Citrus Sinensis ID: 045475

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660--
MSFLDNIGELVLNKKRNSNEFENGYLFAKKQKTESFEFGVVSPPEFSNCILAPLPLSFVPLGAEPISSFPSVANDDASKKSEEAEPVLRACKQFWKAGDYEGGNAGDSLSNSVGMDHLRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGFKTSTMRLGADVIVFSRCQGTDGKCSTQSIGMLSYTFLRGTGKEDIVVPMVDYEKRGEHWDMLVRSSPEDWSRNLETVVQWSPYTSEEDLTQQFNFMKDQGTRIVMYNLWEDDEGKLEMDFDSDPHDIQLRGVNREEKNIEMAKKYPNSRHFLTYRHSLRSYASILYLRLPPGFRIILRGQDVEHHNIVNDMMLIKELRYKPTSLPERMAANVTIGFVKDAHYHIDIQGFNVYHKNRLIKPFWRVWNAAGSDGRGAIGVLEANFVEPAHDKQGFERTPVLARLEARLVAIQKEYWCTNCHEVGYAPRRHSKTPVSSKKESKTSDKDKSNVHQILKGGECSSFKMEYISEFDKRLQEESASEDRSCHEASPAIDESQRGPGSHGSSPHGTRNLLSKLKEVENKLRELEKKEKVLIDDNASLINIFQEELKRSDAKVERLRERLRVRTTSIDLH
ccHHHHHHHHHHccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHcccHHHHHcccEEEEEEEEEccccccEEEEEEEccccccHHHHHHHHHcccccccccccccccccccccEEEcccccEEEEEEEEccccccccccEEcccccEEEEccccccEEEccEEccccccEEEEEEccccHHccHHHHHHHHccccccHHHHHHHHccccccccEEEEEEEcccccccccccccccccccccccccHHHHHHHHHcccccccccccccHHHHHHHHHHcccccccEEEEEcccccEEEEHHHHHcccEEEEccccccccccEEEEEEEEEEcccccccccEEEEEEccccccHHHHHHcccccccccEEEEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
cccHHccHHHHHcccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccEEEcHHHHccccccccHHHHHHHHHHHccccccccccEEEEEEEEEEcccccEEEEEEEccccccHHHHHHHHHccccccccccccEEEcccccccccccccccEEEEEcccccccccccEEEEHHHHHHHHHcccccEEEEcccccccccccEEEEcccHHHHHHHHHHHHHccccccHHHHHHHHHHccccccEEEEEEEcEcccccEEEcccccccHEEEccccccccccccccccccccccccHHHHHHHHHHHHHHccccccEEEEEccEEEEHHHHHHcccccEEEEEcccccccEEEEEEEEEEccccccccEEEEEEEEccccEEcHHHHcccccccccEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
MSFLDNIGELVLnkkrnsnefeNGYLFAKKqktesfefgvvsppefsncilaplplsfvplgaepissfpsvanddaskkseeaEPVLRACKQFWKagdyeggnagdslsnsvgmdhlrvhpkflhsnatSHKWALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVedngggmtpdkmRQCMSLGYSAKSKLANTigqygngfktstmrlGADVIVFsrcqgtdgkcstqsigMLSYTFlrgtgkedivvpmvdyekrgehWDMLvrsspedwsrnletvvqwspytseeDLTQQFNFMKDQGTRIVMYnlweddegklemdfdsdphdiqlrgvnreEKNIEMakkypnsrhfltYRHSLRSYASILYLrlppgfriilrgqdvehhniVNDMMLIKELrykptslpermaANVTIGfvkdahyhidiqGFNVyhknrlikpFWRVWnaagsdgrgaigvleanfvepahdkqgfertPVLARLEARLVAIQKEYwctnchevgyaprrhsktpvsskkesktsdkdksnvhqilkggecssFKMEYISEFDKRLQeesasedrscheaspaidesqrgpgshgssphgtRNLLSKLKEVENKLRELEKKEKVLIDDNASLINIFQEELKRSDAKVERLRERLRVRTTSIDLH
msfldnigelvlnkkrnsnefENGYLFAKKQKTESFEFGVVSPPEFSNCILAPLPLSFVPLGAEPISSFPSVANDDASKKSEEAEPVLRACKQFWKAGDYEGGNAGDSLSNSVGMDHLRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGFKTSTMRLGADVIVFSRCQgtdgkcstqsiGMLSYTFLRGTGKEDIVVPMVDYEKRGEHWDMLvrsspedwsrNLETVVQWSPYTSEEDLTQQFNFMKDQGTRIVMYNLWEDDEGKLEMDFDSDPHDIQLrgvnreekniemakkypnsrhfLTYRHSLRSYASILYLRLPPGFRIILRGQDVEHHNIVNDMMLIKELRYKPTSLPERMAANVTIGFVKDAHYHIDIQGFNVYHKNRLIKPFWRVWNAAGSDGRGAIGVLEANFVepahdkqgfertPVLARLEARLVAIQKEYWCTNCHEvgyaprrhsktpvsskkesktsdkdksnvhqilkggecssFKMEYISEFDKRLQEESASEDRSCHEaspaidesqrgpgshgssphgtrnlLSKLKEVENKLRELekkekvliddnaslinifqeelkrsdakverlrerlrvrttsidlh
MSFLDNIGELVLNKKRNSNEFENGYLFAKKQKTESFEFGVVSPPEFSNCILAPLPLSFVPLGAEPISSFPSVANDDASKKSEEAEPVLRACKQFWKAGDYEGGNAGDSLSNSVGMDHLRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGFKTSTMRLGADVIVFSRCQGTDGKCSTQSIGMLSYTFLRGTGKEDIVVPMVDYEKRGEHWDMLVRSSPEDWSRNLETVVQWSPYTSEEDLTQQFNFMKDQGTRIVMYNLWEDDEGKLEMDFDSDPHDIQLRGVNREEKNIEMAKKYPNSRHFLTYRHSLRSYASILYLRLPPGFRIILRGQDVEHHNIVNDMMLIKELRYKPTSLPERMAANVTIGFVKDAHYHIDIQGFNVYHKNRLIKPFWRVWNAAGSDGRGAIGVLEANFVEPAHDKQGFERTPVLARLEARLVAIQKEYWCTNCHEVGYAPRRHSKTPVsskkesktsdkdksNVHQILKGGECSSFKMEYISEFDKRLQEESASEDRSCHEASPAIDESQRgpgshgssphgTRNLLSklkevenklrelekkekvlIDDNASLINIFQEELKRSDAKverlrerlrvrttSIDLH
*********LVL********FENGYLFAKKQKTESFEFGVVSPPEFSNCILAPLPLSFVPLGA***********************VLRACKQFWKAGDYEG**********VGMDHLRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVED***********QCMSLGYSAKSKLANTIGQYGNGFKTSTMRLGADVIVFSRCQGTDGKCSTQSIGMLSYTFLRGTGKEDIVVPMVDYEKRGEHWDMLVRSSPEDWSRNLETVVQWSPYTSEEDLTQQFNFMKDQGTRIVMYNLWEDD********************************YPNSRHFLTYRHSLRSYASILYLRLPPGFRIILRGQDVEHHNIVNDMMLIKELRYKPTSLPERMAANVTIGFVKDAHYHIDIQGFNVYHKNRLIKPFWRVWNAAGSDGRGAIGVLEANFVEPAHDKQGFERTPVLARLEARLVAIQKEYWCTNCHEVGYA**********************************************************************************************************VLIDDNASLINIFQ***************************
**FLDNIGELVL**********************************************************************************************************RVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGY********TIGQYGNGFKTSTMRLGADVIVFSRCQGTDGKCSTQSIGMLSYTFLRGTGKEDIVVPMVDYEKRGEHWDMLVRSSPEDWSRNLETVVQWSPYTSEEDLTQQFNFMKDQGTRIVMYNLWEDDEGKLEMDFDSDPHDIQLRGVNR************NSRHFLTYRHSLRSYASILYLRLPPGFRIILRGQDVEHHNIVNDMMLIKELRYKPTSLPERMAANVTIGFVKDAHYHIDIQGFNVYHKNRLIKPFWRVWNAAGSDGRGAIGVLEANFVEPAHDKQGFERTPVLARLEARLVAIQKEYWCTNCHEVGYA****************************LKGGECSSF**************************************************************************************************************
MSFLDNIGELVLNKKRNSNEFENGYLFAKKQKTESFEFGVVSPPEFSNCILAPLPLSFVPLGAEPISSFPSV**************VLRACKQFWKAGDYEGGNAGDSLSNSVGMDHLRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGFKTSTMRLGADVIVFSRCQGTDGKCSTQSIGMLSYTFLRGTGKEDIVVPMVDYEKRGEHWDMLVRSSPEDWSRNLETVVQWSPYTSEEDLTQQFNFMKDQGTRIVMYNLWEDDEGKLEMDFDSDPHDIQLRGVNREEKNIEMAKKYPNSRHFLTYRHSLRSYASILYLRLPPGFRIILRGQDVEHHNIVNDMMLIKELRYKPTSLPERMAANVTIGFVKDAHYHIDIQGFNVYHKNRLIKPFWRVWNAAGSDGRGAIGVLEANFVEPAHDKQGFERTPVLARLEARLVAIQKEYWCTNCHEVGYAP***********************VHQILKGGECSSFKMEYISEFD*************************************TRNLLSKLKEVENKLRELEKKEKVLIDDNASLINIFQEELKRSDAKVERLRERLRVRTTSIDLH
*SFLDNIGELVLNKKRNSNEFENGYLFAKKQKTESFEFGVVSPPEFSNCILAPLPLSFVPLGAEPISSFPSVA******KSEEAEPVLRACKQFWKAGDYEGGNAGDSLSNSVGMDHLRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGFKTSTMRLGADVIVFSRCQGTDGKCSTQSIGMLSYTFLRGTGKEDIVVPMVDYEKRGEHWDMLVRSSPEDWSRNLETVVQWSPYTSEEDLTQQFNFMKDQGTRIVMYNLWEDDEGKLEMDFDSDPHDIQLRGVNR*********KYPNSRHFLTYRHSLRSYASILYLRLPPGFRIILRGQDVEHHNIVNDMMLIKELRYKPTSLPERMAANVTIGFVKDAHYHIDIQGFNVYHKNRLIKPFWRVWNAAGSDGRGAIGVLEANFVEPAHDKQGFERTPVLARLEARLVAIQKEYWCTNCHEVGYAPR*******SSKKESKTSDKDKSNVHQIL********************************************************NLLSKLKEVENKLRELEKKEKVLIDDNASLINIFQEELKRSDAKVERLRERLRVRT******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSFLDNIGELVLNKKRNSNEFENGYLFAKKQKTESFEFGVVSPPEFSNCILAPLPLSFVPLGAEPISSFPSVANDDASKKSEEAEPVLRACKQFWKAGDYEGGNAGDSLSNSVGMDHLRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGFKTSTMRLGADVIVFSRCQGTDGKCSTQSIGMLSYTFLRGTGKEDIVVPMVDYEKRGEHWDMLVRSSPEDWSRNLETVVQWSPYTSEEDLTQQFNFMKDQGTRIVMYNLWEDDEGKLEMDFDSDPHDIQLRGVNREEKNIEMAKKYPNSRHFLTYRHSLRSYASILYLRLPPGFRIILRGQDVEHHNIVNDMMLIKELRYKPTSLPERMAANVTIGFVKDAHYHIDIQGFNVYHKNRLIKPFWRVWNAAGSDGRGAIGVLEANFVEPAHDKQGFERTPVLARLEARLVAIQKEYWCTNCHEVGYAPRRHSKTPVSSKKESKTSDKDKSNVHQILKGGECSSFKMEYISEFDKRLQEESASEDRSCHEASPAIDESQRGPGSHGSSPHGxxxxxxxxxxxxxxxxxxxxxxxxxxxxNASLxxxxxxxxxxxxxxxxxxxxxLRVRTTSIDLH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query662 2.2.26 [Sep-21-2011]
Q8BMD7 928 MORC family CW-type zinc yes no 0.513 0.366 0.348 1e-52
Q8TE76 937 MORC family CW-type zinc yes no 0.578 0.408 0.324 5e-51
Q14149 939 MORC family CW-type zinc no no 0.5 0.352 0.348 1e-49
Q9WVL5 950 MORC family CW-type zinc no no 0.554 0.386 0.252 1e-33
Q9Y6X9 1032 MORC family CW-type zinc no no 0.415 0.266 0.307 9e-33
Q69ZX6 1030 MORC family CW-type zinc no no 0.415 0.266 0.304 9e-32
Q8C5W4 1022 MORC family CW-type zinc no no 0.415 0.269 0.304 1e-31
Q86VD1 984 MORC family CW-type zinc no no 0.370 0.248 0.321 2e-29
>sp|Q8BMD7|MORC4_MOUSE MORC family CW-type zinc finger protein 4 OS=Mus musculus GN=Morc4 PE=2 SV=2 Back     alignment and function desciption
 Score =  208 bits (529), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 131/376 (34%), Positives = 216/376 (57%), Gaps = 36/376 (9%)

