Citrus Sinensis ID: 045494

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490--
MRGGFEVVHGALDMMQHYEQWDYPSIGFPNPCPNSFTKPPPPPLAVIDNRSVNLERNELSEWVEHITKQLIDDMPDSSTNNADHGLQPDHHHTTIGPCEDNSIIPSVLGDLRPRKMMRISYDGEESFSWSNEQQLGVNQSNINCESHNKLDEQGLRLITLLLECAVAISVDNLGEAHRMLLELTQMASPYGPSCAERVVAYFAKAMASRVLNSWLGICSPLTNHKSVHCAFQVFNNVSPFIKFAHFTSNQAILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAKKFGDIDASMLQLRRGETLAVHWLQHSLYDATGPDWKTLRLLEELSPRVVTLVEQEISHGGDDPNRHRVEHCLLYREINNILAIGGPARSGEDKFKHWRSELARCNGFAQVPMSGNSMAQAQLILNMFPPAHGYSLIPGDGTLMLGWKGTSLFTASSWTSHASR
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccEEEEcccccccccHHHHHHHHcccccccEEEEEEccccHHHHHHHHHHHHHHHHHHccccEEEcccccccccccccccccccccEEEEEEcccccccccccHHHHHHHHHccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccEEccccHHHHHHHHHHHHHcccccccEEEEcccEEEEEEcccEEEEEEEEEccccc
ccccEEEEEccccccccccccccccccccccccccccccccccHHHHccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccHccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHHHHHHccccEEEccHHHcHccccHHHcccccccEEEEHHHHHccccccccHHHHHHHHHHccccEEEEEEEHHccccccHHHHHHHHHHHHHHHHHEHEcccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccEEEEEcccEEEEcccccEEEEEEcccccccc
MRGGFEVVHGALDMMQhyeqwdypsigfpnpcpnsftkppppplavidnrsvnleRNELSEWVEHITKQLiddmpdsstnnadhglqpdhhhttigpcednsiipsvlgdlrprkmmrisydgeesfswsneqqlgvnqsninceshnklDEQGLRLITLLLECAVAISVDNLGEAHRMLLELTqmaspygpsCAERVVAYFAKAMASRVLNSWLgicspltnhksvhcAFQVfnnvspfikfahFTSNQAILEAFHRrdrvhiidldimqglqwpALFHILATrnegpphlrmtgmgtSMEVLLETGKQLFNFAKRlglsfefhpiakkfgdidaSMLQLRRGETLAVHWLQHSlydatgpdwktlRLLEELSPRVVTLVEQEishggddpnrhrvEHCLLYREINNIlaiggparsgedKFKHWRSELArcngfaqvpmsgnsMAQAQLILNmfppahgyslipgdgtlmlgwkgtslftasswtshasr
MRGGFEVVHGALDMMQHYEQWDYPSIGFPNPCPNSFTKPPPPPLAVIDNRSVNLERNELSEWVEHITKQLIDDMPDSSTNNADHGLQPDHHHttigpcednsiiPSVLGDLRPRKMMRISYDGEESFSWSNEQQLGVNQSNINCESHNKLDEQGLRLITLLLECAVAISVDNLGEAHRMLLELTQMASPYGPSCAERVVAYFAKAMASRVLNSWLGICSPLTNHKSVHCAFQVFNNVSPFIKFAHFTSNQAILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAKKFGDIDASMLQLRRGETLAVHWLQHSLYDATGPDWKTLRLLEELSPRVVTLVEqeishggddpnrhRVEHCLLYREINNILAIGGPARSGEDKFKHWRSELARCNGFAQVPMSGNSMAQAQLILNMFPPAHGYSLIPGDGTLMLGWKGTSLftasswtshasr
MRGGFEVVHGALDMMQHYEQWDYPSIGFPNPCPNSFTKPPPPPLAVIDNRSVNLERNELSEWVEHITKQLIDDMPDSSTNNADHGLQPDHHHTTIGPCEDNSIIPSVLGDLRPRKMMRISYDGEESFSWSNEQQLGVNQSNINCESHNKLDEQGLRLITLLLECAVAISVDNLGEAHRMLLELTQMASPYGPSCAERVVAYFAKAMASRVLNSWLGICSPLTNHKSVHCAFQVFNNVSPFIKFAHFTSNQAILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAKKFGDIDASMLQLRRGETLAVHWLQHSLYDATGPDWKTLRLLEELSPRVVTLVEQEISHGGDDPNRHRVEHCLLYREINNILAIGGPARSGEDKFKHWRSELARCNGFAQVPMSGNSMAQAQLILNMFPPAHGYSLIPGDGTLMLGWKGTSLFTASSWTSHASR
************************************************************EWVEHITK*********************************SIIPSVLGD*******************************INCE*HNKLDEQGLRLITLLLECAVAISVDNLGEAHRMLLELTQMASPYGPSCAERVVAYFAKAMASRVLNSWLGICSPLTNHKSVHCAFQVFNNVSPFIKFAHFTSNQAILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAKKFGDIDASMLQLRRGETLAVHWLQHSLYDATGPDWKTLRLLEELSPRVVTLVEQEISHG****NRHRVEHCLLYREINNILAIGGPARSGEDKFKHWRSELARCNGFAQVPMSGNSMAQAQLILNMFPPAHGYSLIPGDGTLMLGWKGTSLFTAS********
*****E***GALDMMQHY************************************E*N****************************************************************************************************ITLLLECAVAISVDNLGEAHRMLLELTQMAS****SCAERVVAYFAKAMASRVLNSWLGICS**TNHKSVHCAFQVFNNVSPFIKFAHFTSNQAILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAKKFGDIDASMLQLRRGETLAVHWLQHSLYDATGPDWKTLRLLEELSPRVVTLVEQEISHGGDDPNRHRVEHCLLYREINNILAIGGPARSGEDKFKHWRSELARCNGFAQVPMSGNSMAQAQLILNMFPPAHGYSLIPGDGTLMLGWKGTSLFTASSWTSHA**
MRGGFEVVHGALDMMQHYEQWDYPSIGFPNPCPNSFTKPPPPPLAVIDNRSVNLERNELSEWVEHITKQLIDDMPDSSTNNADHGLQPDHHHTTIGPCEDNSIIPSVLGDLRPRKMMRISYDGEESFSWSNEQQLGVNQSNINCESHNKLDEQGLRLITLLLECAVAISVDNLGEAHRMLLELTQMASPYGPSCAERVVAYFAKAMASRVLNSWLGICSPLTNHKSVHCAFQVFNNVSPFIKFAHFTSNQAILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAKKFGDIDASMLQLRRGETLAVHWLQHSLYDATGPDWKTLRLLEELSPRVVTLVEQEISHGGDDPNRHRVEHCLLYREINNILAIGGPARSGEDKFKHWRSELARCNGFAQVPMSGNSMAQAQLILNMFPPAHGYSLIPGDGTLMLGWKGTSLFTA*********
*RGGFEVVHGALDMMQHYEQWDYPSIGFPNPCPNSFTKPPPPPLAVIDNRSVNLERNELSEWVEHITKQLI*********************************************************************************QGLRLITLLLECAVAISVDNLGEAHRMLLELTQMASPYGPSCAERVVAYFAKAMASRVLNSWLGICSPLTNHKSVHCAFQVFNNVSPFIKFAHFTSNQAILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAKKFGDIDASMLQLRRGETLAVHWLQHSLYDATGPDWKTLRLLEELSPRVVTLVEQEISHGGDDPNRHRVEHCLLYREINNILAIGGPARSGEDKFKHWRSELARCNGFAQVPMSGNSMAQAQLILNMFPPAHGYSLIPGDGTLMLGWKGTSLFTASSWTS****
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MRGGFEVVHGALDMMQHYEQWDYPSIGFPNPCPNSFTKPPPPPLAVIDNRSVNLERNELSEWVEHITKQLIDDMPDSSTNNADHGLQPDHHHTTIGPCEDNSIIPSVLGDLRPRKMMRISYDGEESFSWSNEQQLGVNQSNINCESHNKLDEQGLRLITLLLECAVAISVDNLGEAHRMLLELTQMASPYGPSCAERVVAYFAKAMASRVLNSWLGICSPLTNHKSVHCAFQVFNNVSPFIKFAHFTSNQAILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAKKFGDIDASMLQLRRGETLAVHWLQHSLYDATGPDWKTLRLLEELSPRVVTLVEQEISHGGDDPNRHRVEHCLLYREINNILAIGGPARSGEDKFKHWRSELARCNGFAQVPMSGNSMAQAQLILNMFPPAHGYSLIPGDGTLMLGWKGTSLFTASSWTSHASR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query492 2.2.26 [Sep-21-2011]
Q9M384653 Protein SCARECROW OS=Arab yes no 0.686 0.517 0.534 1e-106
Q2Z2E9783 Protein SCARECROW OS=Ipom N/A no 0.684 0.430 0.528 1e-103
Q9AVK4819 Protein SCARECROW OS=Pisu N/A no 0.652 0.391 0.522 1e-103
Q2RB59651 Protein SCARECROW 1 OS=Or yes no 0.689 0.520 0.523 1e-102
A2ZAX5659 Protein SCARECROW 1 OS=Or N/A no 0.689 0.514 0.523 2e-97
Q2QYF3660 Protein SCARECROW 2 OS=Or yes no 0.689 0.513 0.521 6e-97
A2ZHL0660 Protein SCARECROW 2 OS=Or N/A no 0.689 0.513 0.521 6e-97
Q9FUZ7668 Protein SCARECROW OS=Zea N/A no 0.689 0.507 0.513 3e-96
Q9FHZ1405 Scarecrow-like protein 23 no no 0.668 0.812 0.450 9e-82
Q8S4W7590 DELLA protein GAI1 OS=Vit no no 0.666 0.555 0.324 3e-47
>sp|Q9M384|SCR_ARATH Protein SCARECROW OS=Arabidopsis thaliana GN=SCR PE=1 SV=1 Back     alignment and function desciption
 Score =  387 bits (994), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/374 (53%), Positives = 265/374 (70%), Gaps = 36/374 (9%)

Query: 147 HNKLDEQGLRLITLLLECAVAISVDNLGEAHRMLLELTQMASPYGPSCAERVVAYFAKAM 206
             K DE+GL L+TLLL+CA A+S DNL EA+++LLE++Q+++PYG S A+RV AYF++AM
Sbjct: 280 RQKQDEEGLHLLTLLLQCAEAVSADNLEEANKLLLEISQLSTPYGTS-AQRVAAYFSEAM 338

Query: 207 ASRVLNSWLGICS-------PLTNHKSVHCAFQVFNNVSPFIKFAHFTSNQAILEAFHRR 259
           ++R+LNS LGI +       P T+   +  AFQVFN +SP +KF+HFT+NQAI EAF + 
Sbjct: 339 SARLLNSCLGIYAALPSRWMPQTHSLKMVSAFQVFNGISPLVKFSHFTANQAIQEAFEKE 398

Query: 260 DRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLG 319
           D VHIIDLDIMQGLQWP LFHILA+R  GPPH+R+TG+GTSME L  TGK+L +FA +LG
Sbjct: 399 DSVHIIDLDIMQGLQWPGLFHILASRPGGPPHVRLTGLGTSMEALQATGKRLSDFADKLG 458

Query: 320 LSFEFHPIAKKFGDIDASMLQLRRGETLAVHWLQHSLYDATGPDWKTLRLLEELSPRVVT 379
           L FEF P+A+K G++D   L +R+ E +AVHWLQHSLYD TG D  TL LL+ L+P+VVT
Sbjct: 459 LPFEFCPLAEKVGNLDTERLNVRKREAVAVHWLQHSLYDVTGSDAHTLWLLQRLAPKVVT 518

Query: 380 LVEQEISHGG--------------------------DDPNRHRVEHCLLYREINNILAIG 413
           +VEQ++SH G                          +   RH VE  LL +EI N+LA+G
Sbjct: 519 VVEQDLSHAGSFLGRFVEAIHYYSALFDSLGASYGEESEERHVVEQQLLSKEIRNVLAVG 578

Query: 414 GPARSGEDKFKHWRSELARCNGFAQVPMSGNSMAQAQLILNMFPPAHGYSLIPGDGTLML 473
           GP+RSGE KF+ WR ++ +C GF  + ++GN+  QA L+L MF P+ GY+L+  +GTL L
Sbjct: 579 GPSRSGEVKFESWREKMQQC-GFKGISLAGNAATQATLLLGMF-PSDGYTLVDDNGTLKL 636

Query: 474 GWKGTSLFTASSWT 487
           GWK  SL TAS+WT
Sbjct: 637 GWKDLSLLTASAWT 650
Transcription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Also required for normal shoot gravitropism. Regulates the radial organization of the shoot axial organs. Binds to the promoter of MGP, NUC, RLK and SCL3. Restricts SHR movment and sequesters it into the nucleus of the endodermis.
Arabidopsis thaliana (taxid: 3702)
>sp|Q2Z2E9|SCR_IPONI Protein SCARECROW OS=Ipomoea nil GN=SCR PE=1 SV=1 Back     alignment and function description
>sp|Q9AVK4|SCR_PEA Protein SCARECROW OS=Pisum sativum GN=SCR PE=2 SV=1 Back     alignment and function description
>sp|Q2RB59|SCR1_ORYSJ Protein SCARECROW 1 OS=Oryza sativa subsp. japonica GN=SCR1 PE=1 SV=1 Back     alignment and function description
>sp|A2ZAX5|SCR1_ORYSI Protein SCARECROW 1 OS=Oryza sativa subsp. indica GN=SCR1 PE=3 SV=2 Back     alignment and function description
>sp|Q2QYF3|SCR2_ORYSJ Protein SCARECROW 2 OS=Oryza sativa subsp. japonica GN=SCR2 PE=2 SV=1 Back     alignment and function description
>sp|A2ZHL0|SCR2_ORYSI Protein SCARECROW 2 OS=Oryza sativa subsp. indica GN=SCR2 PE=3 SV=2 Back     alignment and function description
>sp|Q9FUZ7|SCR_MAIZE Protein SCARECROW OS=Zea mays GN=SCR PE=2 SV=1 Back     alignment and function description
>sp|Q9FHZ1|SCL23_ARATH Scarecrow-like protein 23 OS=Arabidopsis thaliana GN=SCL23 PE=1 SV=1 Back     alignment and function description
>sp|Q8S4W7|GAI1_VITVI DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query492
224082844519 GRAS family transcription factor [Populu 0.973 0.922 0.717 0.0
224066227512 GRAS family transcription factor [Populu 0.967 0.929 0.719 0.0
255577944519 DELLA protein GAIP, putative [Ricinus co 0.973 0.922 0.695 0.0
147805659487 hypothetical protein VITISV_027284 [Viti 0.926 0.936 0.661 0.0
359480026487 PREDICTED: protein SCARECROW-like [Vitis 0.926 0.936 0.657 0.0
356545886510 PREDICTED: protein SCARECROW-like [Glyci 0.926 0.894 0.588 1e-157
356536846521 PREDICTED: protein SCARECROW-like [Glyci 0.941 0.888 0.566 1e-151
449465300457 PREDICTED: protein SCARECROW-like [Cucum 0.837 0.901 0.488 1e-121
255557909 843 transcription factor, putative [Ricinus 0.689 0.402 0.536 1e-106
15232451 653 protein scarecrow [Arabidopsis thaliana] 0.686 0.517 0.534 1e-105
>gi|224082844|ref|XP_002306863.1| GRAS family transcription factor [Populus trichocarpa] gi|222856312|gb|EEE93859.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  746 bits (1926), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/527 (71%), Positives = 426/527 (80%), Gaps = 48/527 (9%)

Query: 1   MRGGFEVVHGALDMMQHYEQWDYPSIGFPNPCPNSFTKPPPPPLAVIDNRSVNLERNELS 60
           M+G +EVVHGAL+M+Q +E WDY S+GFP P  N F KP     AVI+NR +NLERNELS
Sbjct: 1   MKGAYEVVHGALNMIQPHETWDYASVGFPAPISNPFPKP-----AVIENRCLNLERNELS 55

Query: 61  EWVEHITKQLIDDMPDSSTNNADHGLQPDHHHTTIGPCEDNSIIPSVLGDLRPRKMMRIS 120
           EWVEH+TKQLIDD+PD +T++ D  LQ D    T      N I+ S+LG+ RP+K MR S
Sbjct: 56  EWVEHVTKQLIDDLPDIATDH-DESLQTD----TTTVYGGNDIVSSLLGEFRPKKYMRRS 110

Query: 121 Y-DGE-ESFSWSNEQQLGVNQSNIN-------CESHNKLDEQGLRLITLLLECAVAISVD 171
           Y DG  E   WS+E  LGV+Q+NI+         S +++DE GL LITLLLECAVAISVD
Sbjct: 111 YFDGNGEELQWSHE--LGVHQTNISEKEGSTRSPSMSRIDENGLSLITLLLECAVAISVD 168

Query: 172 NLGEAHRMLLELTQMASPYGPSCAERVVAYFAKAMASRVLNSWLGICSPLTNHKSVHCAF 231
           NLGEAHRMLLELTQMASPYGPSCAERVVAYF+KAM SRV+NSWLGICSPL NHKS+H AF
Sbjct: 169 NLGEAHRMLLELTQMASPYGPSCAERVVAYFSKAMGSRVINSWLGICSPLINHKSIHGAF 228

Query: 232 QVFNNVSPFIKFAHFTSNQAILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPH 291
           QVFNN SPFIKFAHFTSNQ+ILEAFHRRDRVH+IDLDIMQGLQWPALFHILATR +GPP 
Sbjct: 229 QVFNNASPFIKFAHFTSNQSILEAFHRRDRVHVIDLDIMQGLQWPALFHILATRIDGPPQ 288

Query: 292 LRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAKKFGDIDASMLQLRRGETLAVHW 351
           +RMTGMGTSME+LLETG+QL NFAKRLG+SFEFHPIAKKFG+IDASM+ LRRGET+AVHW
Sbjct: 289 VRMTGMGTSMELLLETGRQLSNFAKRLGMSFEFHPIAKKFGEIDASMVPLRRGETVAVHW 348

Query: 352 LQHSLYDATGPDWKTLRLLEELSPRVVTLVEQEISHGG---------------------- 389
           LQH+LYDATGPDWKTLRLLE + PRV+TLVEQ+ISHGG                      
Sbjct: 349 LQHTLYDATGPDWKTLRLLEAVGPRVITLVEQDISHGGSFLDRFVGSLHYYSTLFDSLGA 408

Query: 390 ----DDPNRHRVEHCLLYREINNILAIGGPARSGEDKFKHWRSELARCNGFAQVPMSGNS 445
               DDP RHR+EHCLLYREINNILAIGGPARSGEDKF+ WRSELAR + F QVPMSGNS
Sbjct: 409 YLPCDDPGRHRIEHCLLYREINNILAIGGPARSGEDKFRQWRSELARSS-FMQVPMSGNS 467

Query: 446 MAQAQLILNMFPPAHGYSLIPGDGTLMLGWKGTSLFTASSWTSHASR 492
           MAQAQLILNMFPPAHGY+L  G+GTL LGWK TSLFTAS+WT+ ASR
Sbjct: 468 MAQAQLILNMFPPAHGYNLEQGEGTLRLGWKDTSLFTASAWTTRASR 514

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224066227|ref|XP_002302035.1| GRAS family transcription factor [Populus trichocarpa] gi|222843761|gb|EEE81308.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255577944|ref|XP_002529844.1| DELLA protein GAIP, putative [Ricinus communis] gi|223530672|gb|EEF32545.1| DELLA protein GAIP, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147805659|emb|CAN60709.1| hypothetical protein VITISV_027284 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359480026|ref|XP_002272465.2| PREDICTED: protein SCARECROW-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356545886|ref|XP_003541364.1| PREDICTED: protein SCARECROW-like [Glycine max] Back     alignment and taxonomy information
>gi|356536846|ref|XP_003536944.1| PREDICTED: protein SCARECROW-like [Glycine max] Back     alignment and taxonomy information
>gi|449465300|ref|XP_004150366.1| PREDICTED: protein SCARECROW-like [Cucumis sativus] gi|449513014|ref|XP_004164204.1| PREDICTED: protein SCARECROW-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255557909|ref|XP_002519983.1| transcription factor, putative [Ricinus communis] gi|223540747|gb|EEF42307.1| transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|15232451|ref|NP_190990.1| protein scarecrow [Arabidopsis thaliana] gi|75183648|sp|Q9M384.1|SCR_ARATH RecName: Full=Protein SCARECROW; Short=AtSCR; AltName: Full=GRAS family protein 20; Short=AtGRAS-20; AltName: Full=Protein SHOOT GRAVITROPISM 1 gi|6822068|emb|CAB70996.1| SCARECROW1 [Arabidopsis thaliana] gi|15810553|gb|AAL07164.1| putative SCARECROW1 protein [Arabidopsis thaliana] gi|19423878|gb|AAL87315.1| putative SCARECROW1 protein [Arabidopsis thaliana] gi|21281201|gb|AAM45039.1| putative SCARECROW1 protein [Arabidopsis thaliana] gi|332645679|gb|AEE79200.1| protein scarecrow [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query492
TAIR|locus:2080345653 SCR "SCARECROW" [Arabidopsis t 0.487 0.367 0.600 1.3e-107
TAIR|locus:2165685405 AT5G41920 "AT5G41920" [Arabido 0.536 0.651 0.480 2e-79
TAIR|locus:2201557511 RGL1 "RGA-like 1" [Arabidopsis 0.508 0.489 0.361 5.8e-51
TAIR|locus:2005516587 RGA1 "REPRESSOR OF GA1-3 1" [A 0.469 0.393 0.386 2.5e-49
TAIR|locus:2015243658 AT1G63100 "AT1G63100" [Arabido 0.530 0.396 0.374 4.7e-49
TAIR|locus:2006747533 GAI "GIBBERELLIC ACID INSENSIT 0.534 0.493 0.375 2.3e-48
TAIR|locus:2099624547 RGL2 "RGA-like 2" [Arabidopsis 0.654 0.588 0.327 9.8e-48
TAIR|locus:2008086482 SCL3 "AT1G50420" [Arabidopsis 0.520 0.531 0.351 2.5e-43
TAIR|locus:2174974584 AT5G66770 "AT5G66770" [Arabido 0.656 0.553 0.326 3.1e-42
TAIR|locus:2020487445 LAS "AT1G55580" [Arabidopsis t 0.323 0.357 0.406 7.6e-39
TAIR|locus:2080345 SCR "SCARECROW" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 772 (276.8 bits), Expect = 1.3e-107, Sum P(3) = 1.3e-107
 Identities = 149/248 (60%), Positives = 195/248 (78%)

Query:   149 KLDEQGLRLITLLLECAVAISVDNLGEAHRMLLELTQMASPYGPSCAERVVAYFAKAMAS 208
             K DE+GL L+TLLL+CA A+S DNL EA+++LLE++Q+++PYG S A+RV AYF++AM++
Sbjct:   282 KQDEEGLHLLTLLLQCAEAVSADNLEEANKLLLEISQLSTPYGTS-AQRVAAYFSEAMSA 340

Query:   209 RVLNSWLGICS-------PLTNHKSVHCAFQVFNNVSPFIKFAHFTSNQAILEAFHRRDR 261
             R+LNS LGI +       P T+   +  AFQVFN +SP +KF+HFT+NQAI EAF + D 
Sbjct:   341 RLLNSCLGIYAALPSRWMPQTHSLKMVSAFQVFNGISPLVKFSHFTANQAIQEAFEKEDS 400

Query:   262 VHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLS 321
             VHIIDLDIMQGLQWP LFHILA+R  GPPH+R+TG+GTSME L  TGK+L +FA +LGL 
Sbjct:   401 VHIIDLDIMQGLQWPGLFHILASRPGGPPHVRLTGLGTSMEALQATGKRLSDFADKLGLP 460

Query:   322 FEFHPIAKKFGDIDASMLQLRRGETLAVHWLQHSLYDATGPDWKTLRLLEELSPRVVTLV 381
             FEF P+A+K G++D   L +R+ E +AVHWLQHSLYD TG D  TL LL+ L+P+VVT+V
Sbjct:   461 FEFCPLAEKVGNLDTERLNVRKREAVAVHWLQHSLYDVTGSDAHTLWLLQRLAPKVVTVV 520

Query:   382 EQEISHGG 389
             EQ++SH G
Sbjct:   521 EQDLSHAG 528
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0009630 "gravitropism" evidence=IMP
GO:0009956 "radial pattern formation" evidence=IMP
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
GO:0042803 "protein homodimerization activity" evidence=IPI
GO:0043565 "sequence-specific DNA binding" evidence=IDA
GO:0051457 "maintenance of protein location in nucleus" evidence=IMP
GO:0008356 "asymmetric cell division" evidence=IMP
TAIR|locus:2165685 AT5G41920 "AT5G41920" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201557 RGL1 "RGA-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005516 RGA1 "REPRESSOR OF GA1-3 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015243 AT1G63100 "AT1G63100" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006747 GAI "GIBBERELLIC ACID INSENSITIVE" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099624 RGL2 "RGA-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008086 SCL3 "AT1G50420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174974 AT5G66770 "AT5G66770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020487 LAS "AT1G55580" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00028562001
SubName- Full=Chromosome chr7 scaffold_44, whole genome shotgun sequence; (487 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query492
pfam03514372 pfam03514, GRAS, GRAS family transcription factor 1e-117
>gnl|CDD|217595 pfam03514, GRAS, GRAS family transcription factor Back     alignment and domain information 
 Score =  349 bits (898), Expect = e-117
 Identities = 157/375 (41%), Positives = 214/375 (57%), Gaps = 47/375 (12%)

Query: 157 LITLLLECAVAISVDNLGEAHRMLLELTQMASPYGPSCAERVVAYFAKAMASRVLNSWLG 216
           L+ LLL CA A+S  +L  A  +L  L Q+ASP G    +R+ AYF +A+A+R+  S   
Sbjct: 1   LVHLLLACAEAVSSGDLSLAQAILARLNQLASPAGDP-MQRLAAYFTEALAARLARSGSS 59

Query: 217 ICSPL-------TNHKSVHCAFQVFNNVSPFIKFAHFTSNQAILEAFHRRDRVHIIDLDI 269
           I S L       ++   V  A+++F  VSP++KF HFT+NQAILEAF   +RVHIID DI
Sbjct: 60  IYSALPPSPSTPSDSVEVLAAYKLFYEVSPYLKFGHFTANQAILEAFEGEERVHIIDFDI 119

Query: 270 MQGLQWPALFHILATRNEGPPHLRMTGMG----TSMEVLLETGKQLFNFAKRLGLSFEFH 325
            QGLQWP+L   LA+R  GPPHLR+TG+G    +S E L ETG +L  FA  LG+ FEF+
Sbjct: 120 GQGLQWPSLIQALASRPGGPPHLRITGIGSPQFSSAEELEETGDRLAQFADSLGVPFEFN 179

Query: 326 P-IAKKFGDIDASMLQLRRGETLAVHWLQ--HSLYDATGP--DWKTLRLLEELSPRVVTL 380
           P +AK+  D+D  ML +R GE LAV+ +   H L D +        LRL++ L+P+VVTL
Sbjct: 180 PLVAKRLEDLDLEMLDVRPGEALAVNCVFALHRLLDESVSLESPTFLRLVKSLNPKVVTL 239

Query: 381 VEQEISHGG---------------------------DDPNRHRVEHCLLYREINNILAIG 413
           VEQE +H                             D   R +VE  LL REI N++A  
Sbjct: 240 VEQEANHNSAPFLARFVEALHYYSALFDSLEATLPRDSEERRKVERELLGREIVNVVACE 299

Query: 414 GPARSGE-DKFKHWRSELARCNGFAQVPMSGNSMAQAQLILNMFPPAHGYSLIPGDGTLM 472
           G  R    + F  WR  + R  GF  VP+S  ++ QA+L+L ++    GY +   +G+L+
Sbjct: 300 GAERVERHETFGKWRERMRRA-GFRPVPLSEFAVKQAKLLLRLYY-VDGYRVEEDNGSLV 357

Query: 473 LGWKGTSLFTASSWT 487
           LGWKG  L  AS+W 
Sbjct: 358 LGWKGRPLVAASAWR 372

Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction. Length = 372

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 492
PF03514374 GRAS: GRAS domain family; InterPro: IPR005202 Sequ 100.0
PRK15451247 tRNA cmo(5)U34 methyltransferase; Provisional 96.78
TIGR00740239 methyltransferase, putative. A simple BLAST search 95.12
TIGR02716306 C20_methyl_CrtF C-20 methyltransferase BchU. Membe 95.06
PRK14103255 trans-aconitate 2-methyltransferase; Provisional 93.77
PLN02233261 ubiquinone biosynthesis methyltransferase 93.33
PRK06202232 hypothetical protein; Provisional 92.77
TIGR02752231 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me 92.69
PLN02336475 phosphoethanolamine N-methyltransferase 92.13
PTZ00098263 phosphoethanolamine N-methyltransferase; Provision 92.09
PF13847152 Methyltransf_31: Methyltransferase domain; PDB: 3T 91.04
PLN02396322 hexaprenyldihydroxybenzoate methyltransferase 90.6
PRK01683258 trans-aconitate 2-methyltransferase; Provisional 89.01
TIGR00477195 tehB tellurite resistance protein TehB. Part of a 88.68
TIGR02021219 BchM-ChlM magnesium protoporphyrin O-methyltransfe 88.67
PRK11207197 tellurite resistance protein TehB; Provisional 88.58
PF13489161 Methyltransf_23: Methyltransferase domain; PDB: 3J 88.39
PRK00216239 ubiE ubiquinone/menaquinone biosynthesis methyltra 88.21
TIGR01934223 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis 87.97
PRK08317241 hypothetical protein; Provisional 86.67
PF09243274 Rsm22: Mitochondrial small ribosomal subunit Rsm22 86.32
PF00891241 Methyltransf_2: O-methyltransferase; InterPro: IPR 86.19
PRK12335287 tellurite resistance protein TehB; Provisional 84.92
PRK11873272 arsM arsenite S-adenosylmethyltransferase; Reviewe 84.7
PF12847112 Methyltransf_18: Methyltransferase domain; PDB: 3G 84.44
PLN02585315 magnesium protoporphyrin IX methyltransferase 84.01
PRK11036255 putative S-adenosyl-L-methionine-dependent methylt 83.97
TIGR03587204 Pse_Me-ase pseudaminic acid biosynthesis-associate 83.83
PLN02244340 tocopherol O-methyltransferase 83.65
PRK05134233 bifunctional 3-demethylubiquinone-9 3-methyltransf 83.08
smart00138264 MeTrc Methyltransferase, chemotaxis proteins. Meth 82.33
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] Back     alignment and domain information 
Probab=100.00  E-value=6.6e-97  Score=768.98  Aligned_cols=328  Identities=46%  Similarity=0.807  Sum_probs=308.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhhcccCcCccCCCCC-------CccHHH
Q 045494          157 LITLLLECAVAISVDNLGEAHRMLLELTQMASPYGPSCAERVVAYFAKAMASRVLNSWLGICSPLTN-------HKSVHC  229 (492)
Q Consensus       157 L~~LLl~CAeAV~~gn~~~A~~lL~~L~~laSp~Gdsp~qRlA~yFaeAL~~Rl~~~~~~~~~~l~~-------~~~~~~  229 (492)
                      |++||++||+||++||.+.|+.+|++|++++||+|+ |+||||+||++||.+||.+++++.|.++..       ..+...
T Consensus         1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~-~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (374)
T PF03514_consen    1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGD-PMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLA   79 (374)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCC-HHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHH
Confidence            689999999999999999999999999999999996 899999999999999999988877765543       234678


Q ss_pred             HHHHHHhcCCccchhhhhhhHHHHhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCC----CHHHHH
Q 045494          230 AFQVFNNVSPFIKFAHFTSNQAILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGT----SMEVLL  305 (492)
Q Consensus       230 A~~~f~e~sP~~kfa~ftANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~----~~~~L~  305 (492)
                      ||+.||+.|||+||+|||||||||||++|+++||||||||++|+|||+|||+||.|++|||+||||||++    +.+.++
T Consensus        80 a~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~  159 (374)
T PF03514_consen   80 AYQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQ  159 (374)
T ss_pred             HHHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999    678999


Q ss_pred             HHHHHHHHHHHHhCCceEEeee-cccccccccccccccCCCeEEEeec--cccccCCC----CccHHHHHHHHhcCCcEE
Q 045494          306 ETGKQLFNFAKRLGLSFEFHPI-AKKFGDIDASMLQLRRGETLAVHWL--QHSLYDAT----GPDWKTLRLLEELSPRVV  378 (492)
Q Consensus       306 etg~rL~~fA~slgvpFeF~~V-~~~~eel~~~~l~l~~gEaLaVn~~--lh~L~~~~----~~~~~~L~~Ir~L~Pkvv  378 (492)
                      +||++|.+||+++||||||++| ..+++++++++|.+++||+|||||.  +|++.+.+    +|++.||+.||+|+|+||
T Consensus       160 ~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vv  239 (374)
T PF03514_consen  160 ETGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVV  239 (374)
T ss_pred             HHHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEE
Confidence            9999999999999999999995 5678889999999999999999984  67776543    467889999999999999


Q ss_pred             EEEeecCCCCC---------------------------CChHHHHHHHHHHHHHHHHHHhhcCCCc-ccccchhhHHHHH
Q 045494          379 TLVEQEISHGG---------------------------DDPNRHRVEHCLLYREINNILAIGGPAR-SGEDKFKHWRSEL  430 (492)
Q Consensus       379 vlvEqea~hns---------------------------d~~eR~~iE~~~lgreI~NiVAcEG~~R-~rhE~~~~Wr~rm  430 (492)
                      |++|+|+|||+                           ++++|..+|+.+||+||+|||||||.+| ||||++++|++||
T Consensus       240 v~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~~r~  319 (374)
T PF03514_consen  240 VLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQWRRRM  319 (374)
T ss_pred             EEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHHHHHH
Confidence            99999999998                           4679999999999999999999999999 9999999999999


Q ss_pred             hccCCCeeccCChhHHHHHHHHHhhCCCCCCcEEEeCCcEEEEEECCceeEEEecee
Q 045494          431 ARCNGFAQVPMSGNSMAQAQLILNMFPPAHGYSLIPGDGTLMLGWKGTSLFTASSWT  487 (492)
Q Consensus       431 ~~~AGF~~v~lS~~~~~qAk~ll~~~~~~~gy~v~~~~g~L~LgWk~~pL~s~SAWr  487 (492)
                      .+ |||+++|+|++++.|||++|++|+ ++||+|++++|||+||||++||+++||||
T Consensus       320 ~~-aGF~~~~ls~~~~~qa~~ll~~~~-~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr  374 (374)
T PF03514_consen  320 RR-AGFRPVPLSEFAVSQAKLLLRKFP-GDGYTVEEDGGCLLLGWKGRPLVAASAWR  374 (374)
T ss_pred             Hh-cCCeecCCCHHHHHHHHHHHhccC-CCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence            99 999999999999999999999995 78999999999999999999999999997

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional Back     alignment and domain information
>TIGR00740 methyltransferase, putative Back     alignment and domain information
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU Back     alignment and domain information
>PRK14103 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>PLN02233 ubiquinone biosynthesis methyltransferase Back     alignment and domain information
>PRK06202 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional Back     alignment and domain information
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A Back     alignment and domain information
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase Back     alignment and domain information
>PRK01683 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>TIGR00477 tehB tellurite resistance protein TehB Back     alignment and domain information
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase Back     alignment and domain information
>PRK11207 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C Back     alignment and domain information
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed Back     alignment and domain information
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases Back     alignment and domain information
>PRK08317 hypothetical protein; Provisional Back     alignment and domain information
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals Back     alignment and domain information
>PRK12335 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed Back     alignment and domain information
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A Back     alignment and domain information
>PLN02585 magnesium protoporphyrin IX methyltransferase Back     alignment and domain information
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional Back     alignment and domain information
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase Back     alignment and domain information
>PLN02244 tocopherol O-methyltransferase Back     alignment and domain information
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional Back     alignment and domain information
>smart00138 MeTrc Methyltransferase, chemotaxis proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query492
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 45.2 bits (106), Expect = 4e-05
 Identities = 38/289 (13%), Positives = 92/289 (31%), Gaps = 77/289 (26%)

Query: 33  PNSFTKPPPPPLAVIDNRSVNLERNELSEW--VEHITKQLIDDMPDSSTNNADHGLQPD- 89
           P       P  L++I        R+ L+ W   +H+    +  + +SS N     L+P  
Sbjct: 319 PREVLTTNPRRLSII----AESIRDGLATWDNWKHVNCDKLTTIIESSLNV----LEPAE 370

Query: 90  --HHHTTIGPCEDNSIIPS-VLGDLRPRKMMRISYDGEESFSWSNEQQLGVNQSNINCES 146
                  +     ++ IP+ +L  +                 W +  +   +   +  + 
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLI-----------------WFDVIK--SDVMVVVNKL 411

Query: 147 HNK--LDEQG----LRLITLLLECAVAISVDNLGEAHRMLLELTQMASPY-----GPSCA 195
           H    +++Q     + + ++ LE  + + ++N    HR +++   +   +      P   
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLE--LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469

Query: 196 ERVVAYF---------AKAMASRV-------LN-SWLG-----ICSPLTNHKSVHCAFQV 233
           ++   YF               R+       L+  +L        +      S+    Q 
Sbjct: 470 DQ---YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526

Query: 234 FNNVSPFIKFAHFTSNQAI--LEAFHRRDRVHII---DLDIMQ-GLQWP 276
                P+I        + +  +  F  +   ++I     D+++  L   
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAE 575

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query492
4gek_A261 TRNA (CMO5U34)-methyltransferase; structural genom 96.77
3dlc_A219 Putative S-adenosyl-L-methionine-dependent methylt 96.35
4a6d_A353 Hydroxyindole O-methyltransferase; melatonin, circ 96.21
3bkx_A275 SAM-dependent methyltransferase; YP_807781.1, cycl 96.19
2r3s_A335 Uncharacterized protein; methyltransferase domain, 95.86
3dh0_A219 SAM dependent methyltransferase; cystal structure, 95.74
3dp7_A363 SAM-dependent methyltransferase; structural genomi 95.61
1vl5_A260 Unknown conserved protein BH2331; putative methylt 95.59
3dtn_A234 Putative methyltransferase MM_2633; structural gen 95.39
2aot_A292 HMT, histamine N-methyltransferase; classic methyl 95.24
1qzz_A374 RDMB, aclacinomycin-10-hydroxylase; anthracycline, 95.24
1x19_A359 CRTF-related protein; methyltransferase, bacterioc 95.13
3gwz_A369 MMCR; methyltransferase, mitomycin, S-adenosyl met 94.98
3jwh_A217 HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena 94.71
3i53_A332 O-methyltransferase; CO-complex, rossmann-like fol 94.52
3hnr_A220 Probable methyltransferase BT9727_4108; structural 94.51
1kpg_A287 CFA synthase;, cyclopropane-fatty-acyl-phospholipi 94.33
3kkz_A267 Uncharacterized protein Q5LES9; putative methyltra 94.32
3reo_A368 (ISO)eugenol O-methyltransferase; directed evoluti 94.31
1xxl_A239 YCGJ protein; structural genomics, protein structu 94.21
2ip2_A334 Probable phenazine-specific methyltransferase; pyo 94.18
1tw3_A360 COMT, carminomycin 4-O-methyltransferase; anthracy 94.11
3htx_A950 HEN1; HEN1, small RNA methyltransferase, protein-R 94.08
3hem_A302 Cyclopropane-fatty-acyl-phospholipid synthase 2; p 94.01
3mcz_A352 O-methyltransferase; adomet_mtases, S-adenosylmeth 93.87
3f4k_A257 Putative methyltransferase; structural genomics, P 93.86
3mgg_A276 Methyltransferase; NYSGXRC, PSI-II, protein struct 93.7
2fk8_A318 Methoxy mycolic acid synthase 4; S-adenosylmethion 93.16
3p9c_A364 Caffeic acid O-methyltransferase; S-adenosylmethio 93.11
3lst_A348 CALO1 methyltransferase; calicheamicin, enediyne, 93.05
1nkv_A256 Hypothetical protein YJHP; structural genomics, PS 93.0
3vc1_A312 Geranyl diphosphate 2-C-methyltransferase; rossman 92.97
2o57_A297 Putative sarcosine dimethylglycine methyltransfera 92.92
4fsd_A383 Arsenic methyltransferase; rossmann fold; 1.75A {C 92.64
3jwg_A219 HEN1, methyltransferase type 12; 1.90A {Clostridiu 92.25
4htf_A285 S-adenosylmethionine-dependent methyltransferase; 91.84
2p7i_A250 Hypothetical protein; putative methyltransferase, 91.6
3sm3_A235 SAM-dependent methyltransferases; NESG, structural 91.47
3gu3_A284 Methyltransferase; alpha-beta protein, structural 90.95
2p35_A259 Trans-aconitate 2-methyltransferase; SAM dependent 90.69
3bus_A273 REBM, methyltransferase; rebeccamycin synthesis; H 90.65
3ocj_A305 Putative exported protein; structural genomics, PS 90.53
3m70_A286 Tellurite resistance protein TEHB homolog; structu 90.34
2yqz_A263 Hypothetical protein TTHA0223; RNA methyltransfera 89.95
3h2b_A203 SAM-dependent methyltransferase; alpha-beta protei 89.7
1fp2_A352 Isoflavone O-methyltransferase; protein-product co 89.53
3ujc_A266 Phosphoethanolamine N-methyltransferase; parasite; 89.33
3ofk_A216 Nodulation protein S; NODS, N-methyltransferase, S 88.75
3ccf_A279 Cyclopropane-fatty-acyl-phospholipid synthase; YP_ 88.66
3e8s_A227 Putative SAM dependent methyltransferase; NP_74470 88.54
3e23_A211 Uncharacterized protein RPA2492; alpha-beta protei 88.17
3g5l_A253 Putative S-adenosylmethionine dependent methyltran 88.13
2qe6_A274 Uncharacterized protein TFU_2867; putative methylt 87.91
1zg3_A358 Isoflavanone 4'-O-methyltransferase; rossman fold, 87.4
1y8c_A246 S-adenosylmethionine-dependent methyltransferase; 86.4
3r0q_C376 Probable protein arginine N-methyltransferase 4.2; 85.71
3hm2_A178 Precorrin-6Y C5,15-methyltransferase; alpha-beta-s 85.69
3thr_A293 Glycine N-methyltransferase; GNMT, folate, methylt 85.49
3u81_A221 Catechol O-methyltransferase; neurotransmitter deg 85.44
3lcv_B281 Sisomicin-gentamicin resistance methylase SGM; ant 85.37
3p9n_A189 Possible methyltransferase (methylase); RV2966C, a 85.24
3uwp_A438 Histone-lysine N-methyltransferase, H3 lysine-79; 85.18
3l8d_A242 Methyltransferase; structural genomics, PSI, nysgr 85.01
1vlm_A219 SAM-dependent methyltransferase; possible histamin 84.99
1fp1_D372 Isoliquiritigenin 2'-O-methyltransferase; protein- 84.47
1wzn_A252 SAM-dependent methyltransferase; structural genomi 84.15
2xvm_A199 Tellurite resistance protein TEHB; antibiotic resi 84.0
3mq2_A218 16S rRNA methyltransferase; methyltranferase, ribo 83.72
3lcc_A235 Putative methyl chloride transferase; halide methy 83.65
3bgv_A313 MRNA CAP guanine-N7 methyltransferase; alternative 83.55
3g5t_A299 Trans-aconitate 3-methyltransferase; structural ge 83.47
3frh_A253 16S rRNA methylase; methyltransferase domain, heli 82.97
3dli_A240 Methyltransferase; PSI-II, NYSGXRC, structural gen 82.87
1wy7_A207 Hypothetical protein PH1948; seven-stranded beta s 81.37
1g6q_1328 HnRNP arginine N-methyltransferase; SAM-binding do 80.88
2yxd_A183 Probable cobalt-precorrin-6Y C(15)-methyltransfer 80.58
3giw_A277 Protein of unknown function DUF574; rossmann-fold 80.1
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* Back     alignment and structure
Probab=96.77  E-value=0.0044  Score=60.36  Aligned_cols=107  Identities=11%  Similarity=0.153  Sum_probs=66.0

Q ss_pred             eeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeeeccccccccccccc
Q 045494          261 RVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAKKFGDIDASMLQ  340 (492)
Q Consensus       261 ~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V~~~~eel~~~~l~  340 (492)
                      .-+|+|+|.|.|.    +...|+.+. ++|..+||||+.+.+.++.+.+++.++-  ...+++|  +..+..++.     
T Consensus        71 ~~~vLDlGcGtG~----~~~~la~~~-~~~~~~v~gvD~s~~ml~~A~~~~~~~~--~~~~v~~--~~~D~~~~~-----  136 (261)
T 4gek_A           71 GTQVYDLGCSLGA----ATLSVRRNI-HHDNCKIIAIDNSPAMIERCRRHIDAYK--APTPVDV--IEGDIRDIA-----  136 (261)
T ss_dssp             TCEEEEETCTTTH----HHHHHHHTC-CSSSCEEEEEESCHHHHHHHHHHHHTSC--CSSCEEE--EESCTTTCC-----
T ss_pred             CCEEEEEeCCCCH----HHHHHHHhc-CCCCCEEEEEECCHHHHHHHHHHHHhhc--cCceEEE--eeccccccc-----
Confidence            3479999999984    445566543 3466899999999888887777765432  1224444  334444433     


Q ss_pred             ccCCCeEEEeeccccccCCCCccHHHHHHH-HhcCCcEEEE-Eee
Q 045494          341 LRRGETLAVHWLQHSLYDATGPDWKTLRLL-EELSPRVVTL-VEQ  383 (492)
Q Consensus       341 l~~gEaLaVn~~lh~L~~~~~~~~~~L~~I-r~L~Pkvvvl-vEq  383 (492)
                      ..+-..+++++.+|.+.+  ..+..+|+.| |.|+|.-..+ .|.
T Consensus       137 ~~~~d~v~~~~~l~~~~~--~~~~~~l~~i~~~LkpGG~lii~e~  179 (261)
T 4gek_A          137 IENASMVVLNFTLQFLEP--SERQALLDKIYQGLNPGGALVLSEK  179 (261)
T ss_dssp             CCSEEEEEEESCGGGSCH--HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccccceeeeeeeecCc--hhHhHHHHHHHHHcCCCcEEEEEec
Confidence            223345666766665532  1245677765 7799987654 454
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Back     alignment and structure
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* Back     alignment and structure
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Back     alignment and structure
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Back     alignment and structure
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Back     alignment and structure
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Back     alignment and structure
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Back     alignment and structure
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Back     alignment and structure
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Back     alignment and structure
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Back     alignment and structure
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Back     alignment and structure
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Back     alignment and structure
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Back     alignment and structure
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Back     alignment and structure
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Back     alignment and structure
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Back     alignment and structure
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Back     alignment and structure
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* Back     alignment and structure
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Back     alignment and structure
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Back     alignment and structure
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Back     alignment and structure
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Back     alignment and structure
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* Back     alignment and structure
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Back     alignment and structure
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Back     alignment and structure
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Back     alignment and structure
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Back     alignment and structure
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Back     alignment and structure
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Back     alignment and structure
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Back     alignment and structure
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* Back     alignment and structure
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Back     alignment and structure
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Back     alignment and structure
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Back     alignment and structure
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} Back     alignment and structure
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Back     alignment and structure
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Back     alignment and structure
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A Back     alignment and structure
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Back     alignment and structure
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Back     alignment and structure
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Back     alignment and structure
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Back     alignment and structure
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Back     alignment and structure
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Back     alignment and structure
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Back     alignment and structure
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Back     alignment and structure
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Back     alignment and structure
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Back     alignment and structure
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Back     alignment and structure
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Back     alignment and structure
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} Back     alignment and structure
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Back     alignment and structure
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Back     alignment and structure
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} Back     alignment and structure
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Back     alignment and structure
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Back     alignment and structure
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... Back     alignment and structure
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* Back     alignment and structure
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* Back     alignment and structure
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} Back     alignment and structure
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Back     alignment and structure
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Back     alignment and structure
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Back     alignment and structure
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Back     alignment and structure
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Back     alignment and structure
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Back     alignment and structure
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Back     alignment and structure
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Back     alignment and structure
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* Back     alignment and structure
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Back     alignment and structure
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 Back     alignment and structure
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 Back     alignment and structure
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Back     alignment and structure
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query492
d1tw3a2253 Carminomycin 4-O-methyltransferase {Streptomyces p 97.01
d1im8a_225 Hypothetical protein HI0319 (YecO) {Haemophilus in 96.66
d1jqea_280 Histamine methyltransferase {Human (Homo sapiens) 96.6
d1qzza2256 Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu 96.15
d1vl5a_231 Hypothetical protein BH2331 {Bacillus halodurans [ 95.48
d1fp1d2244 Chalcone O-methyltransferase {Alfalfa (Medicago sa 95.45
d1xxla_234 Hypothetical protein YcgJ {Bacillus subtilis [TaxI 95.24
d1fp2a2244 Isoflavone O-methyltransferase {Alfalfa (Medicago 95.22
d1vlma_208 Possible histamine N-methyltransferase TM1293 {The 94.56
d1nkva_245 Hypothetical Protein YjhP {Escherichia coli [TaxId 93.86
d2o57a1282 Putative sarcosine dimethylglycine methyltransfera 93.76
d2fk8a1280 Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri 92.5
d1ri5a_252 mRNA cap (Guanine N-7) methyltransferase {Fungus ( 92.47
d2gh1a1281 Methyltransferase BC2162 {Bacillus cereus [TaxId: 91.94
d1kyza2243 Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra 90.61
d2i6ga1198 Putative methyltransferase TehB {Salmonella typhim 90.37
d1y8ca_246 Putative methyltransferase CAC2371 {Clostridium ac 89.23
d1ve3a1226 Hypothetical protein PH0226 {Archaeon Pyrococcus h 86.63
d1wzna1251 Hypothetical methyltransferase PH1305 {Archaeon Py 83.2
d2ex4a1222 Adrenal gland protein AD-003 (C9orf32) {Human (Hom 82.68
>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=97.01  E-value=0.0021  Score=59.56  Aligned_cols=162  Identities=19%  Similarity=0.258  Sum_probs=87.1

Q ss_pred             hhHHHHhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCc--eEEe
Q 045494          248 SNQAILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLS--FEFH  325 (492)
Q Consensus       248 ANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvp--FeF~  325 (492)
                      ....|++++.=.+.=+|+|+|.+.|.    +...|+.+.   |.+++|+++.+ +.++.+.+++    ...|+.  ++|.
T Consensus        68 ~~~~~~~~~d~~~~~~VLDvGcG~G~----~~~~la~~~---p~~~~~~~D~~-~~~~~a~~~~----~~~~~~~rv~~~  135 (253)
T d1tw3a2          68 AFDAPAAAYDWTNVRHVLDVGGGKGG----FAAAIARRA---PHVSATVLEMA-GTVDTARSYL----KDEGLSDRVDVV  135 (253)
T ss_dssp             TTHHHHHHSCCTTCSEEEEETCTTSH----HHHHHHHHC---TTCEEEEEECT-THHHHHHHHH----HHTTCTTTEEEE
T ss_pred             HHHHHHhhcCCccCCEEEEeCCCCCH----HHHHHHHhc---ceeEEEEccCH-HHHHHHHHHH----HHhhcccchhhc
Confidence            34566666653444489999999995    334455443   66899999865 3454444443    344554  4443


Q ss_pred             eecccccccccccccccCCCeEEEeeccccccCCCCccHHHHHHH-HhcCCcE-EEEEeecCCCCCCChHHHHHHHHHHH
Q 045494          326 PIAKKFGDIDASMLQLRRGETLAVHWLQHSLYDATGPDWKTLRLL-EELSPRV-VTLVEQEISHGGDDPNRHRVEHCLLY  403 (492)
Q Consensus       326 ~V~~~~eel~~~~l~l~~gEaLaVn~~lh~L~~~~~~~~~~L~~I-r~L~Pkv-vvlvEqea~hnsd~~eR~~iE~~~lg  403 (492)
                        ..+..+..+.     .-+++..+..+|.+.+.  ....+|+.+ +.|+|.- ++++|............. ..     
T Consensus       136 --~~D~~~~~~~-----~~D~v~~~~vlh~~~d~--~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~-~~-----  200 (253)
T d1tw3a2         136 --EGDFFEPLPR-----KADAIILSFVLLNWPDH--DAVRILTRCAEALEPGGRILIHERDDLHENSFNEQF-TE-----  200 (253)
T ss_dssp             --ECCTTSCCSS-----CEEEEEEESCGGGSCHH--HHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHH-HH-----
T ss_pred             --cccchhhccc-----chhheeeccccccCCch--hhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHH-HH-----
Confidence              3332221111     11344445555654321  223567665 6799986 445564433221111111 11     


Q ss_pred             HHHHHHHhhcCCCcccccchhhHHHHHhccCCCeeccC
Q 045494          404 REINNILAIGGPARSGEDKFKHWRSELARCNGFAQVPM  441 (492)
Q Consensus       404 reI~NiVAcEG~~R~rhE~~~~Wr~rm~~~AGF~~v~l  441 (492)
                      ..+.-++.+.|.+|    +.++|+..+.+ |||+.+.+
T Consensus       201 ~dl~~~~~~~g~~r----t~~e~~~ll~~-AGf~~~~v  233 (253)
T d1tw3a2         201 LDLRMLVFLGGALR----TREKWDGLAAS-AGLVVEEV  233 (253)
T ss_dssp             HHHHHHHHHSCCCC----BHHHHHHHHHH-TTEEEEEE
T ss_pred             hhHHHHhhCCCcCC----CHHHHHHHHHH-CCCeEEEE
Confidence            12222345567555    44689999999 99986554
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Back     information, alignment and structure
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Back     information, alignment and structure
>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Back     information, alignment and structure
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure