHHHHHHHCCSEEEEESEE
T ss_pred HHHhhccCCceeeecccceeeeeccccccccc------------cccccccCCccccchHHHHHHhccCCcceEEEeeee
Confidence 6888999999999998887754332 22231 2333333322222111 11 12578899999999
Q ss_pred CccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccc
Q 045431 216 NPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKEL 295 (433)
Q Consensus 216 nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~ 295 (433)
|.||+..+ +++|.++|++||+++++|.+++.... +..+... +..+++.|..|+++ +.-.+|+++.++..
T Consensus 155 n~tG~i~p---i~~i~~~~~~~g~~~~vD~~qs~g~~---~~d~~~~----~~D~~~~s~~K~~~-gp~g~~~~~~~~~~ 223 (388)
T d1h0ca_ 155 SSTGVLQP---LDGFGELCHRYKCLLLVDSVASLGGT---PLYMDRQ----GIDILYSGSQKALN-APPGTSLISFSDKA 223 (388)
T ss_dssp TTTTEECC---CTTHHHHHHTTTCEEEEECTTTTTTS---CCCTTTT----TCSEEEEESSSTTC-CCTTCEEEEECHHH
T ss_pred eccccccC---HHHHHHHhhcccccceeccccccccc---ccccccc----ccceeccccccccc-CCCceEEEeecHHH
Confidence 99999988 78889999999999999999884221 2333222 33488889999886 33347788777655
Q ss_pred cccCC------cc---hhHHHHHHH------hhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcC
Q 045431 296 LFSDG------FP---VAKDFNRIV------CTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLG 360 (433)
Q Consensus 296 ~~~~~------~~---~~~~~~~~~------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 360 (433)
+.... .. ......... ......++.....+..+++.......++...++.++..+.+++.+++.|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~g 303 (388)
T d1h0ca_ 224 KKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALG 303 (388)
T ss_dssp HHHHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhhhccccccccccccchhhhhhhhccccccccccccHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHhhcC
Confidence 31100 00 000011100 0111223444433333433321112357777888888889999998887
Q ss_pred CeeecCC----CccEEEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe-e--ccChhHHHHHHHHHHHhh
Q 045431 361 FKVYGGK----NAPYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS-A--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 361 ~~~~~~~----~g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~-~--~~~~~~l~~~l~~l~~~l 432 (433)
+....+. ....+.+.+| +.+..++...+++++||.+..|... ...+.|||| + +++.+|++.++++|+++|
T Consensus 304 ~~~~~~~~~~rs~~i~~~~~p~~~~~~~~~~~L~~~~gI~v~~G~~~--~~~~~iRis~~g~~~t~edid~li~aL~~~L 381 (388)
T d1h0ca_ 304 LQLFVKDPALRLPTVTTVAVPAGYDWRDIVSYVIDHFDIEIMGGLGP--STGKVLRIGLLGCNATRENVDRVTEALRAAL 381 (388)
T ss_dssp CCBSSCSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECEECCGG--GTTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred cccccCCHHHcCCeEEEEECCCCCCHHHHHHHHHhcCCEEEeCCchh--hcCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 6553322 2335677886 5678888899888889999988643 235689999 5 457899999999999987
Q ss_pred C
Q 045431 433 K 433 (433)
Q Consensus 433 ~ 433 (433)
+
T Consensus 382 ~ 382 (388)
T d1h0ca_ 382 Q 382 (388)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.81 E-value=3.8e-18 Score=160.04 Aligned_cols=319 Identities=12% Similarity=0.084 Sum_probs=200.1
Q ss_pred CCCChHHHHHHHHHHHhhcccCCCCCCCC--CCCCCHHHHHHHHHHHhccCCCCCCc--EEEcCChHHHHHH-HHHhcCC
Q 045431 74 TEPIPEVITSALAKRSYALSTQEGYSGYG--AEQGEKPLRAAIASTFYKDLGIEEGD--IFVSDGAKCDISR-LQIVFGS 148 (433)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~--~~~g~~~lr~~la~~l~~~~~~~~~~--i~~~~G~~~al~~-l~~l~~~ 148 (433)
+.+.|+.|++++.+. ..+.++ ...-..+.|+.+++++ ++++++ |++|+|+|.++++ +..+..+
T Consensus 8 P~~~~~~V~~A~~~~--------~~~~~~~~~~~~~~~~r~~l~~l~----~~~~~~~~i~~t~s~T~~~~~~~~~l~~~ 75 (361)
T d1m32a_ 8 PLTTSRTVKEAMLFD--------SCTWDDDYNIGVVEQIRQQLTALA----TASEGYTSVLLQGSGSYAVEAVLGSALGP 75 (361)
T ss_dssp SCCCCHHHHHTTCCC--------CCTTSHHHHTTTHHHHHHHHHHHH----CSSSSEEEEEEESCHHHHHHHHHHHSCCT
T ss_pred CCCCCHHHHHHhhhh--------ccCCCcHHHHHHHHHHHHHHHHHh----CCCCCCEEEEECCCHHHHHHHHHHHhhhh
Confidence 456778887765432 122221 1345678899999988 887765 7788899999997 6788888
Q ss_pred CCEEEEeCCCChhh--hhhHHHhCCcccccccccccceEEEeecCccCCcccCC-----CCCCCccEEEEcCCCCccccC
Q 045431 149 NVTMAVQDPSYPAY--VDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDL-----STVARTDIIFFCSPNNPTGAA 221 (433)
Q Consensus 149 gd~Vl~~~p~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~l~~p~nPtG~~ 221 (433)
++.+++....+... .......+. ....+..........+. ...++++++.+++.+|-||..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tG~~ 143 (361)
T d1m32a_ 76 QDKVLIVSNGAYGARMVEMAGLMGI------------AHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGML 143 (361)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHTC------------CEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEE
T ss_pred ccccceeeehhhhhhHHHHhhhhhc------------ccccccccccCCccchhhHHHHHhccCccceEEEeeecccccc
Confidence 88777766655442 222233332 22222222221111111 124688999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccc-ccccceeeeeccccccccCC
Q 045431 222 ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAG-FTGVRLGWTVIPKELLFSDG 300 (433)
Q Consensus 222 ~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~-~~G~r~G~l~~~~~~~~~~~ 300 (433)
++ +++|.++|++||+++++|.+++.... +..+..+ +..+++.|.+|+++ .+| +|+++++++.+....
T Consensus 144 ~~---i~~i~~~~~~~g~~~~vDa~qs~G~~---~~d~~~~----~~D~~~~s~~K~l~gp~G--~g~l~~~~~~~~~~~ 211 (361)
T d1m32a_ 144 NP---IDEVGALAHRYGKTYIVDAMSSFGGI---PMDIAAL----HIDYLISSANKCIQGVPG--FAFVIAREQKLAACK 211 (361)
T ss_dssp CC---HHHHHHHHHHHTCEEEEECTTTTTTS---CCCTTTT----TCSEEEEESSSTTCCCSS--EEEEEEEHHHHTTCT
T ss_pred hh---hhhhhhhhcccceeeEeecccccCcc---ccccccc----ccceEEeeecccccCCCC--ceEEEechhhhhhhc
Confidence 98 78888999999999999999984321 3333333 34588999999884 335 899988876653211
Q ss_pred cch-------hHH---HHHHHhhccCCCcHHHHHHHHHhcCcCChh-HHHHHHHHHHHHHHHHHHHHhhcCCeeecCC--
Q 045431 301 FPV-------AKD---FNRIVCTCFNGASNISQAGGLACLSPEGFK-AVHEVIGFYKENTDIIVETFNSLGFKVYGGK-- 367 (433)
Q Consensus 301 ~~~-------~~~---~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-- 367 (433)
+.. ... ..........+++.....+....+.....+ ..+...++.+...+.+.+.++..|+....+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 291 (361)
T d1m32a_ 212 GHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDEL 291 (361)
T ss_dssp TCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGG
T ss_pred cccccccccchhhhccccccccccCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhcCCcccCChhh
Confidence 100 000 111111222345555555555554422112 3456666777777888888888876654332
Q ss_pred -CccEEEEECC---CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 368 -NAPYVWVQFP---GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 368 -~g~~~~~~~~---~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
+...+.+.+| .....++...|.+ .||.+.+|.. ...+.+||+. +.+++|+++++++|+++|
T Consensus 292 rs~~v~~~~~p~~~~~~~~~~~~~l~~-~gi~i~~G~~---~~~~~~Ris~~g~~~~~di~~lv~al~~~L 358 (361)
T d1m32a_ 292 HSPIITAFYSPEDPQYRFSEFYRRLKE-QGFVIYPGKV---SQSDCFRIGNIGEVYAADITALLTAIRTAM 358 (361)
T ss_dssp BCSSEEEEECCCCTTCCHHHHHHHHHH-TTEECEECCC---SSSCEEEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCCCHHHHHHHHHH-CCcEEECCCc---CCCCEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 2234456665 2345666666654 5999988853 3457899994 568999999999999986
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.80 E-value=2.4e-18 Score=163.99 Aligned_cols=337 Identities=12% Similarity=0.072 Sum_probs=196.9
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCC-CCC--CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSG-YGA--EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDIS 140 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-Y~~--~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~ 140 (433)
+.|.|..+... +.|..+.+++.+.+.+......... +.. ..-..+.|+.+|+++ ++++++|++|+++++++.
T Consensus 27 ~~iYLd~as~g-~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~ll----ga~~~ei~~~~~~T~~~~ 101 (404)
T d1qz9a_ 27 GVIYLDGNSLG-ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLI----GARDGEVVVTDTTSINLF 101 (404)
T ss_dssp TCEECCTTTSC-CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTT----TCCTTSEEECSCHHHHHH
T ss_pred CCEEcCCcccc-cCCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHh----CCCCCcEEEecCchHHHH
Confidence 47888777643 5788889999998764321011100 000 112235677777776 999999999999999987
Q ss_pred H-HHH------hcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcC
Q 045431 141 R-LQI------VFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCS 213 (433)
Q Consensus 141 ~-l~~------l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~ 213 (433)
. +.. ...+++.|++.+-.+++........+.+..+ ..+..........+.. ...+++++|.+++
T Consensus 102 ~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~--~i~~~T~lV~i~~ 172 (404)
T d1qz9a_ 102 KVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQ-------QGYTLRLVDSPEELPQ--AIDQDTAVVMLTH 172 (404)
T ss_dssp HHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHC-------SSCEEEEESSGGGHHH--HCSTTEEEEEEES
T ss_pred HHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhhhheeee-------eceeccccccchhHHH--hcCCCceEEEEec
Confidence 5 322 1368888888777776654343333321110 0111111111101110 1147899999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccc
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPK 293 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~ 293 (433)
.+|.||+.++ +++|+++|+++|+++++|.+++.... +..+.... ..+++.|.+|+++.+..-.|+++.++
T Consensus 173 v~~~tG~~~p---v~~i~~~~~~~~~~~~vD~~q~~g~~---~~~~~~~~----~d~~~~s~~K~~~~~~g~~g~~~~~~ 242 (404)
T d1qz9a_ 173 VNYKTGYMHD---MQALTALSHECGALAIWDLAHSAGAV---PVDLHQAG----ADYAIGCTYKYLNGGPGSQAFVWVSP 242 (404)
T ss_dssp BCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTTS---CCCHHHHT----CSEEEECSSSTTCCCTTCCCEEEECT
T ss_pred ccccccceec---HHHHhccccccccceeEEeecccccc---cccccccc----ceEEEEechhhcccCCceEEEEEech
Confidence 9999999999 88899999999999999999984322 33333332 23788899998853333367887776
Q ss_pred cccccCCc------------------chhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHH
Q 045431 294 ELLFSDGF------------------PVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVET 355 (433)
Q Consensus 294 ~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 355 (433)
..+..... .................+.....++...+...+...+++...........+.+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 322 (404)
T d1qz9a_ 243 QLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQ 322 (404)
T ss_dssp TTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhCCccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHh
Confidence 65411000 000000111111111112223334445555555444444444444444444444
Q ss_pred Hhh-cCCeeecCCC----ccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee---ccChhHHHHHHHH
Q 045431 356 FNS-LGFKVYGGKN----APYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA---FGHRGNVLEACKR 427 (433)
Q Consensus 356 l~~-~g~~~~~~~~----g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~---~~~~~~l~~~l~~ 427 (433)
+.. .|+.++.|.. +.++.+.++ ++.++.+.|. ++||.+.. ..++.||||+ +++++|++++++.
T Consensus 323 ~~~~~~~~i~~p~~~~~r~~~vsf~~~--~~~~v~~~L~-~~gi~~~~------r~~~~lRiS~~h~ynt~~did~~~~~ 393 (404)
T d1qz9a_ 323 RCAAHELTLVTPREHAKRGSHVSFEHP--EGYAVIQALI-DRGVIGDY------REPRIMRFGFTPLYTTFTEVWDAVQI 393 (404)
T ss_dssp HHTTSCCEECSCSSGGGBCSEEEEECT--THHHHHHHHH-TTTEECEE------ETTTEEEEECCTTTCCHHHHHHHHHH
T ss_pred hccCCCEEEECCCCccceeeEEEEecC--CHHHHHHHHH-HCCCEEee------cCCCeEEEECCCCCCCHHHHHHHHHH
Confidence 443 3888875532 345666666 4666666654 56996521 1246899995 4789999999999
Q ss_pred HHHhhC
Q 045431 428 FKHLYK 433 (433)
Q Consensus 428 l~~~l~ 433 (433)
|+++|+
T Consensus 394 L~~vl~ 399 (404)
T d1qz9a_ 394 LGEILD 399 (404)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999873
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.76 E-value=1.4e-17 Score=157.04 Aligned_cols=324 Identities=11% Similarity=0.055 Sum_probs=198.1
Q ss_pred CCChHHHHHHHHHHHhhcccCCCCCCCCC--CCCCHHHHHHHHHHHhccCCCC-CCcEEEcCChHHHHHH-HHHhcCCCC
Q 045431 75 EPIPEVITSALAKRSYALSTQEGYSGYGA--EQGEKPLRAAIASTFYKDLGIE-EGDIFVSDGAKCDISR-LQIVFGSNV 150 (433)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~la~~l~~~~~~~-~~~i~~~~G~~~al~~-l~~l~~~gd 150 (433)
.+.|+.|++++.. ...+.++. ..-..+.|+.+++.+ +++ ...|++++|++.++++ +..++.+|+
T Consensus 27 ~~v~~~Vl~am~~--------~~~~hr~~ef~~i~~~~r~~l~~ll----~~~~~~~i~~~g~gT~~~~~~~~~~~~~~~ 94 (377)
T d1vjoa_ 27 SNAHPSVLQAMNV--------SPVGHLDPAFLALMDEIQSLLRYVW----QTENPLTIAVSGTGTAAMEATIANAVEPGD 94 (377)
T ss_dssp CCCCHHHHHHHSS--------CCCCTTSHHHHHHHHHHHHHHHHHH----TCCCSCEEEESSCHHHHHHHHHHHHCCTTC
T ss_pred CCCCHHHHHHhCc--------CCCCCCCHHHHHHHHHHHHHHHHHh----CCCCCeEEEEcCcHHHHHHHHHHhcccccc
Confidence 4578888776533 22233322 123455555555555 775 4577788888999997 688899999
Q ss_pred EEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCC-C---CCCCccEEEEcCCCCccccCCCHHH
Q 045431 151 TMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDL-S---TVARTDIIFFCSPNNPTGAAATREQ 226 (433)
Q Consensus 151 ~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~i~l~~p~nPtG~~~~~~~ 226 (433)
++++..-.+............. .....+..........+. . ...+++++.+++.+|.||+..+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~--- 161 (377)
T d1vjoa_ 95 VVLIGVAGYFGNRLVDMAGRYG----------ADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQP--- 161 (377)
T ss_dssp EEEEEESSHHHHHHHHHHHHTT----------CEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---
T ss_pred ccceeeechhhhhhhhhhhhhc----------ccccccccCCCCcccchhhhhhhhcCcceeeeeeeeeccceeeec---
Confidence 9998887776543222222111 123333332222211111 1 1357788888888999999988
Q ss_pred HHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccC-------
Q 045431 227 LTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSD------- 299 (433)
Q Consensus 227 ~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~------- 299 (433)
+++|.++|+++|+++++|.+++.... +..+..+ +..+++.|.+|.++ ++-.+|+++.++..+...
T Consensus 162 i~~i~~~~~~~g~~~~vDa~~~~g~~---~~~~~~~----~~d~~~~s~~K~~~-gp~g~~~~~~~~~~~~~~~~~~~~~ 233 (377)
T d1vjoa_ 162 LEGVGELCREFGTLLLVDTVTSLGGV---PIFLDAW----GVDLAYSCSQKGLG-CSPGASPFTMSSRAIEKLQRRRTKV 233 (377)
T ss_dssp CTTHHHHHHHHTCEEEEECTTTTTTS---CCCTTTT----TCSEEECCSSSTTC-SCSSCEEEEECHHHHHHHHTCSSCC
T ss_pred hhhhhhhhhhccceEEEecchhhhhh---hhccccc----ccceeeeccccccc-CCCEEEEecchhhHHhhhhccCCCC
Confidence 78899999999999999999973211 3333332 23477888899875 444577777776654110
Q ss_pred --CcchhHHHHH--HHhhccCC-CcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCC---CccE
Q 045431 300 --GFPVAKDFNR--IVCTCFNG-ASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGK---NAPY 371 (433)
Q Consensus 300 --~~~~~~~~~~--~~~~~~~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~---~g~~ 371 (433)
.......... .......+ ++.....+...+.........+...++.+++.+.+.+.+.+.++....+. ....
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~rs~~v 313 (377)
T d1vjoa_ 234 ANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPTL 313 (377)
T ss_dssp SCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSE
T ss_pred cceeeccchhhhccCcccccccccceechhhhHHHHhhhhhcCchHHHHHHHHHhhhhhhhhhccCceeecChHhcCCeE
Confidence 0000000000 01111122 22222222223322122234577788888888999999988876654321 2335
Q ss_pred EEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe-e--ccChhHHHHHHHHHHHhhC
Q 045431 372 VWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS-A--FGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 372 ~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~-~--~~~~~~l~~~l~~l~~~l~ 433 (433)
+.+.++ +.+..++...|++++||.+..|... ...+.||++ + +++.+++++++++|+++|+
T Consensus 314 ~~~~~p~~~~~~~l~~~L~~~~gI~v~~G~~~--~~~~~~Ris~~g~~~t~edi~~lv~al~~~l~ 377 (377)
T d1vjoa_ 314 TTVCIPDGVDGKAVARRLLNEHNIEVGGGLGE--LAGKVWRVGLMGFNSRKESVDQLIPALEQVLR 377 (377)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHCEECEECCGG--GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhcCCEEEecCccc--ccCCEEEEecCcCCCCHHHHHHHHHHHHHHhC
Confidence 567776 5678888888888889999887643 235689999 4 3478999999999999885
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=4.6e-17 Score=155.33 Aligned_cols=348 Identities=8% Similarity=0.031 Sum_probs=204.3
Q ss_pred HhcCCCCceEEecCCC--CCCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCC-CCCcEEEc
Q 045431 57 MLKYPDAEVISLGIGD--TTEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGI-EEGDIFVS 132 (433)
Q Consensus 57 ~~~~~~~~~i~l~~g~--~~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~-~~~~i~~~ 132 (433)
....+++..||+..|. ..+. .+|.+.+++.+++.+... ...+ ....+....+++.+....+- ..+.++++
T Consensus 34 l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~---~~~~---~~~~~~~~~la~~l~~~~p~~~~~~v~f~ 107 (425)
T d1sffa_ 34 VWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSH---TCFQ---VLAYEPYLELCEIMNQKVPGDFAKKTLLV 107 (425)
T ss_dssp EEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSC---CCTT---TEECHHHHHHHHHHHHHSSCSSCEEEEEE
T ss_pred EEeCCCCEEEEcCcCHHhhcccCCcHHHHHHHHHHHhhcCC---cccc---cccCcHHHHHHHHHHhhhhhcccceeeee
Confidence 3445677899987663 3333 689999999999876421 1111 11233444555555542332 24689999
Q ss_pred CChHHHHHH-H--HHhcCCCCEEEEeCCCChhhhhhHHHh-CCcccccccccc-cceEEEee--cCccCCcccC------
Q 045431 133 DGAKCDISR-L--QIVFGSNVTMAVQDPSYPAYVDSSVIM-GQTGEFQKDAEK-YGKIEYMR--CTAENGFFPD------ 199 (433)
Q Consensus 133 ~G~~~al~~-l--~~l~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~------ 199 (433)
++++++... + ........+|+..+.+|++.......+ |........... -......+ ..........
T Consensus 108 ~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (425)
T d1sffa_ 108 TTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIH 187 (425)
T ss_dssp SSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHH
T ss_pred ccccchhhhHHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHHH
Confidence 999999875 3 222334567888888888865544443 321111100000 00111111 1111100000
Q ss_pred ----CCC-CCCccEEEEcCC-CCcccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEE
Q 045431 200 ----LST-VARTDIIFFCSP-NNPTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIET 272 (433)
Q Consensus 200 ----~~~-~~~~~~i~l~~p-~nPtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i 272 (433)
... ..++.+ ++..| +...|. ..+++.+++|.++|++||+++|.||++.++...+.......++-.+| +
T Consensus 188 ~~~~~~~~~~~vaa-vi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~a~~~~gv~PD----i 262 (425)
T d1sffa_ 188 RIFKNDAAPEDIAA-IVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPD----L 262 (425)
T ss_dssp HHHHHTCCGGGEEE-EEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCS----E
T ss_pred HHHHhcccccceEE-EEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhhHHHhcCCCcc----c
Confidence 001 123444 44566 444564 56889999999999999999999999998766555443333433355 3
Q ss_pred ecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHH
Q 045431 273 SSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDII 352 (433)
Q Consensus 273 ~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 352 (433)
-+++|.+| .|+.+|.+++++++. +.+......++++.++++.+++.+.|+.... +...++.++..+++
T Consensus 263 ~~~gK~l~-gG~P~~av~~~~~i~--------~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~---~~~~~~~~~~g~~l 330 (425)
T d1sffa_ 263 TTFAKSIA-GGFPLAGVTGRAEVM--------DAVAPGGLGGTYAGNPIACVAALEVLKVFEQ---ENLLQKANDLGQKL 330 (425)
T ss_dssp EEECGGGG-TSSCCEEEEEEHHHH--------TTSCTTSBCCSSSSCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHH
T ss_pred eecccccC-CCcceEEEEEcHHHH--------HhhCCCCCCCCCCcCHHHHHHHHHHHHHHHH---hhhhhhhhhhhhhh
Confidence 36899998 899999999998875 2233334556677889999999988873322 22233333333444
Q ss_pred ----HHHHhhcCCee-ecCCCccEEEEECCC-----C-C---hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe--ecc
Q 045431 353 ----VETFNSLGFKV-YGGKNAPYVWVQFPG-----R-S---SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS--AFG 416 (433)
Q Consensus 353 ----~~~l~~~g~~~-~~~~~g~~~~~~~~~-----~-~---~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~ 416 (433)
.+.++++++.. +. ..|.++.+.+.. . + ...+...++++ ||.+.++.. ..+.+|++ +..