Query: 120 VHPKFLHSNATSHKWALGAFAELLDNSLD-EVCNGATYVQVDLLKNKTDGTHMLLVEDNG 178
           + P++L SN++SH     A AELLDN++D +V     ++ V+ +K K      L   D+G
Sbjct: 35  MSPRYLQSNSSSHTRPFSAIAELLDNAVDPDVSARTVFIDVEEVKKKP----CLTFTDDG 90

Query: 179 GGMTPDKMRQCMSLGYSAK--SKLANTIGQYGNGFKTSTMRLGADVIVFSRCQGTDGKCS 236
            GMTP K+ + +S G++ K   K    IG +GNGFK+ +MRLG D +VF++    +G  +
Sbjct: 91  CGMTPHKLHRMLSFGFTDKVIKKSQRPIGVFGNGFKSGSMRLGKDALVFTK----NG--N 144

Query: 237 TQSIGMLSYTFLRGTGKEDIVVPMVDYEKRGEHWDMLVRSSPEDWSRNLETVVQWSPYTS 296
           T ++G+LS T+L     + ++VP+V + ++ +   M+V    ED   +LE ++ +S +  
Sbjct: 145 TLAVGLLSQTYLECIQAQAVIVPIVPFSQQNKK--MIVT---EDSLPSLEAILNYSIFNC 199

Query: 297 EEDLTQQFNFMK-DQGTRIVMYNLWEDDEGKLEMDFDSDPHDIQLRGVNREEKNI-EMAK 354
           E+DL  QF+ +   +GTR++++N+  + +GK E+DFD+D +DI +   + EEK I  +  
Sbjct: 200 EKDLLSQFDAIPGKKGTRVLIWNIRRNKDGKSELDFDTDQYDILVSDFDAEEKEIGGVTS 259

Query: 355 KYPNSRHFLTYRHSLRSYASILYLRLPPGFRIILRGQDVEHHNIVNDMMLIKELRYKPTS 414
           + P +       +SLR++ SILY++  P  +I LR + V    I   +  ++   YKPTS
Sbjct: 260 ELPET------EYSLRAFCSILYMK--PRMKIFLRQKKVTTQMIAKSLANVEYDIYKPTS 311

Query: 415 LPERMAANVTIGFVKDAHYHIDIQGFNVYHKNRLIKPFWRV---WNAAGSDGRGAIGVLE 471
             +++   +T GF     YH    G  +YH NRLIK F +          +G G IGV+E
Sbjct: 312 TNKQV--RITFGF--SCKYHNQF-GVMMYHNNRLIKAFEKAGCQLKPTCGEGVGVIGVIE 366

Query: 472 ANFVEPAHDKQGFERT 487
            NF++PA++KQ FE T
Sbjct: 367 CNFLKPAYNKQDFEYT 382

Mus musculus (taxid: 10090)
>sp|Q8TE76|MORC4_HUMAN MORC family CW-type zinc finger protein 4 OS=Homo sapiens GN=MORC4 PE=1 SV=2 Back     alignment and function description
>sp|Q14149|MORC3_HUMAN MORC family CW-type zinc finger protein 3 OS=Homo sapiens GN=MORC3 PE=1 SV=3 Back     alignment and function description
>sp|Q9WVL5|MORC1_MOUSE MORC family CW-type zinc finger protein 1 OS=Mus musculus GN=Morc1 PE=2 SV=1 Back     alignment and function description
>sp|Q9Y6X9|MORC2_HUMAN MORC family CW-type zinc finger protein 2 OS=Homo sapiens GN=MORC2 PE=1 SV=2 Back     alignment and function description
>sp|Q69ZX6|MOR2A_MOUSE MORC family CW-type zinc finger protein 2A OS=Mus musculus GN=Morc2a PE=1 SV=2 Back     alignment and function description
>sp|Q8C5W4|MOR2B_MOUSE MORC family CW-type zinc finger protein 2B OS=Mus musculus GN=Morc2b PE=2 SV=2 Back     alignment and function description
>sp|Q86VD1|MORC1_HUMAN MORC family CW-type zinc finger protein 1 OS=Homo sapiens GN=MORC1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query662
255540135 816 zinc finger protein, putative [Ricinus c 0.787 0.638 0.667 0.0
297734460 830 unnamed protein product [Vitis vinifera] 0.750 0.598 0.684 0.0
297803624709 hypothetical protein ARALYDRAFT_492340 [ 0.833 0.778 0.623 0.0
356527801 820 PREDICTED: uncharacterized protein LOC10 0.678 0.547 0.728 0.0
42567122707 histidine kinase-like ATPase domain-cont 0.888 0.831 0.580 0.0
356511518 809 PREDICTED: uncharacterized protein LOC10 0.894 0.731 0.560 0.0
449440961 824 PREDICTED: uncharacterized protein LOC10 0.655 0.526 0.737 0.0
449501464 794 PREDICTED: uncharacterized LOC101222073 0.669 0.557 0.724 0.0
359491569 2234 PREDICTED: uncharacterized protein LOC10 0.629 0.186 0.763 0.0
297792383 804 hypothetical protein ARALYDRAFT_495140 [ 0.700 0.577 0.685 0.0
>gi|255540135|ref|XP_002511132.1| zinc finger protein, putative [Ricinus communis] gi|223550247|gb|EEF51734.1| zinc finger protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  761 bits (1965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/550 (66%), Positives = 429/550 (78%), Gaps = 29/550 (5%)

Query: 21  FENGYLFAKKQKTESFEFGVVSPPEFSNCILAPLPLSFVPLGAEPISSFPSVANDDASKK 80
           F NG   +KK++    E GVV            LP+ F+     P++  P+ A     + 
Sbjct: 60  FPNGEGISKKKRKLE-ELGVV------------LPVGFLA----PLNQVPAEAMLTTVQG 102

Query: 81  SEEAEPVLRACKQFWKAGDYEGGNAGDSLSNSVGMDHLRVHPKFLHSNATSHKWALGAFA 140
           ++    + ++CKQFWKAGDYEG   GD   ++ GMDH+RVHPKFLHSNATSHKWALGAFA
Sbjct: 103 NDNVCLIDQSCKQFWKAGDYEGAPCGDWDLSTGGMDHVRVHPKFLHSNATSHKWALGAFA 162

Query: 141 ELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKL 200
           ELLDN+LDEVC GATYV +D+L N  DG+ MLL+EDNGGGM PDKMRQCMSLGYSAKSK+
Sbjct: 163 ELLDNALDEVCYGATYVNIDMLANWKDGSRMLLIEDNGGGMDPDKMRQCMSLGYSAKSKV 222

Query: 201 ANTIGQYGNGFKTSTMRLGADVIVFSRCQGTDGKCSTQSIGMLSYTFLRGTGKEDIVVPM 260
           ANTIGQYGNGFKTSTMRLGADVIVFSRC G DGK  TQSIG+LSYTFLR TGKEDIVVPM
Sbjct: 223 ANTIGQYGNGFKTSTMRLGADVIVFSRCPGKDGKSPTQSIGLLSYTFLRSTGKEDIVVPM 282

Query: 261 VDYEKRGEHWDMLVRSSPEDWSRNLETVVQWSPYTSEEDLTQQFNFMKDQGTRIVMYNLW 320
           +DYE++G+ W+ ++RSS  DW+RN+ET+VQWSP++SE DL +QFN M D GTRIV+YNLW
Sbjct: 283 LDYERKGQEWNKMIRSSSGDWNRNVETIVQWSPFSSEADLLRQFNLMSDHGTRIVIYNLW 342

Query: 321 EDDEGKLEMDFDSDPHDIQLRGVNREEKNIEMAKKYPNSRHFLTYRHSLRSYASILYLRL 380
           EDDEG LE+DFD+DPHDIQLRGVNR+EKNI+MAK++PNSRHFLTYRHSLRSYASILYLRL
Sbjct: 343 EDDEGSLELDFDTDPHDIQLRGVNRDEKNIQMAKEFPNSRHFLTYRHSLRSYASILYLRL 402

Query: 381 PPGFRIILRGQDVEHHNIVNDMMLIKELRYKPTSLP--------ERMAANVTIGFVKDAH 432
           PP FRIILRG+DVEHHNIVNDMML +E+ Y+P S            MAA VTIGFVKDA 
Sbjct: 403 PPCFRIILRGKDVEHHNIVNDMMLSQEITYRPQSADGVAKDFNLNHMAAIVTIGFVKDAK 462

Query: 433 YHIDIQGFNVYHKNRLIKPFWRVWNAAGSDGRGAIGVLEANFVEPAHDKQGFERTPVLAR 492
           +HID+QGFNVYHKNRLIKPFWR+WNAAGSDGRG IGVLEANFVEPAHDKQGFERT VLAR
Sbjct: 463 HHIDVQGFNVYHKNRLIKPFWRLWNAAGSDGRGVIGVLEANFVEPAHDKQGFERTTVLAR 522

Query: 493 LEARLVAIQKEYWCTNCHEVGYAPRRHSKTPVSSKKESKTSD----KDKSNVHQILKGGE 548
           LEARLV +QK YW TNCH++GYAPRR+ +    S     + D      +S  +  L+G  
Sbjct: 523 LEARLVQMQKTYWSTNCHKIGYAPRRNKRFINESTDGGSSPDYSQVSSQSKKYSALRGKG 582

Query: 549 CSSFKMEYIS 558
            SS   ++ S
Sbjct: 583 LSSLSDKFYS 592

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297734460|emb|CBI15707.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297803624|ref|XP_002869696.1| hypothetical protein ARALYDRAFT_492340 [Arabidopsis lyrata subsp. lyrata] gi|297315532|gb|EFH45955.1| hypothetical protein ARALYDRAFT_492340 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356527801|ref|XP_003532495.1| PREDICTED: uncharacterized protein LOC100816702 [Glycine max] Back     alignment and taxonomy information
>gi|42567122|ref|NP_194227.2| histidine kinase-like ATPase domain-containing protein [Arabidopsis thaliana] gi|332659583|gb|AEE84983.1| histidine kinase-like ATPase domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356511518|ref|XP_003524472.1| PREDICTED: uncharacterized protein LOC100786679 [Glycine max] Back     alignment and taxonomy information
>gi|449440961|ref|XP_004138252.1| PREDICTED: uncharacterized protein LOC101222073 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449501464|ref|XP_004161374.1| PREDICTED: uncharacterized LOC101222073 [Cucumis sativus] Back     alignment and taxonomy information
>gi|359491569|ref|XP_002280533.2| PREDICTED: uncharacterized protein LOC100266246 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297792383|ref|XP_002864076.1| hypothetical protein ARALYDRAFT_495140 [Arabidopsis lyrata subsp. lyrata] gi|297309911|gb|EFH40335.1| hypothetical protein ARALYDRAFT_495140 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query662
TAIR|locus:2117358707 AT4G24970 [Arabidopsis thalian 0.777 0.728 0.662 4.4e-191
TAIR|locus:2163320 819 AT5G50780 [Arabidopsis thalian 0.487 0.394 0.736 6.1e-183
TAIR|locus:2179837708 AT5G13130 [Arabidopsis thalian 0.645 0.603 0.681 3.9e-163
TAIR|locus:2122254626 CRH1 "CRT1 Homologue 1" [Arabi 0.631 0.667 0.516 1.9e-113
TAIR|locus:2122264635 CRT1 "compromised recognition 0.632 0.659 0.515 7.6e-112
TAIR|locus:2011226663 DMS11 "DEFECTIVE IN MERISTEM S 0.649 0.648 0.489 1.2e-106
TAIR|locus:2122244486 AT4G36270 "AT4G36270" [Arabido 0.484 0.660 0.447 2.7e-68
ZFIN|ZDB-GENE-030131-1502 1079 morc3a "MORC family CW-type zi 0.558 0.342 0.366 6e-55
ZFIN|ZDB-GENE-060929-544422 zgc:152774 "zgc:152774" [Danio 0.548 0.860 0.353 1.3e-52
RGD|1559905 928 Morc4 "MORC family CW-type zin 0.537 0.383 0.356 7.1e-51
TAIR|locus:2117358 AT4G24970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1836 (651.4 bits), Expect = 4.4e-191, Sum P(2) = 4.4e-191
 Identities = 349/527 (66%), Positives = 413/527 (78%)

Query:     4 LDNIGELVLNKKRNSNEFENGYLFAK---KQKTESFEFGVVSPPEFSNCILAPLPLSFVP 60
             L+ +G   +  KR  + F       +   K+ T   E GV  P  F      P  L+  P
Sbjct:    48 LEKVGNNFVGLKRGRDTFGGSSEVDRNNVKKVTTLAELGVGLPEGFGQSN-PPESLTH-P 105

Query:    61 LGAEPISSFPSVANDDASKKSEEAEPVLRACKQFWKAGDYEGGNAGDSLS-NSVGMDHLR 119
             + A P + F  V        +  +  +   CKQFWKAGDYEG  AGD+   +S G DH+R
Sbjct:   106 IPANPCNVFRPVPPPPPPPYAGTSGKI-GGCKQFWKAGDYEGA-AGDNWDLSSGGFDHVR 163

Query:   120 VHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGG 179
             VHPKFLHSNATSHKWALGAFAELLDN+LDEV +GATYV+VD+L+N   G  MLL+EDNGG
Sbjct:   164 VHPKFLHSNATSHKWALGAFAELLDNALDEVASGATYVKVDMLENNKGGNRMLLIEDNGG 223

Query:   180 GMTPDKMRQCMSLGYSAKSKLANTIGQYGNGFKTSTMRLGADVIVFSRCQGTDGKCSTQS 239
             GM P+KMRQCMSLGYSAKSKLANTIGQYGNGFKTSTMRLGADVIVFSRC G DGK STQS
Sbjct:   224 GMDPEKMRQCMSLGYSAKSKLANTIGQYGNGFKTSTMRLGADVIVFSRCPGKDGKSSTQS 283

Query:   240 IGMLSYTFLRGTGKEDIVVPMVDYEKRGEHWDMLVRSSPEDWSRNLETVVQWSPYTSEED 299
             IG+LSYTFLR TGKEDIVVPM+DYE+R   W  ++RSS  DW +N+ET++QWSP++SEED
Sbjct:   284 IGLLSYTFLRSTGKEDIVVPMLDYERRDPEWSKIIRSSTRDWDKNVETIIQWSPFSSEED 343

Query:   300 LTQQFNFMKDQGTRIVMYNLWEDDEGKLEMDFDSDPHDIQLRGVNREEKNIEMAKKYPNS 359
             L  QF+ MKD+GTRI++YNLWEDD+G LE+DFD+DP+DIQLRGVNREE+NI+MA ++PNS
Sbjct:   344 LLHQFDLMKDRGTRIIIYNLWEDDQGMLELDFDADPYDIQLRGVNREERNIKMASQFPNS 403

Query:   360 RHFLTYRHSLRSYASILYLRLPPGFRIILRGQDVEHHNIVNDMMLIKELRYKPTS----L 415
             RHFLTY+HSLRSY SILYLR+PPGFRIILRG DVEHH++VNDMM  +++ Y+P S    +
Sbjct:   404 RHFLTYKHSLRSYVSILYLRIPPGFRIILRGIDVEHHSVVNDMMQTEQITYRPQSESYGV 463

Query:   416 PERMAANVTIGFVKDAHYHIDIQGFNVYHKNRLIKPFWRVWNAAGSDGRGAIGVLEANFV 475
                M+A V IGFVKDA +H+D+QGFNVYHKNRLIKPFWR+WNA GSDGRG IGVLEANFV
Sbjct:   464 VTNMSAIVIIGFVKDAKHHVDVQGFNVYHKNRLIKPFWRIWNATGSDGRGVIGVLEANFV 523

Query:   476 EPAHDKQGFERTPVLARLEARLVAIQKEYWCTNCHEVGYAPRRHSKT 522
             EPAHDKQGFERT VLARLE+RLV +QK YW TNCH++GYAPRR  K+
Sbjct:   524 EPAHDKQGFERTTVLARLESRLVQMQKTYWSTNCHKIGYAPRRREKS 570
GO:0005524 "ATP binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0016020 "membrane" evidence=IDA
TAIR|locus:2163320 AT5G50780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2179837 AT5G13130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122254 CRH1 "CRT1 Homologue 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122264 CRT1 "compromised recognition of TCV 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011226 DMS11 "DEFECTIVE IN MERISTEM SILENCING 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122244 AT4G36270 "AT4G36270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-1502 morc3a "MORC family CW-type zinc finger 3a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060929-544 zgc:152774 "zgc:152774" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1559905 Morc4 "MORC family CW-type zinc finger 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.7__1773__AT4G24970.1
annotation not avaliable (709 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query662
pfam13589134 pfam13589, HATPase_c_3, Histidine kinase-, DNA gyr 4e-18
pfam02518111 pfam02518, HATPase_c, Histidine kinase-, DNA gyras 3e-05
COG0323638 COG0323, MutL, DNA mismatch repair enzyme (predict 2e-04
cd00075103 cd00075, HATPase_c, Histidine kinase-like ATPases; 3e-04
COG3290537 COG3290, CitA, Signal transduction histidine kinas 3e-04
TIGR00585312 TIGR00585, mutl, DNA mismatch repair protein MutL 9e-04
>gnl|CDD|222246 pfam13589, HATPase_c_3, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Back     alignment and domain information 
 Score = 80.8 bits (200), Expect = 4e-18
 Identities = 38/128 (29%), Positives = 68/128 (53%), Gaps = 13/128 (10%)

Query: 137 GAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSA 196
            A AEL+DNS+D     AT V++ +  +   G   + +EDNGGGM+ +++R  + LG S+
Sbjct: 5   DAIAELIDNSIDA---DATNVKISI--DPDRGEDGISIEDNGGGMSYEELRNALKLGRSS 59

Query: 197 K--SKLANTIGQYGNGFKTSTMRLGADVIVFSRCQGTDGKCSTQSIGMLSYTFLRGTGKE 254
           K   + + T+G+ G G K +++ LG  + V S+    +G+ ST ++       +   G+ 
Sbjct: 60  KEGERDSTTLGRKGIGMKLASLSLGRKLTVTSK---KEGESSTLTL---DLDDIDKEGEW 113

Query: 255 DIVVPMVD 262
           D+      
Sbjct: 114 DLPELTSA 121

This family represents, additionally, the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90. Length = 134
>gnl|CDD|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Back     alignment and domain information
>gnl|CDD|223400 COG0323, MutL, DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>gnl|CDD|225827 COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|233035 TIGR00585, mutl, DNA mismatch repair protein MutL Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 662
KOG1845775 consensus MORC family ATPases [Cell cycle control, 100.0
KOG1845 775 consensus MORC family ATPases [Cell cycle control, 99.94
PRK05218 613 heat shock protein 90; Provisional 99.72
PF13589137 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and 99.65
PRK14083601 HSP90 family protein; Provisional 99.62
PTZ00130 814 heat shock protein 90; Provisional 99.58
COG0326623 HtpG Molecular chaperone, HSP90 family [Posttransl 99.48
PTZ00272 701 heat shock protein 83 kDa (Hsp83); Provisional 99.42
COG0323638 MutL DNA mismatch repair enzyme (predicted ATPase) 99.35
PRK00095617 mutL DNA mismatch repair protein; Reviewed 99.24
TIGR00585312 mutl DNA mismatch repair protein MutL. All protein 99.23
PF0749650 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zi 99.11
KOG1979 694 consensus DNA mismatch repair protein - MLH1 famil 99.07
COG1389538 DNA topoisomerase VI, subunit B [DNA replication, 99.04
COG3290537 CitA Signal transduction histidine kinase regulati 98.59
PRK14868 795 DNA topoisomerase VI subunit B; Provisional 98.57
KOG1978 672 consensus DNA mismatch repair protein - MLH2/PMS1/ 98.55
KOG0019656 consensus Molecular chaperone (HSP90 family) [Post 98.55
PF02518111 HATPase_c: Histidine kinase-, DNA gyrase B-, and H 98.51
TIGR01052488 top6b DNA topoisomerase VI, B subunit. This model 98.45
PRK04184535 DNA topoisomerase VI subunit B; Validated 98.42
PRK05559631 DNA topoisomerase IV subunit B; Reviewed 98.37
KOG0020 785 consensus Endoplasmic reticulum glucose-regulated 98.33
TIGR01055625 parE_Gneg DNA topoisomerase IV, B subunit, proteob 98.22
PRK14867659 DNA topoisomerase VI subunit B; Provisional 98.12
PRK05644638 gyrB DNA gyrase subunit B; Validated 98.12
TIGR01059654 gyrB DNA gyrase, B subunit. This model describes t 97.99
smart00433594 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras 97.97
PRK14939 756 gyrB DNA gyrase subunit B; Provisional 97.93
PRK10604433 sensor protein RstB; Provisional 97.92
PRK10364457 sensor protein ZraS; Provisional 97.87
PRK09303380 adaptive-response sensory kinase; Validated 97.81
PRK11006430 phoR phosphate regulon sensor protein; Provisional 97.75
TIGR02938494 nifL_nitrog nitrogen fixation negative regulator N 97.74
PRK09470461 cpxA two-component sensor protein; Provisional 97.72
PRK15053545 dpiB sensor histidine kinase DpiB; Provisional 97.69
cd00075103 HATPase_c Histidine kinase-like ATPases; This fami 97.69
TIGR01386457 cztS_silS_copS heavy metal sensor kinase. Members 97.67
PRK11086542 sensory histidine kinase DcuS; Provisional 97.66
PRK10549466 signal transduction histidine-protein kinase BaeS; 97.62
COG0642336 BaeS Signal transduction histidine kinase [Signal 97.59
smart00387111 HATPase_c Histidine kinase-like ATPases. Histidine 97.57
PRK10755356 sensor protein BasS/PmrB; Provisional 97.55
PRK09467435 envZ osmolarity sensor protein; Provisional 97.53
TIGR03785703 marine_sort_HK proteobacterial dedicated sortase s 97.52
TIGR02966333 phoR_proteo phosphate regulon sensor kinase PhoR. 97.48
PRK11073348 glnL nitrogen regulation protein NR(II); Provision 97.45
COG0187635 GyrB Type IIA topoisomerase (DNA gyrase/topo II, t 97.41
PRK11100475 sensory histidine kinase CreC; Provisional 97.4
PRK13837828 two-component VirA-like sensor kinase; Provisional 97.4
PRK11360607 sensory histidine kinase AtoS; Provisional 97.39
PRK11091779 aerobic respiration control sensor protein ArcB; P 97.35
PRK10815485 sensor protein PhoQ; Provisional 97.34
PRK15347921 two component system sensor kinase SsrA; Provision 97.33
PRK09835482 sensor kinase CusS; Provisional 97.33
TIGR02916679 PEP_his_kin putative PEP-CTERM system histidine ki 97.28
COG4191603 Signal transduction histidine kinase regulating C4 97.28
PRK10547670 chemotaxis protein CheA; Provisional 97.26
TIGR01058637 parE_Gpos DNA topoisomerase IV, B subunit, Gram-po 97.25
PRK11107919 hybrid sensory histidine kinase BarA; Provisional 97.24
PRK10618894 phosphotransfer intermediate protein in two-compon 97.22
PRK11466914 hybrid sensory histidine kinase TorS; Provisional 97.16
TIGR02956968 TMAO_torS TMAO reductase sytem sensor TorS. This p 97.12
KOG1977 1142 consensus DNA mismatch repair protein - MLH3 famil 97.09
PRK10841924 hybrid sensory kinase in two-component regulatory 97.09
PRK10337449 sensor protein QseC; Provisional 97.03
PRK13557540 histidine kinase; Provisional 96.9
PTZ00109 903 DNA gyrase subunit b; Provisional 96.89
PRK10490895 sensor protein KdpD; Provisional 96.84
PRK099591197 hybrid sensory histidine kinase in two-component r 96.72
COG2205890 KdpD Osmosensitive K+ channel histidine kinase [Si 96.68
COG4585365 Signal transduction histidine kinase [Signal trans 96.51
COG0643716 CheA Chemotaxis protein histidine kinase and relat 96.44
PRK11644495 sensory histidine kinase UhpB; Provisional 96.35
PLN03237 1465 DNA topoisomerase 2; Provisional 96.23
PRK13560807 hypothetical protein; Provisional 96.22
PHA02569602 39 DNA topoisomerase II large subunit; Provisional 96.17
PLN03128 1135 DNA topoisomerase 2; Provisional 96.12
PTZ00108 1388 DNA topoisomerase 2-like protein; Provisional 96.12
PRK10600569 nitrate/nitrite sensor protein NarX; Provisional 96.07
TIGR01925137 spIIAB anti-sigma F factor. This model describes t 96.01
PF13581125 HATPase_c_2: Histidine kinase-like ATPase domain 95.69
KOG0787414 consensus Dehydrogenase kinase [Signal transductio 95.6
COG5000712 NtrY Signal transduction histidine kinase involved 95.56
PRK03660146 anti-sigma F factor; Provisional 95.43
TIGR01924159 rsbW_low_gc serine-protein kinase RsbW. This model 95.4
PRK04069161 serine-protein kinase RsbW; Provisional 95.35
COG3850574 NarQ Signal transduction histidine kinase, nitrate 95.19
COG4251750 Bacteriophytochrome (light-regulated signal transd 94.11
COG4192673 Signal transduction histidine kinase regulating ph 93.89
COG2972456 Predicted signal transduction protein with a C-ter 93.65
PRK10935565 nitrate/nitrite sensor protein NarQ; Provisional 93.48
PRK13559361 hypothetical protein; Provisional 92.81
COG2172146 RsbW Anti-sigma regulatory factor (Ser/Thr protein 91.74
COG3852363 NtrB Signal transduction histidine kinase, nitroge 91.17
COG5002459 VicK Signal transduction histidine kinase [Signal 91.08
COG3920221 Signal transduction histidine kinase [Signal trans 89.55
COG3851497 UhpB Signal transduction histidine kinase, glucose 89.53
PF14501100 HATPase_c_5: GHKL domain 84.36
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=5e-61  Score=544.76  Aligned_cols=412  Identities=52%  Similarity=0.828  Sum_probs=376.0

Q ss_pred             chhhhhhhhhhcccCCCCCCCCCCccCcccceeeeeChhhhhhhhccchhHHHHHHHHhccchhhhhcCCceEEEEEEec
Q 045475           85 EPVLRACKQFWKAGDYEGGNAGDSLSNSVGMDHLRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYVQVDLLKN  164 (662)
Q Consensus        85 ~~~~~~~~~fw~ag~~~~~~~~~~~~~~~~~~~~~~~p~fL~s~stsh~~pf~AIaELVDNAiDA~~agAt~V~I~i~~~  164 (662)
                      ++.+..||||||||+|..++.+...+..+|..|+.+||+|||+|+|+|+|.++|++||||||+|.+.++|+.+.|+....
T Consensus        97 ~l~~~~c~sfwKag~~~~a~~~~~~~~~G~~~~iivhpkflhsnatshk~a~~a~aeLldnalDEi~~~~tf~~vd~I~p  176 (775)
T KOG1845|consen   97 SLEAIYCRSFWKAGDYLLAELDVIIGKSGGTLHIIVHPKFLHSNATSHKWAKGAIAELLDNALDEITNGATFVRVDYINP  176 (775)
T ss_pred             ccchhhhcCcccccchhcccccceeccCCceeEEEEehhhhcCCCcccccccChhhhhccccccccccccceEEeeeecc
Confidence            55689999999999999999999999999999999999999999999999999999999999999999999988876654


Q ss_pred             CCCC-eeEEEEE-----ECCCCCCHHHHHhhhhccccccccCCCccCcccccccccccccCCEEEEEeeeCCCCCceeee
Q 045475          165 KTDG-THMLLVE-----DNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGFKTSTMRLGADVIVFSRCQGTDGKCSTQ  238 (662)
Q Consensus       165 ~~~g-~~~L~I~-----DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g~~G~~~t~  238 (662)
                      ..+. ...++|.     |||+||.++.+..+|.+|++.|..-..++|+||+|||++.|++|++++|++|..+..|...++
T Consensus       177 ~~d~~i~a~~v~~~~~s~~gg~~~~~~i~~~m~l~~~~k~e~~~tv~q~~~gfktst~rlGa~~i~~~R~~~~~~~kstq  256 (775)
T KOG1845|consen  177 VMDIFIRALVVQLKRISDDGGGMKPEVIRKCMSLGYSSKKEANSTVGQYGNGFKTSTMRLGADAIVFSRCESRRGLKSTQ  256 (775)
T ss_pred             cccccceeEEeeccceeccccccCHHHHHHHHHhhhhhhhhhhhhhhhhccccccchhhhccceeEeehhhhhccCCcce
Confidence            4444 4556666     779999999999999999999875567899999999999999999999999987777888999


Q ss_pred             eeccceeeeecCCCCcceEEec----cccccccccccccccCCchhhhhhhhh-----hhhcCCCCChHHHHHH------
Q 045475          239 SIGMLSYTFLRGTGKEDIVVPM----VDYEKRGEHWDMLVRSSPEDWSRNLET-----VVQWSPYTSEEDLTQQ------  303 (662)
Q Consensus       239 siglLS~Tfl~~~~~~dI~VPi----l~~~~~~~~~~~~~~~~~~dw~~~l~~-----Il~ySpf~se~eLl~q------  303 (662)
                      ++|+||++||+.++.++++||+    .+++...+.|..+.+.+..+|..++.+     +++|+||.++.+++.|      
T Consensus       257 siglls~tfL~~t~~~d~iv~~~~i~~~~e~~~~~~~~i~~~s~~~~~~n~~i~~~~~~L~w~p~~~~~~~l~q~~v~~~  336 (775)
T KOG1845|consen  257 SIGLLSYTFLRKTGKRDFIVPMRLIKMDYEKSDQLWQGILYKSGVDWAVNLEIEVTERFLKWSPYSHLLDLLGQNSVQYS  336 (775)
T ss_pred             eEEEEEEeeeccccCCceeEecchhhhhhhcccccccceeeccccccceeeeeHHHHHHhhcCccccHHHHhhhhhhhhc
Confidence            9999999999999999999999    999988899999888888999999888     9999999999999988      


Q ss_pred             ---------hcccCCCceEEEEecc--ccccCCcccccCCCCcccccccccchhhhhHHhhhcCCCCchhhhhHHHHHHH
Q 045475          304 ---------FNFMKDQGTRIVMYNL--WEDDEGKLEMDFDSDPHDIQLRGVNREEKNIEMAKKYPNSRHFLTYRHSLRSY  372 (662)
Q Consensus       304 ---------fd~I~~~GT~III~nL--w~~~dg~~Eldf~td~~DI~i~~~~~~~k~~q~a~~~p~~~~~~~~~~SLRaY  372 (662)
                               |+.+.++||.||+||+  |..+.|.+|+||+.++++|..                       .+.++++.|
T Consensus       337 ~~~~ef~~~~~~~~~~g~~~I~Y~~~~~~~~~g~~e~df~l~~~~i~~-----------------------~~~~~~~s~  393 (775)
T KOG1845|consen  337 KDFPEFGHQFNIMNKPGTDVIIYNLRRWKGDEGILELDFDLDPHVIPW-----------------------TYCHSHLSE  393 (775)
T ss_pred             cccchhcchhhhccCCCceeeeechhhhcccccceeeccccCcccccc-----------------------cchhhhhhc
Confidence                     8888999999999999  999999999999999887761                       245789999


Q ss_pred             HHHhhhcCCCceEEEEcCeeecccccccccccccceeecccCCC-C----cceEEEEeeccccccccccccceEEEEcCc
Q 045475          373 ASILYLRLPPGFRIILRGQDVEHHNIVNDMMLIKELRYKPTSLP-E----RMAANVTIGFVKDAHYHIDIQGFNVYHKNR  447 (662)
Q Consensus       373 lSiLYLr~pp~fkI~LnG~~V~~~~i~~~L~~~e~i~ykP~~~p-~----~~~v~it~Gf~~~~~~~~~~qGf~VY~nnR  447 (662)
                      .++||..++++|++++.|+++.++.+.+..+..+...|+|+..+ .    .+......||.+.++++.+.+|++|||++|
T Consensus       394 ~sil~~~~~~~~~~v~~~~~~~h~sv~~~q~~~~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~~~  473 (775)
T KOG1845|consen  394 ASILLLTRRLRFKSVLRGKDVEHHSVINYQVQTEEILYQPQRAPADGKQRLIKLSPKPGFVKDAPRPIDVQQFNVSHGPR  473 (775)
T ss_pred             ccccchhccccchhccccccchhhhHHHHHHHHHHHhcccccccCCccchhhcccCCCCcccccCCCCCccCCccccCCc
Confidence            99999999999999999999999999999999988999998876 2    233444678888888999999999999999


Q ss_pred             ccc----ccccccccCCCCCceeEEEEecCccCCCCCcccccccHHHHHHHHHHHHHHHHHHhhccccccccccCC
Q 045475          448 LIK----PFWRVWNAAGSDGRGAIGVLEANFVEPAHDKQGFERTPVLARLEARLVAIQKEYWCTNCHEVGYAPRRH  519 (662)
Q Consensus       448 LI~----~fekVg~~~~s~grGVIGVleanfLePthnKQdFe~t~~y~~L~~~L~e~l~eYW~~~~~~igy~~~~~  519 (662)
                      ||.    ++||.++..++.++++++++.+||.+++|++|||+.+....+.+.++.++++.||...|++++|+....
T Consensus       474 lie~~~~~~~k~~n~~~s~~~~~~~il~~n~~~~a~~~~~v~~~~v~a~~es~~~~~~~~~~~~~~~~i~~~~~q~  549 (775)
T KOG1845|consen  474 LIEHGCRPFVKIDNATGSLGQAVIPILVGNFVETAPDSQGVEKTIVLASSESRDKQSLNTYEEKKCLRIDEAGRQL  549 (775)
T ss_pred             chhhcccceeeecCCCccccccccceecccccccCCCccccccccccccchhhhhhcccccccccccccCccchhh
Confidence            999    999999999999999999999999999999999999999999999999999999999999999988753

>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK05218 heat shock protein 90; Provisional Back     alignment and domain information
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B Back     alignment and domain information
>PRK14083 HSP90 family protein; Provisional Back     alignment and domain information
>PTZ00130 heat shock protein 90; Provisional Back     alignment and domain information
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional Back     alignment and domain information
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK00095 mutL DNA mismatch repair protein; Reviewed Back     alignment and domain information
>TIGR00585 mutl DNA mismatch repair protein MutL Back     alignment and domain information
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair] Back     alignment and domain information
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] Back     alignment and domain information
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] Back     alignment and domain information
>PRK14868 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair] Back     alignment and domain information
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>TIGR01052 top6b DNA topoisomerase VI, B subunit Back     alignment and domain information
>PRK04184 DNA topoisomerase VI subunit B; Validated Back     alignment and domain information
>PRK05559 DNA topoisomerase IV subunit B; Reviewed Back     alignment and domain information
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial Back     alignment and domain information
>PRK14867 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>PRK05644 gyrB DNA gyrase subunit B; Validated Back     alignment and domain information
>TIGR01059 gyrB DNA gyrase, B subunit Back     alignment and domain information
>smart00433 TOP2c TopoisomeraseII Back     alignment and domain information
>PRK14939 gyrB DNA gyrase subunit B; Provisional Back     alignment and domain information
>PRK10604 sensor protein RstB; Provisional Back     alignment and domain information
>PRK10364 sensor protein ZraS; Provisional Back     alignment and domain information
>PRK09303 adaptive-response sensory kinase; Validated Back     alignment and domain information
>PRK11006 phoR phosphate regulon sensor protein; Provisional Back     alignment and domain information
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL Back     alignment and domain information
>PRK09470 cpxA two-component sensor protein; Provisional Back     alignment and domain information
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional Back     alignment and domain information
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>TIGR01386 cztS_silS_copS heavy metal sensor kinase Back     alignment and domain information
>PRK11086 sensory histidine kinase DcuS; Provisional Back     alignment and domain information
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional Back     alignment and domain information
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>smart00387 HATPase_c Histidine kinase-like ATPases Back     alignment and domain information
>PRK10755 sensor protein BasS/PmrB; Provisional Back     alignment and domain information
>PRK09467 envZ osmolarity sensor protein; Provisional Back     alignment and domain information
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase Back     alignment and domain information
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR Back     alignment and domain information
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional Back     alignment and domain information
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK11100 sensory histidine kinase CreC; Provisional Back     alignment and domain information
>PRK13837 two-component VirA-like sensor kinase; Provisional Back     alignment and domain information
>PRK11360 sensory histidine kinase AtoS; Provisional Back     alignment and domain information
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information
>PRK10815 sensor protein PhoQ; Provisional Back     alignment and domain information
>PRK15347 two component system sensor kinase SsrA; Provisional Back     alignment and domain information
>PRK09835 sensor kinase CusS; Provisional Back     alignment and domain information
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase Back     alignment and domain information
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] Back     alignment and domain information
>PRK10547 chemotaxis protein CheA; Provisional Back     alignment and domain information
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive Back     alignment and domain information
>PRK11107 hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional Back     alignment and domain information
>PRK11466 hybrid sensory histidine kinase TorS; Provisional Back     alignment and domain information
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS Back     alignment and domain information
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair] Back     alignment and domain information
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Back     alignment and domain information
>PRK10337 sensor protein QseC; Provisional Back     alignment and domain information
>PRK13557 histidine kinase; Provisional Back     alignment and domain information
>PTZ00109 DNA gyrase subunit b; Provisional Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms] Back     alignment and domain information
>PRK11644 sensory histidine kinase UhpB; Provisional Back     alignment and domain information
>PLN03237 DNA topoisomerase 2; Provisional Back     alignment and domain information
>PRK13560 hypothetical protein; Provisional Back     alignment and domain information
>PHA02569 39 DNA topoisomerase II large subunit; Provisional Back     alignment and domain information
>PLN03128 DNA topoisomerase 2; Provisional Back     alignment and domain information
>PTZ00108 DNA topoisomerase 2-like protein; Provisional Back     alignment and domain information
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional Back     alignment and domain information
>TIGR01925 spIIAB anti-sigma F factor Back     alignment and domain information
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain Back     alignment and domain information
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] Back     alignment and domain information
>PRK03660 anti-sigma F factor; Provisional Back     alignment and domain information
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW Back     alignment and domain information
>PRK04069 serine-protein kinase RsbW; Provisional Back     alignment and domain information
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] Back     alignment and domain information
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] Back     alignment and domain information
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] Back     alignment and domain information
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms] Back     alignment and domain information
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional Back     alignment and domain information
>PRK13559 hypothetical protein; Provisional Back     alignment and domain information
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms] Back     alignment and domain information
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] Back     alignment and domain information
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms] Back     alignment and domain information
>PF14501 HATPase_c_5: GHKL domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query662
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
2zbk_B530 Type 2 DNA topoisomerase 6 subunit B; DNA binding 3e-04
2q2e_B621 Type 2 DNA topoisomerase 6 subunit B; DNA-binding, 8e-04
1b63_A333 MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A 8e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 44.5 bits (104), Expect = 1e-04
 Identities = 66/452 (14%), Positives = 140/452 (30%), Gaps = 95/452 (21%)

Query: 241 GMLSYTFLRGTGKEDIVVPMVDYEKR------GEHW-DMLVRSSPEDWSRNLETVVQWSP 293
           G+L      G+GK  + + +    K          W ++   +SPE     L+ ++    
Sbjct: 157 GVL------GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL---- 206

Query: 294 YTSEEDLTQQFNFMKDQGTRIVMYNLWEDDEGKLEMDFDSDPHD---IQLRGVNREEKNI 350
           Y  + + T + +   +   RI         + +L     S P++   + L  V    +N 
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRI------HSIQAELRRLLKSKPYENCLLVLLNV----QNA 256

Query: 351 EMAKKY-PNSRHFLTYRHSLRSYASILYLRLPPGFRIILRGQDVEHHNIVNDMMLIKELR 409
           +    +  + +  LT R   +     L         +      +    + +  +L+K L 
Sbjct: 257 KAWNAFNLSCKILLTTRF--KQVTDFLSAATTTHISLDHHSMTLTPDEVKS--LLLKYLD 312

Query: 410 YKPTSLPERMAANV-----TIG-FVKDAHYHIDIQGFNVYHKNRLIKPFWRVWNAAGSDG 463
            +P  LP  +          I   ++D                      W  W     D 
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRD-------------GLAT-----WDNWKHVNCDK 354

Query: 464 RGAIGVLEA--NFVEPAHDKQGFER-----------TPVLARLEARLVAIQKEYWCTNCH 510
              I  +E+  N +EPA  ++ F+R           T +L+ +   ++           H
Sbjct: 355 LTTI--IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412

Query: 511 EVGYAPRRHSKTPVSS----KKESKTSDKDKSNVHQIL-------KGGECSSFKME---- 555
           +      +  K    S      E K   +++  +H+ +       K  +           
Sbjct: 413 KYSLV-EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471

Query: 556 YISEF-----DKRLQEESASEDRSCHEASPAIDESQRGPGSHGSSPHGTRNLLSKLKEVE 610
           Y               E  +  R        +++  R   +  ++     N L +LK  +
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK 531

Query: 611 NKLRELEKKEKVLIDDNASLINIFQEELKRSD 642
             + + + K + L++     +   +E L  S 
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICSK 563
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Length = 530 Back     alignment and structure
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Length = 621 Back     alignment and structure
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* Length = 333 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query662
1y4s_A559 Chaperone protein HTPG; HSP90, molecular chaperone 99.67
1b63_A333 MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A 99.61
2ioq_A624 Chaperone protein HTPG; heat shock protein, HSP90; 99.61
2o1u_A666 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 99.6
2cg9_A 677 ATP-dependent molecular chaperone HSP82; chaperone 99.59
3t0h_A228 Heat shock protein HSP 90-alpha; chaperone, ATPase 99.51
3na3_A348 DNA mismatch repair protein MLH1; MUTL protein hom 99.49
3h4l_A367 DNA mismatch repair protein PMS1; ATP binding, DNA 99.46
2gqp_A236 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 99.46
2wer_A220 ATP-dependent molecular chaperone HSP82; ATPase, A 99.45
3peh_A281 Endoplasmin homolog; structural genomics, structur 99.45
1yc1_A264 HSP 86, heat shock protein HSP 90-alpha; cell-cycl 99.44
1qy5_A269 Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N 99.44
3nmq_A239 Heat shock protein HSP 90-beta; ATPase, chaperone- 99.43
3o0i_A256 HSP90AA1 protein; HSP90 heat-shock proteins, chape 99.43
2ior_A235 Chaperone protein HTPG; heat shock protein, HSP90; 99.4
3ied_A272 Heat shock protein; HSP90, chaperone, structural g 99.25
1h7s_A365 PMS1 protein homolog 2; DNA repair, GHL ATPase, mi 99.17
2e61_A69 Zinc finger CW-type PWWP domain protein 1; ZF-CW d 99.02
2l7p_A100 Histone-lysine N-methyltransferase ASHH2; CW-domai 98.99
4duh_A220 DNA gyrase subunit B; structure-based drug design, 98.8
3fv5_A201 DNA topoisomerase 4 subunit B; topoisomerase IV B 98.76
1ei1_A391 DNA gyrase B, GYRB; ATPase domain, dimer, isomeras 98.54
1s16_A390 Topoisomerase IV subunit B; two-domain protein com 98.5
1mu5_A471 Type II DNA topoisomerase VI subunit B; GHKL ATPas 98.33
4emv_A226 DNA topoisomerase IV, B subunit; protein-inhibitor 98.31
3cwv_A369 DNA gyrase, B subunit, truncated; structural genom 98.28
1zxm_A400 TOPO IIA ATPase, DNA topoisomerase II, alpha isozy 98.27
2zbk_B530 Type 2 DNA topoisomerase 6 subunit B; DNA binding 98.23
2c2a_A258 Sensor histidine kinase; phosphotransfer, PHOQ, se 98.2
1kij_A390 DNA gyrase subunit B; topoisomerase, gyrase B-coum 98.17
2btz_A394 Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo 98.13
1id0_A152 PHOQ histidine kinase; PHOQ/PHOP, signal transduct 98.12
3lnu_A408 Topoisomerase IV subunit B; PARE, ATP-binding, nuc 98.12
2q8g_A407 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 98.11
2e0a_A394 Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP 98.08
1i58_A189 Chemotaxis protein CHEA; beta-alpha sandwich, sign 98.08
1ysr_A150 Sensor-type histidine kinase PRRB; ATP-binding dom 98.07
3sl2_A177 Sensor histidine kinase YYCG; ATP binding, intact 98.06
1y8o_A419 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 98.04
1bxd_A161 ENVZ(290-450), protein (osmolarity sensor protein 98.01
1r62_A160 Nitrogen regulation protein NR(II); PII, histidine 98.0
4ew8_A268 Sensor protein DIVL; signal transduction, two-comp 97.98
3d36_A244 Sporulation kinase B; GHKL ATPase, four helix bund 97.98
3a0y_A152 Sensor protein; ATP-LID, kinase, phosphoprotein, t 97.97
1gkz_A388 [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] 97.97
2q2e_B621 Type 2 DNA topoisomerase 6 subunit B; DNA-binding, 97.89
1b3q_A379 Protein (chemotaxis protein CHEA); histine kinase, 97.88
3ehg_A128 Sensor kinase (YOCF protein); GHL ATPase domain, t 97.81
3jz3_A222 Sensor protein QSEC; helix-turn-helix, kinase doma 97.77
1pvg_A418 DNA topoisomerase II; GHKL ATPase domain; HET: DNA 97.77
3ehh_A218 Sensor kinase (YOCF protein); four-helix bundle, G 97.68
3a0r_A349 Sensor protein; four helix bundle, PAS fold, kinas 97.65
1th8_A145 Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-s 97.64
3zxo_A129 Redox sensor histidine kinase response regulator; 97.6
3ttz_A198 DNA gyrase subunit B; protein-inhibitor complex, A 97.57
3zxq_A124 Hypoxia sensor histidine kinase response regulato; 97.43
4fpp_A247 Phosphotransferase; four helix bundle, bergerat fo 97.0
4gfh_A 1177 DNA topoisomerase 2; topoisomerase, protein-DNA co 96.37
1ixm_A192 SPO0B, protein (sporulation response regulatory pr 95.11
3ke6_A399 Protein RV1364C/MT1410; anti-sigma factor, anti-si 90.76
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A Back     alignment and structure
Probab=99.67  E-value=1e-15  Score=171.88  Aligned_cols=111  Identities=28%  Similarity=0.367  Sum_probs=81.8

Q ss_pred             eeeeChh-hhhhhhcc-chhHHHHHHHHhccchhhhh-------------cCCceEEEEEEecCCCCeeEEEEEECCCCC
Q 045475          117 HLRVHPK-FLHSNATS-HKWALGAFAELLDNSLDEVC-------------NGATYVQVDLLKNKTDGTHMLLVEDNGGGM  181 (662)
Q Consensus       117 ~~~~~p~-fL~s~sts-h~~pf~AIaELVDNAiDA~~-------------agAt~V~I~i~~~~~~g~~~L~I~DNG~GM  181 (662)
                      .+++..+ .|+-++.+ |+.+..+|.|||.||+||..             ..++.+.|+|..++  +...|+|.|||.||
T Consensus         8 ~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~--~~~~I~I~DnGiGM   85 (559)
T 1y4s_A            8 GFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDK--DKRTLTISDNGVGM   85 (559)
T ss_dssp             ECCTTHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEET--TTTEEEEEECSSCC
T ss_pred             eeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeC--CCcEEEEEECCCCC
Confidence            3555553 45655533 77888999999999999962             12444455555443  34689999999999


Q ss_pred             CHHHHHhhh-hccccccc-----------cCCCccCcccccccccccccCCEEEEEeeeCC
Q 045475          182 TPDKMRQCM-SLGYSAKS-----------KLANTIGQYGNGFKTSTMRLGADVIVFSRCQG  230 (662)
Q Consensus       182 ~~eel~~~~-~~G~S~K~-----------~~~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g  230 (662)
                      +.+++..++ .+|+|.+.           .+...||+||+||.+ ++.++.+++|.|++.+
T Consensus        86 t~edl~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS-~f~VadkV~V~Sr~~~  145 (559)
T 1y4s_A           86 TRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYS-AFIVADKVTVRTRAAG  145 (559)
T ss_dssp             CHHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGG-HHHHEEEEEEEEECSS
T ss_pred             CHHHHHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhh-hhhccCeEEEEEcCCC
Confidence            999998765 58888753           134689999999976 5558999999999876
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* Back     alignment and structure
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A Back     alignment and structure
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A Back     alignment and structure
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Back     alignment and structure
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ... Back     alignment and structure
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} Back     alignment and structure
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A* Back     alignment and structure
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A Back     alignment and structure
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* Back     alignment and structure
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* Back     alignment and structure
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* Back     alignment and structure
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1 Back     alignment and structure
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A* Back     alignment and structure
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} Back     alignment and structure
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum} Back     alignment and structure
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* Back     alignment and structure
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A* Back     alignment and structure
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana} Back     alignment and structure
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A* Back     alignment and structure
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* Back     alignment and structure
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Back     alignment and structure
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A* Back     alignment and structure
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus} Back     alignment and structure
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* Back     alignment and structure
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Back     alignment and structure
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* Back     alignment and structure
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* Back     alignment and structure
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A Back     alignment and structure
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A* Back     alignment and structure
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A Back     alignment and structure
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* Back     alignment and structure
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A* Back     alignment and structure
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A Back     alignment and structure
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} Back     alignment and structure
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* Back     alignment and structure
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 Back     alignment and structure
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3 Back     alignment and structure
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} Back     alignment and structure
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} Back     alignment and structure
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A Back     alignment and structure
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* Back     alignment and structure
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Back     alignment and structure
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A Back     alignment and structure
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis} Back     alignment and structure
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} Back     alignment and structure
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* Back     alignment and structure
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A* Back     alignment and structure
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} Back     alignment and structure
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* Back     alignment and structure
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A* Back     alignment and structure
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A Back     alignment and structure
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae} Back     alignment and structure
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A Back     alignment and structure
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 662
d1b63a2218 d.122.1.2 (A:-2-216) DNA mismatch repair protein M 1e-05
d1h7sa2203 d.122.1.2 (A:29-231) DNA mismatch repair protein P 2e-04
>d1b63a2 d.122.1.2 (A:-2-216) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]} Length = 218 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: DNA gyrase/MutL, N-terminal domain
domain: DNA mismatch repair protein MutL
species: Escherichia coli [TaxId: 562]

 Score = 44.3 bits (104), Expect = 1e-05
 Identities = 20/100 (20%), Positives = 44/100 (44%), Gaps = 10/100 (10%)

Query: 138 AFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAK 197
              EL++NSLD    GAT + +D+   +  G  ++ + DNG G+  D++   ++   ++K
Sbjct: 28  VVKELVENSLDA---GATRIDIDI---ERGGAKLIRIRDNGCGIKKDELALALARHATSK 81

Query: 198 SKLANTIGQY----GNGFKTSTMRLGADVIVFSRCQGTDG 233
               + +         G   +++   + + + SR      
Sbjct: 82  IASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQE 121
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Length = 203 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query662
d2iwxa1213 HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T 99.44
d1b63a2218 DNA mismatch repair protein MutL {Escherichia coli 99.42
d1uyla_208 HSP90 {Human (Homo sapiens) [TaxId: 9606]} 99.38
d1h7sa2203 DNA mismatch repair protein PMS2 {Human (Homo sapi 99.35
d2gqpa1227 HSP90 {Dog (Canis familiaris) [TaxId: 9615]} 99.31
d2hkja3219 Topoisomerase VI-B subunit {Archaeon Sulfolobus sh 99.09
d2c2aa2161 Sensor histidine kinase TM0853 {Thermotoga maritim 98.49
d1ysra1148 Sensor-type histidine kinase PrrB {Mycobacterium t 98.42
d1id0a_146 Histidine kinase PhoQ domain {Escherichia coli [Ta 98.38
d1bxda_161 Histidine kinase domain of the osmosensor EnvZ {Es 98.35
d1gkza2193 Branched-chain alpha-ketoacid dehydrogenase kinase 98.34
d1ei1a2219 DNA gyrase B {Escherichia coli [TaxId: 562]} 98.33
d1jm6a2190 Pyruvate dehydrogenase kinase {Rat (Rattus norvegi 98.21
d1r62a_156 Nitrogen regulation protein NtrB, C-terminal domai 97.96
d1ixma_179 Sporulation response regulatory protein Spo0B {Bac 97.86
d1y8oa2125 Pyruvate dehydrogenase kinase {Human (Homo sapiens 97.63
d1kija2212 DNA gyrase B {Thermus thermophilus [TaxId: 274]} 97.6
d1pvga2239 DNA topoisomerase II {Baker's yeast (Saccharomyces 97.44
d1s14a_168 Topoisomerase IV subunit B {Escherichia coli [TaxI 97.29
d1th8a_139 Anti-sigma factor spoIIab {Bacillus stearothermoph 97.13
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Heat shock protein 90, HSP90, N-terminal domain
domain: HSP90
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.44  E-value=4e-14  Score=139.19  Aligned_cols=107  Identities=19%  Similarity=0.272  Sum_probs=81.2

Q ss_pred             hhhhhhhcc-chhHHHHHHHHhccchhhhhc-------------CCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHh
Q 045475          123 KFLHSNATS-HKWALGAFAELLDNSLDEVCN-------------GATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQ  188 (662)
Q Consensus       123 ~fL~s~sts-h~~pf~AIaELVDNAiDA~~a-------------gAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~  188 (662)
                      +.|+-++.+ |+.|-.+|.|||.||.||+.+             ....+.|.+..++  +...|.|.|||.||+.+++.+
T Consensus        13 ~ll~ll~~~lYs~~~iflRELiqNa~DA~~~~~~~~~~~~~~~~~~~~~~I~i~~d~--~~~~l~i~DnGiGMt~~~~~~   90 (213)
T d2iwxa1          13 QLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKP--EQKVLEIRDSGIGMTKAELIN   90 (213)
T ss_dssp             HHHHHHHHCCCSCTTHHHHHHHHHHHHHHHHHHHHTTTCGGGGTTSCCCCEEEEEEG--GGTEEEEEECSSCCCHHHHHH
T ss_pred             HHHHHHHHhhcCCchHHHHHHHHhHHHHHHHHHHhhccCcccccCCccccccccccc--ccceeEEecCCccccHHHHHH
Confidence            356666655 677778999999999999742             1124455555543  467899999999999999987


Q ss_pred             hh-hccccccc---------cCCCccCcccccccccccccCCEEEEEeeeCCCC
Q 045475          189 CM-SLGYSAKS---------KLANTIGQYGNGFKTSTMRLGADVIVFSRCQGTD  232 (662)
Q Consensus       189 ~~-~~G~S~K~---------~~~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g~~  232 (662)
                      .+ .+|.|.+.         .....|||||+||.+|.| ++.++.|.||+.+..
T Consensus        91 ~l~~ia~S~~~~~~~~~~~~~~~~~IGqFGIGfyS~Fm-vad~v~V~trs~~~~  143 (213)
T d2iwxa1          91 NLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFL-VADRVQVISKSNDDE  143 (213)
T ss_dssp             HHTTCCCSTHHHHHHHHHHTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTSC
T ss_pred             HHhhhhcccchHHHhhhhhhhhhhhhcccccchhhhhh-hccceeEEeecCCcc
Confidence            55 59998764         233579999999976655 999999999987653
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Back     information, alignment and structure
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Back     information, alignment and structure
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure