Citrus Sinensis ID: 045479

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480--
Protein Sequence
MTQSLSVSSQNDTFFRCSFFSSTPALIHRNSYSFHQASKKSRNISISVTCASPKIVRSPSLDKHIVTHNRTRFVQKLKTLLLSKPKHYIPIHILSKCRSYLSLPKLKSIRSMIHRYPMIFEVFAVPMPPTPLNATKSGYQQCVRLTPAAAALAAQEISLKSAISNTLANKLQKLLMLSSHRRLLLSKLVHLASDLGLLPNFRSRLCNDYPDKFKIVDTSYGRALELVSWDPQLAVPMPCAETKSLGLIVDRPLKFRHLKLRKGLNLKRRHRNFLIKFGELPDVCPYNTSSEEFPKESLQAEKRACALVREVLGMMVEKQTLIDHLTHFRKDFGLSNNLRAMILRHPELFYVSPKGIRNSVQLVEEFDEKGVLLKRDETLLIKEKLMELVREGKKMRRERRKQSIFGNCIDECCSDGGHDEVDELDNNDDDGFENLFESADSDLDYHFDDDGSFELGDHWENGELWTASSVLTNKDGQCITPW
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccHHHHHHHHccHHHHHHHHHHHHcccccEEcHHHHHHHccccccccHHHHHHHHHHcccEEEEcccccccccccccccccccEEEccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccEEcHHHHHHHHHcccccccccccccccccccEEEEEcccccEEEEccccccccccccHHHHHHcccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccEEEEEcccEEEEEEEcEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEccccccccEEEEEEccccccHHHcccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEcHHHHHHHHHHcccccccHHHHHHHHcccEEEEEccccccccccccccccccEEcccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHHccccEEEEEcccccEEEEEccccHHcHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccHHHHHHHHHcccEEEEEcccccEEEEEEEccccccccccccHHHHHHHHHHHHHHcccHHHHcccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccEEEEEcEEEcccccccccc
Coil and Loop (DISEMBL)
mtqslsvssqndtffrcsffsstpalihrnsysfhqaskksrnisisvtcaspkivrspsldkhivtHNRTRFVQKLKTLLlskpkhyipihiLSKCrsylslpklksIRSMIHRYPMIFevfavpmpptplnatksgyqqCVRLTPAAAALAAQEISLKSAISNTLANKLQKLLMLSSHRRLLLSKLVHLASdlgllpnfrsrlcndypdkfkiVDTSYGRALelvswdpqlavpmpcaetkslglivdrplkfRHLKLRKGLNLKRRHRNFLIkfgelpdvcpyntsseefpkeSLQAEKRACALVREVLGMMVEKQTLIDHLTHFrkdfglsnnLRAMIlrhpelfyvspkgirnSVQLVEEFDEKGVLLKRDETLLIKEKLMELVREGKKMRRERRkqsifgncideccsdgghdevdeldnndddgFENLFesadsdldyhfdddgsfelgdhwengelwtassvltnkdgqcitpw
Flexible Loop (DISEMBL)
mtqslsvssqndtFFRCSFFSSTPALIHRNSYSFHQASKKSRNISISVTcaspkivrspsldkhivthnrTRFVQKLKTLLLSKPKHYIPIHILSKCRSYLSLPKLKSIRSMIHRYPMIFEVFAVPMPPTPLNATKSGYQQCVRLTPAAAALAAQEISLKSAISNTLANKLQKLLMLSSHRRLLLSKLVHLASDLGLLPNFRSRLCNDYPDKFKIVDTSYGRALELVSWDPQLAVPMPCAETKSlglivdrplkfrhlklrkglnlkrrhRNFLIkfgelpdvcpyNTSSEEFPKESLQAEKRACALVREVLGMMVEKQTLIDHLTHFRKDFGLSNNLRAMILRHPELFYVSPKGIRNSVQLVEEFdekgvllkrdetllikeklmelvregkkmrrerrkqsifgncIDECCSDGGHDEVDELDNNDDDGFENLFESADSDLDYHFDDDGSFELGDHWENGELWtassvltnkdgqcitpw
Low Complexity Region (SEG)
MTQSLSVSSQNDTFFRCSFFSSTPALIHRNSYSFHQASKKSRNISISVTCASPKIVRSPSLDKHIVTHNRTRFVQKLKTLLLSKPKHYIPIHILSKCRSYLSLPKLKSIRSMIHRYPMIFEVFAVPMPPTPLNATKSGYQQCVRLTPaaaalaaQEISLKSAISNTLANKLQkllmlsshrrlllsklvhlasdlGLLPNFRSRLCNDYPDKFKIVDTSYGRALELVSWDPQLAVPMPCAETKSLGLIVDRPLKFrhlklrkglnlkrrhrnFLIKFGELPDVCPYNTSSEEFPKESLQAEKRACALVREVLGMMVEKQTLIDHLTHFRKDFGLSNNLRAMILRHPELFYVSPKGIRNSVQLVEEFDEKGVLLKRDETLLIKEKLMELVregkkmrrerrkQSIFGNCIDECCSDGGHdevdeldnndddgfenlfeSADSDLDYHFDDDGSFELGDHWENGELWTASSVLTNKDGQCITPW
Disordered region (IsUnstruct)
************TFFRCSFFSSTPALIHRNSYSFH*******NISISVTCASPKIVRSPSLDKHIVTHNRTRFVQKLKTLLLSKPKHYIPIHILSKCRSYLSLPKLKSIRSMIHRYPMIFEVFAVPMPPTPLNATKSGYQQCVRLTPAAAALAAQEISLKSAISNTLANKLQKLLMLSSHRRLLLSKLVHLASDLGLLPNFRSRLCNDYPDKFKIVDTSYGRALELVSWDPQLAVPMPCAETKSLGLIVDRPLKFRHLKLRKGLNLKRRHRNFLIKFGELPDVCPYN**************KRACALVREVLGMMVEKQTLIDHLTHFRKDFGLSNNLRAMILRHPELFYVSPKGIRNSVQLVEEFDEKGVLLKRDETLLIKEKLMELV*************SIFGNCIDECCSD**************************DLDYHFDDDGSFELGDHWENGELWTASSVLTN*********
Disordered Region (DISOPRED)
*************FFRCSFFSSTPALIH************************PKIVRSPSLDKHIVTHNRTRFVQKLKTLLLSKPKHYIPIHILSKCRSYLSLPKLKSIRSMIHRYPMIFEVFAVPMPPTPLNATKSGYQQCVRLTPAAAALAAQEISLKSAISNTLANKLQKLLMLSSHRRLLLSKLVHLASDLGLLPNFRSRLCNDYPDKFKIVDTSYGRALELVSWDPQLAV*****************LKFRHLKLRKGLNLKRRHRNFLIKFGELPDVCPYNTSSEEFPKESLQAEKRACALVREVLGMMVEKQTLIDHLTHFRKDFGLSNNLRAMILRHPELFYVSPKGIRNSVQLVEEFDEKGVLLKRDETLLIKEKLMELV*****************************************GFENLFESADSDLDYHFDDDGSFELGDHWENGELWT****************
Disordered Region (DISEMBL)
**********NDTFFRCSFFSSTPALIHRNSYSFHQASKKSRNISISVTCASPKIVRSPSLDKHIVTHNRTRFVQKLKTLLLSKPKHYIPIHILSKCRSYLSLPKLKSIRSMIHRYPMIFEVFAVPMPPTPLNATKSGYQQCVRLTPAAAALAAQEISLKSAISNTLANKLQKLLMLSSHRRLLLSKLVHLASDLGLLPNFRSRLCNDYPDKFKIVDTSYGRALELVSWDPQLAVPMPCAETKSLGLIVDRPLKFRHLKLRKGLNLKRRHRNFLIKFGELPDVCPYNTSSEEFPKESLQAEKRACALVREVLGMMVEKQTLIDHLTHFRKDFGLSNNLRAMILRHPELFYVSPKGIRNSVQLVEEFDEKGVLLKRDETLLIKEKLMELVREG********KQSIFGNCIDECCSDGGHDEVDELDNNDDDGFENLFESADSDLDYHFDDDGSFELGDHWENGELWTASSVLTNKDGQCITPW
Disordered Region (DISPRO)
MTQSLSVSSQNDTFFRCSFFSSTPALIHRNSYSFHQASKKSRNISISVTCASPKIVRSPSLDKHIVTHNRTRFVQKLKTLLLSKPKHYIPIHILSKCRSYLSLPKLKSIRSMIHRYPMIFEVFAVPMPPTPLNATKSGYQQCVRLTPAAAALAAQEISLKSAISNTLANKLQKLLMLSSHRRLLLSKLVHLASDLGLLPNFRSRLCNDYPDKFKIVDTSYGRALELVSWDPQLAVPMPCAETKSLGLIVDRPLKFRHLKLRKGLNLKRRHRNFLIKFGELPDVCPYNTSSEEFPKESLQAEKRACALVREVLGMMVEKQTLIDHLTHFRKDFGLSNNLRAMILRHPELFYVSPKGIRNSVQLVEEFDEKGVLLKRDETLLIKEKLMELVREGK*************************************************LDYHFDDDGSFELGDHWENGELWTASSVLTNK********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTQSLSVSSQNDTFFRCSFFSSTPALIHRNSYSFHQASKKSRNISISVTCASPKIVRSPSLDKHIVTHNRTRFVQKLKTLLLSKPKHYIPIHILSKCRSYLSLPKLKSIRSMIHRYPMIFEVFAVPMPPTPLNATKSGYQQCVRLTPAAAALAAQEISLKSAISNTLANKLQKLLMLSSHRRLLLSKLVHLASDLGLLPNFRSRLCNDYPDKFKIVDTSYGRALELVSWDPQLAVPMPCAETKSLGLIVDRPLKFRHLKLRKGLNLKRRHRNFLIKFGELPDVCPYNTSSEEFPKESLQAEKRACALVREVLGMMVEKQTLIDHLTHFRKDFGLSNNLRAMILRHPELFYVSPKGIRNSVQLVEEFDEKGVLLKRDETLLIKEKLMELVREGKKMRRERRKQSIFGNCIDECCSDGGHDEVDELDNNDDDGFENLFESADSDLDYHFDDDGSFELGDHWENGELWTASSVLTNKDGQCITPW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	482
225433680	485	PREDICTED: uncharacterized protein LOC10	0.981	0.975	0.645	1e-167
255564436	475	conserved hypothetical protein [Ricinus	0.977	0.991	0.652	1e-161
224069092	483	predicted protein [Populus trichocarpa]	0.991	0.989	0.646	1e-161
449469168	484	PREDICTED: uncharacterized protein LOC10	0.883	0.880	0.649	1e-154
297793891	492	EMB1692 [Arabidopsis lyrata subsp. lyrat	0.875	0.857	0.632	1e-148
15242586	494	Ubiquitin carboxyl-terminal hydrolase fa	0.941	0.919	0.574	1e-140
356547041	498	PREDICTED: uncharacterized protein LOC10	0.929	0.899	0.625	1e-136
357161595	493	PREDICTED: uncharacterized protein LOC10	0.757	0.740	0.453	3e-80
115457686	502	Os04g0312100 [Oryza sativa Japonica Grou	0.721	0.693	0.490	1e-78
242032573	504	hypothetical protein SORBIDRAFT_01g00411	0.834	0.797	0.449	1e-75

>gi|225433680|ref|XP_002265738.1| PREDICTED: uncharacterized protein LOC100266927 [Vitis vinifera] gi|296089617|emb|CBI39436.3| unnamed protein product [Vitis vinifera]

 Score =  594 bits (1531), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 319/494 (64%), Positives = 372/494 (75%), Gaps = 21/494 (4%)

Query: 1   MTQSLSVSSQND---TFFRCSFFSSTPALIHRNSYSFHQASKKSRNISISVTCASPKIVR 57
           M  SL VSSQ D    F   +F    P  I          ++K +N+SISV+C+S KIVR
Sbjct: 1   MALSLPVSSQKDKHTIFLNSNFLPLNPQWIPYTINRNDSKNRKPKNLSISVSCSSLKIVR 60

Query: 58  SPSLDKHIVTHNRTRFVQKLKTLLLSKPKHYIPIHILSKCRSYLSLPKLKSIRSMIHRYP 117
           SPSLDK+IV  N+ RF+QKLKTLLLSKPKHY+PIHILSKCRSYLSL K +S+ SMI+RYP
Sbjct: 61  SPSLDKNIVKQNKLRFIQKLKTLLLSKPKHYMPIHILSKCRSYLSLSKPRSLLSMIYRYP 120

Query: 118 MIFEVFAVPMPPTPLNATKSGYQQCVRLTPAAAALAAQEISLKSAISNTLANKLQKLLML 177
            IFE+F +P PPTP NATKS  Q CVRLTPAAA+LAAQE +LKSA+S TLA KLQKLLML
Sbjct: 121 SIFELFRIPTPPTPFNATKSCTQLCVRLTPAAASLAAQECNLKSAMSITLATKLQKLLML 180

Query: 178 SSHRRLLLSKLVHLASDLGLLPNFRSRLCNDYPDKFKIVDTSYGRALELVSWDPQLAVPM 237
           SSHRRLLL+KLVHLA DLGL PNFRSRLCND+PDKFK VDTSYGRALELVSWDP LA P+
Sbjct: 181 SSHRRLLLTKLVHLAPDLGLPPNFRSRLCNDHPDKFKTVDTSYGRALELVSWDPHLANPL 240

Query: 238 PCAETKSLGLIVDRPLKFRHLKLRKGLNLKRRHRNFLIKFGELPDVCPYNTSSEEFPKES 297
           P  E +SLGLIVDRPLKF+HL+LRKGLNLKRRHR+FLIK  ELPDVCPY TS  EFPKES
Sbjct: 241 PSPEVQSLGLIVDRPLKFKHLRLRKGLNLKRRHRDFLIKLQELPDVCPYKTSVGEFPKES 300

Query: 298 LQAEKRACALVREVLGMMVEKQTLIDHLTHFRKDFGLSNNLRAMILRHPELFYVSPKGIR 357
           ++AEKRAC +VREVLGMMVEK+TL+DHLTHFRKDFGL N LR M++RHPELFYVS KG R
Sbjct: 301 IEAEKRACGVVREVLGMMVEKRTLVDHLTHFRKDFGLPNKLRGMLVRHPELFYVSLKGER 360

Query: 358 NSVQLVEEFDEKGVLLKRDETLLIKEKLMELVREGKKMRRERRKQSIFGNCIDECCSDGG 417
           +SV LVE +D+KG LL++DET +IKE+LM LVREGKKMRRERR QSI           GG
Sbjct: 361 DSVFLVEGYDDKGTLLEKDETSVIKEQLMGLVREGKKMRRERRNQSINNEV-------GG 413

Query: 418 H--DEVDELDNNDDDGFENLFESADSDLDYHFDDDGSFELGDHWE------NGELWTASS 469
           +     D +D+   DGF++L +  D D DY  +D GS    +  E          WTA +
Sbjct: 414 YDDTIDDHIDDGTKDGFDSLLDFEDIDGDY--EDFGSDNEEEDDEYDLSRVGVNFWTADA 471

Query: 470 VLTNKDGQCIT-PW 482
            + N + +  + PW
Sbjct: 472 HVVNDEEKGPSEPW 485

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564436|ref|XP_002523214.1| conserved hypothetical protein [Ricinus communis] gi|223537510|gb|EEF39135.1| conserved hypothetical protein [Ricinus communis]

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 317/486 (65%), Positives = 377/486 (77%), Gaps = 15/486 (3%)

Query: 1   MTQSLSVS-SQNDTFF-RCSFFSSTPALIHRNSYSFHQASKKSRNISISVTCASPKIVRS 58
           M Q LS+S  QN+ F  + SF  S P +   NS       KKSR++S+S++C S KIVR 
Sbjct: 1   MMQLLSLSLPQNNCFLSKSSFLPSAPRIYLLNS-------KKSRHVSLSISCYSTKIVRD 53

Query: 59  PSLDKHIVTHNRTRFVQKLKTLLLSKPKHYIPIHILSKCRSYLSLPKLKSIRSMIHRYPM 118
             LDKH+V  N+ RFVQKLKTLLLSKPKHYIP+HILSKCRSYLSLP  +SIRSMI RYP 
Sbjct: 54  AKLDKHVVRQNKIRFVQKLKTLLLSKPKHYIPLHILSKCRSYLSLPDRRSIRSMILRYPS 113

Query: 119 IFEVFAVPMPPTPLNATKSGYQQCVRLTPAAAALAAQEISLKSAISNTLANKLQKLLMLS 178
           IF++F +P+P  P NATK   Q CVRLT +AAALAAQE+ L+SAI+N LA KLQKLLMLS
Sbjct: 114 IFKLFTIPIPHLPFNATKPYSQLCVRLTQSAAALAAQELELQSAIANNLATKLQKLLMLS 173

Query: 179 SHRRLLLSKLVHLASDLGLLPNFRSRLCNDYPDKFKIVDTSYGRALELVSWDPQLAVPMP 238
           SH RLLLSKLVHLA DLGL PNFRSRLCND+P+KFK VDTSYGRA+ELV+WD QLA+P+P
Sbjct: 174 SHHRLLLSKLVHLAPDLGLPPNFRSRLCNDHPEKFKTVDTSYGRAVELVTWDAQLAIPLP 233

Query: 239 CAETKSLGLIVDRPLKFRHLKLRKGLNLKRRHRNFLIKFGELPDVCPYNTSSEEFPKESL 298
            A+  SL LIVDRPLKF+HL+LRKGLNLKRRH++FLIKF ELPDVCPY TSSEEF +ES+
Sbjct: 234 RADA-SLDLIVDRPLKFKHLRLRKGLNLKRRHQDFLIKFEELPDVCPYKTSSEEFARESV 292

Query: 299 QAEKRACALVREVLGMMVEKQTLIDHLTHFRKDFGLSNNLRAMILRHPELFYVSPKGIRN 358
           +AEKRACA+VRE+LGM VEK+TL+DHLTHFRK+FG SN LR MI+RHPELFYVS KG+RN
Sbjct: 293 EAEKRACAVVREILGMTVEKRTLLDHLTHFRKEFGFSNKLRGMIIRHPELFYVSVKGLRN 352

Query: 359 SVQLVEEFDEKGVLLKRDETLLIKEKLMELVREGKKMRRERRKQSIFGNCIDECCSDGGH 418
           SV LVE FD+KGVLLK+DE   +K++LM LV + K MRRERR   I  N  D   SD   
Sbjct: 353 SVLLVEGFDDKGVLLKKDEISAMKDQLMRLVSQSKTMRRERR-NGIVMNTNDIRDSDDAS 411

Query: 419 DEVDELDNNDDDGFENLFESADSDLDYHFDDD--GSFELGDHWENGELWTASSVLTNKDG 476
           DE D++D++ DDGFEN+FES DS   Y FD+D   S E+  H E+G  WT     +N++G
Sbjct: 412 DEFDDIDDDYDDGFENVFESEDSGFVYDFDNDLHASCEIASHGEHGGFWTVDG--SNEEG 469

Query: 477 QCITPW 482
           +   PW
Sbjct: 470 RSSEPW 475

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069092|ref|XP_002302898.1| predicted protein [Populus trichocarpa] gi|222844624|gb|EEE82171.1| predicted protein [Populus trichocarpa]

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 315/487 (64%), Positives = 371/487 (76%), Gaps = 9/487 (1%)

Query: 1   MTQSLSVSSQNDTFFRCSFF-SSTPALIHRNSYSFHQASKKSRNISISVTCASPKIVRSP 59
           M   LS  SQ   F + +F  SSTP+ +H N        +K R   +S++C++PKIVR  
Sbjct: 1   MALYLSSPSQTGCFLKYTFLPSSTPSELHANP---SLTCRKPRYKRLSISCSAPKIVRDV 57

Query: 60  SLDKHIVTHNRTRFVQKLKTLLLSKPKHYIPIHILSKCRSYLSLPKLKSIRSMIHRYPMI 119
           SLDKH+V  +R RFVQKLKTLLLSKPKHYIP+HILSKCRSYLSL K  SIRSMI+RYP I
Sbjct: 58  SLDKHVVRQSRIRFVQKLKTLLLSKPKHYIPLHILSKCRSYLSLTKPCSIRSMIYRYPSI 117

Query: 120 FEVFAVPMPPTPLNATKSGYQQCVRLTPAAAALAAQEISLKSAISNTLANKLQKLLMLSS 179
           FE+F +P PP PLNATK  YQ CVRLTPAAAALAAQE+ L+S IS  LANKLQKLLMLSS
Sbjct: 118 FEIFPMPTPPLPLNATKPYYQLCVRLTPAAAALAAQELRLQSEISTDLANKLQKLLMLSS 177

Query: 180 HRRLLLSKLVHLASDLGLLPNFRSRLCNDYPDKFKIVDTSYGRALELVSWDPQLAVPMPC 239
           HRRL+LSKLVHLA DLGL  NFRSRLCND+PDKF+ VDTSYGRALELVSWD QLA+P+P 
Sbjct: 178 HRRLVLSKLVHLAPDLGLPANFRSRLCNDHPDKFRTVDTSYGRALELVSWDEQLAIPLPA 237

Query: 240 AETKSLGLIVDRPLKFRHLKLRKGLNLKRRHRNFLIKFGELPDVCPYNTSSEEFPKESLQ 299
            +  S  LIVDRPLKF+ L LRKGLNLKRRHR+FL+K G+LPDVCPYNT  EEF KES++
Sbjct: 238 PKV-SRELIVDRPLKFKQLTLRKGLNLKRRHRDFLVKLGDLPDVCPYNTCLEEFAKESVE 296

Query: 300 AEKRACALVREVLGMMVEKQTLIDHLTHFRKDFGLSNNLRAMILRHPELFYVSPKGIRNS 359
           AEKRACA+VREVL M VEK+TLIDHLTHFRK+FGLSN LR MI+RHPELFYVS KG+R+S
Sbjct: 297 AEKRACAVVREVLAMTVEKRTLIDHLTHFRKEFGLSNKLRGMIIRHPELFYVSLKGLRDS 356

Query: 360 VQLVEEFDEKGVLLKRDETLLIKEKLMELVREGKKMRRERRKQSIFGNCIDECCSDGGHD 419
           V LVE FDE G LL+ D T +IK++LM+LV E K++RRERRK+  +GN   +      +D
Sbjct: 357 VFLVEGFDENGKLLENDRTSVIKDQLMKLVSEAKRLRRERRKRGKYGNDTGDSNDVDEND 416

Query: 420 EVDELDNNDDDGFENLFESADSDLDYHF--DDDGSFELGDHWENGELWTASSVL--TNKD 475
           E+ +  ++ DDGFEN+F+S DS  DY F   DD   E   + ENGELWTA +    T+  
Sbjct: 417 ELLDAFDDYDDGFENVFDSEDSGFDYEFIDKDDKYNEFDGYGENGELWTADTSFDGTSDG 476

Query: 476 GQCITPW 482
           G    PW
Sbjct: 477 GGSREPW 483

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469168|ref|XP_004152293.1| PREDICTED: uncharacterized protein LOC101217073 [Cucumis sativus]

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 285/439 (64%), Positives = 339/439 (77%), Gaps = 13/439 (2%)

Query: 50  CASPKIVRSPSLDKHIVTHNRTRFVQKLKTLLLSKPKHYIPIHILSKCRSYLSLPKLKSI 109
           C+S KIVRS SLD+H V HN+TRFVQKL  LLLSKPKHYIP+HILSKCR YLSLP+ +S+
Sbjct: 53  CSSIKIVRSRSLDRHAVKHNKTRFVQKLIILLLSKPKHYIPLHILSKCRGYLSLPRPRSL 112

Query: 110 RSMIHRYPMIFEVFAVPMPPTPLNATKSGYQQCVRLTPAAAALAAQEISLKSAISNTLAN 169
            SMIHRYP IFE+F++P PPTPLNATK   Q CVRLTPAAA++A Q+  LK  ISN LA 
Sbjct: 113 LSMIHRYPSIFELFSIPYPPTPLNATKLYPQLCVRLTPAAASIAKQDSDLKMVISNKLAE 172

Query: 170 KLQKLLMLSSHRRLLLSKLVHLASDLGLLPNFRSRLCNDYPDKFKIVDTSYGRALELVSW 229
           KLQKLLMLSSH R+LLSKLVHLA DL L PNFRSRLCNDYP+KF+ VDTSYGRALELVSW
Sbjct: 173 KLQKLLMLSSHHRILLSKLVHLAPDLSLPPNFRSRLCNDYPEKFRTVDTSYGRALELVSW 232

Query: 230 DPQLAVPMPCAETKSLGLIVDRPLKFRHLKLRKGLNLKRRHRNFLIKFGELPDVCPYNTS 289
           DP+LA P+PC +  S  LIVDRPLKF  L+LRKGLNLKR H+ FLIKF +LPDVCPY   
Sbjct: 233 DPELAKPLPCIQVPSRELIVDRPLKFNLLRLRKGLNLKRTHQEFLIKFRDLPDVCPYKNP 292

Query: 290 SEEFPKESLQAEKRACALVREVLGMMVEKQTLIDHLTHFRKDFGLSNNLRAMILRHPELF 349
           + E  KESL++EKRACA+VREVLGMMVEK+TLIDHLTHFRKDFGL N LR MI+RHPELF
Sbjct: 293 ASELAKESLESEKRACAVVREVLGMMVEKRTLIDHLTHFRKDFGLPNKLRGMIVRHPELF 352

Query: 350 YVSPKGIRNSVQLVEEFDEKGVLLKRDETLLIKEKLMELVREGKKMRRERRKQSIFGNCI 409
           YVS KG R+SV LVE FD+KGVLL++DETL IK + M L++E K++RRE++K  I+ +  
Sbjct: 353 YVSLKGQRDSVFLVEGFDDKGVLLEKDETLAIKNQWMTLLKEAKRLRREKKKAQIYDSKY 412

Query: 410 DECCSDGGHDEVDELDN----NDDDGFENLFESADSDLDYHFDDDGSFELGDHWENGELW 465
                +  HD   E++N    + DDGFE+LF+  D D    F+D+ S  +   W NG+ W
Sbjct: 413 GNDHENNNHDH--EMENDYDDDYDDGFESLFQYEDLD----FEDENS-GVPSIWSNGDFW 465

Query: 466 TASSV--LTNKDGQCITPW 482
           T ++V    + DG  I PW
Sbjct: 466 TTNNVDISNDADGGHIEPW 484

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793891|ref|XP_002864830.1| EMB1692 [Arabidopsis lyrata subsp. lyrata] gi|297310665|gb|EFH41089.1| EMB1692 [Arabidopsis lyrata subsp. lyrata]

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 274/433 (63%), Positives = 335/433 (77%), Gaps = 11/433 (2%)

Query: 22  STPALIHRNSYSFHQASKKSRNISISVTCASPKIVRSPSLDKHIVTHNRTRFVQKLKTLL 81
           S P  I  ++ S   +SKK  ++S++++C++ KIVRSPSLD+H+V  NR RFVQKLKT+L
Sbjct: 24  SIPLEIRTSNLSTRTSSKKLGSLSLNISCSAHKIVRSPSLDRHVVKQNRVRFVQKLKTIL 83

Query: 82  LSKPKHYIPIHILSKCRSYLSLPKLKSIRSMIHRYPMIFEVFAVPMPPTPLNATKSGYQQ 141
           LSKPKH+IPI IL KCRSYL +   ++I SMI RYP IFE+F  P P  P+NATK   Q 
Sbjct: 84  LSKPKHFIPIQILYKCRSYLCIENPRAILSMIRRYPTIFELFTTPTPHLPMNATKPLSQL 143

Query: 142 CVRLTPAAAALAAQEISLKSAISNTLANKLQKLLMLSSHRRLLLSKLVHLASDLGLLPNF 201
           CVRLT AA++LA QE++LKS IS+ LA KLQKLLMLSSHRRLLLSKLVH+A D G  PNF
Sbjct: 144 CVRLTSAASSLAMQELNLKSEISDQLATKLQKLLMLSSHRRLLLSKLVHIAPDFGFPPNF 203

Query: 202 RSRLCNDYPDKFKIVDTSYGRALELVSWDPQLAVPMPCAETKSLGLIVDRPLKFRHLKLR 261
           RSRLCNDYPDKFK VDTSYGRALELVSWDP+LA  MP  E    GLIVDRPLKF+ L LR
Sbjct: 204 RSRLCNDYPDKFKTVDTSYGRALELVSWDPELANQMPSPEVVDRGLIVDRPLKFKRLNLR 263

Query: 262 KGLNLKRRHRNFLIKFGELPDVCPYNTSSEEFPKESLQAEKRACALVREVLGMMVEKQTL 321
           KGLNLKRRH+NFLIKF E PDVCPY  SSE+   ES++AEKRACA+VREVLG+ VEK+TL
Sbjct: 264 KGLNLKRRHQNFLIKFRESPDVCPYKMSSEDLASESIEAEKRACAVVREVLGLTVEKRTL 323

Query: 322 IDHLTHFRKDFGLSNNLRAMILRHPELFYVSPKGIRNSVQLVEEFDEKGVLLKRDETLLI 381
           IDHLTHFRK+F L N LRA+I+RHPELFYVS KG R+SV LVE +++ G LL+ DETL+I
Sbjct: 324 IDHLTHFRKEFALPNKLRALIVRHPELFYVSIKGTRDSVFLVEAYNDNGDLLEEDETLVI 383

Query: 382 KEKLMELVREGKKMRR-------ERRKQSIFGNCIDECCSDGGHDEVDELDNNDDDGFEN 434
           +E+L++L++EGK++RR       +R ++   G+  DE   D   D    LD+  +DGFEN
Sbjct: 384 RERLIDLIQEGKRIRRERRKKGDKRVEEYSNGDNRDETIDDYESD----LDDEYEDGFEN 439

Query: 435 LFESADSDLDYHF 447
           LF+S DS ++YHF
Sbjct: 440 LFDSEDSGVEYHF 452

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242586|ref|NP_201104.1| Ubiquitin carboxyl-terminal hydrolase family protein [Arabidopsis thaliana] gi|9758299|dbj|BAB08842.1| unnamed protein product [Arabidopsis thaliana] gi|91805719|gb|ABE65588.1| hypothetical protein At5g62990 [Arabidopsis thaliana] gi|332010300|gb|AED97683.1| Ubiquitin carboxyl-terminal hydrolase family protein [Arabidopsis thaliana]

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 277/482 (57%), Positives = 341/482 (70%), Gaps = 28/482 (5%)

Query: 1   MTQSLSVSSQNDTFFRCSFFSSTPALIHRNSYSFHQASKKSRNISISVTCASPKIVRSPS 60
           +TQ +  S +    F   F  S P  I R++ +   +SKK  ++S++++C++ KIVRSPS
Sbjct: 5   LTQLVPSSPEKLFCFSSFFLPSIPLEIRRSNVTTKTSSKKLGSLSLNISCSAHKIVRSPS 64

Query: 61  LDKHIVTHNRTRFVQKLKTLLLSKPKHYIPIHILSKCRSYLSLPKLKSIRSMIHRYPMIF 120
           LD+H+V  NR RFVQKL TLLLSKPKHYIPI IL KCRSYL +    +I SMI RYP IF
Sbjct: 65  LDRHVVKQNRVRFVQKLNTLLLSKPKHYIPIEILYKCRSYLCIENPLAILSMIRRYPTIF 124

Query: 121 EVFAVPMPPTPLNATKSGYQQCVRLTPAAAALAAQEISLKSAISNTLANKLQKLLMLSSH 180
           E+F  P P  P+NATK   Q CVRLT AA++LA QE++LKS IS+ LA KLQKLLMLSSH
Sbjct: 125 ELFTTPTPHLPMNATKPLSQLCVRLTSAASSLAMQELNLKSEISDKLATKLQKLLMLSSH 184

Query: 181 RRLLLSKLVHLASDLGLLPNFRSRLCNDYPDKFKIVDTSYGRALELVSWDPQLAVPMPCA 240
           RRLLLSKLVH+A D G  PNFRSRLCNDYPDKFK VDTSYGRALELVS DP+LA  MP  
Sbjct: 185 RRLLLSKLVHIAPDFGFPPNFRSRLCNDYPDKFKTVDTSYGRALELVSSDPELANQMPSP 244

Query: 241 ETKSLGLIVDRPLKFRHLKLRKGLNLKRRHRNFLIKFGELPDVCPYNTSSEEFPKESLQA 300
           E    GLIVDRPLKF+ L LR+GLNLKRRH+ FLIKF E PDVCPY  SS+    ES++A
Sbjct: 245 EVDR-GLIVDRPLKFKRLNLRRGLNLKRRHQGFLIKFRESPDVCPYKMSSDYLASESIEA 303

Query: 301 EKRACALVREVLGMMVEKQTLIDHLTHFRKDFGLSNNLRAMILRHPELFYVSPKGIRNSV 360
           EKRACA+VREVLG+ VEK+TLIDHLTHFRK+F L N LR +I+RHPELFYVS KG+R+SV
Sbjct: 304 EKRACAVVREVLGLTVEKRTLIDHLTHFRKEFSLPNKLRDLIVRHPELFYVSIKGMRDSV 363

Query: 361 QLVEEFDEKGVLLKRDETLLIKEKLMELVRE---------------GKKMRRERRKQSIF 405
            LVE +++ G LL +DE L+I+E+L++L++E               G K   E+RK    
Sbjct: 364 FLVEAYNDNGDLLDKDERLVIRERLIDLIQEGKRIRRERRRKGATLGDKSVEEKRKD--- 420

Query: 406 GNCIDECCSDGGHDEVDELDNNDDDGFENLFESADSDLDYHFDDDGSFEL-GDHWENGEL 464
               DE   D   D  DE     +DGFENLF+S D  ++YHFD++   +  G + E+ E 
Sbjct: 421 ----DETIDDYDSDLDDEY----EDGFENLFDSEDLGVEYHFDEEDDDDEAGVNGESVEY 472

Query: 465 WT 466
           W+
Sbjct: 473 WS 474

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547041|ref|XP_003541926.1| PREDICTED: uncharacterized protein LOC100816820 [Glycine max]

 Score =  493 bits (1268), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 294/470 (62%), Positives = 344/470 (73%), Gaps = 22/470 (4%)

Query: 18  SFFSSTPALIHRNSYSFHQASK-KSRN----ISISVTCASPKIVRSPSLDKHIVTHNRTR 72
           SF SST  L      SF    K K RN    + +S++C+S K+VR  SLD+H+VT N+TR
Sbjct: 16  SFLSSTFVLGQTTPLSFSINEKLKPRNYLNSVLVSISCSSIKLVRDRSLDRHVVTKNKTR 75

Query: 73  FVQKLKTLLLSKPKHYIPIHILSKCRSYLSLPKLKSIRSMIHRYPMIFEVFAVPMPPTPL 132
           FVQKLKTLLLSKPKHYIP+HILSKCR+YL L K +SI SMIHRYP IFE+F VP PPTPL
Sbjct: 76  FVQKLKTLLLSKPKHYIPLHILSKCRTYLCLSKPRSILSMIHRYPSIFELFNVPWPPTPL 135

Query: 133 NATKSGYQQCVRLTPAAAALAAQEISLKSAISNTLANKLQKLLMLSSHRRLLLSKLVHLA 192
           NATK   Q CVRLTPAAAALAA+E+SL+S+ISN LA KLQKLLMLSSHRRLLLSKLVH A
Sbjct: 136 NATKLHPQLCVRLTPAAAALAAEELSLQSSISNMLATKLQKLLMLSSHRRLLLSKLVHFA 195

Query: 193 SDLGLLPNFRSRLCNDYPDKFKIVDTSYGRALELVSWDPQLAVPM--PCAETKSLGLIVD 250
            DLGL PNFRSRLCND+PDKFKIVDT YGRALELVSWD  LA+P+  P + + SLG IVD
Sbjct: 196 PDLGLPPNFRSRLCNDHPDKFKIVDTPYGRALELVSWDVNLAMPLVPPASSSHSLGFIVD 255

Query: 251 RPLKFRHLKLRKGLNLKRRHRNFLIKFGELPDVCPYNTSSEEFPKESLQAEKRACALVRE 310
           RPLKF+ L LRKGLNLKRRHR+FL+KF E+P VCPY   +E   KESL+AEKR+CALVRE
Sbjct: 256 RPLKFKQLSLRKGLNLKRRHRDFLLKFEEMPLVCPYRNPAEALAKESLEAEKRSCALVRE 315

Query: 311 VLGMMVEKQTLIDHLTHFRKDFGLSNNLRAMILRHPELFYVSPKGIRNSVQLVEEFDEKG 370
           VL M VEK+TLIDHLTHFRK+FGL N LR MI+RHPELFYVS KG R+SV LVE F EKG
Sbjct: 316 VLAMTVEKRTLIDHLTHFRKEFGLPNKLRGMIIRHPELFYVSLKGERDSVFLVEGFGEKG 375

Query: 371 VLLKRDE--TLLIKEKLMELVREGKKMRRERRKQSIFGNCIDECCSDGGHD--------- 419
            LL++DE   L I++K M+L RE K+MRRERRK  I  +      +D  +          
Sbjct: 376 DLLEKDEDGVLFIQDKWMDLARESKRMRRERRKGRISQDVGSLNDADQNNYDSDDDYDDN 435

Query: 420 -EVDELDNNDDDGFENLFESADSDLDYHFDDDGSFELGDHWENGELWTAS 468
            E+D      DDGFE++FE  D + +     +  F   +   +GE W A 
Sbjct: 436 IEIDNFKEGYDDGFEDIFEELDFEDEDDDHTNRFFAQNN---SGEFWIAG 482

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357161595|ref|XP_003579141.1| PREDICTED: uncharacterized protein LOC100842188, partial [Brachypodium distachyon]

 Score =  305 bits (781), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 175/386 (45%), Positives = 249/386 (64%), Gaps = 21/386 (5%)

Query: 35  HQASKKSRNISISVTCASP--------------KIVRSPSLDKHIVTHNRTRFVQKLKTL 80
           H A+   + +S ++ C++               K+VR P+LD+H    +R RF +KL TL
Sbjct: 31  HPATPTPKPLSAAIRCSATAPPAAARARPIPPPKLVRCPALDRHASRASRLRFARKLLTL 90

Query: 81  LLSKPKHYIPIHILSKCRSYLSLPKLKSIRSMIHRYPMIFEVFAVPMPPTPLNATKSGYQ 140
           LLSKP+ ++P+ +L +CR +L +P+ + +   + RYP IF +F  P+   PL+ + S   
Sbjct: 91  LLSKPRRFLPLRVLRRCRRFLGVPRDRPLVPFVLRYPAIFRLFHAPVS-FPLSPSLS--T 147

Query: 141 QCVRLTPAAAALAAQEISLK-SAISNTLANKLQKLLMLSSHRRLLLSKLVHLASDLGLLP 199
             V LTPAA ALA    +L+ S ++  LA K  +LL+++    LL+SKL HLA DLGL  
Sbjct: 148 LAVALTPAAHALADDLAALRGSELAPGLAAKFHRLLLMTPRHSLLVSKLAHLAPDLGLAM 207

Query: 200 NFRSRLCNDYPDKFKIVDTSYGRALELVS-WDPQLAVPMPCAETKSLGLIVDRPLKFRHL 258
           +FR+ LC ++PD F    TS+G AL LV    P  +        +S   ++DRP +F HL
Sbjct: 208 DFRATLCPNHPDLFTFAHTSHGHALRLVDDPTPPPSPSPLPPPVRSADRLIDRPRRFPHL 267

Query: 259 KLRKGLNLKRRHRNFLIKFGELPDVCPYNTSSEEFPKESLQAEKRACALVREVLGMMVEK 318
            LR+GLNL+R HR++L++F  LP+V P+    E    E   AE+RACA+VREVL M VEK
Sbjct: 268 PLRRGLNLRRAHRDYLLRFHSLPEVSPFEPLEEGASAE--MAERRACAVVREVLAMTVEK 325

Query: 319 QTLIDHLTHFRKDFGLSNNLRAMILRHPELFYVSPKGIRNSVQLVEEFDEKGVLLKRDET 378
           +TL+DHLTHFR+DFGL N LRAM++RHPE+FYVS KG+R+SV LVE FD+ G LL  DE 
Sbjct: 326 RTLVDHLTHFRRDFGLPNRLRAMLVRHPEMFYVSIKGVRHSVFLVEAFDDDGRLLVEDEM 385

Query: 379 LLIKEKLMELVREGKKMRRERRKQSI 404
           L+ +++L ELVREGK++RR R+K  +
Sbjct: 386 LVGRDRLEELVREGKRIRRARKKGDL 411

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115457686|ref|NP_001052443.1| Os04g0312100 [Oryza sativa Japonica Group] gi|38344391|emb|CAE02242.2| OSJNBb0054B09.13 [Oryza sativa Japonica Group] gi|113564014|dbj|BAF14357.1| Os04g0312100 [Oryza sativa Japonica Group] gi|116309200|emb|CAH66293.1| OSIGBa0139J17.2 [Oryza sativa Indica Group] gi|215767901|dbj|BAH00130.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 176/359 (49%), Positives = 241/359 (67%), Gaps = 11/359 (3%)

Query: 49  TCASPKIVRSPSLDKHIVTHNRTRFVQKLKTLLLSKPKHYIPIHILSKCRSYLSLPKLKS 108
           +   PK+VR P+LD+     NR RF +KL  LLLSKP+ ++P+ +L +C  YL LP  + 
Sbjct: 62  SIPPPKLVRCPALDRQAARANRLRFARKLLVLLLSKPRRFLPLRVLRRCHRYLGLPPHRR 121

Query: 109 IRSMIH---RYPMIFEVFAVPMPPTPLNATKSGYQQCVRLTPAAAALAAQEISLK--SAI 163
            R ++    RYP +F +F  P    PL+   S     V LTPAA ALAA   +L+  S +
Sbjct: 122 RRPLVPFVLRYPALFRLFQAPTS-HPLSPNLSTL--AVALTPAAEALAADLAALRGSSEL 178

Query: 164 SNTLANKLQKLLMLSSHRRLLLSKLVHLASDLGLLPNFRSRLCNDYPDKFKIVDTSYGRA 223
           +  LA K+ +LL+L+  R LL+SK+ HLA DLGL  +FR+ LC  +PD F  V+TS+G A
Sbjct: 179 APRLAAKMHRLLLLAPGRSLLVSKIAHLAPDLGLAMDFRATLCPQHPDLFTFVNTSHGHA 238

Query: 224 LELVSWDPQLAVPMPCAETKSLG-LIVDRPLKFRHLKLRKGLNLKRRHRNFLIKFGELPD 282
           L+LV   P    P+P     +    ++DRP +F HLKLR+GLNL+R HR++L++F  LP+
Sbjct: 239 LQLVDPPPPPPPPLPPFRPAAPSDRLIDRPRRFPHLKLRRGLNLRRAHRDYLLRFHSLPE 298

Query: 283 VCPYNTSSEEFPKESLQAEKRACALVREVLGMMVEKQTLIDHLTHFRKDFGLSNNLRAMI 342
           V P+    E    E +  E+RACA+VREVL M VEK+TL+DHLTHFR+DFGL N LRAM+
Sbjct: 299 VSPFEPLDEGASLEMM--ERRACAVVREVLAMTVEKRTLVDHLTHFRRDFGLPNRLRAML 356

Query: 343 LRHPELFYVSPKGIRNSVQLVEEFDEKGVLLKRDETLLIKEKLMELVREGKKMRRERRK 401
           +RHPELFYVS KG+R+SV LVE FD+ G LL  D+ L+ +++L ELVREGK+MRR ++K
Sbjct: 357 VRHPELFYVSVKGLRHSVFLVEAFDDDGRLLVEDDMLVARDRLEELVREGKRMRRAKKK 415

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242032573|ref|XP_002463681.1| hypothetical protein SORBIDRAFT_01g004110 [Sorghum bicolor] gi|241917535|gb|EER90679.1| hypothetical protein SORBIDRAFT_01g004110 [Sorghum bicolor]

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 194/432 (44%), Positives = 262/432 (60%), Gaps = 30/432 (6%)

Query: 56  VRSPSLDKHIVTHNRTRFVQKLKTLLLSKPKHYIPIHILSKCRSYLSLPKL-KSIRSMIH 114
           VR  +LD+     +R RFV+KL TLLLSKP+H++P+ +L++CR +L LP+  + +  M+ 
Sbjct: 72  VRCAALDRQAARASRLRFVRKLLTLLLSKPRHFLPLRVLNRCRRFLGLPRRGRPLIPMVL 131

Query: 115 RYPMIFEVFAVPMPPTPLNATKSGYQQCVRLTPAAAALAAQEISL--KSAISNTLANKLQ 172
           RYP +F +F      T L  + S     V LTPAA ALAA   +L   S  ++ LA K+ 
Sbjct: 132 RYPALFRLFQAH---TSLPLSPSLSTLAVGLTPAAEALAADLAALRATSTGADALAAKIH 188

Query: 173 KLLMLSSHRRLLLSKLVHLASDLGLLPNFRSRLCNDYPDKFKIVDTSYGRALELVSWDPQ 232
           +LL+++    + +++LVHLA DLGL  +FR+ LC  +PD F++V+TS G AL+L    P 
Sbjct: 189 RLLLMTPRGSIPVNRLVHLAPDLGLAMDFRATLCPRHPDLFRLVNTSRGHALKLADPPPT 248

Query: 233 LAVPM----PCAETKSLGLIVDRPLKFRHLKLRKGLNLKRRHRNFLIKFGELPDVCPYNT 288
              P     P A    L   +DRP +F HL LR+GLNL+R HR++L++F  LP V P+  
Sbjct: 249 PPPPPLSLRPAATPDRL---MDRPRRFPHLPLRRGLNLRRAHRDYLLRFHSLPKVSPFEQ 305

Query: 289 SSEEFPKESLQAEKRACALVREVLGMMVEKQTLIDHLTHFRKDFGLSNNLRAMILRHPEL 348
             E    E L  E+RACA+VREVL M VEK+TL+DHLTHFRKDFGL N LRAM++RHPEL
Sbjct: 306 LDEGASLEML--ERRACAVVREVLAMTVEKRTLVDHLTHFRKDFGLPNRLRAMLVRHPEL 363

Query: 349 FYVSPKGIRNSVQLVEEFDEKGVLLKRDETLLIKEKLMELVREGKKMRRERRKQSI-FGN 407
           FYVS  G+R+SV LVE F + G LL  DE L+ +++L ELVREGK+MRR R+K  + F  
Sbjct: 364 FYVSVNGVRHSVFLVEAFGDDGRLLVEDEMLVGRDRLEELVREGKRMRRARKKGLLTFDG 423

Query: 408 CIDECCSDGGHDEVDELDNNDDDGFENLFESADSDLDYHFDDDGS---------FELGDH 458
             DE   D   +E   L+   DD F +LFE      D+    DG           ELG  
Sbjct: 424 DSDEDEDDEAAEEEGSLEV--DDEFGDLFEDGIIGEDWEEVGDGGRSEAYEEYDAELG-- 479

Query: 459 WENGELWTASSV 470
            E  E W   +V
Sbjct: 480 -ETEEFWVKKAV 490

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	482
TAIR|locus:2166305	494	emb1692 "embryo defective 1692	0.802	0.783	0.556	3.5e-107
TAIR|locus:4515103321	528	WTF1 "what's this factor?" [Ar	0.726	0.662	0.295	7.5e-41
TAIR|locus:2138738	395	AT4G08940 [Arabidopsis thalian	0.744	0.908	0.242	1.2e-16
TAIR|locus:2009230	390	AT1G06440 [Arabidopsis thalian	0.690	0.853	0.265	5.2e-15
TAIR|locus:504955534	409	RPD1 "ROOT PRIMORDIUM DEFECTIV	0.392	0.462	0.257	2.2e-13
TAIR|locus:2042561	415	AT2G31290 [Arabidopsis thalian	0.487	0.566	0.268	4.5e-13
TAIR|locus:2012981	470	AT1G71850 "AT1G71850" [Arabido	0.659	0.676	0.209	5e-12
TAIR|locus:2064940	387	WTF9 "AT2G39120" [Arabidopsis	0.659	0.821	0.233	7.1e-11
TAIR|locus:2207380	413	AT1G79120 [Arabidopsis thalian	0.651	0.760	0.206	9.2e-05

TAIR|locus:2166305 emb1692 "embryo defective 1692" [Arabidopsis thaliana (taxid:3702)]

 Score = 1024 (365.5 bits), Expect = 3.5e-107, Sum P(2) = 3.5e-107
 Identities = 217/390 (55%), Positives = 261/390 (66%)

Query:     1 MTQSLSVSSQNDTFFRCSFF-SSTPALIHRNSYSFHQASKKSRNISISVTCASPKIVRSP 59
             +TQ L  SS    F   SFF  S P  I R++ +   +SKK  ++S++++C++ KIVRSP
Sbjct:     5 LTQ-LVPSSPEKLFCFSSFFLPSIPLEIRRSNVTTKTSSKKLGSLSLNISCSAHKIVRSP 63

Query:    60 SLDKHIVTHNRTRFVQKLKTLLLSKPKHYIPIHILSKCRSYLSLPKLKSIRSMIHRYPMI 119
             SLD+H+V  NR RFVQKL TLLLSKPKHYIPI IL KCRSYL +    +I SMI RYP I
Sbjct:    64 SLDRHVVKQNRVRFVQKLNTLLLSKPKHYIPIEILYKCRSYLCIENPLAILSMIRRYPTI 123

Query:   120 FEVFAVPMPPTPLNATKSGYQQCVRLTPXXXXXXXQEISLKSAISNTLANKLQXXXXXXX 179
             FE+F  P P  P+NATK   Q CVRLT        QE++LKS IS+ LA KLQ       
Sbjct:   124 FELFTTPTPHLPMNATKPLSQLCVRLTSAASSLAMQELNLKSEISDKLATKLQKLLMLSS 183

Query:   180 XXXXXXXXXXXXXXXXGLLPNFRSRLCNDYPDKFKIVDTSYGRALELVSWDPQLAVPMPC 239
                             G  PNFRSRLCNDYPDKFK VDTSYGRALELVS DP+LA  MP 
Sbjct:   184 HRRLLLSKLVHIAPDFGFPPNFRSRLCNDYPDKFKTVDTSYGRALELVSSDPELANQMPS 243

Query:   240 AETKSLGLIVDRPLKFXXXXXXXXXXXXXXXXXFLIKFGELPDVCPYNTSSEEFPKESLQ 299
              E    GLIVDRPLKF                 FLIKF E PDVCPY  SS+    ES++
Sbjct:   244 PEVDR-GLIVDRPLKFKRLNLRRGLNLKRRHQGFLIKFRESPDVCPYKMSSDYLASESIE 302

Query:   300 AEKRACALVREVLGMMVEKQTLIDHLTHFRKDFGLSNNLRAMILRHPELFYVSPKGIRNS 359
             AEKRACA+VREVLG+ VEK+TLIDHLTHFRK+F L N LR +I+RHPELFYVS KG+R+S
Sbjct:   303 AEKRACAVVREVLGLTVEKRTLIDHLTHFRKEFSLPNKLRDLIVRHPELFYVSIKGMRDS 362

Query:   360 VQLVEEFDEKGVLLKRDETLLIKEKLMELV 389
             V LVE +++ G LL +DE L+I+E+L++L+
Sbjct:   363 VFLVEAYNDNGDLLDKDERLVIRERLIDLI 392

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

TAIR|locus:4515103321 WTF1 "what's this factor?" [Arabidopsis thaliana (taxid:3702)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 110/372 (29%), Positives = 175/372 (47%)

Query:    26 LIHRNSYSFHQASKKSRNISISVTCASPKIVRSPSLDKHIVTHNRTRFVQKLKTLLLSKP 85
             LI  N Y F   S+K+R + +    A+ K  +  + D  +    + + V  ++ +L+S+P
Sbjct:    50 LILGNKYGFWSTSRKTR-VVVEPVRAAVKRRKELTFDSVVQRDKKLKLVLNIRKILVSQP 108

Query:    86 KHYIPIHILSKCRSYLSLPKLKSIRSMIHRYPMIFEVFAVPMPPTPLNATKSGYQQCVRL 145
                + +  L K R  L L K +   +++ +YP +FE+             +  Y    ++
Sbjct:   109 DRMMSLRGLGKYRRDLGLKKRRRFIALLRKYPGVFEI-----------VEEGAYSLRFKM 157

Query:   146 TPXXXXXXXQEISLKSAISNTLANKLQXXXXXXXXXXXXXXXXXXXXXXXGLLPNFRSRL 205
             T         E+ +++ + + L  KL+                       GL   FR  +
Sbjct:   158 TSEAERLYLDEMRIRNELEDVLVVKLRKLVMMSIDKRILLEKISHLKTDLGLPLEFRDTI 217

Query:   206 CNDYPDKFKIVDTSYGRALELVSWDPQLAVPMP--------CAETKSLGLIVDRPLKFXX 257
             C  YP  F++V T  G ALEL  WDP+LAV             E++   LI+DRP KF  
Sbjct:   218 CQRYPQYFRVVPTPRGPALELTHWDPELAVSAAELSEDDNRTRESEERNLIIDRPPKFNR 277

Query:   258 XXXXXXXXXXXXXXXFLIKFGELPDVCPYNTSSEEFPKESLQAEKRACALVREVLGMMVE 317
                             + +F ++  + PY   S      +L+ EK AC ++ E+L +  E
Sbjct:   278 VKLPRGLNLSKSETRKISQFRDMQYISPYKDFSH-LRSGTLEKEKHACGVIHELLSLTTE 336

Query:   318 KQTLIDHLTHFRKDFGLSNNLRAMILRHPELFYVSPKGIRNSVQLVEEFDEKGVLLKRDE 377
             K+TL+DHLTHFR++F  S  LR M++RHP+LFYVS KG R+SV L E +     L+ +D 
Sbjct:   337 KRTLVDHLTHFREEFRFSQQLRGMLIRHPDLFYVSLKGERDSVFLREAY-RNSELIDKDP 395

Query:   378 TLLIKEKLMELV 389
               L+KEK+  LV
Sbjct:   396 LTLVKEKMRALV 407

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2138738 AT4G08940 [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 1.2e-16, P = 1.2e-16
 Identities = 94/388 (24%), Positives = 159/388 (40%)

Query:     5 LSVSSQN-DTFFRCSFFSSTPALIHRNSYSFHQASKKSRNISI-SVTCASPKIVRSPSLD 62
             +S SS N +  FR S FS T  LI +      +  KK  +    S+   S K+   P L+
Sbjct:    17 ISSSSPNPNPNFRTSPFS-TSFLITKTPDKLKKKRKKPESARTKSIQHESTKL---PHLE 72

Query:    63 KHIVTHNRTRFVQKLKTLLLSKPKHYIPIHILSKCRSYLSLPKLKSIRSMIHRYPMIFEV 122
               +      RF+ + K  +  +P+  + +    K    L  P+ + +   I ++P+IF+ 
Sbjct:    73 SLVSRDAHFRFLIRSKEFISKQPERILRLDDAGKLYRELGFPRGRKVTKFIPKHPLIFQT 132

Query:   123 FAVPMPPTPLNATKSGYQQCVRLTPXXXXXXXQEISLKSAISNTLANKLQXXXXXXXXXX 182
             +             S  +  +  T        +E  L  ++     N ++          
Sbjct:   133 YR-----------HSDGKIWLGFTEFMEDLLDEEKGLMESMELDRVNCVRKLLMMTKDKR 181

Query:   183 XXXXXXXXXXXXXGLLPNFRSRLCNDYPDKFKIVDTSYG-RALELVSWDPQLAVPMPCAE 241
                          G+  +FR R+   YPD F++V    G R LELV+WD  LAV    +E
Sbjct:   182 ILLSKIHHTRLLFGIPEDFRDRVAK-YPDYFRVVTGGDGNRVLELVNWDTNLAV----SE 236

Query:   242 TKSLGLIVD----RPLKFXXXXXXXXXXXXXXXXXFLIKFGELPDVCPYNTSSEEFPKES 297
              + L +I +    R  KF                   +     P V PY+    +    S
Sbjct:   237 LERLFMIDEDKAKRVFKFPVKHGKELELEEKDTRKLNL-LNTFPLVSPYS-DGWKLDVWS 294

Query:   298 LQAEKRACALVREVLGMMVEKQTLIDHLTHFRKDFGLSNNLRAMILRHPELFYVSPKGIR 357
             L+AEK    +V E L + +EK+  I H+  F+ +F L+     M+ +    FY++   + 
Sbjct:   295 LEAEKYRVGIVHEFLNLTLEKRASIHHIVEFKDEFSLTRQTYQMLKKQSMSFYLAGTEMN 354

Query:   358 NSVQLVEEFDEKGVLLKRDETLLIKEKL 385
              +V L + +DE GVL+ +D  ++  EKL
Sbjct:   355 WTVFLKDAYDENGVLVSKDPQVVFNEKL 382

GO:0009507 "chloroplast" evidence=ISM

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2009230 AT1G06440 [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 5.2e-15, P = 5.2e-15
 Identities = 97/365 (26%), Positives = 147/365 (40%)

Query:    44 ISISVTCASPKIV----RSPSLDKHIVTHNRTRFVQKLKTLLLSKPKHYIP---IHILSK 96
             I++  T  S + V    R P  +K +  +     V  ++ L L+ P    P   I  LS+
Sbjct:    19 INVRSTTTSAQYVASRSRDPVFEKLMDKYKNLLKVIAIQDLTLANPTADPPSLSIEFLSR 78

Query:    97 CRSYLSLPKLKSIRSMIHRYPMIFEVFAVPMPPTPLNATKSGYQQCVRLTPXXXXXXXQE 156
                 L L +     S + +YP IF V   P+   P          C RLT        QE
Sbjct:    79 LSQKLHLNR--GAASFLRKYPHIFHVLYDPVKAEPF---------C-RLTDVAMEISRQE 126

Query:   157 ISLKSAISNTLANKLQXXXXXXXXXXXXXXXXXXXXXXXGLLPNFRSRLCNDYPDKFKIV 216
                 +A  + + ++L                        GL  +F   + +  P  FK+ 
Sbjct:   127 ALAITATLSLVVDRLVRLLSMSISKSIPLRAVFKVWRELGLPDDFEDSVISKNPHLFKLS 186

Query:   217 D--TSYGRALELVSWDP-----QLAVPM-PCAETKSLGLIVDRP-LKFXXXXXXXXXXXX 267
             D   S    LELV  +      + AV      E       VDR  ++F            
Sbjct:   187 DGHESNTHILELVQEEEKRLEFEAAVEKWRVVECSKEDCSVDRTEIQFSFKHSYPPGMRL 246

Query:   268 XXXXXFLIK-FGELPDVCPYNTSSEEFPKES--LQAEKRACALVREVLGMMVEKQTLIDH 324
                    +K +  LP V PY     +    S  +  EKRA A+  E L + VEK   ++ 
Sbjct:   247 SKTFKAKVKEWQRLPYVGPYEDMVGKKKSRSGVMGIEKRAVAIAHEFLNLTVEKMVEVEK 306

Query:   325 LTHFRKDFGLSNNLRAMILRHPELFYVSPKGIRNSVQLVEEFDEKGVLLKRDETLLIKEK 384
             ++HFRK FG+  N+R + L HP +FYVS KG R++V L E + E+G L+  +     + K
Sbjct:   307 ISHFRKCFGIDLNIRDLFLDHPGMFYVSTKGKRHTVFLREAY-ERGRLIDPNPVYDARRK 365

Query:   385 LMELV 389
             L++LV
Sbjct:   366 LLDLV 370

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:504955534 RPD1 "ROOT PRIMORDIUM DEFECTIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
 Identities = 54/210 (25%), Positives = 98/210 (46%)

Query:   196 GLLPNFRSRLCNDYPDKFKIVDTSYGRA--LELVSWDPQLAVPMPCA-------ETKSLG 246
             GL  +F   +   +P  F+++D    R   +E+V  DP L++   CA       E ++ G
Sbjct:   178 GLPEDFEYSVILKHPQFFRLIDGEETRDKYIEIVEKDPNLSI---CAIERVREIEYRTKG 234

Query:   247 LIVDRPLKFXXXXXXXXXXXXXXXXXFLI-KFGELPDVCPYNTSSEEFPKESLQA----E 301
             +  +  ++F                   + K+  LP   PY   S  +   S++A    E
Sbjct:   235 IDAE-DVRFSFVVNFPPGFKIGKYFRIAVWKWQRLPYWSPYEDISG-YDLRSMEAQNRLE 292

Query:   302 KRACALVREVLGMMVEKQTLIDHLTHFRKDFGLSNNLRAMILRHPELFYVSPKGIRNSVQ 361
             KR+ A + E+L + VEK+  ++ + HFR    L   L+  +L+H  +FY+S +G    + 
Sbjct:   293 KRSVACIHELLSLTVEKKITLERIAHFRNVMNLPKKLKEFLLQHQGIFYISTRGNYGKLH 352

Query:   362 LV--EEFDEKGVLLKRDETLLIKEKLMELV 389
              V   E  ++G L++ ++  L + +L ELV
Sbjct:   353 TVFLREGYKRGELVEPNDVYLARRRLAELV 382

GO:0009507 "chloroplast" evidence=ISM

GO:0008285 "negative regulation of cell proliferation" evidence=IMP

GO:0010102 "lateral root morphogenesis" evidence=IMP

TAIR|locus:2042561 AT2G31290 [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 4.5e-13, P = 4.5e-13
 Identities = 67/250 (26%), Positives = 110/250 (44%)

Query:   144 RLTPXXXXXXXQEISLKSAISNTLANKLQXXXXXXXXXXXXXXXXXXXXXXXGLLPNFRS 203
             RLT        +E  +K      LA++L                        G   ++  
Sbjct:   103 RLTKPMMTLVEEEELVKDTQEPVLADRLAKLLMLSVNQRLNVVKLNEFKRSFGFPDDYVI 162

Query:   204 RLCNDYPDKFKIVDTSYGRA----LELVSWDPQLAVPMPCAETKSLGLIVDRPLKFXXXX 259
             R+   Y D F++V+ S GR     +EL+ W P+LAV    A  K  G     P       
Sbjct:   163 RIVPKYSDVFRLVNYS-GRKSSMEIELLLWKPELAVSAVEAAAKKCG---SEP----SFS 214

Query:   260 XXXXXXXXXXXXXFLIKFGELPDVCPYNTSSEEFPKESLQAEKRACALVREVLGMMVEKQ 319
                          F+ +F   P + PY    +   + S ++EKR+  LV E+L + + K+
Sbjct:   215 CSLPSTWTKPWERFM-EFNAFPYISPYEDHGD-LVEGSKESEKRSVGLVHELLSLTLWKK 272

Query:   320 TLIDHLTHFRKDFGLSNNLRAMILRHPELFYVSPKGIRNSVQLVEEFDEKGVLLKRDETL 379
               I  L+HF+++FGL   L  M+L+HP +FYV  K   ++V L E ++    L+ +D  +
Sbjct:   273 LSIVKLSHFKREFGLPEKLNGMLLKHPGIFYVGNKYQVHTVILREGYNGSE-LIHKDPLV 331

Query:   380 LIKEKLMELV 389
             ++K+K  EL+
Sbjct:   332 VVKDKFGELM 341

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2012981 AT1G71850 "AT1G71850" [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 73/348 (20%), Positives = 147/348 (42%)

Query:    54 KIVRSPSLDKHIVTHNRTRFVQKLKTLLLSKPKHYIPIHILSKCRSYLSLPKLKSIRSMI 113
             K VR   LD  +      R +  +K L+ S+P   +PI +++  +  L +P L+ I   I
Sbjct:    30 KFVRDRGLDHAVEREKNLRPLLSIKDLIRSEPAKSVPISVITSQKDSLRVP-LRPIE-FI 87

Query:   114 HRYPMIFEVFAVPMPPTPLNATKSGYQQCVRLTPXXXXXXXQE--ISLKSAISNTLANKL 171
               +P +F+ F     P  +     G    + LTP        E  +         LA++L
Sbjct:    88 RSFPSVFQEFL----PGGI-----GIHPHISLTPEILNHDADEQLVYGSETYKQGLADRL 138

Query:   172 QXXXXXXXXXXXXXXXXXXXXXXXGLLPNFRSRLCNDYPDKFKIVDTSY---GRALELVS 228
                                     GL  ++   +  ++PD F+++ +        LELV 
Sbjct:   139 LKLLMINRINKIPLEILDLLKWDLGLPKDYVETMVPEFPDYFRVIKSKLRGCSGELELVC 198

Query:   229 WDPQLAVPMPCAETKSL-------GLIVDRPLKFXXXXXXXXXXXXXXXXXFLIKFGELP 281
             W  + AV +   + ++L       G  +  P+KF                 ++  + +LP
Sbjct:   199 WSNEHAVSVLEKKARTLRKGEYTKGSAIAFPMKFSNGFVVDKKMKK-----WIDDWQKLP 253

Query:   282 DVCPYNTSSEEFPKESLQAEKRACALVREVLGMMVEKQTLIDHLTHFRKDFGLSNNLRAM 341
              + PY  +       S +++K A A++ E++ + V K+   D + H  +  GL +  + +
Sbjct:   254 YISPYENALH-LSATSDESDKWAAAVLHEIMNLFVSKKVEKDAILHLGEFMGLRSRFKRV 312

Query:   342 ILRHPELFYVSPKGIRNSVQLVEEFDEKGVLLKRDETLLIKEKLMELV 389
             +  HP +FY+S K +R    ++ +  ++G+L++ +E +  + + M+L+
Sbjct:   313 LHNHPGIFYLSSK-LRTHTVVLRDGYKRGMLIESNELVTSRNRYMKLM 359

GO:0005739 "mitochondrion" evidence=IDA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

TAIR|locus:2064940 WTF9 "AT2G39120" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 7.1e-11, P = 7.1e-11
 Identities = 79/338 (23%), Positives = 133/338 (39%)

Query:    57 RSPSLD--KHIVTHNRTRFVQKLKTLLLSKPKHYIPIHILSKCRSYLSLPKLKSIRSMIH 114
             R P  D  +HI+  ++ + V  LK  ++ +P   IPI  +SK      +     I   + 
Sbjct:    33 RDPYFDNIEHILRSSQLKSVVSLKNCIVQEPNRCIPISAISKKTRQFDVST--KIAHFLR 90

Query:   115 RYPMIFEVFAVPMPPTPLNATKSGYQQCVRLTPXXXXXXXQEISLKSAISNTLANKLQXX 174
             ++P IFE F  P    P            RLTP       QE  +    ++ L ++L+  
Sbjct:    91 KFPSIFEEFVGPEYNLPW----------FRLTPEATELDRQERVVYQTSADDLRDRLKKL 140

Query:   175 XXXXXXXXXXXXXXXXXXXXXGLLPNFRSRLCNDYPDKFKIVDTS---YGRALELVSWDP 231
                                  GL  ++      +    F+ VD      G A++    D 
Sbjct:   141 ILMSKDNVLPLSIVQGMKWYLGLPDDYLQFPDMNLDSSFRFVDMEDGVKGLAVDYNGGDK 200

Query:   232 QLAVPMPCAETKSLGLIVDRPLKFXXXXXXXXXXXXXXXXXFLIKFGELPDVCPYNTSSE 291
              L+V    A  K  G +    ++F                 +L++F +LP V PY+  S 
Sbjct:   201 VLSVLQKNAMKKRRGEVSLEEIEFPLFPSKGCRLRVKIED-WLMEFQKLPYVSPYDDYSC 259

Query:   292 EFPKESLQAEKRACALVREVLGMMVEKQTLIDHLTHFRKDFGLSNNLRAMILRHPELFYV 351
               P   + AEKR    + E+L + VE       L   +K FGL   +     RHP++FY+
Sbjct:   260 LDPSSDI-AEKRVVGFLHELLCLFVEHSAERKKLLCLKKHFGLPQKVHKAFERHPQIFYL 318

Query:   352 SPKGIRNSVQLVEEFDEKGVLLKRDETLLIKEKLMELV 389
             S K    +  L E + +K  + +    L +++K ++L+
Sbjct:   319 SMKNKTCTAILREPYRDKASV-ETHPVLGVRKKYIQLM 355

GO:0005739 "mitochondrion" evidence=IDA

GO:0000373 "Group II intron splicing" evidence=IMP

GO:0003723 "RNA binding" evidence=IDA

GO:0017004 "cytochrome complex assembly" evidence=IMP

TAIR|locus:2207380 AT1G79120 [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 9.2e-05, P = 9.2e-05
 Identities = 72/349 (20%), Positives = 137/349 (39%)

Query:    57 RSPSLDKHIVTHNRTRFVQKLKTLLLSKPKHYIPIHILSKCRSYLSLPKLKSIRSMIHRY 116
             R   LDK I  + +   + +LK+++ ++ KH     +L     ++      ++ + I +Y
Sbjct:    64 RVHDLDKAIDLNKKPSLILQLKSIIQAQ-KH--GSLLLRDLEKHVGFVHKWNLMAAIEKY 120

Query:   117 PMIFEVFAVPMPPTPLNATKSGYQQCVRLTPXXXXXXXQEISLKSAISNTLANKLQXXXX 176
             P IF V      P P           V LT        +E     ++   L N L+    
Sbjct:   121 PTIFYVGGGHKEP-PF----------VMLTEKAKKIAAEESEATESMEPILVNNLRKLLM 169

Query:   177 XXXXXXXXXXXXXXXXXXXGLLPNFRSRLCNDYPDKF--KIVDTSYGRALELVSWDPQLA 234
                                GL  +F+S L   Y + F  K+++      LE  +WD  LA
Sbjct:   170 MSVDCRVPLEKVEFIQSAMGLPQDFKSTLIPKYTEFFSLKVINGKVNLVLE--NWDSSLA 227

Query:   235 VPMP----CAE--TKSLG----LIVDRPLKFXXXXXXXXXX--XXXXXXXFLIKFGELPD 282
             +         E  ++S+G    + + +   F                   +L +F +   
Sbjct:   228 ITAREDRLSREGFSESVGDRKRVRITKDGNFLGRNAFKISFPPGFRPNASYLEEFEKWQK 287

Query:   283 V---CPYNTSSEEFPKESLQAEKRACALVREVLGMMVEKQTLIDHLTHFRKDFGLSNNLR 339
             +    PY  ++  F     +A KR  A++ E+L + +EK+     L  F  ++ L + L 
Sbjct:   288 MEFPSPY-LNARRFDAADPKARKRVVAVLHELLSLTMEKRVTCAQLDAFHSEYLLPSRLI 346

Query:   340 AMILRHPELFYVSPKGIRNSVQLVEEFDEKGVLLKRDETLLIKEKLMEL 388
               +++H  +FY++ KG R +V L + +     L+++   LL  ++ + L
Sbjct:   347 LCLIKHQGIFYITNKGARGTVFLKDAYAGSN-LIEKCPLLLFHDRFVAL 394


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.135   0.409    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      482       404   0.00099  117 3  11 22  0.37    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  619 (66 KB)
  Total size of DFA:  267 KB (2141 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  28.82u 0.12s 28.94t   Elapsed:  00:00:01
  Total cpu time:  28.82u 0.12s 28.94t   Elapsed:  00:00:01
  Start:  Tue May 21 00:02:16 2013   End:  Tue May 21 00:02:17 2013

GO:0005739 "mitochondrion" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.19	LOW CONFIDENCE prediction!
3rd Layer	3.4.19.12	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00033543001 SubName- Full=Chromosome chr5 scaffold_67, whole genome shotgun sequence; (531 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	482
pfam11955	332	pfam11955, PORR, Plant organelle RNA recognition d	1e-110

>gnl|CDD|221338 pfam11955, PORR, Plant organelle RNA recognition domain

 Score =  329 bits (845), Expect = e-110
 Identities = 152/346 (43%), Positives = 207/346 (59%), Gaps = 18/346 (5%)

Query: 56  VRSPSLDKHIVTHNRTRFVQKLKTLLLSKPKHYIPIHILSKCRSYLSLPKLKSIRSMIHR 115
           VR P+LDK +    R R V +LK LLLS+P H +P+  LSK R  L LP+     + + +
Sbjct: 2   VRDPALDKAVEREKRLRLVLRLKDLLLSQPDHSLPLRDLSKLRRQLGLPRG--ALAFLRK 59

Query: 116 YPMIFEVFAVPMPPTPLNATKSGYQQCVRLTPAAAALAAQEISLKSAISNTLANKLQKLL 175
           YP IFE+F  P               CVRLTP A  L A+E  L  +    L ++L+KLL
Sbjct: 60  YPSIFELFRHPSDSVL----------CVRLTPKAEDLLAEEARLLESSEPDLVDRLRKLL 109

Query: 176 MLSSHRRLLLSKLVHLASDLGLLPNFRSRLCNDYPDKFKIVDTSYGRALELVSWDPQLAV 235
           M+S  RRL L KL HL  DLGL  +FR  L   YPD F++VD   G  LELVSWDP+LAV
Sbjct: 110 MMSKDRRLPLEKLAHLRRDLGLPDDFRDSLVPKYPDYFRLVDEDGGDGLELVSWDPELAV 169

Query: 236 PMP---CAETKSLGLIVDRPLKFRHLKLRKGLNLKRRHRNFLIKFGELPDVCPYNTSSEE 292
                        G  VDR   F  +K   G  L+++ R  L ++ +LP + PY  +S  
Sbjct: 170 SALEKRREIEDRGGDRVDRRFAFP-VKFPPGFKLRKKFREKLEEWQKLPYISPYEDASHL 228

Query: 293 FPKESLQAEKRACALVREVLGMMVEKQTLIDHLTHFRKDFGLSNNLRAMILRHPELFYVS 352
            P  S +AEKRA A++ E+L + VEK+T +DHLTHFRK+FGL   LR ++LRHP +FY+S
Sbjct: 229 DP-GSDEAEKRAVAVLHELLSLTVEKRTEVDHLTHFRKEFGLPQKLRKVLLRHPGIFYLS 287

Query: 353 PKGIRNSVQLVEEFDEKGVLLKRDETLLIKEKLMELVREGKKMRRE 398
            KG R++V L E +D +G L+++D  +L +EKL+EL+ EGK+ R+ 
Sbjct: 288 TKGKRHTVFLREAYD-RGELVEKDPLVLAREKLLELMLEGKRERKR 332

This family, which was previously known as DUF860, has been shown to be a component of group II intron ribonucleoprotein particles in maize chloroplasts. The domain is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. All of the members are predicted to localise to mitochondria or chloroplasts. It seems likely that most PORR proteins function in organellar RNA metabolism. Length = 332

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	482
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	100.0
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	98.59
PF10446	458	DUF2457: Protein of unknown function (DUF2457); In	86.91

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=100.00  E-value=1.1e-112  Score=866.75  Aligned_cols=328  Identities=45%  Similarity=0.749  Sum_probs=312.8

Q ss_pred             cccCcchhhHHHHhcchhHHHHHHHHHhcCCCCeechhhhhhccccCCCCCcchHhHHHhhCCceeEEeccCCCCCCCCC
Q 045479           55 IVRSPSLDKHIVTHNRTRFVQKLKTLLLSKPKHYIPIHILSKCRSYLSLPKLKSIRSMIHRYPMIFEVFAVPMPPTPLNA  134 (482)
Q Consensus        55 ~vRD~~LD~~v~rek~lr~v~~lk~lI~s~P~~~lpl~~L~k~r~~LgL~~~~~v~~FlrrYP~iF~~f~~p~~~~P~~~  134 (482)
                      |+||++||++|+++|++++|++|+++|+++|+++|||+.|++++++|||+ ++++++||+|||+||++|.++..      
T Consensus         1 w~rd~~lD~~i~~~k~l~~v~~l~~~i~~~p~~~~pl~~l~k~~~~L~l~-~~~~~~flrkyP~iF~~~~~~~~------   73 (335)
T PF11955_consen    1 WVRDPYLDKVIEREKRLRFVLRLKDLILSQPSHSLPLRDLSKLRRQLGLK-PRKVSRFLRKYPSIFEVFQHPSR------   73 (335)
T ss_pred             CCCchhHHHHHHhhhhHHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCC-cccHHHHHHhCCceEEEeccCCC------
Confidence            99999999999999999999999999999999999999999999999995 47999999999999999997543      


Q ss_pred             CCCCccceeecCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCCceechhhHHHhhhhCCCCchhhhccccCCCCCeE
Q 045479          135 TKSGYQQCVRLTPAAAALAAQEISLKSAISNTLANKLQKLLMLSSHRRLLLSKLVHLASDLGLLPNFRSRLCNDYPDKFK  214 (482)
Q Consensus       135 ~~~~~~~~vrLT~~A~~L~~eE~~v~~~~e~~~v~rLrKLLMMS~~rrLpL~kL~~lr~dLGLP~DF~~~lv~~yPd~Fr  214 (482)
                          +++||+||++|++|++||++|++++++++|+||+||||||++++|||++|+|++||||||+||+++++++|||+|+
T Consensus        74 ----~~~~~~LT~~a~~L~~eE~~~~~~~e~~~v~rL~KLLMMS~~~rlpL~ki~~l~~dLGLP~Df~~~lv~~yP~~Fr  149 (335)
T PF11955_consen   74 ----SVPWFRLTPEAEDLLREERRVREEMEPDLVERLRKLLMMSKDRRLPLSKIAHLRRDLGLPDDFRDSLVPKYPDYFR  149 (335)
T ss_pred             ----CCceEEeCHHHHHHHHHHHHHHHhChHHHHHHHHHHhccCCCCcccHHHHHHHHHHcCCChhhccchhhhCCCCcE
Confidence                4669999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEec-CCCceEEEeecCCCCccChhhhhcc-----cCCccccCCCCCcccccccCcccchHHHHHHHhhccCCCCCCCCC
Q 045479          215 IVDT-SYGRALELVSWDPQLAVPMPCAETK-----SLGLIVDRPLKFRHLKLRKGLNLKRRHRNFLIKFGELPDVCPYNT  288 (482)
Q Consensus       215 vv~~-~~g~~LeLv~Wd~~LAVs~~e~r~~-----~~~~~i~~P~~Fp~~~~~rGf~l~k~~r~~L~~fQkLPYiSPYed  288 (482)
                      ||+. +++.+||||+|||+||||++|.+..     ..+..+..|++|| ++||+||++++++++||++||+|||+|||+|
T Consensus       150 vv~~~~~~~~LeLv~Wd~~LAvs~~E~~~~~~~~~~~~~~~~~~~~Fp-~~fp~G~~l~k~~~~~l~~fQ~lPy~SPYed  228 (335)
T PF11955_consen  150 VVDLEDGGRYLELVSWDPELAVSALEKRAEKEYREKREDGFDRPLAFP-VSFPKGFRLKKKFREWLEEFQKLPYISPYED  228 (335)
T ss_pred             EeecCCCCCEEEEeecCCccCcCccchhhhhccccccccccCCceeee-ecCCCCccccHHHHHHHHHHhcCCCCCCCCC
Confidence            9994 4458999999999999999988643     3456788999999 9999999999999999999999999999999


Q ss_pred             CCCCCCcCChhhhHHHHHHHHHHhhcchhhHhhhhHHHhhHHhhCCcHHHHHHHhhCCCcEEEeecCCeeeEEeecccCC
Q 045479          289 SSEEFPKESLQAEKRACALVREVLGMMVEKQTLIDHLTHFRKDFGLSNNLRAMILRHPELFYVSPKGIRNSVQLVEEFDE  368 (482)
Q Consensus       289 ~~~~l~~~S~eaEKRaVaVlHELLSLTveKr~~v~~L~hFr~efgLp~k~~~~l~RHPgIFYvS~Kg~~~TVfLREAY~~  368 (482)
                      ++ +++++|+++|||||||+||||||||||||++++|+|||+|||||++|+++|+|||||||||+||+|+||||||||+ 
T Consensus       229 ~~-~l~~~s~~~EKRaVaVlHElLSLTveKr~~~~~L~~fr~ef~lp~k~~~~l~rHPgIFYvS~kg~~~TVfLrEAY~-  306 (335)
T PF11955_consen  229 AS-HLDPGSDEAEKRAVAVLHELLSLTVEKRTEVDHLTHFRKEFGLPQKFRRLLLRHPGIFYVSLKGKRHTVFLREAYD-  306 (335)
T ss_pred             cc-CCCCCChHHHhHHHHHHHHHHHhhhhhhccHHHHHHHHHHhCCcHHHHHHHHhCCCeEEEeccCCceEEEEeeccC-
Confidence            98 6999999999999999999999999999999999999999999999999999999999999999999999999997 


Q ss_pred             CCCccccChhhHHHHHHHHHHHHhHHHH
Q 045479          369 KGVLLKRDETLLIKEKLMELVREGKKMR  396 (482)
Q Consensus       369 ~g~LIek~Pl~~iReK~~~Lm~~g~~~r  396 (482)
                      +|+||||||++.+|+||++||.+|+++|
T Consensus       307 ~~~Liek~Pl~~~r~k~~~Lm~~~~~~~  334 (335)
T PF11955_consen  307 GGELIEKHPLVVIREKFLELMQEGRRKR  334 (335)
T ss_pred             CCCCCCCCchHHHHHHHHHHHhhccccc
Confidence            5799999999999999999999998765

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=98.59  E-value=2.1e-07  Score=96.18  Aligned_cols=141  Identities=21%  Similarity=0.392  Sum_probs=108.0

Q ss_pred             HHHhhhHHHHHHHHHHHhccCCceechhhHHHhhhhCCCCchhhhccccCCCCCeEEEecCCCceEEEeecCCCCccChh
Q 045479          159 LKSAISNTLANKLQKLLMLSSHRRLLLSKLVHLASDLGLLPNFRSRLCNDYPDKFKIVDTSYGRALELVSWDPQLAVPMP  238 (482)
Q Consensus       159 v~~~~e~~~v~rLrKLLMMS~~rrLpL~kL~~lr~dLGLP~DF~~~lv~~yPd~Frvv~~~~g~~LeLv~Wd~~LAVs~~  238 (482)
                      +..+.....|.+|+.+|--++++.||++.+...+..|||+.-=..+++.+||..|.+...+..                 
T Consensus        11 i~~~k~l~~v~~l~~~i~~~p~~~~pl~~l~k~~~~L~l~~~~~~~flrkyP~iF~~~~~~~~-----------------   73 (335)
T PF11955_consen   11 IEREKRLRFVLRLKDLILSQPSHSLPLRDLSKLRRQLGLKPRKVSRFLRKYPSIFEVFQHPSR-----------------   73 (335)
T ss_pred             HHhhhhHHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCcccHHHHHHhCCceEEEeccCCC-----------------
Confidence            444556678999999999999999999999999999999533335789999999999764211                 


Q ss_pred             hhhcccCCccccCCCCCcccccccCcccchHHHHHHHhhccCCCCCCCCCCCCCCCcCChhhhHHHHHHHHHHhhcchhh
Q 045479          239 CAETKSLGLIVDRPLKFRHLKLRKGLNLKRRHRNFLIKFGELPDVCPYNTSSEEFPKESLQAEKRACALVREVLGMMVEK  318 (482)
Q Consensus       239 e~r~~~~~~~i~~P~~Fp~~~~~rGf~l~k~~r~~L~~fQkLPYiSPYed~~~~l~~~S~eaEKRaVaVlHELLSLTveK  318 (482)
                                  .+         .-+++.....+-+.+            -.. +   -.+.|--+|..+.-||.|+..+
T Consensus        74 ------------~~---------~~~~LT~~a~~L~~e------------E~~-~---~~~~e~~~v~rL~KLLMMS~~~  116 (335)
T PF11955_consen   74 ------------SV---------PWFRLTPEAEDLLRE------------ERR-V---REEMEPDLVERLRKLLMMSKDR  116 (335)
T ss_pred             ------------CC---------ceEEeCHHHHHHHHH------------HHH-H---HHhChHHHHHHHHHHhccCCCC
Confidence                        11         112344444432211            000 0   0145678899999999999999


Q ss_pred             HhhhhHHHhhHHhhCCcHHHHH-HHhhCCCcEEEee
Q 045479          319 QTLIDHLTHFRKDFGLSNNLRA-MILRHPELFYVSP  353 (482)
Q Consensus       319 r~~v~~L~hFr~efgLp~k~~~-~l~RHPgIFYvS~  353 (482)
                      |+.+++|.|++.+||||..|+. ++-+||+.|=|..
T Consensus       117 rlpL~ki~~l~~dLGLP~Df~~~lv~~yP~~Frvv~  152 (335)
T PF11955_consen  117 RLPLSKIAHLRRDLGLPDDFRDSLVPKYPDYFRVVD  152 (335)
T ss_pred             cccHHHHHHHHHHcCCChhhccchhhhCCCCcEEee
Confidence            9999999999999999999988 5999999999987

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins

Probab=86.91  E-value=0.54  Score=50.94  Aligned_cols=8  Identities=38%  Similarity=0.875  Sum_probs=5.7

Q ss_pred             cccceeee
Q 045479          460 ENGELWTA  467 (482)
Q Consensus       460 ~~~~~~~~  467 (482)
                      ..-+||+-
T Consensus       120 sd~~~WtP  127 (458)
T PF10446_consen  120 SDYEFWTP  127 (458)
T ss_pred             ccceeecc
Confidence            45579987

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	482
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-15

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 79.1 bits (194), Expect = 1e-15
 Identities = 80/506 (15%), Positives = 156/506 (30%), Gaps = 142/506 (28%)

Query: 8   SSQNDTFFRCSFFSSTPALIHRNSYSF------HQASKKSRNISISVTCASPKIVRSPSL 61
           S Q +   +  F       + R +Y F       +  + S    + +         +   
Sbjct: 73  SKQEEMVQK--FVEE----VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 62  DKHIVTHNRTRFVQKLKTLLLS-KPKHYIPIHILSKC-RSYLSLPKLKSIRSMIHRYPMI 119
            K+ V+  R +   KL+  LL  +P   + I  +    +++++L    S +       M 
Sbjct: 127 AKYNVS--RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK---MD 181

Query: 120 FEVFAVPM-----PPTPLNATKSGYQQ--CVRLTPAAAALAAQEISLKSAISNTLANKLQ 172
           F++F + +     P T L        Q    ++ P   + +    ++K  I +++  +L+
Sbjct: 182 FKIFWLNLKNCNSPETVLEM-----LQKLLYQIDPNWTSRSDHSSNIKLRI-HSIQAELR 235

Query: 173 KLLMLSSHRRLLL-------SKLVHLASDLGLLPNFRSRLCNDYPDKFKIVDTSYGRALE 225
           +LL    +   LL       +K  + A +L          C       KI+ T+  R   
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWN-AFNLS---------C-------KILLTT--R--- 273

Query: 226 LVSWDPQLAVPMPCAETKSLGLIVDRPLKFRHLKLRKGLNLKRRHRNFLIKFGELPDVCP 285
                 Q+   +  A T  + L                L      ++ L+K+        
Sbjct: 274 ----FKQVTDFLSAATTTHISLD----------HHSMTLT-PDEVKSLLLKY-------- 310

Query: 286 YNTSSEEFPKESLQAEKRACALVREVLGMMVE-----KQTLIDHLTHFRKDFGLSNNLRA 340
            +   ++ P+E L    R  +++ E +   +      K    D LT   +     N L  
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS--LNVLEP 368

Query: 341 MILRH--------PELFYVSPK--------GIRNSVQLVEEFDEKGVLLKRD---ETLLI 381
              R         P   ++            I++ V +V     K  L+++     T+ I
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428

Query: 382 KEKLMELVREGKKMRRERRKQSIFGNCIDE----CCSDGGHDEVDELDN----------- 426
               +EL  + +      R        +D        D        LD            
Sbjct: 429 PSIYLELKVKLENEYALHRS------IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482

Query: 427 -----NDDDGFENLFESADSDLDYHF 447
                     F  +F      LD+ F
Sbjct: 483 NIEHPERMTLFRMVF------LDFRF 502

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00