T Consensus 331 ~~~l~~~~~~~~~v~~vr-g~Gl~~~i~f~~~~~~~~~~~~~~~~~~~~l~~~-Gvl~~~~g~----~~n~i~~~PpL~i 404 (425)
T d1sffa_ 331 KDGLLAIAEKHPEIGDVR-GLGAMIAIELFEDGDHNKPDAKLTAEIVARARDK-GLILLSCGP----YYNVLRILVPLTI 404 (425)
T ss_dssp HHHHHHHHHTCTTEEEEE-EETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHT-TEECEEEST----TSCEEEECCCTTC
T ss_pred hhhhhhhHhhCCceEEEE-ccccEEEEEEeccCccCCccHHHHHHHHHHHHHC-CCEEeccCC----CCCEEEEECCCCC
Confidence 44444444322 22 245555565531 1 1 23455555554 999987532 23679998 467
Q ss_pred ChhHHHHHHHHHHHhhC
Q 045431 417 HRGNVLEACKRFKHLYK 433 (433)
Q Consensus 417 ~~~~l~~~l~~l~~~l~ 433 (433)
++++|++++++|+++++
T Consensus 405 t~~eid~~l~~l~~al~ 421 (425)
T d1sffa_ 405 EDAQIRQGLEIISQCFD 421 (425)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999998863
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=1.6e-17 Score=157.02 Aligned_cols=341 Identities=8% Similarity=0.020 Sum_probs=209.3
Q ss_pred HhcCCCCceEEecCCCC--CC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcC
Q 045431 57 MLKYPDAEVISLGIGDT--TE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSD 133 (433)
Q Consensus 57 ~~~~~~~~~i~l~~g~~--~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~ 133 (433)
....+++..||+..|.- .+ ..+|.+.+++.+++.+... ...+....-...+.+.+++.. ..+.+++++
T Consensus 35 l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Av~~q~~~~~~---~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~ 105 (404)
T d2byla1 35 LWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTL---TSRAFYNNVLGEYEEYITKLF------NYHKVLPMN 105 (404)
T ss_dssp EEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCC---CCTTEEESSHHHHHHHHHHHH------TCSEEEEES
T ss_pred EEECCCCEEEEecCCHHHHhhcCCCHHHHHHHHHHHhhCCC---cccccccchHHHHHHhhhhcc------ccccccccc
Confidence 34556778999876542 22 3678999999999876421 112112222334444444432 347899999
Q ss_pred ChHHHHHHHHHhc-----------CCCCEEEEeCCCChhhhhhHHHhCCccc-ccccccccceEEEeecCccCCcccCCC
Q 045431 134 GAKCDISRLQIVF-----------GSNVTMAVQDPSYPAYVDSSVIMGQTGE-FQKDAEKYGKIEYMRCTAENGFFPDLS 201 (433)
Q Consensus 134 G~~~al~~l~~l~-----------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (433)
+++++......+. ....+++...-+|++............. ...++........+|.++...+...+
T Consensus 106 sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~~d~~~l~~~l- 184 (404)
T d2byla1 106 TGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERAL- 184 (404)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECTTCHHHHHHHH-
T ss_pred CccccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEecccCHHHHHHhc-
Confidence 9999987632211 1234677777777654332222221111 11122222334445543211111111
Q ss_pred CCCCccEEEEcCC-CCccc-cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccc
Q 045431 202 TVARTDIIFFCSP-NNPTG-AAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYA 279 (433)
Q Consensus 202 ~~~~~~~i~l~~p-~nPtG-~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~ 279 (433)
..+++.+|+ ..| +...| ...+++.+++|.++|++||+++|.||++.+|...+.......+.-.+| ++ +++|.+
T Consensus 185 ~~~~iAavi-iEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~a~~~~gv~PD-i~---~~gK~l 259 (404)
T d2byla1 185 QDPNVAAFM-VEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPD-IV---LLGKAL 259 (404)
T ss_dssp TSTTEEEEE-ECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCS-EE---EECGGG
T ss_pred CCCCeEEEE-ECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccccchhhhcCCCCC-EE---EECchh
Confidence 124555555 467 44456 556788999999999999999999999998866665444444433355 22 799999
Q ss_pred cccc-cceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhh
Q 045431 280 GFTG-VRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNS 358 (433)
Q Consensus 280 ~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 358 (433)
+ .| +.+|.+++++++. +.+......++++.++++.+++.+.|+.... +++.++.++..+++.+.|++
T Consensus 260 ~-gG~~p~~av~~~~~i~--------~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~---~~l~~~~~~~g~~l~~~l~~ 327 (404)
T d2byla1 260 S-GGLYPVSAVLCDDDIM--------LTIKPGEHFSTYGGNPLGCRVAIAALEVLEE---ENLAENADKLGIILRNELMK 327 (404)
T ss_dssp G-TTSSCCEEEEECHHHH--------TTSCTTSSCCSSTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHT
T ss_pred h-CCCccceeeeechhhh--------hccCCCCCCcCCCcCHHHHHHHHHHHHHHHh---cCchhhhhHhhHHHHHHHHh
Confidence 8 66 7999999998874 3333334556667889999988888873222 34455666667777777776
Q ss_pred cC---CeeecCCCccEEEEECC---CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe--eccChhHHHHHHHHHHH
Q 045431 359 LG---FKVYGGKNAPYVWVQFP---GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS--AFGHRGNVLEACKRFKH 430 (433)
Q Consensus 359 ~g---~~~~~~~~g~~~~~~~~---~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~ 430 (433)
+. +.-+.. .|++..+.+. .....++..+++++ ||.+.+. +.+.+|++ +..+++++++++++|++
T Consensus 328 l~~~~i~~vRg-~Gl~~~i~~~~~~~~~~~~~~~~l~~~-Gvl~~~~------~~~~i~l~PpL~it~~~id~~~~~l~~ 399 (404)
T d2byla1 328 LPSDVVTAVRG-KGLLNAIVIKETKDWDAWKVCLRLRDN-GLLAKPT------HGDIIRFAPPLVIKEDELRESIEIINK 399 (404)
T ss_dssp SCTTTEEEEEE-ETTEEEEEECCCSSCCHHHHHHHHHHT-TEECEEE------ETTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred hccccceeeee-cccEEEEEEecCCchhHHHHHHHHHhC-CeEEecC------CCCEEEEECCcCCCHHHHHHHHHHHHH
Confidence 52 211222 3555555554 33555677777655 9999763 23679999 56799999999999998
Q ss_pred hh
Q 045431 431 LY 432 (433)
Q Consensus 431 ~l 432 (433)
+|
T Consensus 400 al 401 (404)
T d2byla1 400 TI 401 (404)
T ss_dssp HH
T ss_pred HH
Confidence 86
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=99.74 E-value=8e-17 Score=151.35 Aligned_cols=343 Identities=12% Similarity=0.101 Sum_probs=216.3
Q ss_pred HhcCCCCceEEecCC--CCCCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcC
Q 045431 57 MLKYPDAEVISLGIG--DTTEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSD 133 (433)
Q Consensus 57 ~~~~~~~~~i~l~~g--~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~ 133 (433)
..+.+++..||+..| ...+. .+|.+.+++.+++.+... ..+ .-..+.+..+++.+........+.+++++
T Consensus 31 l~d~dG~~ylD~~~g~~~~~lGh~hp~v~~a~~~~~~~~~~----~~~---~~~~~~~~~la~~l~~~~~~~~~~v~f~~ 103 (387)
T d1vefa1 31 VWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMA----MPQ---TLPTPMRGEFYRTLTAILPPELNRVFPVN 103 (387)
T ss_dssp EEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCC----CCT---TSCCHHHHHHHHHHHHTSCTTEEEEEEES
T ss_pred EEECCCCEEEEcchhHHhhhhcCCcHHHHHHHHHHHHhhcc----ccc---ccCCchHHHHHHHhhhhccccceeecccc
Confidence 334567789998654 33343 679999999999876321 111 11235566666665543333446799999
Q ss_pred ChHHHHHH-H--HHhcCCCCEEEEeCCCChhhhhhHHHhCCc-ccccccccccceEEEeecCccCCcccCCCCCCCccEE
Q 045431 134 GAKCDISR-L--QIVFGSNVTMAVQDPSYPAYVDSSVIMGQT-GEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDII 209 (433)
Q Consensus 134 G~~~al~~-l--~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 209 (433)
++++|+.. + ........+|+....+|++........+.. .....+.+...++..+|.++...+...+ .+++.+|
T Consensus 104 sGseA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~~d~~~l~~~~--~~~iAav 181 (387)
T d1vefa1 104 SGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAV--DEETAAV 181 (387)
T ss_dssp SHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHC--CTTEEEE
T ss_pred CchHHHHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCCCCHHHHHHhc--CCCeEEE
Confidence 99999886 3 222344578888888888765444443322 1111122222345566654321111111 2455554
Q ss_pred EEcCC-CCcccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccccccee
Q 045431 210 FFCSP-NNPTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLG 287 (433)
Q Consensus 210 ~l~~p-~nPtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G 287 (433)
+ ..| +...|. ..+++.+++|.++|++||+++|.||++.+|...|.......++-.+| +-+++|.++ .|+.++
T Consensus 182 i-~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~~~v~PD----i~~~gK~l~-gG~~~~ 255 (387)
T d1vefa1 182 I-LEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPD----ILTLAKALG-GGVPLG 255 (387)
T ss_dssp E-ECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCS----EEEECGGGG-TTSSCE
T ss_pred E-EECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCcccccCCcCCc----eeeecccCC-CCcccc
Confidence 4 467 444565 46789999999999999999999999998866655443334433355 336899998 888888
Q ss_pred eeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcC---Ceee
Q 045431 288 WTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLG---FKVY 364 (433)
Q Consensus 288 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g---~~~~ 364 (433)
.+++.++++ ..+......++.+.++++.+++.+.|+.... .+..+++++..+++.+.|+++. +.-+
T Consensus 256 ~~~~~~~~~--------~~~~~~~~g~T~~gnPla~aaa~a~L~~l~~---~~~~~~v~~~g~~l~~~L~~l~~~~v~~v 324 (387)
T d1vefa1 256 VAVMREEVA--------RSMPKGGHGTTFGGNPLAMAAGVAAIRYLER---TRLWERAAELGPWFMEKLRAIPSPKIREV 324 (387)
T ss_dssp EEEEEHHHH--------HTSCTTSSCCSSTTCHHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHHHTSCCTTEEEE
T ss_pred ccccceeee--------eccccCCccccCCCCcchhhhcccchhhccc---ccccchHhhhhHHHHHHHHhcCCCceEEE
Confidence 888877764 3333334456667789999998888763221 4445666777778888887752 2112
Q ss_pred cCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe--eccChhHHHHHHHHHHHhhC
Q 045431 365 GGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS--AFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 365 ~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l~ 433 (433)
. ..|++..+.+.......+ ..++.++|+.+.+. +.+.+|++ +..+++++++++++++++|.
T Consensus 325 r-g~Gl~~~ie~~~~~~~~~-~~~~~~~g~l~~~~------g~~~ir~~Ppl~it~~~ld~~~~~i~~aLS 387 (387)
T d1vefa1 325 R-GMGLMVGLELKEKAAPYI-ARLEKEHRVLALQA------GPTVIRFLPPLVIEKEDLERVVEAVRAVLA 387 (387)
T ss_dssp E-EETTEEEEEESSCSHHHH-HHHHHHHCEECEES------STTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred e-ecceEEEEEEeCCchHHH-HHHHHHCCCeEEec------CCCEEEEECCccCCHHHHHHHHHHHHHHhC
Confidence 2 235666777775444444 44444558877642 24679998 56799999999999999874
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=7.2e-16 Score=146.68 Aligned_cols=349 Identities=9% Similarity=-0.012 Sum_probs=210.2
Q ss_pred HHHHhcCCCCceEEecCCCC--CCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEE
Q 045431 54 AAHMLKYPDAEVISLGIGDT--TEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIF 130 (433)
Q Consensus 54 ~~~~~~~~~~~~i~l~~g~~--~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~ 130 (433)
+......+++..||+..|.- .+. .+|.+.+++.+++.+... .....+. .....++.+.+.+. .+.+.+.++
T Consensus 34 G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~-~~~~~~~-~~~~~~l~~~l~~~----~~~~~~~v~ 107 (429)
T d1s0aa_ 34 GCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSH-VMFGGIT-HAPAIELCRKLVAM----TPQPLECVF 107 (429)
T ss_dssp BTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSC-CCCSSEE-CHHHHHHHHHHHHH----SCTTCCEEE
T ss_pred CCEEEECCCCEEEECcccHHHHhhcCCcHHHHHHHHHHHHhcCC-cccCCcc-chHHHHHHHHHHhh----hccCcceee
Confidence 33344556778999977643 333 689999999999876421 1111221 11223333333333 245567899
Q ss_pred EcCChHHHHHH-HHH--hc-----CCCCEEEEeCCCChhhhhhHHHh-CCccccccc-ccccceEEEeecCccC-CcccC
Q 045431 131 VSDGAKCDISR-LQI--VF-----GSNVTMAVQDPSYPAYVDSSVIM-GQTGEFQKD-AEKYGKIEYMRCTAEN-GFFPD 199 (433)
Q Consensus 131 ~~~G~~~al~~-l~~--l~-----~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~ 199 (433)
+++++++|... +.. .. .+..+|+....+|++........ +........ +.........|..... ....+
T Consensus 108 f~~sGseA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (429)
T d1s0aa_ 108 LADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWD 187 (429)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCC
T ss_pred eccccccchhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccccccccc
Confidence 99999999875 311 11 33467888888887754333222 211111111 1111112222221110 00011
Q ss_pred ---CCC--------CCCccEEEEcCC--CCcccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCC
Q 045431 200 ---LST--------VARTDIIFFCSP--NNPTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGA 265 (433)
Q Consensus 200 ---~~~--------~~~~~~i~l~~p--~nPtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~ 265 (433)
++. ..++.+++ ..| ++-.|. ..|++.+++|.++|++||+++|.||++.+|...+.......++-.
T Consensus 188 ~~~~~~~~~~~~~~~~~iaavi-vEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~~~~~~~v~ 266 (429)
T d1s0aa_ 188 ERDMVGFARLMAAHRHEIAAVI-IEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIA 266 (429)
T ss_dssp GGGGHHHHHHHHHHTTTEEEEE-ECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCC
T ss_pred hhhhhhhhhhhhhcCCccceee-ecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhccccccccccccccccceec
Confidence 110 23455545 456 455554 568999999999999999999999999988666654444444433
Q ss_pred CcceEEEecccccccccccceeeeeccccccccCCcchhHHHHH-----HHhhccCCCcHHHHHHHHHhcCcCChhHHHH
Q 045431 266 KEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNR-----IVCTCFNGASNISQAGGLACLSPEGFKAVHE 340 (433)
Q Consensus 266 ~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~ 340 (433)
+| +-+++|.++-.++.+|.+++++++. +.+.. +...++.+.++++.+++.+.|+.... ++
T Consensus 267 PD----i~~~gK~l~gG~~p~~av~~~~~i~--------~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~i~~---~~ 331 (429)
T d1s0aa_ 267 PD----ILCLGKALTGGTMTLSATLTTREVA--------ETISNGEAGCFMHGPTFMGNPLACAAANASLAILES---GD 331 (429)
T ss_dssp CS----EEEECGGGGTSSSCCEEEEECHHHH--------HHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHT---CH
T ss_pred cc----ccccccccccccccccchhhHHHHH--------hccCCCCCcceeecCCCCCCcccchhhhcccccccc---cc
Confidence 55 2357999973448999999998874 33332 12345666889999988888873222 34
Q ss_pred HHHHHHHHHHHHHHHHhhc----CCeeecCCCccEEEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe--
Q 045431 341 VIGFYKENTDIIVETFNSL----GFKVYGGKNAPYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS-- 413 (433)
Q Consensus 341 ~~~~~~~~~~~l~~~l~~~----g~~~~~~~~g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~-- 413 (433)
..++.++..+++.+.|+++ .+.-+.. .|+++.+++. +.....+...+++ +|+.+.+. .+.+|++
T Consensus 332 ~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg-~Gl~~~~e~~~~~~~~~~~~~~~~-~Gl~~~~~-------g~~i~~~Pp 402 (429)
T d1s0aa_ 332 WQQQVADIEVQLREQLAPARDAEMVADVRV-LGAIGVVETTHPVNMAALQKFFVE-QGVWIRPF-------GKLIYLMPP 402 (429)
T ss_dssp HHHHHHHHHHHHHHHHGGGGGCTTEEEEEE-ETTEEEEEESSCBCHHHHHHHHHH-TTEECCCB-------TTEEEECCC
T ss_pred ccchhhHHHHHHHHHHHHhccCCceEEEee-cccEEEEEecCcccHHHHHHHHHH-CCcEEEec-------CCEEEEeCC
Confidence 5566666777777777664 2222222 4566777776 3345556666555 59999763 2579998
Q ss_pred eccChhHHHHHHHHHHHhhC
Q 045431 414 AFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 414 ~~~~~~~l~~~l~~l~~~l~ 433 (433)
+..++++|++++++|.++++
T Consensus 403 l~it~~eid~~~~~l~~al~ 422 (429)
T d1s0aa_ 403 YIILPQQLQRLTAAVNRAVQ 422 (429)
T ss_dssp TTCCHHHHHHHHHHHHHHTS
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 56799999999999999874
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.74 E-value=1.9e-16 Score=144.82 Aligned_cols=338 Identities=14% Similarity=0.143 Sum_probs=224.7
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCC--CCCCCCCCHHHHHHHH-HHHhccCCCCCCcEEEcCChHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYS--GYGAEQGEKPLRAAIA-STFYKDLGIEEGDIFVSDGAKCDIS 140 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~Y~~~~g~~~lr~~la-~~l~~~~~~~~~~i~~~~G~~~al~ 140 (433)
..|+|--.++ ..++.+++++...+..... .++. .|..-.-.-+.-|.+| +...+.+++.-.+|...||+.+.+.
T Consensus 24 ~~l~LiaSEN--~~S~~v~~a~~S~l~nkya-eG~pg~ryy~G~~~id~iE~la~~ra~~lF~a~~anVqp~SGs~An~a 100 (405)
T d1kl1a_ 24 AKIELIASEN--FVSRAVMEAQGSVLTNKYA-EGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMA 100 (405)
T ss_dssp HSEECCTTCC--CCCHHHHHHHTSGGGGCCC-CEETTEESSSCCHHHHHHHHHHHHHHHHHHCCSEEECCCSSHHHHHHH
T ss_pred cCceEeccCC--cCCHHHHHHhcCcccCcCc-CCCCCccccCCchhHHHHHHHHHHHHHHHhCCCcceeeccCchHHHHH
Confidence 3588877765 3578888888887754221 1111 2222111233333344 3333455777778899999999999
Q ss_pred HHHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC------CCCccEEEEcCC
Q 045431 141 RLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST------VARTDIIFFCSP 214 (433)
Q Consensus 141 ~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~l~~p 214 (433)
.+.++++|||+|+..++...++......... .....+.+.++++++.+ ..|+++ ..+|++|++-.-
T Consensus 101 v~~all~pGD~im~l~l~~GGHlshg~~~~~-------~g~~~~~~~y~~d~~~~-~ID~d~l~~~a~~~kPklIi~G~S 172 (405)
T d1kl1a_ 101 VYFTVLEHGDTVLGMNLSHGGHLTHGSPVNF-------SGVQYNFVAYGVDPETH-VIDYDDVREKARLHRPKLIVAAAS 172 (405)
T ss_dssp HHHHHCCTTCEEEEECGGGTCCGGGTCTTSH-------HHHHSEEEEECBCTTTC-SBCHHHHHHHHHHHCCSEEEECCS
T ss_pred HHHHhcCCCCEEEEeecccccccccCccccc-------cceEEEEEEeccchhcc-cccHHHHHHHHHhhCcceEEeccc
Confidence 9999999999999999888776543221111 11124777788876543 444432 368998887544
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccc-cccCCC-CCcccccCCCCcceEEEecccccccccccceeeeecc
Q 045431 215 NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYAL-YISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIP 292 (433)
Q Consensus 215 ~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~-~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~ 292 (433)
.+|.= ++ .+++.++|++.|.+++.|-+|.. +...+. |.|+ .. .| ++.+|.+|+| +|-|-|.++++
T Consensus 173 ~y~r~--~d---~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~-~~---aD--vvt~tThKtl--rGPrgg~I~~~ 239 (405)
T d1kl1a_ 173 AYPRI--ID---FAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPV-PY---AH--FVTTTTHKTL--RGPRGGMILCQ 239 (405)
T ss_dssp SCCSC--CC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST-TT---CS--EEEEESSSTT--CCCSCEEEEEC
T ss_pred ccccc--cC---hHHHHHHHhhhCCEEecchhhHhhhhhhhhcCChh-hh---hh--heeccccccc--cCCCCceEEec
Confidence 45442 33 78889999999999999999864 555553 4444 22 12 7788999998 78899999998
Q ss_pred ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-hHHHHHHHHHHHHHHHHHHHHhhcCCeeec-CCCcc
Q 045431 293 KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-KAVHEVIGFYKENTDIIVETFNSLGFKVYG-GKNAP 370 (433)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~-~~~g~ 370 (433)
+++ .+.+.+.......+.+.+...|+.+.-..+.. ...+...+++.++++.|.+.|.+.|+.+.. .....
T Consensus 240 ~~~--------~~~i~~avfPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~G~~vv~ggTd~H 311 (405)
T d1kl1a_ 240 EQF--------AKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTLVSGGTDNH 311 (405)
T ss_dssp HHH--------HHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSS
T ss_pred chh--------HHHHHhhhCcccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCceeecCCCccc
Confidence 776 36666655555555556666555443322211 345778888999999999999999999874 34556
Q ss_pred EEEEECCC-CChHHHHHHHHHcCCeEec----CCCCCCCCCCCeEEEee------ccChhHHHHHHHHHHHhhC
Q 045431 371 YVWVQFPG-RSSWDVFSEILEKTHVVTT----PGSGFGPGGEGFIRVSA------FGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 371 ~~~~~~~~-~~~~~~~~~l~~~~gi~v~----~g~~f~~~~~~~iRi~~------~~~~~~l~~~l~~l~~~l~ 433 (433)
.+|+++.+ ......+..+|++.||.+. |++.-.+..++.|||.. ...++|+++..+.|.++++
T Consensus 312 ~vlvdl~~~~~~g~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~ 385 (405)
T d1kl1a_ 312 LLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLK 385 (405)
T ss_dssp EEEEECGGGTCCHHHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred eeeccccccCCcHHHHHHHHHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 79999862 2344556677788899986 44432233356899994 2368999999998888763
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.73 E-value=1.1e-16 Score=151.39 Aligned_cols=322 Identities=14% Similarity=0.115 Sum_probs=191.6
Q ss_pred CCChHHHHHHHHHHHhhcccCCCCCCCCC--CCCCHHHHHHHHHHHhccCCCCCCc-EEEcCChHHHHHH-HHHhcCCCC
Q 045431 75 EPIPEVITSALAKRSYALSTQEGYSGYGA--EQGEKPLRAAIASTFYKDLGIEEGD-IFVSDGAKCDISR-LQIVFGSNV 150 (433)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~la~~l~~~~~~~~~~-i~~~~G~~~al~~-l~~l~~~gd 150 (433)
...++.|++|+.+ ...+.++. ..-..+.|+.+++.+ +++..+ |+++.|++.++++ +..++.+|+
T Consensus 26 ~~~~~~V~~Am~~--------~~~~hr~~ef~~i~~~~r~~L~~ll----~~~~~~~i~~~gsgT~a~ea~~~~l~~~~~ 93 (388)
T d2ch1a1 26 SNCSKRVLTAMTN--------TVLSNFHAELFRTMDEVKDGLRYIF----QTENRATMCVSGSAHAGMEAMLSNLLEEGD 93 (388)
T ss_dssp CCCCHHHHHHTTS--------CCCCTTCHHHHHHHHHHHHHHHHHH----TCCCSCEEEESSCHHHHHHHHHHHHCCTTC
T ss_pred CCCCHHHHHHhCc--------CCCCCCCHHHHHHHHHHHHHHHHHh----CCCCCeEEEEcCcHHHHHHHHHHHhccccc
Confidence 3467888776533 22233322 123345555555555 665444 5677788999997 688899999
Q ss_pred EEEEeCCCChhhhhh--HHHhCCcccccccccccceEEEeecCccCCcccC-C---CCCCCccEEEEcCCCCccccCCCH
Q 045431 151 TMAVQDPSYPAYVDS--SVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-L---STVARTDIIFFCSPNNPTGAAATR 224 (433)
Q Consensus 151 ~Vl~~~p~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~i~l~~p~nPtG~~~~~ 224 (433)
+|++....+.+.... ....+. ..+.+...+....... . ....+++++++++.+|.||...+
T Consensus 94 ~vl~~~~g~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~~- 160 (388)
T d2ch1a1 94 RVLIAVNGIWAERAVEMSERYGA------------DVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQP- 160 (388)
T ss_dssp EEEEEESSHHHHHHHHHHHHTTC------------EEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC-
T ss_pred cccccccccccccchhhhhhhcc------------cccccccccccccchhhhhhhhccCCcceeeeeecccccccccc-
Confidence 999988877665432 333342 4444444333222211 1 11357888888888999999998
Q ss_pred HHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecccccccc------
Q 045431 225 EQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFS------ 298 (433)
Q Consensus 225 ~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~------ 298 (433)
.++|.++|+++|+++++|.+.+... .+..+..+ +..+++.|-.|.++ +.-.+|+++.++..+..
T Consensus 161 --~~~i~~~~~~~~~~~~vD~~ss~g~---~pid~~~~----~~d~~~~s~~K~~~-gp~G~g~~~~~~~~~~~~~~~~~ 230 (388)
T d2ch1a1 161 --LEGVGQICHQHDCLLIVDAVASLCG---VPFYMDKW----EIDAVYTGAQKVLG-APPGITPISISPKALDVIRNRRT 230 (388)
T ss_dssp --CTTHHHHHHHTTCEEEEECTTTBTT---BCCCTTTT----TCCEEECCCC-CCC-CCSSCEEEEECHHHHHHHHTCSS
T ss_pred --hhhhcchhccccceeeeeeeecccc---cccchhcc----CceEEEEccccccC-CCCeEEEEeccHHHHHhhhcccC
Confidence 6778888899999999999988432 13333322 33478888899875 33347888887665411
Q ss_pred CCcchhHHHHHH---------HhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecC---
Q 045431 299 DGFPVAKDFNRI---------VCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGG--- 366 (433)
Q Consensus 299 ~~~~~~~~~~~~---------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~--- 366 (433)
............ .......++.....++...++...........++.+.........+...++....+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (388)
T d2ch1a1 231 KSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPR 310 (388)
T ss_dssp CCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGG
T ss_pred ccccccccchhhhhhhcccccccccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhcccccccCCHH
Confidence 000000000000 00112233333333333443321112234444444555555555565554443222
Q ss_pred -CCccEEEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe-e--ccChhHHHHHHHHHHHhhC
Q 045431 367 -KNAPYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS-A--FGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 367 -~~g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~-~--~~~~~~l~~~l~~l~~~l~ 433 (433)
.....+.+.+| +.+..++...|.+++||.+.+|... ...+.|||+ + +++.|+++.+++.|+++|+
T Consensus 311 ~rs~~v~~~~~p~g~~~~~l~~~l~~~~gI~v~~G~~~--~~~~~~RIs~~g~~~t~edI~~ll~alke~L~ 380 (388)
T d2ch1a1 311 HRLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGP--TFGKAWRVGIMGECSTVQKIQFYLYGFKESLK 380 (388)
T ss_dssp GBCTTEEEEECCTTCCHHHHHHHHHHHHCBCCBCCCGG--GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH
T ss_pred HhCCeEEEEECCCCCCHHHHHHHHhhcCCEEEeCCCcc--ccCCEEEEcCCcCCCCHHHHHHHHHHHHHHHH
Confidence 13345678887 6677888888888889999998643 234689999 5 3478999999999999874
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=4.7e-16 Score=142.93 Aligned_cols=339 Identities=15% Similarity=0.110 Sum_probs=220.0
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCC--CCCCCCCCHHHHHHHHHHH-hccCCCCCCcEEEcCChHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYS--GYGAEQGEKPLRAAIASTF-YKDLGIEEGDIFVSDGAKCDIS 140 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~Y~~~~g~~~lr~~la~~l-~~~~~~~~~~i~~~~G~~~al~ 140 (433)
+.|+|--.++ -.++.+++++...+..... .++. +|....-.-+.-|.+|.-. .+.+++.-.+|...||+++.+.
T Consensus 27 ~~i~LiaSEN--~~S~~v~~a~~S~l~nkYa-eG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~a~~anVqp~SGs~AN~a 103 (416)
T d1dfoa_ 27 EHIELIASEN--YTSPRVMQAQGSQLTNKYA-EGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQANFA 103 (416)
T ss_dssp HSEECCTTCC--CCCHHHHHHHTSGGGGCCC-CEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHH
T ss_pred cCceEecCcc--cCCHHHHHHhcCcccCccc-CCCCCCcccCCChhHHHHHHHHHHHHHHHhCCCcceeecccCccHHHH
Confidence 3588877775 3678888888887753321 2222 2322111224444444333 3355777778889999999998
Q ss_pred HHHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC------CCCccEEEEcCC
Q 045431 141 RLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST------VARTDIIFFCSP 214 (433)
Q Consensus 141 ~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~l~~p 214 (433)
.+.++++|||+|+..++.+.++.......+.. ..+.+.+.++++.++ ..|++. ..++++|+.-.-
T Consensus 104 v~~All~pGD~Il~l~l~~GGHlshg~~~~~~-------g~~~~~~~y~~d~~~--~IDyd~l~~~a~~~kPklIi~G~S 174 (416)
T d1dfoa_ 104 VYTALLEPGDTVLGMNLAHGGHLTHGSPVNFS-------GKLYNIVPYGIDATG--HIDYADLEKQAKEHKPKMIIGGFS 174 (416)
T ss_dssp HHHHHCCTTCEEEEECTTTTCCGGGTCTTSHH-------HHHSEEEEECBCSSS--SBCHHHHHHHHHHHCCSEEEEECS
T ss_pred HHHHhcCCCCeeeecccccccccccccccccc-------CceEEEEecccCCcc--CccHHHHHHHHHHhccceEEeccc
Confidence 89999999999999999998876543322211 112466777776532 244332 358998887544
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccc-cccCCC-CCcccccCCCCcceEEEecccccccccccceeeeecc
Q 045431 215 NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYAL-YISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIP 292 (433)
Q Consensus 215 ~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~-~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~ 292 (433)
.+| ..++ .+++.++|.+.|.+++.|.+|.. +...+. +.|+.. . .++.+|++|+| +|.|-|.++++
T Consensus 175 ~y~--r~~d---~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~~----a--Dvvt~tThKtl--rGPrggiI~~~ 241 (416)
T d1dfoa_ 175 AYS--GVVD---WAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPH----A--HVVTTTTHKTL--AGPRGGLILAK 241 (416)
T ss_dssp SCC--SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTTT----S--SEEEEESSSTT--CCCSCEEEEES
T ss_pred ccc--cccC---HHHHHHHHHhcCceEEcchhhhhcceeccccCCcccc----c--ceeeeehhhcc--cCCCceEEEec
Confidence 443 3344 78888999999999999999864 555443 344422 1 28889999998 78899999986
Q ss_pred ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcC-ChhHHHHHHHHHHHHHHHHHHHHhhcCCeeec-CCCcc
Q 045431 293 KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPE-GFKAVHEVIGFYKENTDIIVETFNSLGFKVYG-GKNAP 370 (433)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~-~~~g~ 370 (433)
...- .+.+.+.+.......+.+.+...|+.+.-..+ .....+...+++.++++.|.+.|.+.|+.++. .....
T Consensus 242 ~~~~-----~~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~G~~iv~ggTdnH 316 (416)
T d1dfoa_ 242 GGSE-----ELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNH 316 (416)
T ss_dssp SCCH-----HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSS
T ss_pred cchH-----hHHHHHHhhhCcccccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhCCcccccCCCCCc
Confidence 4320 01345555444444444555555444332222 22345778889999999999999999999874 34556
Q ss_pred EEEEECCC-CChHHHHHHHHHcCCeEec----CCCCCCCCCCCeEEEee------ccChhHHHHHHHHHHHhh
Q 045431 371 YVWVQFPG-RSSWDVFSEILEKTHVVTT----PGSGFGPGGEGFIRVSA------FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 371 ~~~~~~~~-~~~~~~~~~l~~~~gi~v~----~g~~f~~~~~~~iRi~~------~~~~~~l~~~l~~l~~~l 432 (433)
.+++++.+ ..+...+..++++.||.++ |++.-.+..++.|||+. ...++|+++..+-|.+++
T Consensus 317 lvlvdl~~~~~~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l 389 (416)
T d1dfoa_ 317 LFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVL 389 (416)
T ss_dssp EEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred eeEEEecccCCCHHHHHHHHHHcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 78899862 2245566677788899985 44322233456899994 226899999988887765
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=99.71 E-value=2.4e-15 Score=143.66 Aligned_cols=351 Identities=10% Similarity=0.022 Sum_probs=202.6
Q ss_pred hcCCCCceEEecCC--CCCCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCC
Q 045431 58 LKYPDAEVISLGIG--DTTEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDG 134 (433)
Q Consensus 58 ~~~~~~~~i~l~~g--~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G 134 (433)
...+++..||+..| ...+. .+|++.+++.+++.+... ....+ ..+.+..+|+.|.+...-..+.++++++
T Consensus 36 ~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~--~~~~~-----~~~~~~~la~~L~~~~~~~~~~v~f~~s 108 (431)
T d1zoda1 36 YDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDH--LFSEM-----LSRPVVDLATRLANITPPGLDRALLLST 108 (431)
T ss_dssp ECTTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCC--CCTTC-----CCHHHHHHHHHHHHHSCTTCCEEEEESC
T ss_pred EECCCCEEEEcccCHHhhhhcCCCHHHHHHHHHHHhhccc--ccccc-----ccHHHHHHHHHHHHhCCcccceeeeccc
Confidence 34567789999665 33333 679999999999987431 11122 1233345555554422334579999999
Q ss_pred hHHHHHH-H--HHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCC--ccc--------CCC
Q 045431 135 AKCDISR-L--QIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENG--FFP--------DLS 201 (433)
Q Consensus 135 ~~~al~~-l--~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--------~~~ 201 (433)
+++|... + .......++|+...-+|++........+........+........++...... ... +++
T Consensus 109 GseA~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (431)
T d1zoda1 109 GAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELD 188 (431)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHH
T ss_pred ccchHHHHHHHHHHhcCCcceeecccccccccchhhcccccccccccCCcccCceeeeeecccccccccccchhhhhhHH
Confidence 9999886 4 22234557888888888887655544443222222222222333333221100 000 000
Q ss_pred ---------CCCCccEEEEcCC-CCcccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceE
Q 045431 202 ---------TVARTDIIFFCSP-NNPTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAI 270 (433)
Q Consensus 202 ---------~~~~~~~i~l~~p-~nPtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi 270 (433)
...++.+ ++..| +.-.|. ..|++.+++|.++|++||+++|.||++.++...+.......+.-.+|
T Consensus 189 ~~~~~~~~~~~~~iAa-vi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~~~~gv~PD--- 264 (431)
T d1zoda1 189 YAFDLIDRQSSGNLAA-FIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPD--- 264 (431)
T ss_dssp HHHHHHHHHCCSCEEE-EEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCS---
T ss_pred HHHHHHHHhccccccc-eeeccccccCCccCCCHHHHHHHHHHHHhcCceEEeccccccccccccccccccCCCCcc---
Confidence 0123444 44567 333454 46889999999999999999999999998766665443333433345
Q ss_pred EEecccccccccccceeeeeccccccccCCcchhHHHHH--HHhhccCCCcHHHHHHHHHhcCcCCh-hHHHHHHHHHHH
Q 045431 271 ETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNR--IVCTCFNGASNISQAGGLACLSPEGF-KAVHEVIGFYKE 347 (433)
Q Consensus 271 ~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~ 347 (433)
+-+++|.++ .|+.++.+++.++.. ..... ....++.+.++++.+++.+.++.... ..+++..+.-+.
T Consensus 265 -i~~~gK~l~-gG~p~~av~~~~~~~--------~~~~~~~~~~~~T~~g~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~ 334 (431)
T d1zoda1 265 -ILTLSKTLG-AGLPLAAIVTSAAIE--------ERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDR 334 (431)
T ss_dssp -EEEECHHHH-TTSSCEEEEECHHHH--------HHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred -hhccccccc-cccccceeeeeecch--------hhhhcccccccCCCCCCcchHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 336899998 889999888887764 33222 12345566788888888877663222 122332222222
Q ss_pred HHHHHHHHHhhcCCee-ecCCCccEEEEECC--------C-CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe--ec
Q 045431 348 NTDIIVETFNSLGFKV-YGGKNAPYVWVQFP--------G-RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS--AF 415 (433)
Q Consensus 348 ~~~~l~~~l~~~g~~~-~~~~~g~~~~~~~~--------~-~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~ 415 (433)
..+.+.+.+.++++.. +.. .|.++-+.+. . .....+...+++ +|+....-. .+...+.||++ +.
T Consensus 335 l~~~l~~~~~~~~~i~~vrG-~Glm~~ie~~~~~~~~~~~~~~~~~i~~~~~~-~Gl~~~~~~--~~~~~~~i~l~Ppl~ 410 (431)
T d1zoda1 335 LRRGLLDLMERFDCIGDVRG-RGLLLGVEIVKDRRTKEPADGLGAKITRECMN-LGLSMNIVQ--LPGMGGVFRIAPPLT 410 (431)
T ss_dssp HHHHHHHHHHHCTTEEEEEE-ETTEEEEEEEEETTTTEECTTHHHHHHHHHHH-TTEECCEEC--CTTSCCEEEECCCTT
T ss_pred HhhhhhhhhhcCCCeEEEee-cceEEEEEEecCCcccCccHHHHHHHHHHHHH-hCcccCeee--ecCCCCEEEEECCCC
Confidence 3333444444444322 222 3455445442 1 112445556555 488642211 12235689998 56
Q ss_pred cChhHHHHHHHHHHHhhC
Q 045431 416 GHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 416 ~~~~~l~~~l~~l~~~l~ 433 (433)
.+++++++++++|.++++
T Consensus 411 it~~eid~~~~~l~~al~ 428 (431)
T d1zoda1 411 VSEDEIDLGLSLLGQAIE 428 (431)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 799999999999998863
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.70 E-value=2.5e-15 Score=138.93 Aligned_cols=214 Identities=15% Similarity=0.152 Sum_probs=145.9
Q ss_pred CCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHHHHhcCCCCEEEEeCCCChhhhhhHHHhCCc-ccccccccccce
Q 045431 106 GEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQT-GEFQKDAEKYGK 184 (433)
Q Consensus 106 g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~-~~~~~~~~~~~~ 184 (433)
....|.+.||+.- + .+..++++++++|+.++..++++||+|++..+.|.+....++..-.+ | ..
T Consensus 50 t~~~le~~la~LE----~--~~~a~~fsSGMaAisall~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~g---------i~ 114 (380)
T d1ibja_ 50 TRDALESLLAKLD----K--ADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSG---------VV 114 (380)
T ss_dssp HHHHHHHHHHHHH----T--CSEEEEESSHHHHHHHHHTTSCTTCEEEEESSCCHHHHHHHHHTSGGGT---------CE
T ss_pred HHHHHHHHHHHHc----C--CceEEehhhHHHHHHHHHHhhCCCCEEEEEecccccccchhhhhhcccc---------cc
Confidence 3456666666653 2 35567777778999888899999999999999999988777654322 2 25
Q ss_pred EEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCC
Q 045431 185 IEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPG 264 (433)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 264 (433)
+.++.....+.+... ..+++++||+-+|.|||..+.+ +++|+++|+++|+++|+|+.++.-.. ..|+ .+
T Consensus 115 ~~~~d~~~~~~~~~a--i~~~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~g~~~vVDnT~atP~~---~~Pl-~~-- 183 (380)
T d1ibja_ 115 VKRVNTTKLDEVAAA--IGPQTKLVWLESPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMSPVL---SRPL-EL-- 183 (380)
T ss_dssp EEEECTTSHHHHHHH--CCSSEEEEEECSSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTCTTT---CCGG-GT--
T ss_pred ccccCcchHHHHHHH--hccCccEEEecccccccccccc---HHHHHHHHHHcCCeEEeecccccccc---cccc-cc--
Confidence 555544322122111 1468999999999999999999 88888999999999999999874211 1122 11
Q ss_pred CCcceEEEeccccccccccc-ceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHH
Q 045431 265 AKEVAIETSSFSKYAGFTGV-RLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIG 343 (433)
Q Consensus 265 ~~~~vi~i~S~sK~~~~~G~-r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~ 343 (433)
+-.|++.|.+|.++-.+= =.|.++++.+.+ .+.+...........++.....+.+-++ .+..+.+
T Consensus 184 --GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~-------~~~~~~~~~~~G~~l~p~~a~ll~rgl~-----Tl~lRm~ 249 (380)
T d1ibja_ 184 --GADIVMHSATKFIAGHSDVMAGVLAVKGEKL-------AKEVYFLQNSEGSGLAPFDCWLCLRGIK-----TMALRIE 249 (380)
T ss_dssp --TCSEEEEETTTTTTCSSCCCCEEEEECSHHH-------HHHHHHHHHHTTCBCCHHHHHHHHHHHT-----THHHHHH
T ss_pred --CCCEEEecccceeccccCccccccccchhhH-------HHHHHhhccccCCcCCHHHHHHHHhcch-----hhhhhHH
Confidence 223999999999863222 246666665543 2445544444444466666555554444 4567778
Q ss_pred HHHHHHHHHHHHHhhc
Q 045431 344 FYKENTDIIVETFNSL 359 (433)
Q Consensus 344 ~~~~~~~~l~~~l~~~ 359 (433)
+..++...+.+.|+++
T Consensus 250 ~~~~nA~~lA~~L~~h 265 (380)
T d1ibja_ 250 KQQENARKIAMYLSSH 265 (380)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhC
Confidence 8889999999999987
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.70 E-value=5.5e-16 Score=146.70 Aligned_cols=344 Identities=9% Similarity=0.003 Sum_probs=192.7
Q ss_pred hcCCCCceEEecCCC--CCCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCC
Q 045431 58 LKYPDAEVISLGIGD--TTEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDG 134 (433)
Q Consensus 58 ~~~~~~~~i~l~~g~--~~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G 134 (433)
...+++..||+..|. ..+. .+|.+.+++.+++.+... .... ......+.+++.+.+.. ..+.+.++.+
T Consensus 34 ~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~---~~~~----~~~~~~~~~~~~~~~~~--~~~~v~~~~s 104 (404)
T d1z7da1 34 YDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTI---CSRA----FFSVPLGICERYLTNLL--GYDKVLMMNT 104 (404)
T ss_dssp EETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSC---CCTT----SEEHHHHHHHHHHHHHH--TCSEEEEESS
T ss_pred EECCCCEEEEccccHHHHhhhcCcHHHHHHHHHHHHhCCC---cccc----cchHHHHHHHHhhhhcc--ccceeeeecc
Confidence 345677889987653 2233 578999999998875321 1111 11122233333333211 3467888888
Q ss_pred hHHHHHHHHHhc-----------CCCCEEEEeCCCChhhhhhHHHhCCc-ccccccccccceEEEeecCccCCcccCCCC
Q 045431 135 AKCDISRLQIVF-----------GSNVTMAVQDPSYPAYVDSSVIMGQT-GEFQKDAEKYGKIEYMRCTAENGFFPDLST 202 (433)
Q Consensus 135 ~~~al~~l~~l~-----------~~gd~Vl~~~p~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (433)
++++......+. .....++....+|.+........... ......+........+|.+....... ...
T Consensus 105 gs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 183 (404)
T d1z7da1 105 GAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEE-ELK 183 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECTTCHHHHHH-HHT
T ss_pred ccchHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccCCCCCCccccccccchHHHHHH-Hhc
Confidence 888876421111 12246777777777654333222211 11111111111222333221111000 001
Q ss_pred CCCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccc
Q 045431 203 VARTDIIFFCSP-NNPTGAA-ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAG 280 (433)
Q Consensus 203 ~~~~~~i~l~~p-~nPtG~~-~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~ 280 (433)
.+++.+ ++..| +...|.. .+++.+++|.++|++||+++|.||++..|...+.......++-.+| ++ +++|.++
T Consensus 184 ~~~iAa-vi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~~~e~~gv~PD-iv---t~gK~l~ 258 (404)
T d1z7da1 184 DPNVCA-FIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPD-VI---LLGKALS 258 (404)
T ss_dssp STTEEE-EEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCS-EE---EECGGGG
T ss_pred CCCEEE-EEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccccccccccCCCCC-EE---EEccccc
Confidence 234555 44567 4556654 5677899999999999999999999998766665544444443455 23 7899998
Q ss_pred ccc-cceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-hHHHHHHHHHHHHHHHHHHHHhh
Q 045431 281 FTG-VRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-KAVHEVIGFYKENTDIIVETFNS 358 (433)
Q Consensus 281 ~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~ 358 (433)
.| ..+|.+++++++. +.+......++.+.++++.+++.+.|+.... ...++..+.-....+.+.+.+++
T Consensus 259 -gG~~p~~~v~~~~~i~--------~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 329 (404)
T d1z7da1 259 -GGHYPISAVLANDDIM--------LVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKD 329 (404)
T ss_dssp -TTSSCCEEEEECHHHH--------TTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -CCCCCcccccchHHHH--------ccCCCCCcCcCCCCCcchhhhhhhhhhhhhcchhhhhhccchhHHHHHHHHHHhc
Confidence 56 7999999998885 3333333455666789999998888863222 22333333333344455555555
Q ss_pred cCCe-eecCCCccEEEEECCC--CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe--eccChhHHHHHHHHHHHhhC
Q 045431 359 LGFK-VYGGKNAPYVWVQFPG--RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS--AFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 359 ~g~~-~~~~~~g~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l~ 433 (433)
+++. -+.. .|.++.+.+.. ....++...++++ ||.+.+. +.+.|||+ +..+++++++++++|+++++
T Consensus 330 ~~~v~~vrg-~Gl~~~i~~~~~~~~~~~~~~~l~~~-Gl~~~~~------~~~~ir~~Ppl~it~~~id~~~~~l~~alk 401 (404)
T d1z7da1 330 SKIVRDVRG-KGLLCAIEFKNELVNVLDICLKLKEN-GLITRDV------HDKTIRLTPPLCITKEQLDECTEIIVKTVK 401 (404)
T ss_dssp CTTEEEEEE-ETTEEEEEECTTTCCHHHHHHHHHHT-TEECCEE------TTTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEe-eCcEEEEEEcCCcccHHHHHHHHHhC-CeEEecC------CCCEEEEECCcCCCHHHHHHHHHHHHHHHH
Confidence 5432 2222 45666677762 3345566666654 9998653 24679998 56799999999999999874
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=99.69 E-value=1.4e-15 Score=144.79 Aligned_cols=347 Identities=9% Similarity=0.019 Sum_probs=194.0
Q ss_pred HHHHhcCCCCceEEecCCC--CCCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEE
Q 045431 54 AAHMLKYPDAEVISLGIGD--TTEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIF 130 (433)
Q Consensus 54 ~~~~~~~~~~~~i~l~~g~--~~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~ 130 (433)
+....+.+++..||+..+. ..+. .+|.+.+++.+++.+.. . .. ........+++.+....+ ..+.++
T Consensus 43 G~~l~D~~G~~ylD~~~~~~~~~lGh~hp~i~~ai~~~~~~~~----~-~~----~~~~~~~~la~~~~~~~~-~~~~v~ 112 (427)
T d2gsaa_ 43 DAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGT----S-FG----APCALENVLAEMVNDAVP-SIEMVR 112 (427)
T ss_dssp BTEEEETTSCEEEESSGGGTTTTTCBTCHHHHHHHHHHHTTCS----C-CS----SCCHHHHHHHHHHHHHST-TCSEEE
T ss_pred cCEEEECCCCEEEEechhHHHHhccCCcHHHHHHHHHHHHhcC----c-cc----cchhHHHHHHHHHHhhCC-cccccc
Confidence 3334456678899997663 2222 67899999999986521 1 11 112445556666554222 347889
Q ss_pred EcCChHHHHHH-HH--HhcCCCCEEEEeCCCChhhhhhHHHhCCccccc-----ccc---cccceEEEeecCccCCcccC
Q 045431 131 VSDGAKCDISR-LQ--IVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQ-----KDA---EKYGKIEYMRCTAENGFFPD 199 (433)
Q Consensus 131 ~~~G~~~al~~-l~--~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~ 199 (433)
+++++++|++. +. .......+|+..+.+|++...........+... .++ .........+.++-..+...
T Consensus 113 f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~le~~ 192 (427)
T d2gsaa_ 113 FVNSGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKAL 192 (427)
T ss_dssp EESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEECTTCHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccCcchHHHHHHH
Confidence 99999999886 32 223445788888888887543332221110000 000 00011222222111111001
Q ss_pred CCCC-CCccEEEEcCC-CCcccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccc
Q 045431 200 LSTV-ARTDIIFFCSP-NNPTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFS 276 (433)
Q Consensus 200 ~~~~-~~~~~i~l~~p-~nPtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~s 276 (433)
+++. .++.+|+ ..| +.-.|. ..+++.+++|.++|++||+++|.||++..+ ..+.......++-.+| ++ +++
T Consensus 193 ~~~~~~~iaavi-~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~-r~g~~~~~~~~gi~PD-i~---~~g 266 (427)
T d2gsaa_ 193 FAENPGEIAGVI-LEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGF-RIAYGGVQEKFGVTPD-LT---TLG 266 (427)
T ss_dssp HTTSTTTEEEEE-ECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTTCHHHHTTCCCS-EE---EEC
T ss_pred HHhCCCCeEEEE-EcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccc-eecccchHHhcCCCHH-HH---hhh
Confidence 1122 3444544 466 333454 557889999999999999999999999977 3344333333433355 23 579
Q ss_pred ccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHH
Q 045431 277 KYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETF 356 (433)
Q Consensus 277 K~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l 356 (433)
|.+| .|+.+|.+++++++...- .........++.+.++++.+++.+.|+.... ++..+.++++.+++.+.|
T Consensus 267 K~lg-gG~p~~a~~~~~~i~~~~-----~~~~~~~~~~T~~gnpla~AAala~Le~i~~---~~l~~~~~~~g~~l~~~L 337 (427)
T d2gsaa_ 267 KIIG-GGLPVGAYGGKREIMQLV-----APAGPMYQAGTLSGNPLAMTAGIKTLELLRQ---PGTYEYLDQITKRLSDGL 337 (427)
T ss_dssp GGGG-TTSCCEEEEECHHHHTTB-----TTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHH
T ss_pred hccC-CCcceeeeeehHHHHHHh-----cccCCCcCCCCCCCCchhhHHHHHhhHHhhh---hhHHhhhhHHHHHHHHHH
Confidence 9998 899999999988875110 0001123345566789999888887763222 122333444444444444
Q ss_pred ----hhcCCeee-cCCCccEEEEEC---CCC--------Ch---HHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccC
Q 045431 357 ----NSLGFKVY-GGKNAPYVWVQF---PGR--------SS---WDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGH 417 (433)
Q Consensus 357 ----~~~g~~~~-~~~~g~~~~~~~---~~~--------~~---~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~ 417 (433)
++.++... ..-++++ .+.+ +.. +. ..+...+++ +||.+.|+.. ..+-+++..+
T Consensus 338 ~~l~~~~~~~~~v~~~ggm~-~i~~~~~~v~~~~~~~~~d~~~~~~~~~~ll~-~Gv~l~p~~~------~~~~~~l~~T 409 (427)
T d2gsaa_ 338 LAIAQETGHAACGGQVSGMF-GFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLE-QGIYLAPSQF------EAGFTSLAHT 409 (427)
T ss_dssp HHHHHHTTCCCEEEEETTEE-EEESSSCCCCSHHHHTTSCHHHHHHHHHHHHH-TTEECCSSTT------SCEECCTTCC
T ss_pred HHHHhhcCCCcEEcccCCeE-EEEEeccCCCCHHHhhcccHHHHHHHHHHHHH-CCEEECCCCC------cceeCCCCCC
Confidence 44443322 1123433 2222 111 11 234445555 5999987532 1223567779
Q ss_pred hhHHHHHHHHHHHhhC
Q 045431 418 RGNVLEACKRFKHLYK 433 (433)
Q Consensus 418 ~~~l~~~l~~l~~~l~ 433 (433)
++||++++++|+++++
T Consensus 410 e~dId~~l~al~~al~ 425 (427)
T d2gsaa_ 410 EEDIDATLAAARTVMS 425 (427)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999874
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.69 E-value=3.9e-15 Score=137.85 Aligned_cols=213 Identities=16% Similarity=0.146 Sum_probs=147.3
Q ss_pred CCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhC-Ccccccccccccc
Q 045431 106 GEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMG-QTGEFQKDAEKYG 183 (433)
Q Consensus 106 g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g-~~~~~~~~~~~~~ 183 (433)
....|.+.||+.- + .+..++++++++|+.+ +.+++++||+|++.+..|.+....++..- ..| .
T Consensus 60 T~~~LE~~la~LE----g--~~~a~~~~SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~G---------i 124 (392)
T d1gc0a_ 60 TLNLLEARMASLE----G--GEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFG---------V 124 (392)
T ss_dssp HHHHHHHHHHHHH----T--CSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGT---------C
T ss_pred HHHHHHHHHHHHh----C--CcceeehhhHHHHHHHHHHhhccCCCeeecccccchhhhhhhhhhhccCC---------c
Confidence 4556667777664 2 3567788888999886 78999999999999999999877765442 223 3
Q ss_pred eEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccC
Q 045431 184 KIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIP 263 (433)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~ 263 (433)
.+.+++..+...+... ..+++++|++-+|.|||..+.+ +++|+++|+++|+++++|.+++.-... .|+ ++
T Consensus 125 ~~~~~d~~d~~~~~~a--i~~~t~lv~~Esp~NP~l~v~D---i~~i~~ia~~~g~~~vvDnT~atP~~~---~Pl-~~- 194 (392)
T d1gc0a_ 125 KLRHVDMADLQALEAA--MTPATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQ---RPL-EL- 194 (392)
T ss_dssp EEEEECTTCHHHHHHH--CCTTEEEEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHC---CGG-GG-
T ss_pred ccccCCccCHHHHHHh--CCCCCeEEEecccccceeeecc---hHHHHHHHHhcCCEEEEecCccCcccc---ChH-Hh-
Confidence 6666654332222111 1478999999999999999998 899999999999999999999842111 122 22
Q ss_pred CCCcceEEEecccccccc-cccceeeeeccccccccCCcchhHHH--HHHHhhccCCCcHHHHHHHHHhcCcCChhHHHH
Q 045431 264 GAKEVAIETSSFSKYAGF-TGVRLGWTVIPKELLFSDGFPVAKDF--NRIVCTCFNGASNISQAGGLACLSPEGFKAVHE 340 (433)
Q Consensus 264 ~~~~~vi~i~S~sK~~~~-~G~r~G~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~ 340 (433)
+-.|++.|.+|.++- ...-.|.++++++.+ .+. ...+.......++.....+..-++ .+..
T Consensus 195 ---GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~--------~~~r~~~~~~~~G~~~~p~da~ll~rgl~-----TL~l 258 (392)
T d1gc0a_ 195 ---GADLVVHSATKYLSGHGDITAGIVVGSQALV--------DRIRLQGLKDMTGAVLSPHDAALLMRGIK-----TLNL 258 (392)
T ss_dssp ---TCSEEEEETTTTTTCSSSCCCEEEEECHHHH--------HHHHHTHHHHHTCCCCCHHHHHHHHHHHT-----THHH
T ss_pred ---CCCEEEEecceeecCCcccccccccchhHHH--------HHHHHHHHHHccCCcCChhhHHHHHhccc-----cHHH
Confidence 123899999999852 224467777777664 222 223333344456665555454443 4567
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 045431 341 VIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 341 ~~~~~~~~~~~l~~~l~~~ 359 (433)
+.++..++...+.+.|+++
T Consensus 259 Rm~~~~~nA~~lA~~L~~h 277 (392)
T d1gc0a_ 259 RMDRHCANAQVLAEFLARQ 277 (392)
T ss_dssp HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 7778889999999999887
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.69 E-value=5.1e-16 Score=146.47 Aligned_cols=284 Identities=11% Similarity=0.033 Sum_probs=167.1
Q ss_pred CCCCCCcEEEcCChHHHHHH-HHHhc---CCCCEEEEeCCCChhhhh--hHHHhCCcccccccccccceEEEeecCccC-
Q 045431 122 LGIEEGDIFVSDGAKCDISR-LQIVF---GSNVTMAVQDPSYPAYVD--SSVIMGQTGEFQKDAEKYGKIEYMRCTAEN- 194 (433)
Q Consensus 122 ~~~~~~~i~~~~G~~~al~~-l~~l~---~~gd~Vl~~~p~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~- 194 (433)
.+.+++.|++|+|+++++++ +..++ ++||+|++....+++... ..+..+. ....+...+.+
T Consensus 53 ~~~~~~~i~~t~sgT~a~~~~~~~l~~~~~~gd~vlv~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~ 120 (382)
T d2bkwa1 53 AASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGA------------QVDVVRPLKIGE 120 (382)
T ss_dssp GGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTC------------EEEEECCSSTTS
T ss_pred cCCCCeEEEEeCcHHHHHHHHHHHHHHhcCCCCceEEEEechhhhhhhhhcccccc------------ccccccccCCCC
Confidence 34567889999999999997 56765 689999999887766432 2333342 33333322211
Q ss_pred CcccC-CC---CCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHc--CCEEEEeccccccccCCCCCcccccCCCCcc
Q 045431 195 GFFPD-LS---TVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDN--GSIIVYDSAYALYISDDNPRSIFEIPGAKEV 268 (433)
Q Consensus 195 ~~~~~-~~---~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~--~~~li~De~~~~~~~~~~~~~~~~~~~~~~~ 268 (433)
....+ ++ ...+++++++++.+|.||+..+. .++.+.|+++ ++++++|.+++... .|..+... +.
T Consensus 121 ~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~~---~~~~~~~~~~~~~~~~~vDa~qs~g~---~pid~~~~----gi 190 (382)
T d2bkwa1 121 SVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDL---KAISQAIKQTSPETFFVVDAVCSIGC---EEFEFDEW----GV 190 (382)
T ss_dssp CCCHHHHHHHHHHSCCSEEEEESEETTTTEECCH---HHHHHHHHHHCTTSEEEEECTTTTTT---SCCCTTTT----TC
T ss_pred ccchhHHHHHhhhccchheeeeeccccccccccc---hhhhhhccccccceeeeeeccccccc---cccccccc----Ce
Confidence 11111 11 13578888888999999999994 5555555554 69999999988421 13333322 23
Q ss_pred eEEEecccccc-cccccceeeeeccccccccCCc---------------chhHHHHHHH---hhccCCCcHHHHHHHHHh
Q 045431 269 AIETSSFSKYA-GFTGVRLGWTVIPKELLFSDGF---------------PVAKDFNRIV---CTCFNGASNISQAGGLAC 329 (433)
Q Consensus 269 vi~i~S~sK~~-~~~G~r~G~l~~~~~~~~~~~~---------------~~~~~~~~~~---~~~~~~~~~~~q~~~~~~ 329 (433)
.+++.|.+|++ |.+| +|+++++++.+....+ .......... .....+++.....+..++
T Consensus 191 D~~~~s~~K~l~gP~G--~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~a 268 (382)
T d2bkwa1 191 DFALTASQKAIGAPAG--LSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVA 268 (382)
T ss_dssp SEEEEESSSTTCCCSC--EEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHH
T ss_pred eEEeecccccCcCCCc--hhhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHH
Confidence 48889999988 5566 8999999877521100 0000111111 112234555444444454
Q ss_pred cCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeec---CC--CccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCC
Q 045431 330 LSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYG---GK--NAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFG 403 (433)
Q Consensus 330 l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~---~~--~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~ 403 (433)
++....+.++...++.++.++++.+.+.+. ++.... +. ....+.+.++ +..++.. +++++||.+.+|...
T Consensus 269 L~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~~~~~--~~~~~~~-~L~~~gi~i~~G~~~- 344 (382)
T d2bkwa1 269 LKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVA--DPPDVIA-FLKSHGVVIAGGIHK- 344 (382)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECS--CHHHHHH-HHHHTTEECBCCCCT-
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHhhhcccccccccCchhccCCcEEEEcCC--CHHHHHH-HHHHCCeEEECCCCh-
Confidence 442222335666777777888888888764 443322 11 1123445555 4555554 456779999987532
Q ss_pred CCCCCeEEEe-e-cc-ChhH---HHHHHHHHHHhhC
Q 045431 404 PGGEGFIRVS-A-FG-HRGN---VLEACKRFKHLYK 433 (433)
Q Consensus 404 ~~~~~~iRi~-~-~~-~~~~---l~~~l~~l~~~l~ 433 (433)
.-+.+.|||+ + +. ++++ +..+++.|++.|+
T Consensus 345 ~~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~~~L~ 380 (382)
T d2bkwa1 345 DIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQ 380 (382)
T ss_dssp TTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTT
T ss_pred hhcCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHHHC
Confidence 1235689999 5 23 3444 6666666666553
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.68 E-value=2.6e-15 Score=145.17 Aligned_cols=306 Identities=11% Similarity=-0.043 Sum_probs=168.4
Q ss_pred CCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccc
Q 045431 101 YGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDA 179 (433)
Q Consensus 101 Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~ 179 (433)
+.+..-..++++.+|+++ |++ +-+++++|+++++.+ +.++++|||+|++++.+|.+....+..++..+.
T Consensus 62 ~~~~~~i~eae~~~A~~~----ga~-~a~f~~~Gtt~~n~a~i~a~~~~gd~Vi~~~~~H~Sv~~~~~~l~~~~~----- 131 (462)
T d1c4ka2 62 LIHEGPAVAAEKHAARVY----NAD-KTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRP----- 131 (462)
T ss_dssp TTTBTHHHHHHHHHHHHT----TCS-EEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEE-----
T ss_pred cCCCHHHHHHHHHHHHHh----CCC-eEEEECCchHHHHHHHHHHhcCCCCeEEecccchHHHHHHHHHHhcCCc-----
Confidence 334445678899999987 653 455666777777765 688899999999999999998776655543221
Q ss_pred cccceEEEeecCccCCc--------cc----------CCC--CCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCC
Q 045431 180 EKYGKIEYMRCTAENGF--------FP----------DLS--TVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGS 239 (433)
Q Consensus 180 ~~~~~~~~~~~~~~~~~--------~~----------~~~--~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~ 239 (433)
.+...+.++.+.. .. +++ ...++..+++.+..|-+|.+.+ +++|+++|++||+
T Consensus 132 ----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~d---l~~I~~ia~~~g~ 204 (462)
T d1c4ka2 132 ----VYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYN---AHEVVKRIGHLCD 204 (462)
T ss_dssp ----EEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEEC---HHHHHHHHGGGBS
T ss_pred ----eeeecccccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhh---HHHHHHHHHHcCC
Confidence 2222223222110 00 000 1233444454544466899888 8889999999999
Q ss_pred EEEEeccccccc-cCCC-CCcccccC----CCCcceEEEecccccccccccceeeee-ccccccccCC-cchhHHHHHHH
Q 045431 240 IIVYDSAYALYI-SDDN-PRSIFEIP----GAKEVAIETSSFSKYAGFTGVRLGWTV-IPKELLFSDG-FPVAKDFNRIV 311 (433)
Q Consensus 240 ~li~De~~~~~~-~~~~-~~~~~~~~----~~~~~vi~i~S~sK~~~~~G~r~G~l~-~~~~~~~~~~-~~~~~~~~~~~ 311 (433)
++++|++|+... +.+. +.+..... ...+..+++.|++|++|.++ .|.++ ..+..+.... ......+.+..
T Consensus 205 ~l~vD~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~--~g~ll~~~~~~~~~~~~~~~~~~~~~~~ 282 (462)
T d1c4ka2 205 YIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFS--QTSQIHKKDSHIKGQLRYCDHKHFNNSF 282 (462)
T ss_dssp EEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCT--TCEEEEEECGGGTTSTTCCCHHHHHHHH
T ss_pred EEEEechhhccccccCcCCcchhhccccccccCCccEEEEecCccccccc--ceEEEEeccccccccchhhhHHHHHHhh
Confidence 999999998532 2221 11111110 11234588999999997433 35444 4444331100 00012233222
Q ss_pred hhc-cCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcC-Ceee------c------------------
Q 045431 312 CTC-FNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLG-FKVY------G------------------ 365 (433)
Q Consensus 312 ~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~------~------------------ 365 (433)
... +.+++.........+.........+++.++..++.+.+++.+.+.+ .... .
T Consensus 283 ~~~~t~sp~~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 362 (462)
T d1c4ka2 283 NLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDY 362 (462)
T ss_dssp HHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGG
T ss_pred hhcccCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchHhhhcccch
Confidence 222 2223333222222221111112345666677777788888877652 1100 0
Q ss_pred ----C----------CCccE------EEEECCC------------CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe
Q 045431 366 ----G----------KNAPY------VWVQFPG------------RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS 413 (433)
Q Consensus 366 ----~----------~~g~~------~~~~~~~------------~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~ 413 (433)
+ ....+ +.+..++ ..... +...++++||.+.. .+.+.+|++
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~Dp~k~~l~~~gi~~~~g~~~~~G~~~~~-~~~~L~~~gI~~e~------~~~~~i~~~ 435 (462)
T d1c4ka2 363 WRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATI-VANYLRDHGIIPEK------SDLNSILFL 435 (462)
T ss_dssp GBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHH-HHHHHHHTTCCCSE------ECSSEEEEE
T ss_pred hccCCcchhccccccCccceecccceeEEecCCccccccchhhcCCcHHH-HHHHHHHcCCeeec------cCCCeEEEE
Confidence 0 00000 2333321 22334 44455677986632 235679998
Q ss_pred e--ccChhHHHHHHHHHHHhh
Q 045431 414 A--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 414 ~--~~~~~~l~~~l~~l~~~l 432 (433)
+ +.++++++.++++|+++.
T Consensus 436 ~s~~~T~edid~li~aL~ei~ 456 (462)
T d1c4ka2 436 MTPAETPAKMNNLITQLLQLQ 456 (462)
T ss_dssp CCTTCCHHHHHHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHHH
Confidence 6 458999999999998863
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.68 E-value=3.7e-15 Score=142.86 Aligned_cols=327 Identities=13% Similarity=0.058 Sum_probs=194.5
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-H
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-L 142 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l 142 (433)
-+|||-+-....+..+..+.+ +. .+-..|+.++...+|.+.+|+++ |. +.++++++++.|..+ +
T Consensus 43 v~iDl~sDs~t~am~~~~~aa----~~-----~GDd~Y~~dpt~~~lE~~~a~l~----G~--e~al~~~SGt~An~~a~ 107 (456)
T d1c7ga_ 43 IYIDLLTDSGTNAMSDKQWAG----MM-----IGDEAYAGSENFYHLEKTVKELF----GF--KHIVPTHQGRGAENLLS 107 (456)
T ss_dssp CSEECSCSSSCCCEEHHHHHH----TT-----SCCCCSSSCHHHHHHHHHHHHHH----CC--SEEEEESSHHHHHHHHH
T ss_pred eeeEcccCCCcccchHHHHHH----Hh-----ccchhccCCchHHHHHHHHHHHh----CC--CeEEECCCHHHHHHHHH
Confidence 478886544433444444433 22 23346888888899999999998 54 467778888888776 6
Q ss_pred HHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCcc--------CCcccCCCC---------CCC
Q 045431 143 QIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAE--------NGFFPDLST---------VAR 205 (433)
Q Consensus 143 ~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~---------~~~ 205 (433)
..++++||.|+.... |......+...|. ..+.+..+.. .....++++ ...
T Consensus 108 ~~l~~~Gd~Vi~~~~-f~~~~~~i~~~g~------------~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~ 174 (456)
T d1c7ga_ 108 QLAIKPGQYVAGNMY-FTTTRFHQEKNGA------------TFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAEN 174 (456)
T ss_dssp HHHCCTTEEEEESSC-CHHHHHHHHHTTE------------EEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGG
T ss_pred HHhcCCCCeEecCcc-hHHHHHHHHHcCc------------eeeeccccccccccccCCccccCCHHHHHHHhhhcCCcc
Confidence 888999999987665 4444444555663 2322222110 011112211 134
Q ss_pred ccEEEEcCCCCcc-ccCCCHHHHHHHHHHHHHcCCEEEEeccccccc--c-----CC-CCCccccc----CCCCcceEEE
Q 045431 206 TDIIFFCSPNNPT-GAAATREQLTRLVQFAKDNGSIIVYDSAYALYI--S-----DD-NPRSIFEI----PGAKEVAIET 272 (433)
Q Consensus 206 ~~~i~l~~p~nPt-G~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~--~-----~~-~~~~~~~~----~~~~~~vi~i 272 (433)
+.++++.+|+|+. |.+++.+++++|.++|++||+.+++|+++.... + .+ ...++.++ ...-| ++.
T Consensus 175 ~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad--~~s 252 (456)
T d1c7ga_ 175 IAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYAD--GCT 252 (456)
T ss_dssp EEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCS--EEE
T ss_pred ceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchhhcchhhhcccccccCCCChhhhccccccccc--cEE
Confidence 5577788999886 688899999999999999999999999975311 0 00 01122111 11112 556
Q ss_pred ecccccccccccceeeeeccccccccCCcchhHHHHHHH--hhc---cCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHH
Q 045431 273 SSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIV--CTC---FNGASNISQAGGLACLSPEGFKAVHEVIGFYKE 347 (433)
Q Consensus 273 ~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 347 (433)
.|++|.++.++ -|+++.+++.+ .+..+... ... ..+.+.....++...+..... .+..++..+
T Consensus 253 ~s~~K~~~~~~--GG~i~~~~~~l-------~~~~r~~~~~~~g~~~~g~~~~~~~~a~a~~l~e~~~---~~~l~~r~~ 320 (456)
T d1c7ga_ 253 MSGKKDCLVNI--GGFLCMNDEEM-------FSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ---YEYIEHRVK 320 (456)
T ss_dssp EETTTTTCCSS--CEEEEESCHHH-------HHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC---HHHHHHHHH
T ss_pred Eeccccccccc--eeEEEcCCHHH-------HHHHHHhccccCCCcccchhhHHHHHHHHHHHHHhcC---HHHHHHHHH
Confidence 68999987443 37787776654 23333221 111 112222222222222221111 222333455
Q ss_pred HHHHHHHHHhhcCCeeecCCCccEEEEECC----C-----CChHHHHHHHHHcCCeEecCCCCC--C--C-------CCC
Q 045431 348 NTDIIVETFNSLGFKVYGGKNAPYVWVQFP----G-----RSSWDVFSEILEKTHVVTTPGSGF--G--P-------GGE 407 (433)
Q Consensus 348 ~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~----~-----~~~~~~~~~l~~~~gi~v~~g~~f--~--~-------~~~ 407 (433)
+.+++.+.|++.|+.+..|.++..++++.. . .....+..+++.+.||...+...+ + + ...
T Consensus 321 ~~~~L~e~L~~~g~~vv~p~g~~~v~vda~~~~~~i~~~~~~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~ 400 (456)
T d1c7ga_ 321 QVRYLGDKLREAGVPIVEPTGGHAVFLDARRFCPHLTQDQFPAQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKL 400 (456)
T ss_dssp HHHHHHHHHHHTTCCBCSSCCSSEEEEEHHHHCTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSC
T ss_pred HHHHHHHHHHhccCCcccCCCCcceeEechhhccCCCcccccHHHHHHHHHHHhCeeecccCccccccCCcccCccCCcc
Confidence 667888999999999888888887777532 1 224456667777779876432111 0 0 123
Q ss_pred CeEEEeec---cChhHHHHHHHHHHHhh
Q 045431 408 GFIRVSAF---GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 408 ~~iRi~~~---~~~~~l~~~l~~l~~~l 432 (433)
..+||++. .|.++|+..++.|+++.
T Consensus 401 e~vRLaip~~~~T~e~iD~Vae~i~~v~ 428 (456)
T d1c7ga_ 401 ETVRLTIPRRVYTYAHMDVVADGIIKLY 428 (456)
T ss_dssp CEEEEECCTTSCCHHHHHHHHHHHHHHH
T ss_pred ceEEEecCcccCCHHHHHHHHHHHHHHH
Confidence 46999964 28999999999998875
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.66 E-value=1.9e-14 Score=133.24 Aligned_cols=215 Identities=14% Similarity=0.132 Sum_probs=143.2
Q ss_pred CCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHH-hCCcccccccccccc
Q 045431 106 GEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVI-MGQTGEFQKDAEKYG 183 (433)
Q Consensus 106 g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~-~g~~~~~~~~~~~~~ 183 (433)
....|.+.||+.- + .+.-++++++++|+.. +..++++||+|++.+..|.+....+.. +...| .
T Consensus 64 T~~~LE~~la~LE----g--g~~a~~~sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~G---------i 128 (397)
T d1y4ia1 64 TTDALEKKLAVLE----R--GEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFG---------I 128 (397)
T ss_dssp HHHHHHHHHHHHH----T--CSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTT---------C
T ss_pred HHHHHHHHHHHHh----C--CccceeehHHHHHHHHHHhhccCCCCeeeeecccccccchhhhcccCCCc---------e
Confidence 3445555555553 2 3456778888889876 789999999999999999887665542 21222 3
Q ss_pred eEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccC
Q 045431 184 KIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIP 263 (433)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~ 263 (433)
++.++...+...+...+ .+++++|++-+|.|||..+.+ +++|+++|+++|+++++|..++.-.. ..|+ .+
T Consensus 129 ~~~~vd~~d~~~~~~~i--~~~Tklv~~Esp~NP~l~v~D---i~~i~~iA~~~gi~~vvDnT~atP~~---~~Pl-~~- 198 (397)
T d1y4ia1 129 NVRFVDAGKPEEIRAAM--RPETKVVYIETPANPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYC---QQPL-QL- 198 (397)
T ss_dssp EEEEECTTSHHHHHHHC--CTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTT---CCGG-GG-
T ss_pred EeeccCCCCHHHHHHhc--CCCCcEEEecCCcccceeecc---cHHHHHHhhcCCceEEecCcccCccc---Ccch-hc-
Confidence 67777654322222212 368999999999999999988 88999999999999999999874111 1122 12
Q ss_pred CCCcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHH
Q 045431 264 GAKEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVI 342 (433)
Q Consensus 264 ~~~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~ 342 (433)
+-.|++.|.+|.++-.+ .=.|.++++++.+.+ .++...+.......++.....+.+-|+ .+.-+.
T Consensus 199 ---GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~------~r~~~~~~~~G~~l~p~~a~l~~rgl~-----TL~lRm 264 (397)
T d1y4ia1 199 ---GADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQ------ARFVGLKDITGGCMSPFNAWLTLRGVK-----TLGIRM 264 (397)
T ss_dssp ---TCSEEEEETTTTTTCSSCCCCEEEEECHHHHHH------HHHTHHHHTTCCCCCHHHHHHHHHHHT-----THHHHH
T ss_pred ---CCCEEEEehhhhcCCCcceeeeccCCCHHHHHH------HHHHHHHhCcCCcCCHHHHHHHHcCcC-----cHHHHH
Confidence 12399999999886222 234677777766410 122223333344456666555554444 356667
Q ss_pred HHHHHHHHHHHHHHhhc
Q 045431 343 GFYKENTDIIVETFNSL 359 (433)
Q Consensus 343 ~~~~~~~~~l~~~l~~~ 359 (433)
++..++...+.+.|+++
T Consensus 265 ~~~~~nA~~lA~~L~~h 281 (397)
T d1y4ia1 265 ERHCENALKIARFLEGH 281 (397)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 77888999999999987
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.65 E-value=4.7e-14 Score=132.40 Aligned_cols=304 Identities=14% Similarity=0.102 Sum_probs=184.7
Q ss_pred hHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHh-cCCCCEEEEe
Q 045431 78 PEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIV-FGSNVTMAVQ 155 (433)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l-~~~gd~Vl~~ 155 (433)
+++-++++.+.+.. +....| ....+|++.+|+++ +. ++.++++++++|+.+ +.++ +++||+|+++
T Consensus 11 ~~~~~~~~~~~~~~-----~~~~~G--~~v~~~E~~la~~~----g~--~~ai~~~sgt~Al~~al~al~~~~gdeVi~~ 77 (376)
T d1mdoa_ 11 GAEELAAVKTVLDS-----GWITTG--PKNQELEAAFCRLT----GN--QYAVAVSSATAGMHIALMALGIGEGDEVITP 77 (376)
T ss_dssp CHHHHHHHHHHHHH-----TCCSSS--HHHHHHHHHHHHHH----CC--SEEEEESCHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred CHHHHHHHHHHHhc-----CCCcCC--HHHHHHHHHHHHHH----Cc--CeEEEeCCHHHHHHHHHHHhCCCCCCEEEEe
Confidence 45556778887763 212223 35789999999998 54 467777777888887 6666 7999999999
Q ss_pred CCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEEcCCCCccccCCCHHHHHHH
Q 045431 156 DPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFFCSPNNPTGAAATREQLTRL 230 (433)
Q Consensus 156 ~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~~p~nPtG~~~~~~~~~~i 230 (433)
..+|.+....+..+| ..++.++++++ .+..+++. .+++++|+++ +..|...+ +.+|
T Consensus 78 ~~~~~~~~~ai~~~g------------~~pv~~d~~~~-~~~~d~~~l~~~i~~~tkaIi~~---h~~G~~~~---~~~i 138 (376)
T d1mdoa_ 78 SMTWVSTLNMIVLLG------------ANPVMVDVDRD-TLMVTPEHIEAAITPQTKAIIPV---HYAGAPAD---LDAI 138 (376)
T ss_dssp SSSCHHHHHHHHHTT------------CEEEEECBCTT-TCCBCHHHHHHHCCTTEEEECCB---CGGGCCCC---HHHH
T ss_pred cccccccccchhccc------------cceeeeccccc-ccCCCHHHHHHhcCCCCeEEEEe---CCCCCccc---hhHH
Confidence 999999999999999 47788888765 33334332 4688988875 46888777 7788
Q ss_pred HHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHH
Q 045431 231 VQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRI 310 (433)
Q Consensus 231 ~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~ 310 (433)
.++|+++|++||+|++++....-.. ... +..+..++-...+|.++ .| .-|.++++++.+ .+.+...
T Consensus 139 ~~i~~~~~i~vIeD~a~a~g~~~~~-~~~----g~~g~~~~Sf~~~K~l~-~g-~GG~i~t~~~~l-------~~~~~~~ 204 (376)
T d1mdoa_ 139 YALGERYGIPVIEDAAHATGTSYKG-RHI----GARGTAIFSFHAIKNIT-CA-EGGIVVTDNPQF-------ADKLRSL 204 (376)
T ss_dssp HHHHHHHTCCBCEECTTCTTCEETT-EET----TSSSEEEEECCTTSSSC-SS-SCEEEEESCHHH-------HHHHHHH
T ss_pred HHHHHhcCceEEeccchhccCeeCC-eec----ccccCccccCCCcCCCC-CC-CCCEEEEechhH-------HHHHHhh
Confidence 8889999999999999985332111 111 11222232233368886 33 257777777664 2333222
Q ss_pred Hhhc------------------------cCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCC-eeec
Q 045431 311 VCTC------------------------FNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGF-KVYG 365 (433)
Q Consensus 311 ~~~~------------------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~-~~~~ 365 (433)
.... ....+.+..+....-| ..+++..++.++..+.+.+.|.+... ....
T Consensus 205 ~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL-----~~~~~~~~~r~~~~~~~~~~L~~~~~~~~~~ 279 (376)
T d1mdoa_ 205 KFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQL-----QKLDALNARRAAIAAQYHQAMADLPFQPLSL 279 (376)
T ss_dssp TBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHH-----HTHHHHHHHHHHHHHHHHHHHHTSSCEECCC
T ss_pred cccCCcccccccccccccccccchhcccccccchhhhhhhhhhh-----hhhhHHHHHHhhhhhhhhhhccccccccccc
Confidence 2111 1112222222222111 23466667777888888888887643 2222
Q ss_pred CCC----ccEEE-EECC----CCChHHHHHHHHHcCCeEecCCCCC----------CCCC---------CCeEEEee--c
Q 045431 366 GKN----APYVW-VQFP----GRSSWDVFSEILEKTHVVTTPGSGF----------GPGG---------EGFIRVSA--F 415 (433)
Q Consensus 366 ~~~----g~~~~-~~~~----~~~~~~~~~~l~~~~gi~v~~g~~f----------~~~~---------~~~iRi~~--~ 415 (433)
... ..+.+ +.+. .....++.+.| +++||.+++...- ...+ ...+.|-+ .
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~Rd~l~~~L-~~~gI~~~~~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~ 358 (376)
T d1mdoa_ 280 PSWEHIHAWHLFIIRVDEARCGITRDALMASL-KTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPD 358 (376)
T ss_dssp CSSCEECCCSCEEEECCHHHHSSCHHHHHHHH-HHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTT
T ss_pred ccccccccccccccccccccchhhHHHHHHHH-HHCCCCeeeECcchhcCHHHHhhCCCCCCHHHHHHHhCEEEccCCCC
Confidence 111 11222 2222 12334566555 5569988754320 0001 23466654 3
Q ss_pred cChhHHHHHHHHHHHhhC
Q 045431 416 GHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 416 ~~~~~l~~~l~~l~~~l~ 433 (433)
.+.+|++..++.|++++.
T Consensus 359 lt~~ei~~I~~~i~~i~~ 376 (376)
T d1mdoa_ 359 MTESDFDRVITALHQIAG 376 (376)
T ss_dssp CCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhC
Confidence 378999999999999863
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.65 E-value=2.1e-14 Score=133.12 Aligned_cols=215 Identities=11% Similarity=0.102 Sum_probs=145.6
Q ss_pred CCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccce
Q 045431 106 GEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGK 184 (433)
Q Consensus 106 g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~ 184 (433)
....|.+.||+.- + .+..++++++++|+.. +.+++++||+|++....|.+....+...-.+.. ..
T Consensus 68 t~~~LE~~la~LE----g--g~~a~~~sSGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~g--------i~ 133 (398)
T d1qgna_ 68 TTVVLEEKISALE----G--AESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMG--------IT 133 (398)
T ss_dssp HHHHHHHHHHHHH----T--CSEEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGT--------CE
T ss_pred HHHHHHHHHHHHh----C--CceEEEecCcchHHHHHHhhcccccccccccccccchhhhhhcccccccc--------cc
Confidence 4455667777653 3 3578888999999986 788999999999999999998776655432211 24
Q ss_pred EEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCC
Q 045431 185 IEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPG 264 (433)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 264 (433)
+..+......... .....+++++|++-+|.|||..+.+ +++|+++|+++|+++|+|+.++.-... .|+ ++
T Consensus 134 ~~~~~~~~~~~~~-~~~~~~~t~~v~~EspsNP~l~v~D---i~~ia~ia~~~g~~~vVDnT~atP~~~---~Pl-~~-- 203 (398)
T d1qgna_ 134 ATVIDPADVGALE-LALNQKKVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLNQ---KAL-AL-- 203 (398)
T ss_dssp EEEECSSCHHHHH-HHHHHSCEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC---CTT-TT--
T ss_pred cccccccchhhhh-hhhccccceEEEccCccccccccch---HHHHHHHHhhcCCEEEecceeeccccC---Cch-hh--
Confidence 5555432211111 1112368999998899999999988 889999999999999999998742111 111 11
Q ss_pred CCcceEEEeccccccccccc-ceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHH
Q 045431 265 AKEVAIETSSFSKYAGFTGV-RLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIG 343 (433)
Q Consensus 265 ~~~~vi~i~S~sK~~~~~G~-r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~ 343 (433)
+-.|++.|.+|.++-.+- =.|.++.+++++ ..+...........++.....+.+-+ +.+.-+.+
T Consensus 204 --GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~--------~~~~~~~~~~G~~l~p~~a~ll~rgl-----~TL~lRm~ 268 (398)
T d1qgna_ 204 --GADLVLHSATKFLGGHNDVLAGCISGPLKLV--------SEIRNLHHILGGALNPNAAYLIIRGM-----KTLHLRVQ 268 (398)
T ss_dssp --TCSEEEECTTTTTTCSSSCCCEEEEECHHHH--------HHHHHHHHHHCCCCCHHHHHHHHHHG-----GGHHHHHH
T ss_pred --CCCEEEEechhhcCcccceeehhhcchhhhh--------hhhhhhcccCCCcCCHHHHHHHHhcc-----hHHHHHHH
Confidence 223899999998863332 245666666654 44454444444556666655444444 44577778
Q ss_pred HHHHHHHHHHHHHhhc
Q 045431 344 FYKENTDIIVETFNSL 359 (433)
Q Consensus 344 ~~~~~~~~l~~~l~~~ 359 (433)
+..++...+.+.|+++
T Consensus 269 ~~~~nA~~lA~~L~~h 284 (398)
T d1qgna_ 269 QQNSTALRMAEILEAH 284 (398)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhC
Confidence 8889999999999987
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=2.4e-13 Score=126.09 Aligned_cols=213 Identities=11% Similarity=0.094 Sum_probs=143.6
Q ss_pred CCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHh-CCcccccccccccc
Q 045431 106 GEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIM-GQTGEFQKDAEKYG 183 (433)
Q Consensus 106 g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~ 183 (433)
....|.+.+++.- ..+..++++++++|+.. +..++++||+|++....|.+....+... ...| .
T Consensus 59 t~~~le~~la~LE------g~~~a~~~~SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~G---------i 123 (391)
T d1cl1a_ 59 THFSLQQAMCELE------GGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLG---------V 123 (391)
T ss_dssp HHHHHHHHHHHHH------TCSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGT---------C
T ss_pred hHHHHHHHHHHHh------CCccEEEeccccceeeehhhcccCCCCeEEEecccccchhhhhhhcccccc---------c
Confidence 3445666666642 23678899999999986 7899999999999999999987777643 3323 2
Q ss_pred eEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHH--cCCEEEEeccccccccCCCCCcccc
Q 045431 184 KIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKD--NGSIIVYDSAYALYISDDNPRSIFE 261 (433)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~--~~~~li~De~~~~~~~~~~~~~~~~ 261 (433)
.+..+...+...+... ..+++++|++-+|.||+..+.+ +++|+++|++ +|+++|+|+.++..... .|+ .
T Consensus 124 ~~~~~d~~d~~~~~~~--i~~~t~~i~~EtpsNP~l~v~D---i~~i~~~a~~~~~g~~~vVDnT~atP~~~---~Pl-~ 194 (391)
T d1cl1a_ 124 TTSWFDPLIGADIVKH--LQPNTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVLF---KAL-D 194 (391)
T ss_dssp EEEEECTTCGGGGGGT--CCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTSS---CGG-G
T ss_pred ccccccCccccccccc--cccccceeeecccCcccccccc---cHHHHHHHHhccCCcEEEEeccccchhhh---ccc-c
Confidence 5666554332222221 1368999999999999999998 6677777765 59999999999742221 122 1
Q ss_pred cCCCCcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHH
Q 045431 262 IPGAKEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHE 340 (433)
Q Consensus 262 ~~~~~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~ 340 (433)
+ +-.|++.|.+|.++-.+ .=.|.++.+++.. ..+...........++.....+.+-+ +.+..
T Consensus 195 ~----GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~--------~~~~~~~~~~G~~~~p~~a~ll~rgl-----~TL~l 257 (391)
T d1cl1a_ 195 F----GIDVSIQAATKYLVGHSDAMIGTAVCNARCW--------EQLRENAYLMGQMVDADTAYITSRGL-----RTLGV 257 (391)
T ss_dssp G----TCSEEEEETTTTTTCSSSCCCEEEEECTTTH--------HHHHHHHHHTTCCCCHHHHHHHHHHH-----TTHHH
T ss_pred c----ccceEEeecchhccccccccccceecccccc--------ccchhhhhcccccCCchhhhhhhccc-----hhHHH
Confidence 2 12388999999986222 2246666666653 44444444444555666555444433 34566
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 045431 341 VIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 341 ~~~~~~~~~~~l~~~l~~~ 359 (433)
+.++..++...+.+.|+++
T Consensus 258 R~~~~~~nA~~vA~~L~~h 276 (391)
T d1cl1a_ 258 RLRQHHESSLKVAEWLAEH 276 (391)
T ss_dssp HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 7778888999999999987
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=1.7e-14 Score=133.23 Aligned_cols=216 Identities=12% Similarity=0.151 Sum_probs=144.3
Q ss_pred CCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccc
Q 045431 105 QGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYG 183 (433)
Q Consensus 105 ~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~ 183 (433)
+....|.+.||+.- + .+..++++++++|+.. +..++++||+|++....|.+....+...-.+.. .
T Consensus 50 Pt~~~le~~la~LE----g--g~~a~~~sSGMaAi~~~l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g--------~ 115 (384)
T d1cs1a_ 50 PTRDVVQRALAELE----G--GAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGC--------Y 115 (384)
T ss_dssp HHHHHHHHHHHHHH----T--CSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTS--------C
T ss_pred HHHHHHHHHHHHHh----C--CCceEEecChHHHHHHHHhhcccccceecccccccchhhhhhhhhhcccc--------c
Confidence 34556777777664 2 3578888999999986 788999999999999999887666654432211 2
Q ss_pred eEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccC
Q 045431 184 KIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIP 263 (433)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~ 263 (433)
.+.++...+...+.. ...+++++||+-+|.|||..+.+ +++|+++|+++|+++|+|+.++.-.. ..|+ .+
T Consensus 116 ~~~~~d~~d~~~~~~--~~~~~t~~v~~EspsNP~l~v~D---i~~i~~ia~~~g~~~vVDNT~atP~~---~~Pl-~~- 185 (384)
T d1cs1a_ 116 RVLFVDQGDEQALRA--ALAEKPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPAL---QNPL-AL- 185 (384)
T ss_dssp EEEEECTTCHHHHHH--HHHTCCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTT---CCGG-GG-
T ss_pred ccccccCCCHHHHHh--hccccccEEEEeccccccceecc---HHHHhhhhhhcCcEEEEeccccCccc---cccc-cc-
Confidence 444444322111111 11478999999999999999999 88899999999999999999963111 1112 12
Q ss_pred CCCcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHH
Q 045431 264 GAKEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVI 342 (433)
Q Consensus 264 ~~~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~ 342 (433)
+-.|++.|.+|.++-.| .=.|.++++.+.+ ...+...........++.....+.+-++ .+.-+.
T Consensus 186 ---GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~-------~~~~~~~~~~~G~~~~p~~a~ll~rgL~-----TL~lRm 250 (384)
T d1cs1a_ 186 ---GADLVLHSCTKYLNGHSDVVAGVVIAKDPDV-------VTELAWWANNIGVTGGAFDSYLLLRGLR-----TLVPRM 250 (384)
T ss_dssp ---TCSEEEEETTTTTTCSSCCCCEEEEESSHHH-------HHHHHHHHHHHTCBCCHHHHHHHHHHHT-----THHHHH
T ss_pred ---CCCEEEEccccccccCCCcccccccCCchhh-------hhhhhhhhhhhhhccccccHHHHhhccc-----hhHHHH
Confidence 12389999999986222 2346666655543 2344444444444456665554444443 456667
Q ss_pred HHHHHHHHHHHHHHhhc
Q 045431 343 GFYKENTDIIVETFNSL 359 (433)
Q Consensus 343 ~~~~~~~~~l~~~l~~~ 359 (433)
++..++...+.+.|+++
T Consensus 251 ~~~~~nA~~lA~~L~~h 267 (384)
T d1cs1a_ 251 ELAQRNAQAIVKYLQTQ 267 (384)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcccC
Confidence 77889999999999987
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.64 E-value=4.1e-15 Score=142.55 Aligned_cols=288 Identities=13% Similarity=0.142 Sum_probs=171.3
Q ss_pred HHHHHHHhccCCCCCCcEEEcCChHHHHHHH-HHh--cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEe
Q 045431 112 AAIASTFYKDLGIEEGDIFVSDGAKCDISRL-QIV--FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYM 188 (433)
Q Consensus 112 ~~la~~l~~~~~~~~~~i~~~~G~~~al~~l-~~l--~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 188 (433)
..+..++.+..+.+.....+..|+++++.++ .+. ..+++.|+++.-.|+++...+..+|. ..+.+
T Consensus 116 ~~~~~~~~~~~g~~~~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k~~~~~g~------------~~~~v 183 (434)
T d2z67a1 116 NKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGM------------NMRLV 183 (434)
T ss_dssp HHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTC------------EEEEE
T ss_pred HHHHHHHHHhcCCCcceeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHHHHHHHhCC------------cceEE
Confidence 3333444455566555566666766666553 332 34789999999999999988888884 44444
Q ss_pred ecCccC-CcccCCC---C-------CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEecccccccc-CCC-
Q 045431 189 RCTAEN-GFFPDLS---T-------VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYIS-DDN- 255 (433)
Q Consensus 189 ~~~~~~-~~~~~~~---~-------~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~-~~~- 255 (433)
+...++ ....+++ + ..++.+|+.++|++++|.+.+ +++|.++|++||+++++|++|+.... ...
T Consensus 184 ~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~---l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~ 260 (434)
T d2z67a1 184 ETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNYYLEK 260 (434)
T ss_dssp CCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHHHHH
T ss_pred EeecCCCccCCCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccC---HHHHHHHHHHhCCeEEEeccchhhhhhcccc
Confidence 422111 1122221 1 235667777899999999877 88999999999999999999975321 111
Q ss_pred CCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh
Q 045431 256 PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF 335 (433)
Q Consensus 256 ~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~ 335 (433)
+.+.... +..+++.|++|.++ .+...|++..+++.+ .+.+.+.........+.....++...+. .
T Consensus 261 ~~~~~~~----~~D~~~~s~hK~l~-~~~g~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~a~l~~~~---~ 325 (434)
T d2z67a1 261 LKKAFKY----RVDAVVSSSDKNLL-TPIGGGLVYSTDAEF-------IKEISLSYPGRASATPVVNTLVSLLSMG---S 325 (434)
T ss_dssp HHHHHTS----CCSEEEEEHHHHHC-CCSSCEEEEESCHHH-------HHHHHTTSCSCBCSHHHHHHHHHHHHHH---H
T ss_pred ccccccC----CcceEEEcCccccc-cCCCccccccCcHHH-------HHHHHhhcccccccchHHHHHHHHHHHH---H
Confidence 1111111 22377889999886 444567776665443 2333332222222222333333333332 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhc----CCeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEec----CCCCC-----
Q 045431 336 KAVHEVIGFYKENTDIIVETFNSL----GFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTT----PGSGF----- 402 (433)
Q Consensus 336 ~~~~~~~~~~~~~~~~l~~~l~~~----g~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~----~g~~f----- 402 (433)
..++...++..++++++.+.|++. |..+........+.+.+. .+..++...|.+ .||... +...+
T Consensus 326 ~g~~~~~~~~~~~a~~l~~~L~~l~~~~g~~ll~~~~~~~~~~~~~-~~~~~l~~~L~~-~gI~g~~v~~~l~~~g~~~~ 403 (434)
T d2z67a1 326 KNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVN-SDPVEIAAKLYN-LRVTGPRGIKKTDHFGNCYL 403 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCCCSSEEEEECS-SCHHHHHHHHHH-TTEESCEEECTTCHHHHTCS
T ss_pred hcchhHHHHHHHHHHHHHHHHHHhhhhcCceecCCCCCceeeeecC-CCHHHHHHHHHH-cCCeeeehhhhccccCeeee
Confidence 344566666667777777766653 666665444444444443 355666666654 488542 11111
Q ss_pred CCCCCCeEEEee--ccChhHHHHHHHHHHHh
Q 045431 403 GPGGEGFIRVSA--FGHRGNVLEACKRFKHL 431 (433)
Q Consensus 403 ~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~ 431 (433)
.....+++|+++ +.+.+||+.++++|+++
T Consensus 404 ~~~~~~~l~~~~s~~~T~edID~~i~~L~kI 434 (434)
T d2z67a1 404 GTYTHDYIVMNAAIGVRTEDIVNSVSKLEKI 434 (434)
T ss_dssp SCCSCCEEEEECCTTCCHHHHHHHHHHHHTC
T ss_pred cccCCCeEEEecCCCCCHHHHHHHHHHHhcC
Confidence 112257899985 56899999999999874
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.63 E-value=2.8e-15 Score=145.08 Aligned_cols=331 Identities=13% Similarity=0.060 Sum_probs=187.1
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-H
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-L 142 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l 142 (433)
.+|||-+.....+..+..+.++ . .+-..|+...+..+|++.+++++ | .+++++++++++|..+ +
T Consensus 43 ~~id~~sd~~t~~~~~~~~a~~----~-----~gd~~y~~~~~~~~le~~~a~l~----g--~~~~~~~~sGt~A~~~a~ 107 (465)
T d1ax4a_ 43 VYIDLLTDSGTNAMSDHQWAAM----I-----TGDEAYAGSRNYYDLKDKAKELF----N--YDYIIPAHQGRGAENILF 107 (465)
T ss_dssp CSEECSCSSSCCCEEHHHHHHH----H-----TCCCCSSSCHHHHHHHHHHHHHH----C--CCEEEEESSHHHHHHHHH
T ss_pred eeeecccccchhhhhHHHHHHH----h-----hhhhhhccChHHHHHHHHHHHHH----C--CCEEEECCCcHHHHHHHH
Confidence 4688866544333344444332 2 23346888888899999999997 5 4689999999999876 5
Q ss_pred HHhcCCC-------CEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCc--------cCCcccCCCC-----
Q 045431 143 QIVFGSN-------VTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTA--------ENGFFPDLST----- 202 (433)
Q Consensus 143 ~~l~~~g-------d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~----- 202 (433)
..++++| ..++...+.|..+.......|. ..+...... ......+++.
T Consensus 108 ~~~~~~g~~~~~~~~~~i~~~~h~~t~~~~~~~~g~------------~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i 175 (465)
T d1ax4a_ 108 PVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGC------------KAINIVTEKAFDSETYDDWKGDFDIKKLKENI 175 (465)
T ss_dssp HHHHHHHHHTTCCSSCEEEESSCCHHHHHHHHHTTC------------EEEECBCGGGGCTTSCCTTTTCBCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCeEEeccchhhhhHHHHHHcCC------------eeecccccccCCCCCCCCccCccCHHHHHHHH
Confidence 5555444 3345555555555555555663 222222110 0111122211
Q ss_pred ---C-CCccEEEEcCCCCccc-cCCCHHHHHHHHHHHHHcCCEEEEeccccccccC------CC--CCcccccCC--CCc
Q 045431 203 ---V-ARTDIIFFCSPNNPTG-AAATREQLTRLVQFAKDNGSIIVYDSAYALYISD------DN--PRSIFEIPG--AKE 267 (433)
Q Consensus 203 ---~-~~~~~i~l~~p~nPtG-~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~------~~--~~~~~~~~~--~~~ 267 (433)
. ..+.++++..++|..| .++|.+++++|.++|++||+++|+|+++...... +. ......+.. ..-
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 255 (465)
T d1ax4a_ 176 AQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKY 255 (465)
T ss_dssp HHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGG
T ss_pred HhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhhhhcccccccccccccchhhhccccccc
Confidence 1 2334444445566553 6789999999999999999999999998632110 00 011111100 000
Q ss_pred ceEEEecccccccccccceeeeeccccccccCCcchhHHHHHH----Hhhc-cCCCcHHHHHHHHHhcCcCChhHHHHHH
Q 045431 268 VAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRI----VCTC-FNGASNISQAGGLACLSPEGFKAVHEVI 342 (433)
Q Consensus 268 ~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~ 342 (433)
..++..|.+|.. .+++.|+++.++.... ....... .... ..+.......++...+..... +...
T Consensus 256 ~d~~s~s~~k~~--~~~~~g~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~e~~~---~~~~ 324 (465)
T d1ax4a_ 256 ADALTMSAKKDP--LLNIGGLVAIRDNEEI------FTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTE---EEYL 324 (465)
T ss_dssp CSEEEEETTSTT--CCSSCEEEEESSCHHH------HHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTC---HHHH
T ss_pred cceeEeecccCc--ccccceeEeecchHHH------HHhhhccccccccCCCcchhhHHHHHHHhhhhHHhhh---HHHH
Confidence 114444556654 5666899888766421 1111111 1111 112233333322222221111 3344
Q ss_pred HHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCC---------CChHHHHHHHHHcCCeEecCCCCC-----------
Q 045431 343 GFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPG---------RSSWDVFSEILEKTHVVTTPGSGF----------- 402 (433)
Q Consensus 343 ~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~---------~~~~~~~~~l~~~~gi~v~~g~~f----------- 402 (433)
++..++.+++.+.|++.|+.+..+.++.++.++... .........++.+.||........
T Consensus 325 ~~~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~ 404 (465)
T d1ax4a_ 325 HYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQ 404 (465)
T ss_dssp HHHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSB
T ss_pred HHHHHHHHHHHHHHHhhcCccccCCCcceeeeehhhhcCCCccccchhHHHHHHHHHhcCceeccccccccccccccCCc
Confidence 555667788999999999888888788877766531 123445666667779876432211
Q ss_pred CCCCCCeEEEee---ccChhHHHHHHHHHHHhh
Q 045431 403 GPGGEGFIRVSA---FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 403 ~~~~~~~iRi~~---~~~~~~l~~~l~~l~~~l 432 (433)
.....+.+||++ ..|+++++..++.|++++
T Consensus 405 ~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~v~ 437 (465)
T d1ax4a_ 405 KHADMEFMRLTIARRVYTNDHMDYIADALIGLK 437 (465)
T ss_dssp CCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTH
T ss_pred cCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 012245799985 348999999999998864
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.62 E-value=9.3e-14 Score=129.04 Aligned_cols=348 Identities=12% Similarity=0.129 Sum_probs=205.9
Q ss_pred eEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCC---CCCCCCCCHHHHHHHHHHHhccCCCCCC----cEEEcCChHH
Q 045431 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYS---GYGAEQGEKPLRAAIASTFYKDLGIEEG----DIFVSDGAKC 137 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~Y~~~~g~~~lr~~la~~l~~~~~~~~~----~i~~~~G~~~ 137 (433)
-|+|-..++ -.++.+++++...+..... .++. -|+-..-..++.....+...+.++++.. ||-..||+++
T Consensus 29 ~l~LiaSEN--~~S~~v~~algS~l~nkYa-eG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~a~w~vNVqp~SGs~A 105 (463)
T d2a7va1 29 GLELIASEN--FCSRAALEALGSCLNNKYS-EGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPA 105 (463)
T ss_dssp SEECCTTCC--CCCHHHHHHHTSGGGTCCC-CC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHH
T ss_pred CeeEeccCC--cCCHHHHHHhcchhccccc-CCCCCccccCCchhHHHHHHHHHHHHHHHhCCCchhccCCccccccHHH
Confidence 588877765 3678888888877753221 1111 2322333555554444444445677765 7889999998
Q ss_pred HHHHHHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC------CCCccEEEE
Q 045431 138 DISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST------VARTDIIFF 211 (433)
Q Consensus 138 al~~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~l 211 (433)
.+.++.++++|||+|+..++...++..--...+... ......+.+...+.++++++ ..|+++ ..+|++|++
T Consensus 106 n~av~~all~pgD~Im~l~l~~GGHlshg~~~~~~~--~~~~g~~~~~~~Y~~d~~~~-~IDyd~~~~~a~~~kPklIi~ 182 (463)
T d2a7va1 106 NLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKR--ISATSIFFESMPYKLNPKTG-LIDYNQLALTARLFRPRLIIA 182 (463)
T ss_dssp HHHHHHHHCCSCEECCC---------------------------------CCBCTTTC-SBCHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHcCCCceEEeeccCcCccccccccccccc--ccceeeEeeeeeeeccCCCC-cCcHHHHHHHHhhcCCceEEe
Confidence 888899999999999998888776642221100000 00011113455555555432 334332 358998887
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccc-cccCCC-CCcccccCCCCcceEEEecccccccccccceeee
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYAL-YISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWT 289 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~-~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l 289 (433)
-.-.+|-- ++ .+++.++|++.|.+++.|-+|-. +...+. +.|+. . .| |+.+|.+|+| +|-|-|.+
T Consensus 183 G~S~y~r~--~d---~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~-~---aD--vvt~tTHKTl--rGPrgGiI 249 (463)
T d2a7va1 183 GTSAYARL--ID---YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK-H---AD--IVTTTTHKTL--RGARSGLI 249 (463)
T ss_dssp CCSSCCSC--CC---HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG-T---CS--EEEEESSGGG--CSCSCEEE
T ss_pred cccccccc--cC---HHHHHHHhhcccceEEechhhhhHHhhhhhhcChhh-h---hh--hhhchhhhhh--cCCCceEE
Confidence 54455442 34 78888889999999999999864 655554 44442 2 12 7788999998 79999999
Q ss_pred eccccccccC-------CcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-hHHHHHHHHHHHHHHHHHHHHhhcCC
Q 045431 290 VIPKELLFSD-------GFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-KAVHEVIGFYKENTDIIVETFNSLGF 361 (433)
Q Consensus 290 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~g~ 361 (433)
.+.++....+ ...+.+.+.+.......+.+.+.+.|+.+.-..+.. ...+...+++.++.+.|.+.|.+.|+
T Consensus 250 l~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~~~G~ 329 (463)
T d2a7va1 250 FYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGY 329 (463)
T ss_dssp EEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEcccccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9887431000 012345666655555555666666655543321211 23577788889999999999999999
Q ss_pred eeec-CCCccEEEEECCC-CChHHHHHHHHHcCCeEec----CCCCCCCCCCCeEEEee------ccChhHHHHHHHHHH
Q 045431 362 KVYG-GKNAPYVWVQFPG-RSSWDVFSEILEKTHVVTT----PGSGFGPGGEGFIRVSA------FGHRGNVLEACKRFK 429 (433)
Q Consensus 362 ~~~~-~~~g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~----~g~~f~~~~~~~iRi~~------~~~~~~l~~~l~~l~ 429 (433)
.++. ......+++++.+ ......+...|++.||.++ |++. .+..++.|||.. ...++|+++..+.|.
T Consensus 330 ~vv~ggTdnHlvlvdl~~~~~~G~~ae~~Le~~gI~~Nkn~iP~D~-~~~~~sGiRiGT~a~TtrG~~e~dm~~iA~~I~ 408 (463)
T d2a7va1 330 SLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDR-SAITPGGLRLGAPALTSRQFREDDFRRVVDFID 408 (463)
T ss_dssp EEGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCC-CSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHH
T ss_pred eeecCCCCCceeeeeccccCCCHHHHHHHHHhccCccCCccCCCCC-CCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHH
Confidence 9864 3445678899863 2345566677788899985 4442 223356799994 225888888888877
Q ss_pred Hhh
Q 045431 430 HLY 432 (433)
Q Consensus 430 ~~l 432 (433)
+++
T Consensus 409 ~~l 411 (463)
T d2a7va1 409 EGV 411 (463)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.60 E-value=1.5e-14 Score=139.15 Aligned_cols=296 Identities=12% Similarity=0.029 Sum_probs=168.7
Q ss_pred HHHHHHHHHHHhccCCCCC-CcEEEcCChHH-HHHH-HHH---hcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccc
Q 045431 108 KPLRAAIASTFYKDLGIEE-GDIFVSDGAKC-DISR-LQI---VFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEK 181 (433)
Q Consensus 108 ~~lr~~la~~l~~~~~~~~-~~i~~~~G~~~-al~~-l~~---l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~ 181 (433)
..+...+.+++.+.++.+. ...++|+|+++ ++.+ +.+ ...+++.|+++...|+++...+..+|.
T Consensus 93 ~~le~~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~g~---------- 162 (445)
T d3bc8a1 93 NKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGF---------- 162 (445)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTC----------
T ss_pred HHHHHHHHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHHcCC----------
Confidence 4577777787776445542 44556666654 4433 222 246779999999999999999999995
Q ss_pred cceEEEeecCc-cCCcccCCCC---------CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccc
Q 045431 182 YGKIEYMRCTA-ENGFFPDLST---------VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYI 251 (433)
Q Consensus 182 ~~~~~~~~~~~-~~~~~~~~~~---------~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~ 251 (433)
..+.+.... +.....+++. .+++.+|++++|+|++|.+-+ +++|.++|++||+++++|++|+...
T Consensus 163 --~~~~v~~~~~~~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~---~~~i~~~~~~~~~~l~vD~a~~~~~ 237 (445)
T d3bc8a1 163 --EPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR---LEELAVICANYDIPHVVNNAYGLQS 237 (445)
T ss_dssp --EEEEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTC
T ss_pred --eeEEEEeeccCcccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehh---HHHHHHHHHHhCCcEEEEccchhhh
Confidence 444443211 1122233221 245778888899999999877 8899999999999999999998532
Q ss_pred cC-CCC-CcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHh
Q 045431 252 SD-DNP-RSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLAC 329 (433)
Q Consensus 252 ~~-~~~-~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 329 (433)
.. ... .....+. +..++..|.+|+++ .+...|+++.++... .+.+...............+.+....
T Consensus 238 ~~~~~~~~~~~~~~---~vd~~~~s~hK~~~-~p~g~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (445)
T d3bc8a1 238 SKCMHLIQQGARVG---RIDAFVQSLDKNFM-VPVGGAIIAGFNEPF-------IQDISKMYPGRASASPSLDVLITLLS 306 (445)
T ss_dssp HHHHHHHHHHHHHS---CCCEEEEEHHHHHS-CCSSCEEEEESCHHH-------HHHHHHHSCSCBCSHHHHHHHHHHHH
T ss_pred hhccccchhccCcC---CcceEEecCccccc-cCCCCceeeeCChHH-------HHHHHHHHhhcccCcchHHHHHHHHH
Confidence 11 111 1111221 12377788999886 444467777765543 23333222222222223333333333
Q ss_pred cCcCChhHHHHHHHHHHHHHHHHHHHHhh----cCCeeec-CCCccEEEEECC------CCChHHHHHHHHHcCCeEec-
Q 045431 330 LSPEGFKAVHEVIGFYKENTDIIVETFNS----LGFKVYG-GKNAPYVWVQFP------GRSSWDVFSEILEKTHVVTT- 397 (433)
Q Consensus 330 l~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~g~~~~~-~~~g~~~~~~~~------~~~~~~~~~~l~~~~gi~v~- 397 (433)
+. ........+...++.+++.+.|++ .+..+.. +......++.+. ..+..++... +.+.||...
T Consensus 307 ~g---~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~-L~~~gI~~~~ 382 (445)
T d3bc8a1 307 LG---CSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSM-LFTRQVSGAR 382 (445)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHHHHH-HHHTTCCSCE
T ss_pred Hh---hhcchhhHHHHHHHHHHHHHHHHHHHhhcCceeecCCCCCcceEEEeeeccccCCCCHHHHHHH-HHHcCCCcce
Confidence 22 223344455555555555555544 3554433 233445555543 1222334444 444476321
Q ss_pred ---CCC-------C---CC----CCCCCeEEEee--ccChhHHHHHHHHHHHhhC
Q 045431 398 ---PGS-------G---FG----PGGEGFIRVSA--FGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 398 ---~g~-------~---f~----~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l~ 433 (433)
++. . |+ .....++|+++ +.+++|++..+++|+++++
T Consensus 383 ~~~~~~~~~i~~~~~~~~g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk 437 (445)
T d3bc8a1 383 AVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLN 437 (445)
T ss_dssp EECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred eeccccccchhhhhhhhcCCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHH
Confidence 111 0 11 11235688885 4589999999999998863
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.60 E-value=2.3e-13 Score=126.80 Aligned_cols=221 Identities=14% Similarity=0.099 Sum_probs=140.5
Q ss_pred CCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhC-Ccccccccccccc
Q 045431 106 GEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMG-QTGEFQKDAEKYG 183 (433)
Q Consensus 106 g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g-~~~~~~~~~~~~~ 183 (433)
....|.+.||+.- + .+..++++++++|+.. +..++++||+|++..+.|.+....+...- ..+ .
T Consensus 59 T~~~LE~~la~LE----~--~~~a~~~~SGmaAi~~~~~~l~~~gd~il~~~~~Yg~t~~l~~~~~~~~g---------i 123 (421)
T d2ctza1 59 TVDVLEKRLAALE----G--GKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLG---------I 123 (421)
T ss_dssp HHHHHHHHHHHHH----T--CSEEEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTT---------C
T ss_pred HHHHHHHHHHHHh----C--CCeEEEecChHHHHHHHHHhhcccccceeecCCcCCchhHHHHHHHhhcc---------c
Confidence 3455666666653 2 3567788888899886 78999999999999999988776665332 112 2
Q ss_pred eEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccc--cccCCCCCcccc
Q 045431 184 KIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYAL--YISDDNPRSIFE 261 (433)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~--~~~~~~~~~~~~ 261 (433)
.+.++..+.... .......+++++|++-+|.|||..+.+ +++|+++|+++|+++|+|+.++. +.. .|+ .
T Consensus 124 ~~~~~d~~~~~~-~~~~~~~~~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~g~~~vvDnT~a~tP~~~----~Pl-~ 194 (421)
T d2ctza1 124 EVRFTSREERPE-EFLALTDEKTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGMGGYLL----RPL-A 194 (421)
T ss_dssp EEEECCTTCCHH-HHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGGGTSC----CGG-G
T ss_pred cceecccccCcc-hhccccCCCceEEEEcCCCcceeEecc---hHHHHHHHHhcCCceEecccccccceec----ccc-c
Confidence 555554322111 111112478999999999999999988 88999999999999999999872 211 122 1
Q ss_pred cCCCCcceEEEecccccccccccc-eeeeeccccccccCCc--------------chhHH------HHH----HHhhccC
Q 045431 262 IPGAKEVAIETSSFSKYAGFTGVR-LGWTVIPKELLFSDGF--------------PVAKD------FNR----IVCTCFN 316 (433)
Q Consensus 262 ~~~~~~~vi~i~S~sK~~~~~G~r-~G~l~~~~~~~~~~~~--------------~~~~~------~~~----~~~~~~~ 316 (433)
+ +-.|++.|.+|.++-.+-- .|.++.+++.+....+ +..+. +.+ .......
T Consensus 195 ~----GaDiVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 270 (421)
T d2ctza1 195 W----GAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQ 270 (421)
T ss_dssp G----TCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCC
T ss_pred c----CCcEEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhccHHHHHHHHHHHHHhccC
Confidence 2 2239999999998633333 4566666554321100 00011 100 1111233
Q ss_pred CCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc
Q 045431 317 GASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 317 ~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 359 (433)
..++.....+.+-++ .+.-+.++..++...+.+.|+++
T Consensus 271 ~~sP~~a~l~~rgl~-----TL~lRm~~~~~nA~~vA~~L~~h 308 (421)
T d2ctza1 271 ALGPFEAWVVLLGME-----TLSLRAERHVENTLHLAHWLLEQ 308 (421)
T ss_dssp CCCHHHHHHHHHHHT-----THHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHhcCCc-----chhhHHHHHHHHHHHHHhhhccC
Confidence 355555544444443 45677788889999999999987
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.59 E-value=9.5e-14 Score=129.41 Aligned_cols=348 Identities=13% Similarity=0.150 Sum_probs=221.1
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCC--C-CCCCCCCHHHHHHHHHHHhccCCCCC----CcEEEcCChH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYS--G-YGAEQGEKPLRAAIASTFYKDLGIEE----GDIFVSDGAK 136 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~-Y~~~~g~~~lr~~la~~l~~~~~~~~----~~i~~~~G~~ 136 (433)
..|+|-..++ -.++.+++++...+..... .++. + |+-..-..++.....+...+.++.++ -+|...||+.
T Consensus 32 ~~l~LIaSEN--~~S~~v~~algS~l~nkYa-eG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~ 108 (470)
T d1rv3a_ 32 VGLELIASEN--FASRAVLEALGSCLNNKYS-LGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSP 108 (470)
T ss_dssp SSEECCTTCC--CCCHHHHHHHTSGGGTCCC-CEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHH
T ss_pred cCceEecCCC--cCCHHHHHHhcchhccccc-CCCCCccccCCchhHHHHHHHHHHHHHHHhCCChhhccccccccCCcc
Confidence 3588877775 3678888888887753221 1111 2 32222333333333333344556543 3677888888
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC------CCCccEEE
Q 045431 137 CDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST------VARTDIIF 210 (433)
Q Consensus 137 ~al~~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~ 210 (433)
+.+..+.++++|||+|+..+....++.......+... ......+.+...++++++.+ ..|+++ ..+|++|+
T Consensus 109 An~av~~all~pgD~im~~~l~~GGHlshg~~~~~~~--~~~~~~~~~~~~y~v~~~~~-~IDyd~l~~~a~~~kPklIi 185 (470)
T d1rv3a_ 109 ANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKK--ISATSIFFESMAYKVNPDTG-YIDYDRLEENARLFHPKLII 185 (470)
T ss_dssp HHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCB--CSHHHHHSEEEEECBCTTTC-SBCHHHHHHHHHHHCCSEEE
T ss_pred HHHHHHHHhcCCCCeEeeeccccCCcccccccccCCC--cccccceeEeeEEEEecccC-cccHHHHHHHHHhhCcceEe
Confidence 8888899999999999999888777643321111111 01111224677888877643 334332 35899888
Q ss_pred EcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccc-cccCCC-CCcccccCCCCcceEEEecccccccccccceee
Q 045431 211 FCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYAL-YISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGW 288 (433)
Q Consensus 211 l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~-~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~ 288 (433)
+-.-.+|- .++ .+++.++|.+.|.+|+.|-+|-. +...+. +.|+ .. . .|+.+|.+|+| +|-|-|.
T Consensus 186 ~G~S~y~r--~~d---~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl-~~---a--Dvvt~tTHKtl--rGPrgGi 252 (470)
T d1rv3a_ 186 AGTSCYSR--NLD---YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPF-EH---C--HVVTTTTHKTL--RGCRAGM 252 (470)
T ss_dssp ECCSSCCS--CCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGG-GT---C--SEEEEESSGGG--CCCSCEE
T ss_pred echhhccc--cCC---HHHHHHHHhccCCeEEecchhhhhhccccccCChh-he---e--eeeeeehhhhc--cCCcceE
Confidence 74444443 234 78888889999999999999864 555554 4444 22 1 28889999998 7989999
Q ss_pred eeccccccc-------cCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcC-ChhHHHHHHHHHHHHHHHHHHHHhhcC
Q 045431 289 TVIPKELLF-------SDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPE-GFKAVHEVIGFYKENTDIIVETFNSLG 360 (433)
Q Consensus 289 l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~g 360 (433)
+.+.++.-. .....+.+.+.+.......+.+.+.+.|+.+.-..+ .....+...+++.++.+.|.+.|.+.|
T Consensus 253 I~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~~G 332 (470)
T d1rv3a_ 253 IFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELG 332 (470)
T ss_dssp EEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEccccccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 988765310 011233566666554555555666666555432212 123457788889999999999999999
Q ss_pred Ceeec-CCCccEEEEECC--CCChHHHHHHHHHcCCeEec----CCCCCCCCCCCeEEEee------ccChhHHHHHHHH
Q 045431 361 FKVYG-GKNAPYVWVQFP--GRSSWDVFSEILEKTHVVTT----PGSGFGPGGEGFIRVSA------FGHRGNVLEACKR 427 (433)
Q Consensus 361 ~~~~~-~~~g~~~~~~~~--~~~~~~~~~~l~~~~gi~v~----~g~~f~~~~~~~iRi~~------~~~~~~l~~~l~~ 427 (433)
+.+.. ......+++++. +.+ ...+..+|++.||.++ |++. .+..++.|||.. ...++|+++..+-
T Consensus 333 ~~v~~ggTdnHlvlvdl~~~g~~-g~~ae~~Le~~gI~~Nkn~iP~D~-~~~~~sGiRiGT~alTtrG~~e~dm~~iA~~ 410 (470)
T d1rv3a_ 333 YKIVTGGSDNHLILVDLRSKGTD-GGRAEKVLEACSIACNKNTCPGDK-SALRPSGLRLGTPALTSRGLLEKDFQKVAHF 410 (470)
T ss_dssp CEEGGGSCSSSEEEEEGGGGTCC-HHHHHHHHHHTTEECEEECCSSCS-CTTSCCEEEEECHHHHHTTCCHHHHHHHHHH
T ss_pred ceeccCCCCCceEEEeecccCCc-HHHHHHHHHHcCcEECCCcCCCCC-CCCCCCeeEecCHHHHhCCCCHHHHHHHHHH
Confidence 99863 345567888886 334 4456777788899884 5543 233457799994 2368888888888
Q ss_pred HHHhh
Q 045431 428 FKHLY 432 (433)
Q Consensus 428 l~~~l 432 (433)
|.+++
T Consensus 411 I~~~l 415 (470)
T d1rv3a_ 411 IHRGI 415 (470)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.59 E-value=1.2e-13 Score=132.44 Aligned_cols=349 Identities=8% Similarity=0.009 Sum_probs=195.4
Q ss_pred HHHHHHhcCCCCceEEecCCCC--CC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCc
Q 045431 52 RKAAHMLKYPDAEVISLGIGDT--TE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGD 128 (433)
Q Consensus 52 ~~~~~~~~~~~~~~i~l~~g~~--~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~ 128 (433)
.++......+++..||+..|.. .+ ..+|++.+++.+++..... .....+ .......+.+.+++.+....+-+.+.
T Consensus 42 g~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~-~~~~~~-~~~~~~~~a~~lae~l~~~~~~~~~~ 119 (461)
T d1ohwa_ 42 SRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTF-INRPAL-GILPPENFVEKLRESLLSVAPKGMSQ 119 (461)
T ss_dssp CBBTEEEBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHH-HCCCCT-TTSCBTTHHHHHHHTGGGGCCTTCCE
T ss_pred eecCEEEECCCCEEEEcccCHHHHhhcCCcHHHHHHHHHHHhhhhh-cccccc-cccchHHHHHHHHHHHHhhhccCcce
Confidence 3344445567788999865532 22 3577889999887754321 111111 11223455667777765433445678
Q ss_pred EEEcCChHHHHHH-HHHh----------------------------cCCCCEEEEeCCCChhhhhhHHHhCCcccccc-c
Q 045431 129 IFVSDGAKCDISR-LQIV----------------------------FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQK-D 178 (433)
Q Consensus 129 i~~~~G~~~al~~-l~~l----------------------------~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~-~ 178 (433)
+++++++++|+.. +... ..+...|+....+|++.......+.....+.. .
T Consensus 120 v~f~~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~ 199 (461)
T d1ohwa_ 120 LITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKID 199 (461)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHTT
T ss_pred eeeecchhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccccCCccccccc
Confidence 9999999999885 4211 12335788888888875443333321111100 0
Q ss_pred ccccceEEEeecCcc-CCc--------------ccCCC--------CCCCccEEEEcCC-CCccc-cCCCHHHHHHHHHH
Q 045431 179 AEKYGKIEYMRCTAE-NGF--------------FPDLS--------TVARTDIIFFCSP-NNPTG-AAATREQLTRLVQF 233 (433)
Q Consensus 179 ~~~~~~~~~~~~~~~-~~~--------------~~~~~--------~~~~~~~i~l~~p-~nPtG-~~~~~~~~~~i~~~ 233 (433)
... ......+.... ... ..+++ ...++.+|+ ..| +...| ...+++.+++|.++
T Consensus 200 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavi-vEPi~g~~G~~~~~~~fl~~lr~l 277 (461)
T d1ohwa_ 200 IPS-FDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGII-VEPIQSEGGDNHASDDFFRKLRDI 277 (461)
T ss_dssp CCC-CCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEE-ECSSBCTTTCBCCCHHHHHHHHHH
T ss_pred ccc-cCCcccccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceee-eccccccccccCchhhHHHHHHHH
Confidence 000 00001110000 000 00011 113444544 456 44445 45688999999999
Q ss_pred HHHcCCEEEEeccccccccCCCCCcccccCC--CCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHH
Q 045431 234 AKDNGSIIVYDSAYALYISDDNPRSIFEIPG--AKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIV 311 (433)
Q Consensus 234 a~~~~~~li~De~~~~~~~~~~~~~~~~~~~--~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~ 311 (433)
|++||+++|.||++..+...|.......+.- .+| ++ +++|.++ .| +......+. ......
T Consensus 278 c~~~gillI~DEV~tG~gRtG~~~~~e~~gi~~~PD-iv---~~gK~l~-~g----~~~~~~~~~---------~~~~~~ 339 (461)
T d1ohwa_ 278 SRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPAD-VM---TFSKKMM-TG----GFFHKEEFR---------PNAPYR 339 (461)
T ss_dssp HHHTTCEEEEECTTTCSSTTSSSSGGGGGCCSSCCS-EE---EECGGGS-SE----EEEECGGGS---------CSSTTS
T ss_pred HHhhCcceeccccccccccccccccccccccccCch-hh---hhhhccc-cc----ccccccccc---------cccccc
Confidence 9999999999999998876665444333321 244 23 6889886 43 333222221 111122
Q ss_pred hhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-----C-CeeecCCCccEEEEECCCCCh-HHH
Q 045431 312 CTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-----G-FKVYGGKNAPYVWVQFPGRSS-WDV 384 (433)
Q Consensus 312 ~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----g-~~~~~~~~g~~~~~~~~~~~~-~~~ 384 (433)
...+++.++++.+++.+.|+.... +++.++.++..+++.+.|+++ . +.-+.. .|+++-++++.... .++
T Consensus 340 ~~~T~~g~p~~~aaa~a~l~~i~~---~~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~vrG-~Gl~~~ie~~~~~~~~~i 415 (461)
T d1ohwa_ 340 IFNTWLGDPSKNLLLAEVINIIKR---EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRG-RGTFCSFDTPDESIRNKL 415 (461)
T ss_dssp SCCSCSSCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEE-ETTEEEEECSSHHHHHHH
T ss_pred cccccccccccchhhcccchhhhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEeee-eeEEEEEEcCCHHHHHHH
Confidence 345566788888888887763221 233344445555555555443 1 222222 46777788874333 355
Q ss_pred HHHHHHcCCeEecCCCCCCCCCCCeEEEe--eccChhHHHHHHHHHHHhhC
Q 045431 385 FSEILEKTHVVTTPGSGFGPGGEGFIRVS--AFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 385 ~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l~ 433 (433)
...+++ +||.+.+. +++.|||. +..+++++++++++|.++|+
T Consensus 416 ~~~~~~-~Gll~~~~------~~~~ir~~PpL~it~~eid~~~~~l~~~l~ 459 (461)
T d1ohwa_ 416 ISIARN-KGVMLGGC------GDKSIRFRPTLVFRDHHAHLFLNIFSDILA 459 (461)
T ss_dssp HHHHHH-TTEECEEE------TTTEEECCCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-CCeEEeeC------CCCEEEEeCCcCCCHHHHHHHHHHHHHHHh
Confidence 555555 59999763 24689998 56799999999999999873
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.58 E-value=2.5e-12 Score=120.56 Aligned_cols=306 Identities=14% Similarity=0.137 Sum_probs=186.1
Q ss_pred hHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHh-cCCCCEEEEe
Q 045431 78 PEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIV-FGSNVTMAVQ 155 (433)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l-~~~gd~Vl~~ 155 (433)
..+-.+++.+.+.. +..-+....-..++.+.+|+++ +. .+.+.+++++.|+.+ +.++ +++||+|+++
T Consensus 12 ~~~~~~~~~~~l~~-----g~~~~~~g~~v~~fE~~~a~~~----g~--~~~v~~~SGt~Al~lal~~l~~~~gdeVi~p 80 (384)
T d1b9ha_ 12 DDAERNGLVRALEQ-----GQWWRMGGDEVNSFEREFAAHH----GA--AHALAVTNGTHALELALQVMGVGPGTEVIVP 80 (384)
T ss_dssp CHHHHHHHHHHHHT-----SCCBTTTCSHHHHHHHHHHHHT----TC--SEEEEESCHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred CHHHHHHHHHHHHc-----CCeeecCCHHHHHHHHHHHHHH----Cc--CeEEEeCCHHHHHHHHHHHcCCCCCCEEEEe
Confidence 45567778887763 2111122345788999999996 44 467888888888887 5555 6999999999
Q ss_pred CCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCC-----CCCCccEEEEcCCCCccccCCCHHHHHHH
Q 045431 156 DPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS-----TVARTDIIFFCSPNNPTGAAATREQLTRL 230 (433)
Q Consensus 156 ~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~l~~p~nPtG~~~~~~~~~~i 230 (433)
..+|......+...| ..+++++.+++ .+..+++ ..+++++|++ .+..|...+ +.+|
T Consensus 81 ~~t~~a~~~ai~~~g------------~~p~~~d~~~~-~~~~d~~~~~~~i~~~tk~i~~---~~~~g~~~d---~~~i 141 (384)
T d1b9ha_ 81 AFTFISSSQAAQRLG------------AVTVPVDVDAA-TYNLDPEAVAAAVTPRTKVIMP---VHMAGLMAD---MDAL 141 (384)
T ss_dssp SSSCTHHHHHHHHTT------------CEEEEECBCTT-TCCBCHHHHHHHCCTTEEEECC---BCGGGCCCC---HHHH
T ss_pred ccccccccccccccc------------ccccccccccc-ccccchhhhccccccccccccc---ccccccccc---cccc
Confidence 999999999999999 47777777654 3333433 2467888764 566777666 7888
Q ss_pred HHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHH
Q 045431 231 VQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRI 310 (433)
Q Consensus 231 ~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~ 310 (433)
.++|+++++++|+|.+++....-. ...+..+ .+-.++-.+.+|.++ .| .-|.++++++.+ .+.++..
T Consensus 142 ~~~~~~~~i~lieD~a~a~ga~~~-g~~~g~~---g~~~~~Sf~~~K~i~-~g-~GG~i~t~~~~~-------~~~~~~~ 208 (384)
T d1b9ha_ 142 AKISADTGVPLLQDAAHAHGARWQ-GKRVGEL---DSIATFSFQNGKLMT-AG-EGGAVVFPDGET-------EKYETAF 208 (384)
T ss_dssp HHHHHHHTCCBCEECTTCTTCEET-TEEGGGS---SSCEEEECCTTSSSC-SS-SCEEEEECTTCH-------HHHHHHH
T ss_pred hhhhhhhhhhhhhhhceecccccC-CEecCcc---cccceeccccccccc-cc-ccchhhhhhHHH-------HHHHHHH
Confidence 899999999999999998643221 1222222 222233344588875 33 357777776654 2333333
Q ss_pred Hhhc-----------------cCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecC-----C
Q 045431 311 VCTC-----------------FNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGG-----K 367 (433)
Q Consensus 311 ~~~~-----------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~-----~ 367 (433)
.... ....+.+..+.+..-|+ .+++..++-+++.+++.+.|++. ++..... .
T Consensus 209 ~~~g~~~~~~~~~~~~~~~G~n~rms~l~Aaig~~qL~-----~ld~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~ 283 (384)
T d1b9ha_ 209 LRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLA-----RLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADR 283 (384)
T ss_dssp HHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHT-----THHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCB
T ss_pred HhcCCCCccccccccccccccccccccchhhhhhhhhh-----hcccchhhhhhhhhhhhhhhhcccccccccccccccc
Confidence 2211 11233443333333333 34566666677788888888876 5533211 1
Q ss_pred C-ccEEEEECCCCCh--H-HHHHHHHHcCCeEecCCCC----------CCCCC-----------------CCeEEEeec-
Q 045431 368 N-APYVWVQFPGRSS--W-DVFSEILEKTHVVTTPGSG----------FGPGG-----------------EGFIRVSAF- 415 (433)
Q Consensus 368 ~-g~~~~~~~~~~~~--~-~~~~~l~~~~gi~v~~g~~----------f~~~~-----------------~~~iRi~~~- 415 (433)
. ..+..+.++.... . ++.+.| +++||.+++... ++... +..+.|-+.
T Consensus 284 ~~~~~~~~~~~~~~~~~Rd~l~~~L-~~~GI~~~~~y~plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~ 362 (384)
T d1b9ha_ 284 NSHYMAMFRIPGLTEERRNALVDRL-VEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRV 362 (384)
T ss_dssp CCCSEEEEECTTCCHHHHHHHHHHH-HHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGG
T ss_pred cccccccceecccccccHHHHHHHH-HHCCCCeeeeCcchhcCHHHHhcCCCcccccccccCCHHHHHHHhCEEEccCCC
Confidence 1 1234455553332 2 355555 566998876421 00000 124666643
Q ss_pred -cC-hhHHHHHHHHHHHhh
Q 045431 416 -GH-RGNVLEACKRFKHLY 432 (433)
Q Consensus 416 -~~-~~~l~~~l~~l~~~l 432 (433)
.+ ++|++..++.|++++
T Consensus 363 ~Lt~e~ei~~I~~~i~~~l 381 (384)
T d1b9ha_ 363 LLAGEPELHATAEIIADAV 381 (384)
T ss_dssp GGSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 24 578999999999876
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.57 E-value=1.1e-13 Score=129.24 Aligned_cols=333 Identities=11% Similarity=0.070 Sum_probs=176.9
Q ss_pred eEEecCCCCCCCChHHHHHHHHHHHhhcccC-CCCCCCCC-CCCCHHHHHHHHHHHhccCCCCC-CcEEEcCChHHHH-H
Q 045431 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQ-EGYSGYGA-EQGEKPLRAAIASTFYKDLGIEE-GDIFVSDGAKCDI-S 140 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~Y~~-~~g~~~lr~~la~~l~~~~~~~~-~~i~~~~G~~~al-~ 140 (433)
.++|+-|. ...|+.|++++.+.+.++.+. .+....++ ..-..++-+.+.+.+.+-++++. .+|++++|++.+. .
T Consensus 4 ~~~F~pGP--~~vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~e 81 (361)
T d2c0ra1 4 AYNFNAGP--AALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFA 81 (361)
T ss_dssp CEECCSSS--CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHH
T ss_pred CcccCCCC--cCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHH
Confidence 46776653 468999999999987653221 11111111 11223333334444444447753 3788888876665 4
Q ss_pred H-HHHhcCCCCEEEEeCCCChh--hhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC-CCCccEEEEcCCC
Q 045431 141 R-LQIVFGSNVTMAVQDPSYPA--YVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST-VARTDIIFFCSPN 215 (433)
Q Consensus 141 ~-l~~l~~~gd~Vl~~~p~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~i~l~~p~ 215 (433)
+ +..+..+|+++++..-.... .....+..| ..+..+..+.......+ ++. ....+... .+
T Consensus 82 a~~~~l~~~~~~~l~~~~g~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~ 146 (361)
T d2c0ra1 82 MIPMNFLKEGQTANYVMTGSWASKALKEAKLIG------------DTHVAASSEASNYMTLPKLQEIQLQDNAAY---LH 146 (361)
T ss_dssp HHHHHHCCTTCEEEEEECSHHHHHHHHHHHHHS------------CEEEEEECGGGTTCSCCCGGGCCCCTTEEE---EE
T ss_pred HHHhccccCCCceEEEeechhhhhhhhhhhhcC------------ceeeeeccccccccchhhhhhhcccCcceE---EE
Confidence 5 46777889998776544433 234444555 35555555444333322 222 22333333 35
Q ss_pred CccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccc
Q 045431 216 NPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKEL 295 (433)
Q Consensus 216 nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~ 295 (433)
|.||...+ ..+|.++|+++|+++++|.+.+.. ..+..+..+ + +.+.|.+|.++++|. .++++.....
T Consensus 147 ~~tg~~~~---~~~i~~~~~~~~al~~vDavss~g---~~~id~~~~----d--i~~~s~~k~~~~~~~-~~~~~~~~~~ 213 (361)
T d2c0ra1 147 LTSNETIE---GAQFKAFPDTGSVPLIGDMSSDIL---SRPFDLNQF----G--LVYAGAQKNLGPSGV-TVVIVREDLV 213 (361)
T ss_dssp EESEETTT---TEECSSCCCCTTSCEEEECTTTTT---SSCCCGGGC----S--EEEEETTTTTCCSSC-EEEEEEGGGS
T ss_pred Eeccccee---cceEEEeeccCCceEEEEeecccc---ccccccccc----e--eEEEecccccccccC-cEEEEEhHHh
Confidence 77888887 556778899999999999998842 124444333 2 556678999986663 3333333332
Q ss_pred cccCCc-chh---HHHHHHHhhccCCCcHHHHHHHHHhcC-cCChhHHHHHHHHHHHHHHHHHHHHhhc-CC-eeecC--
Q 045431 296 LFSDGF-PVA---KDFNRIVCTCFNGASNISQAGGLACLS-PEGFKAVHEVIGFYKENTDIIVETFNSL-GF-KVYGG-- 366 (433)
Q Consensus 296 ~~~~~~-~~~---~~~~~~~~~~~~~~~~~~q~~~~~~l~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~-~~~~~-- 366 (433)
...... ... ..+...... ....+......+..... ............+.+.++..+....... .. .....
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (361)
T d2c0ra1 214 AESPKHLPTMLRYDTYVKNNSL-YNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVD 292 (361)
T ss_dssp SSCCTTSCGGGCHHHHHHTTTC-SSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGG
T ss_pred hhCccccccccccccccccccc-cccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhhhhcccccccCCChh
Confidence 211100 000 111111111 11122222221221111 0111223455555556666666666554 22 22211
Q ss_pred -CCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec--cChhHHHHHHHHHHHhh
Q 045431 367 -KNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF--GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 367 -~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~l~~~l~~l~~~l 432 (433)
.+...+.+.++.....+.+...++++||.+..|...- +.|||+++ .+.||++.+++.|+++.
T Consensus 293 ~rS~~~~~~~~~~~~~~~~~~~~L~~~GI~~~~G~~~~----g~~RIs~~~~~~~edv~~Lv~~l~~~~ 357 (361)
T d2c0ra1 293 SRSDMNITFRLASEELEKEFVKASEQEGFVGLKGHRSV----GGLRASIYNAVPYESCEALVQFMEHFK 357 (361)
T ss_dssp GBCSSEEEEECSCHHHHHHHHHHHHHTTEESCBCCTTT----CSEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred hccceEEEEECCCcccHHHHHHHHHHCCCEEecCCCcC----CeEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 1234566777642233344455567799999885321 24999964 48999999999999864
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=1.3e-13 Score=131.63 Aligned_cols=346 Identities=10% Similarity=-0.018 Sum_probs=208.8
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCC-----cEEEcCChH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEG-----DIFVSDGAK 136 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~-----~i~~~~G~~ 136 (433)
+.+-.+|.+....+ .++.+.+.+.+.+.. ....+...+...++.+.+.+|+.+.++.+.. .=.+|+|++
T Consensus 52 g~~~~n~asf~~t~-~~~~~~~l~~~~~~~-----N~~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgS 125 (450)
T d1pmma_ 52 GNARQNLATFCQTW-DDENVHKLMDLSINK-----NWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSS 125 (450)
T ss_dssp CCGGGBCSCCSCCC-CCHHHHHHHHHTTTC-----BTTCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHH
T ss_pred CCccccccccccCC-CCHHHHHHHHHHHhc-----CCCCcccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchH
Confidence 44445666655443 456666777766542 2233333345678999999999886665421 137888888
Q ss_pred HHHHH-HHHh----c-------CCC-CEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-
Q 045431 137 CDISR-LQIV----F-------GSN-VTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST- 202 (433)
Q Consensus 137 ~al~~-l~~l----~-------~~g-d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 202 (433)
+++.+ +.+. . .++ ..+++....|.+...+++.+| +++..++.++++ ...+.+.
T Consensus 126 eA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s~~Kaa~~~g------------i~~~~v~~~~~~-~~~d~~~L 192 (450)
T d1pmma_ 126 EACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWD------------VELREIPMRPGQ-LFMDPKRM 192 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCHHHHHHHHHTT------------CEEEECCCBTTB-CSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHHHHHHHHHHcC------------CCceEeeecCCC-CcCcHHHH
Confidence 88764 3221 0 122 346777788999999999999 478888887542 3333322
Q ss_pred ----CCCccEEEEcCCCCccccCCCHHHHHHHHH---HHHHcCCEEEEecccccccc--CCC-CCcccccCCCCcceEEE
Q 045431 203 ----VARTDIIFFCSPNNPTGAAATREQLTRLVQ---FAKDNGSIIVYDSAYALYIS--DDN-PRSIFEIPGAKEVAIET 272 (433)
Q Consensus 203 ----~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~---~a~~~~~~li~De~~~~~~~--~~~-~~~~~~~~~~~~~vi~i 272 (433)
.+++.+|+.+.++|.||.+-+.+++.+|++ .|+++|+++.+|.+|+.+.. ... ......+ .....+.
T Consensus 193 ~~~i~~~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~~~~---~~aDSi~ 269 (450)
T d1pmma_ 193 IEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRL---PRVKSIS 269 (450)
T ss_dssp HHHCCTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTS---TTEEEEE
T ss_pred HHHhhhCceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhhhhcc---cceeEee
Confidence 357788888899999999999887766655 46789999999999986432 211 1111222 2334667
Q ss_pred ecccccccccccceeeeeccccccccCCcchhHHH-H-HHHhhccCC-CcHHHHHHHHHhcCcCChhHHHHHHHHHHHHH
Q 045431 273 SSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDF-N-RIVCTCFNG-ASNISQAGGLACLSPEGFKAVHEVIGFYKENT 349 (433)
Q Consensus 273 ~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 349 (433)
.|.+|+++ ....+||++.++.........+...+ . ........+ .+.....+....+...+.+.+++..++..+..
T Consensus 270 ~s~HK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~G~~G~~~~~~~~~~la 348 (450)
T d1pmma_ 270 ASGHKFGL-APLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVA 348 (450)
T ss_dssp EETTTTTC-CCSSCEEEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhhccC-CCCCeeEEEecChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 78999875 56669999987665311100000000 0 000001111 11122222233333334456788888999999
Q ss_pred HHHHHHHhhc-CCeeecC----CCccEEEEECC-----CCChHHHHHHHHHcCCeEecCCCCCC--CCCCCeEEEeec--
Q 045431 350 DIIVETFNSL-GFKVYGG----KNAPYVWVQFP-----GRSSWDVFSEILEKTHVVTTPGSGFG--PGGEGFIRVSAF-- 415 (433)
Q Consensus 350 ~~l~~~l~~~-g~~~~~~----~~g~~~~~~~~-----~~~~~~~~~~l~~~~gi~v~~g~~f~--~~~~~~iRi~~~-- 415 (433)
+++.+.|++. ++++..+ .+...+.+++. +.+..++...| .++|..+. ...+. ......+|+.+.
T Consensus 349 ~~l~~~L~~~~~~el~~~~~p~~~l~~V~Fr~~~~~~~~~~~~~l~~~L-~~~Gw~v~-~~~~p~~~~~~~~lRvvv~~~ 426 (450)
T d1pmma_ 349 AYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERL-RLRGWQVP-AFTLGGEATDIVVMRIMCRRG 426 (450)
T ss_dssp HHHHHHHHTTSCEEEEEECCTTTBSSEEEEEECTTCCCSSCHHHHHHHH-HTTTCBCC-EEECCTTCTTCEEEEEECCTT
T ss_pred HHHHHHHHhCCCeEEEeCCCCCCceEEEEEecCCcccCCCCHHHHHHHH-HHcCCeee-ccCcCCCcCCcEEEEEEccCC
Confidence 9999999998 5776532 22345666664 23444555555 55587663 22111 122457999874
Q ss_pred cChhHHHHHHHHHHHhh
Q 045431 416 GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 416 ~~~~~l~~~l~~l~~~l 432 (433)
.+.++++++++.|++++
T Consensus 427 ~t~e~~d~lv~dl~~~v 443 (450)
T d1pmma_ 427 FEMDFAELLLEDYKASL 443 (450)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 37888999999988875
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.56 E-value=8.3e-14 Score=126.64 Aligned_cols=207 Identities=16% Similarity=0.150 Sum_probs=138.1
Q ss_pred HHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHH----HhCCcccccccccccc
Q 045431 109 PLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSV----IMGQTGEFQKDAEKYG 183 (433)
Q Consensus 109 ~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~----~~g~~~~~~~~~~~~~ 183 (433)
.|.+.+|+.- + .+..++++++++|+.. +..++++||+|++..+.|.+....++ ..| .
T Consensus 2 aLE~~la~Le----g--~~~a~~~sSGMaAi~~~l~~ll~~Gd~iv~~~~~Yg~t~~~~~~~l~~~g------------i 63 (331)
T d1pffa_ 2 ALEGKIAKLE----H--AEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFG------------V 63 (331)
T ss_dssp HHHHHHHHHH----T--CSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTT------------C
T ss_pred HHHHHHHHHh----C--CCeEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHhcC------------e
Confidence 4677888774 3 4567888999999976 78999999999999999988655543 444 3
Q ss_pred eEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHH-HHcCCEEEEeccccccccCCCCCccccc
Q 045431 184 KIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFA-KDNGSIIVYDSAYALYISDDNPRSIFEI 262 (433)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a-~~~~~~li~De~~~~~~~~~~~~~~~~~ 262 (433)
++.+++..+...+...+ .+++++|++.+|.||+..+.+ ++++++++ +++|+++|+|+.++..... .++ .+
T Consensus 64 ~~~~~d~~d~~~~~~~i--~~~t~~i~~Es~~np~~~v~d---~~~~~~~~a~~~~~~~vVDnT~atp~~~---~pl-~~ 134 (331)
T d1pffa_ 64 EVDFIDMAVPGNIEKHL--KPNTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILT---NPL-DL 134 (331)
T ss_dssp EEEEECTTSTTHHHHTC--CTTEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHC---CGG-GG
T ss_pred EEEEecccchhhHhhhc--ccccceeeeeccccccccccc---chhhhhhhhcccCceEEeeccccccccc---ccc-cc
Confidence 67777665433332222 368999999999999999998 55566654 5689999999999842221 112 12
Q ss_pred CCCCcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHH--HHhhccCCCcHHHHHHHHHhcCcCChhHHH
Q 045431 263 PGAKEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNR--IVCTCFNGASNISQAGGLACLSPEGFKAVH 339 (433)
Q Consensus 263 ~~~~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~ 339 (433)
+-.|++.|.+|.++-.| .=.|.++++++.+ ..... .........++.....+. .+.+.+.
T Consensus 135 ----GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~--------~~~~~~~~~~~~G~~l~p~~a~ll~-----rgl~Tl~ 197 (331)
T d1pffa_ 135 ----GVDIVVHSATKYINGHTDVVAGLVCSRADII--------AKVKSQGIKDITGAIISPHDAWLIT-----RGTLTLD 197 (331)
T ss_dssp ----TCSEEEEETTTTTSSSSSCCCEEEEECHHHH--------HHHHHTCCCCCCCCCCCHHHHHHHH-----HHHHHHH
T ss_pred ----CCCEEEecchhhcCCCCccccccccccccch--------hhhhhhhhhhccCCCCCHHHHHHHH-----HHHHHHH
Confidence 11389999999986323 3346677765553 12111 111122334444433333 3445667
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 045431 340 EVIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 340 ~~~~~~~~~~~~l~~~l~~~ 359 (433)
.+.++..++...+.+.|+++
T Consensus 198 ~Rm~~~~~nA~~lA~~L~~h 217 (331)
T d1pffa_ 198 MRVKRAAENAQKVAEFLHEH 217 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhhhhC
Confidence 77888889999999999987
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=4.2e-13 Score=124.80 Aligned_cols=330 Identities=10% Similarity=-0.006 Sum_probs=178.8
Q ss_pred eEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCC--CCCC-C----CCCHHHHHHHHHHHhccCCCCC-CcEEEcCChH
Q 045431 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYS--GYGA-E----QGEKPLRAAIASTFYKDLGIEE-GDIFVSDGAK 136 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~Y~~-~----~g~~~lr~~la~~l~~~~~~~~-~~i~~~~G~~ 136 (433)
+++|+-|. ...|++|++++.+.+.++.+ .+.. ..++ . .-..+.|+.|++++ +++. +.|++++|++
T Consensus 2 ~~nF~pGP--~~~p~~Vl~a~~~~~~~~~~-~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~----~~~~~~~v~~~~gs~ 74 (360)
T d1bjna_ 2 IFNFSSGP--AMLPAEVLKQAQQELRDWNG-LGTSVMEVSHRGKEFIQVAEEAEKDFRDLL----NVPSNYKVLFCHGGG 74 (360)
T ss_dssp CEECCSSS--CCCCHHHHHHHHHTSSSGGG-SSSCGGGSCTTSHHHHHHHHHHHHHHHHHH----TCCTTEEEEEESSHH
T ss_pred eEEeCCCC--cCCCHHHHHHHHHHHhhhcc-cCccccccCcCCHHHHHHHHHHHHHHHHHh----CCCCCCEEEEECCch
Confidence 56776663 46899999999998765432 1111 1111 1 12456666666666 7754 4788888888
Q ss_pred HHHHH--HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-C--CCCCCccEEEE
Q 045431 137 CDISR--LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-L--STVARTDIIFF 211 (433)
Q Consensus 137 ~al~~--l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~i~l 211 (433)
.+... +..+..+++.+++..-.+.... ........+. ..+......+...... . ....+++++++
T Consensus 75 t~~~~a~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 144 (360)
T d1bjna_ 75 RGQFAAVPLNILGDKTTADYVDAGYWAAS-AIKEAKKYCT---------PNVFDAKVTVDGLRAVKPMREWQLSDNAAYM 144 (360)
T ss_dssp HHHHHHHHHHHCTTCCEEEEEESSHHHHH-HHHHHTTTSE---------EEEEECEEEETTEEEECCGGGCCCCSSCSCE
T ss_pred HHHHhhhhhcccccccccceecccchhhh-hHHHHhhcCc---------cceeeccccCCCcchhhhhhhhccCCceeEE
Confidence 77654 3566788888888766654432 2223332221 2333333222222111 1 12356777777
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeec
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVI 291 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~ 291 (433)
++.||-||+..+.. .+. ++.+++++++|.+.+.... +..... ..+++.|.+|.+++|+ ..|+++.
T Consensus 145 ~~~~~~t~~~~~~~---~i~--~~~~~~~v~vDa~~~~~~~---~vd~~~------~dv~~~ss~k~~~~~~-~~~~~~~ 209 (360)
T d1bjna_ 145 HYCPNETIDGIAID---ETP--DFGADVVVAADFSSTILSR---PIDVSR------YGVIYAGAQKNIGPAG-LTIVIVR 209 (360)
T ss_dssp EECSEETTTTEECC---CCC--CCCTTCCEEEECTTTTTSS---CCCGGG------CSEEEEETTTTTSSTT-CEEEEEE
T ss_pred EecccccccCcccc---cee--cccccceeeeeeeccccce---eeeecc------ceeEEEEcccccccCC-CceeEee
Confidence 77888898877643 332 4567899999988773211 222222 2377888899987444 4555555
Q ss_pred cccccccCC-cch---hHHHHHHHhhccCCCcHHHHHHHHHhc-CcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecC
Q 045431 292 PKELLFSDG-FPV---AKDFNRIVCTCFNGASNISQAGGLACL-SPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGG 366 (433)
Q Consensus 292 ~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~q~~~~~~l-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ 366 (433)
.+....... ... ........... ..+.......+.... ........+...++.++....+.+.+...+.....+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (360)
T d1bjna_ 210 EDLLGKANIACPSILDYSILNDNGSMF-NTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDV 288 (360)
T ss_dssp GGGCSCCCTTSCGGGCHHHHHHTTTCS-SCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCB
T ss_pred ehhhhhccccCCcchhhHHHHhhhhhc-cccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhccccccccC
Confidence 544432111 000 01111111111 122222222222221 111112345555566666666666666654333221
Q ss_pred ----CCccEEEEECCC-CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 367 ----KNAPYVWVQFPG-RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 367 ----~~g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
.....+.+.++. ....++.. +++++||.+..|... -+.||+|+ +.++||++.+++.|+++.
T Consensus 289 ~~~~rs~~v~~f~~~~~~~~~~~~~-~l~~~Gi~~~~G~~~----~g~~Ris~~~~~t~edV~~li~~l~e~~ 356 (360)
T d1bjna_ 289 AKRNRSRMNVPFQLADSALDKLFLE-ESFAAGLHALKGHRV----VGGMRASIYNAMPLEGVKALTDFMVEFE 356 (360)
T ss_dssp CGGGBCSSEEEEEESSGGGHHHHHH-HHHHTTEECCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CcccccceEEEEEcCCcccHHHHHH-HHHHCCCEeecCCCc----cCeEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 122346677774 34445554 456679999887422 13499996 458999999999999864
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.52 E-value=1.2e-12 Score=121.33 Aligned_cols=213 Identities=13% Similarity=0.085 Sum_probs=138.7
Q ss_pred CHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHHHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEE
Q 045431 107 EKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIE 186 (433)
Q Consensus 107 ~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 186 (433)
...|.+.|++.- + .+..++++++++|+.++..++.+||+|++....|.+....+...-.+.. ..+.
T Consensus 57 ~~~lE~~la~LE----~--~~~a~~~sSGmaAi~~~l~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~g--------i~~~ 122 (393)
T d1n8pa_ 57 RENLERAVAALE----N--AQYGLAFSSGSATTATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHG--------VETS 122 (393)
T ss_dssp HHHHHHHHHHHT----T--CSEEEEESCHHHHHHHHHHTSCSSCEEEEESSCCHHHHHHHHHTSTTTC--------SCCE
T ss_pred HHHHHHHHHHHh----C--CceEEEecCchhHHHhhhhcccCCCeeeeeeeecccchhhhhhhhhccc--------ceeE
Confidence 344555555542 2 3455666666888887778899999999999999998777765543311 2444
Q ss_pred EeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHH----HcCCEEEEeccccccccCCCCCccccc
Q 045431 187 YMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAK----DNGSIIVYDSAYALYISDDNPRSIFEI 262 (433)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~----~~~~~li~De~~~~~~~~~~~~~~~~~ 262 (433)
++..+.+ ++.. ...+++++|++-+|.||+..+.+ +++|+++|+ ++|+++|+|+.++.-... .|+ .+
T Consensus 123 ~~~~~~~-~~~~--~i~~~t~lv~~EspsNP~l~v~D---i~~ia~~a~~~~~~~g~~lvVDnT~atP~~~---~Pl-~~ 192 (393)
T d1n8pa_ 123 FTNDLLN-DLPQ--LIKENTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYIS---NPL-NF 192 (393)
T ss_dssp EESSHHH-HHHH--HSCSSEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHHC---CGG-GG
T ss_pred EeecchH-HHHH--HhhhhcceeEecCcchhhhhccc---hhhhhhhhhhhcccCCceEEEecCccCcccC---Cch-hh
Confidence 4442221 1111 12478999998899999999999 677777777 678999999999742111 122 22
Q ss_pred CCCCcceEEEeccccccccc-ccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHH
Q 045431 263 PGAKEVAIETSSFSKYAGFT-GVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEV 341 (433)
Q Consensus 263 ~~~~~~vi~i~S~sK~~~~~-G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~ 341 (433)
+ -.|++.|.+|.++-. ..=.|.++.++..+ .+.+...+.......++.....+.+-++ .+..+
T Consensus 193 -G---ADiVvhS~TKyi~GhsDv~~G~v~~~~~~~-------~~~l~~~~~~~G~~~~p~~a~ll~rgl~-----Tl~lR 256 (393)
T d1n8pa_ 193 -G---ADIVVHSATKYINGHSDVVLGVLATNNKPL-------YERLQFLQNAIGAIPSPFDAWLTHRGLK-----TLHLR 256 (393)
T ss_dssp -T---CSEEEEETTTTTTCSSCCCCEEEEESCHHH-------HHHHHHHHHHHCCCCCHHHHHHHHHHHT-----THHHH
T ss_pred -C---CCEEEEccccccCCCCccccceeeecchhH-------HHHHHHHHhhcCCCCChHHHHHHHhCCc-----chhhH
Confidence 1 238999999988622 24457666555433 3555555554455566665554444444 35667
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 045431 342 IGFYKENTDIIVETFNSL 359 (433)
Q Consensus 342 ~~~~~~~~~~l~~~l~~~ 359 (433)
.++..++...+.+.|+.+
T Consensus 257 ~~~~~~nA~~lA~~L~~~ 274 (393)
T d1n8pa_ 257 VRQAALSANKIAEFLAAD 274 (393)
T ss_dssp HHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 777888888999999764
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.49 E-value=2.7e-12 Score=119.04 Aligned_cols=212 Identities=15% Similarity=0.136 Sum_probs=136.9
Q ss_pred CHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHh-CCcccccccccccce
Q 045431 107 EKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIM-GQTGEFQKDAEKYGK 184 (433)
Q Consensus 107 ~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~ 184 (433)
...|.+.|++.- + .+..++++++++|+.. +.+++++||+|++.+..|.+....+... ...+ ..
T Consensus 61 ~~~le~~la~LE----g--~~~a~~~sSGmaAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g---------i~ 125 (394)
T d1e5ea_ 61 VSNLEGKIAFLE----K--TEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFG---------IQ 125 (394)
T ss_dssp HHHHHHHHHHHH----T--CSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTT---------CE
T ss_pred HHHHHHHHHHHh----C--CcceeeeccchHHHHHHHHhhcccccccccccceeehhhHhHHHHhhccc---------ee
Confidence 345666666643 2 3567788888899886 7899999999999999998765554422 1112 36
Q ss_pred EEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHH-HcCCEEEEeccccccccCCCCCcccccC
Q 045431 185 IEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAK-DNGSIIVYDSAYALYISDDNPRSIFEIP 263 (433)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~-~~~~~li~De~~~~~~~~~~~~~~~~~~ 263 (433)
+.++...+...+...+ .+++++|++-+|.|||..+.+ ++++++.++ ++|+++|+|+.++.-... .|+ .+
T Consensus 126 ~~~~d~~d~~~~~~~i--~~~t~lv~~Etp~NP~l~v~D---i~~~~~~~~~~~g~~vvvDnT~atP~~~---~Pl-~~- 195 (394)
T d1e5ea_ 126 VDFINTAIPGEVKKHM--KPNTKIVYFETPANPTLKIID---MERVCKDAHSQEGVLVIADNTFCSPMIT---NPV-DF- 195 (394)
T ss_dssp EEEECTTSTTHHHHHC--CTTEEEEEEESSCTTTCCCCC---HHHHHHHHHTSTTCEEEEECTTTCTTTC---CGG-GG-
T ss_pred eeccCCCCHHHHHHhh--cccccEEEEeccCCcceeeeh---hhhhhhccccccCeEEEecCcccCcccC---Cch-hc-
Confidence 6666654332222222 368999999999999999988 666776565 468999999998742211 112 22
Q ss_pred CCCcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHH--HHhhccCCCcHHHHHHHHHhcCcCChhHHHH
Q 045431 264 GAKEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNR--IVCTCFNGASNISQAGGLACLSPEGFKAVHE 340 (433)
Q Consensus 264 ~~~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~ 340 (433)
+-.|++.|.+|.++-.+ .=.|.++++++.+ ...+. ++.......++.....+..-+ +.+.-
T Consensus 196 ---GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~--------~~~~~~~~~~~~G~~lsp~~a~ll~rgl-----~TL~l 259 (394)
T d1e5ea_ 196 ---GVDVVVHSATKYINGHTDVVAGLICGKADLL--------QQIRMVGIKDITGSVISPHDAWLITRGL-----STLNI 259 (394)
T ss_dssp ---TCSEEEEETTTTTTCSSCCCCEEEEECHHHH--------HHHHHTCCCCCCCCCCCHHHHHHHHHHH-----TTHHH
T ss_pred ---CCCEEEechhhhcCCCcccccccccchhhHH--------HHHHHHHHHHhhCCCCChHHHHHHHhhc-----hhHHH
Confidence 12399999999886222 3356677766653 22221 111223334555544444333 44577
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 045431 341 VIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 341 ~~~~~~~~~~~l~~~l~~~ 359 (433)
+.++..++...+.+.|+++
T Consensus 260 Rm~r~~~nA~~lA~~L~~h 278 (394)
T d1e5ea_ 260 RMKAESENAMKVAEYLKSH 278 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 7788889999999999987
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=7.4e-13 Score=127.76 Aligned_cols=332 Identities=13% Similarity=0.108 Sum_probs=179.8
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-H
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-L 142 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l 142 (433)
.+||+-+.....+.....+. .+. .+...|+.++...+|++.+++++ |. +.+++++++++|..+ +
T Consensus 42 ~~idl~sd~~t~~~~~~~~a----~~~-----~gd~~Y~~~~~~~~le~~~a~l~----G~--~~~~~~~sGt~A~~~a~ 106 (467)
T d2v1pa1 42 VFIDLLTDSGTGAVTQSMQA----AMM-----RGDEAFSGSRSYYALAESVKNIF----GY--QYTIPTHQGRGAEQIYI 106 (467)
T ss_dssp CSEECSCCTTCSCCCHHHHH----HTT-----SCCCCSSSCHHHHHHHHHHHHHT----CC--SEEEEECSSTTTHHHHH
T ss_pred eeeeccccccchhhHHHHHh----hcc-----ccchhhcCCchHHHHHHHHHHHH----CC--CEEEECCCCHHHHHHHH
Confidence 46777655443333443333 222 23346877888899999999987 54 456666666666554 6
Q ss_pred HHhcCCCCE---------EEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCc--------ccCCCC---
Q 045431 143 QIVFGSNVT---------MAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGF--------FPDLST--- 202 (433)
Q Consensus 143 ~~l~~~gd~---------Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~--- 202 (433)
..++++||. +......|..........|. .+..++.+..... ..+++.
T Consensus 107 ~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~G~------------~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 174 (467)
T d2v1pa1 107 PVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGC------------TVRNVYIKEAFDTGVRYDFKGNFDLEGLER 174 (467)
T ss_dssp HHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTC------------EEEECBCTTTTCTTSCCTTTTCBCHHHHHH
T ss_pred HHHhhccceEecCCCCcEEEEecccccccHHHHHHcCC------------eeeecccccccccccccccccCCCHHHHHH
Confidence 666655544 44444444444555566663 5555554322110 111111
Q ss_pred ------CCCccEEEEcCCCCcc-ccCCCHHHHHHHHHHHHHcCCEEEEeccccccc-cC------C-CCCcccccC--CC
Q 045431 203 ------VARTDIIFFCSPNNPT-GAAATREQLTRLVQFAKDNGSIIVYDSAYALYI-SD------D-NPRSIFEIP--GA 265 (433)
Q Consensus 203 ------~~~~~~i~l~~p~nPt-G~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~-~~------~-~~~~~~~~~--~~ 265 (433)
...+.++++.+.+|.. |.+++.+++++|.++|++||+++|+|+++.... .. + ...++..+. -.
T Consensus 175 ~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 254 (467)
T d2v1pa1 175 GIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETY 254 (467)
T ss_dssp HHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHG
T ss_pred HHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEEEEechhhhccccccccccccccCCcccccchhhc
Confidence 1345666666666654 688899999999999999999999999975311 00 0 011111100 00
Q ss_pred CcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHh----h-ccCCCcHHHHHHHHHhcCcCChhHHHH
Q 045431 266 KEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVC----T-CFNGASNISQAGGLACLSPEGFKAVHE 340 (433)
Q Consensus 266 ~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~q~~~~~~l~~~~~~~~~~ 340 (433)
....++..|.+|.++ +..-|+++.+++.+... ......... . ...+.......+....+..... .+
T Consensus 255 ~~~d~~s~s~~K~~~--~~~gg~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~ 325 (467)
T d2v1pa1 255 KYADMLAMSAKKDAM--VPMGGLLCMKDDSFFDV----YTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMN---LD 325 (467)
T ss_dssp GGCSEEEEESSSTTC--CSSCEEEEECSGGGHHH----HHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTC---HH
T ss_pred ccCCEEEecCCCCCC--CCCceeEEecchhhhhH----HHhhcccccccccCcchhhhHHHHHHHHHHHhHHhhh---HH
Confidence 112256667888775 33457777766654110 011111111 1 1112223333333332321111 33
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEE----CCC-----CChHHHHHHHHHcCCeEecCCCCC---------
Q 045431 341 VIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQ----FPG-----RSSWDVFSEILEKTHVVTTPGSGF--------- 402 (433)
Q Consensus 341 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~----~~~-----~~~~~~~~~l~~~~gi~v~~g~~f--------- 402 (433)
..++..++.+++.+.|.+.++.+.++ .+....++ ++. .........++.+.||.......+
T Consensus 326 ~~~~~~~~~~~l~~~L~~~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~ 404 (467)
T d2v1pa1 326 WLAYRIAQVQYLVDGLEEIGVVCQQA-GGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTG 404 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEEE-CSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTC
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccCC-CccceeecchhhcCCcchhhhhhHHHHHHHHHHcCCeeecccccccccccccC
Confidence 44455677888999999887766543 33222222 121 123445666667778865321110
Q ss_pred --CCCCCCeEEEeec---cChhHHHHHHHHHHHhh
Q 045431 403 --GPGGEGFIRVSAF---GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 403 --~~~~~~~iRi~~~---~~~~~l~~~l~~l~~~l 432 (433)
.+.....+||++. .++++|+..+++|++++
T Consensus 405 ~~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~v~ 439 (467)
T d2v1pa1 405 KQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVK 439 (467)
T ss_dssp SBCCCSCCEEEECCCTTTCCHHHHHHHHHHHHHHH
T ss_pred CccCCCcceEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 1233568999863 38899999999998875
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.46 E-value=7.6e-12 Score=116.96 Aligned_cols=176 Identities=13% Similarity=0.150 Sum_probs=120.1
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHh-cCCCCEEEEeCCCCh
Q 045431 83 SALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIV-FGSNVTMAVQDPSYP 160 (433)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l-~~~gd~Vl~~~p~~~ 160 (433)
+++.+.+.. ..+++.|+ -...|.+.+++++ +. ...+.++++|.|+.+ +.++ +++||+|+++.-+|.
T Consensus 5 ~~~~~~l~~----~~~~~~G~--~~~~fE~~~~~~~----~~--~~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~ 72 (374)
T d1o69a_ 5 KYIEEVFKS----NYIAPLGE--FVNRFEQSVKDYS----KS--ENALALNSATAALHLALRVAGVKQDDIVLASSFTFI 72 (374)
T ss_dssp HHHHHHHHH----TTTSCTTH--HHHHHHHHHHHHH----CC--SEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCG
T ss_pred HHHHHHHhc----CCcCCCCH--HHHHHHHHHHHHH----Cc--CeEEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcchH
Confidence 456666653 33434443 4689999999997 54 368888888888886 5665 789999999999999
Q ss_pred hhhhhHHHhCCcccccccccccceEEEeecCccCCc-ccCC-----CCCCCccEEEEcCCCCccccCCCHHHHHHHHHHH
Q 045431 161 AYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGF-FPDL-----STVARTDIIFFCSPNNPTGAAATREQLTRLVQFA 234 (433)
Q Consensus 161 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a 234 (433)
....++..+| +.++++.++++... ..+. ....++++|+++ +..|...+ +.+|.++|
T Consensus 73 a~~~~~~~~g------------~~pv~~Di~~~~~~~~~~~~~~~~~~~~~~~aii~~---~~~G~~~d---~~~i~~~~ 134 (374)
T d1o69a_ 73 ASVAPICYLK------------AKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILT---HLYGNAAK---MDEIVEIC 134 (374)
T ss_dssp GGTHHHHHTT------------CEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEE---CGGGCCCC---HHHHHHHH
T ss_pred hhHHHHhhcc------------ceeEecccccccccccccccccchhccccccccccc---ccccchhh---hHHHHHHh
Confidence 9999999999 47888887643221 1111 124678888864 44677666 78888899
Q ss_pred HHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecc--cccccccccceeeeecccccc
Q 045431 235 KDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSF--SKYAGFTGVRLGWTVIPKELL 296 (433)
Q Consensus 235 ~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~--sK~~~~~G~r~G~l~~~~~~~ 296 (433)
+++|++||+|.+++....-. ...+.++ .+ +.+.|| +|.++..| -|.+++.++-+
T Consensus 135 ~~~~i~vIED~a~a~g~~~~-~~~~G~~---gd--~~~fSf~~~K~l~tge--GG~i~tnn~~~ 190 (374)
T d1o69a_ 135 KENDIVLIEDAAEALGSFYK-NKALGTF---GE--FGVYSYNGNKIITTSG--GGMLIGKNKEK 190 (374)
T ss_dssp HHTTCEEEEECTTCTTCEET-TEETTSS---SS--EEEEECCTTSSSCCSS--CEEEEESCHHH
T ss_pred hccCcchhhhhhhhhcceEC-CeecCCC---Cc--eEEEeccCcccccccc--ceeehhhhHHH
Confidence 99999999999999532211 1122222 23 556666 58886444 47777765553
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.46 E-value=1.4e-12 Score=125.10 Aligned_cols=327 Identities=12% Similarity=0.029 Sum_probs=197.1
Q ss_pred ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCC---------CcEEEcCChHHHHH-HHHH--
Q 045431 77 IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEE---------GDIFVSDGAKCDIS-RLQI-- 144 (433)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~---------~~i~~~~G~~~al~-~l~~-- 144 (433)
.++.++..+...+.+ .....|...+...++...+.+|+.+.++.+. ..-++|+|++.+.. .+..
T Consensus 85 ~~~~~l~~~~~~~~n----~n~~~~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR 160 (476)
T d1js3a_ 85 SYPAMLADMLCGAIG----CIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAAR 160 (476)
T ss_dssp CHHHHHHHHHHHHHC----CCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhc----ccccchhhhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHH
Confidence 445555444444432 2334455566778999999999998555532 23467787776654 3311
Q ss_pred --hc------CCC---------CEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC----
Q 045431 145 --VF------GSN---------VTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST---- 202 (433)
Q Consensus 145 --l~------~~g---------d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---- 202 (433)
.+ .+| -.|++.+-+|.++..++..+| ..+..++++.++..+.+ +++
T Consensus 161 ~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~Si~ka~~~lG------------l~~~~v~~d~~~~md~~~L~~~i~~ 228 (476)
T d1js3a_ 161 TKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGG------------VKLKAIPSDGKFAMRASALQEALER 228 (476)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHT------------CEEEEECCCTTSCCCHHHHHHHHHH
T ss_pred HHHHHhhcccccCcccccccCceEEEecccccHHHHHHHHhcC------------ceEEEeccCCCCCcCHHHHHHHHHH
Confidence 11 111 257788999999999999999 47788888765444333 111
Q ss_pred ----CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccC-CCCCc-ccccCCCCcceEEEeccc
Q 045431 203 ----VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISD-DNPRS-IFEIPGAKEVAIETSSFS 276 (433)
Q Consensus 203 ----~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~-~~~~~-~~~~~~~~~~vi~i~S~s 276 (433)
...+-+|+.+..++.||.+=+ +++|.++|++|++++.+|.+|+.+... ..... +..+... .-+.-+++
T Consensus 229 ~~~~g~~p~~VvataGtt~~G~iDp---l~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~a---DSit~d~H 302 (476)
T d1js3a_ 229 DKAAGLIPFFVVATLGTTSCCSFDN---LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFA---DSFNFNPH 302 (476)
T ss_dssp HHHTTCEEEEEEEEBSCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGC---SEEEECHH
T ss_pred HHhcCCCcEEEeecCCCccceeecc---HHHHHHHHHhcCcEEEEecccchhhhhhcchhhhhcCCccc---ceeeecCc
Confidence 122445666688999999877 888999999999999999999875432 22221 2222211 24455889
Q ss_pred ccccccccceeeeeccccccccCCcchhHHHHH-HHh----------h---ccCCCcHHHHHHHHHhcCcCChhHHHHHH
Q 045431 277 KYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNR-IVC----------T---CFNGASNISQAGGLACLSPEGFKAVHEVI 342 (433)
Q Consensus 277 K~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~-~~~----------~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~ 342 (433)
|+++ .....|+++.++.............+.. ... . .......+.. ...++..+.+.++++.
T Consensus 303 K~l~-~P~~~g~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~al~l---w~~l~~~G~~g~~~~i 378 (476)
T d1js3a_ 303 KWLL-VNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKM---WFVFRMYGVKGLQAYI 378 (476)
T ss_dssp HHSS-CCSSCEEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHH---HHHHHHHHHHHHHHHH
T ss_pred cccc-cCCcceeecccchHHHHHHHhcChhhhccccccccccccccccccccchhhHHHHH---HHHHHHHhHhHHHHHH
Confidence 9987 5556788777754321000000000000 000 0 0011112222 2223323445678888
Q ss_pred HHHHHHHHHHHHHHhhc-CCeeecCCCccEEEEECCCCC--hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec---c
Q 045431 343 GFYKENTDIIVETFNSL-GFKVYGGKNAPYVWVQFPGRS--SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF---G 416 (433)
Q Consensus 343 ~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~~~~~~~~--~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~---~ 416 (433)
++..+.++++.+.+++. ++++..+.....+.+++.+.+ ...+.+++.+...+.+.+.. ..+..++|+++. +
T Consensus 379 ~~~~~lA~~l~~~l~~~~~fel~~~p~l~iV~Fr~~~~d~~n~~l~~~l~~~G~~~~s~t~---~~g~~~lR~~i~n~~T 455 (476)
T d1js3a_ 379 RKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDGLNEALLERINSARKIHLVPCR---LRGQFVLRFAICSRKV 455 (476)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEECSCCCSSEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEE---ETTEEEEEEECCCTTC
T ss_pred HHHHHHHHHHHHHHhcCCCeEEECCCceEEEEEEccCChHHHHHHHHHHHhcCCEEEeeee---ECCEEEEEEEeCCCCC
Confidence 88889999999999988 898887767777778876433 23566666555334443321 223458999964 3
Q ss_pred ChhHHHHHHHHHHHhh
Q 045431 417 HRGNVLEACKRFKHLY 432 (433)
Q Consensus 417 ~~~~l~~~l~~l~~~l 432 (433)
++++++.+++.|+++.
T Consensus 456 t~~did~~~~~i~~~a 471 (476)
T d1js3a_ 456 ESGHVRLAWEHIRGLA 471 (476)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 6889999999998864
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.44 E-value=3.7e-12 Score=118.43 Aligned_cols=330 Identities=13% Similarity=0.061 Sum_probs=170.1
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCC-CCCCCCC-----CCCCHHHHHHHHHHHhccCCCCCC-cEEEcCChH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQE-GYSGYGA-----EQGEKPLRAAIASTFYKDLGIEEG-DIFVSDGAK 136 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~Y~~-----~~g~~~lr~~la~~l~~~~~~~~~-~i~~~~G~~ 136 (433)
.+.+|+.|. .+.|++|.+++.+.+.++.... +....++ ..-..+.|+.|++++ +++.+ .|++++|++
T Consensus 3 ~~~nF~pGP--~~~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~----~~~~~~~i~~~~gt~ 76 (360)
T d1w23a_ 3 QVFNFNAGP--SALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELL----QIPNDYQILFLQGGA 76 (360)
T ss_dssp CCEECCSSS--CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHH----TCCTTEEEEEESSHH
T ss_pred ceeEeCCCC--cCCCHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHh----CCCCCCEEEEeCCcH
Confidence 356787774 4678999999999775432100 0101111 112345666666666 77655 678888888
Q ss_pred HHHHH--HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCC-cccCCCC-CCCccEEEEc
Q 045431 137 CDISR--LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENG-FFPDLST-VARTDIIFFC 212 (433)
Q Consensus 137 ~al~~--l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~i~l~ 212 (433)
++... ...+..+++.|++....+.+... ...+...+ ...+......... ...+++. .......
T Consensus 77 ~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~-~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 143 (360)
T d1w23a_ 77 SLQFTMLPMNLLTKGTIGNYVLTGSWSEKA-LKEAKLLG---------ETHIAASTKANSYQSIPDFSEFQLNENDA--- 143 (360)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEECSHHHHHH-HHHHHTTS---------EEEEEEECGGGTSCSCCCGGGCCCCTTEE---
T ss_pred HHHHHHHHhhhcccCcccceeeccchhhhh-HHHHHHhh---------hcceeeccccccccchhhhhhcccccccc---
Confidence 77664 35566788888887766554332 22222211 1233333222111 1122221 2223333
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecc
Q 045431 213 SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIP 292 (433)
Q Consensus 213 ~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~ 292 (433)
+.+|.||...+ +.+|.++|+++|+++|+|.+.+.... +..+..+ + +.+.|++|.++++| ..|+++.+
T Consensus 144 ~~~~~tg~~~~---~~~i~~~~~~~g~l~ivDavqs~g~~---~id~~~~----~--vd~~~~~~~k~~~~-~~~~~~~~ 210 (360)
T d1w23a_ 144 YLHITSNNTIY---GTQYQNFPEINHAPLIADMSSDILSR---PLKVNQF----G--MIYAGAQKNLGPSG-VTVVIVKK 210 (360)
T ss_dssp EEEEESEETTT---TEECSSCCCCCSSCEEEECTTTTTSS---CCCGGGC----S--EEEEETTTTTSCTT-CEEEEEEH
T ss_pred eeEecCCcccc---ceeeeeccccceeeEEeecccccccc---ccccccc----c--ceEEeeccccccCC-cceeeEec
Confidence 33567888887 66788889999999999999884322 3333332 2 45556777766444 34555544
Q ss_pred ccccccCCc-chhHHHHH-HH-hhccCCCcHHHHHHHHHh---cCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeec
Q 045431 293 KELLFSDGF-PVAKDFNR-IV-CTCFNGASNISQAGGLAC---LSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYG 365 (433)
Q Consensus 293 ~~~~~~~~~-~~~~~~~~-~~-~~~~~~~~~~~q~~~~~~---l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~ 365 (433)
+........ .....+.. .. ......+......+.... +..... .....++.+............. ......
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (360)
T d1w23a_ 211 DLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGG--AEAIAKQNEEKAKIIYDTIDESNGFYVGH 288 (360)
T ss_dssp HHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHHTTTTSSEES
T ss_pred hhhhcccccCCcchhhhhhhhhhhhcccccceeeechhHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHHhhcccccccC
Confidence 433211100 00011111 11 111111222222211111 111111 2333333444444444444433 222211
Q ss_pred ---C-CCccEEEEECCC-CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc--ChhHHHHHHHHHHHhh
Q 045431 366 ---G-KNAPYVWVQFPG-RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG--HRGNVLEACKRFKHLY 432 (433)
Q Consensus 366 ---~-~~g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~--~~~~l~~~l~~l~~~l 432 (433)
. .+...+.+.+++ ....++.. .+.++||.+..|..+. +.+|+|++. +.|+++.+++.|+++.
T Consensus 289 ~~~~~rS~~vvsf~i~~~~~~~~~~~-~l~~~GI~~~~G~~~~----ggiRiS~~~~~t~e~V~~Li~~~~~~~ 357 (360)
T d1w23a_ 289 AEKGSRSLMNVTFNLRNEELNQQFLA-KAKEQGFVGLNGHRSV----GGCRASIYNAVPIDACIALRELMIQFK 357 (360)
T ss_dssp SCGGGBCSSEEEEECSSHHHHHHHHH-HHHHTTEESCBCCTTT----CSEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CChhhcceeEEEEEcCCCccHHHHHH-HHHHCCCeeeeCCCcc----CcEEEEeeCCCCHHHHHHHHHHHHHHH
Confidence 1 122356777774 23344554 4566799998886432 349999755 8999999999999875
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.42 E-value=9e-11 Score=109.36 Aligned_cols=304 Identities=13% Similarity=0.038 Sum_probs=182.2
Q ss_pred hHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHH-HHh-cCCC--CEEE
Q 045431 78 PEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRL-QIV-FGSN--VTMA 153 (433)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l-~~l-~~~g--d~Vl 153 (433)
.++-.+++.+.+.. +....+ .-..++.+.+++++ |. .+++.+++++.|+.++ .++ +.+| |+|+
T Consensus 11 ~~~~~~~v~~~l~~-----~~~~~G--~~v~~fE~~~~~~~----g~--k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi 77 (371)
T d2fnua1 11 DKEDKKAVLEVLNS-----KQLTQG--KRSLLFEEALCEFL----GV--KHALVFNSATSALLTLYRNFSEFSADRNEII 77 (371)
T ss_dssp CHHHHHHHHHHHTS-----SCCSSS--HHHHHHHHHHHHHH----TC--SEEEEESCHHHHHHHHHHHSSCCCTTSCEEE
T ss_pred CHHHHHHHHHHHcC-----CCccCC--HHHHHHHHHHHHHH----Cc--CeEEEEecHHHHHHHHHHHhcccCCCCCeee
Confidence 35556778887752 222223 35788999999997 54 4678888888888874 444 3444 4899
Q ss_pred EeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEEEEcCCCCccccCCCHHHHHHH
Q 045431 154 VQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIFFCSPNNPTGAAATREQLTRL 230 (433)
Q Consensus 154 ~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~~p~nPtG~~~~~~~~~~i 230 (433)
++.-+|......+...| +.+++++++++.....+ ++. .+++++|+++ +..|...+ +.+|
T Consensus 78 ~p~~t~~a~~~ai~~~G------------~~pv~vDi~~~~~~~~~~~~~~~~~~t~avi~v---h~~G~~~~---~~~i 139 (371)
T d2fnua1 78 TTPISFVATANMLLESG------------YTPVFAGIKNDGNIDELALEKLINERTKAIVSV---DYAGKSVE---VESV 139 (371)
T ss_dssp ECSSSCTHHHHHHHHTT------------CEEEECCBCTTSSBCGGGSGGGCCTTEEEEEEE---CGGGCCCC---HHHH
T ss_pred cccccccccceeeeccC------------cccccccccccccccchhhhhhccchhhccccc---cccccccc---cccc
Confidence 99999999999999999 57888888765433221 222 4688888865 45688777 6788
Q ss_pred HHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecc--cccccccccceeeeeccccccccCCcchhHHHH
Q 045431 231 VQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSF--SKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFN 308 (433)
Q Consensus 231 ~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~--sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~ 308 (433)
.++|++++++||+|.+++....-. ......+ .+ +.+.|| +|.++..+ -|.+++++..+ .+.+.
T Consensus 140 ~~~~~~~~i~lIEDaaqa~Ga~~~-~~~~G~~---g~--~~~~Sf~~~K~l~~g~--GG~i~t~~~~~-------~~~~~ 204 (371)
T d2fnua1 140 QKLCKKHSLSFLSDSSHALGSEYQ-NKKVGGF---AL--ASVFSFHAIKPITTAE--GGAVVTNDSEL-------HEKMK 204 (371)
T ss_dssp HHHHHHHTCEEEEECTTCTTCEET-TEETTSS---SS--EEEEECCTTSSSCCSS--CEEEEESCHHH-------HHHHH
T ss_pred cccccccchhhccchhhccCceec-cccCCcc---cc--cccccccccccccccc--ceEEEeechhh-------hhhcc
Confidence 889999999999999999643221 1111122 22 445555 79886333 57777776554 23333
Q ss_pred HHHhh----------------ccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecC----C
Q 045431 309 RIVCT----------------CFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGG----K 367 (433)
Q Consensus 309 ~~~~~----------------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~----~ 367 (433)
..... .....+.+..+.+..-|+ .+++..++-+++.+.+.+.|.+. ++....+ .
T Consensus 205 ~~~~~g~~~~~~~~~~~~~~G~n~r~sel~Aaigl~qL~-----~l~~~~~~R~~~~~~y~~~l~~~~~~~~~~~~~~~~ 279 (371)
T d2fnua1 205 LFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLK-----KAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDK 279 (371)
T ss_dssp HHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHT-----THHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSC
T ss_pred cccccccccccccccccccccccccccchhhhhhhhhhh-----hccchhhhhhhhhhhhcccccccccccccccccccc
Confidence 22211 112234444443343333 23555555556666777778776 4443221 1
Q ss_pred Ccc-EEEEECCC--CCh-HHHHHHHHHcCCeEecCCCCC-------C---CCC---------CCeEEEeec--cChhHHH
Q 045431 368 NAP-YVWVQFPG--RSS-WDVFSEILEKTHVVTTPGSGF-------G---PGG---------EGFIRVSAF--GHRGNVL 422 (433)
Q Consensus 368 ~g~-~~~~~~~~--~~~-~~~~~~l~~~~gi~v~~g~~f-------~---~~~---------~~~iRi~~~--~~~~~l~ 422 (433)
... ...+.+.. ... .++...| +++||.+++.... . ..+ ...+.|-+. .+.+|++
T Consensus 280 ~~~~~~~i~~~~~~~~~r~~~~~~L-~~~gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~ 358 (371)
T d2fnua1 280 SSNHLYPILMHQKFFTCKKLILESL-HKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQ 358 (371)
T ss_dssp CCCSCEEEEECGGGGGGHHHHHHHH-HHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHH
T ss_pred cccccccccccccchhHHHHHHHHH-HHCCCCcceeCcccccCHHHHhccccCCCHHHHHHHhCeEECcCCCCCCHHHHH
Confidence 111 23333332 122 3455554 5569998765421 0 011 124555443 3899999
Q ss_pred HHHHHHHHhhC
Q 045431 423 EACKRFKHLYK 433 (433)
Q Consensus 423 ~~l~~l~~~l~ 433 (433)
..++.|.++++
T Consensus 359 ~I~~~i~~~~~ 369 (371)
T d2fnua1 359 NIAHSVLKTFE 369 (371)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988763
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=99.36 E-value=3.8e-10 Score=105.43 Aligned_cols=331 Identities=16% Similarity=0.166 Sum_probs=200.0
Q ss_pred ecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCC--CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHHHHh
Q 045431 68 LGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA--EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQIV 145 (433)
Q Consensus 68 l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l~~l 145 (433)
++.|..+.-.|+.+.+ +...-.-+ ..++-|.| .+|..++--.+..+++.-.|.+.-+.-.-.|+++....+...
T Consensus 69 ig~G~~~~~~p~~i~~-~~~~~~~~---t~ytPyqpE~sQG~Lq~l~e~q~~l~eltGmd~~n~s~~~ga~a~~~~~~~~ 144 (437)
T d1wyua1 69 LGGGVRSHHVPPVVQA-LAARGEFL---TAYTPYQPEVSQGVLQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLA 144 (437)
T ss_dssp CCSSCCCCCCCHHHHH-HHTSHHHH---HCCSCCSGGGCHHHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHH
T ss_pred cCcccCCceeCHHHHH-HHhChhhh---hhCCCcchHHHHHHHHHHHHHHHHHHHhhCCCccccCchHHHHHHHHHHHHH
Confidence 4455544456766643 33211111 22334443 566666666666667663355555666778998887753222
Q ss_pred --cCCCCEEEEeCCCChhhhhhHH----HhCCcccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccc
Q 045431 146 --FGSNVTMAVQDPSYPAYVDSSV----IMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTG 219 (433)
Q Consensus 146 --~~~gd~Vl~~~p~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG 219 (433)
....+++++..-+++.+..... .+| .+++.++.+..+....++ .+++.++++++|+. .|
T Consensus 145 ~~~~~~~~~~v~~~~~p~~~~v~~t~a~~~g------------~~vv~v~~~~~~~~~~~~--~~~~Aavmi~~Pnt-~G 209 (437)
T d1wyua1 145 LRETGRMGVLVSQGVHPEYRAVLRAYLEAVG------------AKLLTLPLEGGRTPLPEV--GEEVGAVVVQNPNF-LG 209 (437)
T ss_dssp HHHHTCCEEEEETTSCHHHHHHHHHHHHHTT------------CEEEEECCBTTBCCCCCC--CTTEEEEEEESSCT-TS
T ss_pred HhhhcccccccccccChHHhhhhhhhcccce------------eeEEeeecccccchhhhh--ccceeEEEEccccc-cc
Confidence 2456789999999988765543 445 478888876543322222 36888999999955 78
Q ss_pred cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccc----cccceeeeeccccc
Q 045431 220 AAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGF----TGVRLGWTVIPKEL 295 (433)
Q Consensus 220 ~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~----~G~r~G~l~~~~~~ 295 (433)
..- ++++|.+++++.|.+++.|..-. .... ..+..++. -.|++++ +|.||. +|--.|++.+.+++
T Consensus 210 ~~e---d~~~i~~~~h~~G~l~~~~ad~~--al~~-l~~Pg~~G----aDi~~g~-~q~fg~p~g~GGP~~G~~a~~~~l 278 (437)
T d1wyua1 210 ALE---DLGPFAEAAHGAGALFVAVADPL--SLGV-LKPPGAYG----ADIAVGD-GQSLGLPMGFGGPHFGFLATKKAF 278 (437)
T ss_dssp BCC---CHHHHHHHHHHTTCEEEEECCTT--GGGT-BCCHHHHT----CSEEEEE-CTTTTCCCGGGCSCCEEEEECGGG
T ss_pred ccc---chHHHHHHhhhccceEEeeechh--hhhc-cccccccc----cceEeec-cceeccccCCCcCccccccccchh
Confidence 763 48899999999999877664322 1111 11112221 2266777 776553 34457899998877
Q ss_pred cccCC--------------------cchhHHHHHHHhhccCCCc-HHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHH
Q 045431 296 LFSDG--------------------FPVAKDFNRIVCTCFNGAS-NISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVE 354 (433)
Q Consensus 296 ~~~~~--------------------~~~~~~~~~~~~~~~~~~~-~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 354 (433)
...-- ..-.+.+++.+..+..+.+ .+....+..++...+.+.+++..+....+++++.+
T Consensus 279 ~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~ 358 (437)
T d1wyua1 279 VRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHA 358 (437)
T ss_dssp GGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccccccccccCCcccceeecccccccccccccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHHH
Confidence 53210 1112334444444433333 33333334444434456789999999999999999
Q ss_pred HHhhc-CCeeecCCCccE--EEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec--cChhHHHHHHHHHH
Q 045431 355 TFNSL-GFKVYGGKNAPY--VWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF--GHRGNVLEACKRFK 429 (433)
Q Consensus 355 ~l~~~-g~~~~~~~~g~~--~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~l~~~l~~l~ 429 (433)
.|.+. |+....+ ..+| +.++++ .+..++.+++++. |+.. |-..|....++.+.+++. .+.++|++.+++|+
T Consensus 359 ~L~~~~g~~~~~~-~~~f~ef~v~~~-~~~~~i~k~L~d~-G~~~-~~~~~~~~~~~~lli~~TE~~tkeeiD~~v~al~ 434 (437)
T d1wyua1 359 LLLEVPGVRPFTP-KPFFNEFALALP-KDPEAVRRALAER-GFHG-ATPVPREYGENLALFAATELHEEEDLLALREALK 434 (437)
T ss_dssp HHTTSTTCEECSC-SSBCSEEEEECS-SCHHHHHHHHHHT-TCCC-CEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHH
T ss_pred HhhhcCCeeccCC-CCeeeEEEEECC-CCHHHHHHHHHhC-CCCC-CcccccCCCCCeEEEecCCCCCHHHHHHHHHHHH
Confidence 99987 7876544 3333 445554 4667777777655 8853 111122224578889974 47999999999999
Q ss_pred Hhh
Q 045431 430 HLY 432 (433)
Q Consensus 430 ~~l 432 (433)
+++
T Consensus 435 eil 437 (437)
T d1wyua1 435 EVL 437 (437)
T ss_dssp HHC
T ss_pred HhC
Confidence 875
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=98.91 E-value=9.2e-08 Score=90.21 Aligned_cols=336 Identities=13% Similarity=0.106 Sum_probs=183.8
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCC---CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA---EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDI 139 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~---~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al 139 (433)
..++-++.+.. ..+|.+.+.+.+.+ ..++-|.| ++|..+.-=.....+.+..|.+.-|.-.-.|++++-
T Consensus 65 ~~~~~lG~~~~--hy~P~v~~~~~~~~------TaYTPYQPaEiSQG~LQalfEfQtmi~eLTGMdvaNaS~yDGatA~a 136 (471)
T d1wyub1 65 TTFYPLGSCTM--KYNPKLHEEAARLF------ADLHPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGEL 136 (471)
T ss_dssp TSCCCBTTTCC--CCCCHHHHHHHHTT------SSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHH
T ss_pred ccccCCccccC--ccCcchhhhHHHHH------hccCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCccccccchHHHHHH
Confidence 34566665543 34455666554321 34455654 344333322223333332365555666667887765
Q ss_pred HHH---HHhc-CCC----CEEEEeCCCChhhh-hhHHHhCCcccccccccccceEEEeecCccCCcccCC---CCCCCcc
Q 045431 140 SRL---QIVF-GSN----VTMAVQDPSYPAYV-DSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDL---STVARTD 207 (433)
Q Consensus 140 ~~l---~~l~-~~g----d~Vl~~~p~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 207 (433)
.++ .+.. +.| ..+++..+.+.... ......+ ..++.++.+..+....+. ....++.
T Consensus 137 eA~~ma~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~a 204 (471)
T d1wyub1 137 TGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAG------------YQVREIPSGPEGEVDLEALKRELGPHVA 204 (471)
T ss_dssp HHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTT------------CEEEEECBCTTSSBCHHHHHHHCSTTEE
T ss_pred HHHHHHHHHhhhcccccccccccCCcccccceeeeeeccc------------ceeecccccccccccchhhhhhhhcccc
Confidence 542 2322 122 23445555554443 3333333 355556554332222221 1235677
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccc----cc
Q 045431 208 IIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGF----TG 283 (433)
Q Consensus 208 ~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~----~G 283 (433)
++++.+|++..+.. +..+++.+++++.+..+++|-+....... ..+-.... . .+++...++.+|. +|
T Consensus 205 ~v~v~~p~~~g~~e---~~~~~~~~~~h~~g~~~~~~~~~~~~~~~--l~~p~~~g---~-div~vg~~q~~G~P~~~GG 275 (471)
T d1wyub1 205 ALMLTNPNTLGLFE---RRILEISRLCKEAGVQLYYDGANLNAIMG--WARPGDMG---F-DVVHLNLHKTFTVPHGGGG 275 (471)
T ss_dssp EEEECSSCTTSCCC---TTHHHHHHHHHHHTCEEEEEGGGGGGTTT--TCCHHHHT---C-SEEECCTTTTTCCCCTTSC
T ss_pred ceeeccCCCccccc---chhhhhHHHHHhccccccccccchhhhhh--ccccCccc---c-ccccccccccccccccccc
Confidence 88888887755442 34678888899999888877654432211 01011111 1 1334445665543 45
Q ss_pred cceeeeeccccccccCCcch--------------hHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHH
Q 045431 284 VRLGWTVIPKELLFSDGFPV--------------AKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENT 349 (433)
Q Consensus 284 ~r~G~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 349 (433)
.-+|++.+.++++..---++ .+.+++.. .++.+.+...++..++.-.+.+.++++.+...++.
T Consensus 276 P~~G~~a~~~~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~---actnqaL~al~A~vYlsllG~~GL~elA~~~~~~A 352 (471)
T d1wyub1 276 PGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVR---SFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNA 352 (471)
T ss_dssp CCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSS---STTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccceeehhhhhccCCCceecCCCccccccCCCcccccchh---hhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 55899999888863211000 01111111 12222333333444444345577899999999999
Q ss_pred HHHHHHHhhcCCeeecCCCccE--EEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec--cChhHHHHH
Q 045431 350 DIIVETFNSLGFKVYGGKNAPY--VWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF--GHRGNVLEA 424 (433)
Q Consensus 350 ~~l~~~l~~~g~~~~~~~~g~~--~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~l~~~ 424 (433)
.++.+.|+..|+++..+ +-+| +.++++ +....++.++|+++ |+.- +...|....++.+-+++. .+.+||+.+
T Consensus 353 ~Yla~~L~~~G~~~~~~-~~ff~EFvv~~~~~~~~~~i~k~L~~~-G~~~-~~~~~p~~~~~~llv~vTE~~tkedID~l 429 (471)
T d1wyub1 353 RYLKELLKEKGYRVPYD-GPSMHEFVAQPPEGFRALDLAKGLLEL-GFHP-PTVYFPLIVKEALMVEPTETEAKETLEAF 429 (471)
T ss_dssp HHHHHHHHHTTCBCSSC-SSCCSCEEEBCSTTCCHHHHHHHHHHT-TCCC-CEESCSTTSTTCEEECCCTTSCHHHHHHH
T ss_pred HHHHHHHhhcCceeccC-cceeeEEeecCCCCCCHHHHHHHHHHc-CCCC-CcccCcCCCCCeEEEecCCCCCHHHHHHH
Confidence 99999998888887542 3232 456666 44566777777765 8843 333343334677878863 479999999
Q ss_pred HHHHHHhhC
Q 045431 425 CKRFKHLYK 433 (433)
Q Consensus 425 l~~l~~~l~ 433 (433)
++.|+++++
T Consensus 430 v~aL~~i~~ 438 (471)
T d1wyub1 430 AEAMGALLK 438 (471)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999999864
|
| >d1v4ra1 a.4.5.6 (A:1-100) Transcriptional repressor TraR, N-terminal domain {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: GntR-like transcriptional regulators domain: Transcriptional repressor TraR, N-terminal domain species: Streptomyces sp. [TaxId: 1931]
Probab=98.62 E-value=4.1e-09 Score=77.24 Aligned_cols=48 Identities=15% Similarity=0.060 Sum_probs=40.9
Q ss_pred ccccccccccccccccCCChhhHHHHHhccccccc---cccCCC-CCCcHHH
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGN---LGKLQA-GYLFPEI 49 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~---~~~l~~-g~~~~~~ 49 (433)
++++++|.+|.+++|++|||+|+||+.++||++|+ +..|.. |++....
T Consensus 16 ~~i~~~I~~g~l~~G~~LPs~r~La~~~~vSr~tvr~Al~~L~~~Gli~~~~ 67 (100)
T d1v4ra1 16 THFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSRG 67 (100)
T ss_dssp HHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEET
T ss_pred HHHHHHHHcCCCCCcCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEec
Confidence 46889999999999999999999999999999996 556654 7777543
|
| >d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: GntR-like transcriptional regulators domain: Fatty acid responsive transcription factor FadR, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.46 E-value=1e-08 Score=70.32 Aligned_cols=36 Identities=11% Similarity=-0.042 Sum_probs=33.7
Q ss_pred ccccccccccccccccCCChhhHHHHHhcccccccc
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNL 37 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~ 37 (433)
+++++.|.+|+++||++|||+|+||+.++||++|+-
T Consensus 10 e~i~~~I~~g~~~~G~~LPs~~eLa~~~~vSr~tvr 45 (74)
T d1hw1a1 10 EYIIESIWNNRFPPGTILPAERELSELIGVTRTTLR 45 (74)
T ss_dssp HHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHcCCCCCcCCCccHHHHHHHHCCCHHHHH
Confidence 568899999999999999999999999999999963
|
| >d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: GntR-like transcriptional regulators domain: Transcriptional regulator YydK species: Bacillus subtilis [TaxId: 1423]
Probab=98.38 E-value=2e-08 Score=69.89 Aligned_cols=47 Identities=15% Similarity=0.094 Sum_probs=38.5
Q ss_pred ccccccccccccccccCCChhhHHHHHhccccccccc---cCC-CCCCcHH
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLG---KLQ-AGYLFPE 48 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~---~l~-~g~~~~~ 48 (433)
+++++.|.+|.++||++|||+|+||+.++||++|+-+ .|. .|++...
T Consensus 5 ~~i~~~I~~g~l~~G~~LPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~~ 55 (78)
T d3bwga1 5 TEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQV 55 (78)
T ss_dssp HHHHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCCCcCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEE
Confidence 4688999999999999999999999999999999643 332 3665553
|
| >d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: GntR-like transcriptional regulators domain: Putative transcriptional regulator RHA1 ro03477 species: Rhodococcus sp. RHA1 [TaxId: 101510]
Probab=97.93 E-value=4.8e-07 Score=60.92 Aligned_cols=36 Identities=17% Similarity=-0.084 Sum_probs=32.4
Q ss_pred ccccccccccccccccCCChhhHHHHHhccccccccc
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLG 38 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~ 38 (433)
++++++|.+|+++||++|| +|+||+.++||++|+-.
T Consensus 9 ~~l~~~I~~g~~~~G~~l~-~~~La~~~~vSr~tvr~ 44 (69)
T d2hs5a1 9 GILRDAIIDGTFRPGARLS-EPDICAALDVSRNTVRE 44 (69)
T ss_dssp HHHHHHHHHTSSCTTCEEC-HHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHcCCCCCcCccC-HHHHHHHHCCCHHHHHH
Confidence 4678999999999999997 89999999999999643
|
| >d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: Homeodomain-like family: Recombinase DNA-binding domain domain: HIN recombinase (DNA-binding domain) species: Synthetic
Probab=86.91 E-value=0.068 Score=31.57 Aligned_cols=21 Identities=5% Similarity=-0.005 Sum_probs=18.7
Q ss_pred hhhHHHHHhccccccccccCC
Q 045431 21 QEEKIAYKTKVSRNGNLGKLQ 41 (433)
Q Consensus 21 s~r~la~~~~vs~~t~~~~l~ 41 (433)
|..++|..+|||+.|+|..+.
T Consensus 23 s~~~iA~~~gVSr~TiYry~p 43 (47)
T d1ijwc_ 23 PRQQLAIIFGIGVSTLYRYFP 43 (47)
T ss_dssp CHHHHHHHHTCCHHHHHHHSC
T ss_pred CHHHHHHHHCcCHHHHHhhCC
Confidence 589999999999999997664
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=83.61 E-value=4 Score=28.55 Aligned_cols=96 Identities=9% Similarity=0.154 Sum_probs=58.3
Q ss_pred CCCCCcEEEcCChHHHHHHHHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC
Q 045431 123 GIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST 202 (433)
Q Consensus 123 ~~~~~~i~~~~G~~~al~~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (433)
.+....|++..|+..+..-+..++..|-.|.+.+|....-...+...+ .+...... +.. +.
T Consensus 9 ~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~-------------~i~~~~~~----~~~--~d 69 (113)
T d1pjqa1 9 QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEG-------------MLTLVEGP----FDE--TL 69 (113)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTT-------------SCEEEESS----CCG--GG
T ss_pred EeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcC-------------CceeeccC----CCH--HH
Confidence 455678999999999998888888889888887776654332222222 12222211 111 11
Q ss_pred CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEE-EEec
Q 045431 203 VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSII-VYDS 245 (433)
Q Consensus 203 ~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~l-i~De 245 (433)
..+..+++.++. + .+.=.++.+.|++.++++ ++|+
T Consensus 70 l~~~~lv~~at~-d-------~~~n~~i~~~a~~~~ilVNv~D~ 105 (113)
T d1pjqa1 70 LDSCWLAIAATD-D-------DTVNQRVSDAAESRRIFCNVVDA 105 (113)
T ss_dssp GTTCSEEEECCS-C-------HHHHHHHHHHHHHTTCEEEETTC
T ss_pred hCCCcEEeecCC-C-------HHHHHHHHHHHHHcCCEEEeCCC
Confidence 234455554322 2 333478999999999987 5665
|