Citrus Sinensis ID: 045474

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-
MDTFLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCAKTNMVMVFGEITTKAKVDYEKVVRDTCRGIGFVSADVGLDADKCKVLVNIEEQSPEIAQSVHGNLSKRPEEIGAGDQGHMFGYATDETPELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENFDFRPGMIAINLDLKRGGNFRYQKTAACGHFGRDDPDFTWETVKLLKPTEA
cccccccccccccccccccHHHHHHHHHHHHHHHcccccEEEEEEccccEEEEEEEEcccEEEcHHHHHHHHccccccccccccccccccEEEEEcccccHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccEEEEEEEccccccccEEEEEEEEcccccccccHHHHHHHHHHccccccccccccccccEEEEcccccEEEccccccccccccEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEEEEccccccccHHHHHHHHHHHccccHHHHHHHHccccccccHHHHccccccccccccccccccccccccccc
cccEEEEcccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEEEcccEEEEEEEEEcccEEcHHHHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHcHHHHHHHcHHHccccccccEEEEcccccHHHcccHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEccccEEEEEEEEEEEEEccccccccHHHHHHHHHHHHHcccccHHHHccccEEEEcccccEEEccccccccccccEEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcEEEEEEEEcccccEEEEEEccccccccHHHHHHHHHHHccccHHHHHHHcccccccccEEEEEEEcccccccccccccccccHHHHHcc
mdtflftsesvneghpdklCDQISDAILDACleqdpeskvacetcaktNMVMVFGEITTKAKVDYEKVVRDTCRgigfvsadvgldadkcKVLVNIEEQSPEIAQsvhgnlskrpeeigagdqghmfgyatdetpelmPLTLVLATKLGARLTevrknktcpwlrpdgktqVTVEYRneggamvpQRVHTVLIStqhdetvtKEQISEdlkehvikpvipahfldektifhlnpsgrfviggphgdagltgRKIIIDtyggwgahgggafsgkdstkvdrSAAYIVRQAAKSVVASGLARRCLVQVSYaigvpeplsvfvdtygtgkisdKDILALIKEnfdfrpgmiainldlkrggnfryqktaacghfgrddpdftWETVkllkptea
MDTFLFtsesvneghpdKLCDQISDAILDACLEQDPESKVACETCAKTNMVMVFGEITTKAKVDYEKVVRDTCRGIGfvsadvgldaDKCKVLVNIEEqspeiaqsvhgnLSKRPEEIGAGDQGHMFGYATDETPELMPLTLVLATKLGARltevrknktcpwlrpdgktqVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSyaigvpeplsVFVDTYGTGKISDKDILALIKENFDFRPGMIAINLDLKRGGNFRYQKTAAcghfgrddpdFTWETVKLLKPTEA
MDTFLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCAKTNMVMVFGEITTKAKVDYEKVVRDTCRGIGFVSADVGLDADKCKVLVNIEEQSPEIAQSVHGNLSKRPEEIGAGDQGHMFGYATDETPELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYggwgahgggafsgKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENFDFRPGMIAINLDLKRGGNFRYQKTAACGHFGRDDPDFTWETVKLLKPTEA
******************LCDQISDAILDACLEQDPESKVACETCAKTNMVMVFGEITTKAKVDYEKVVRDTCRGIGFVSADVGLDADKCKVLVNIE***************************HMFGYATDETPELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENFDFRPGMIAINLDLKRGGNFRYQKTAACGHFGRDDPDFTWETVKL******
*DTFLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCAKTNMVMVFGEITTKAKVDYEKVVRDTCRGIGFVSADVGLDADKCKVLVNIEEQSPEIAQSVHGNLSKRPEEIGAGDQGHMFGYATDETPELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENFDFRPGMIAINLDLKRGGNFRYQKTAACGHFGRDDPDFTWETVKLLKPTEA
************EGHPDKLCDQISDAILDACLEQDPESKVACETCAKTNMVMVFGEITTKAKVDYEKVVRDTCRGIGFVSADVGLDADKCKVLVNIEEQSPEIAQSVHGNLSKRPEEIGAGDQGHMFGYATDETPELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENFDFRPGMIAINLDLKRGGNFRYQKTAACGHFGRDDPDFTWETVKLLKPTEA
*********SVNEGHPDKLCDQISDAILDACLEQDPESKVACETCAKTNMVMVFGEITTKAKVDYEKVVRDTCRGIGFVSADVGLDADKCKVLVNIEEQSPEIAQSVHGNLSKRPEEIGAGDQGHMFGYATDETPELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENFDFRPGMIAINLDLKRGGNFRYQKTAACGHFGRDDPDFTWETVKLLKPTEA
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MDTFLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCAKTNMVMVFGEITTKAKVDYEKVVRDTCRGIGFVSADVGLDADKCKVLVNIEEQSPEIAQSVHGNLSKRPEEIGAGDQGHMFGYATDETPELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENFDFRPGMIAINLDLKRGGNFRYQKTAACGHFGRDDPDFTWETVKLLKPTEA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query391 2.2.26 [Sep-21-2011]
Q6SYB9390 S-adenosylmethionine synt N/A no 0.992 0.994 0.896 0.0
A7QJG1389 S-adenosylmethionine synt yes no 0.989 0.994 0.925 0.0
A7PQS0391 S-adenosylmethionine synt yes no 1.0 1.0 0.905 0.0
Q96553390 S-adenosylmethionine synt N/A no 0.992 0.994 0.912 0.0
P50302390 S-adenosylmethionine synt N/A no 0.992 0.994 0.907 0.0
A9PHC5390 S-adenosylmethionine synt yes no 0.994 0.997 0.904 0.0
P50301390 S-adenosylmethionine synt N/A no 0.992 0.994 0.902 0.0
P43282390 S-adenosylmethionine synt N/A no 0.992 0.994 0.899 0.0
Q38JH8390 S-adenosylmethionine synt N/A no 0.992 0.994 0.894 0.0
Q9M7K8390 S-adenosylmethionine synt N/A no 0.992 0.994 0.891 0.0
>sp|Q6SYB9|METK2_TOBAC S-adenosylmethionine synthase 2 OS=Nicotiana tabacum GN=SAMS2 PE=2 SV=1 Back     alignment and function desciption
 Score =  728 bits (1878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/388 (89%), Positives = 366/388 (94%)

Query: 1   MDTFLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCAKTNMVMVFGEITTK 60
           M+TFLFTSESVNEGHPDKLCDQ+SDAILDACLEQDPESKVACETC KTNMVMVFGEITTK
Sbjct: 1   METFLFTSESVNEGHPDKLCDQVSDAILDACLEQDPESKVACETCTKTNMVMVFGEITTK 60

Query: 61  AKVDYEKVVRDTCRGIGFVSADVGLDADKCKVLVNIEEQSPEIAQSVHGNLSKRPEEIGA 120
           AKVDYEK+VRDTCRGIGF SADVGLDAD CKVLVNIE+QSP+IAQ VHG+L+K+PEEIGA
Sbjct: 61  AKVDYEKIVRDTCRGIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGA 120

Query: 121 GDQGHMFGYATDETPELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEG 180
           GDQGHMFGYATDETPELMPLT VLAT+LGA+LTEVRKNKTCPWLRPDGKTQVTVEY+N+ 
Sbjct: 121 GDQGHMFGYATDETPELMPLTHVLATQLGAKLTEVRKNKTCPWLRPDGKTQVTVEYKNDN 180

Query: 181 GAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDEKTIFHLNPSGRFVI 240
           GAMVP RVHTVLISTQHDE VT EQI++DLKEHVIKPVIPA +LDE TIFHLNPSGRFVI
Sbjct: 181 GAMVPIRVHTVLISTQHDEGVTNEQIAQDLKEHVIKPVIPAKYLDENTIFHLNPSGRFVI 240

Query: 241 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDSTKVDRSAAYIVRQAAKSVVASGLAR 300
           GGPHGDAGLTGRKIIIDTYGGWGAHG GAFSGKD TKVDRS AYIVRQAAKSVVA+GLAR
Sbjct: 241 GGPHGDAGLTGRKIIIDTYGGWGAHGEGAFSGKDPTKVDRSGAYIVRQAAKSVVAAGLAR 300

Query: 301 RCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENFDFRPGMIAINLDLKRGGNF 360
           RC+VQVSYAIGV EPLSVFVDTY TG I DKDILALIKENFDFRPGMIAINLDL RGGNF
Sbjct: 301 RCIVQVSYAIGVAEPLSVFVDTYKTGTIPDKDILALIKENFDFRPGMIAINLDLLRGGNF 360

Query: 361 RYQKTAACGHFGRDDPDFTWETVKLLKP 388
           RYQKTAA GHFGRD+ DFTWETVK LKP
Sbjct: 361 RYQKTAAYGHFGRDEADFTWETVKALKP 388
Catalyzes the formation of S-adenosylmethionine from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
Nicotiana tabacum (taxid: 4097)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 6
>sp|A7QJG1|METK3_VITVI S-adenosylmethionine synthase 3 OS=Vitis vinifera GN=METK3 PE=3 SV=1 Back     alignment and function description
>sp|A7PQS0|METK1_VITVI S-adenosylmethionine synthase 1 OS=Vitis vinifera GN=METK1 PE=3 SV=1 Back     alignment and function description
>sp|Q96553|METK3_CATRO S-adenosylmethionine synthase 3 OS=Catharanthus roseus GN=SAMS3 PE=1 SV=1 Back     alignment and function description
>sp|P50302|METK2_ACTCH S-adenosylmethionine synthase 2 OS=Actinidia chinensis GN=SAM2 PE=2 SV=1 Back     alignment and function description
>sp|A9PHC5|METK4_POPTR S-adenosylmethionine synthase 4 OS=Populus trichocarpa GN=METK4 PE=2 SV=1 Back     alignment and function description
>sp|P50301|METK1_ACTCH S-adenosylmethionine synthase 1 OS=Actinidia chinensis GN=SAM1 PE=2 SV=1 Back     alignment and function description
>sp|P43282|METK3_SOLLC S-adenosylmethionine synthase 3 OS=Solanum lycopersicum GN=SAM3 PE=2 SV=1 Back     alignment and function description
>sp|Q38JH8|METK2_SOLTU S-adenosylmethionine synthase 2 OS=Solanum tuberosum GN=METK2 PE=2 SV=1 Back     alignment and function description
>sp|Q9M7K8|METK1_TOBAC S-adenosylmethionine synthase 1 OS=Nicotiana tabacum GN=SAMS1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query391
75292099390 RecName: Full=S-adenosylmethionine synth 0.992 0.994 0.896 0.0
225441193389 PREDICTED: S-adenosylmethionine synthase 0.989 0.994 0.925 0.0
449451048390 PREDICTED: S-adenosylmethionine synthase 0.994 0.997 0.912 0.0
225436494394 PREDICTED: S-adenosylmethionine synthase 1.0 0.992 0.905 0.0
255556894390 s-adenosylmethionine synthetase, putativ 0.992 0.994 0.912 0.0
223635283391 RecName: Full=S-adenosylmethionine synth 1.0 1.0 0.905 0.0
3024148390 RecName: Full=S-adenosylmethionine synth 0.992 0.994 0.912 0.0
147797671391 hypothetical protein VITISV_033661 [Viti 1.0 1.0 0.905 0.0
356536939390 PREDICTED: S-adenosylmethionine synthase 0.994 0.997 0.904 0.0
1709004390 RecName: Full=S-adenosylmethionine synth 0.992 0.994 0.907 0.0
>gi|75292099|sp|Q6SYB9.1|METK2_TOBAC RecName: Full=S-adenosylmethionine synthase 2; Short=AdoMet synthase 2; AltName: Full=Methionine adenosyltransferase 2; Short=MAT 2 gi|38261499|gb|AAR15895.1| S-adenosyl-L-methionine synthetase [Nicotiana tabacum] Back     alignment and taxonomy information
 Score =  728 bits (1878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/388 (89%), Positives = 366/388 (94%)

Query: 1   MDTFLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCAKTNMVMVFGEITTK 60
           M+TFLFTSESVNEGHPDKLCDQ+SDAILDACLEQDPESKVACETC KTNMVMVFGEITTK
Sbjct: 1   METFLFTSESVNEGHPDKLCDQVSDAILDACLEQDPESKVACETCTKTNMVMVFGEITTK 60

Query: 61  AKVDYEKVVRDTCRGIGFVSADVGLDADKCKVLVNIEEQSPEIAQSVHGNLSKRPEEIGA 120
           AKVDYEK+VRDTCRGIGF SADVGLDAD CKVLVNIE+QSP+IAQ VHG+L+K+PEEIGA
Sbjct: 61  AKVDYEKIVRDTCRGIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGA 120

Query: 121 GDQGHMFGYATDETPELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEG 180
           GDQGHMFGYATDETPELMPLT VLAT+LGA+LTEVRKNKTCPWLRPDGKTQVTVEY+N+ 
Sbjct: 121 GDQGHMFGYATDETPELMPLTHVLATQLGAKLTEVRKNKTCPWLRPDGKTQVTVEYKNDN 180

Query: 181 GAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDEKTIFHLNPSGRFVI 240
           GAMVP RVHTVLISTQHDE VT EQI++DLKEHVIKPVIPA +LDE TIFHLNPSGRFVI
Sbjct: 181 GAMVPIRVHTVLISTQHDEGVTNEQIAQDLKEHVIKPVIPAKYLDENTIFHLNPSGRFVI 240

Query: 241 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDSTKVDRSAAYIVRQAAKSVVASGLAR 300
           GGPHGDAGLTGRKIIIDTYGGWGAHG GAFSGKD TKVDRS AYIVRQAAKSVVA+GLAR
Sbjct: 241 GGPHGDAGLTGRKIIIDTYGGWGAHGEGAFSGKDPTKVDRSGAYIVRQAAKSVVAAGLAR 300

Query: 301 RCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENFDFRPGMIAINLDLKRGGNF 360
           RC+VQVSYAIGV EPLSVFVDTY TG I DKDILALIKENFDFRPGMIAINLDL RGGNF
Sbjct: 301 RCIVQVSYAIGVAEPLSVFVDTYKTGTIPDKDILALIKENFDFRPGMIAINLDLLRGGNF 360

Query: 361 RYQKTAACGHFGRDDPDFTWETVKLLKP 388
           RYQKTAA GHFGRD+ DFTWETVK LKP
Sbjct: 361 RYQKTAAYGHFGRDEADFTWETVKALKP 388

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225441193|ref|XP_002270100.1| PREDICTED: S-adenosylmethionine synthase 3 isoform 2 [Vitis vinifera] gi|359482256|ref|XP_003632745.1| PREDICTED: S-adenosylmethionine synthase 3 [Vitis vinifera] gi|223635285|sp|A7QJG1.1|METK3_VITVI RecName: Full=S-adenosylmethionine synthase 3; Short=AdoMet synthase 3; AltName: Full=Methionine adenosyltransferase 3; Short=MAT 3 Back     alignment and taxonomy information
>gi|449451048|ref|XP_004143274.1| PREDICTED: S-adenosylmethionine synthase 2-like [Cucumis sativus] gi|449482419|ref|XP_004156276.1| PREDICTED: S-adenosylmethionine synthase 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225436494|ref|XP_002273336.1| PREDICTED: S-adenosylmethionine synthase 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255556894|ref|XP_002519480.1| s-adenosylmethionine synthetase, putative [Ricinus communis] gi|223541343|gb|EEF42894.1| s-adenosylmethionine synthetase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|223635283|sp|A7PQS0.1|METK1_VITVI RecName: Full=S-adenosylmethionine synthase 1; Short=AdoMet synthase 1; AltName: Full=Methionine adenosyltransferase 1; Short=MAT 1 Back     alignment and taxonomy information
>gi|3024148|sp|Q96553.1|METK3_CATRO RecName: Full=S-adenosylmethionine synthase 3; Short=AdoMet synthase 3; AltName: Full=Methionine adenosyltransferase 3; Short=MAT 3 gi|1655580|emb|CAA95858.1| S-adenosyl-L-methionine synthetase 3 [Catharanthus roseus] Back     alignment and taxonomy information
>gi|147797671|emb|CAN72082.1| hypothetical protein VITISV_033661 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356536939|ref|XP_003536989.1| PREDICTED: S-adenosylmethionine synthase 2-like [Glycine max] Back     alignment and taxonomy information
>gi|1709004|sp|P50302.1|METK2_ACTCH RecName: Full=S-adenosylmethionine synthase 2; Short=AdoMet synthase 2; AltName: Full=Methionine adenosyltransferase 2; Short=MAT 2 gi|726028|gb|AAA81377.1| S-adenosylmethionine synthetase [Actinidia chinensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query391
TAIR|locus:2058011390 MAT3 "methionine adenosyltrans 0.992 0.994 0.853 3.4e-180
TAIR|locus:2089070393 MTO3 "METHIONINE OVER-ACCUMULA 0.989 0.984 0.834 6.7e-175
TAIR|locus:2141385393 SAM-2 "S-adenosylmethionine sy 0.989 0.984 0.824 1.8e-174
TAIR|locus:2196160393 SAM1 "S-adenosylmethionine syn 0.989 0.984 0.832 4.3e-173
DICTYBASE|DDB_G0291179384 metK "S-adenosylmethionine syn 0.976 0.994 0.657 5.6e-132
UNIPROTKB|A7E3T7395 MAT2A "S-adenosylmethionine sy 0.966 0.956 0.615 1.5e-122
UNIPROTKB|D0G777395 MATA2 "S-adenosylmethionine sy 0.966 0.956 0.615 1.5e-122
UNIPROTKB|E2R431395 MAT2A "Uncharacterized protein 0.966 0.956 0.612 5.1e-122
UNIPROTKB|P31153395 MAT2A "S-adenosylmethionine sy 0.966 0.956 0.612 5.1e-122
MGI|MGI:2443731395 Mat2a "methionine adenosyltran 0.966 0.956 0.610 6.5e-122
TAIR|locus:2058011 MAT3 "methionine adenosyltransferase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1749 (620.7 bits), Expect = 3.4e-180, P = 3.4e-180
 Identities = 331/388 (85%), Positives = 353/388 (90%)

Query:     1 MDTFLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCAKTNMVMVFGEITTK 60
             M+TFLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETC KTNMVMVFGEITT 
Sbjct:     1 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCTKTNMVMVFGEITTA 60

Query:    61 AKVDYEKVVRDTCRGIGFVSADVGLDADKCKVLVNIEEQSPEIAQSVHGNLSKRPEEIGA 120
             AKVDYEK+VR TCR IGF+SADVGLDADKC VLVNIE+QSP+IAQ VHG+L+K+PE+IGA
Sbjct:    61 AKVDYEKIVRSTCREIGFISADVGLDADKCNVLVNIEQQSPDIAQGVHGHLTKKPEDIGA 120

Query:   121 GDQGHMFGYATDETPELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEG 180
             GDQGHMFGYATDETPELMPLT VLATKLGA+LTEVRKNKTCPWLRPDGKTQVTVEY+N+G
Sbjct:   121 GDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNKTCPWLRPDGKTQVTVEYKNDG 180

Query:   181 GAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDEKTIFHLNPSGRFVI 240
             GAM+P RVHTVLISTQHDETVT ++I+ DLKEHVIKPVIPA +LD+ TIFHLNPSGRFVI
Sbjct:   181 GAMIPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPAKYLDDNTIFHLNPSGRFVI 240

Query:   241 GGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLAR 300
             GGPHGDAGLTGRKIIIDTY             KD TKVDRS AYIVRQAAKSVVA+GLAR
Sbjct:   241 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVAAGLAR 300

Query:   301 RCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENFDFRPGMIAINLDLKRGGNF 360
             RC+VQVSYAIGVPEPLSVFVDTY TG I DKDIL LIKE FDFRPGM+AINLDLKRGGNF
Sbjct:   301 RCIVQVSYAIGVPEPLSVFVDTYKTGTIPDKDILVLIKEAFDFRPGMMAINLDLKRGGNF 360

Query:   361 RYQKTAACGHFGRDDPDFTWETVKLLKP 388
             R+QKTAA GHFGRDDPDFTWE VK LKP
Sbjct:   361 RFQKTAAYGHFGRDDPDFTWEVVKPLKP 388
GO:0004478 "methionine adenosyltransferase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006556 "S-adenosylmethionine biosynthetic process" evidence=IEA;ISS
GO:0005507 "copper ion binding" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0006598 "polyamine catabolic process" evidence=RCA
GO:0006816 "calcium ion transport" evidence=RCA
GO:0006970 "response to osmotic stress" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0009698 "phenylpropanoid metabolic process" evidence=RCA
GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA
GO:0046686 "response to cadmium ion" evidence=RCA
TAIR|locus:2089070 MTO3 "METHIONINE OVER-ACCUMULATOR 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2141385 SAM-2 "S-adenosylmethionine synthetase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196160 SAM1 "S-adenosylmethionine synthetase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0291179 metK "S-adenosylmethionine synthetase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|A7E3T7 MAT2A "S-adenosylmethionine synthase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|D0G777 MATA2 "S-adenosylmethionine synthase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2R431 MAT2A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P31153 MAT2A "S-adenosylmethionine synthase isoform type-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2443731 Mat2a "methionine adenosyltransferase II, alpha" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q96551METK1_CATRO2, ., 5, ., 1, ., 60.87211.00.9949N/Ano
Q96552METK2_CATRO2, ., 5, ., 1, ., 60.88110.98970.9847N/Ano
Q96553METK3_CATRO2, ., 5, ., 1, ., 60.91230.99230.9948N/Ano
A9PHE9METK5_POPTR2, ., 5, ., 1, ., 60.87560.98720.9772nono
A7PRJ6METK4_VITVI2, ., 5, ., 1, ., 60.86441.00.9949nono
Q9SBQ5METK2_PETHY2, ., 5, ., 1, ., 60.88400.99230.9948N/Ano
P43282METK3_SOLLC2, ., 5, ., 1, ., 60.89940.99230.9948N/Ano
A9PHC5METK4_POPTR2, ., 5, ., 1, ., 60.90480.99480.9974yesno
Q6SYB9METK2_TOBAC2, ., 5, ., 1, ., 60.89690.99230.9948N/Ano
A9PDZ7METK2_POPTR2, ., 5, ., 1, ., 60.88110.98970.9847yesno
A7PQS0METK1_VITVI2, ., 5, ., 1, ., 60.90531.01.0yesno
Q9LUT2METK4_ARATH2, ., 5, ., 1, ., 60.86820.98970.9847nono
A7NVX9METK2_VITVI2, ., 5, ., 1, ., 60.87590.98970.9847nono
P43280METK1_SOLLC2, ., 5, ., 1, ., 60.87080.98970.9847N/Ano
A9PEK8METK3_POPTR2, ., 5, ., 1, ., 60.87820.98720.9772nono
Q9SJL8METK3_ARATH2, ., 5, ., 1, ., 60.88650.99230.9948yesno
Q9LGU6METK3_ORYSJ2, ., 5, ., 1, ., 60.85640.99740.9848nono
Q9LDQ7METK_CAMSI2, ., 5, ., 1, ., 60.87430.97690.9720N/Ano
A4ULF8METK_MEDFA2, ., 5, ., 1, ., 60.86260.98720.9747N/Ano
A9P2P4METK3_PICSI2, ., 5, ., 1, ., 60.85931.00.9923N/Ano
P43281METK2_SOLLC2, ., 5, ., 1, ., 60.86300.98970.9847N/Ano
A2Y053METK1_ORYSI2, ., 5, ., 1, ., 60.86560.98970.9772N/Ano
Q8GTL5METK_CARPA2, ., 5, ., 1, ., 60.8750.98200.8951N/Ano
P50301METK1_ACTCH2, ., 5, ., 1, ., 60.90200.99230.9948N/Ano
P50302METK2_ACTCH2, ., 5, ., 1, ., 60.90720.99230.9948N/Ano
P47916METK_POPDE2, ., 5, ., 1, ., 60.87300.98720.9772N/Ano
A4PU48METK_MEDTR2, ., 5, ., 1, ., 60.86520.98720.9796N/Ano
A7Q0V4METK5_VITVI2, ., 5, ., 1, ., 60.86951.01.0nono
Q94FA5METK4_BRAJU2, ., 5, ., 1, ., 60.88650.99230.9948N/Ano
Q6F3F0METK3_ATRNU2, ., 5, ., 1, ., 60.86820.98720.9747N/Ano
Q8W3Y4METK_PHALU2, ., 5, ., 1, ., 60.86660.99740.9948N/Ano
Q9FUZ1METK2_BRAJU2, ., 5, ., 1, ., 60.86820.98970.9847N/Ano
Q944U4METK_DENCR2, ., 5, ., 1, ., 60.88370.98720.9772N/Ano
P93438METK2_ORYSJ2, ., 5, ., 1, ., 60.85890.99480.9873nono
Q9SBQ7METK3_PETHY2, ., 5, ., 1, ., 60.86701.00.9949N/Ano
Q9M7K8METK1_TOBAC2, ., 5, ., 1, ., 60.89170.99230.9948N/Ano
A9NYY0METK2_PICSI2, ., 5, ., 1, ., 60.87850.98970.9847N/Ano
Q307Y9METK1_SOLTU2, ., 5, ., 1, ., 60.87330.98970.9847N/Ano
A7L2Z6METK_GOSHI2, ., 5, ., 1, ., 60.87850.98970.9847N/Ano
Q0DKY4METK1_ORYSJ2, ., 5, ., 1, ., 60.86560.98970.9772yesno
Q9FVG7METK2_PINCO2, ., 5, ., 1, ., 60.85931.00.9949N/Ano
A9P822METK1_POPTR2, ., 5, ., 1, ., 60.87080.98720.9846nono
Q4H1G3METK2_BETVU2, ., 5, ., 1, ., 60.86560.98970.9847N/Ano
Q38JH8METK2_SOLTU2, ., 5, ., 1, ., 60.89430.99230.9948N/Ano
A7QJG1METK3_VITVI2, ., 5, ., 1, ., 60.92500.98970.9948yesno
Q9AT55METK2_ELAUM2, ., 5, ., 1, ., 60.86560.98970.9847N/Ano
Q9AT56METK1_ELAUM2, ., 5, ., 1, ., 60.87080.98970.9847N/Ano
A9NUH8METK1_PICSI2, ., 5, ., 1, ., 60.88541.00.9949N/Ano
Q9FPL6METK2_SUASA2, ., 5, ., 1, ., 60.87330.98970.9797N/Ano
P48498METK1_PETHY2, ., 5, ., 1, ., 60.88910.99230.9948N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.5.1.60.993
3rd Layer2.5.10.998

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query391
PLN02243386 PLN02243, PLN02243, S-adenosylmethionine synthase 0.0
PTZ00104398 PTZ00104, PTZ00104, S-adenosylmethionine synthase; 0.0
PRK05250384 PRK05250, PRK05250, S-adenosylmethionine synthetas 0.0
COG0192388 COG0192, MetK, S-adenosylmethionine synthetase [Co 0.0
TIGR01034377 TIGR01034, metK, S-adenosylmethionine synthetase 0.0
PRK12459386 PRK12459, PRK12459, S-adenosylmethionine synthetas 0.0
pfam02773138 pfam02773, S-AdoMet_synt_C, S-adenosylmethionine s 4e-87
pfam02772119 pfam02772, S-AdoMet_synt_M, S-adenosylmethionine s 2e-76
pfam00438100 pfam00438, S-AdoMet_synt_N, S-adenosylmethionine s 5e-63
>gnl|CDD|177886 PLN02243, PLN02243, S-adenosylmethionine synthase Back     alignment and domain information 
 Score =  822 bits (2124), Expect = 0.0
 Identities = 346/386 (89%), Positives = 366/386 (94%)

Query: 1   MDTFLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCAKTNMVMVFGEITTK 60
           M+TFLFTSESVNEGHPDKLCDQISDA+LDACL QDP+SKVACETC KTNMVMVFGEITTK
Sbjct: 1   METFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTK 60

Query: 61  AKVDYEKVVRDTCRGIGFVSADVGLDADKCKVLVNIEEQSPEIAQSVHGNLSKRPEEIGA 120
           AKVDYEK+VRDTCR IGFVS DVGLDADKCKVLVNIE+QSP+IAQ VHG+L+K+PEEIGA
Sbjct: 61  AKVDYEKIVRDTCREIGFVSDDVGLDADKCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGA 120

Query: 121 GDQGHMFGYATDETPELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEG 180
           GDQGHMFGYATDETPELMPLT VLATKLGARLTEVRKN TCPWLRPDGKTQVTVEY+NEG
Sbjct: 121 GDQGHMFGYATDETPELMPLTHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYKNEG 180

Query: 181 GAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDEKTIFHLNPSGRFVI 240
           GAMVP RVHTVLISTQHDETVT ++I+ DLKEHVIKPVIP  +LDEKTIFHLNPSGRFVI
Sbjct: 181 GAMVPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 240

Query: 241 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDSTKVDRSAAYIVRQAAKSVVASGLAR 300
           GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKD TKVDRS AYIVRQAAKSVVA+GLAR
Sbjct: 241 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVAAGLAR 300

Query: 301 RCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENFDFRPGMIAINLDLKRGGNF 360
           RC+VQVSYAIGVPEPLSVFVDTYGTGKI DK+IL ++KENFDFRPGMIAINLDLKRGGN 
Sbjct: 301 RCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKENFDFRPGMIAINLDLKRGGNG 360

Query: 361 RYQKTAACGHFGRDDPDFTWETVKLL 386
           R+QKTAA GHFGRDDPDFTWE VK L
Sbjct: 361 RFQKTAAYGHFGRDDPDFTWEVVKPL 386

Length = 386
>gnl|CDD|240268 PTZ00104, PTZ00104, S-adenosylmethionine synthase; Provisional Back     alignment and domain information
>gnl|CDD|235374 PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated Back     alignment and domain information
>gnl|CDD|223270 COG0192, MetK, S-adenosylmethionine synthetase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|233241 TIGR01034, metK, S-adenosylmethionine synthetase Back     alignment and domain information
>gnl|CDD|237106 PRK12459, PRK12459, S-adenosylmethionine synthetase; Provisional Back     alignment and domain information
>gnl|CDD|111646 pfam02773, S-AdoMet_synt_C, S-adenosylmethionine synthetase, C-terminal domain Back     alignment and domain information
>gnl|CDD|217221 pfam02772, S-AdoMet_synt_M, S-adenosylmethionine synthetase, central domain Back     alignment and domain information
>gnl|CDD|201226 pfam00438, S-AdoMet_synt_N, S-adenosylmethionine synthetase, N-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 391
COG0192388 MetK S-adenosylmethionine synthetase [Coenzyme met 100.0
PLN02243386 S-adenosylmethionine synthase 100.0
PTZ00104398 S-adenosylmethionine synthase; Provisional 100.0
PRK05250384 S-adenosylmethionine synthetase; Validated 100.0
PRK12459386 S-adenosylmethionine synthetase; Provisional 100.0
TIGR01034377 metK S-adenosylmethionine synthetase. Tandem isozy 100.0
KOG1506383 consensus S-adenosylmethionine synthetase [Coenzym 100.0
PF02773138 S-AdoMet_synt_C: S-adenosylmethionine synthetase, 100.0
PF02772120 S-AdoMet_synt_M: S-adenosylmethionine synthetase, 100.0
PF00438100 S-AdoMet_synt_N: S-adenosylmethionine synthetase, 100.0
PRK04439399 S-adenosylmethionine synthetase; Provisional 98.93
PF01941396 AdoMet_Synthase: S-adenosylmethionine synthetase ( 98.93
COG1812400 MetK Archaeal S-adenosylmethionine synthetase [Ami 98.18
>COG0192 MetK S-adenosylmethionine synthetase [Coenzyme metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-188  Score=1374.98  Aligned_cols=377  Identities=62%  Similarity=1.006  Sum_probs=368.3

Q ss_pred             ccceecccCCCCCCchhhhhHHHHHHHHHhhcCCCCcEEEEEeeeeCeEEEEEEEeecccccHHHHHHHHHHhcCCCCCC
Q 045474            3 TFLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCAKTNMVMVFGEITTKAKVDYEKVVRDTCRGIGFVSAD   82 (391)
Q Consensus         3 ~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivr~~i~~IGY~~~~   82 (391)
                      .+|||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||+|+++||+++++|++|++|||++++
T Consensus         4 ~~lFTSESVseGHPDKi~DqISDaILD~~L~~Dp~srVAcEt~v~tg~v~i~GEitt~~~vd~~~~~r~~I~~IGY~~~~   83 (388)
T COG0192           4 YFLFTSESVSEGHPDKICDQISDAILDAILKQDPNSRVACETLVTTGLVVIAGEITTSAYVDIVNIARKTIKEIGYTESD   83 (388)
T ss_pred             cceeeeccccCCCChHHHHHHhHHHHHHHHhcCCCceEEEEEEEecCeEEEEEEEecCccccHHHHHHHHHHHhCCCccc
Confidence            56999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCceEEEEeeccCChhhhhccCCCCCCCCCCCCCCcceeeeeEecCCCCCCCCchHHHHHHHHHHHHHHHHcCCCC
Q 045474           83 VGLDADKCKVLVNIEEQSPEIAQSVHGNLSKRPEEIGAGDQGHMFGYATDETPELMPLTLVLATKLGARLTEVRKNKTCP  162 (391)
Q Consensus        83 ~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~g~~~  162 (391)
                      +|||++||.|+++|++|||||+|||++..+ ..+++|||||||||||||||||+||||||+|||+|++||+++||+|.+|
T Consensus        84 ~Gfd~~t~~vl~~i~~QSpDIaqgVd~~~~-~~~~~GAGDQGimFGyA~~ET~~lMPlpI~lAH~l~~r~a~~Rk~g~l~  162 (388)
T COG0192          84 YGFDAKTCAVLVAIGEQSPDIAQGVDEADE-ELDEIGAGDQGIMFGYACNETPELMPLPISLAHRLLRRLAEVRKNGELP  162 (388)
T ss_pred             cCcCccceEEEeecccCChhHHHhhhhccc-chhhcCCCcceeEeeeecCCcccccChHHHHHHHHHHHHHHHHhcCCCc
Confidence            999999999999999999999999996532 3568999999999999999999999999999999999999999999999


Q ss_pred             cccCCceeeEEEEEecCCCcceeeEEeEEEEeeecCCCCCHHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCeEEcC
Q 045474          163 WLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDEKTIFHLNPSGRFVIGG  242 (391)
Q Consensus       163 ~l~pD~KtQVtv~Y~~~~g~~~p~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~FviGG  242 (391)
                      |||||+||||||+|++ ++  +|++|+|||+||||++++++++||+.++|+||+|++|+++++++|+|+|||||||||||
T Consensus       163 ~LrpD~KsQVtv~Y~~-~~--~p~~idtIvvStQH~~~i~~~~l~~~v~e~iI~pv~~~~~l~~~tk~~INPtGrFViGG  239 (388)
T COG0192         163 WLRPDAKSQVTVEYED-NG--KPVRIDTIVVSTQHDPDISQEQLREDVIEEIIKPVLPEELLDDKTKYFINPTGRFVIGG  239 (388)
T ss_pred             ccCCCcceeEEEEEcC-CC--CceeEEEEEEEeccCcccCHHHHHHHHHHHHHhhhccHhhcCcCceEEECCCCCeeeCC
Confidence            9999999999999986 35  89999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcccCCceEEEecCCCccccccccCcCCCCCccchhhhhHHHHHHHHHHHhccccceEEEEEEEecccceeEEEEee
Q 045474          243 PHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDT  322 (391)
Q Consensus       243 P~~DtGLTGRKiiVDTYGG~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~c~vQlsYAIGv~~Pvsi~V~t  322 (391)
                      |+||||||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+|||
T Consensus       240 P~gD~GLTGRKIIVDTYGG~a~HGGGAFSGKDptKVDRSaAYaARyvAKNiVAAglA~~ceVQlsYAIGva~PvSi~Vdt  319 (388)
T COG0192         240 PQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLADRCEVQLSYAIGVAEPVSISVDT  319 (388)
T ss_pred             CCccccCccceEEEEcCCCccCCCCccCCCCCCcccchHHHHHHHHHHHHHHHhhhhhheEEEEEeEecccCceEEEEEc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcCCHHHHHHHHHHhCCCChHHHHHHhccccccccccccccccccCCCCCCCCCccccccCC
Q 045474          323 YGTGKISDKDILALIKENFDFRPGMIAINLDLKRGGNFRYQKTAACGHFGRDDPDFTWETVKLLK  387 (391)
Q Consensus       323 fgT~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~P~~~iY~~ta~yGHFGr~~~~fpWE~~d~~~  387 (391)
                      |||+++++++|.++|+++|||||++||+.|+|++|   ||++||+||||||++ +|||||+|+++
T Consensus       320 fgT~kvse~~i~~~v~~~FdlrP~gIi~~LdL~~p---iY~~tAaYGHFGr~~-~~pWEk~dkv~  380 (388)
T COG0192         320 FGTGKVSEEKIEEAVRKVFDLRPAGIIKMLDLLRP---IYRKTAAYGHFGRED-DFPWEKLDKVD  380 (388)
T ss_pred             cCCcccCHHHHHHHHHHhcCCCHHHHHHHhccCCc---cchhcccccccCCCC-CCCccchhhHH
Confidence            99999999999999999999999999999999999   999999999999987 89999999874

>PLN02243 S-adenosylmethionine synthase Back     alignment and domain information
>PTZ00104 S-adenosylmethionine synthase; Provisional Back     alignment and domain information
>PRK05250 S-adenosylmethionine synthetase; Validated Back     alignment and domain information
>PRK12459 S-adenosylmethionine synthetase; Provisional Back     alignment and domain information
>TIGR01034 metK S-adenosylmethionine synthetase Back     alignment and domain information
>KOG1506 consensus S-adenosylmethionine synthetase [Coenzyme transport and metabolism] Back     alignment and domain information
>PF02773 S-AdoMet_synt_C: S-adenosylmethionine synthetase, C-terminal domain; InterPro: IPR022630 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold Back     alignment and domain information
>PF02772 S-AdoMet_synt_M: S-adenosylmethionine synthetase, central domain; InterPro: IPR022629 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold Back     alignment and domain information
>PF00438 S-AdoMet_synt_N: S-adenosylmethionine synthetase, N-terminal domain; InterPro: IPR022628 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold Back     alignment and domain information
>PRK04439 S-adenosylmethionine synthetase; Provisional Back     alignment and domain information
>PF01941 AdoMet_Synthase: S-adenosylmethionine synthetase (AdoMet synthetase); InterPro: IPR002795 A highly diverged class of S-adenosylmethionine synthetases have been identified in the archaea Back     alignment and domain information
>COG1812 MetK Archaeal S-adenosylmethionine synthetase [Amino acid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query391
2p02_A396 Crystal Structure Of The Alpha Subunit Of Human S- 1e-134
1qm4_A396 Methionine Adenosyltransferase Complexed With A L-M 1e-130
2obv_A384 Crystal Structure Of The Human S-adenosylmethionine 1e-129
3so4_A415 Methionine-Adenosyltransferase From Entamoeba Histo 1e-120
1fug_A383 S-adenosylmethionine Synthetase Length = 383 1e-108
3iml_A399 Crystal Structure Of S-Adenosylmethionine Synthetas 1e-108
1xrb_A383 S-adenosylmethionine Synthetase (mat, Atp: L-methio 1e-105
3s82_A407 Structure Of A S-Adenosylmethionine Synthetase From 1e-96
3rv2_A407 Crystal Structure Of S-Adenosylmethionine Synthetas 9e-96
3tde_A408 Crystal Structure Of S-Adenosylmethionine Synthetas 4e-94
>pdb|2P02|A Chain A, Crystal Structure Of The Alpha Subunit Of Human S- Adenosylmethionine Synthetase 2 Length = 396 Back     alignment and structure 
Iteration: 1

 Score =  474 bits (1220), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 236/385 (61%), Positives = 289/385 (75%), Gaps = 7/385 (1%)
Query: 3   TFLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCAKTNMVMVFGEITTKAK 62
           TFLFTSESV EGHPDK+CDQISDA+LDA L+QDP++KVACET AKT M+++ GEIT++A 
Sbjct: 18  TFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAA 77
Query: 63  VDYEKVVRDTCRGIGFVSADVGLDADKCKVLVNIEEQSPEIAQSVHGNLSKRPEEIGAGD 122
           VDY+KVVR+  + IG+  +  G D   C VLV +E+QSP+IAQ VH  L +  E+IGAGD
Sbjct: 78  VDYQKVVREAVKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGVH--LDRNEEDIGAGD 135
Query: 123 QGHMFGYATDETPELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGA 182
           QG MFGYATDET E MPLT+VLA KL A+L E+R+N T PWLRPD KTQVTV+Y  + GA
Sbjct: 136 QGLMFGYATDETEECMPLTIVLAHKLNAKLAELRRNGTLPWLRPDSKTQVTVQYMQDRGA 195
Query: 183 MVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDEKTIFHLNPSGRFVIGG 242
           ++P RVHT++IS QHDE V  +++ + LKE VIK V+PA +LDE TI+HL PSGRFVIGG
Sbjct: 196 VLPIRVHTIVISVQHDEEVCLDEMRDALKEKVIKAVVPAKYLDEDTIYHLQPSGRFVIGG 255
Query: 243 PHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRC 302
           P GDAGLTGRKII+DTY             KD TKVDRSAAY  R  AKS+V  GL RR 
Sbjct: 256 PQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLCRRV 315
Query: 303 LVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENFDFRPGMIAINLDLKRGGNFRY 362
           LVQVSYAIGV  PLS+ +  YGT + S++++L ++K+NFD RPG+I  +LDLK+     Y
Sbjct: 316 LVQVSYAIGVSHPLSISIFHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKKP---IY 372
Query: 363 QKTAACGHFGRDDPDFTWETVKLLK 387
           Q+TAA GHFGRD   F WE  K LK
Sbjct: 373 QRTAAYGHFGRD--SFPWEVPKKLK 395
>pdb|1QM4|A Chain A, Methionine Adenosyltransferase Complexed With A L-Methionine Analogous Length = 396 Back     alignment and structure
>pdb|2OBV|A Chain A, Crystal Structure Of The Human S-adenosylmethionine Synthetase 1 In Complex With The Product Length = 384 Back     alignment and structure
>pdb|3SO4|A Chain A, Methionine-Adenosyltransferase From Entamoeba Histolytica Length = 415 Back     alignment and structure
>pdb|1FUG|A Chain A, S-adenosylmethionine Synthetase Length = 383 Back     alignment and structure
>pdb|3IML|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase From Burkholderia Pseudomallei Length = 399 Back     alignment and structure
>pdb|1XRB|A Chain A, S-adenosylmethionine Synthetase (mat, Atp: L-methionine S- Adenosyltransferase, E.c.2.5.1.6) In Which Met Residues Are Replaced With Selenomethionine Residues (mse) Length = 383 Back     alignment and structure
>pdb|3S82|A Chain A, Structure Of A S-Adenosylmethionine Synthetase From Mycobacterium Avium Length = 407 Back     alignment and structure
>pdb|3RV2|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase From Mycobacterium Marinum Length = 407 Back     alignment and structure
>pdb|3TDE|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase Rv1392 From Mycobacterium Tuberculosis Length = 408 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query391
3so4_A415 Methionine-adenosyltransferase; structural genomic 0.0
2p02_A396 S-adenosylmethionine synthetase isoform type-2; st 0.0
3iml_A399 S-adenosylmethionine synthetase; structural genomi 0.0
3s82_A407 S-adenosylmethionine synthase; seattle structural 0.0
1p7l_A383 S-adenosylmethionine synthetase; AMPPNP, SAM, tran 0.0
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>3so4_A Methionine-adenosyltransferase; structural genomics, medical structural genomics of pathogen protozoa, MSGPP; 3.18A {Entamoeba histolytica} Length = 415 Back     alignment and structure
 Score =  752 bits (1945), Expect = 0.0
 Identities = 228/387 (58%), Positives = 281/387 (72%), Gaps = 5/387 (1%)

Query: 1   MDTFLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCAKTNMVMVFGEITTK 60
              F FTSESV+ GHPDK+CDQISDAILDACL QDP+S VACET  KT +++V GEITT 
Sbjct: 20  GSRFFFTSESVSGGHPDKMCDQISDAILDACLAQDPKSHVACETATKTGLILVLGEITTN 79

Query: 61  AKVDYEKVVRDTCRGIGFVSADVGLDADKCKVLVNIEEQSPEIAQSVHGNLSKRPEEIGA 120
           A +D  K+VR   + IG+   + G D   C VL  +E+QS +IA+ VH    K+ E+IGA
Sbjct: 80  AVIDIPKIVRGVVKSIGYDDTNKGFDYQTCSVLSCVEQQSQDIAKGVHVE--KKEEDIGA 137

Query: 121 GDQGHMFGYATDETPELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEG 180
           GDQG MFGYATDE+ E+MPLT VL+TKL  RL E R+    PWLRPD K+QVT+EY    
Sbjct: 138 GDQGIMFGYATDESKEMMPLTHVLSTKLILRLQECREKGILPWLRPDSKSQVTLEYEEVE 197

Query: 181 GAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDEKTIFHLNPSGRFVI 240
           G + P RVHT++ISTQH + V+ E+I++ L+E V + VIP   +D+K + + NPSGRFVI
Sbjct: 198 GHLKPIRVHTIVISTQHADNVSNEEIAKGLEEEVTQKVIPKELMDDKMLRYYNPSGRFVI 257

Query: 241 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDSTKVDRSAAYIVRQAAKSVVASGLAR 300
           GGP GDAGLTGRKII+DTYGGWGAHGGGAFSGKDS+KVDRS AY  R  AKS+V +GL  
Sbjct: 258 GGPMGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDSSKVDRSGAYCARWIAKSLVHAGLCH 317

Query: 301 RCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENFDFRPGMIAINLDLKRGGNF 360
           R LVQ+SYAIGV  PLS+ V+TYGTG   +  ++ ++ +NFD RPGMI   L L R    
Sbjct: 318 RVLVQLSYAIGVSHPLSINVNTYGTGICDESILVDIVNKNFDMRPGMIIKELGLTRP--- 374

Query: 361 RYQKTAACGHFGRDDPDFTWETVKLLK 387
            +QKTA  GHFGR+DPDF WE  K L+
Sbjct: 375 IFQKTAVGGHFGRNDPDFKWEFPKELE 401
>2p02_A S-adenosylmethionine synthetase isoform type-2; structural genomics, structural genomics consortium, SGC, transferase; HET: SAM; 1.21A {Homo sapiens} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1qm4_A 1o92_A* 1o93_A* 1o90_A* 1o9t_A 2obv_A* Length = 396 Back     alignment and structure
>3iml_A S-adenosylmethionine synthetase; structural genomics, ATP-BI cobalt, magnesium, metal-binding, nucleotide-binding, one-C metabolism; 2.35A {Burkholderia pseudomallei} Length = 399 Back     alignment and structure
>3s82_A S-adenosylmethionine synthase; seattle structural genomics center for infectious disease, S adenosylmethionine synthetase, transferase; 1.73A {Mycobacterium avium} PDB: 3tde_A 3rv2_A Length = 407 Back     alignment and structure
>1p7l_A S-adenosylmethionine synthetase; AMPPNP, SAM, transferase; HET: SAM ANP PPK; 2.50A {Escherichia coli} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1fug_A 1mxb_A* 1mxc_A* 1mxa_A* 1rg9_A* 1xra_A 1xrb_A 1xrc_A Length = 383 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query391
3so4_A415 Methionine-adenosyltransferase; structural genomic 100.0
3iml_A399 S-adenosylmethionine synthetase; structural genomi 100.0
3s82_A407 S-adenosylmethionine synthase; seattle structural 100.0
2p02_A396 S-adenosylmethionine synthetase isoform type-2; st 100.0
1p7l_A383 S-adenosylmethionine synthetase; AMPPNP, SAM, tran 100.0
4hpv_A407 S-adenosylmethionine synthase; structural genomics 98.53
>3so4_A Methionine-adenosyltransferase; structural genomics, medical structural genomics of pathogen protozoa, MSGPP; 3.18A {Entamoeba histolytica} Back     alignment and structure
Probab=100.00  E-value=4.1e-193  Score=1423.70  Aligned_cols=383  Identities=60%  Similarity=0.983  Sum_probs=366.3

Q ss_pred             CccceecccCCCCCCchhhhhHHHHHHHHHhhcCCCCcEEEEEeeeeCeEEEEEEEeecccccHHHHHHHHHHhcCCCCC
Q 045474            2 DTFLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCAKTNMVMVFGEITTKAKVDYEKVVRDTCRGIGFVSA   81 (391)
Q Consensus         2 ~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivr~~i~~IGY~~~   81 (391)
                      .+||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++||+++|||++|++|||+++
T Consensus        21 ~~~lFTSESVseGHPDKicDqISDAILDa~L~qDp~arVAcEt~vttg~V~v~GEItt~a~vD~~~ivR~~ik~IGY~~~  100 (415)
T 3so4_A           21 SRFFFTSESVSGGHPDKMCDQISDAILDACLAQDPKSHVACETATKTGLILVLGEITTNAVIDIPKIVRGVVKSIGYDDT  100 (415)
T ss_dssp             -CEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEECSSEEEEEEEEECSCCCCHHHHHHHHHHHHTCEEG
T ss_pred             cceeEeeccccCCCChHHHhhHhHHHHHHHHhcCCCCcEEEEEEeecCeEEEEEEEecccccCHHHHHHHHHhccCCCCc
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCceEEEEeeccCChhhhhccCCCCCCCCCCCCCCcceeeeeEecCCCCCCCCchHHHHHHHHHHHHHHHHcCCC
Q 045474           82 DVGLDADKCKVLVNIEEQSPEIAQSVHGNLSKRPEEIGAGDQGHMFGYATDETPELMPLTLVLATKLGARLTEVRKNKTC  161 (391)
Q Consensus        82 ~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~g~~  161 (391)
                      ++|||++||+|+++|++|||||||||+.+  +..+++||||||||||||||||||||||||+|||+|++||+++||+|++
T Consensus       101 ~~gFd~~tc~Vl~~i~~QSpDIaqGVd~~--~~~~~~GAGDQGiMFGYAtdET~elMPlpi~lAH~L~~rla~~Rk~g~l  178 (415)
T 3so4_A          101 NKGFDYQTCSVLSCVEQQSQDIAKGVHVE--KKEEDIGAGDQGIMFGYATDESKEMMPLTHVLSTKLILRLQECREKGIL  178 (415)
T ss_dssp             GGTEETTTCEEEEEEEEECCC-------------CCCCCSSCEEEEEEEETTSTTSSCHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             ccCccCCceEEEEecccCChhhhhccccc--cchhhcCCCcceeEEEEecCCCcccCCcHHHHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999953  2345799999999999999999999999999999999999999999999


Q ss_pred             CcccCCceeeEEEEEecCCCcceeeEEeEEEEeeecCCCCCHHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCeEEc
Q 045474          162 PWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDEKTIFHLNPSGRFVIG  241 (391)
Q Consensus       162 ~~l~pD~KtQVtv~Y~~~~g~~~p~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~FviG  241 (391)
                      ||||||+||||||+|++++|.++|+||+||||||||++++++++|+++|+|+||+||+|++|++++|+||||||||||||
T Consensus       179 ~~LrPD~KtQVTveY~~~~g~~~P~rv~tvViStQH~~~v~~~~l~~~i~e~VI~~vip~~~ld~~t~~~INPtGrFViG  258 (415)
T 3so4_A          179 PWLRPDSKSQVTLEYEEVEGHLKPIRVHTIVISTQHADNVSNEEIAKGLEEEVTQKVIPKELMDDKMLRYYNPSGRFVIG  258 (415)
T ss_dssp             TTEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEECTTSCHHHHHHHHHHHTHHHHSCTTTCCSSCEEEESTTCCCCSC
T ss_pred             CeeccCcceEEEEEEEcCCCCceeeEEEEEEEEEecCCCCCHHHHHHHHHHHHHHHhcCcccCCCCeEEEECCCCCeEEC
Confidence            99999999999999987667789999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcccCCceEEEecCCCccccccccCcCCCCCccchhhhhHHHHHHHHHHHhccccceEEEEEEEecccceeEEEEe
Q 045474          242 GPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVD  321 (391)
Q Consensus       242 GP~~DtGLTGRKiiVDTYGG~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~c~vQlsYAIGv~~Pvsi~V~  321 (391)
                      ||+||+|||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+||
T Consensus       259 GP~gDaGLTGRKIIVDTYGG~~~HGGGAFSGKDptKVDRSaAYaAR~vAKniVAAGLA~rc~VQlsYAIGva~PvSi~V~  338 (415)
T 3so4_A          259 GPMGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDSSKVDRSGAYCARWIAKSLVHAGLCHRVLVQLSYAIGVSHPLSINVN  338 (415)
T ss_dssp             TTTTSCEETTSCTTTTTTTTSSCCCSCCCTTBCTTSHHHHHHHHHHHHHHHHHHTTSCSEEEEEEEECTTCSSCSEEEEE
T ss_pred             CCcccccccCceEEEEccCCcccCCCccccCCCccccccchhHHHHHHHHHHHHcCCcCeEEEEEEEeeccccceEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCcCCHHHHHHHHHHhCCCChHHHHHHhccccccccccccccccccCCCCCCCCCccccccCCCC
Q 045474          322 TYGTGKISDKDILALIKENFDFRPGMIAINLDLKRGGNFRYQKTAACGHFGRDDPDFTWETVKLLKPT  389 (391)
Q Consensus       322 tfgT~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~P~~~iY~~ta~yGHFGr~~~~fpWE~~d~~~~~  389 (391)
                      ||||+++++++|.++|+++|||||++||++|+|+||   ||++||+||||||++++||||++|+|.++
T Consensus       339 TfGT~~~~~~~i~~~v~~~FdlrP~~Ii~~L~L~~P---iY~~tAaYGHFGR~~~~f~WE~~d~l~~~  403 (415)
T 3so4_A          339 TYGTGICDESILVDIVNKNFDMRPGMIIKELGLTRP---IFQKTAVGGHFGRNDPDFKWEFPKELEIP  403 (415)
T ss_dssp             ECSCCSSCHHHHHHHHHHHCCCCHHHHHHHHTTTSS---CCTGGGSSCSSSCCCTTCTTSSCCCCCCC
T ss_pred             eCCCCcCCHHHHHHHHHHhcCCCHHHHHHHcCCCCC---cchhhcccccCCCCCCCCCCcCCcccCCC
Confidence            999999999999999999999999999999999999   99999999999999989999999999875
>3iml_A S-adenosylmethionine synthetase; structural genomics, ATP-BI cobalt, magnesium, metal-binding, nucleotide-binding, one-C metabolism; 2.35A {Burkholderia pseudomallei} Back     alignment and structure
>3s82_A S-adenosylmethionine synthase; seattle structural genomics center for infectious disease, S adenosylmethionine synthetase, transferase; 1.73A {Mycobacterium avium} PDB: 3tde_A 3rv2_A Back     alignment and structure
>2p02_A S-adenosylmethionine synthetase isoform type-2; structural genomics, structural genomics consortium, SGC, transferase; HET: SAM; 1.21A {Homo sapiens} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1qm4_A 1o92_A* 1o93_A* 1o90_A* 1o9t_A 2obv_A* Back     alignment and structure
>1p7l_A S-adenosylmethionine synthetase; AMPPNP, SAM, transferase; HET: SAM ANP PPK; 2.50A {Escherichia coli} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1fug_A 1mxb_A* 1mxc_A* 1mxa_A* 1rg9_A* 1xra_A 1xrb_A 1xrc_A Back     alignment and structure
>4hpv_A S-adenosylmethionine synthase; structural genomics, PSI-biology; 2.21A {Sulfolobus solfataricus P2} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 391
d2p02a3144 d.130.1.1 (A:274-417) S-adenosylmethionine synthet 8e-68
d1mxaa3152 d.130.1.1 (A:232-383) S-adenosylmethionine synthet 8e-65
d2p02a2126 d.130.1.1 (A:148-273) S-adenosylmethionine synthet 4e-57
d1mxaa2124 d.130.1.1 (A:108-231) S-adenosylmethionine synthet 3e-54
d2p02a1110 d.130.1.1 (A:38-147) S-adenosylmethionine syntheta 1e-49
d1mxaa1102 d.130.1.1 (A:1-102) S-adenosylmethionine synthetas 1e-45
>d2p02a3 d.130.1.1 (A:274-417) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]} Length = 144 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: S-adenosylmethionine synthetase
superfamily: S-adenosylmethionine synthetase
family: S-adenosylmethionine synthetase
domain: S-adenosylmethionine synthetase
species: Human (Homo sapiens), isoform type-2 [TaxId: 9606]

 Score =  208 bits (532), Expect = 8e-68
 Identities = 98/148 (66%), Positives = 114/148 (77%), Gaps = 5/148 (3%)

Query: 240 IGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDSTKVDRSAAYIVRQAAKSVVASGLA 299
           IGGP GDAGLTGRKII+DTYGGWGAHGGGAFSGKD TKVDRSAAY  R  AKS+V  GL 
Sbjct: 1   IGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLC 60

Query: 300 RRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENFDFRPGMIAINLDLKRGGN 359
           RR LVQVSYAIGV  PLS+ +  YGT + S++++L ++K+NFD RPG+I  +LDLK+   
Sbjct: 61  RRVLVQVSYAIGVSHPLSISIFHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKKP-- 118

Query: 360 FRYQKTAACGHFGRDDPDFTWETVKLLK 387
             YQ+TAA GHFGRD   F WE  K LK
Sbjct: 119 -IYQRTAAYGHFGRD--SFPWEVPKKLK 143
>d1mxaa3 d.130.1.1 (A:232-383) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]} Length = 152 Back     information, alignment and structure
>d2p02a2 d.130.1.1 (A:148-273) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]} Length = 126 Back     information, alignment and structure
>d1mxaa2 d.130.1.1 (A:108-231) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]} Length = 124 Back     information, alignment and structure
>d2p02a1 d.130.1.1 (A:38-147) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]} Length = 110 Back     information, alignment and structure
>d1mxaa1 d.130.1.1 (A:1-102) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]} Length = 102 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query391
d2p02a3144 S-adenosylmethionine synthetase {Human (Homo sapie 100.0
d1mxaa3152 S-adenosylmethionine synthetase {Escherichia coli 100.0
d2p02a2126 S-adenosylmethionine synthetase {Human (Homo sapie 100.0
d1mxaa2124 S-adenosylmethionine synthetase {Escherichia coli 100.0
d2p02a1110 S-adenosylmethionine synthetase {Human (Homo sapie 100.0
d1mxaa1102 S-adenosylmethionine synthetase {Escherichia coli 100.0
>d2p02a3 d.130.1.1 (A:274-417) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: S-adenosylmethionine synthetase
superfamily: S-adenosylmethionine synthetase
family: S-adenosylmethionine synthetase
domain: S-adenosylmethionine synthetase
species: Human (Homo sapiens), isoform type-2 [TaxId: 9606]

Probab=100.00  E-value=1.6e-84  Score=572.79  Aligned_cols=144  Identities=68%  Similarity=1.124  Sum_probs=141.7

Q ss_pred             EcCCCCCcccCCceEEEecCCCccccccccCcCCCCCccchhhhhHHHHHHHHHHHhccccceEEEEEEEecccceeEEE
Q 045474          240 IGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVF  319 (391)
Q Consensus       240 iGGP~~DtGLTGRKiiVDTYGG~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~c~vQlsYAIGv~~Pvsi~  319 (391)
                      ||||+||||||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+
T Consensus         1 iGGp~~d~GlTGRKiivDtYGg~~~hGGGafsgKD~tKvDRSaAY~AR~iAKniVaaglA~~c~VQlsYAIGva~Pvsi~   80 (144)
T d2p02a3           1 IGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLCRRVLVQVSYAIGVSHPLSIS   80 (144)
T ss_dssp             SCGGGTSCEETTSCTTTTTTTTSSCCCSCCCTTBCTTCHHHHHHHHHHHHHHHHHHTTSCSEEEEEEEECBTCCSCSEEE
T ss_pred             CCCCccccCCccceEEEEcCCCccccCCcCCCCCceehhHHHHHHHHHHHHHHHHHhCCCCeeEEEEEeecCccccceEE
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCcCCHHHHHHHHHHhCCCChHHHHHHhccccccccccccccccccCCCCCCCCCccccccCCC
Q 045474          320 VDTYGTGKISDKDILALIKENFDFRPGMIAINLDLKRGGNFRYQKTAACGHFGRDDPDFTWETVKLLKP  388 (391)
Q Consensus       320 V~tfgT~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~P~~~iY~~ta~yGHFGr~~~~fpWE~~d~~~~  388 (391)
                      ||||||+++++++|.++|+++|||||++||++|+|++|   ||++||+||||||+  +||||++|++++
T Consensus        81 VdtfGT~~~~~~~i~~~I~~~FDl~P~~II~~L~L~~P---iY~~TAaYGHFGR~--~f~WEk~dkve~  144 (144)
T d2p02a3          81 IFHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKKP---IYQRTAAYGHFGRD--SFPWEVPKKLKY  144 (144)
T ss_dssp             EECTTCCSSCHHHHHHHHHHHCCCCHHHHHHHHTTTSS---CGGGGSSSCSSSST--TCGGGSCCCCCC
T ss_pred             EEeCCCcccCHHHHHHHHHhccCCCHHHHHHHhCCCCC---cchhccCccCCCCC--CCCeeccccccC
Confidence            99999999999999999999999999999999999999   99999999999997  599999999874
>d1mxaa3 d.130.1.1 (A:232-383) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2p02a2 d.130.1.1 (A:148-273) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]} Back     information, alignment and structure
>d1mxaa2 d.130.1.1 (A:108-231) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2p02a1 d.130.1.1 (A:38-147) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]} Back     information, alignment and structure
>d1mxaa1 d.130.1.1 (A:1-102) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure