Citrus Sinensis ID: 045490

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
MEAGTPQSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGEDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRKGQNAGYLLNTKTYRNFWLLA
cccccccccEEEEEEcccHHHHHHHHHHHHHccccccEEEEEEEEccccccccccccccccccccccccccccccHHHHcccccHHHHHHHHHHHHHHccccEEEEEEEEEEcccHHHHHHHHHHHccccEEEEEcccccccHHHHHccccccccccccccccccccccccccEEEEEccccccEEEEEccccccEEEcc
cccccccccEEEEEEcccHHHHHHHHHHHHHHHccccEEEEEEEccccccccccccccccccccccccccccHHHHHHHccccHHHHHHHHHHHHHHccccEEEEEEEEEccccccHHHHHHHHHHccccEEEEccccccHHHHHHHHcccccccccccccHHHHHHHcccccEEEEEEcccccEEEEEEcccccEEEcc
meagtpqsrkvmviadptreSAGALQYALSHVLLEEDELVLLhvdtpnswknpfitflrkpsnsqyttpaslssssegaaapggeDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRRSLSNAILGYrraggslrgskgvdtAEYLIQNSkcncvgvqrkgqnagyllnTKTYRNFWLLA
meagtpqsrkvmvIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYttpaslssssegAAAPGGEDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRRSLSNAILGYrraggslrgskGVDTAEYLIQNSKCNCVGVqrkgqnagyllntktyrnfwlla
MEAGTPQSRKVMVIADPTRESAGALQYALShvlleedelvllhvdTPNSWKNPFITFLRKPSNSQYTTpaslssssegaaapggeDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRKGQNAGYLLNTKTYRNFWLLA
*********************AGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLR*****************************************KLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRKGQNAGYLLNTKTYRNFWLL*
************VIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRK******************AAAPGGEDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRA*********VDTAEYLIQNSKCNCVGVQRKGQ****LLNTKTYRNFWLLA
********RKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPS********************GGEDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRKGQNAGYLLNTKTYRNFWLLA
*******SRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPN*********************************PGGEDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLR**KGVDTAEYLIQNSKCNCVGVQRKGQNAGYLLNTKTYRNFWLLA
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEAGTPQSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGEDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRKGQNAGYLLNTKTYRNFWLLA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query200
356512568211 PREDICTED: uncharacterized protein LOC10 0.99 0.938 0.592 3e-66
356528383216 PREDICTED: uncharacterized protein LOC10 0.965 0.893 0.611 7e-65
449432492215 PREDICTED: uncharacterized protein LOC10 0.98 0.911 0.576 9e-65
147769682257 hypothetical protein VITISV_027847 [Viti 0.975 0.758 0.608 7e-63
296083742199 unnamed protein product [Vitis vinifera] 0.975 0.979 0.608 1e-62
225433296197 PREDICTED: uncharacterized protein LOC10 0.975 0.989 0.608 1e-62
255574859200 conserved hypothetical protein [Ricinus 0.975 0.975 0.6 2e-62
297790486219 universal stress protein family protein 0.975 0.890 0.580 4e-61
15235706219 universal stress protein (USP) family pr 0.975 0.890 0.571 2e-60
157849746220 universal stress protein family protein 0.975 0.886 0.582 7e-59
>gi|356512568|ref|XP_003524990.1| PREDICTED: uncharacterized protein LOC100804720 [Glycine max] Back     alignment and taxonomy information
 Score =  256 bits (654), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 118/199 (59%), Positives = 156/199 (78%), Gaps = 1/199 (0%)

Query: 3   AGTPQSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPS 62
           A   ++RKVMV+ADPTRESAGALQYAL+H ++E+DEL+LLHV+ P+SW++   TFL+ PS
Sbjct: 13  ASAQEARKVMVVADPTRESAGALQYALAHAVIEQDELILLHVENPSSWRHTISTFLKMPS 72

Query: 63  NSQYTTPASLSSSSEGAAAPGGEDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILS 122
               TT +        AA   G DFLEEMK AC V++PK++V V KV T+  +KA+ ILS
Sbjct: 73  LGSSTTASLDLGGGGAAADGEGFDFLEEMKHACRVSQPKMKVRVMKVETDGRDKASTILS 132

Query: 123 QSTAHGVDLLIIGQRRSLSNAILGYRR-AGGSLRGSKGVDTAEYLIQNSKCNCVGVQRKG 181
           QS  HGVD+++IGQ+R++++A+LGY+R AGGS++G K +DTAEYLIQNS C CV VQRKG
Sbjct: 133 QSKTHGVDVVVIGQKRNITSALLGYKRPAGGSMKGVKAIDTAEYLIQNSSCTCVSVQRKG 192

Query: 182 QNAGYLLNTKTYRNFWLLA 200
           QN G++LN+KT+RNFWLLA
Sbjct: 193 QNGGFVLNSKTHRNFWLLA 211

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356528383|ref|XP_003532783.1| PREDICTED: uncharacterized protein LOC100804438 [Glycine max] Back     alignment and taxonomy information
>gi|449432492|ref|XP_004134033.1| PREDICTED: uncharacterized protein LOC101222608 isoform 1 [Cucumis sativus] gi|449527349|ref|XP_004170674.1| PREDICTED: uncharacterized protein LOC101227940 isoform 1 [Cucumis sativus] Back     alignment and taxonomy information
>gi|147769682|emb|CAN67691.1| hypothetical protein VITISV_027847 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296083742|emb|CBI23731.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225433296|ref|XP_002282334.1| PREDICTED: uncharacterized protein LOC100247798 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255574859|ref|XP_002528336.1| conserved hypothetical protein [Ricinus communis] gi|223532204|gb|EEF34008.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|297790486|ref|XP_002863128.1| universal stress protein family protein [Arabidopsis lyrata subsp. lyrata] gi|297308962|gb|EFH39387.1| universal stress protein family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15235706|ref|NP_193081.1| universal stress protein (USP) family protein [Arabidopsis thaliana] gi|4584550|emb|CAB40780.1| hypothetical protein [Arabidopsis thaliana] gi|7268048|emb|CAB78387.1| hypothetical protein [Arabidopsis thaliana] gi|332657880|gb|AEE83280.1| universal stress protein (USP) family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|157849746|gb|ABV89656.1| universal stress protein family protein [Brassica rapa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query200
TAIR|locus:2142130219 AT4G13450 "AT4G13450" [Arabido 0.985 0.899 0.533 1.2e-49
TAIR|locus:2044274165 MRH6 "AT2G03720" [Arabidopsis 0.545 0.660 0.350 8.9e-18
TAIR|locus:2178920285 AT5G17390 "AT5G17390" [Arabido 0.565 0.396 0.301 3.1e-15
TAIR|locus:2097735274 AT3G03290 "AT3G03290" [Arabido 0.565 0.412 0.267 1.6e-13
TAIR|locus:2033245223 AT1G69080 "AT1G69080" [Arabido 0.535 0.479 0.306 5.2e-10
TAIR|locus:2194824213 AT1G44760 "AT1G44760" [Arabido 0.5 0.469 0.304 1.2e-09
TAIR|locus:2142130 AT4G13450 "AT4G13450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 113/212 (53%), Positives = 136/212 (64%)

Query:     3 AGTPQSRKVMVIADPTRESAGALQYALSXXXXXXXXXXXXXXXTPN-SWKNPFITFLRKP 61
             + TPQSRK+MVIADPTRESA ALQYALS                   SWKN F +FLR P
Sbjct:     9 SSTPQSRKIMVIADPTRESAAALQYALSHAVLEQDELILVHIENSGGSWKNAFSSFLRLP 68

Query:    62 SN-----------SQYTTXXXXXXXXXXXXXXXXXD--FLEEMKQACEVAKPKLRVHVEK 108
             S+           S  TT                 D  FLE+MK+ CE+A+PK+RVH E 
Sbjct:    69 SSISSSSSGSSPASNGTTTASNAAANALASEIGQGDGNFLEQMKRICEIAQPKVRVHTEC 128

Query:   109 VHTESGNKAAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYLIQ 168
             +  + G KA  IL      GVD++IIGQRR++S+++LG RR GGSLRGSKGVDTAEYLI+
Sbjct:   129 IAID-GVKATAILLHGDKLGVDVIIIGQRRTISSSLLGTRRPGGSLRGSKGVDTAEYLIE 187

Query:   169 NSKCNCVGVQRKGQNAGYLLNTKTYRNFWLLA 200
             NSKC CVGV +KGQN GY+LNTKT++NFWLLA
Sbjct:   188 NSKCTCVGVTKKGQNGGYVLNTKTHKNFWLLA 219
GO:0003674 "molecular_function" evidence=ND
GO:0005739 "mitochondrion" evidence=ISM
GO:0009827 "plant-type cell wall modification" evidence=RCA
GO:0009860 "pollen tube growth" evidence=RCA
GO:0048610 "cellular process involved in reproduction" evidence=RCA
GO:0048868 "pollen tube development" evidence=RCA
TAIR|locus:2044274 MRH6 "AT2G03720" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2178920 AT5G17390 "AT5G17390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2097735 AT3G03290 "AT3G03290" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2033245 AT1G69080 "AT1G69080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2194824 AT1G44760 "AT1G44760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00020368001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (197 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query200
cd00293130 cd00293, USP_Like, Usp: Universal stress protein f 2e-14
pfam00582139 pfam00582, Usp, Universal stress protein family 3e-13
cd01989146 cd01989, STK_N, The N-terminal domain of Eukaryoti 8e-06
COG0589154 COG0589, UspA, Universal stress protein UspA and r 1e-04
>gnl|CDD|238182 cd00293, USP_Like, Usp: Universal stress protein family Back     alignment and domain information 
 Score = 66.6 bits (163), Expect = 2e-14
 Identities = 39/163 (23%), Positives = 61/163 (37%), Gaps = 38/163 (23%)

Query: 10  KVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTP 69
           +++V  D + ES  AL++A         ELVLLHV  P                     P
Sbjct: 1   RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDP---------------------P 39

Query: 70  ASLSSSSEGAAAPGGEDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGV 129
            S ++             LE +++A   A  K+   V       G+ A  IL  +   G 
Sbjct: 40  PSSAAELAELLEEEARALLEALREALAEAGVKVETVV-----LEGDPAEAILEAAEELGA 94

Query: 130 DLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKC 172
           DL+++G R        G       L GS     AE +++++ C
Sbjct: 95  DLIVMGSR--------GRSGLRRLLLGS----VAERVLRHAPC 125

The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity. Length = 130
>gnl|CDD|216006 pfam00582, Usp, Universal stress protein family Back     alignment and domain information
>gnl|CDD|238947 cd01989, STK_N, The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information
>gnl|CDD|223662 COG0589, UspA, Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 200
PRK15005144 universal stress protein F; Provisional 99.92
PRK15456142 universal stress protein UspG; Provisional 99.91
cd01989146 STK_N The N-terminal domain of Eukaryotic Serine T 99.9
PRK15118144 universal stress global response regulator UspA; P 99.9
PRK09982142 universal stress protein UspD; Provisional 99.89
PRK10116142 universal stress protein UspC; Provisional 99.86
cd01988132 Na_H_Antiporter_C The C-terminal domain of a subfa 99.85
PF00582140 Usp: Universal stress protein family; InterPro: IP 99.84
PRK11175 305 universal stress protein UspE; Provisional 99.83
cd01987124 USP_OKCHK USP domain is located between the N-term 99.82
PRK11175305 universal stress protein UspE; Provisional 99.77
COG0589154 UspA Universal stress protein UspA and related nuc 99.71
cd00293130 USP_Like Usp: Universal stress protein family. The 99.7
PRK12652 357 putative monovalent cation/H+ antiporter subunit E 99.54
PRK10490 895 sensor protein KdpD; Provisional 99.17
COG2205 890 KdpD Osmosensitive K+ channel histidine kinase [Si 99.03
cd0198486 AANH_like Adenine nucleotide alpha hydrolases supe 98.04
PLN03159 832 cation/H(+) antiporter 15; Provisional 97.56
PLN03159832 cation/H(+) antiporter 15; Provisional 97.06
TIGR02432189 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t 96.87
PF01171182 ATP_bind_3: PP-loop family; InterPro: IPR011063 Th 96.34
cd01992185 PP-ATPase N-terminal domain of predicted ATPase of 95.87
PRK12342254 hypothetical protein; Provisional 95.76
PRK03359256 putative electron transfer flavoprotein FixA; Revi 95.26
PF01012164 ETF: Electron transfer flavoprotein domain; InterP 94.8
cd01993185 Alpha_ANH_like_II This is a subfamily of Adenine n 94.43
COG2086260 FixA Electron transfer flavoprotein, beta subunit 93.67
cd01985181 ETF The electron transfer flavoprotein (ETF) serve 93.42
COG0037298 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle 92.78
PF02601 319 Exonuc_VII_L: Exonuclease VII, large subunit; Inte 90.62
PRK10696258 tRNA 2-thiocytidine biosynthesis protein TtcA; Pro 90.08
COG0299200 PurN Folate-dependent phosphoribosylglycinamide fo 89.0
TIGR00268252 conserved hypothetical protein TIGR00268. The N-te 88.7
TIGR00591 454 phr2 photolyase PhrII. All proteins in this family 88.47
PF00731150 AIRC: AIR carboxylase; InterPro: IPR000031 Phospho 87.87
PRK05253301 sulfate adenylyltransferase subunit 2; Provisional 87.62
COG0041162 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) m 85.54
PRK00286 438 xseA exodeoxyribonuclease VII large subunit; Revie 85.48
TIGR01162156 purE phosphoribosylaminoimidazole carboxylase, Pur 84.33
PRK13820 394 argininosuccinate synthase; Provisional 83.85
TIGR00237 432 xseA exodeoxyribonuclease VII, large subunit. This 83.76
cd01990202 Alpha_ANH_like_I This is a subfamily of Adenine nu 83.21
COG1570 440 XseA Exonuclease VII, large subunit [DNA replicati 81.45
cd06533171 Glyco_transf_WecG_TagA The glycosyltransferase Wec 81.42
cd01712177 ThiI ThiI is required for thiazole synthesis in th 80.57
>PRK15005 universal stress protein F; Provisional Back     alignment and domain information 
Probab=99.92  E-value=6.6e-24  Score=159.35  Aligned_cols=141  Identities=16%  Similarity=0.193  Sum_probs=99.0

Q ss_pred             CCCeEEEEECCCcc--hHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccch
Q 045490            7 QSRKVMVIADPTRE--SAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGG   84 (200)
Q Consensus         7 ~~~~IlVavD~s~~--s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (200)
                      |+++||||+|+|+.  +.+|++||..+|+..+++|+++||+++....    ..  .   ...    .  ........+..
T Consensus         1 m~~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~----~~--~---~~~----~--~~~~~~~~~~~   65 (144)
T PRK15005          1 MNRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYY----AS--L---GLA----Y--SAELPAMDDLK   65 (144)
T ss_pred             CCccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCccc----cc--c---ccc----c--cccchHHHHHH
Confidence            58999999999998  5799999999999999999999998643200    00  0   000    0  00000001111


Q ss_pred             HHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC-CCCcccccccccCCCccCCCCcChH
Q 045490           85 EDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR-SLSNAILGYRRAGGSLRGSKGVDTA  163 (200)
Q Consensus        85 ~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~-~~~~~~~G~~~~~~~~~~~~~~s~~  163 (200)
                      ++..+.+.+.+++... .+++++.++..|+ |.+.|+++++++++||||||+++ .+.+.++|              |++
T Consensus        66 ~~~~~~l~~~~~~~~~-~~~~~~~~v~~G~-p~~~I~~~a~~~~~DLIV~Gs~~~~~~~~llG--------------S~a  129 (144)
T PRK15005         66 AEAKSQLEEIIKKFKL-PTDRVHVHVEEGS-PKDRILELAKKIPADMIIIASHRPDITTYLLG--------------SNA  129 (144)
T ss_pred             HHHHHHHHHHHHHhCC-CCCceEEEEeCCC-HHHHHHHHHHHcCCCEEEEeCCCCCchheeec--------------chH
Confidence            2222333333333322 2456777888898 99999999999999999999876 56666666              999


Q ss_pred             HHHHcCCCccEEEEe
Q 045490          164 EYLIQNSKCNCVGVQ  178 (200)
Q Consensus       164 ~~vl~~s~~pVLvv~  178 (200)
                      ++|+++++||||+||
T Consensus       130 ~~vl~~a~cpVlvVr  144 (144)
T PRK15005        130 AAVVRHAECSVLVVR  144 (144)
T ss_pred             HHHHHhCCCCEEEeC
Confidence            999999999999996

>PRK15456 universal stress protein UspG; Provisional Back     alignment and domain information
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information
>PRK15118 universal stress global response regulator UspA; Provisional Back     alignment and domain information
>PRK09982 universal stress protein UspD; Provisional Back     alignment and domain information
>PRK10116 universal stress protein UspC; Provisional Back     alignment and domain information
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea Back     alignment and domain information
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms] Back     alignment and domain information
>cd00293 USP_Like Usp: Universal stress protein family Back     alignment and domain information
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF) Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain Back     alignment and domain information
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,] Back     alignment and domain information
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK12342 hypothetical protein; Provisional Back     alignment and domain information
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed Back     alignment and domain information
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems Back     alignment and domain information
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion] Back     alignment and domain information
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases Back     alignment and domain information
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3 Back     alignment and domain information
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional Back     alignment and domain information
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR00268 conserved hypothetical protein TIGR00268 Back     alignment and domain information
>TIGR00591 phr2 photolyase PhrII Back     alignment and domain information
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE Back     alignment and domain information
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional Back     alignment and domain information
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed Back     alignment and domain information
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein Back     alignment and domain information
>PRK13820 argininosuccinate synthase; Provisional Back     alignment and domain information
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit Back     alignment and domain information
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins Back     alignment and domain information
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query200
2gm3_A175 Unknown protein; AT3G01520, putative ethylene-resp 3e-12
1jmv_A141 USPA, universal stress protein A; chaperone; 1.85A 8e-11
3fg9_A156 Protein of universal stress protein USPA family; A 2e-08
3idf_A138 USP-like protein; universal, stress, PSI, MCSG, st 2e-08
1mjh_A162 Protein (ATP-binding domain of protein MJ0577); hy 2e-08
3fdx_A143 Putative filament protein / universal stress PROT; 3e-08
1tq8_A163 Hypothetical protein RV1636; MTCY01B2.28, structur 1e-07
2dum_A170 Hypothetical protein PH0823; conserved hypothetica 2e-07
3loq_A 294 Universal stress protein; structural genomics, PSI 6e-07
3loq_A294 Universal stress protein; structural genomics, PSI 7e-06
3hgm_A147 Universal stress protein TEAD; rossman fold, signa 9e-07
2z08_A137 Universal stress protein family; uncharacterized c 2e-06
3dlo_A155 Universal stress protein; unknown function, struct 3e-06
3olq_A 319 Universal stress protein E; structural genomics, P 3e-06
3olq_A319 Universal stress protein E; structural genomics, P 2e-05
3mt0_A290 Uncharacterized protein PA1789; structural genomic 4e-06
3tnj_A150 Universal stress protein (USP); structural genomic 8e-06
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 1e-04
3cis_A 309 Uncharacterized protein; alpha/beta hydrolase, ATP 3e-04
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Length = 175 Back     alignment and structure
 Score = 61.4 bits (149), Expect = 3e-12
 Identities = 32/188 (17%), Positives = 63/188 (33%), Gaps = 37/188 (19%)

Query: 9   RKVMV---------IADPTRESAGALQYALSHVLLEED---ELVLLHVDTPNSWKNPFIT 56
            KVMV           +P+     A ++ L  ++       +++LLHV   +        
Sbjct: 6   TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVD-------E 58

Query: 57  FLRKPSNSQYTTPASLSSSSEGAAAPGGEDFLEEMKQACEVAKPKLRVHVEKVHTESGNK 116
                 +S Y +P       +   A G    LE     C        V  E    ++G+ 
Sbjct: 59  DGFDDVDSIYASPEDFRDMRQSNKAKG-LHLLEFFVNKCHEIG----VGCE-AWIKTGDP 112

Query: 117 AAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVG 176
             +I  +      D L++G R        G  R      G+     + + +++++C  + 
Sbjct: 113 KDVICQEVKRVRPDFLVVGSR--------GLGRFQKVFVGT----VSAFCVKHAECPVMT 160

Query: 177 VQRKGQNA 184
           ++R     
Sbjct: 161 IKRNADET 168
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4 Length = 141 Back     alignment and structure
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} Length = 156 Back     alignment and structure
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Length = 138 Back     alignment and structure
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4 Length = 162 Back     alignment and structure
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A* Length = 143 Back     alignment and structure
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4 Length = 163 Back     alignment and structure
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii} Length = 170 Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Length = 294 Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Length = 294 Back     alignment and structure
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} Length = 147 Back     alignment and structure
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A Length = 137 Back     alignment and structure
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A* Length = 155 Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Length = 319 Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Length = 319 Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Length = 290 Back     alignment and structure
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A* Length = 150 Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Length = 268 Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Length = 309 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query200
3dlo_A155 Universal stress protein; unknown function, struct 99.92
3s3t_A146 Nucleotide-binding protein, universal stress PROT 99.91
3tnj_A150 Universal stress protein (USP); structural genomic 99.91
3hgm_A147 Universal stress protein TEAD; rossman fold, signa 99.91
1tq8_A163 Hypothetical protein RV1636; MTCY01B2.28, structur 99.9
1mjh_A162 Protein (ATP-binding domain of protein MJ0577); hy 99.9
3fdx_A143 Putative filament protein / universal stress PROT; 99.9
2dum_A170 Hypothetical protein PH0823; conserved hypothetica 99.9
3fg9_A156 Protein of universal stress protein USPA family; A 99.9
2z08_A137 Universal stress protein family; uncharacterized c 99.89
3idf_A138 USP-like protein; universal, stress, PSI, MCSG, st 99.88
2gm3_A175 Unknown protein; AT3G01520, putative ethylene-resp 99.87
1jmv_A141 USPA, universal stress protein A; chaperone; 1.85A 99.84
3loq_A 294 Universal stress protein; structural genomics, PSI 99.82
3olq_A 319 Universal stress protein E; structural genomics, P 99.81
1q77_A138 Hypothetical protein AQ_178; structural genomics, 99.81
3cis_A 309 Uncharacterized protein; alpha/beta hydrolase, ATP 99.81
3mt0_A290 Uncharacterized protein PA1789; structural genomic 99.81
3mt0_A 290 Uncharacterized protein PA1789; structural genomic 99.8
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 99.78
3loq_A294 Universal stress protein; structural genomics, PSI 99.78
3cis_A309 Uncharacterized protein; alpha/beta hydrolase, ATP 99.77
3olq_A319 Universal stress protein E; structural genomics, P 99.77
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 99.7
1wy5_A 317 TILS, hypothetical UPF0072 protein AQ_1887; N-type 93.97
3a2k_A 464 TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, 92.95
2iel_A138 Hypothetical protein TT0030; TT0030,thermus thermo 91.46
4b4k_A181 N5-carboxyaminoimidazole ribonucleotide mutase; is 90.36
3g40_A 294 Na-K-CL cotransporter; alpha/beta fold 10-stranded 90.35
3ih5_A217 Electron transfer flavoprotein alpha-subunit; alph 90.07
4grd_A173 N5-CAIR mutase, phosphoribosylaminoimidazole carbo 88.97
2ywx_A157 Phosphoribosylaminoimidazole carboxylase catalyti; 88.69
3kuu_A174 Phosphoribosylaminoimidazole carboxylase catalyti 87.72
1xmp_A170 PURE, phosphoribosylaminoimidazole carboxylase; pu 87.71
1o97_C264 Electron transferring flavoprotein beta-subunit; F 87.56
3trh_A169 Phosphoribosylaminoimidazole carboxylase carboxylt 87.39
3oow_A166 Phosphoribosylaminoimidazole carboxylase,catalyic; 87.12
2xry_A 482 Deoxyribodipyrimidine photolyase; DNA damage, DNA 86.62
3rg8_A159 Phosphoribosylaminoimidazole carboxylase, PURE PR; 85.31
1u11_A182 PURE (N5-carboxyaminoimidazole ribonucleotide MUT; 85.23
3ors_A163 N5-carboxyaminoimidazole ribonucleotide mutase; is 84.82
1zun_A325 Sulfate adenylyltransferase subunit 2; beta barrel 84.42
1efp_B252 ETF, protein (electron transfer flavoprotein); ele 84.36
1o4v_A183 Phosphoribosylaminoimidazole mutase PURE; structur 83.7
3lp6_A174 Phosphoribosylaminoimidazole carboxylase catalyti; 83.52
1efv_B255 Electron transfer flavoprotein; electron transport 81.55
3umv_A 506 Deoxyribodipyrimidine photo-lyase; CPD cyclobutane 80.57
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A* Back     alignment and structure
Probab=99.92  E-value=1.7e-24  Score=163.90  Aligned_cols=133  Identities=11%  Similarity=0.104  Sum_probs=106.7

Q ss_pred             CCCCCCeEEEEECC-CcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCcccccccc
Q 045490            4 GTPQSRKVMVIADP-TRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAP   82 (200)
Q Consensus         4 ~~~~~~~IlVavD~-s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (200)
                      ..||+++||||+|+ |+.+..++++|+.+++..+++|+++||.+...                         .......+
T Consensus        20 ~~mm~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~-------------------------~~~~~~~~   74 (155)
T 3dlo_A           20 QGMIYMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGG-------------------------RTKDEDII   74 (155)
T ss_dssp             --CCCCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCST-------------------------TSCHHHHH
T ss_pred             cccccCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCC-------------------------cccHHHHH
Confidence            45899999999999 99999999999999999999999999975321                         00112223


Q ss_pred             chHHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC--CCCcccccccccCCCccCCCCc
Q 045490           83 GGEDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR--SLSNAILGYRRAGGSLRGSKGV  160 (200)
Q Consensus        83 ~~~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~--~~~~~~~G~~~~~~~~~~~~~~  160 (200)
                      ..++.++++.+.+.+.+.  .+++++.+..|+ +.+.|++++++.++||||||+++  .+.++++|              
T Consensus        75 ~~~~~l~~~~~~~~~~g~--~~~~~~~v~~G~-~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lG--------------  137 (155)
T 3dlo_A           75 EAKETLSWAVSIIRKEGA--EGEEHLLVRGKE-PPDDIVDFADEVDAIAIVIGIRKRSPTGKLIFG--------------  137 (155)
T ss_dssp             HHHHHHHHHHHHHHHTTC--CEEEEEEESSSC-HHHHHHHHHHHTTCSEEEEECCEECTTSCEECC--------------
T ss_pred             HHHHHHHHHHHHHHhcCC--CceEEEEecCCC-HHHHHHHHHHHcCCCEEEECCCCCCCCCCEEec--------------
Confidence            456788888888777553  355545566787 99999999999999999999986  56667777              


Q ss_pred             ChHHHHHcCCCccEEEEe
Q 045490          161 DTAEYLIQNSKCNCVGVQ  178 (200)
Q Consensus       161 s~~~~vl~~s~~pVLvv~  178 (200)
                      |++++|+++++||||+||
T Consensus       138 Sv~~~vl~~a~~PVLvVr  155 (155)
T 3dlo_A          138 SVARDVILKANKPVICIK  155 (155)
T ss_dssp             HHHHHHHHHCSSCEEEEC
T ss_pred             cHHHHHHHhCCCCEEEeC
Confidence            899999999999999996
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0 Back     alignment and structure
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A* Back     alignment and structure
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0 Back     alignment and structure
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4 Back     alignment and structure
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4 Back     alignment and structure
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A* Back     alignment and structure
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii} Back     alignment and structure
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} Back     alignment and structure
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A Back     alignment and structure
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Back     alignment and structure
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Back     alignment and structure
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4 Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4 Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A* Back     alignment and structure
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus} Back     alignment and structure
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4 Back     alignment and structure
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis} Back     alignment and structure
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans} Back     alignment and structure
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron} Back     alignment and structure
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia} Back     alignment and structure
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii} Back     alignment and structure
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A* Back     alignment and structure
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1 Back     alignment and structure
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C* Back     alignment and structure
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii} Back     alignment and structure
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A* Back     alignment and structure
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A* Back     alignment and structure
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A* Back     alignment and structure
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A Back     alignment and structure
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp} Back     alignment and structure
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2 Back     alignment and structure
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 Back     alignment and structure
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1 Back     alignment and structure
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0 Back     alignment and structure
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S* Back     alignment and structure
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 200
d2gm3a1171 c.26.2.4 (A:5-175) Putative ethylene-responsive pr 3e-10
d1mjha_160 c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archa 3e-08
d2z3va1135 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 { 1e-07
d1jmva_140 c.26.2.4 (A:) Universal stress protein A, UspA {Ha 1e-04
d1tq8a_147 c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobac 4e-04
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 171 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Putative ethylene-responsive protein AT3g01520/F4P13 7
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 54.5 bits (130), Expect = 3e-10
 Identities = 30/187 (16%), Positives = 62/187 (33%), Gaps = 37/187 (19%)

Query: 9   RKVMV---------IADPTRESAGALQYALSHVLLEED---ELVLLHVDTPNSWKNPFIT 56
            KVMV           +P+     A ++ L  ++       +++LLHV   +        
Sbjct: 2   TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFD--- 58

Query: 57  FLRKPSNSQYTTPASLSSSSEGAAAPGGEDFLEEMKQACEVAKPKLRVHVEKVHTESGNK 116
                 +S Y +P       +   A  G   LE     C          +     ++G+ 
Sbjct: 59  ----DVDSIYASPEDFRDMRQSNKAK-GLHLLEFFVNKCHEIGVGCEAWI-----KTGDP 108

Query: 117 AAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVG 176
             +I  +      D L++G R        G  R      G+     + + +++++C  + 
Sbjct: 109 KDVICQEVKRVRPDFLVVGSR--------GLGRFQKVFVGT----VSAFCVKHAECPVMT 156

Query: 177 VQRKGQN 183
           ++R    
Sbjct: 157 IKRNADE 163
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 160 Back     information, alignment and structure
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]} Length = 135 Back     information, alignment and structure
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Length = 140 Back     information, alignment and structure
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 147 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query200
d1mjha_160 "Hypothetical" protein MJ0577 {Archaeon Methanococ 99.95
d2z3va1135 Hypothetical protein TTHA0895 {Thermus thermophilu 99.9
d2gm3a1171 Putative ethylene-responsive protein AT3g01520/F4P 99.9
d1tq8a_147 Hypothetical protein Rv1636 {Mycobacterium tubercu 99.9
d1jmva_140 Universal stress protein A, UspA {Haemophilus infl 99.89
d1q77a_138 Hypothetical protein Aq_178 {Aquifex aeolicus [Tax 99.84
d3clsc1262 Small, beta subunit of electron transfer flavoprot 94.91
d1wy5a1216 TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId 94.88
d1efpb_246 Small, beta subunit of electron transfer flavoprot 93.98
d1np7a2204 Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 93.98
d1xmpa_155 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 91.32
d1ni5a1227 tRNA-Ile-lysidine synthetase, TilS, N-terminal dom 90.6
d1u11a_159 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 90.36
d1qcza_163 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 89.94
d1efvb_252 Small, beta subunit of electron transfer flavoprot 87.28
d1o4va_169 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 87.24
d3clsd1192 Large, alpha subunit of electron transfer flavopro 84.53
d2j07a2170 DNA photolyase {Thermus thermophilus [TaxId: 274]} 82.75
d2c5sa1218 Thiamine biosynthesis protein ThiI, C-terminal dom 81.66
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: "Hypothetical" protein MJ0577
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.95  E-value=4.1e-28  Score=182.30  Aligned_cols=150  Identities=24%  Similarity=0.288  Sum_probs=107.9

Q ss_pred             CCCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCcccc-------
Q 045490            6 PQSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEG-------   78 (200)
Q Consensus         6 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------   78 (200)
                      +||+|||||+|+|+.+.++++||+++|+..+++|+++||.++.........       ...............       
T Consensus         1 ~m~~~ILvavD~s~~s~~al~~a~~la~~~~a~l~llhV~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~   73 (160)
T d1mjha_           1 VMYKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIF-------SLLLGVAGLNKSVEEFENELKN   73 (160)
T ss_dssp             CCCCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC------------------------CHHHHHHHHH
T ss_pred             CCcCeEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEEEecccccccccccc-------cccccccccchhHHHHHHHHHH
Confidence            699999999999999999999999999999999999999876542111100       000000000000000       


Q ss_pred             ccccchHHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC--CCCcccccccccCCCccC
Q 045490           79 AAAPGGEDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR--SLSNAILGYRRAGGSLRG  156 (200)
Q Consensus        79 ~~~~~~~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~--~~~~~~~G~~~~~~~~~~  156 (200)
                      ...++.++.++++.+.+...    ++++++++..|+ |.+.|++++++.++||||||+++  .+.++++|          
T Consensus        74 ~~~~~~~~~l~~~~~~~~~~----gv~~~~~~~~G~-~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~G----------  138 (160)
T d1mjha_          74 KLTEEAKNKMENIKKELEDV----GFKVKDIIVVGI-PHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLG----------  138 (160)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT----TCEEEEEEEEEC-HHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSC----------
T ss_pred             HHHHHHHHHHHHHHHHHHhc----CCeEEEEEEecc-HHHHHhhhhhccccceEEeccCCCCcccccccC----------
Confidence            01112234555555555543    588888999998 99999999999999999999987  56666666          


Q ss_pred             CCCcChHHHHHcCCCccEEEEecCC
Q 045490          157 SKGVDTAEYLIQNSKCNCVGVQRKG  181 (200)
Q Consensus       157 ~~~~s~~~~vl~~s~~pVLvv~~~~  181 (200)
                          |++++|+++++||||+||++.
T Consensus       139 ----S~a~~vl~~s~~pVlvV~~~~  159 (160)
T d1mjha_         139 ----SVTENVIKKSNKPVLVVKRKN  159 (160)
T ss_dssp             ----HHHHHHHHHCCSCEEEECCCC
T ss_pred             ----cHHHHHHhcCCCCEEEEcCCC
Confidence                999999999999999999874
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d3clsc1 c.26.2.3 (C:1-262) Small, beta subunit of electron transfer flavoprotein ETFP {Methylophilus methylotrophus [TaxId: 17]} Back     information, alignment and structure
>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1efpb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
>d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Acetobacter aceti [TaxId: 435]} Back     information, alignment and structure
>d1qcza_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1efvb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d3clsd1 c.26.2.3 (D:1-192) Large, alpha subunit of electron transfer flavoprotein ETFP, N-terminal domain {Methylophilus methylotrophus [TaxId: 17]} Back     information, alignment and structure
>d2j07a2 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure