Citrus Sinensis ID: 045498

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------
Protein Sequence
FDLTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHccccHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHcccccccEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHccccccEEEHHHHHHHHHHcccHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHc
Coil and Loop (DISEMBL)
fdlteqrfkgnFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELvtynplihdnwekQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLsekglvpgvvTYNILINGLCKKGMIMEADKLLVQMKekgcfpdstsfnTVIQGFLVKNETDRASSFLKKNM
Flexible Loop (DISEMBL)
fdlteqrfkgnfhvygirinGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKldqlsekglvpgvVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGflvknetdrassflkknm
Low Complexity Region (SEG)
FDLTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM
Disordered region (IsUnstruct)
*******FKGNFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK**************
Disordered Region (DISOPRED)
FDLTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM
Disordered Region (DISEMBL)
FDLTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM
Disordered Region (DISPRO)
FDLTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
FDLTEQRFKGNFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	207	2.2.26 [Sep-21-2011]
Q9SI78	485	Pentatricopeptide repeat-	yes	no	0.975	0.416	0.341	3e-30
Q6NQ83	619	Pentatricopeptide repeat-	no	no	0.859	0.287	0.345	1e-29
Q0WKV3	637	Pentatricopeptide repeat-	no	no	0.927	0.301	0.336	4e-29
Q9ASZ8	621	Pentatricopeptide repeat-	no	no	0.927	0.309	0.326	2e-28
Q3ECK2	548	Pentatricopeptide repeat-	no	no	0.975	0.368	0.322	5e-28
Q9LSL9	915	Pentatricopeptide repeat-	no	no	0.975	0.220	0.342	1e-27
Q3EDF8	598	Pentatricopeptide repeat-	no	no	0.922	0.319	0.297	4e-27
Q9LQ16	632	Pentatricopeptide repeat-	no	no	0.985	0.322	0.300	6e-27
O49436	660	Pentatricopeptide repeat-	no	no	0.859	0.269	0.329	1e-26
Q9FMF6	730	Pentatricopeptide repeat-	no	no	0.908	0.257	0.328	2e-26

>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720 OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1

 Score =  131 bits (329), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 72/211 (34%), Positives = 116/211 (54%), Gaps = 9/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + E  F+ +  +Y   I+G CKI  ++ A+       + G+  D   Y+SL+ GLC   R
Sbjct: 165 MEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGR 224

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
             +A  L   MV + I   ++T+  +I D + K+G+FS AM L + + R   + ++  Y+
Sbjct: 225 WSDAARLMRDMVMRDIVPNVITFTAVI-DVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYN 283

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+GLC  GR +EA++ LD +  KG +P VVTYN LING CK   + E  KL  +M ++
Sbjct: 284 SLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQR 343

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G   D+ ++NT+IQG+      D A     +
Sbjct: 344 GLVGDTITYNTIIQGYFQAGRPDAAQEIFSR 374

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1

 Score =  129 bits (325), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 64/185 (34%), Positives = 106/185 (57%), Gaps = 7/185 (3%)

Query: 14  VYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
            Y I IN  CK + +D  ++       KG+  +   Y++L+ G C   +L  A ELF +M
Sbjct: 387 TYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEM 446

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V++G+   +VTY  L+    +      A+ + + +++ +  L I +Y+++I G+C   + 
Sbjct: 447 VSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKV 506

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           ++A      LS+KG+ P VVTYN++I GLCKKG + EAD L  +MKE GC PD  ++N +
Sbjct: 507 DDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNIL 566

Query: 187 IQGFL 191
           I+  L
Sbjct: 567 IRAHL 571

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2 SV=1

 Score =  127 bits (320), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 69/205 (33%), Positives = 114/205 (55%), Gaps = 13/205 (6%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   + I ING CK   ID  ++       +G+  D   Y++LI G C   +L  A ELF
Sbjct: 402 NIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELF 461

Query: 64  DKMVAQGITAELVTYNPLIH---DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            +MV++ +   +VTY  L+    DN E +    A+ + + +E+ K EL+I +Y+++I G+
Sbjct: 462 QEMVSRKVPPNIVTYKILLDGLCDNGESE---KALEIFEKIEKSKMELDIGIYNIIIHGM 518

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C   + ++A      L  KG+ PGV TYNI+I GLCKKG + EA+ L  +M+E G  PD 
Sbjct: 519 CNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDG 578

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            ++N +I+  L   +  ++   +++
Sbjct: 579 WTYNILIRAHLGDGDATKSVKLIEE 603

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1

 Score =  125 bits (315), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/205 (32%), Positives = 117/205 (57%), Gaps = 13/205 (6%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   + I ING CK   ID  ++       +G+  D   Y++LI G C   +L+ A ELF
Sbjct: 386 NIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELF 445

Query: 64  DKMVAQGITAELVTYNPLIH---DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
            +MV++ +  ++V+Y  L+    DN E +    A+ + + +E+ K EL+I +Y+++I G+
Sbjct: 446 QEMVSRRVRPDIVSYKILLDGLCDNGEPE---KALEIFEKIEKSKMELDIGIYNIIIHGM 502

Query: 121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           C   + ++A      L  KG+ P V TYNI+I GLCKKG + EAD L  +M+E G  P+ 
Sbjct: 503 CNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNG 562

Query: 181 TSFNTVIQGFLVKNETDRASSFLKK 205
            ++N +I+  L + +  +++  +++
Sbjct: 563 CTYNILIRAHLGEGDATKSAKLIEE 587

Arabidopsis thaliana (taxid: 3702)

>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680, mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2 SV=2

 Score =  124 bits (310), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 115/211 (54%), Gaps = 9/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + E  +K +   Y   I+ +CK + ++ A        +KGI  +V  Y++L+NGLC  +R
Sbjct: 181 MVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSR 240

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYS 114
             +A  L   M+ + IT  ++TY+ L+ D + K G+   A  L + + R   + +I  YS
Sbjct: 241 WSDAARLLSDMIKKKITPNVITYSALL-DAFVKNGKVLEAKELFEEMVRMSIDPDIVTYS 299

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +I+GLC   R +EA +  D +  KG +  VV+YN LING CK   + +  KL  +M ++
Sbjct: 300 SLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQR 359

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           G   ++ ++NT+IQGF    + D+A  F  +
Sbjct: 360 GLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQ 390

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1

 Score =  123 bits (308), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 117/210 (55%), Gaps = 8/210 (3%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           + E     +F  Y   I G C+ +++DSA K       KG   +   Y+ LI+GLC   R
Sbjct: 244 IVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARR 303

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
           + EA++LF KM        + TY  LI      + +  A+ L++ +E    + NI  Y++
Sbjct: 304 IDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTV 363

Query: 116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
           +ID LC   ++E+AR+ L Q+ EKGL+P V+TYN LING CK+GMI +A  ++  M+ + 
Sbjct: 364 LIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRK 423

Query: 176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             P++ ++N +I+G+  K+   +A   L K
Sbjct: 424 LSPNTRTYNELIKGY-CKSNVHKAMGVLNK 452

Arabidopsis thaliana (taxid: 3702)

>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1

 Score =  120 bits (302), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 120/232 (51%), Gaps = 41/232 (17%)

Query: 14  VYGIRINGMCKIREIDSAI----KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ 69
            Y + I+G CK  EI++A+    +  +  DV  Y++++  LC   +LK+A+E+ D+M+ +
Sbjct: 174 TYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQR 233

Query: 70  -----------------------------------GITAELVTYNPLIHDNWEKQGRFS- 93
                                              G T ++VTYN L+ +   K+GR   
Sbjct: 234 DCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLV-NGICKEGRLDE 292

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
           A+  L  +     + N+  +++++  +C  GRW +A K L  +  KG  P VVT+NILIN
Sbjct: 293 AIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILIN 352

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            LC+KG++  A  +L +M + GC P+S S+N ++ GF  + + DRA  +L++
Sbjct: 353 FLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLER 404

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1

 Score =  120 bits (301), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 121/246 (49%), Gaps = 42/246 (17%)

Query: 2   DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
           ++ ++    +   Y   ING C    +D A       I K    +V  YS+LI G C   
Sbjct: 353 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAK 412

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIH--------DNWE------------------- 87
           R++E +ELF +M  +G+    VTY  LIH        DN +                   
Sbjct: 413 RVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYN 472

Query: 88  -------KQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK 139
                  K G+ + AM + + L+R   E +I  Y+++I+G+C+ G+ E+  +    LS K
Sbjct: 473 ILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLK 532

Query: 140 GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA 199
           G+ P V+ YN +I+G C+KG   EAD LL +MKE G  P+S ++NT+I+  L   + + +
Sbjct: 533 GVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREAS 592

Query: 200 SSFLKK 205
           +  +K+
Sbjct: 593 AELIKE 598

Arabidopsis thaliana (taxid: 3702)

>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1

 Score =  119 bits (299), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 111/185 (60%), Gaps = 7/185 (3%)

Query: 14  VYGIRINGMCK-------IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKM 66
           +Y + I+G+CK        + +D+   KG   +   Y++LI+GLC   +L +AV L ++M
Sbjct: 259 IYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERM 318

Query: 67  VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
           V+       VTY  LI+   +++    A+ LL ++E   Y LN  +YS++I GL + G+ 
Sbjct: 319 VSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKA 378

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           EEA     +++EKG  P +V Y++L++GLC++G   EA ++L +M   GC P++ +++++
Sbjct: 379 EEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSL 438

Query: 187 IQGFL 191
           ++GF 
Sbjct: 439 MKGFF 443

May play a role in embryogenesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1

 Score =  119 bits (298), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 110/198 (55%), Gaps = 10/198 (5%)

Query: 14  VYGIRINGMCKIREIDSA------IKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
            YG  +NG+CKI  +D+A      I K    ++ ++++LI+G  T  RL +A  +   MV
Sbjct: 324 TYGYLMNGLCKIGRVDAAKDLFYRIPKP---EIVIFNTLIHGFVTHGRLDDAKAVLSDMV 380

Query: 68  AQ-GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
              GI  ++ TYN LI+  W++     A+ +L  +     + N+  Y++++DG C++G+ 
Sbjct: 381 TSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKI 440

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           +EA   L+++S  GL P  V +N LI+  CK+  I EA ++  +M  KGC PD  +FN++
Sbjct: 441 DEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSL 500

Query: 187 IQGFLVKNETDRASSFLK 204
           I G    +E   A   L+
Sbjct: 501 ISGLCEVDEIKHALWLLR 518

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
225451354	744	PREDICTED: putative pentatricopeptide re	0.990	0.275	0.413	2e-38
147810269	1512	hypothetical protein VITISV_004157 [Viti	0.975	0.133	0.431	4e-38
147788022	585	hypothetical protein VITISV_032632 [Viti	0.990	0.350	0.399	5e-38
359488050	686	PREDICTED: pentatricopeptide repeat-cont	0.942	0.284	0.425	5e-38
297737176	572	unnamed protein product [Vitis vinifera]	0.975	0.353	0.426	1e-37
147771990	2021	hypothetical protein VITISV_022963 [Viti	0.990	0.101	0.413	1e-37
225452992	644	PREDICTED: putative pentatricopeptide re	0.942	0.302	0.415	1e-37
296087908	248	unnamed protein product [Vitis vinifera]	0.942	0.786	0.415	2e-37
359485438	572	PREDICTED: putative pentatricopeptide re	0.888	0.321	0.430	3e-37
147768816	653	hypothetical protein VITISV_031897 [Viti	0.946	0.300	0.389	6e-37

>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial-like [Vitis vinifera]

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 88/213 (41%), Positives = 130/213 (61%), Gaps = 8/213 (3%)

Query: 1   FDLTEQR-FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT 52
           FD+  ++ F  +   Y   ING CKI +ID A+       +K    D   Y++L++GLC 
Sbjct: 324 FDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCH 383

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             RL++A+ LF +MVA+G   +LVTY+ L+    +      AMALL+ +E      +I+V
Sbjct: 384 VGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQV 443

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+++IDG+CR G  E AR     LS KGL P V TYNI+I+GLCK+G++ EA+KL ++M 
Sbjct: 444 YNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMD 503

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              C PD  ++NT+ +GFL  NET RA   L++
Sbjct: 504 GNDCSPDGCTYNTIARGFLQNNETLRAIQLLEE 536

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]

 Score =  163 bits (413), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 91/211 (43%), Positives = 130/211 (61%), Gaps = 9/211 (4%)

Query: 3    LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
            L ++  K N   Y I ING CK ++ID A +       KG+      Y++LI  LC   R
Sbjct: 1251 LADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGR 1310

Query: 56   LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
            ++ A +LF +M   G   +L TY  L+ D   K G    AM L Q++++ +++ NIEV+S
Sbjct: 1311 VRTAQKLFVEMQTCGQFLKLSTYCVLL-DGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFS 1369

Query: 115  LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
            +++DG+CR G+ EEA K+ D++S+ GL P  + YNILINGLC KGM+ EA KLL QM+EK
Sbjct: 1370 ILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEK 1429

Query: 175  GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
            GC PDS +FN +IQ  L +NE   A   L++
Sbjct: 1430 GCLPDSITFNVIIQNLLKENEIHEAIQLLEE 1460

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]

 Score =  162 bits (411), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 85/213 (39%), Positives = 125/213 (58%), Gaps = 8/213 (3%)

Query: 1   FD-LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT 52
           FD +    +  N   Y   ING CKI+ +D A        +K +  +   Y++L++GLC 
Sbjct: 335 FDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCH 394

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             RL++A+ LF +MVA G   +L TY  L+    +K     AMALL+T+E    + +I++
Sbjct: 395 VGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQI 454

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y++VIDG+CR G  E AR     LS KGL P V TY I+INGLC++G++ EA+KL ++M 
Sbjct: 455 YTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMD 514

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             GC PD  ++NT+ QG L   E  RA   L++
Sbjct: 515 GNGCSPDGCTYNTITQGLLQNKEALRAIQLLQE 547

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488050|ref|XP_002263119.2| PREDICTED: pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like [Vitis vinifera]

 Score =  162 bits (411), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 86/202 (42%), Positives = 121/202 (59%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y I ING C+I+ +D A+        +G+  D   Y++LI+GLC   RL+ A+ LF
Sbjct: 429 NVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALF 488

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +MVA G   +LVTY  L+    +      AM LL+ +E    + +I VY++ IDG+CR 
Sbjct: 489 HEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRA 548

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  E AR     LS KGL P V TYNI+I+GLCK+G++ EA+KL  +M E GC  D   +
Sbjct: 549 GELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENGCSRDGCIY 608

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           NT+I+GFL  NET  A+  L++
Sbjct: 609 NTIIRGFLRSNETFGATQLLQE 630

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 90/211 (42%), Positives = 130/211 (61%), Gaps = 9/211 (4%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
           L ++  K N   Y I ING CK ++ID A +       KG+      Y++LI  LC   R
Sbjct: 312 LADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGR 371

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
           ++ A +LF +M   G   +L TY  L+ D   K G    A+ L Q++++ +++ NIEV+S
Sbjct: 372 VRTAQKLFVEMQTCGQFLKLSTYCVLL-DGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFS 430

Query: 115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
           +++DG+CR G+ EEA K+ D++S+ GL P  + YNILINGLC KGM+ EA KLL QM+EK
Sbjct: 431 ILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEK 490

Query: 175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
           GC PDS +FN +IQ  L +NE   A   L++
Sbjct: 491 GCLPDSITFNVIIQNLLKENEIHEAIQLLEE 521

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 88/213 (41%), Positives = 130/213 (61%), Gaps = 8/213 (3%)

Query: 1   FDLTEQR-FKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT 52
           FD+  ++ F  +   Y   ING CKI +ID A+       +K    D   Y++L+ GLC 
Sbjct: 333 FDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCH 392

Query: 53  FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV 112
             RL++A+ LF +MVA+G   +LVTY+ L+    + +    AMALL+ +E      +I+V
Sbjct: 393 VGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQV 452

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           Y+++IDG+CR G  E AR     LS KGL P V TYNI+I+GLCK+G++ EA+KL ++M 
Sbjct: 453 YNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMD 512

Query: 173 EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              C PD  ++NT+ +GFL  NET RA   L++
Sbjct: 513 GNDCSPDGCTYNTIARGFLQNNETLRAIQLLEE 545

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial-like [Vitis vinifera]

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 84/202 (41%), Positives = 122/202 (60%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ING CKI  +D A+       ++ +  +   Y++LI+GLC   RL++A+ LF
Sbjct: 353 NVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALF 412

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +MVA G   +LVTY  L+    +      AMALL+ +E    + +I++Y++VIDG+CR 
Sbjct: 413 REMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRA 472

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  E+AR     LS KGL P V TYNI+ +GLCK+G++ EA KL ++M E  C  D  ++
Sbjct: 473 GELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENACSADGCTY 532

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           NT+ QGFL  NET RA   L++
Sbjct: 533 NTITQGFLRNNETSRAIQLLEE 554

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087908|emb|CBI35191.3| unnamed protein product [Vitis vinifera]

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 84/202 (41%), Positives = 122/202 (60%), Gaps = 7/202 (3%)

Query: 11  NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N   Y   ING CKI  +D A+       ++ +  +   Y++LI+GLC   RL++A+ LF
Sbjct: 9   NVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALF 68

Query: 64  DKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV 123
            +MVA G   +LVTY  L+    +      AMALL+ +E    + +I++Y++VIDG+CR 
Sbjct: 69  REMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRA 128

Query: 124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSF 183
           G  E+AR     LS KGL P V TYNI+ +GLCK+G++ EA KL ++M E  C  D  ++
Sbjct: 129 GELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENACSADGCTY 188

Query: 184 NTVIQGFLVKNETDRASSFLKK 205
           NT+ QGFL  NET RA   L++
Sbjct: 189 NTITQGFLRNNETSRAIQLLEE 210

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial-like [Vitis vinifera]

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 83/193 (43%), Positives = 121/193 (62%), Gaps = 9/193 (4%)

Query: 15  YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
           Y   ING CKI+ +D A+       ++G+  D   Y++LI+GLC   RL++A+ LF +MV
Sbjct: 337 YTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMV 396

Query: 68  AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             G   +LVTY  ++ D   K  R + AM LL+ +E    + +I +YS+V+DG+CR G  
Sbjct: 397 VYGQIPDLVTYR-ILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGEL 455

Query: 127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
           E AR    +LS KGL P V TY I+INGLC++G++ EA KL  +M E GC P++ ++N +
Sbjct: 456 EAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENGCSPNACTYNLI 515

Query: 187 IQGFLVKNETDRA 199
            +GFL  NET RA
Sbjct: 516 TRGFLRNNETLRA 528

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]

 Score =  159 bits (402), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 79/203 (38%), Positives = 123/203 (60%), Gaps = 7/203 (3%)

Query: 10  GNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVEL 62
            N   Y   ING CKI+ +D A+       ++ +  +   Y++LI+GLC   RL++A+ L
Sbjct: 348 ANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISL 407

Query: 63  FDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR 122
           F +MVA+G   +LVTY  L     + +    AMALL+ +E   ++ +I++Y+ ++DG+CR
Sbjct: 408 FHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCR 467

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            G  E+AR     LS KGL P V TYNI+I+GLCK+G++ EA KL  +M + GC P+  +
Sbjct: 468 AGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCT 527

Query: 183 FNTVIQGFLVKNETDRASSFLKK 205
           +N + +GFL  NE  R    L++
Sbjct: 528 YNLITRGFLRNNEALRTIELLEE 550

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
TAIR|locus:2026172	485	NG1 "novel gene 1" [Arabidopsi	0.975	0.416	0.341	2e-29
TAIR|locus:2077061	619	AT3G22470 "AT3G22470" [Arabido	0.917	0.306	0.345	2.4e-29
TAIR|locus:2034760	637	AT1G12300 [Arabidopsis thalian	0.927	0.301	0.336	1.2e-28
TAIR|locus:2195047	621	AT1G12620 [Arabidopsis thalian	0.927	0.309	0.326	5.1e-28
TAIR|locus:2026207	548	AT1G62680 [Arabidopsis thalian	0.975	0.368	0.322	3.1e-27
TAIR|locus:2155730	915	AT5G65560 "AT5G65560" [Arabido	0.975	0.220	0.342	2e-26
TAIR|locus:2024296	598	AT1G09900 "AT1G09900" [Arabido	0.855	0.295	0.340	6.8e-26
TAIR|locus:2026192	630	RPF2 "rna processing factor 2"	0.917	0.301	0.331	1e-25
TAIR|locus:2174165	504	AT5G16640 [Arabidopsis thalian	0.985	0.404	0.331	1.6e-25
TAIR|locus:2031301	577	AT1G63400 [Arabidopsis thalian	0.985	0.353	0.312	2.1e-25

TAIR|locus:2026172 NG1 "novel gene 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 2.0e-29, P = 2.0e-29
 Identities = 72/211 (34%), Positives = 116/211 (54%)

Query:     3 LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
             + E  F+ +  +Y   I+G CKI  ++ A+       + G+  D   Y+SL+ GLC   R
Sbjct:   165 MEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGR 224

Query:    56 LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYS 114
               +A  L   MV + I   ++T+  +I D + K+G+FS AM L + + R   + ++  Y+
Sbjct:   225 WSDAARLMRDMVMRDIVPNVITFTAVI-DVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYN 283

Query:   115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
              +I+GLC  GR +EA++ LD +  KG +P VVTYN LING CK   + E  KL  +M ++
Sbjct:   284 SLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQR 343

Query:   175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             G   D+ ++NT+IQG+      D A     +
Sbjct:   344 GLVGDTITYNTIIQGYFQAGRPDAAQEIFSR 374

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0009845 "seed germination" evidence=IMP

TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 2.4e-29, P = 2.4e-29
 Identities = 69/200 (34%), Positives = 114/200 (57%)

Query:     1 FDLTEQR-FKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCT 52
             FDL   +  + +   Y I IN  CK + +D  ++       KG+  +   Y++L+ G C 
Sbjct:   373 FDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQ 432

Query:    53 FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIE 111
               +L  A ELF +MV++G+   +VTY  L+ D     G  + A+ + + +++ +  L I 
Sbjct:   433 SGKLNAAKELFQEMVSRGVPPSVVTYGILL-DGLCDNGELNKALEIFEKMQKSRMTLGIG 491

Query:   112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
             +Y+++I G+C   + ++A      LS+KG+ P VVTYN++I GLCKKG + EAD L  +M
Sbjct:   492 IYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKM 551

Query:   172 KEKGCFPDSTSFNTVIQGFL 191
             KE GC PD  ++N +I+  L
Sbjct:   552 KEDGCTPDDFTYNILIRAHL 571

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2034760 AT1G12300 [Arabidopsis thaliana (taxid:3702)]

 Score = 326 (119.8 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 69/205 (33%), Positives = 114/205 (55%)

Query:    11 NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
             N   + I ING CK   ID  ++       +G+  D   Y++LI G C   +L  A ELF
Sbjct:   402 NIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELF 461

Query:    64 DKMVAQGITAELVTYNPLIH---DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
              +MV++ +   +VTY  L+    DN E +    A+ + + +E+ K EL+I +Y+++I G+
Sbjct:   462 QEMVSRKVPPNIVTYKILLDGLCDNGESE---KALEIFEKIEKSKMELDIGIYNIIIHGM 518

Query:   121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
             C   + ++A      L  KG+ PGV TYNI+I GLCKKG + EA+ L  +M+E G  PD 
Sbjct:   519 CNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDG 578

Query:   181 TSFNTVIQGFLVKNETDRASSFLKK 205
              ++N +I+  L   +  ++   +++
Sbjct:   579 WTYNILIRAHLGDGDATKSVKLIEE 603

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2195047 AT1G12620 [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 5.1e-28, P = 5.1e-28
 Identities = 67/205 (32%), Positives = 117/205 (57%)

Query:    11 NFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELF 63
             N   + I ING CK   ID  ++       +G+  D   Y++LI G C   +L+ A ELF
Sbjct:   386 NIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELF 445

Query:    64 DKMVAQGITAELVTYNPLIH---DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL 120
              +MV++ +  ++V+Y  L+    DN E +    A+ + + +E+ K EL+I +Y+++I G+
Sbjct:   446 QEMVSRRVRPDIVSYKILLDGLCDNGEPE---KALEIFEKIEKSKMELDIGIYNIIIHGM 502

Query:   121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
             C   + ++A      L  KG+ P V TYNI+I GLCKKG + EAD L  +M+E G  P+ 
Sbjct:   503 CNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNG 562

Query:   181 TSFNTVIQGFLVKNETDRASSFLKK 205
              ++N +I+  L + +  +++  +++
Sbjct:   563 CTYNILIRAHLGEGDATKSAKLIEE 587

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026207 AT1G62680 [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 3.1e-27, P = 3.1e-27
 Identities = 68/211 (32%), Positives = 115/211 (54%)

Query:     3 LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
             + E  +K +   Y   I+ +CK + ++ A        +KGI  +V  Y++L+NGLC  +R
Sbjct:   181 MVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSR 240

Query:    56 LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR-FSAMALLQTLERDKYELNIEVYS 114
               +A  L   M+ + IT  ++TY+ L+ D + K G+   A  L + + R   + +I  YS
Sbjct:   241 WSDAARLLSDMIKKKITPNVITYSALL-DAFVKNGKVLEAKELFEEMVRMSIDPDIVTYS 299

Query:   115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
              +I+GLC   R +EA +  D +  KG +  VV+YN LING CK   + +  KL  +M ++
Sbjct:   300 SLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQR 359

Query:   175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             G   ++ ++NT+IQGF    + D+A  F  +
Sbjct:   360 GLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQ 390

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 2.0e-26, P = 2.0e-26
 Identities = 72/210 (34%), Positives = 117/210 (55%)

Query:     3 LTEQRFKGNFHVYGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNR 55
             + E     +F  Y   I G C+ +++DSA K       KG   +   Y+ LI+GLC   R
Sbjct:   244 IVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARR 303

Query:    56 LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL 115
             + EA++LF KM        + TY  LI      + +  A+ L++ +E    + NI  Y++
Sbjct:   304 IDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTV 363

Query:   116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG 175
             +ID LC   ++E+AR+ L Q+ EKGL+P V+TYN LING CK+GMI +A  ++  M+ + 
Sbjct:   364 LIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRK 423

Query:   176 CFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
               P++ ++N +I+G+  K+   +A   L K
Sbjct:   424 LSPNTRTYNELIKGYC-KSNVHKAMGVLNK 452

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 6.8e-26, P = 6.8e-26
 Identities = 61/179 (34%), Positives = 105/179 (58%)

Query:    28 IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
             +D  +++    DV  Y+ LI   C  + +  A++L D+M  +G T ++VTYN L++    
Sbjct:   227 LDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGIC- 285

Query:    88 KQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV 146
             K+GR   A+  L  +     + N+  +++++  +C  GRW +A K L  +  KG  P VV
Sbjct:   286 KEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVV 345

Query:   147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             T+NILIN LC+KG++  A  +L +M + GC P+S S+N ++ GF  + + DRA  +L++
Sbjct:   346 TFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLER 404

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.0e-25, P = 1.0e-25
 Identities = 66/199 (33%), Positives = 109/199 (54%)

Query:    15 YGIRINGMCKIREIDSAIK-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
             Y   I G CK + ++  ++       +G+  +   Y+ LI GL        A E+F +MV
Sbjct:   399 YNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMV 458

Query:    68 AQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW 126
             + G+   ++TYN L+ D   K G+   AM + + L+R K E  I  Y+++I+G+C+ G+ 
Sbjct:   459 SDGVPPNIMTYNTLL-DGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKV 517

Query:   127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV 186
             E+       LS KG+ P VV YN +I+G C+KG   EAD L  +MKE G  P+S  +NT+
Sbjct:   518 EDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTL 577

Query:   187 IQGFLVKNETDRASSFLKK 205
             I+  L   + + ++  +K+
Sbjct:   578 IRARLRDGDREASAELIKE 596

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0000966 "RNA 5'-end processing" evidence=IMP

GO:0003723 "RNA binding" evidence=IDA

TAIR|locus:2174165 AT5G16640 [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 1.6e-25, P = 1.6e-25
 Identities = 71/214 (33%), Positives = 114/214 (53%)

Query:     1 FD-LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT 52
             FD +    +K N  +Y   I+G+CK +++D+A+       K GI  DV  Y+SLI+GLC+
Sbjct:   174 FDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCS 233

Query:    53 FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS-AMALLQTLERDKYELNIE 111
               R  +A  +   M  + I  ++ T+N LI D   K+GR S A    + + R   + +I 
Sbjct:   234 SGRWSDATRMVSCMTKREIYPDVFTFNALI-DACVKEGRVSEAEEFYEEMIRRSLDPDIV 292

Query:   112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
              YSL+I GLC   R +EA +    +  KG  P VVTY+ILING CK   +    KL  +M
Sbjct:   293 TYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEM 352

Query:   172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
              ++G   ++ ++  +IQG+    + + A    ++
Sbjct:   353 SQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRR 386

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2031301 AT1G63400 [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 2.1e-25, P = 2.1e-25
 Identities = 66/211 (31%), Positives = 105/211 (49%)

Query:     2 DLTEQRFKGNFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFN 54
             ++ ++    +   Y   ING C    +D A       I K    +V  Y++LING C   
Sbjct:   355 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAK 414

Query:    55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS 114
             R+ E VELF +M  +G+    VTY  LIH  ++ +   +A  + + +  D    NI  Y+
Sbjct:   415 RIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYN 474

Query:   115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK 174
              ++DGLC+ G+ E+A    + L    + P + TYNI+I G+CK G + +   L   +  K
Sbjct:   475 TLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK 534

Query:   175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKK 205
             G  PD   +NT+I GF  K   + A +  +K
Sbjct:   535 GVKPDVIIYNTMISGFCRKGLKEEADALFRK 565

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00007433001 SubName- Full=Chromosome chr14 scaffold_190, whole genome shotgun sequence; (562 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	207
pfam13041	50	pfam13041, PPR_2, PPR repeat family	7e-17
pfam13041	50	pfam13041, PPR_2, PPR repeat family	6e-14
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	5e-12
pfam12854	34	pfam12854, PPR_1, PPR repeat	1e-11
pfam13041	50	pfam13041, PPR_2, PPR repeat family	8e-10
pfam12854	34	pfam12854, PPR_1, PPR repeat	9e-10
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	6e-09
pfam01535	31	pfam01535, PPR, PPR repeat	5e-08
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	6e-07
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	1e-06
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	7e-06
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	2e-05
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-05
pfam01535	31	pfam01535, PPR, PPR repeat	6e-05
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	6e-05
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	1e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	1e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	2e-04
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	2e-04
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	3e-04
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	4e-04
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	5e-04
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	0.004

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 70.9 bits (175), Expect = 7e-17
 Identities = 23/48 (47%), Positives = 33/48 (68%)

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
           P VVTYN LI+G CKKG + EA KL  +MK++G  P+  +++ +I G 
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 63.2 bits (155), Expect = 6e-14
 Identities = 22/49 (44%), Positives = 36/49 (73%)

Query: 109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK 157
           ++  Y+ +IDG C+ G+ EEA K  +++ ++G+ P V TY+ILI+GLCK
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 63.7 bits (155), Expect = 5e-12
 Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 17/189 (8%)

Query: 3   LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR 55
           + E   KG   VY I +N   +  + D A+       KKG+  D   +S+L++       
Sbjct: 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD 664

Query: 56  LKEAVELFDKMVAQGITAELVTYNPLI-----HDNWEKQGRFSAMALLQTLERDKYELNI 110
           L +A E+      QGI    V+Y+ L+       NW+K     A+ L + ++  K    +
Sbjct: 665 LDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKK-----ALELYEDIKSIKLRPTV 719

Query: 111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ 170
              + +I  LC   +  +A + L ++   GL P  +TY+IL+    +K        LL Q
Sbjct: 720 STMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQ 779

Query: 171 MKEKGCFPD 179
            KE G  P+
Sbjct: 780 AKEDGIKPN 788

Length = 1060

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 56.6 bits (138), Expect = 1e-11
 Identities = 20/34 (58%), Positives = 26/34 (76%)

Query: 139 KGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
           KGL P VVTYN LI+GLC+ G + EA +LL +M+
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 52.0 bits (126), Expect = 8e-10
 Identities = 18/45 (40%), Positives = 31/45 (68%)

Query: 39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH 83
          DV  Y++LI+G C   +++EA++LF++M  +GI   + TY+ LI 
Sbjct: 2  DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 51.6 bits (125), Expect = 9e-10
 Identities = 18/34 (52%), Positives = 24/34 (70%)

Query: 34 KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMV 67
          KG+  DV  Y++LI+GLC   R+ EAVEL D+M 
Sbjct: 1  KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 49.8 bits (120), Expect = 6e-09
 Identities = 20/35 (57%), Positives = 25/35 (71%)

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS 180
           VTYN LI+GLCK G + EA +L  +MKE+G  PD 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 47.1 bits (113), Expect = 5e-08
 Identities = 18/31 (58%), Positives = 22/31 (70%)

Query: 146 VTYNILINGLCKKGMIMEADKLLVQMKEKGC 176
           VTYN LI+G CK G + EA +L  +MKEKG 
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 49.1 bits (117), Expect = 6e-07
 Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 1/131 (0%)

Query: 28  IDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE 87
           +  A K+GI L    YSSL+         K+A+EL++ + +  +   + T N LI    E
Sbjct: 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE 731

Query: 88  KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
                 A+ +L  ++R     N   YS+++    R    +     L Q  E G+ P +V 
Sbjct: 732 GNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVM 791

Query: 148 YNILINGLCKK 158
              +  GLC +
Sbjct: 792 CRCIT-GLCLR 801

Length = 1060

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 38/155 (24%), Positives = 74/155 (47%), Gaps = 18/155 (11%)

Query: 40  VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ 99
              ++S++ G       +EA+ L+ +M   G++ +  T++ +I         FS +ALL+
Sbjct: 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI-------RIFSRLALLE 342

Query: 100 -------TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI 152
                   L R  + L+I   + ++D   + GR E+AR   D++  K L    +++N LI
Sbjct: 343 HAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL----ISWNALI 398

Query: 153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
            G    G   +A ++  +M  +G  P+  +F  V+
Sbjct: 399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVL 433

Length = 697

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 45.6 bits (108), Expect = 7e-06
 Identities = 29/125 (23%), Positives = 58/125 (46%)

Query: 59  AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID 118
           A+ ++D M  +G+  + V ++ L+           A  +LQ   +   +L    YS ++ 
Sbjct: 633 ALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG 692

Query: 119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
                  W++A +  + +    L P V T N LI  LC+   + +A ++L +MK  G  P
Sbjct: 693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752

Query: 179 DSTSF 183
           ++ ++
Sbjct: 753 NTITY 757

Length = 1060

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 39.9 bits (94), Expect = 2e-05
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP 178
           + TYN L+  L K G    A  +L +MK  G  P
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 39.7 bits (94), Expect = 3e-05
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 7/44 (15%)

Query: 15 YGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLC 51
          Y   I+G CK  +++ A+       K+GI  +V+ YS LI+GLC
Sbjct: 6  YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 38.6 bits (91), Expect = 6e-05
 Identities = 14/31 (45%), Positives = 22/31 (70%)

Query: 41 FVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
            Y+SLI+G C   +L+EA+ELF +M  +G+
Sbjct: 1  VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 42.9 bits (101), Expect = 6e-05
 Identities = 41/156 (26%), Positives = 67/156 (42%), Gaps = 12/156 (7%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL 98
           ++  + ++I GL      +EA  LF +M   G  AE  T+  ++       G  SA A  
Sbjct: 188 NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLR---ASAGLGSARAGQ 244

Query: 99  Q----TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING 154
           Q     L+      +  V   +ID   + G  E+AR   D + EK      V +N ++ G
Sbjct: 245 QLHCCVLKTGVVG-DTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAG 299

Query: 155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF 190
               G   EA  L  +M++ G   D  +F+ +I+ F
Sbjct: 300 YALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF 335

Length = 697

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 41/196 (20%), Positives = 88/196 (44%), Gaps = 29/196 (14%)

Query: 11  NFHVYGIRINGMCKIREIDSA-------IKKGICLDVFVYSSLINGLCTFNRLKEAVELF 63
           N H +G  I+G  +  ++  A         K +  D  V+++LI+       +  A ++ 
Sbjct: 506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVL 565

Query: 64  DKMVAQG--ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK------YELNI----E 111
            +M A+   I  + +T   L+           A A    ++R K      +E NI    E
Sbjct: 566 AEMKAETHPIDPDHITVGALM----------KACANAGQVDRAKEVYQMIHEYNIKGTPE 615

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM 171
           VY++ ++   + G W+ A    D + +KG+ P  V ++ L++     G + +A ++L   
Sbjct: 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA 675

Query: 172 KEKGCFPDSTSFNTVI 187
           +++G    + S+++++
Sbjct: 676 RKQGIKLGTVSYSSLM 691

Length = 1060

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 37.4 bits (88), Expect = 1e-04
 Identities = 15/31 (48%), Positives = 23/31 (74%)

Query: 41 FVYSSLINGLCTFNRLKEAVELFDKMVAQGI 71
            Y++LI+GLC   R++EA+ELF +M  +GI
Sbjct: 1  VTYNTLIDGLCKAGRVEEALELFKEMKERGI 31

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 37.4 bits (88), Expect = 2e-04
 Identities = 15/34 (44%), Positives = 23/34 (67%)

Query: 112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV 145
            Y+ +IDGLC+ GR EEA +   ++ E+G+ P V
Sbjct: 2   TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 5/145 (3%)

Query: 45  SLINGLCTFNRLKEAVELFDKMVAQG-ITAELVTYNPLIHDNWEKQGRFSAMALLQTLER 103
           S I  L    R +EA+ELF+ + A    T    TY+ L+      +      A+   +E 
Sbjct: 92  SQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVES 151

Query: 104 DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME 163
             +E +  + + V+    + G   +AR+  D++ E+ L     ++  +I GL   G   E
Sbjct: 152 SGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLA----SWGTIIGGLVDAGNYRE 207

Query: 164 ADKLLVQMKEKGCFPDSTSFNTVIQ 188
           A  L  +M E G   +  +F  +++
Sbjct: 208 AFALFREMWEDGSDAEPRTFVVMLR 232

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 48/181 (26%), Positives = 72/181 (39%), Gaps = 35/181 (19%)

Query: 19  INGMCKIREIDSAIKKGICL---DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL 75
           I    K + ID A++    +   DV  ++S+I GL   NR  EA+  F +M+   +    
Sbjct: 431 IEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNS 489

Query: 76  VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL-------------VIDGLCR 122
           VT    +          SA A +  L   K    I  + L             ++D   R
Sbjct: 490 VTLIAAL----------SACARIGALMCGK---EIHAHVLRTGIGFDGFLPNALLDLYVR 536

Query: 123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS 182
            GR   A  + +   EK     VV++NIL+ G    G    A +L  +M E G  PD  +
Sbjct: 537 CGRMNYAWNQFN-SHEK----DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT 591

Query: 183 F 183
           F
Sbjct: 592 F 592

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 24/127 (18%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPL---------IHDNWEKQ 89
           DV  ++ L+ G     +   AVELF++MV  G+  + VT+  L         +    E  
Sbjct: 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLE-- 610

Query: 90  GRFSAMALLQTLERDKYEL--NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVT 147
             F +M        +KY +  N++ Y+ V+D L R G+  EA   ++++      P    
Sbjct: 611 -YFHSM-------EEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPIT---PDPAV 659

Query: 148 YNILING 154
           +  L+N 
Sbjct: 660 WGALLNA 666

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 13/183 (7%)

Query: 26  REIDS-AIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD 84
           RE+    +K G  +DV V +SLI    +     EA ++F +M     T + V++  +I  
Sbjct: 308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMI-S 362

Query: 85  NWEKQG-RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE-KGLV 142
            +EK G    A+     +E+D    +    + V+     +G  +    KL +L+E KGL+
Sbjct: 363 GYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVG-VKLHELAERKGLI 421

Query: 143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF 202
             VV  N LI    K   I +A ++   + EK    D  S+ ++I G  + N    A  F
Sbjct: 422 SYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIF 477

Query: 203 LKK 205
            ++
Sbjct: 478 FRQ 480

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 37.5 bits (87), Expect = 0.004
 Identities = 33/154 (21%), Positives = 71/154 (46%), Gaps = 14/154 (9%)

Query: 39  DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD-----NWEKQGRFS 93
           D+F ++ L+ G        EA+ L+ +M+  G+  ++ T+  ++       +   +GR  
Sbjct: 151 DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL-ARGREV 209

Query: 94  AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN 153
              ++    R  +EL+++V + +I    + G    AR   D++         +++N +I+
Sbjct: 210 HAHVV----RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMIS 261

Query: 154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI 187
           G  + G  +E  +L   M+E    PD  +  +VI
Sbjct: 262 GYFENGECLEGLELFFTMRELSVDPDLMTITSVI 295

Length = 857

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	207
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.77
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.74
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.69
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.67
PF13041	50	PPR_2: PPR repeat family	99.65
PF13041	50	PPR_2: PPR repeat family	99.64
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.59
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.57
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.56
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.5
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.49
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.48
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.47
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.46
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.44
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.43
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.38
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.34
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.34
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.33
PRK12370	553	invasion protein regulator; Provisional	99.31
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.29
PRK12370	553	invasion protein regulator; Provisional	99.29
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.26
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.25
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.24
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.23
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.23
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.21
KOG1126	638	consensus DNA-binding cell division cycle control	99.2
PF12854	34	PPR_1: PPR repeat	99.17
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.17
PF12854	34	PPR_1: PPR repeat	99.16
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.16
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.16
KOG1126	638	consensus DNA-binding cell division cycle control	99.15
KOG1129	478	consensus TPR repeat-containing protein [General f	99.11
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.11
KOG1129	478	consensus TPR repeat-containing protein [General f	99.11
PRK11189	296	lipoprotein NlpI; Provisional	99.1
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.1
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.08
PRK14574	822	hmsH outer membrane protein; Provisional	99.07
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.03
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.01
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	98.99
PRK14574	822	hmsH outer membrane protein; Provisional	98.97
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.97
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.96
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.95
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.91
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.89
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.89
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.88
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.88
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.86
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.85
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.83
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.8
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.8
PRK15359	144	type III secretion system chaperone protein SscB;	98.8
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.79
PRK11189	296	lipoprotein NlpI; Provisional	98.78
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.78
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.77
KOG2003	840	consensus TPR repeat-containing protein [General f	98.76
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.76
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.75
PRK15359	144	type III secretion system chaperone protein SscB;	98.74
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.72
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.72
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.72
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.71
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.71
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.69
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.69
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.67
KOG2003	840	consensus TPR repeat-containing protein [General f	98.66
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.66
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.65
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.65
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.61
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.61
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.61
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.58
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.55
KOG2076	895	consensus RNA polymerase III transcription factor	98.54
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.52
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.52
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.51
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.51
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.5
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.49
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.47
KOG2076	895	consensus RNA polymerase III transcription factor	98.47
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.47
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.46
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.46
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.44
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.44
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.43
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	98.41
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	98.4
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.39
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.37
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.35
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.35
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.34
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.34
PLN02789	320	farnesyltranstransferase	98.34
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.32
KOG1125	579	consensus TPR repeat-containing protein [General f	98.31
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.3
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.28
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.26
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.26
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.25
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.24
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.23
PLN02789	320	farnesyltranstransferase	98.22
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.22
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.19
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.18
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.17
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.16
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.15
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.14
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.14
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.13
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.12
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.08
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.07
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.05
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.04
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.01
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.99
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.98
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.92
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.9
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.9
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.85
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	97.85
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.84
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.83
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.82
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.81
KOG1125	579	consensus TPR repeat-containing protein [General f	97.8
PRK04841	903	transcriptional regulator MalT; Provisional	97.76
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.75
PRK04841	903	transcriptional regulator MalT; Provisional	97.75
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.74
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.74
PF12688	120	TPR_5: Tetratrico peptide repeat	97.73
PRK10803	263	tol-pal system protein YbgF; Provisional	97.72
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.72
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	97.69
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.67
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.67
KOG3616	1636	consensus Selective LIM binding factor [Transcript	97.66
KOG0553	304	consensus TPR repeat-containing protein [General f	97.65
KOG3616	1636	consensus Selective LIM binding factor [Transcript	97.65
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.64
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.64
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.61
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.59
KOG2047	835	consensus mRNA splicing factor [RNA processing and	97.56
KOG3941	406	consensus Intermediate in Toll signal transduction	97.55
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.55
KOG2047	835	consensus mRNA splicing factor [RNA processing and	97.55
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.52
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	97.5
PRK10803	263	tol-pal system protein YbgF; Provisional	97.49
KOG0553	304	consensus TPR repeat-containing protein [General f	97.48
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.47
PF13371	73	TPR_9: Tetratricopeptide repeat	97.47
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.44
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	97.42
PRK15331	165	chaperone protein SicA; Provisional	97.38
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.38
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.36
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.36
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.34
PF12688	120	TPR_5: Tetratrico peptide repeat	97.33
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.32
KOG3941	406	consensus Intermediate in Toll signal transduction	97.3
PRK15331	165	chaperone protein SicA; Provisional	97.28
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.26
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.25
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.2
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.2
PF13371	73	TPR_9: Tetratricopeptide repeat	97.18
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.16
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.13
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.07
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.06
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.06
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.05
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.03
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.98
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.91
smart00299	140	CLH Clathrin heavy chain repeat homology.	96.84
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.84
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	96.83
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	96.81
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.77
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.66
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.63
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.63
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.62
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.61
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.52
COG3629	280	DnrI DNA-binding transcriptional activator of the	96.5
PF13512	142	TPR_18: Tetratricopeptide repeat	96.48
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.48
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.45
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	96.4
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.37
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.28
smart00299	140	CLH Clathrin heavy chain repeat homology.	96.28
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.24
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.21
COG3629	280	DnrI DNA-binding transcriptional activator of the	96.2
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.16
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	96.06
KOG4570	418	consensus Uncharacterized conserved protein [Funct	96.06
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.04
KOG1585	308	consensus Protein required for fusion of vesicles	96.01
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.96
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.95
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.91
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.9
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.88
KOG2041	1189	consensus WD40 repeat protein [General function pr	95.85
KOG4570	418	consensus Uncharacterized conserved protein [Funct	95.8
PF13428	44	TPR_14: Tetratricopeptide repeat	95.73
PF13428	44	TPR_14: Tetratricopeptide repeat	95.71
PF13929	292	mRNA_stabil: mRNA stabilisation	95.66
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.57
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.45
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	95.42
PF13512	142	TPR_18: Tetratricopeptide repeat	95.37
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	95.25
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	95.24
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	95.17
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.15
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	95.13
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.1
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.07
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.91
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	94.9
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	94.68
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	94.62
COG1747	711	Uncharacterized N-terminal domain of the transcrip	94.59
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	94.42
KOG4555	175	consensus TPR repeat-containing protein [Function	94.31
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	94.22
COG0457	291	NrfG FOG: TPR repeat [General function prediction	94.21
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	94.17
PF13431	34	TPR_17: Tetratricopeptide repeat	93.94
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	93.87
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	93.82
COG4455	273	ImpE Protein of avirulence locus involved in tempe	93.56
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.41
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.38
COG3118	304	Thioredoxin domain-containing protein [Posttransla	93.21
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	93.11
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	92.52
PF13929	292	mRNA_stabil: mRNA stabilisation	92.31
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	92.14
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	92.07
COG0457	291	NrfG FOG: TPR repeat [General function prediction	91.92
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	91.91
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	91.75
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	91.74
COG4455	273	ImpE Protein of avirulence locus involved in tempe	91.7
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	91.67
KOG4555	175	consensus TPR repeat-containing protein [Function	91.58
PF13762	145	MNE1: Mitochondrial splicing apparatus component	91.58
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	91.56
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	91.25
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	91.18
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	91.14
KOG2610	491	consensus Uncharacterized conserved protein [Funct	91.08
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	91.06
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	91.01
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	90.61
PHA02875	413	ankyrin repeat protein; Provisional	90.51
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	90.4
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	90.34
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	90.24
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	90.18
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	89.9
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	89.81
COG4105	254	ComL DNA uptake lipoprotein [General function pred	89.63
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	89.62
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	89.61
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	89.47
PF13762	145	MNE1: Mitochondrial splicing apparatus component	89.32
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	89.31
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	89.27
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	89.06
COG0735	145	Fur Fe2+/Zn2+ uptake regulation proteins [Inorgani	88.9
PF14689	62	SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical do	88.8
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	88.71
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	88.4
KOG4077	149	consensus Cytochrome c oxidase, subunit Va/COX6 [E	88.3
PF11663	140	Toxin_YhaV: Toxin with endonuclease activity YhaV;	87.97
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	87.93
PRK11906	458	transcriptional regulator; Provisional	87.66
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	87.37
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	87.27
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	87.27
PF11848	48	DUF3368: Domain of unknown function (DUF3368); Int	87.19
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	87.01
COG3947	361	Response regulator containing CheY-like receiver a	86.97
PRK11906	458	transcriptional regulator; Provisional	86.27
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	86.11
PF11848	48	DUF3368: Domain of unknown function (DUF3368); Int	86.07
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	85.64
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	85.47
PF14689	62	SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical do	85.19
cd08819	88	CARD_MDA5_2 Caspase activation and recruitment dom	85.05
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	85.03
PRK11639	169	zinc uptake transcriptional repressor; Provisional	84.89
COG0735	145	Fur Fe2+/Zn2+ uptake regulation proteins [Inorgani	84.44
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	84.34
KOG4648	536	consensus Uncharacterized conserved protein, conta	84.03
PF11663	140	Toxin_YhaV: Toxin with endonuclease activity YhaV;	83.66
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	83.64
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	82.65
PRK10564	303	maltose regulon periplasmic protein; Provisional	82.5
KOG4077	149	consensus Cytochrome c oxidase, subunit Va/COX6 [E	82.47
KOG4648	536	consensus Uncharacterized conserved protein, conta	82.23
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	82.07
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	82.06
PRK09462	148	fur ferric uptake regulator; Provisional	82.06
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	81.94
PF09454	65	Vps23_core: Vps23 core domain; InterPro: IPR017916	81.46
KOG4567	370	consensus GTPase-activating protein [General funct	81.38
COG5159	421	RPN6 26S proteasome regulatory complex component [	81.37
COG3947	361	Response regulator containing CheY-like receiver a	81.35
PRK10564	303	maltose regulon periplasmic protein; Provisional	80.9
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	80.59
PF12926	88	MOZART2: Mitotic-spindle organizing gamma-tubulin	80.23
PF09454	65	Vps23_core: Vps23 core domain; InterPro: IPR017916	80.05

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1e-41  Score=277.47  Aligned_cols=204  Identities=19%  Similarity=0.283  Sum_probs=113.1

Q ss_pred             ccccccccchhhhHHHHHhhhhhhhHHHHH-------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcch
Q 045498            3 LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL   75 (207)
Q Consensus         3 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~-------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~   75 (207)
                      |.+.|+.||..+|+.+|.+|++.|++++|.       ..|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus       463 M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~  542 (1060)
T PLN03218        463 VQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR  542 (1060)
T ss_pred             HHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH
Confidence            445555555555555555555555555554       4555555555555555555555555555555555555555555


Q ss_pred             hhHHHHHhhHhhhcChhhHHHHHHHHHh--CCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 045498           76 VTYNPLIHDNWEKQGRFSAMALLQTLER--DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN  153 (207)
Q Consensus        76 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~  153 (207)
                      .+|+.+|.+|++.|++++|.++|++|.+  .|+.||..+|+++|.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.
T Consensus       543 vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~  622 (1060)
T PLN03218        543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN  622 (1060)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence            5555555555555555555555555543  34555555555555555555555555555555555555555555555555


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       154 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      +|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|
T Consensus       623 ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM  675 (1060)
T PLN03218        623 SCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA  675 (1060)
T ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            55555555555555555555555555555555555555555555555555544

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.2e-41  Score=277.10  Aligned_cols=204  Identities=16%  Similarity=0.219  Sum_probs=100.9

Q ss_pred             ccccccccchhhhHHHHHhhhhhhhHHHHH-------H--cCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc
Q 045498            3 LTEQRFKGNFHVYGIRINGMCKIREIDSAI-------K--KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITA   73 (207)
Q Consensus         3 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~-------~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~   73 (207)
                      |.+.|+.||..+|+.+|.+|++.|++++|.       .  .++.||..+|+++|.+|++.|++++|.++|++|.+.|++|
T Consensus       533 M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p  612 (1060)
T PLN03218        533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG  612 (1060)
T ss_pred             HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence            334444444444444444444444444444       1  3344455555555555555555555555555554444444


Q ss_pred             chhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 045498           74 ELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN  153 (207)
Q Consensus        74 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~  153 (207)
                      +..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.+|.
T Consensus       613 ~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~  692 (1060)
T PLN03218        613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG  692 (1060)
T ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            44555555555555555555555555555555455555555555555555555555555555554454455555555555


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       154 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      +|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus       693 ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM  745 (1060)
T PLN03218        693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM  745 (1060)
T ss_pred             HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            55555555555555555544444555555555555555555555555555444

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1.7e-39  Score=260.24  Aligned_cols=200  Identities=19%  Similarity=0.255  Sum_probs=174.0

Q ss_pred             ccccccccchhhhHHHHHhhhhhhhHHHHH---HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHH
Q 045498            3 LTEQRFKGNFHVYGIRINGMCKIREIDSAI---KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYN   79 (207)
Q Consensus         3 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~---~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~   79 (207)
                      +.+.|+.||..+|++++++|++.|++++|.   +.-.++|..+||++|.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus       250 ~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~  329 (697)
T PLN03081        250 VLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFS  329 (697)
T ss_pred             HHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence            456788889999999999999999999998   56667899999999999999999999999999999999999999999


Q ss_pred             HHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 045498           80 PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG  159 (207)
Q Consensus        80 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~  159 (207)
                      .++.+|++.|++++|.+++..|.+.|+.|+..+|++++++|++.|++++|.++|++|.+    ||..+||+||.+|++.|
T Consensus       330 ~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G  405 (697)
T PLN03081        330 IMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHG  405 (697)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcC
Confidence            99999999999999999999999999888888888888888888888888888887764    57778888888888888


Q ss_pred             CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       160 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      +.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|
T Consensus       406 ~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m  452 (697)
T PLN03081        406 RGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM  452 (697)
T ss_pred             CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888776

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=3.4e-37  Score=246.97  Aligned_cols=194  Identities=16%  Similarity=0.263  Sum_probs=164.1

Q ss_pred             ccchhhhHHHHHhhhhhhhHHHHH-------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHH
Q 045498            9 KGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPL   81 (207)
Q Consensus         9 ~p~~~~~~~ll~~~~~~g~~~~a~-------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l   81 (207)
                      .+|..+||++|.+|++.|++++|.       ..|+.||..||++++.+|++.|++++|.+++.+|.+.|++||..+|+.|
T Consensus       287 ~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~L  366 (697)
T PLN03081        287 EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL  366 (697)
T ss_pred             CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHH
Confidence            467888888888888888888877       6788888888888888888888888888888888888888888888888


Q ss_pred             HhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 045498           82 IHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI  161 (207)
Q Consensus        82 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~  161 (207)
                      +.+|++.|++++|.++|++|.+    ||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|..
T Consensus       367 i~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~  442 (697)
T PLN03081        367 VDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLS  442 (697)
T ss_pred             HHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcH
Confidence            8888888888888888888763    577788888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHH-cCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          162 MEADKLLVQMKE-KGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       162 ~~a~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      ++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.+++++|
T Consensus       443 ~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~  488 (697)
T PLN03081        443 EQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA  488 (697)
T ss_pred             HHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC
Confidence            888888888875 578888888888888888888888888888775

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=5.9e-37  Score=250.51  Aligned_cols=204  Identities=17%  Similarity=0.200  Sum_probs=151.2

Q ss_pred             ccccccccchhhhHHHHHhhhhhhhHHHHH---HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHH
Q 045498            3 LTEQRFKGNFHVYGIRINGMCKIREIDSAI---KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYN   79 (207)
Q Consensus         3 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~---~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~   79 (207)
                      |.+.|+.||..+||+++.+|++.|++++|.   +.-..||..+|+++|.+|.+.|++++|+++|++|.+.|+.||..||+
T Consensus       314 ~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~  393 (857)
T PLN03077        314 VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIA  393 (857)
T ss_pred             HHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHH
Confidence            456788888888888888888888888888   55567888889999999999999999999999998888888888888


Q ss_pred             HHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC-------------------
Q 045498           80 PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG-------------------  140 (207)
Q Consensus        80 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g-------------------  140 (207)
                      .++.+|++.|+.++|.++++.+.+.|+.|+..+|++++++|++.|++++|.++|++|.+.+                   
T Consensus       394 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~e  473 (857)
T PLN03077        394 SVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFE  473 (857)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHH
Confidence            8888888888877777777777777777666666666666666666666666655553321                   


Q ss_pred             -----------C-----------------------------------------------------------------CCC
Q 045498          141 -----------L-----------------------------------------------------------------VPG  144 (207)
Q Consensus       141 -----------~-----------------------------------------------------------------~~~  144 (207)
                                 +                                                                 .||
T Consensus       474 A~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d  553 (857)
T PLN03077        474 ALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKD  553 (857)
T ss_pred             HHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCC
Confidence                       1                                                                 234


Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       145 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      ..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|
T Consensus       554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M  615 (857)
T PLN03077        554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSM  615 (857)
T ss_pred             hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHH
Confidence            44566666666666666667777777766666777777777777777777777777666665

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=9.9e-37  Score=249.21  Aligned_cols=200  Identities=18%  Similarity=0.244  Sum_probs=163.1

Q ss_pred             ccccccccchhhhHHHHHhhhhhhhHHHHH---HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHH
Q 045498            3 LTEQRFKGNFHVYGIRINGMCKIREIDSAI---KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYN   79 (207)
Q Consensus         3 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~---~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~   79 (207)
                      |.+.|+.||..+||.+|.+|++.|+++.|.   +.-..||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+
T Consensus       213 ~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~  292 (857)
T PLN03077        213 VVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTIT  292 (857)
T ss_pred             HHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHH
Confidence            456677788888888999999999999988   56667899999999999999999999999999999999999999999


Q ss_pred             HHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 045498           80 PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG  159 (207)
Q Consensus        80 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~  159 (207)
                      .++.+|++.|+.+.+.+++..|.+.|+.||..+|++++.+|++.|++++|.++|++|..    ||..+|+.+|.+|++.|
T Consensus       293 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g  368 (857)
T PLN03077        293 SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNG  368 (857)
T ss_pred             HHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCC
Confidence            99999999999999999999999999888888888888888888888888888877753    56677777777777777


Q ss_pred             CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       160 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      ++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++++|
T Consensus       369 ~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~  415 (857)
T PLN03077        369 LPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELA  415 (857)
T ss_pred             CHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHH
Confidence            77777777777777777777766666666666666666666555544

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.77  E-value=4.4e-16  Score=117.85  Aligned_cols=191  Identities=14%  Similarity=0.063  Sum_probs=113.2

Q ss_pred             hhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcch----hhHHHHH
Q 045498           13 HVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL----VTYNPLI   82 (207)
Q Consensus        13 ~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll   82 (207)
                      ..+..+...|.+.|++++|.      ....+++..++..+...+.+.|++++|.+.++.+.+.+..++.    ..+..+.
T Consensus       108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la  187 (389)
T PRK11788        108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA  187 (389)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            34555666666666666665      1112234556666666666666666666666666654322211    1234445


Q ss_pred             hhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 045498           83 HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM  162 (207)
Q Consensus        83 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~  162 (207)
                      ..+...|++++|...++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.+......+++.++.+|...|+++
T Consensus       188 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~  266 (389)
T PRK11788        188 QQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEA  266 (389)
T ss_pred             HHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHH
Confidence            55566666666666666666543 22344555666666667777777777776665532222345666666777777777


Q ss_pred             HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       163 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      +|...++++.+.  .|+...+..+...+.+.|++++|..+++++
T Consensus       267 ~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~  308 (389)
T PRK11788        267 EGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQ  308 (389)
T ss_pred             HHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            777777766654  345555566666677777777777766654

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.74  E-value=2.2e-15  Score=114.08  Aligned_cols=193  Identities=17%  Similarity=0.104  Sum_probs=159.6

Q ss_pred             cchhhhHHHHHhhhhhhhHHHHH-------HcCCCcc----HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhH
Q 045498           10 GNFHVYGIRINGMCKIREIDSAI-------KKGICLD----VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTY   78 (207)
Q Consensus        10 p~~~~~~~ll~~~~~~g~~~~a~-------~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~   78 (207)
                      ++..+++.++..+.+.|++++|.       ..+..++    ...+..+...+.+.|++++|...|+++.+.. +.+...+
T Consensus       139 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~  217 (389)
T PRK11788        139 FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRAS  217 (389)
T ss_pred             chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHH
Confidence            45678999999999999999998       2222221    2345667778889999999999999998764 3455678


Q ss_pred             HHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 045498           79 NPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK  158 (207)
Q Consensus        79 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~  158 (207)
                      ..+...+.+.|++++|...++++.+.+......+++.+..+|.+.|++++|...++.+.+.  .|+...+..+...+.+.
T Consensus       218 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~  295 (389)
T PRK11788        218 ILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQ  295 (389)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHh
Confidence            8888999999999999999999987654434567889999999999999999999999887  46666778899999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh---cCchhHHHHHHHhhC
Q 045498          159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV---KNETDRASSFLKKNM  207 (207)
Q Consensus       159 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~  207 (207)
                      |++++|..+++++.+.  .|+..++..++..+..   .|+.+++..++++|+
T Consensus       296 g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~  345 (389)
T PRK11788        296 EGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV  345 (389)
T ss_pred             CCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence            9999999999998876  6898899988887765   558899999888763

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.69  E-value=1.8e-14  Score=119.10  Aligned_cols=192  Identities=13%  Similarity=-0.017  Sum_probs=136.2

Q ss_pred             chhhhHHHHHhhhhhhhHHHHH-----HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhH
Q 045498           11 NFHVYGIRINGMCKIREIDSAI-----KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN   85 (207)
Q Consensus        11 ~~~~~~~ll~~~~~~g~~~~a~-----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~   85 (207)
                      +...+..+...+.+.|++++|.     .....|+..++..+..++.+.|++++|.+.++++.+.. +.+...+..+...+
T Consensus       702 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~  780 (899)
T TIGR02917       702 AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELY  780 (899)
T ss_pred             ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            3445555555666666666655     12233444555666666666677777776666666543 44566666677777


Q ss_pred             hhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 045498           86 WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD  165 (207)
Q Consensus        86 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~  165 (207)
                      ...|++++|...|+++.+.. +.+..+++.+...+.+.|+ .+|...+++..+.... +...+..+...+.+.|++++|.
T Consensus       781 ~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~  857 (899)
T TIGR02917       781 LAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRAL  857 (899)
T ss_pred             HHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHH
Confidence            77777777777777776664 3466677777777777777 6677777777665332 4556677788888999999999


Q ss_pred             HHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhhC
Q 045498          166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM  207 (207)
Q Consensus       166 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~  207 (207)
                      ..|+++.+.+.. +..++..+..++.+.|++++|.+++++|+
T Consensus       858 ~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  898 (899)
T TIGR02917       858 PLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLL  898 (899)
T ss_pred             HHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            999999987643 88899999999999999999999999885

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.67  E-value=7.5e-14  Score=115.47  Aligned_cols=191  Identities=12%  Similarity=0.057  Sum_probs=102.9

Q ss_pred             chhhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhh
Q 045498           11 NFHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD   84 (207)
Q Consensus        11 ~~~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~   84 (207)
                      +..+|..+...+.+.|++++|.      ....+.++..+..+..++.+.|++++|...|+++.+.. +.+..++..+...
T Consensus       600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~  678 (899)
T TIGR02917       600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQL  678 (899)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            3445555555555555555555      11112234445555555555555555555555555432 3334455555555


Q ss_pred             HhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 045498           85 NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA  164 (207)
Q Consensus        85 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a  164 (207)
                      +...|++++|..+++.+.+.. +.+...+..+...+.+.|++++|.+.++.+...+  |+..++..+..++.+.|++++|
T Consensus       679 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A  755 (899)
T TIGR02917       679 LLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEA  755 (899)
T ss_pred             HHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHH
Confidence            555555555555555555443 2344455555556666666666666666655543  3334555555666666666666


Q ss_pred             HHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          165 DKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       165 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      ...++.+.+.. +.+..++..+...|...|++++|.++|+++
T Consensus       756 ~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  796 (899)
T TIGR02917       756 VKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTV  796 (899)
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            66666655542 334555666666666666666666666554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13041 PPR_2: PPR repeat family

Probab=99.65  E-value=5.1e-16  Score=82.23  Aligned_cols=50  Identities=38%  Similarity=0.674  Sum_probs=39.7

Q ss_pred             ccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhh
Q 045498           38 LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE   87 (207)
Q Consensus        38 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~   87 (207)
                      ||+.+||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            67778888888888888888888888888888888888888888877764

>PF13041 PPR_2: PPR repeat family

Probab=99.64  E-value=1.1e-15  Score=81.00  Aligned_cols=49  Identities=51%  Similarity=0.835  Sum_probs=29.9

Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 045498          143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL  191 (207)
Q Consensus       143 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~  191 (207)
                      ||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~   49 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC   49 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence            4556666666666666666666666666666666666666666666554

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.59  E-value=6.5e-12  Score=88.07  Aligned_cols=193  Identities=12%  Similarity=-0.006  Sum_probs=156.4

Q ss_pred             chhhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhh
Q 045498           11 NFHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD   84 (207)
Q Consensus        11 ~~~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~   84 (207)
                      ....+..+...+...|++++|.      -...+.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~  108 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence            3466778888899999999988      12223456778888899999999999999999998765 4456678888889


Q ss_pred             HhhhcChhhHHHHHHHHHhCCC-CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 045498           85 NWEKQGRFSAMALLQTLERDKY-ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME  163 (207)
Q Consensus        85 ~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~  163 (207)
                      +...|++++|...+++...... ......+..+..++...|++++|.+.+++..+.... +...+..+...+...|++++
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~  187 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD  187 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence            9999999999999999876532 223456777888899999999999999998886433 56678888999999999999


Q ss_pred             HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          164 ADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       164 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      |...+++..+. .+.+...+..+...+...|+.++|..+.+.+
T Consensus       188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  229 (234)
T TIGR02521       188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL  229 (234)
T ss_pred             HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            99999998876 3456677778888899999999999887654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.57  E-value=8.9e-13  Score=96.56  Aligned_cols=194  Identities=19%  Similarity=0.234  Sum_probs=110.6

Q ss_pred             ccchhhhHHHHHhhhhhhhHHHHH-------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHH
Q 045498            9 KGNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPL   81 (207)
Q Consensus         9 ~p~~~~~~~ll~~~~~~g~~~~a~-------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l   81 (207)
                      +-+..+|.++|.++|+-...+.|.       ....+.+..+||.+|.+-.    +....+++.+|.....+||..|||++
T Consensus       204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNal  279 (625)
T KOG4422|consen  204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNAL  279 (625)
T ss_pred             CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHH
Confidence            445678888888888877777666       3334445555555554432    22224555555555555555555555


Q ss_pred             HhhHhhhcChhh----HHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCH-------------------------------
Q 045498           82 IHDNWEKQGRFS----AMALLQTLERDKYELNIEVYSLVIDGLCRVGRW-------------------------------  126 (207)
Q Consensus        82 l~~~~~~~~~~~----a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~-------------------------------  126 (207)
                      +++..+.|+++.    |.+++.+|++.|+.|...+|..+|.-+++.++.                               
T Consensus       280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF  359 (625)
T KOG4422|consen  280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF  359 (625)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence            555555555443    444555555555555555555555555555554                               


Q ss_pred             -------------HHHHHHHHHHHhCC----CCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 045498          127 -------------EEARKKLDQLSEKG----LVPG---VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV  186 (207)
Q Consensus       127 -------------~~a~~~~~~~~~~g----~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l  186 (207)
                                   +.|.++...+....    +.|+   ..-|..+....|+....+.....|+.|.-.-.-|+..+...+
T Consensus       360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~  439 (625)
T KOG4422|consen  360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL  439 (625)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence                         44443333332210    1111   112344455555666666666666666666566777777778


Q ss_pred             HHHHHhcCchhHHHHHHHhh
Q 045498          187 IQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       187 ~~~~~~~~~~~~a~~~~~~m  206 (207)
                      +++....|.++-..++|.++
T Consensus       440 lrA~~v~~~~e~ipRiw~D~  459 (625)
T KOG4422|consen  440 LRALDVANRLEVIPRIWKDS  459 (625)
T ss_pred             HHHHhhcCcchhHHHHHHHH
Confidence            88877788877777777765

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.56  E-value=7.5e-13  Score=96.94  Aligned_cols=168  Identities=19%  Similarity=0.283  Sum_probs=136.8

Q ss_pred             HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHH
Q 045498           33 KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV  112 (207)
Q Consensus        33 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~  112 (207)
                      ..-.+.+..+|.+||.+.++-...+.|.+++++-.....+.+..+||.+|.+-.-...    .+++.+|....+.||..|
T Consensus       200 ~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~T  275 (625)
T KOG4422|consen  200 FETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFT  275 (625)
T ss_pred             HhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHh
Confidence            4445667889999999999999999999999999988889999999999976554333    788999999999999999


Q ss_pred             HHHHHHHHhcCCCHHH----HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHHc----CCCC----C
Q 045498          113 YSLVIDGLCRVGRWEE----ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME-ADKLLVQMKEK----GCFP----D  179 (207)
Q Consensus       113 ~~~li~~~~~~~~~~~----a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~----~~~p----~  179 (207)
                      ||+++.+..+.|+++.    |.+++.+|++.|+.|...+|..+|..+++.+++.+ +..++.+++..    .++|    +
T Consensus       276 fNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d  355 (625)
T KOG4422|consen  276 FNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTD  355 (625)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCch
Confidence            9999999999998776    46688899999999999999999999999998854 55555555532    2333    3


Q ss_pred             hhhHHHHHHHHHhcCchhHHHHHHH
Q 045498          180 STSFNTVIQGFLVKNETDRASSFLK  204 (207)
Q Consensus       180 ~~~~~~l~~~~~~~~~~~~a~~~~~  204 (207)
                      ..-|..-+..|.+..+.+-|.++..
T Consensus       356 ~~FF~~AM~Ic~~l~d~~LA~~v~~  380 (625)
T KOG4422|consen  356 NKFFQSAMSICSSLRDLELAYQVHG  380 (625)
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            3446667777888888887777643

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.50  E-value=2.8e-11  Score=97.16  Aligned_cols=93  Identities=19%  Similarity=0.151  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-hHHHHHH
Q 045498          110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST-SFNTVIQ  188 (207)
Q Consensus       110 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~  188 (207)
                      ...+..+...+.+.|++++|...+++..+.... +...+..+..++.+.|++++|...|+.+.+.  .|+.. .+..+..
T Consensus       284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~  360 (656)
T PRK15174        284 VRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAA  360 (656)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHH
Confidence            334444444444445555555555444443221 2333444444455555555555555544443  22221 1222333


Q ss_pred             HHHhcCchhHHHHHHHh
Q 045498          189 GFLVKNETDRASSFLKK  205 (207)
Q Consensus       189 ~~~~~~~~~~a~~~~~~  205 (207)
                      ++...|+.++|...+++
T Consensus       361 al~~~G~~deA~~~l~~  377 (656)
T PRK15174        361 ALLQAGKTSEAESVFEH  377 (656)
T ss_pred             HHHHCCCHHHHHHHHHH
Confidence            44455555555555443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.49  E-value=4e-11  Score=84.04  Aligned_cols=167  Identities=17%  Similarity=0.119  Sum_probs=140.1

Q ss_pred             CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHH
Q 045498           37 CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV  116 (207)
Q Consensus        37 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  116 (207)
                      ......+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+
T Consensus        28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~  105 (234)
T TIGR02521        28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNY  105 (234)
T ss_pred             CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence            4446778889999999999999999999998764 4456788888899999999999999999988775 3356778888


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCc
Q 045498          117 IDGLCRVGRWEEARKKLDQLSEKGLV-PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE  195 (207)
Q Consensus       117 i~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~  195 (207)
                      ...+...|++++|.+.++...+.... .....+..+...+...|++++|...+.+..+.. +.+...+..+...+...|+
T Consensus       106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~  184 (234)
T TIGR02521       106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQ  184 (234)
T ss_pred             HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCC
Confidence            89999999999999999999875322 234567778889999999999999999988763 3356788889999999999


Q ss_pred             hhHHHHHHHhh
Q 045498          196 TDRASSFLKKN  206 (207)
Q Consensus       196 ~~~a~~~~~~m  206 (207)
                      +++|.+++++.
T Consensus       185 ~~~A~~~~~~~  195 (234)
T TIGR02521       185 YKDARAYLERY  195 (234)
T ss_pred             HHHHHHHHHHH
Confidence            99999998874

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.48  E-value=1.7e-12  Score=94.13  Aligned_cols=191  Identities=15%  Similarity=0.034  Sum_probs=107.9

Q ss_pred             hhhhHHHHHhhhhhhhHHHHH---HcC--CCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCcchhhHHHHHhhH
Q 045498           12 FHVYGIRINGMCKIREIDSAI---KKG--ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG-ITAELVTYNPLIHDN   85 (207)
Q Consensus        12 ~~~~~~ll~~~~~~g~~~~a~---~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~   85 (207)
                      +..+..++.. ...+++++|.   ..+  ..+++..+..++..+.+.++++++..+++.+.... .+.+...|..+...+
T Consensus        78 ~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~  156 (280)
T PF13429_consen   78 PQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIY  156 (280)
T ss_dssp             -----------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHH
T ss_pred             cccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence            3445555555 5777777777   222  24566777888888889999999999999876532 345677788888888


Q ss_pred             hhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 045498           86 WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD  165 (207)
Q Consensus        86 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~  165 (207)
                      .+.|+.++|.+.+++..+... -+......++..+...|+.+++.++++...+.. ..|...+..+..++...|++++|.
T Consensus       157 ~~~G~~~~A~~~~~~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al  234 (280)
T PF13429_consen  157 EQLGDPDKALRDYRKALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEAL  234 (280)
T ss_dssp             HHCCHHHHHHHHHHHHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccc
Confidence            999999999999999887742 257778888889999999999888888877664 335667788899999999999999


Q ss_pred             HHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       166 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      ..|+...+.. +.|+.+...+..++...|+.++|.++.++.
T Consensus       235 ~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~  274 (280)
T PF13429_consen  235 EYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA  274 (280)
T ss_dssp             HHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred             cccccccccc-cccccccccccccccccccccccccccccc
Confidence            9999988752 447888888999999999999999887764

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.47  E-value=6.1e-11  Score=95.25  Aligned_cols=154  Identities=12%  Similarity=-0.052  Sum_probs=88.2

Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHH-
Q 045498           50 LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE-  128 (207)
Q Consensus        50 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~-  128 (207)
                      +...|++++|...++.+.+....++...+..+..++...|++++|...+++..+.. +.+...+..+...+...|++++ 
T Consensus       187 l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA  265 (656)
T PRK15174        187 FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREA  265 (656)
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhh
Confidence            44555555555555555443222222333334445555666666666666655543 2244555556666666666664 


Q ss_pred             ---HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498          129 ---ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK  205 (207)
Q Consensus       129 ---a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  205 (207)
                         |...+++..+.... +...+..+...+.+.|++++|...+++..+.. +.+...+..+..++.+.|++++|...+++
T Consensus       266 ~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~  343 (656)
T PRK15174        266 KLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQ  343 (656)
T ss_pred             HHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence               56666666655322 45566666677777777777777777766542 22345566666677777777777776665


Q ss_pred             h
Q 045498          206 N  206 (207)
Q Consensus       206 m  206 (207)
                      +
T Consensus       344 a  344 (656)
T PRK15174        344 L  344 (656)
T ss_pred             H
Confidence            4

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.46  E-value=8.9e-11  Score=94.05  Aligned_cols=164  Identities=15%  Similarity=0.087  Sum_probs=83.6

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHH
Q 045498           40 VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG  119 (207)
Q Consensus        40 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  119 (207)
                      ..+|..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++..+.. +.+...++.+...
T Consensus       399 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~  476 (615)
T TIGR00990       399 PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGEL  476 (615)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence            3444444445555555555555555554432 2233344444445555555555555555544432 2234455555555


Q ss_pred             HhcCCCHHHHHHHHHHHHhCCCCCChh------hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 045498          120 LCRVGRWEEARKKLDQLSEKGLVPGVV------TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK  193 (207)
Q Consensus       120 ~~~~~~~~~a~~~~~~~~~~g~~~~~~------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~  193 (207)
                      +...|++++|.+.|++........+..      .++.....+...|++++|..++++..+.. +.+..++..+...+.+.
T Consensus       477 ~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~  555 (615)
T TIGR00990       477 LLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQ  555 (615)
T ss_pred             HHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHc
Confidence            566666666666666555442211110      11111222233466666666666655542 22334566777777778


Q ss_pred             CchhHHHHHHHhh
Q 045498          194 NETDRASSFLKKN  206 (207)
Q Consensus       194 ~~~~~a~~~~~~m  206 (207)
                      |++++|.++|++.
T Consensus       556 g~~~eAi~~~e~A  568 (615)
T TIGR00990       556 GDVDEALKLFERA  568 (615)
T ss_pred             cCHHHHHHHHHHH
Confidence            8888887777654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.44  E-value=1.7e-10  Score=95.58  Aligned_cols=192  Identities=9%  Similarity=-0.078  Sum_probs=139.3

Q ss_pred             cchhhhHHHHHhhhhhhhHHHHH-----HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhh
Q 045498           10 GNFHVYGIRINGMCKIREIDSAI-----KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD   84 (207)
Q Consensus        10 p~~~~~~~ll~~~~~~g~~~~a~-----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~   84 (207)
                      |+......+...+...|++++|.     ....+|+...+..+..++.+.|++++|...+++..+.. +.+...+..+...
T Consensus       507 Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~  585 (987)
T PRK09782        507 PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQ  585 (987)
T ss_pred             CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHH
Confidence            55443333344445778888877     12224444556666777788888888888888887764 2232333333334


Q ss_pred             HhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 045498           85 NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA  164 (207)
Q Consensus        85 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a  164 (207)
                      ....|++++|...+++..+..  |+...+..+..++.+.|++++|...+++.....+. +...++.+...+...|++++|
T Consensus       586 l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeA  662 (987)
T PRK09782        586 RYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQS  662 (987)
T ss_pred             HHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence            445588999999998887764  46778888888899999999999999998887543 566777888888899999999


Q ss_pred             HHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          165 DKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       165 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      ...++...+.. +-+...+..+..++...|++++|...+++.
T Consensus       663 i~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~A  703 (987)
T PRK09782        663 REMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLV  703 (987)
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            99999888762 336678888889999999999999988865

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.43  E-value=2.1e-10  Score=91.94  Aligned_cols=191  Identities=14%  Similarity=-0.046  Sum_probs=142.3

Q ss_pred             hhhHHHHHhhhhhhhHHHHH-----HcCCCcc-HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHh
Q 045498           13 HVYGIRINGMCKIREIDSAI-----KKGICLD-VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNW   86 (207)
Q Consensus        13 ~~~~~ll~~~~~~g~~~~a~-----~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~   86 (207)
                      ..|+.+...+...|++++|+     .....|+ ...|..+...+...|++++|+..|++..+.. +.+..+|..+...+.
T Consensus       332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~  410 (615)
T TIGR00990       332 IALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHF  410 (615)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            45677777777888998888     2223443 5577888888888999999999999887764 445678888888889


Q ss_pred             hhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 045498           87 EKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK  166 (207)
Q Consensus        87 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~  166 (207)
                      ..|++++|...|++..+.. +.+...+..+...+.+.|++++|...++...+... -+...++.+...+...|++++|..
T Consensus       411 ~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~  488 (615)
T TIGR00990       411 IKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP-EAPDVYNYYGELLLDQNKFDEAIE  488 (615)
T ss_pred             HcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHH
Confidence            9999999999999888765 33567777888888899999999999998887632 256788888889999999999999


Q ss_pred             HHHHHHHcCCCCChh------hHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          167 LLVQMKEKGCFPDST------SFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       167 ~~~~m~~~~~~p~~~------~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      .|+...+..-..+..      .+......+...|++++|.+++++.
T Consensus       489 ~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kA  534 (615)
T TIGR00990       489 KFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKA  534 (615)
T ss_pred             HHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            999887653211111      1122222334468899999888764

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.38  E-value=7.8e-12  Score=90.66  Aligned_cols=186  Identities=16%  Similarity=0.088  Sum_probs=95.9

Q ss_pred             HHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhc
Q 045498           16 GIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ   89 (207)
Q Consensus        16 ~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~   89 (207)
                      ..+.......++++.|.      -...+-++..+..++.. ...+++++|.+++.+..+.  .+++..+..++..+...+
T Consensus        48 ~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~  124 (280)
T PF13429_consen   48 RLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLG  124 (280)
T ss_dssp             -------------------------------------------------------------------------H-HHHTT
T ss_pred             cccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHh
Confidence            33444455567777777      11111245566667766 6888888888888776554  356667788888889999


Q ss_pred             ChhhHHHHHHHHHhCC-CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 045498           90 GRFSAMALLQTLERDK-YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL  168 (207)
Q Consensus        90 ~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~  168 (207)
                      +++++..+++...+.. .+.+...|..+...+.+.|+.++|.+.+++..+..+. |......++..+...|+.+++..++
T Consensus       125 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l  203 (280)
T PF13429_consen  125 DYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREAL  203 (280)
T ss_dssp             -HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHH
Confidence            9999999999876543 3456778888888999999999999999999887433 5778888999999999999999999


Q ss_pred             HHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          169 VQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       169 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      +...+.. +.|+..+..+..++...|+.++|..++++.
T Consensus       204 ~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~  240 (280)
T PF13429_consen  204 KRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKA  240 (280)
T ss_dssp             HHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred             HHHHHHC-cCHHHHHHHHHHHhcccccccccccccccc
Confidence            8888764 556677888999999999999999998864

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.34  E-value=2.5e-09  Score=81.30  Aligned_cols=181  Identities=10%  Similarity=0.028  Sum_probs=113.1

Q ss_pred             HHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-------------------
Q 045498           19 INGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITA-------------------   73 (207)
Q Consensus        19 l~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-------------------   73 (207)
                      ...+...|+++.|.      ....+-++.....+...|.+.|+|++|..++..+.+.+..+                   
T Consensus       160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~  239 (398)
T PRK10747        160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA  239 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            34555666666666      22223345666667777777777777777666666543321                   


Q ss_pred             ----------------------chhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHH
Q 045498           74 ----------------------ELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK  131 (207)
Q Consensus        74 ----------------------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  131 (207)
                                            ++.....+...+...|+.++|..++++..+.  +|+...  .++.+....++.+++.+
T Consensus       240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~  315 (398)
T PRK10747        240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEK  315 (398)
T ss_pred             HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHH
Confidence                                  1112222334445555666666666555543  223211  12223334466666666


Q ss_pred             HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       132 ~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      ..+...+.... |......+...+.+.+++++|.+.|+...+.  .|+..++..+...+.+.|+.++|.+++++-
T Consensus       316 ~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~  387 (398)
T PRK10747        316 VLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG  387 (398)
T ss_pred             HHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            66666655322 4555677788888899999999999988875  688888888999999999999998888763

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.34  E-value=6.3e-10  Score=79.03  Aligned_cols=192  Identities=16%  Similarity=0.078  Sum_probs=151.8

Q ss_pred             hhHHHHHhhhhhhhHHHHH----HcCCCccH------HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHh
Q 045498           14 VYGIRINGMCKIREIDSAI----KKGICLDV------FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH   83 (207)
Q Consensus        14 ~~~~ll~~~~~~g~~~~a~----~~~~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~   83 (207)
                      +.-+|-+.|-+.|.+|.|+    ..--.||.      ...-.|-.-|...|-++.|+.+|..+.+.+ ..-......|+.
T Consensus        71 ~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~  149 (389)
T COG2956          71 AHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLN  149 (389)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHH
Confidence            4456777888899999999    11223332      334445666888899999999999998865 345568899999


Q ss_pred             hHhhhcChhhHHHHHHHHHhCCCCccH----HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 045498           84 DNWEKQGRFSAMALLQTLERDKYELNI----EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG  159 (207)
Q Consensus        84 ~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~  159 (207)
                      .|....+|++|.++-+++.+.+-.+..    ..|..+...+....+.+.|...+++..+...+ .+..-..+-+.+...|
T Consensus       150 IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g  228 (389)
T COG2956         150 IYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKG  228 (389)
T ss_pred             HHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhcc
Confidence            999999999999999999887755432    35666777777788899999999998887543 4445556668899999


Q ss_pred             CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhhC
Q 045498          160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM  207 (207)
Q Consensus       160 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~  207 (207)
                      ++++|.+.++...+++...-+.+...|..+|...|+.++...++.++|
T Consensus       229 ~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~  276 (389)
T COG2956         229 DYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAM  276 (389)
T ss_pred             chHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            999999999999998776677889999999999999999999988764

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.33  E-value=1.4e-09  Score=90.23  Aligned_cols=189  Identities=10%  Similarity=-0.017  Sum_probs=145.4

Q ss_pred             chhhhHHHHHhhhhhhhHHHHH-----HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhH
Q 045498           11 NFHVYGIRINGMCKIREIDSAI-----KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN   85 (207)
Q Consensus        11 ~~~~~~~ll~~~~~~g~~~~a~-----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~   85 (207)
                      +...|..+..++.. ++.++|+     .....|+......+...+.+.|++++|...|+++...  +|+...+..+..++
T Consensus       476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~al  552 (987)
T PRK09782        476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTA  552 (987)
T ss_pred             CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHH
Confidence            45566666666665 7777777     2333455544434455556899999999999998654  45555566777788


Q ss_pred             hhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 045498           86 WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD  165 (207)
Q Consensus        86 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~  165 (207)
                      ...|+.++|...+++..+.. +.+...+..+.....+.|++++|...+++..+.  .|+...+..+..++.+.|++++|.
T Consensus       553 l~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~  629 (987)
T PRK09782        553 QAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAV  629 (987)
T ss_pred             HHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            99999999999999998775 223344444445556779999999999999987  467888999999999999999999


Q ss_pred             HHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       166 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      ..+++..+.. +.+...+..+..++...|++++|.+.+++.
T Consensus       630 ~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~A  669 (987)
T PRK09782        630 SDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERA  669 (987)
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            9999998873 336677888888999999999999998865

>PRK12370 invasion protein regulator; Provisional

Probab=99.31  E-value=3.8e-09  Score=83.61  Aligned_cols=150  Identities=12%  Similarity=-0.023  Sum_probs=92.5

Q ss_pred             CChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHH
Q 045498           54 NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKL  133 (207)
Q Consensus        54 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  133 (207)
                      +++++|...+++..+.+ +-+...+..+-..+...|++++|...+++..+.+ +.+...+..+...+...|++++|...+
T Consensus       318 ~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~  395 (553)
T PRK12370        318 NAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTI  395 (553)
T ss_pred             hHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            34667777777776654 3455566666666667777777777777776654 224556666666777777777777777


Q ss_pred             HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          134 DQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       134 ~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      ++..+.... +...+..++..+...|++++|...+++..+...+-++..+..+..++...|+.++|.+.++++
T Consensus       396 ~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~  467 (553)
T PRK12370        396 NECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEI  467 (553)
T ss_pred             HHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence            777766432 222233334445556777777777777665422223344555666667777777777776653

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.29  E-value=4.1e-11  Score=94.73  Aligned_cols=188  Identities=17%  Similarity=0.120  Sum_probs=135.6

Q ss_pred             ccccccccchhhhHHHHHhhhhhhhHHHHH------------------------------HcCCCccHHhHHHHHHHHHh
Q 045498            3 LTEQRFKGNFHVYGIRINGMCKIREIDSAI------------------------------KKGICLDVFVYSSLINGLCT   52 (207)
Q Consensus         3 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~------------------------------~~~~~~~~~~~~~ll~~~~~   52 (207)
                      +...|+.|+..||..+|.-||..|+++.|-                              ++.-.|.+.+|+.|+.+|.+
T Consensus        16 ~e~~gi~PnRvtyqsLiarYc~~gdieaatif~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~   95 (1088)
T KOG4318|consen   16 HEISGILPNRVTYQSLIARYCTKGDIEAATIFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRI   95 (1088)
T ss_pred             HHHhcCCCchhhHHHHHHHHcccCCCccccchhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHh
Confidence            457899999999999999999999987654                              23346788999999999999


Q ss_pred             cCChhH---HHHHHHHHHh----CCC-----------------CcchhhHHHHHhhHhhhcChhhHHHHH----------
Q 045498           53 FNRLKE---AVELFDKMVA----QGI-----------------TAELVTYNPLIHDNWEKQGRFSAMALL----------   98 (207)
Q Consensus        53 ~~~~~~---a~~~~~~m~~----~~~-----------------~~~~~~~~~ll~~~~~~~~~~~a~~~~----------   98 (207)
                      +|+...   +.+.+.....    .|+                 -||..+   .+......|-++.+++++          
T Consensus        96 hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaqllkll~~~Pvsa~~~  172 (1088)
T KOG4318|consen   96 HGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQLLKLLAKVPVSAWNA  172 (1088)
T ss_pred             ccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHHHHHHHhhCCcccccc
Confidence            998655   3332222221    121                 111111   111112222222222222          


Q ss_pred             ------HHH-------------HhCCC-CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 045498           99 ------QTL-------------ERDKY-ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK  158 (207)
Q Consensus        99 ------~~m-------------~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~  158 (207)
                            +++             .+... .|+..+|..++.+-...|+.+.|..++.+|.+.|++.+.+-|-.|+-+   .
T Consensus       173 p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~  249 (1088)
T KOG4318|consen  173 PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---I  249 (1088)
T ss_pred             hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---C
Confidence                  111             11112 488999999999999999999999999999999999998888888876   8


Q ss_pred             CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCch
Q 045498          159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNET  196 (207)
Q Consensus       159 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~  196 (207)
                      ++...+..++.-|++.|+.|+..|+..-+-.+.++|..
T Consensus       250 ~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t  287 (1088)
T KOG4318|consen  250 NAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQT  287 (1088)
T ss_pred             ccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhh
Confidence            88899999999999999999999999888887775543

>PRK12370 invasion protein regulator; Provisional

Probab=99.29  E-value=4.9e-09  Score=83.01  Aligned_cols=174  Identities=10%  Similarity=-0.058  Sum_probs=128.4

Q ss_pred             hhHHHHH-----HcCCCc-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHH
Q 045498           26 REIDSAI-----KKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ   99 (207)
Q Consensus        26 g~~~~a~-----~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~   99 (207)
                      +++++|.     .....| +...+..+-..+...|++++|...|++..+.+ +.+...+..+-.++...|++++|...++
T Consensus       318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~  396 (553)
T PRK12370        318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTIN  396 (553)
T ss_pred             hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            3466666     222333 56778888888899999999999999999875 4556778888889999999999999999


Q ss_pred             HHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 045498          100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD  179 (207)
Q Consensus       100 ~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~  179 (207)
                      +..+.... +...+..+...+...|++++|...+++..+...+-+...+..+..++...|++++|...+.++...  .|+
T Consensus       397 ~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~  473 (553)
T PRK12370        397 ECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EIT  473 (553)
T ss_pred             HHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cch
Confidence            99887543 333334445556678999999999999876532224555777888889999999999999987665  343


Q ss_pred             -hhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498          180 -STSFNTVIQGFLVKNETDRASSFLKK  205 (207)
Q Consensus       180 -~~~~~~l~~~~~~~~~~~~a~~~~~~  205 (207)
                       ....+.+...|...|  ++|...+++
T Consensus       474 ~~~~~~~l~~~~~~~g--~~a~~~l~~  498 (553)
T PRK12370        474 GLIAVNLLYAEYCQNS--ERALPTIRE  498 (553)
T ss_pred             hHHHHHHHHHHHhccH--HHHHHHHHH
Confidence             344455555667766  466666654

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.26  E-value=3.9e-09  Score=90.18  Aligned_cols=130  Identities=13%  Similarity=0.014  Sum_probs=84.9

Q ss_pred             hhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 045498           75 LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING  154 (207)
Q Consensus        75 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~  154 (207)
                      ...+..+-..+.+.|+.++|...|++..+.. +.+...+..+...+...|++++|.+.++...+... .+......+..+
T Consensus       603 ~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p-~~~~~~~~la~~  680 (1157)
T PRK11447        603 TRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN-DSLNTQRRVALA  680 (1157)
T ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC-CChHHHHHHHHH
Confidence            3344455556666777777777777776654 23566777777777777777777777777665422 134455666677


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCC--CC---ChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          155 LCKKGMIMEADKLLVQMKEKGC--FP---DSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       155 ~~~~~~~~~a~~~~~~m~~~~~--~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      +.+.|++++|.++++.+.....  .|   +...+..+...+...|+.++|.+.|++.
T Consensus       681 ~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A  737 (1157)
T PRK11447        681 WAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA  737 (1157)
T ss_pred             HHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            7777888888888877765421  11   2234555566777778888888777765

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.25  E-value=8.4e-10  Score=84.82  Aligned_cols=157  Identities=13%  Similarity=0.046  Sum_probs=69.1

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhc
Q 045498           43 YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR  122 (207)
Q Consensus        43 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  122 (207)
                      +..+...|...|+.+-|+..|++..+.. +-=+..|+.|-.++...|++.+|.+.|.+..... +-.....+.+...+..
T Consensus       289 ~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E  366 (966)
T KOG4626|consen  289 HGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYRE  366 (966)
T ss_pred             ccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH
Confidence            3344444444444444444444444331 1112344444444444444444444444444332 1123344444444444


Q ss_pred             CCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCchhHHH
Q 045498          123 VGRWEEARKKLDQLSEKGLVPG-VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS-TSFNTVIQGFLVKNETDRAS  200 (207)
Q Consensus       123 ~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~  200 (207)
                      .|.+++|..+|....+.  .|. ...++.|...|-+.|++++|...|++...  +.|+- .+|+.+-..|-..|+.+.|.
T Consensus       367 ~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~  442 (966)
T KOG4626|consen  367 QGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAI  442 (966)
T ss_pred             hccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHH
Confidence            44444444444444433  122 23344455555555555555555554443  23332 34445555555555555555


Q ss_pred             HHHHh
Q 045498          201 SFLKK  205 (207)
Q Consensus       201 ~~~~~  205 (207)
                      +.+.+
T Consensus       443 q~y~r  447 (966)
T KOG4626|consen  443 QCYTR  447 (966)
T ss_pred             HHHHH
Confidence            54443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.24  E-value=5.3e-09  Score=89.37  Aligned_cols=189  Identities=13%  Similarity=0.061  Sum_probs=130.9

Q ss_pred             hHHHHHhhhhhhhHHHHH-----HcCCCc-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhh
Q 045498           15 YGIRINGMCKIREIDSAI-----KKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK   88 (207)
Q Consensus        15 ~~~ll~~~~~~g~~~~a~-----~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~   88 (207)
                      +..+...+...|++++|+     .....| ++..+..+...+.+.|++++|...++++.+.. +.+...+..+...+...
T Consensus       464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~  542 (1157)
T PRK11447        464 LAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGS  542 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhC
Confidence            344556677788888888     222233 56677888888999999999999999987653 22333332222233334


Q ss_pred             cChhhHHHHHHHHHhC---------------------------------------CCCccHHHHHHHHHHHhcCCCHHHH
Q 045498           89 QGRFSAMALLQTLERD---------------------------------------KYELNIEVYSLVIDGLCRVGRWEEA  129 (207)
Q Consensus        89 ~~~~~a~~~~~~m~~~---------------------------------------~~~~~~~~~~~li~~~~~~~~~~~a  129 (207)
                      ++.++|...++.+...                                       ..+.+...+..+...+.+.|++++|
T Consensus       543 ~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A  622 (1157)
T PRK11447        543 DRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAA  622 (1157)
T ss_pred             CCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHH
Confidence            4444444443332110                                       1233455667788888899999999


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       130 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      .+.|+...+.... +...+..+...+...|++++|...++...+.. +.+..+...+..++...|++++|.++++++
T Consensus       623 ~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~a  697 (1157)
T PRK11447        623 RAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRL  697 (1157)
T ss_pred             HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            9999998887543 67888889999999999999999999877642 234566777888888999999999998875

>TIGR00540 hemY_coli hemY protein

Probab=99.23  E-value=2.9e-08  Score=75.89  Aligned_cols=60  Identities=15%  Similarity=0.133  Sum_probs=46.2

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       147 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      ...++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus       337 ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~  396 (409)
T TIGR00540       337 INRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS  396 (409)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            445677778888888888888885444444688888888888888888888888888763

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.23  E-value=1.3e-09  Score=83.83  Aligned_cols=188  Identities=14%  Similarity=0.011  Sum_probs=146.1

Q ss_pred             hhhHHHHHhhhhhhhHHHHH-----HcCCCcc-HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHh
Q 045498           13 HVYGIRINGMCKIREIDSAI-----KKGICLD-VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNW   86 (207)
Q Consensus        13 ~~~~~ll~~~~~~g~~~~a~-----~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~   86 (207)
                      ..|..+...|-..|.+|-|+     .....|+ +..|+.|..++-..|++.+|.+.|.+..... +......+.|-+++.
T Consensus       287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~  365 (966)
T KOG4626|consen  287 VAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYR  365 (966)
T ss_pred             hhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence            35555556666677777777     3344554 5789999999999999999999999988763 334567888889999


Q ss_pred             hhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHH
Q 045498           87 EKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG-VVTYNILINGLCKKGMIMEAD  165 (207)
Q Consensus        87 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~~~~~~a~  165 (207)
                      ..|.+++|.++|....+.... -...++.+...|-..|++++|...+++..+-  +|+ ...|+.+-..|-..|+.+.|.
T Consensus       366 E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~  442 (966)
T KOG4626|consen  366 EQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAI  442 (966)
T ss_pred             HhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHH
Confidence            999999999999887765322 3567888889999999999999999988875  555 567888888888888889998


Q ss_pred             HHHHHHHHcCCCCC-hhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          166 KLLVQMKEKGCFPD-STSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       166 ~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      ..+.+....  .|. ..+++.|...|-..|++.+|.+-+++.
T Consensus       443 q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~a  482 (966)
T KOG4626|consen  443 QCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTA  482 (966)
T ss_pred             HHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHH
Confidence            888887765  343 467888888888899988888887764

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.21  E-value=2.1e-08  Score=76.31  Aligned_cols=181  Identities=10%  Similarity=-0.006  Sum_probs=133.2

Q ss_pred             HhhhhhhhHHHHH-----HcCCCccHHhHH--HHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChh
Q 045498           20 NGMCKIREIDSAI-----KKGICLDVFVYS--SLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF   92 (207)
Q Consensus        20 ~~~~~~g~~~~a~-----~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~   92 (207)
                      .+..+.|+++.|.     .....|+...+.  .....+...|+++.|...++++.+.. |-++.....+...+.+.|+++
T Consensus       126 ~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~  204 (398)
T PRK10747        126 EAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWS  204 (398)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHH
Confidence            3336788888887     344455554433  33567888999999999999998876 556788999999999999999


Q ss_pred             hHHHHHHHHHhCCCCc-----------------------------------------cHHHHHHHHHHHhcCCCHHHHHH
Q 045498           93 SAMALLQTLERDKYEL-----------------------------------------NIEVYSLVIDGLCRVGRWEEARK  131 (207)
Q Consensus        93 ~a~~~~~~m~~~~~~~-----------------------------------------~~~~~~~li~~~~~~~~~~~a~~  131 (207)
                      +|..++..+.+.+..+                                         +......+...+.+.|+.++|.+
T Consensus       205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~  284 (398)
T PRK10747        205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQ  284 (398)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            9998888887654321                                         22234455667778888888888


Q ss_pred             HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       132 ~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      ++++..+.  .|+..  -.++.+....++++++.+..+...+. .+-|...+..+.+.+.+.+++++|.+.|++.
T Consensus       285 ~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~-~P~~~~l~l~lgrl~~~~~~~~~A~~~le~a  354 (398)
T PRK10747        285 IILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQ-HGDTPLLWSTLGQLLMKHGEWQEASLAFRAA  354 (398)
T ss_pred             HHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            88888774  33432  22344445668888999988888876 2335566888999999999999999999875

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.20  E-value=1.5e-09  Score=83.48  Aligned_cols=191  Identities=16%  Similarity=0.061  Sum_probs=139.6

Q ss_pred             chhhhHHHHHhhhhhhhHHHHH---HcCCCcc---HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhh
Q 045498           11 NFHVYGIRINGMCKIREIDSAI---KKGICLD---VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD   84 (207)
Q Consensus        11 ~~~~~~~ll~~~~~~g~~~~a~---~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~   84 (207)
                      .+.+|.++-++|.-+++.+.|+   ++.+..|   ..+|+.+-+-+.....+|.|...|+...... +.+-..|--|-..
T Consensus       420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~v  498 (638)
T KOG1126|consen  420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGTV  498 (638)
T ss_pred             CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhhh
Confidence            3467888888888888888887   4454444   3556666666777778888888887776542 2233445556678


Q ss_pred             HhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 045498           85 NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA  164 (207)
Q Consensus        85 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a  164 (207)
                      |.+.++.+.|+-.|++..+.+.. +.+....+...+.+.|+.++|++++++......+ |+..--.-...+.-.+++++|
T Consensus       499 y~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~ea  576 (638)
T KOG1126|consen  499 YLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEA  576 (638)
T ss_pred             eeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHH
Confidence            88888888888888888877633 6666677777888888999999999988887665 555555556666778889999


Q ss_pred             HHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498          165 DKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK  205 (207)
Q Consensus       165 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  205 (207)
                      +..++++++. ++-+...|..+.+.|.+.|+.+.|+.-|.-
T Consensus       577 l~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~  616 (638)
T KOG1126|consen  577 LQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSW  616 (638)
T ss_pred             HHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHH
Confidence            9999998876 333456788888899999988888776543

>PF12854 PPR_1: PPR repeat

Probab=99.17  E-value=5.2e-11  Score=57.07  Aligned_cols=32  Identities=31%  Similarity=0.650  Sum_probs=21.4

Q ss_pred             CCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       175 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      |+.||..||++||.+|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            56666666666666666666666666666665

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.17  E-value=3.1e-08  Score=81.34  Aligned_cols=184  Identities=10%  Similarity=-0.048  Sum_probs=139.3

Q ss_pred             HhhhhhhhHHHHH-------HcCCC-ccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc---chhhHHHHHhhHhhh
Q 045498           20 NGMCKIREIDSAI-------KKGIC-LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITA---ELVTYNPLIHDNWEK   88 (207)
Q Consensus        20 ~~~~~~g~~~~a~-------~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~   88 (207)
                      .++...|++++|+       ..+.+ |+. .-..+...+...|++++|+..|+++.......   .......+..++...
T Consensus       245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~  323 (765)
T PRK10049        245 GALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES  323 (765)
T ss_pred             HHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence            3455668888888       22221 322 22225678899999999999999987653111   123456667788999


Q ss_pred             cChhhHHHHHHHHHhCCC-----------Ccc---HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 045498           89 QGRFSAMALLQTLERDKY-----------ELN---IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING  154 (207)
Q Consensus        89 ~~~~~a~~~~~~m~~~~~-----------~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~  154 (207)
                      +++++|...++.+.+...           .|+   ...+..+...+...|++++|.++++++...... +...+..+...
T Consensus       324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l  402 (765)
T PRK10049        324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASV  402 (765)
T ss_pred             ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence            999999999999887531           123   234566778889999999999999999887543 67888999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       155 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      +...|++++|++.+++..+.. +.+...+..+...+.+.|++++|..+++++
T Consensus       403 ~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~l  453 (765)
T PRK10049        403 LQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDV  453 (765)
T ss_pred             HHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            999999999999999998863 334677777888899999999999999875

>PF12854 PPR_1: PPR repeat

Probab=99.16  E-value=5.5e-11  Score=56.98  Aligned_cols=33  Identities=48%  Similarity=0.865  Sum_probs=23.9

Q ss_pred             cCCCccHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 045498           34 KGICLDVFVYSSLINGLCTFNRLKEAVELFDKM   66 (207)
Q Consensus        34 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m   66 (207)
                      +|+.||..+|++||++|++.|++++|.++|++|
T Consensus         1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            366777777777777777777777777777766

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.16  E-value=2.3e-08  Score=70.66  Aligned_cols=168  Identities=11%  Similarity=-0.043  Sum_probs=126.4

Q ss_pred             CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcch---hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccH--H
Q 045498           37 CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL---VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI--E  111 (207)
Q Consensus        37 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~  111 (207)
                      ......+-.+...+.+.|++++|...|+++.... +.+.   .++..+..++...|++++|...++++.+.......  .
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  108 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY  108 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence            5566778888889999999999999999998763 2222   46677788999999999999999999876432111  2


Q ss_pred             HHHHHHHHHhcC--------CCHHHHHHHHHHHHhCCCCCChhhH-----------------HHHHHHHHhcCCHHHHHH
Q 045498          112 VYSLVIDGLCRV--------GRWEEARKKLDQLSEKGLVPGVVTY-----------------NILINGLCKKGMIMEADK  166 (207)
Q Consensus       112 ~~~~li~~~~~~--------~~~~~a~~~~~~~~~~g~~~~~~~~-----------------~~li~~~~~~~~~~~a~~  166 (207)
                      ++..+..++.+.        |+++.|.+.++.+.+.... +...+                 ..+...+.+.|++++|..
T Consensus       109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~  187 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN  187 (235)
T ss_pred             HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            455555555544        7889999999999876432 22121                 134566788999999999


Q ss_pred             HHHHHHHcCC--CCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          167 LLVQMKEKGC--FPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       167 ~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      .++...+..-  +.....+..+..++.+.|++++|..+++.+
T Consensus       188 ~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l  229 (235)
T TIGR03302       188 RFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL  229 (235)
T ss_pred             HHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999987621  224578899999999999999999988764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=1.7e-08  Score=75.15  Aligned_cols=161  Identities=11%  Similarity=0.002  Sum_probs=138.0

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 045498           41 FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL  120 (207)
Q Consensus        41 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  120 (207)
                      .|+.++.+-|.-.++.++|...|++..+.+ +-....|+.+-+-|....+...|.+-++...+.. +.|-..|..+-.+|
T Consensus       331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaY  408 (559)
T KOG1155|consen  331 ETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAY  408 (559)
T ss_pred             cceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHH
Confidence            344444555666778899999999999876 4456789999999999999999999999998876 44888999999999


Q ss_pred             hcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHH
Q 045498          121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS  200 (207)
Q Consensus       121 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~  200 (207)
                      .-.+...-|+-.|++.....+. |...|.+|-.+|.+.+++++|.+.|.+....|-. +...+..|.+.+-+.++..+|.
T Consensus       409 eim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa  486 (559)
T KOG1155|consen  409 EIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAA  486 (559)
T ss_pred             HHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHH
Confidence            9999999999999999887544 7889999999999999999999999999887633 6688999999999999999999


Q ss_pred             HHHHh
Q 045498          201 SFLKK  205 (207)
Q Consensus       201 ~~~~~  205 (207)
                      +++++
T Consensus       487 ~~yek  491 (559)
T KOG1155|consen  487 QYYEK  491 (559)
T ss_pred             HHHHH
Confidence            98876

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.15  E-value=5e-09  Score=80.76  Aligned_cols=166  Identities=10%  Similarity=-0.073  Sum_probs=137.6

Q ss_pred             CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHH
Q 045498           37 CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV  116 (207)
Q Consensus        37 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  116 (207)
                      +-++.+|.++-++|.-.++.+.|++.|++....+ +-...+|+.+-.-+....++|.|...|+........ +-..|..+
T Consensus       418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYnAwYGl  495 (638)
T KOG1126|consen  418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYNAWYGL  495 (638)
T ss_pred             CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhHHHHhh
Confidence            4467899999999999999999999999998764 336788999989999999999999999987765322 34566677


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCch
Q 045498          117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNET  196 (207)
Q Consensus       117 i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~  196 (207)
                      ...|.|.++++.|+-.|+...+-++. +.+....+...+-+.|+.++|+.++++....... |+..-..-...+...+++
T Consensus       496 G~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~  573 (638)
T KOG1126|consen  496 GTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRY  573 (638)
T ss_pred             hhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcch
Confidence            78899999999999999999987654 6777788888899999999999999998876432 555555567778889999


Q ss_pred             hHHHHHHHhh
Q 045498          197 DRASSFLKKN  206 (207)
Q Consensus       197 ~~a~~~~~~m  206 (207)
                      ++|++.++++
T Consensus       574 ~eal~~LEeL  583 (638)
T KOG1126|consen  574 VEALQELEEL  583 (638)
T ss_pred             HHHHHHHHHH
Confidence            9999999875

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.11  E-value=8.5e-09  Score=73.74  Aligned_cols=160  Identities=9%  Similarity=-0.016  Sum_probs=106.1

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 045498           41 FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL  120 (207)
Q Consensus        41 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  120 (207)
                      .-=+-+-.+|.+.|.+.+|.+-|+.-.+.  .|-+.||-.|-++|.+..++..|+.++.+-... ++.++.....+.+.+
T Consensus       224 wWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~  300 (478)
T KOG1129|consen  224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIH  300 (478)
T ss_pred             HHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHH
Confidence            33355667777777777777777776665  345557777777777777777777777766554 233444444556666


Q ss_pred             hcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHH
Q 045498          121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS  200 (207)
Q Consensus       121 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~  200 (207)
                      -..++.++|.++++...+.... ++....++...|.-.++++-|..+|+++...|+. ++..|+.+.-+|.-.+++|-++
T Consensus       301 eam~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L  378 (478)
T KOG1129|consen  301 EAMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL  378 (478)
T ss_pred             HHHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence            6677777777777777665432 5666666666677777777777777777777654 6666777777777777777666


Q ss_pred             HHHHh
Q 045498          201 SFLKK  205 (207)
Q Consensus       201 ~~~~~  205 (207)
                      .-|++
T Consensus       379 ~sf~R  383 (478)
T KOG1129|consen  379 PSFQR  383 (478)
T ss_pred             HHHHH
Confidence            55554

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.11  E-value=1.8e-07  Score=68.40  Aligned_cols=167  Identities=13%  Similarity=0.095  Sum_probs=111.4

Q ss_pred             CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCC----------
Q 045498           37 CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKY----------  106 (207)
Q Consensus        37 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~----------  106 (207)
                      .++...+-+........|++..|..-+.++.+.+ +..+........+|.+.|++..+..++..+.+.+.          
T Consensus       150 ~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le  228 (400)
T COG3071         150 DDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLE  228 (400)
T ss_pred             CchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHH
Confidence            3344444444445555555555555555555543 33445555555566666666655555555555442          


Q ss_pred             -------------------------------CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC------------
Q 045498          107 -------------------------------ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP------------  143 (207)
Q Consensus       107 -------------------------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~------------  143 (207)
                                                     +-++..-.+++.-+.++|+.++|.++.++..+.+..|            
T Consensus       229 ~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~  308 (400)
T COG3071         229 QQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPG  308 (400)
T ss_pred             HHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCC
Confidence                                           2234445566667778888888888877766553322            


Q ss_pred             ------------------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498          144 ------------------GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK  205 (207)
Q Consensus       144 ------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  205 (207)
                                        ++..+.+|-..|.+.+.|.+|...|+...+.  .|+..+|..+.+++.+.|+..+|.++.++
T Consensus       309 d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e  386 (400)
T COG3071         309 DPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRRE  386 (400)
T ss_pred             CchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHH
Confidence                              3355688888899999999999999976665  78999999999999999999999998876


Q ss_pred             h
Q 045498          206 N  206 (207)
Q Consensus       206 m  206 (207)
                      .
T Consensus       387 ~  387 (400)
T COG3071         387 A  387 (400)
T ss_pred             H
Confidence            4

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.11  E-value=4.4e-09  Score=75.14  Aligned_cols=155  Identities=10%  Similarity=-0.075  Sum_probs=99.1

Q ss_pred             HHHHHhhhhhhhHHHHH-----HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhH-HHHHhhHhhhc
Q 045498           16 GIRINGMCKIREIDSAI-----KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTY-NPLIHDNWEKQ   89 (207)
Q Consensus        16 ~~ll~~~~~~g~~~~a~-----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~~~   89 (207)
                      +.+-.+|.+.|.+.+|.     .....|-+.||-.|-..|.+..+++.|+.+|.+-.+.  .|-.+|| .-..+.+-..+
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~  304 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME  304 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence            44556666777776666     3444666677777777777777777777777776654  2333333 33445566667


Q ss_pred             ChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 045498           90 GRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV  169 (207)
Q Consensus        90 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~  169 (207)
                      +.+++.++|+...+.. +.++.....+...|.-.++++.|.+.++++.+.|+. +...|+.+--+|.-.+++|-++.-|+
T Consensus       305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~  382 (478)
T KOG1129|consen  305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ  382 (478)
T ss_pred             hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence            7777777777766553 335555556666666667777777777777777765 66666666666666666666666666


Q ss_pred             HHHHc
Q 045498          170 QMKEK  174 (207)
Q Consensus       170 ~m~~~  174 (207)
                      +....
T Consensus       383 RAlst  387 (478)
T KOG1129|consen  383 RALST  387 (478)
T ss_pred             HHHhh
Confidence            65543

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.10  E-value=6e-08  Score=70.92  Aligned_cols=186  Identities=16%  Similarity=-0.034  Sum_probs=123.3

Q ss_pred             hhhHHHHHhhhhhhhHHHHH-----HcCC-CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHh
Q 045498           13 HVYGIRINGMCKIREIDSAI-----KKGI-CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNW   86 (207)
Q Consensus        13 ~~~~~ll~~~~~~g~~~~a~-----~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~   86 (207)
                      ..|......|.+.|+.++|.     .... +.++..|+.+-..+...|++++|...|++..+.. +-+..++..+..++.
T Consensus        65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~  143 (296)
T PRK11189         65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALY  143 (296)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            45666667778888888887     2222 3357888889999999999999999999988764 334567777777888


Q ss_pred             hhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 045498           87 EKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK  166 (207)
Q Consensus        87 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~  166 (207)
                      ..|++++|.+.++...+..  |+..........+...++.++|...+++..... .|+.  |.. .......|+...+ .
T Consensus       144 ~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~--~~~-~~~~~~lg~~~~~-~  216 (296)
T PRK11189        144 YGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQ--WGW-NIVEFYLGKISEE-T  216 (296)
T ss_pred             HCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-Cccc--cHH-HHHHHHccCCCHH-H
Confidence            8899999999999887764  332212222223445678899999886655432 2222  221 2222335555443 3


Q ss_pred             HHHHHHHcC---C--CC-ChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          167 LLVQMKEKG---C--FP-DSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       167 ~~~~m~~~~---~--~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      .++.+.+.-   .  .| ...+|..+...+.+.|++++|...|++.
T Consensus       217 ~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~A  262 (296)
T PRK11189        217 LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLA  262 (296)
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            455544321   1  11 2357888999999999999999999875

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.10  E-value=1.9e-07  Score=63.67  Aligned_cols=186  Identities=12%  Similarity=-0.048  Sum_probs=124.1

Q ss_pred             hhHHHHHhhhhhhhHHHHH-----HcCCCc-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhh
Q 045498           14 VYGIRINGMCKIREIDSAI-----KKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE   87 (207)
Q Consensus        14 ~~~~ll~~~~~~g~~~~a~-----~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~   87 (207)
                      +..-+--.|...|+...|.     ...+.| +..+|..+...|-+.|+.+.|.+-|++..+.. +-+..+.|..-..+|.
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~  115 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA  115 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence            3445556666777776666     222233 34567777777777788888887777777664 3455667777777777


Q ss_pred             hcChhhHHHHHHHHHhCC-CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 045498           88 KQGRFSAMALLQTLERDK-YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK  166 (207)
Q Consensus        88 ~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~  166 (207)
                      .|++++|...|++....- ..--..+|..+.-+..+.|+.+.|.+.+++..+.... ...+.-.+.......|++-.|..
T Consensus       116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~  194 (250)
T COG3063         116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL  194 (250)
T ss_pred             CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence            777777777777765442 1122456777777777777778888877777776433 34566667777777777777777


Q ss_pred             HHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHH
Q 045498          167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF  202 (207)
Q Consensus       167 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~  202 (207)
                      .++.....+. ++..+....|+.--..|+-+.+.++
T Consensus       195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y  229 (250)
T COG3063         195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRY  229 (250)
T ss_pred             HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHH
Confidence            7777776654 6777777777777777776666554

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.08  E-value=1.2e-07  Score=64.73  Aligned_cols=162  Identities=15%  Similarity=0.005  Sum_probs=138.0

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 045498           41 FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL  120 (207)
Q Consensus        41 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  120 (207)
                      .+..-|--.|.+.|++..|.+-+++..+.. +-+..+|..+-..|.+.|+.+.|.+.|++..+.... +..+.|..-.-+
T Consensus        36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FL  113 (250)
T COG3063          36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFL  113 (250)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHH
Confidence            446667778999999999999999999875 556678999999999999999999999998887533 678899999999


Q ss_pred             hcCCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHH
Q 045498          121 CRVGRWEEARKKLDQLSEKGLVP-GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA  199 (207)
Q Consensus       121 ~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a  199 (207)
                      |..|++++|...|++......-+ ...+|..+.-+..+.|+.+.|...|++..+.. +-.+.+...+.+...+.|++-.|
T Consensus       114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A  192 (250)
T COG3063         114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA  192 (250)
T ss_pred             HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence            99999999999999988763322 35689999999999999999999999998874 23556788888999999999999


Q ss_pred             HHHHHh
Q 045498          200 SSFLKK  205 (207)
Q Consensus       200 ~~~~~~  205 (207)
                      ..+++.
T Consensus       193 r~~~~~  198 (250)
T COG3063         193 RLYLER  198 (250)
T ss_pred             HHHHHH
Confidence            988875

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.07  E-value=1.6e-07  Score=76.96  Aligned_cols=188  Identities=13%  Similarity=0.068  Sum_probs=147.9

Q ss_pred             HHHHhhhhhhhHHHHH-------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC-----CCcchhhHHHHHhh
Q 045498           17 IRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG-----ITAELVTYNPLIHD   84 (207)
Q Consensus        17 ~ll~~~~~~g~~~~a~-------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~~~~ll~~   84 (207)
                      -.+-++...|+..+++       ..+.+....+-..+.++|...+++++|+.+|.++....     .+++......|.-+
T Consensus       297 Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA  376 (822)
T PRK14574        297 DRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYS  376 (822)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHH
Confidence            4456667778877777       45556566788889999999999999999999997643     12333345788999


Q ss_pred             HhhhcChhhHHHHHHHHHhCCC-----------Ccc---HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 045498           85 NWEKQGRFSAMALLQTLERDKY-----------ELN---IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI  150 (207)
Q Consensus        85 ~~~~~~~~~a~~~~~~m~~~~~-----------~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~  150 (207)
                      +...+++++|..+++.+.+...           .|+   ...+..++..+...|++.+|++.++.+....+. |......
T Consensus       377 ~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~  455 (822)
T PRK14574        377 LNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIA  455 (822)
T ss_pred             HHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence            9999999999999999987321           122   234455677889999999999999999887654 8889999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       151 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      +...+...|.+..|...++..... -+-+..+......++...|++++|..+.++.
T Consensus       456 ~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l  510 (822)
T PRK14574        456 LASIYLARDLPRKAEQELKAVESL-APRSLILERAQAETAMALQEWHQMELLTDDV  510 (822)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHhhh-CCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            999999999999999999777665 2335677778888899999999998887654

>TIGR00540 hemY_coli hemY protein

Probab=99.03  E-value=1.1e-07  Score=72.81  Aligned_cols=178  Identities=10%  Similarity=0.040  Sum_probs=99.6

Q ss_pred             hhhHHHHH-----HcCCCccHHh-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcch--hhHHHHHhhHhhhcChhhHHH
Q 045498           25 IREIDSAI-----KKGICLDVFV-YSSLINGLCTFNRLKEAVELFDKMVAQGITAEL--VTYNPLIHDNWEKQGRFSAMA   96 (207)
Q Consensus        25 ~g~~~~a~-----~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~   96 (207)
                      .|+++.|.     .....|++.. +-....+..+.|+++.|.+.+.+..+..  |+.  ..--.....+...|+++.|..
T Consensus        97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~  174 (409)
T TIGR00540        97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAARH  174 (409)
T ss_pred             CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHH
Confidence            45566655     2223344333 2333455666677777777777776542  333  233334566677777777777


Q ss_pred             HHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHH-HHHHHH---HhcCCHHHHHHHHHHHH
Q 045498           97 LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN-ILINGL---CKKGMIMEADKLLVQMK  172 (207)
Q Consensus        97 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~~---~~~~~~~~a~~~~~~m~  172 (207)
                      .++.+.+... -+..+...+...+...|+++.|.+.+..+.+.+.. +...+. .-..++   ...+..++....+..+.
T Consensus       175 ~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~  252 (409)
T TIGR00540       175 GVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW  252 (409)
T ss_pred             HHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            7777777652 25566777777777777777777777777776543 222221 111111   22222222233444443


Q ss_pred             HcC---CCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          173 EKG---CFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       173 ~~~---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      +..   .+.++..+..+...+...|+.++|.+.+++.
T Consensus       253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~  289 (409)
T TIGR00540       253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDG  289 (409)
T ss_pred             HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence            331   1125666667777777777777777776653

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=1.8e-07  Score=69.88  Aligned_cols=190  Identities=15%  Similarity=0.054  Sum_probs=154.9

Q ss_pred             hhhHHHHHhhhhhhhHHHHH---HcCCCc---cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHh
Q 045498           13 HVYGIRINGMCKIREIDSAI---KKGICL---DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNW   86 (207)
Q Consensus        13 ~~~~~ll~~~~~~g~~~~a~---~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~   86 (207)
                      .|+.++.+-|+-.++-++|.   ++..+.   ....|+.+-+-|....+...|.+-++...+-+ |.|-..|-.|-.+|.
T Consensus       331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYe  409 (559)
T KOG1155|consen  331 ETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYE  409 (559)
T ss_pred             cceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHH
Confidence            35566666677777778877   443333   34678889999999999999999999999885 778899999999999


Q ss_pred             hhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 045498           87 EKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK  166 (207)
Q Consensus        87 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~  166 (207)
                      -.+.+.=|+-.|++..... +-|...|.++-.+|.+.++.++|.+.|......|-. +...+..|...|-+.++..+|..
T Consensus       410 im~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~  487 (559)
T KOG1155|consen  410 IMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQ  487 (559)
T ss_pred             HhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHH
Confidence            9999999999999988875 448899999999999999999999999999988754 66899999999999999999999


Q ss_pred             HHHHHHHc----CC-CC-ChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498          167 LLVQMKEK----GC-FP-DSTSFNTVIQGFLVKNETDRASSFLKK  205 (207)
Q Consensus       167 ~~~~m~~~----~~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~  205 (207)
                      .|....+.    |. .| ...+..-|...+.+.+++++|..+..+
T Consensus       488 ~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~  532 (559)
T KOG1155|consen  488 YYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL  532 (559)
T ss_pred             HHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence            99877653    32 23 233444467778899999998876543

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=98.99  E-value=9.8e-09  Score=81.73  Aligned_cols=167  Identities=22%  Similarity=0.226  Sum_probs=95.8

Q ss_pred             HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC------------------------CcchhhHHHHHhhHhhh
Q 045498           33 KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI------------------------TAELVTYNPLIHDNWEK   88 (207)
Q Consensus        33 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~------------------------~~~~~~~~~ll~~~~~~   88 (207)
                      ..|+.||.+||..+|.-|+..|+.+.|- +|.-|.-...                        .|...||..|+.+|...
T Consensus        18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~h   96 (1088)
T KOG4318|consen   18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRIH   96 (1088)
T ss_pred             HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHhc
Confidence            8899999999999999999999999988 7776653322                        34556777777777777


Q ss_pred             cChhh---HHHHHHHH----HhCCCCccHHHH--------------HHHHHHHhcCCCHHHHHHHH--------------
Q 045498           89 QGRFS---AMALLQTL----ERDKYELNIEVY--------------SLVIDGLCRVGRWEEARKKL--------------  133 (207)
Q Consensus        89 ~~~~~---a~~~~~~m----~~~~~~~~~~~~--------------~~li~~~~~~~~~~~a~~~~--------------  133 (207)
                      |+...   +.+.+..+    ...|+......+              ...+.-..-.|-|+.+.++.              
T Consensus        97 GDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~v  176 (1088)
T KOG4318|consen   97 GDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV  176 (1088)
T ss_pred             cchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHH
Confidence            76544   22211111    111211000000              00011111111122221111              


Q ss_pred             --HHH-------------HhCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchh
Q 045498          134 --DQL-------------SEKGL-VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD  197 (207)
Q Consensus       134 --~~~-------------~~~g~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~  197 (207)
                        +++             .+.+. .|++.+|.+++.+-...|+.+.|..++.+|++.|++.+..-|..|+-+   .++..
T Consensus       177 fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q  253 (1088)
T KOG4318|consen  177 FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQ  253 (1088)
T ss_pred             HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---Cccch
Confidence              111             11111 367778888888888888888888888888888877777766666655   44444


Q ss_pred             HHHHHH
Q 045498          198 RASSFL  203 (207)
Q Consensus       198 ~a~~~~  203 (207)
                      .+..++
T Consensus       254 ~~e~vl  259 (1088)
T KOG4318|consen  254 VFEFVL  259 (1088)
T ss_pred             HHHHHH
Confidence            444333

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.97  E-value=3.5e-07  Score=75.00  Aligned_cols=179  Identities=12%  Similarity=0.037  Sum_probs=130.7

Q ss_pred             hhhhhhhHHHHH-----HcCCCccH--HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhh
Q 045498           21 GMCKIREIDSAI-----KKGICLDV--FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS   93 (207)
Q Consensus        21 ~~~~~g~~~~a~-----~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~   93 (207)
                      ...+.|+++.|+     .....|+.  ..+ .++..+...|+.++|+..+++.... .+........+...+...|++++
T Consensus        43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~  120 (822)
T PRK14574         43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQ  120 (822)
T ss_pred             HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHH
Confidence            345778888887     33344543  244 8888888889999999999998721 12222233333557778899999


Q ss_pred             HHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045498           94 AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE  173 (207)
Q Consensus        94 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  173 (207)
                      |.++++++.+.... +...+..++..+...++.++|++.++.+...  .|+...+..++..+...++..+|...++++.+
T Consensus       121 Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~  197 (822)
T PRK14574        121 ALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR  197 (822)
T ss_pred             HHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            99999999887643 5677778888899999999999999998887  45655564444444456666669999999988


Q ss_pred             cCCCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498          174 KGCFPDSTSFNTVIQGFLVKNETDRASSFLKK  205 (207)
Q Consensus       174 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  205 (207)
                      .. +-+...+..+..++.+.|-...|.++.++
T Consensus       198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~  228 (822)
T PRK14574        198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKE  228 (822)
T ss_pred             hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence            73 33677788888999999988888877653

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.97  E-value=1.6e-07  Score=68.19  Aligned_cols=148  Identities=18%  Similarity=0.151  Sum_probs=88.5

Q ss_pred             HhhhhhhhHHHHH---HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhh----hcChh
Q 045498           20 NGMCKIREIDSAI---KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE----KQGRF   92 (207)
Q Consensus        20 ~~~~~~g~~~~a~---~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~   92 (207)
                      ..+...|++++|+   ..+  .+.......+..+.+.++++.|.+.++.|.+.+  .| .+...+..++..    ...+.
T Consensus       110 ~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~  184 (290)
T PF04733_consen  110 TILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQ  184 (290)
T ss_dssp             HHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCC
T ss_pred             HHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHH
Confidence            4455567777777   222  455666666777777777777777777776543  22 333333333322    23566


Q ss_pred             hHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHH
Q 045498           93 SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI-MEADKLLVQM  171 (207)
Q Consensus        93 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m  171 (207)
                      +|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+....+.. +..+...++.+....|+. +.+.+.+.++
T Consensus       185 ~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL  262 (290)
T PF04733_consen  185 DAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQL  262 (290)
T ss_dssp             HHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred             HHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence            777777776554 3556667777777777777777777777776665443 555666666666666666 5566677766


Q ss_pred             HHc
Q 045498          172 KEK  174 (207)
Q Consensus       172 ~~~  174 (207)
                      +..
T Consensus       263 ~~~  265 (290)
T PF04733_consen  263 KQS  265 (290)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.96  E-value=4.9e-07  Score=74.48  Aligned_cols=152  Identities=10%  Similarity=-0.014  Sum_probs=73.7

Q ss_pred             hHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhh
Q 045498           15 YGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK   88 (207)
Q Consensus        15 ~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~   88 (207)
                      ..-.+......|+.++|+      ....+.+...+..+...+.+.|++++|..+|++..+.. +.+...+..+..++...
T Consensus        18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~   96 (765)
T PRK10049         18 IADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADA   96 (765)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence            334444445555555554      11112233345555555555555555555555554442 23334444555555555


Q ss_pred             cChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 045498           89 QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL  168 (207)
Q Consensus        89 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~  168 (207)
                      |++++|...+++..+.. +.+.. +..+..++...|+.++|...+++..+.... +...+..+...+...|..++|...+
T Consensus        97 g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l  173 (765)
T PRK10049         97 GQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAI  173 (765)
T ss_pred             CCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHH
Confidence            55555555555555442 22333 445555555555555555555555554322 3333344444555555555555555


Q ss_pred             HH
Q 045498          169 VQ  170 (207)
Q Consensus       169 ~~  170 (207)
                      +.
T Consensus       174 ~~  175 (765)
T PRK10049        174 DD  175 (765)
T ss_pred             Hh
Confidence            43

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.95  E-value=2.1e-07  Score=71.81  Aligned_cols=191  Identities=16%  Similarity=0.108  Sum_probs=140.2

Q ss_pred             HHHHHhhhhhhhHHHHH----------H--cC--CCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhC-----CC-Ccch
Q 045498           16 GIRINGMCKIREIDSAI----------K--KG--ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ-----GI-TAEL   75 (207)
Q Consensus        16 ~~ll~~~~~~g~~~~a~----------~--~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~~-~~~~   75 (207)
                      +.+...|...+++++|.          .  .|  .+.-..+++.|-.+|.+.|++++|...+++..+-     +. .|..
T Consensus       245 ~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v  324 (508)
T KOG1840|consen  245 NILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEV  324 (508)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHH
Confidence            34666777888888887          2  12  2223466788888999999999999888876431     21 1222


Q ss_pred             -hhHHHHHhhHhhhcChhhHHHHHHHHHhC---CCCc----cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-----C--
Q 045498           76 -VTYNPLIHDNWEKQGRFSAMALLQTLERD---KYEL----NIEVYSLVIDGLCRVGRWEEARKKLDQLSEK-----G--  140 (207)
Q Consensus        76 -~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----g--  140 (207)
                       ..++.+...+...+++++|..++....+.   -+.+    ...+++.+-..|.+.|++++|.++++.....     |  
T Consensus       325 ~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~  404 (508)
T KOG1840|consen  325 AAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKK  404 (508)
T ss_pred             HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCc
Confidence             34667778889999999999998875432   1222    2468899999999999999999999987654     1  


Q ss_pred             CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CC-ChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK----GC-FP-DSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       141 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      ..-.-..++.|...|.+.+.+.+|.++|.+...-    |. .| ...+|..|...|.+.|+++.|.++.+.+
T Consensus       405 ~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~  476 (508)
T KOG1840|consen  405 DYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV  476 (508)
T ss_pred             ChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            1112446788889999999999999999876532    31 22 3478999999999999999999988764

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.91  E-value=9.5e-08  Score=69.31  Aligned_cols=147  Identities=18%  Similarity=0.141  Sum_probs=87.6

Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHH----hcC
Q 045498           48 NGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL----CRV  123 (207)
Q Consensus        48 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~----~~~  123 (207)
                      ..+...|++++|++++..-      .+.......+.++.+.++++.|.+.++.|.+.+  .| .+...+..++    .-.
T Consensus       110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~  180 (290)
T PF04733_consen  110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGG  180 (290)
T ss_dssp             HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCc
Confidence            3445566677666666432      244555666777777777788877777777653  22 2333333332    223


Q ss_pred             CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCch-hHHHHH
Q 045498          124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNET-DRASSF  202 (207)
Q Consensus       124 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~  202 (207)
                      ..+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..+.+ +-++.+...++-+....|+. +.+.++
T Consensus       181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~  258 (290)
T PF04733_consen  181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERY  258 (290)
T ss_dssp             TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred             hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence            3577777788776554 44567777777777777888888887777765543 23556666677776666666 445555


Q ss_pred             HHh
Q 045498          203 LKK  205 (207)
Q Consensus       203 ~~~  205 (207)
                      +.+
T Consensus       259 l~q  261 (290)
T PF04733_consen  259 LSQ  261 (290)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.89  E-value=1.4e-06  Score=59.91  Aligned_cols=158  Identities=9%  Similarity=0.040  Sum_probs=117.6

Q ss_pred             HHhhhhhhhHHHHH--HcC-CCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHH
Q 045498           19 INGMCKIREIDSAI--KKG-ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM   95 (207)
Q Consensus        19 l~~~~~~g~~~~a~--~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~   95 (207)
                      +..|.+.|+++...  ..+ ..|.        ..+...++.+++...+++..+.+ +.+...|..+-..+...|++++|.
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~   93 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL   93 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            45677788877765  111 1111        01223566788888888877765 667889999999999999999999


Q ss_pred             HHHHHHHhCCCCccHHHHHHHHHHH-hcCCC--HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045498           96 ALLQTLERDKYELNIEVYSLVIDGL-CRVGR--WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK  172 (207)
Q Consensus        96 ~~~~~m~~~~~~~~~~~~~~li~~~-~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  172 (207)
                      ..+++..+... -+...+..+..++ ...|+  .++|.+++++..+.+.. +...+..+...+.+.|++++|...|+.+.
T Consensus        94 ~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL  171 (198)
T PRK10370         94 LAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVL  171 (198)
T ss_pred             HHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999888763 3677787777764 67777  59999999999998665 77888899999999999999999999998


Q ss_pred             HcCCCCChhhHHHHHHH
Q 045498          173 EKGCFPDSTSFNTVIQG  189 (207)
Q Consensus       173 ~~~~~p~~~~~~~l~~~  189 (207)
                      +. .+|+..-+. +|..
T Consensus       172 ~l-~~~~~~r~~-~i~~  186 (198)
T PRK10370        172 DL-NSPRVNRTQ-LVES  186 (198)
T ss_pred             hh-CCCCccHHH-HHHH
Confidence            87 345554443 3344

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.89  E-value=3.4e-06  Score=58.73  Aligned_cols=157  Identities=17%  Similarity=0.124  Sum_probs=121.8

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcC
Q 045498           44 SSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV  123 (207)
Q Consensus        44 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  123 (207)
                      ..+-..+...|+-+....+........ +-|....+...+...+.|++..|...+++..... ++|..+|+.+--+|.+.
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~  147 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL  147 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence            555666667777777777776654432 4466677778888888999999999998887765 66888899999999999


Q ss_pred             CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHH
Q 045498          124 GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL  203 (207)
Q Consensus       124 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~  203 (207)
                      |+.++|..-|.+..+.... +....+.+.-.+.-.|+.+.|..++......+. -|...-..|.......|+++.|..+.
T Consensus       148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~  225 (257)
T COG5010         148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIA  225 (257)
T ss_pred             cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhc
Confidence            9999999988888887544 566778888888888999999999888887643 26677777888888889998888765


Q ss_pred             H
Q 045498          204 K  204 (207)
Q Consensus       204 ~  204 (207)
                      .
T Consensus       226 ~  226 (257)
T COG5010         226 V  226 (257)
T ss_pred             c
Confidence            3

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.88  E-value=4.8e-07  Score=62.13  Aligned_cols=147  Identities=11%  Similarity=0.077  Sum_probs=111.7

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC
Q 045498           46 LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR  125 (207)
Q Consensus        46 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~  125 (207)
                      -+-.|.+.|+++.+..-.+.+...    . .       .+...++.+++...++...+.. +.+...|..+...|...|+
T Consensus        22 ~~~~Y~~~g~~~~v~~~~~~~~~~----~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~   88 (198)
T PRK10370         22 CVGSYLLSPKWQAVRAEYQRLADP----L-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRND   88 (198)
T ss_pred             HHHHHHHcchHHHHHHHHHHHhCc----c-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCC
Confidence            344688889988875554332211    1 1       1223666677877788777765 4478899999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCChhhHHHHHHHH-HhcCC--HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHH
Q 045498          126 WEEARKKLDQLSEKGLVPGVVTYNILINGL-CKKGM--IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF  202 (207)
Q Consensus       126 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~-~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~  202 (207)
                      +++|...+++..+.... +...+..+..++ .+.|+  .++|..++++..+.+. -+..++..+...+...|++++|...
T Consensus        89 ~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA~~~~~~g~~~~Ai~~  166 (198)
T PRK10370         89 YDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALMLLASDAFMQADYAQAIEL  166 (198)
T ss_pred             HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999999988654 677788887764 67777  5999999999998743 3678888899999999999999999


Q ss_pred             HHhhC
Q 045498          203 LKKNM  207 (207)
Q Consensus       203 ~~~m~  207 (207)
                      |++++
T Consensus       167 ~~~aL  171 (198)
T PRK10370        167 WQKVL  171 (198)
T ss_pred             HHHHH
Confidence            98863

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.88  E-value=9.9e-08  Score=72.00  Aligned_cols=126  Identities=13%  Similarity=0.089  Sum_probs=103.1

Q ss_pred             HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccH
Q 045498           33 KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ--GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI  110 (207)
Q Consensus        33 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~  110 (207)
                      ..+.+.++.....+++.+....+.+.+..++.+....  ....-..|.+++++.|...|..+.+..+++.=...|+-||.
T Consensus        59 ~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~  138 (429)
T PF10037_consen   59 ERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDN  138 (429)
T ss_pred             hcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCCh
Confidence            4556667778888888888888888899888888765  23333456789999999999999999999998999999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 045498          111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK  158 (207)
Q Consensus       111 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~  158 (207)
                      .+++.+++.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus       139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            999999999999999999999998888877777777777777666655

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.86  E-value=4.2e-06  Score=65.34  Aligned_cols=51  Identities=16%  Similarity=0.232  Sum_probs=34.9

Q ss_pred             HhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 045498           20 NGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG   70 (207)
Q Consensus        20 ~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~   70 (207)
                      ..+...|++++|+      ...+.............+.+.|+.++|..+|..+.+.+
T Consensus        12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN   68 (517)
T PF12569_consen   12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN   68 (517)
T ss_pred             HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            4456677888877      33333345556667777778888888888888887775

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.85  E-value=9.8e-07  Score=68.25  Aligned_cols=194  Identities=16%  Similarity=0.087  Sum_probs=140.8

Q ss_pred             hhhHHHHHhhhhhhhHHHHH------------HcC-CCccHHh-HHHHHHHHHhcCChhHHHHHHHHHHhC-----C--C
Q 045498           13 HVYGIRINGMCKIREIDSAI------------KKG-ICLDVFV-YSSLINGLCTFNRLKEAVELFDKMVAQ-----G--I   71 (207)
Q Consensus        13 ~~~~~ll~~~~~~g~~~~a~------------~~~-~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~--~   71 (207)
                      .+...+...|...|+++.|.            ..| ..|.+.+ .+.+-..|...+++++|..+|+++...     |  .
T Consensus       200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h  279 (508)
T KOG1840|consen  200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH  279 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence            46666899999999999999            122 1233322 333566788899999999999998642     2  1


Q ss_pred             CcchhhHHHHHhhHhhhcChhhHHHHHHHHHhC-----C-CCcc-HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-----
Q 045498           72 TAELVTYNPLIHDNWEKQGRFSAMALLQTLERD-----K-YELN-IEVYSLVIDGLCRVGRWEEARKKLDQLSEK-----  139 (207)
Q Consensus        72 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~-~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----  139 (207)
                      +.-..+++.|-.+|.+.|++++|...+++..+.     + ..|. ...++.+...+...++++.|..+++...+.     
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~  359 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP  359 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence            222356777888899999999988877764322     1 1222 235667778889999999999998865432     


Q ss_pred             CCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-ChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          140 GLV--PGVVTYNILINGLCKKGMIMEADKLLVQMKEK------GCFP-DSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       140 g~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      |..  --..+++.|...|...|++++|.++++.....      +..+ ....++.|...|.+.+..++|.++|.+.
T Consensus       360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~  435 (508)
T KOG1840|consen  360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA  435 (508)
T ss_pred             cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence            211  12468999999999999999999999988653      1122 3467888999999999999999998763

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.83  E-value=4.4e-06  Score=62.75  Aligned_cols=156  Identities=10%  Similarity=0.052  Sum_probs=106.8

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHH---HHhhHhhhcChhhHHHHHHHHHhCCCCcc-HHHHHHHHHHHhc
Q 045498           47 INGLCTFNRLKEAVELFDKMVAQGITAELVTYNP---LIHDNWEKQGRFSAMALLQTLERDKYELN-IEVYSLVIDGLCR  122 (207)
Q Consensus        47 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~  122 (207)
                      ...+...|++++|.+.+++..+.. |.+...+..   ........+..+.+.+.+..  .....|+ ......+...+..
T Consensus        50 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~  126 (355)
T cd05804          50 ALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEE  126 (355)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHH
Confidence            345567899999999999988763 334444442   11112223445555555544  1122233 3444556678889


Q ss_pred             CCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCh--hhHHHHHHHHHhcCchhHH
Q 045498          123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC-FPDS--TSFNTVIQGFLVKNETDRA  199 (207)
Q Consensus       123 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~--~~~~~l~~~~~~~~~~~~a  199 (207)
                      .|++++|.+.+++..+.... +...+..+...+...|++++|...+++..+... .|+.  ..|..+...+...|++++|
T Consensus       127 ~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A  205 (355)
T cd05804         127 AGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA  205 (355)
T ss_pred             cCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence            99999999999999887533 466778888899999999999999998876522 1222  3456788889999999999


Q ss_pred             HHHHHhh
Q 045498          200 SSFLKKN  206 (207)
Q Consensus       200 ~~~~~~m  206 (207)
                      ..++++.
T Consensus       206 ~~~~~~~  212 (355)
T cd05804         206 LAIYDTH  212 (355)
T ss_pred             HHHHHHH
Confidence            9998864

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.80  E-value=1.2e-06  Score=66.01  Aligned_cols=188  Identities=18%  Similarity=0.134  Sum_probs=128.9

Q ss_pred             hHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhh
Q 045498           15 YGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK   88 (207)
Q Consensus        15 ~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~   88 (207)
                      |.-+...|....+-++..      ..--+-|+.+|..--....-.+++++|..=|++..+.. +-+...|-.+--+..+.
T Consensus       363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~  441 (606)
T KOG0547|consen  363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQ  441 (606)
T ss_pred             HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHH
Confidence            555556666655544444      12223356667766666666777888888887777654 33455566666666788


Q ss_pred             cChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC-------CChhhHHHHHHHHHhcCCH
Q 045498           89 QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV-------PGVVTYNILINGLCKKGMI  161 (207)
Q Consensus        89 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~-------~~~~~~~~li~~~~~~~~~  161 (207)
                      +.++++...|++.+++ ++..+.+|+-....+...++++.|.+.|+...+...+       +.+..--+++..- -.+++
T Consensus       442 ~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~  519 (606)
T KOG0547|consen  442 HKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDI  519 (606)
T ss_pred             HHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhH
Confidence            8888888888888776 4556778888888999999999999999887765322       1111112222221 23788


Q ss_pred             HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       162 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      ..|.++++...+...+ ...+|..|...-.+.|+.++|+++|++.
T Consensus       520 ~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEks  563 (606)
T KOG0547|consen  520 NQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKS  563 (606)
T ss_pred             HHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            8899988888776322 4577999999999999999999999863

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.80  E-value=4.3e-06  Score=60.06  Aligned_cols=156  Identities=13%  Similarity=0.052  Sum_probs=107.6

Q ss_pred             HHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcch----hhHHHHHhhHhh
Q 045498           18 RINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL----VTYNPLIHDNWE   87 (207)
Q Consensus        18 ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~   87 (207)
                      |-.-|-..|-+|.|+      ......-......|+..|-..++|++|+++-+++.+.+-.+..    ..|--|-..+..
T Consensus       113 L~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~  192 (389)
T COG2956         113 LGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA  192 (389)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence            445566778888887      2222333456777888888889999999988888776533322    233444455556


Q ss_pred             hcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 045498           88 KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL  167 (207)
Q Consensus        88 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~  167 (207)
                      ..+.+.|...+.+..+.+.+ .+..--.+-+.....|+++.|.+.++...+.+...-..+...|..+|.+.|++++....
T Consensus       193 ~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f  271 (389)
T COG2956         193 SSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF  271 (389)
T ss_pred             hhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            67778888888877766422 33333445567778888888888888888876555566777888888888888888888


Q ss_pred             HHHHHHc
Q 045498          168 LVQMKEK  174 (207)
Q Consensus       168 ~~~m~~~  174 (207)
                      +.++.+.
T Consensus       272 L~~~~~~  278 (389)
T COG2956         272 LRRAMET  278 (389)
T ss_pred             HHHHHHc
Confidence            8777665

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.80  E-value=1e-06  Score=57.44  Aligned_cols=91  Identities=8%  Similarity=-0.134  Sum_probs=43.8

Q ss_pred             HHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 045498           81 LIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM  160 (207)
Q Consensus        81 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~  160 (207)
                      +-..+...|++++|...|+...... +.+...+..+..++.+.|++++|...|+........ +...+..+..++.+.|+
T Consensus        30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~g~  107 (144)
T PRK15359         30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMMGE  107 (144)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcCC
Confidence            3344444555555555555544443 224444444555555555555555555555544321 44444445555555555


Q ss_pred             HHHHHHHHHHHHH
Q 045498          161 IMEADKLLVQMKE  173 (207)
Q Consensus       161 ~~~a~~~~~~m~~  173 (207)
                      +++|...|+...+
T Consensus       108 ~~eAi~~~~~Al~  120 (144)
T PRK15359        108 PGLAREAFQTAIK  120 (144)
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555555444

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.79  E-value=1.3e-08  Score=49.23  Aligned_cols=33  Identities=45%  Similarity=0.945  Sum_probs=26.7

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc
Q 045498           42 VYSSLINGLCTFNRLKEAVELFDKMVAQGITAE   74 (207)
Q Consensus        42 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~   74 (207)
                      +|+++|++|++.|++++|.++|++|.+.|++||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            678888888888888888888888888887776

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.78  E-value=7.2e-06  Score=60.09  Aligned_cols=131  Identities=16%  Similarity=-0.073  Sum_probs=104.1

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHH
Q 045498           40 VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG  119 (207)
Q Consensus        40 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  119 (207)
                      ...|..+-..+.+.|++++|...|++..+.. +.+...|+.+-..+...|++++|...|++..+.... +..++..+..+
T Consensus        64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~  141 (296)
T PRK11189         64 AQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIA  141 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence            4557778888999999999999999998875 456789999999999999999999999999876533 56778888888


Q ss_pred             HhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498          120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK  174 (207)
Q Consensus       120 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  174 (207)
                      +...|++++|.+.++...+..  |+..............+++++|...|+.....
T Consensus       142 l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~  194 (296)
T PRK11189        142 LYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK  194 (296)
T ss_pred             HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence            999999999999999998864  43322222223345677899999999775543

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.78  E-value=1.7e-08  Score=48.79  Aligned_cols=33  Identities=55%  Similarity=0.870  Sum_probs=20.2

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 045498          147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPD  179 (207)
Q Consensus       147 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~  179 (207)
                      +|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            456666666666666666666666666666555

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.77  E-value=5e-06  Score=67.21  Aligned_cols=149  Identities=11%  Similarity=0.055  Sum_probs=113.0

Q ss_pred             HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHH
Q 045498           33 KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV  112 (207)
Q Consensus        33 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~  112 (207)
                      .+....++..+-.|.....+.|.+++|..+++...+.. |-+......+..++.+.+++++|....++....... +...
T Consensus        79 ~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~  156 (694)
T PRK15179         79 VRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SARE  156 (694)
T ss_pred             HHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHH
Confidence            44556667888888888888889999999888888763 334556777778888888899988888888877533 5667


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 045498          113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT  185 (207)
Q Consensus       113 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~  185 (207)
                      ...+..++.+.|++++|..+|++....+. -+..++..+..++-..|+.++|...|+...+. ..|....|+.
T Consensus       157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~  227 (694)
T PRK15179        157 ILLEAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTR  227 (694)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHH
Confidence            77777888888999999999988887433 24778888888888889999998888888765 2333344433

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.76  E-value=2.8e-06  Score=63.81  Aligned_cols=168  Identities=14%  Similarity=0.086  Sum_probs=109.8

Q ss_pred             hhhhhHHHHH-----HcCC-CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHH
Q 045498           23 CKIREIDSAI-----KKGI-CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA   96 (207)
Q Consensus        23 ~~~g~~~~a~-----~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~   96 (207)
                      ...|++++|+     -.++ ..+..+..-+.+.|-...++..|++++.+.... ++.|+.+.+-|-..|-+.|+-..|++
T Consensus       535 e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq  613 (840)
T KOG2003|consen  535 EALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQ  613 (840)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhh
Confidence            3455666665     2222 234445555555666666666666666655443 45667777777777777777777776


Q ss_pred             HHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH-HhcCCHHHHHHHHHHHHHcC
Q 045498           97 LLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL-CKKGMIMEADKLLVQMKEKG  175 (207)
Q Consensus        97 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~-~~~~~~~~a~~~~~~m~~~~  175 (207)
                      .+-+--+. ++-+..+..-+...|....-++++...|++..-  +.|+..-|..++..| .+.|++.+|.++|++.... 
T Consensus       614 ~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-  689 (840)
T KOG2003|consen  614 CHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-  689 (840)
T ss_pred             hhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-
Confidence            65443332 344666666666677777777777777776544  367888888777444 5678888888888887765 


Q ss_pred             CCCChhhHHHHHHHHHhcCc
Q 045498          176 CFPDSTSFNTVIQGFLVKNE  195 (207)
Q Consensus       176 ~~p~~~~~~~l~~~~~~~~~  195 (207)
                      ++-|......|++.+...|.
T Consensus       690 fpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  690 FPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             CccchHHHHHHHHHhccccc
Confidence            66677788888887777763

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.76  E-value=2.8e-06  Score=68.66  Aligned_cols=133  Identities=11%  Similarity=0.065  Sum_probs=115.0

Q ss_pred             CCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 045498           71 ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI  150 (207)
Q Consensus        71 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~  150 (207)
                      .+.+...+..|..+..+.|..++|..+++...+.... +......+..++.+.+++++|...+++....... +......
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~  159 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL  159 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence            4556788888999999999999999999999987422 5677888899999999999999999999998544 5667778


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       151 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      +..++.+.|++++|..+|+++...+ +-+..++..+..++-..|+.++|...|++.
T Consensus       160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a  214 (694)
T PRK15179        160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAG  214 (694)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            8899999999999999999999842 335789999999999999999999999875

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.75  E-value=2.1e-08  Score=48.13  Aligned_cols=33  Identities=27%  Similarity=0.512  Sum_probs=25.1

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc
Q 045498           41 FVYSSLINGLCTFNRLKEAVELFDKMVAQGITA   73 (207)
Q Consensus        41 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~   73 (207)
                      .+|+.+|.+|.+.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            467777777777777777777777777777766

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.74  E-value=1.4e-06  Score=56.75  Aligned_cols=106  Identities=12%  Similarity=-0.108  Sum_probs=90.1

Q ss_pred             HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHH
Q 045498           33 KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV  112 (207)
Q Consensus        33 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~  112 (207)
                      +..+..++..+..+...+.+.|++++|...|++..... +.+...|..+-.++...|++++|...|+...+.. +.+...
T Consensus        17 ~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a   94 (144)
T PRK15359         17 KQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEP   94 (144)
T ss_pred             HHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHH
Confidence            44444455556677888899999999999999998875 5677889999999999999999999999999875 447888


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHhCC
Q 045498          113 YSLVIDGLCRVGRWEEARKKLDQLSEKG  140 (207)
Q Consensus       113 ~~~li~~~~~~~~~~~a~~~~~~~~~~g  140 (207)
                      +..+..++.+.|++++|...|+...+..
T Consensus        95 ~~~lg~~l~~~g~~~eAi~~~~~Al~~~  122 (144)
T PRK15359         95 VYQTGVCLKMMGEPGLAREAFQTAIKMS  122 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            9999999999999999999999998874

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.72  E-value=3.4e-08  Score=47.41  Aligned_cols=33  Identities=39%  Similarity=0.475  Sum_probs=18.8

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 045498          146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFP  178 (207)
Q Consensus       146 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p  178 (207)
                      .+|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            355555555555555555555555555555554

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.72  E-value=5.5e-07  Score=68.07  Aligned_cols=125  Identities=14%  Similarity=0.150  Sum_probs=107.1

Q ss_pred             CCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCC--CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChh
Q 045498           69 QGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK--YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV  146 (207)
Q Consensus        69 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~  146 (207)
                      .+.+.+......+++.+....+.+.+..++.++....  ...-..|.+++++.|.+.|..+.+..+++.=...|+-||..
T Consensus        60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~  139 (429)
T PF10037_consen   60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF  139 (429)
T ss_pred             cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence            4456677888889999999999999999999887662  22234567899999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 045498          147 TYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK  193 (207)
Q Consensus       147 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~  193 (207)
                      +++.|+..+.+.|++..|.++...|..++.-.++.|+..-+.+|.+-
T Consensus       140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            99999999999999999999999999887777777777777766554

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.72  E-value=6.9e-06  Score=58.08  Aligned_cols=162  Identities=13%  Similarity=0.021  Sum_probs=117.8

Q ss_pred             chhhhHHHHHhhhhhhhHHHHH-----HcCCCc-c---HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchh---hH
Q 045498           11 NFHVYGIRINGMCKIREIDSAI-----KKGICL-D---VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELV---TY   78 (207)
Q Consensus        11 ~~~~~~~ll~~~~~~g~~~~a~-----~~~~~~-~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~   78 (207)
                      ....+-.....+.+.|++++|.     -....| +   ..++..+..++.+.|++++|+..++++.+... .+..   ++
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~a~  110 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP-NHPDADYAY  110 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCchHHHH
Confidence            3456777778888999999988     112222 2   24677788899999999999999999987642 1222   34


Q ss_pred             HHHHhhHhhh--------cChhhHHHHHHHHHhCCCCccHHHH-----------------HHHHHHHhcCCCHHHHHHHH
Q 045498           79 NPLIHDNWEK--------QGRFSAMALLQTLERDKYELNIEVY-----------------SLVIDGLCRVGRWEEARKKL  133 (207)
Q Consensus        79 ~~ll~~~~~~--------~~~~~a~~~~~~m~~~~~~~~~~~~-----------------~~li~~~~~~~~~~~a~~~~  133 (207)
                      ..+-.++...        |+.+.|.+.++...+.... +....                 ..+...+.+.|++++|...+
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~  189 (235)
T TIGR03302       111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRF  189 (235)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            4444445443        7888999999998876432 22111                 13456678899999999999


Q ss_pred             HHHHhCCCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498          134 DQLSEKGLV-P-GVVTYNILINGLCKKGMIMEADKLLVQMKEK  174 (207)
Q Consensus       134 ~~~~~~g~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  174 (207)
                      +...+.... | ....+..+..++...|++++|..+++.+...
T Consensus       190 ~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       190 ETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            998876321 2 3568889999999999999999999988765

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.71  E-value=3e-06  Score=58.94  Aligned_cols=135  Identities=14%  Similarity=-0.067  Sum_probs=115.6

Q ss_pred             CCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHH
Q 045498           36 ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL  115 (207)
Q Consensus        36 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~  115 (207)
                      .+.+....+.......+.|++..|...|.+..... ++|..+|+.+--+|.+.|++++|..-|.+..+... -+....+.
T Consensus        96 ~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nN  173 (257)
T COG5010          96 YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP-NEPSIANN  173 (257)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc-CCchhhhh
Confidence            34455566778999999999999999999998765 78999999999999999999999999999887643 35678889


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045498          116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE  173 (207)
Q Consensus       116 li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  173 (207)
                      +.-.+.-.|+++.|..++......+.. |...-..+.......|++++|.++...-..
T Consensus       174 lgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~e~~  230 (257)
T COG5010         174 LGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQELL  230 (257)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcccccc
Confidence            999999999999999999999887644 777888889999999999999998775443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.71  E-value=7.1e-07  Score=72.08  Aligned_cols=170  Identities=16%  Similarity=0.051  Sum_probs=132.7

Q ss_pred             cCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCcchhhHHHHHhhHhh------------hcChhhHHHHHHH
Q 045498           34 KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG-ITAELVTYNPLIHDNWE------------KQGRFSAMALLQT  100 (207)
Q Consensus        34 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~------------~~~~~~a~~~~~~  100 (207)
                      .....|+..++.+-..+.+..+|..|.+-|+...+.- ..+|+.+.-.|-+.|..            .+..++|+++|.+
T Consensus       558 ~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~k  637 (1018)
T KOG2002|consen  558 NIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGK  637 (1018)
T ss_pred             hcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHH
Confidence            4445567777778888889999999988777766532 23465555555554432            3345679999999


Q ss_pred             HHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC
Q 045498          101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK-GCFPD  179 (207)
Q Consensus       101 m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~  179 (207)
                      ..+.. +.|...-|.+--.++..|++..|..+|.+..+.... ...+|-.+..+|...|++..|.++|+...+. .-..+
T Consensus       638 vL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~  715 (1018)
T KOG2002|consen  638 VLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNR  715 (1018)
T ss_pred             HHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            88876 347888888889999999999999999999987542 5678999999999999999999999986654 44567


Q ss_pred             hhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498          180 STSFNTVIQGFLVKNETDRASSFLKK  205 (207)
Q Consensus       180 ~~~~~~l~~~~~~~~~~~~a~~~~~~  205 (207)
                      ......|.+++-+.|.+.+|.+....
T Consensus       716 ~~vl~~Lara~y~~~~~~eak~~ll~  741 (1018)
T KOG2002|consen  716 SEVLHYLARAWYEAGKLQEAKEALLK  741 (1018)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            88899999999999999999887654

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.69  E-value=3.3e-06  Score=54.30  Aligned_cols=96  Identities=17%  Similarity=0.004  Sum_probs=57.5

Q ss_pred             hHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 045498           77 TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC  156 (207)
Q Consensus        77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~  156 (207)
                      ....+...+...|++++|.+.++.....+ +.+...+..+...+.+.|+++.|...++...+.+.. +...+..+...+.
T Consensus        19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~   96 (135)
T TIGR02552        19 QIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECLL   96 (135)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHH
Confidence            34444555566666666666666665544 225556666666666666666666666666555322 4555555666666


Q ss_pred             hcCCHHHHHHHHHHHHHc
Q 045498          157 KKGMIMEADKLLVQMKEK  174 (207)
Q Consensus       157 ~~~~~~~a~~~~~~m~~~  174 (207)
                      ..|++++|...|+...+.
T Consensus        97 ~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        97 ALGEPESALKALDLAIEI  114 (135)
T ss_pred             HcCCHHHHHHHHHHHHHh
Confidence            666666666666666654

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.69  E-value=3.5e-06  Score=55.02  Aligned_cols=128  Identities=16%  Similarity=0.145  Sum_probs=77.8

Q ss_pred             hHHHHHhhHhhhcChhhHHHHHHHHHhCCCCc--cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCh--hhHHHHH
Q 045498           77 TYNPLIHDNWEKQGRFSAMALLQTLERDKYEL--NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV--VTYNILI  152 (207)
Q Consensus        77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li  152 (207)
                      .|..++..+ ..++...+...++.+.+.....  .....-.+...+...|++++|...|+........|+.  ...-.|.
T Consensus        14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA   92 (145)
T PF09976_consen   14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA   92 (145)
T ss_pred             HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence            344444444 3666677777777766653221  1223333446677777888888888777776533322  2334456


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhhC
Q 045498          153 NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM  207 (207)
Q Consensus       153 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~  207 (207)
                      ..+...|++++|...++.....  ......+......+.+.|++++|...|++.|
T Consensus        93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            7777778888888777654332  2344556667777778888888888777653

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.67  E-value=7.5e-07  Score=54.01  Aligned_cols=78  Identities=15%  Similarity=0.288  Sum_probs=55.1

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCChhhHHH
Q 045498          115 LVIDGLCRVGRWEEARKKLDQLSEKGL-VPGVVTYNILINGLCKKG--------MIMEADKLLVQMKEKGCFPDSTSFNT  185 (207)
Q Consensus       115 ~li~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~m~~~~~~p~~~~~~~  185 (207)
                      .-|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..        +.-+.+.+|++|...+++|+..||+.
T Consensus        30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni  109 (120)
T PF08579_consen   30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI  109 (120)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence            344455555777777777777777777 777777777777766542        23456777788887778888888888


Q ss_pred             HHHHHHh
Q 045498          186 VIQGFLV  192 (207)
Q Consensus       186 l~~~~~~  192 (207)
                      ++..+.+
T Consensus       110 vl~~Llk  116 (120)
T PF08579_consen  110 VLGSLLK  116 (120)
T ss_pred             HHHHHHH
Confidence            8777654

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.66  E-value=6.8e-06  Score=61.84  Aligned_cols=151  Identities=13%  Similarity=0.035  Sum_probs=111.9

Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHH
Q 045498           50 LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA  129 (207)
Q Consensus        50 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a  129 (207)
                      +-..|+.++|++.|-++..- +..+..+.-.+.+.|-...+...|++++.+.... ++.|..+.+.+...|-+.|+-..|
T Consensus       534 ~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqa  611 (840)
T KOG2003|consen  534 AEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQA  611 (840)
T ss_pred             HHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhh
Confidence            44567777777777666432 1224455666666777777777777777655443 455678888888999999998888


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH-HhcCchhHHHHHHHh
Q 045498          130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF-LVKNETDRASSFLKK  205 (207)
Q Consensus       130 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~~~~~~a~~~~~~  205 (207)
                      ++.+-.--+. ++.+..+...|...|....-++++...|++..-  ++|+..-|..++..| .+.|++.+|..++++
T Consensus       612 fq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~  685 (840)
T KOG2003|consen  612 FQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKD  685 (840)
T ss_pred             hhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            8876544333 345788888888999999899999999987654  689999999988755 678999999999875

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.66  E-value=3.2e-06  Score=63.64  Aligned_cols=123  Identities=20%  Similarity=0.148  Sum_probs=80.6

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhc
Q 045498           43 YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR  122 (207)
Q Consensus        43 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  122 (207)
                      ...|+..+...++++.|+.+|+++.+..  |+  ....+.+.+...++-.+|.+++.+..+.. +-+......-...+.+
T Consensus       172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~  246 (395)
T PF09295_consen  172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS  246 (395)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence            4445555556677777777777777664  33  33446666666666677777777766543 2355555556666777


Q ss_pred             CCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045498          123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM  171 (207)
Q Consensus       123 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  171 (207)
                      .++++.|.++.+++.+..+. +..+|..|..+|.+.|+++.|+..++.+
T Consensus       247 k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  247 KKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             cCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            77777777777777776322 4557777777777777777777777655

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.65  E-value=1.3e-06  Score=68.67  Aligned_cols=181  Identities=12%  Similarity=-0.040  Sum_probs=115.1

Q ss_pred             HHHHHhhhhhhhHHHHH-----HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcC
Q 045498           16 GIRINGMCKIREIDSAI-----KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG   90 (207)
Q Consensus        16 ~~ll~~~~~~g~~~~a~-----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~   90 (207)
                      ..+|.+|+..|+.++|.     ...-+|++..|..+.+......-+++|.++++....+       .-..+-....+.++
T Consensus       428 ~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~  500 (777)
T KOG1128|consen  428 DPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKD  500 (777)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchh
Confidence            33444444444444443     2223445555555555544444455555554443221       00111111223556


Q ss_pred             hhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 045498           91 RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ  170 (207)
Q Consensus        91 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  170 (207)
                      ++++.+.++.-.+.. +.-..+|...-.+..+.++++.|.+.|..-....+. +...||.+-.+|.+.++-.+|...+.+
T Consensus       501 fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~E  578 (777)
T KOG1128|consen  501 FSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKE  578 (777)
T ss_pred             HHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHH
Confidence            666666665544433 234567777777778888999999999888876433 577899999999999999999999999


Q ss_pred             HHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       171 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      ..+.+ .-+...|..-+....+.|.+++|.+.+.++
T Consensus       579 AlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl  613 (777)
T KOG1128|consen  579 ALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL  613 (777)
T ss_pred             HhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence            88877 446667777888888999999999888765

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.65  E-value=4.6e-06  Score=62.82  Aligned_cols=121  Identities=16%  Similarity=0.075  Sum_probs=99.7

Q ss_pred             HHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 045498           78 YNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK  157 (207)
Q Consensus        78 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~  157 (207)
                      -..|++.+...++++.|..+++++.+..  |+  ....++..+...++-.+|.+++.+..+... -+......-...+.+
T Consensus       172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~  246 (395)
T PF09295_consen  172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLS  246 (395)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHh
Confidence            4456677777899999999999999875  44  344577888888899999999998887633 266677777788999


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCchhHHHHHHHh
Q 045498          158 KGMIMEADKLLVQMKEKGCFPDS-TSFNTVIQGFLVKNETDRASSFLKK  205 (207)
Q Consensus       158 ~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~  205 (207)
                      .++++.|..+.+++.+.  .|+. .+|..|..+|.+.|+++.|+..++-
T Consensus       247 k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs  293 (395)
T PF09295_consen  247 KKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNS  293 (395)
T ss_pred             cCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence            99999999999999886  5554 6999999999999999999988764

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.61  E-value=3.9e-05  Score=56.59  Aligned_cols=180  Identities=12%  Similarity=0.064  Sum_probs=130.2

Q ss_pred             hhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHH
Q 045498           25 IREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL   98 (207)
Q Consensus        25 ~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~   98 (207)
                      .|+|.+|+      ...-+-....|-.-..+.-+.|+.+.+-.++.+..+.--.++....-+.-......|+.+.|..-+
T Consensus        97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v  176 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV  176 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence            57777777      122222344566667778888999999999999887644556667777778888889999999999


Q ss_pred             HHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045498           99 QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV-------VTYNILINGLCKKGMIMEADKLLVQM  171 (207)
Q Consensus        99 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m  171 (207)
                      +++.+.+.. +..+......+|.+.|+|.....+...+.+.|.--+.       .+|..++.-....+..+.-...+++.
T Consensus       177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~  255 (400)
T COG3071         177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ  255 (400)
T ss_pred             HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence            998887643 6778889999999999999999999999988765443       34566666555555555555555554


Q ss_pred             HHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          172 KEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       172 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      -.. .+-++..-.+++.-+.+.|+.++|.++.++.
T Consensus       256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~  289 (400)
T COG3071         256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDA  289 (400)
T ss_pred             cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            332 3445666677777888888888888877653

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.61  E-value=1.1e-05  Score=67.92  Aligned_cols=192  Identities=13%  Similarity=0.044  Sum_probs=136.1

Q ss_pred             chhhhHHHHHhhhhhhhHHHHH------HcCCCc-----cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHH
Q 045498           11 NFHVYGIRINGMCKIREIDSAI------KKGICL-----DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYN   79 (207)
Q Consensus        11 ~~~~~~~ll~~~~~~g~~~~a~------~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~   79 (207)
                      +...|-..|......+++++|.      -..+.+     -...|.++++.-.--|.-+...++|++..+..  -...+|.
T Consensus      1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred             cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence            3457888888888889988888      122211     12457777777666777778888888887753  2235678


Q ss_pred             HHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhc
Q 045498           80 PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV-PGVVTYNILINGLCKK  158 (207)
Q Consensus        80 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~  158 (207)
                      .|...|.+.+..++|-++++.|.+.- .-...+|...+..+.+.++-+.|..++.+..+.=.+ -......-.+..-.+.
T Consensus      1535 ~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence            88888888888889999998887652 246678888888888888888888888877665211 1233444455555677


Q ss_pred             CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       159 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      |+.+.+..+|+...... +--...|+..++.=.++|+.+.++.+|++.
T Consensus      1614 GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred             CCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence            88888888888877652 223456888888888888888888888764

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.61  E-value=4.6e-05  Score=53.50  Aligned_cols=153  Identities=14%  Similarity=0.005  Sum_probs=94.3

Q ss_pred             HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHH
Q 045498           33 KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV  112 (207)
Q Consensus        33 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~  112 (207)
                      ......+......-...|.+.+++++|++.....    .  +......=..++.+..+.+-|...+++|.+-.   +..|
T Consensus       101 ~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~t  171 (299)
T KOG3081|consen  101 DSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG----E--NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDAT  171 (299)
T ss_pred             hhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc----c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHH
Confidence            3333444344444455667777788777776551    1  12222333344566777777777777777653   4455


Q ss_pred             HHHHHHHHh----cCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 045498          113 YSLVIDGLC----RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ  188 (207)
Q Consensus       113 ~~~li~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~  188 (207)
                      .+.+..++.    -.+.+.+|.-+|++|-++ ..|+..+.+....++...|++++|..++++...... -++.+...++-
T Consensus       172 LtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dpetL~Nliv  249 (299)
T KOG3081|consen  172 LTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDPETLANLIV  249 (299)
T ss_pred             HHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCHHHHHHHHH
Confidence            554544443    345577788888887764 456777777777777888888888888887776632 35566666666


Q ss_pred             HHHhcCch
Q 045498          189 GFLVKNET  196 (207)
Q Consensus       189 ~~~~~~~~  196 (207)
                      +-...|..
T Consensus       250 ~a~~~Gkd  257 (299)
T KOG3081|consen  250 LALHLGKD  257 (299)
T ss_pred             HHHHhCCC
Confidence            55555544

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.58  E-value=8.3e-06  Score=52.42  Aligned_cols=107  Identities=19%  Similarity=0.055  Sum_probs=89.0

Q ss_pred             cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHH
Q 045498           39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID  118 (207)
Q Consensus        39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  118 (207)
                      +......+...+.+.|++++|...|+.....+ +.+...+..+...+...|++++|...++...+.+ +.+...+..+..
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~   93 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE   93 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence            34556777788889999999999999998865 5577888889999999999999999999988775 446778888888


Q ss_pred             HHhcCCCHHHHHHHHHHHHhCCCCCChhhHH
Q 045498          119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYN  149 (207)
Q Consensus       119 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~  149 (207)
                      .+...|++++|...++...+..  |+...+.
T Consensus        94 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~  122 (135)
T TIGR02552        94 CLLALGEPESALKALDLAIEIC--GENPEYS  122 (135)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhc--cccchHH
Confidence            9999999999999999998873  5544443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.55  E-value=2.1e-06  Score=52.15  Aligned_cols=76  Identities=21%  Similarity=0.320  Sum_probs=42.6

Q ss_pred             HHhhHhhhcChhhHHHHHHHHHhCCC-CccHHHHHHHHHHHhcCC--------CHHHHHHHHHHHHhCCCCCChhhHHHH
Q 045498           81 LIHDNWEKQGRFSAMALLQTLERDKY-ELNIEVYSLVIDGLCRVG--------RWEEARKKLDQLSEKGLVPGVVTYNIL  151 (207)
Q Consensus        81 ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~~l  151 (207)
                      .|..|...+++.....+|..+++.|+ .|+..+|+.++.+.++..        ++-..+.+|+.|...+++|+..+|+.+
T Consensus        31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv  110 (120)
T PF08579_consen   31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV  110 (120)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence            34444444555555555555555555 555555555555544331        233455566666666666666666666


Q ss_pred             HHHHH
Q 045498          152 INGLC  156 (207)
Q Consensus       152 i~~~~  156 (207)
                      +..+.
T Consensus       111 l~~Ll  115 (120)
T PF08579_consen  111 LGSLL  115 (120)
T ss_pred             HHHHH
Confidence            66554

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.54  E-value=2.5e-05  Score=63.04  Aligned_cols=157  Identities=13%  Similarity=0.025  Sum_probs=117.6

Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCC--cchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCH
Q 045498           49 GLCTFNRLKEAVELFDKMVAQGIT--AELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW  126 (207)
Q Consensus        49 ~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~  126 (207)
                      ++.+.+..+....+...+....+.  -+...|..+..++...|++.+|..++..+......-+..+|..+..+|...|..
T Consensus       386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~  465 (895)
T KOG2076|consen  386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY  465 (895)
T ss_pred             hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence            334444444444455555555533  345678888899999999999999999998876555678999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH--------HcCCCCChhhHHHHHHHHHhcCchhH
Q 045498          127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK--------EKGCFPDSTSFNTVIQGFLVKNETDR  198 (207)
Q Consensus       127 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~--------~~~~~p~~~~~~~l~~~~~~~~~~~~  198 (207)
                      +.|.+.|+......+. +...-..|...+-+.|+.++|.+.+..+.        ..+..|+..........+.+.|+.++
T Consensus       466 e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~  544 (895)
T KOG2076|consen  466 EEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE  544 (895)
T ss_pred             HHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence            9999999999887433 56666777888899999999999999853        23456666667777777888888887


Q ss_pred             HHHHHHhh
Q 045498          199 ASSFLKKN  206 (207)
Q Consensus       199 a~~~~~~m  206 (207)
                      -...-.+|
T Consensus       545 fi~t~~~L  552 (895)
T KOG2076|consen  545 FINTASTL  552 (895)
T ss_pred             HHHHHHHH
Confidence            65554443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.52  E-value=3.9e-05  Score=60.07  Aligned_cols=162  Identities=16%  Similarity=0.091  Sum_probs=123.4

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhC--------------CCCcch--hhHHHHHhhHhhhcChhhHHHHHHHHHhCC
Q 045498           42 VYSSLINGLCTFNRLKEAVELFDKMVAQ--------------GITAEL--VTYNPLIHDNWEKQGRFSAMALLQTLERDK  105 (207)
Q Consensus        42 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~--------------~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~  105 (207)
                      +|+.+-..|....+..-..+++......              .-+|+.  .++..+-..|...|+.++|+..+++..+..
T Consensus       145 lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht  224 (517)
T PF12569_consen  145 LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT  224 (517)
T ss_pred             HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence            4666666666555666666666665432              113444  345666788889999999999999988874


Q ss_pred             CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh---
Q 045498          106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS---  182 (207)
Q Consensus       106 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---  182 (207)
                       +..+..|..-.+.+-+.|++++|.+.++..++.... |...-+-.+..+.+.|++++|.+++...-+.+..|-...   
T Consensus       225 -Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~m  302 (517)
T PF12569_consen  225 -PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDM  302 (517)
T ss_pred             -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHH
Confidence             224778888899999999999999999999998765 788888889999999999999999999987765443322   


Q ss_pred             ---H--HHHHHHHHhcCchhHHHHHHHh
Q 045498          183 ---F--NTVIQGFLVKNETDRASSFLKK  205 (207)
Q Consensus       183 ---~--~~l~~~~~~~~~~~~a~~~~~~  205 (207)
                         |  .....+|.+.|++..|++.|..
T Consensus       303 Qc~Wf~~e~a~a~~r~~~~~~ALk~~~~  330 (517)
T PF12569_consen  303 QCMWFETECAEAYLRQGDYGLALKRFHA  330 (517)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence               2  3456688999999999887764

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.52  E-value=1.5e-07  Score=44.05  Aligned_cols=30  Identities=47%  Similarity=0.946  Sum_probs=22.3

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 045498           42 VYSSLINGLCTFNRLKEAVELFDKMVAQGI   71 (207)
Q Consensus        42 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~   71 (207)
                      +|+++|++|++.|++++|.++|++|.+.|+
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            677777777777777777777777777653

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.51  E-value=2.7e-05  Score=50.78  Aligned_cols=128  Identities=14%  Similarity=0.108  Sum_probs=95.9

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcch---hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccH--HHHH
Q 045498           40 VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL---VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI--EVYS  114 (207)
Q Consensus        40 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~  114 (207)
                      ...|..++..+ ..++...+...++.+.+.. +.+.   ...-.+-..+...|++++|...|+........|+.  ....
T Consensus        12 ~~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l   89 (145)
T PF09976_consen   12 SALYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL   89 (145)
T ss_pred             HHHHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence            45677777777 4889999999999998864 2231   22333447788899999999999999887633332  3445


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045498          115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM  171 (207)
Q Consensus       115 ~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  171 (207)
                      .+...+...|++++|...++......  .....+...-..|.+.|++++|...|+..
T Consensus        90 ~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   90 RLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            56788899999999999997754432  34456667789999999999999999863

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.51  E-value=0.0001  Score=55.94  Aligned_cols=118  Identities=19%  Similarity=0.092  Sum_probs=76.6

Q ss_pred             hHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHH
Q 045498           84 DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG-VVTYNILINGLCKKGMIM  162 (207)
Q Consensus        84 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~~~~~  162 (207)
                      .....|+.++|+..++.+.+.- +-|..........+.+.|+.++|.+.++.+...  .|+ ....-.+..++.+.|++.
T Consensus       315 ~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~  391 (484)
T COG4783         315 QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ  391 (484)
T ss_pred             HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence            4455677777777777766552 224444445566777777777777777777766  344 444555667777777777


Q ss_pred             HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498          163 EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK  205 (207)
Q Consensus       163 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  205 (207)
                      +|..++++.... .+-|+..|..|.++|...|+..++..-..|
T Consensus       392 eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE  433 (484)
T COG4783         392 EAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAE  433 (484)
T ss_pred             HHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence            777777776655 344667777777777777777666654443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.50  E-value=5.3e-05  Score=52.83  Aligned_cols=170  Identities=12%  Similarity=0.074  Sum_probs=115.7

Q ss_pred             HcC-CCccHHh-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccH
Q 045498           33 KKG-ICLDVFV-YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI  110 (207)
Q Consensus        33 ~~~-~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~  110 (207)
                      ..| ..++.++ |..++-+....++.+.|..+++++..+- +-+..+-..--..+-..|++++|.++++.+.+.+ +.|.
T Consensus        43 k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~  120 (289)
T KOG3060|consen   43 KSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDT  120 (289)
T ss_pred             hhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchh
Confidence            344 5566544 6677777888899999999999887663 3333332222223456788899999999988876 4466


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 045498          111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF  190 (207)
Q Consensus       111 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~  190 (207)
                      .++--=+...-..|+--+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-.. +.++..+..+...+
T Consensus       121 v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~  198 (289)
T KOG3060|consen  121 VIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVL  198 (289)
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHH
Confidence            66766666666677766777776666655 34588899999999999999999999999887651 33555566666654


Q ss_pred             HhcC---chhHHHHHHHhh
Q 045498          191 LVKN---ETDRASSFLKKN  206 (207)
Q Consensus       191 ~~~~---~~~~a~~~~~~m  206 (207)
                      --.|   +.+-+.+++.+.
T Consensus       199 Yt~gg~eN~~~arkyy~~a  217 (289)
T KOG3060|consen  199 YTQGGAENLELARKYYERA  217 (289)
T ss_pred             HHHhhHHHHHHHHHHHHHH
Confidence            3333   445566666543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.49  E-value=0.00018  Score=54.04  Aligned_cols=164  Identities=11%  Similarity=-0.009  Sum_probs=93.7

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCC-Ccc--HHHHHHHHH
Q 045498           42 VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKY-ELN--IEVYSLVID  118 (207)
Q Consensus        42 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~--~~~~~~li~  118 (207)
                      ....+...+...|++++|...+++..+.. +.+...+..+-.++...|++++|...+++...... .|+  ...|..+..
T Consensus       116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~  194 (355)
T cd05804         116 LLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL  194 (355)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence            33445556777888888888888887764 44556677777788888888888888887665432 122  234556777


Q ss_pred             HHhcCCCHHHHHHHHHHHHhCCC-CCChhhH-H--HHHHHHHhcCCHHHHHHH--HHHHHHcCC--CCChhhHHHHHHHH
Q 045498          119 GLCRVGRWEEARKKLDQLSEKGL-VPGVVTY-N--ILINGLCKKGMIMEADKL--LVQMKEKGC--FPDSTSFNTVIQGF  190 (207)
Q Consensus       119 ~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~-~--~li~~~~~~~~~~~a~~~--~~~m~~~~~--~p~~~~~~~l~~~~  190 (207)
                      .+...|++++|..++++...... .+..... +  .++.-+...|....+...  .........  ............++
T Consensus       195 ~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~  274 (355)
T cd05804         195 FYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALAL  274 (355)
T ss_pred             HHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence            78888888888888887754322 1111111 1  223333334433333222  111111110  11112223456667


Q ss_pred             HhcCchhHHHHHHHhh
Q 045498          191 LVKNETDRASSFLKKN  206 (207)
Q Consensus       191 ~~~~~~~~a~~~~~~m  206 (207)
                      ...|+.++|.+.++.+
T Consensus       275 ~~~~~~~~a~~~L~~l  290 (355)
T cd05804         275 AGAGDKDALDKLLAAL  290 (355)
T ss_pred             hcCCCHHHHHHHHHHH
Confidence            7788888888777653

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.47  E-value=1.8e-05  Score=59.97  Aligned_cols=154  Identities=16%  Similarity=0.052  Sum_probs=125.3

Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHH
Q 045498           50 LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA  129 (207)
Q Consensus        50 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a  129 (207)
                      +.-.|+...|..-|+...+....++ ..|--+-.+|....+.++....|.+....+.. +..+|..--..+.-.+++++|
T Consensus       336 ~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A  413 (606)
T KOG0547|consen  336 HFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA  413 (606)
T ss_pred             hhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence            3346888889999999888754333 23555566788899999999999998887644 778898888888889999999


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhhC
Q 045498          130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM  207 (207)
Q Consensus       130 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~  207 (207)
                      ..=|++..+.... +...|..+..+..+.++++++...|++.++. ++--+..|+.....+...+++++|.+.|+..+
T Consensus       414 ~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai  489 (606)
T KOG0547|consen  414 IADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI  489 (606)
T ss_pred             HHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence            9999999987543 5667777777778899999999999999877 66677889999999999999999999988653

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.47  E-value=0.00018  Score=58.36  Aligned_cols=197  Identities=12%  Similarity=0.003  Sum_probs=142.2

Q ss_pred             cccchhhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHH
Q 045498            8 FKGNFHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPL   81 (207)
Q Consensus         8 ~~p~~~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l   81 (207)
                      +.|.....-...+...-.|++++|.      -.-.+.+...|.+|-..|-+.|+.+++...+-.....+ +-|...|-.+
T Consensus       135 l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~l  213 (895)
T KOG2076|consen  135 LAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRL  213 (895)
T ss_pred             cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHH
Confidence            4444444444444444459999888      23345567889999999999999999888776655443 4466778888


Q ss_pred             HhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHH----HHHHHHHh
Q 045498           82 IHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN----ILINGLCK  157 (207)
Q Consensus        82 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~li~~~~~  157 (207)
                      -......|+++.|.-.|.+..+.. +++...+.--...|-+.|+...|.+.|.++.......|..-+.    ..+..+..
T Consensus       214 adls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~  292 (895)
T KOG2076|consen  214 ADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT  292 (895)
T ss_pred             HHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH
Confidence            888888899999999999988876 4566677777888899999999999999988874322333333    33455666


Q ss_pred             cCCHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          158 KGMIMEADKLLVQMKEK-GCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       158 ~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      .++-+.|.+.++..... +-..+...++.++..|.+...++.+...+.++
T Consensus       293 ~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~  342 (895)
T KOG2076|consen  293 HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDD  342 (895)
T ss_pred             hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHH
Confidence            77778888888877652 23446677888888888888888888776543

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.47  E-value=2.2e-05  Score=57.04  Aligned_cols=141  Identities=13%  Similarity=0.180  Sum_probs=104.2

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhh-HhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHH
Q 045498           41 FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD-NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG  119 (207)
Q Consensus        41 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  119 (207)
                      .+|..+++...+.+..+.|..+|.+..+.+ ..+..+|-..... +...++.+.|..+|+...+. +..+...|...++.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence            578899999999999999999999998653 2233334333333 33356777799999998776 45678889999999


Q ss_pred             HhcCCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 045498          120 LCRVGRWEEARKKLDQLSEKGLVPGV----VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVI  187 (207)
Q Consensus       120 ~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~  187 (207)
                      +.+.|+.+.|..+|++.... + |..    ..|...+..-.+.|+++.+.++.+++.+.  -|+...+..++
T Consensus        80 l~~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~  147 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFS  147 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHH
Confidence            99999999999999999876 3 333    48999999999999999999999999876  34434444333

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=6.7e-05  Score=57.83  Aligned_cols=194  Identities=12%  Similarity=-0.033  Sum_probs=104.4

Q ss_pred             cchhhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHh
Q 045498           10 GNFHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH   83 (207)
Q Consensus        10 p~~~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~   83 (207)
                      +....+..-|.++...|+-.+..      -...+..+.+|-++-.-|...|+.++|.+.|.+....+-.-. ..|-..-+
T Consensus       276 fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fg-paWl~fgh  354 (611)
T KOG1173|consen  276 FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFG-PAWLAFGH  354 (611)
T ss_pred             CCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcccc-HHHHHHhH
Confidence            34444455555555555544433      333344555666666666666666666666665432211100 11222222


Q ss_pred             h----------------------------------HhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHH
Q 045498           84 D----------------------------------NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA  129 (207)
Q Consensus        84 ~----------------------------------~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a  129 (207)
                      +                                  |.+.++.+.|.+.|.+..... +.|+.+.+-+--.....+.+.+|
T Consensus       355 sfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A  433 (611)
T KOG1173|consen  355 SFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEA  433 (611)
T ss_pred             HhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHH
Confidence            2                                  233444445555554444332 22444555554444555666677


Q ss_pred             HHHHHHHHhC----CC-C-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHH
Q 045498          130 RKKLDQLSEK----GL-V-PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL  203 (207)
Q Consensus       130 ~~~~~~~~~~----g~-~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~  203 (207)
                      ...|+.....    +- + .-..+++.|-.+|.+.+.+++|...++..... .+-|..++.++.-.|...|.++.|...|
T Consensus       434 ~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~f  512 (611)
T KOG1173|consen  434 LKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHF  512 (611)
T ss_pred             HHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHH
Confidence            6666655411    00 0 13345667777777777777777777776665 2446677777777777777777777777


Q ss_pred             Hhh
Q 045498          204 KKN  206 (207)
Q Consensus       204 ~~m  206 (207)
                      .+.
T Consensus       513 hKa  515 (611)
T KOG1173|consen  513 HKA  515 (611)
T ss_pred             HHH
Confidence            654

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.46  E-value=3.1e-07  Score=42.92  Aligned_cols=29  Identities=48%  Similarity=0.820  Sum_probs=14.2

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045498          147 TYNILINGLCKKGMIMEADKLLVQMKEKG  175 (207)
Q Consensus       147 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~  175 (207)
                      +|+.++++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            44455555555555555555555544443

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.44  E-value=2.5e-05  Score=54.72  Aligned_cols=155  Identities=17%  Similarity=0.061  Sum_probs=116.9

Q ss_pred             hhhHHHHHhhhhhhhHHHHH---HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHh---
Q 045498           13 HVYGIRINGMCKIREIDSAI---KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNW---   86 (207)
Q Consensus        13 ~~~~~ll~~~~~~g~~~~a~---~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~---   86 (207)
                      .....-...|++.|++++|+   ..+  -+......=+..+.+..+++.|.+.+++|.+-.   +..|.+.|..++.   
T Consensus       109 i~~l~aa~i~~~~~~~deAl~~~~~~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la  183 (299)
T KOG3081|consen  109 IDLLLAAIIYMHDGDFDEALKALHLG--ENLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLA  183 (299)
T ss_pred             HHHHHhhHHhhcCCChHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHh
Confidence            33344456788999999999   333  344444445566778899999999999998764   5567776665554   


Q ss_pred             -hhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH-HHH
Q 045498           87 -EKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI-MEA  164 (207)
Q Consensus        87 -~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~-~~a  164 (207)
                       ..+...+|.-+|++|-+. .+|+..+.+....++...|++++|..+++....+..+ ++.+...++.+-...|.. +-.
T Consensus       184 ~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~  261 (299)
T KOG3081|consen  184 TGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVT  261 (299)
T ss_pred             ccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHH
Confidence             455688899999999875 4789999999999999999999999999999998766 677777676666666655 555


Q ss_pred             HHHHHHHHHc
Q 045498          165 DKLLVQMKEK  174 (207)
Q Consensus       165 ~~~~~~m~~~  174 (207)
                      .+.+.+++..
T Consensus       262 ~r~l~QLk~~  271 (299)
T KOG3081|consen  262 ERNLSQLKLS  271 (299)
T ss_pred             HHHHHHHHhc
Confidence            6677777765

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.44  E-value=0.00028  Score=55.74  Aligned_cols=161  Identities=12%  Similarity=-0.032  Sum_probs=115.3

Q ss_pred             cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHH
Q 045498           39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID  118 (207)
Q Consensus        39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  118 (207)
                      +...|......=-..|..++...+|++.... ++-....|-...+.....|+...|..++....+.... +...|-..+.
T Consensus       549 k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavK  626 (913)
T KOG0495|consen  549 KKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVK  626 (913)
T ss_pred             hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence            4445555555555567777778888887765 3455566777777777888888888888887776533 6778888888


Q ss_pred             HHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhH
Q 045498          119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR  198 (207)
Q Consensus       119 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~  198 (207)
                      ....+.+++.|..+|.+....  .|+...|.--+...--.++.++|.+++++..+. ++.-...|-.+-+.+-+.++++.
T Consensus       627 le~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~  703 (913)
T KOG0495|consen  627 LEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEM  703 (913)
T ss_pred             HhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHH
Confidence            888888888888888887775  567777776666666678888888888877765 33334556666667777777777


Q ss_pred             HHHHHH
Q 045498          199 ASSFLK  204 (207)
Q Consensus       199 a~~~~~  204 (207)
                      |.+.|.
T Consensus       704 aR~aY~  709 (913)
T KOG0495|consen  704 AREAYL  709 (913)
T ss_pred             HHHHHH
Confidence            776553

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=7.6e-05  Score=57.53  Aligned_cols=141  Identities=12%  Similarity=0.007  Sum_probs=113.6

Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhC----CC--CccHHHHHHHHHHHhc
Q 045498           49 GLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERD----KY--ELNIEVYSLVIDGLCR  122 (207)
Q Consensus        49 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~--~~~~~~~~~li~~~~~  122 (207)
                      -|.+.+.++.|.+.|.+..... |-|+...+-+--.....+.+.+|..+|+.....    +.  ..-..+++.+-.+|.+
T Consensus       389 ey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk  467 (611)
T KOG1173|consen  389 EYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK  467 (611)
T ss_pred             HHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence            4556788888888888887663 668888888888888899999999999886522    11  1134578889999999


Q ss_pred             CCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 045498          123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK  193 (207)
Q Consensus       123 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~  193 (207)
                      .+.+++|...+++......+ +..++.++.-.|...|+++.|.+.|.....  +.|+..+...++..+...
T Consensus       468 l~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  468 LNKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIED  535 (611)
T ss_pred             HhhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHHh
Confidence            99999999999999887654 889999999999999999999999997765  478887777777755443

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=98.41  E-value=1.1e-05  Score=55.01  Aligned_cols=91  Identities=15%  Similarity=0.180  Sum_probs=55.1

Q ss_pred             CCCccHHhHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhc----------------Chhh
Q 045498           35 GICLDVFVYSSLINGLCTF-----NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ----------------GRFS   93 (207)
Q Consensus        35 ~~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----------------~~~~   93 (207)
                      +-..+..+|..++..|.+.     |..+-....+..|.+-|+.-|..+|+.||+.+=+..                +-+.
T Consensus        42 ~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c  121 (228)
T PF06239_consen   42 GQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQEC  121 (228)
T ss_pred             hccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHH
Confidence            3456677777777777654     566777777777777777777777777777654311                1233


Q ss_pred             HHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC
Q 045498           94 AMALLQTLERDKYELNIEVYSLVIDGLCRVGR  125 (207)
Q Consensus        94 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~  125 (207)
                      |++++++|...|+-||..++..++..|++.+.
T Consensus       122 ~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  122 AIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence            45555555555555555555555555554443

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=98.40  E-value=2e-05  Score=53.77  Aligned_cols=102  Identities=19%  Similarity=0.207  Sum_probs=82.8

Q ss_pred             CcchhhHHHHHhhHhh-----hcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCC----------------CHHHHH
Q 045498           72 TAELVTYNPLIHDNWE-----KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG----------------RWEEAR  130 (207)
Q Consensus        72 ~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~----------------~~~~a~  130 (207)
                      ..+..+|..++..+.+     .|..+-....++.|.+.|+.-|..+|+.|++.+=+..                +-+-|.
T Consensus        44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i  123 (228)
T PF06239_consen   44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI  123 (228)
T ss_pred             cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence            4577888888888875     4677778888999999999999999999999987532                345789


Q ss_pred             HHHHHHHhCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 045498          131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMI-MEADKLLVQMKE  173 (207)
Q Consensus       131 ~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~  173 (207)
                      +++++|...|+.||..++..++..+++.+.. .+..++.-.|-+
T Consensus       124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk  167 (228)
T PF06239_consen  124 DLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK  167 (228)
T ss_pred             HHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988765 345555555543

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.39  E-value=0.00012  Score=61.97  Aligned_cols=181  Identities=14%  Similarity=0.023  Sum_probs=135.2

Q ss_pred             HHHHHhhhhhhhHHHHHH--cCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhh
Q 045498           16 GIRINGMCKIREIDSAIK--KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS   93 (207)
Q Consensus        16 ~~ll~~~~~~g~~~~a~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~   93 (207)
                      -.+-.+|.....+.+..+  ..+.-...+|..|...|.+..++++|.++++.|.+. +......|...+..+.+..+-+.
T Consensus      1504 lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~a 1582 (1710)
T KOG1070|consen 1504 LNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEA 1582 (1710)
T ss_pred             HhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHH
Confidence            334445554434444432  222333567899999999999999999999999875 23577899999999999999999


Q ss_pred             HHHHHHHHHhCCCCc-cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045498           94 AMALLQTLERDKYEL-NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK  172 (207)
Q Consensus        94 a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  172 (207)
                      |..++.+..+.-.+- ........+..-.+.|+.+.+..+|+.....-++ -...|+..+..-.+.|+.+.+..+|++..
T Consensus      1583 a~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi 1661 (1710)
T KOG1070|consen 1583 ARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVI 1661 (1710)
T ss_pred             HHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            999999977663221 3445566667778999999999999999887554 67799999999999999999999999999


Q ss_pred             HcCCCCCh--hhHHHHHHHHHhcCchhH
Q 045498          173 EKGCFPDS--TSFNTVIQGFLVKNETDR  198 (207)
Q Consensus       173 ~~~~~p~~--~~~~~l~~~~~~~~~~~~  198 (207)
                      ..++.|-.  ..|.--+..=-+.|+-..
T Consensus      1662 ~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1662 ELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred             hcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence            99877654  334444444344555443

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=0.00016  Score=54.00  Aligned_cols=197  Identities=9%  Similarity=0.022  Sum_probs=123.5

Q ss_pred             ccccccccchhhhHHHHHhhhhhhhHHHHH----------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 045498            3 LTEQRFKGNFHVYGIRINGMCKIREIDSAI----------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGIT   72 (207)
Q Consensus         3 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~----------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~   72 (207)
                      |..-.+.|...+....+.+++..-..+.+.          ....+-|++....+..++...|+..+|+..|++....+  
T Consensus       185 m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--  262 (564)
T KOG1174|consen  185 MHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--  262 (564)
T ss_pred             hhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--
Confidence            334445566666666666666543333222          56667788999999999999999999999999886543  


Q ss_pred             cch-hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 045498           73 AEL-VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL  151 (207)
Q Consensus        73 ~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l  151 (207)
                      |+. ......--.+.+.|+.+....+...+.... +-+...|-.-...+....+++.|..+.++.++.... +...|-.=
T Consensus       263 py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilK  340 (564)
T KOG1174|consen  263 PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILK  340 (564)
T ss_pred             hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhc
Confidence            222 111122223466777777777777665542 223334444444555566777777777777665332 34444444


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHH
Q 045498          152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK  204 (207)
Q Consensus       152 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~  204 (207)
                      -..+.+.++.++|.-.|+..+... +-+...|.-|+.+|...|.+.+|.-.-+
T Consensus       341 G~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An  392 (564)
T KOG1174|consen  341 GRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALAN  392 (564)
T ss_pred             cHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHH
Confidence            466667778888877777766541 2356778888888888888777765443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.35  E-value=0.00029  Score=57.71  Aligned_cols=191  Identities=10%  Similarity=0.016  Sum_probs=120.6

Q ss_pred             chhhhHHHHHhhhhhhhHHHHH---HcCC------CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcch--hhHH
Q 045498           11 NFHVYGIRINGMCKIREIDSAI---KKGI------CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL--VTYN   79 (207)
Q Consensus        11 ~~~~~~~ll~~~~~~g~~~~a~---~~~~------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~   79 (207)
                      |+...+.|-+.|.-.|++..+.   ...+      ..-+.+|--+-.+|-..|++++|...|.+..+..  ++.  ..+-
T Consensus       269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~  346 (1018)
T KOG2002|consen  269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLV  346 (1018)
T ss_pred             CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCcccccc
Confidence            4455666677777777777666   1111      1123456667777777888888888877766543  332  2344


Q ss_pred             HHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCC----CHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 045498           80 PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG----RWEEARKKLDQLSEKGLVPGVVTYNILINGL  155 (207)
Q Consensus        80 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~  155 (207)
                      -|-..+.+.|+.+.+...|+...+.. +-+..+...+-..|+..+    ..+.|..++....+.-+ -|...|-.+...+
T Consensus       347 GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~-~d~~a~l~laql~  424 (1018)
T KOG2002|consen  347 GLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTP-VDSEAWLELAQLL  424 (1018)
T ss_pred             chhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHH
Confidence            46677777888888888777776653 324455555555555543    45666666666665532 2566676666666


Q ss_pred             HhcCCHHHHHHHHHHHH----HcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          156 CKKGMIMEADKLLVQMK----EKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       156 ~~~~~~~~a~~~~~~m~----~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      -.. ++..++.+|....    ..+..+-+...+.+.......|++++|...|++.
T Consensus       425 e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A  478 (1018)
T KOG2002|consen  425 EQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSA  478 (1018)
T ss_pred             Hhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence            544 3444466665443    4555677788888888888889999888888764

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.35  E-value=2.5e-05  Score=46.11  Aligned_cols=92  Identities=16%  Similarity=0.146  Sum_probs=44.0

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcC
Q 045498           44 SSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV  123 (207)
Q Consensus        44 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  123 (207)
                      ..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|...++...+.. +.+..++..+...+...
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence            334444555555555555555554432 2222344444445555555555555555544432 11223444444455555


Q ss_pred             CCHHHHHHHHHHHH
Q 045498          124 GRWEEARKKLDQLS  137 (207)
Q Consensus       124 ~~~~~a~~~~~~~~  137 (207)
                      |+++.|...+....
T Consensus        82 ~~~~~a~~~~~~~~   95 (100)
T cd00189          82 GKYEEALEAYEKAL   95 (100)
T ss_pred             HhHHHHHHHHHHHH
Confidence            55555555554443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.34  E-value=1.8e-06  Score=50.79  Aligned_cols=81  Identities=21%  Similarity=0.184  Sum_probs=44.5

Q ss_pred             CCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHH
Q 045498          123 VGRWEEARKKLDQLSEKGLV-PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASS  201 (207)
Q Consensus       123 ~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~  201 (207)
                      .|+++.|..+++++.+.... ++...+..+..+|.+.|++++|..+++. .+.+. .+......+.+++.+.|++++|++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence            45666666666666665331 1333444456666677777777777666 22211 122344445666667777777776


Q ss_pred             HHHh
Q 045498          202 FLKK  205 (207)
Q Consensus       202 ~~~~  205 (207)
                      ++++
T Consensus        80 ~l~~   83 (84)
T PF12895_consen   80 ALEK   83 (84)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            6654

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.34  E-value=1.8e-05  Score=46.79  Aligned_cols=93  Identities=17%  Similarity=0.082  Sum_probs=49.9

Q ss_pred             HHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 045498           79 NPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK  158 (207)
Q Consensus        79 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~  158 (207)
                      ..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.++........ +...+..+...+...
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   81 (100)
T cd00189           4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHH
Confidence            334445555666666666666655443 223344555555555566666666666655554322 334555555555566


Q ss_pred             CCHHHHHHHHHHHHH
Q 045498          159 GMIMEADKLLVQMKE  173 (207)
Q Consensus       159 ~~~~~a~~~~~~m~~  173 (207)
                      |++++|...+....+
T Consensus        82 ~~~~~a~~~~~~~~~   96 (100)
T cd00189          82 GKYEEALEAYEKALE   96 (100)
T ss_pred             HhHHHHHHHHHHHHc
Confidence            666666665555443

>PLN02789 farnesyltranstransferase

Probab=98.34  E-value=0.00034  Score=51.73  Aligned_cols=148  Identities=7%  Similarity=-0.039  Sum_probs=103.3

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhc-ChhhHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 045498           42 VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ-GRFSAMALLQTLERDKYELNIEVYSLVIDGL  120 (207)
Q Consensus        42 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  120 (207)
                      ++..+-..+...++.++|+.+..+..+.. +-+..+|+..-.++...+ ..++++..++++.+...+ +..+|+..-..+
T Consensus        39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l  116 (320)
T PLN02789         39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA  116 (320)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence            34445555666778889999998888764 334445555555555556 568888888888877644 555666555455


Q ss_pred             hcCCC--HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 045498          121 CRVGR--WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK  193 (207)
Q Consensus       121 ~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~  193 (207)
                      .+.|+  .+++..+++.+.+...+ +..+|+....++.+.|+++++++.++++.+.+.. |..+|+.....+.+.
T Consensus       117 ~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~  189 (320)
T PLN02789        117 EKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRS  189 (320)
T ss_pred             HHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhc
Confidence            55555  36778888888887655 7888888888888888899999999998887644 556676666555544

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.32  E-value=0.00041  Score=54.82  Aligned_cols=131  Identities=15%  Similarity=0.056  Sum_probs=70.3

Q ss_pred             cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCC-------------
Q 045498           39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK-------------  105 (207)
Q Consensus        39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-------------  105 (207)
                      +...|-+-+..-....+++.|..+|.+....  .|+..+|.--++.-...++.++|.+++++-.+.-             
T Consensus       617 seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi  694 (913)
T KOG0495|consen  617 SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQI  694 (913)
T ss_pred             cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHH
Confidence            4445555555555556666666666555443  3444444444444444455555555554433321             


Q ss_pred             -------------------CCc-cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 045498          106 -------------------YEL-NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD  165 (207)
Q Consensus       106 -------------------~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~  165 (207)
                                         .-| .+..|-.+.+.=-+.|.+-.|..+++..+-++++ +...|-..|+.-.+.|+.+.|.
T Consensus       695 ~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~  773 (913)
T KOG0495|consen  695 EEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAE  773 (913)
T ss_pred             HHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHH
Confidence                               112 2233444444445556666666666666655544 5666667777777777777666


Q ss_pred             HHHHHHH
Q 045498          166 KLLVQMK  172 (207)
Q Consensus       166 ~~~~~m~  172 (207)
                      .+..+..
T Consensus       774 ~lmakAL  780 (913)
T KOG0495|consen  774 LLMAKAL  780 (913)
T ss_pred             HHHHHHH
Confidence            6665544

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.31  E-value=0.00014  Score=56.25  Aligned_cols=111  Identities=12%  Similarity=-0.029  Sum_probs=86.4

Q ss_pred             hHHHHHHHHH-hCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045498           93 SAMALLQTLE-RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM  171 (207)
Q Consensus        93 ~a~~~~~~m~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  171 (207)
                      .+.++|-++. ..+.++|..+...|--.|--.|++++|.+.|+......+. |...||-|-..+++..+.++|...|.+.
T Consensus       412 ~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rA  490 (579)
T KOG1125|consen  412 HIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRA  490 (579)
T ss_pred             HHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHH
Confidence            3444444433 2333466777777777788889999999999999987554 7889999999999999999999999999


Q ss_pred             HHcCCCCC-hhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          172 KEKGCFPD-STSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       172 ~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      ++.  .|+ +.+...|.-+|...|.+++|.+.|=+.
T Consensus       491 LqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A  524 (579)
T KOG1125|consen  491 LQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA  524 (579)
T ss_pred             Hhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence            886  454 466777888899999999999887543

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.30  E-value=3.4e-05  Score=48.17  Aligned_cols=99  Identities=13%  Similarity=0.018  Sum_probs=76.5

Q ss_pred             hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCC--ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC--ChhhHHHH
Q 045498           76 VTYNPLIHDNWEKQGRFSAMALLQTLERDKYE--LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP--GVVTYNIL  151 (207)
Q Consensus        76 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~l  151 (207)
                      .++..+...+...|++++|...+..+.+....  .....+..+..++.+.|+++.|.+.++.+.......  ....+..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            35566777788899999999999998765321  124566778888999999999999999888763221  24567777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHc
Q 045498          152 INGLCKKGMIMEADKLLVQMKEK  174 (207)
Q Consensus       152 i~~~~~~~~~~~a~~~~~~m~~~  174 (207)
                      ..++.+.|++++|...++++.+.
T Consensus        83 ~~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        83 GMSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHH
Confidence            88888999999999999998887

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.28  E-value=0.00016  Score=59.86  Aligned_cols=126  Identities=10%  Similarity=-0.027  Sum_probs=62.9

Q ss_pred             hHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHH---
Q 045498           77 TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN---  153 (207)
Q Consensus        77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~---  153 (207)
                      .+..+..+|-+.|+.+++..+|++..+.. +-|..+.|.+...|+.. ++++|.+++.+....-+  +..-|+.+..   
T Consensus       118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i--~~kq~~~~~e~W~  193 (906)
T PRK14720        118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI--KKKQYVGIEEIWS  193 (906)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH--hhhcchHHHHHHH
Confidence            34444455555566666666666666655 22555666666666655 66666666555544311  1111111111   


Q ss_pred             HHH--hcCCHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          154 GLC--KKGMIMEADKLLVQMKEK-GCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       154 ~~~--~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      -++  ...+.+.-..+.+.+... |..--..++..+...|...++|+++..+++..
T Consensus       194 k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~i  249 (906)
T PRK14720        194 KLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKI  249 (906)
T ss_pred             HHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence            111  112222333333333322 22223345555667777888888888888764

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.26  E-value=0.00011  Score=60.69  Aligned_cols=142  Identities=9%  Similarity=-0.013  Sum_probs=95.3

Q ss_pred             hHHHHHHcCCCc-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchh-hHHHHHhhHhhhcChhhHHHH-------
Q 045498           27 EIDSAIKKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELV-TYNPLIHDNWEKQGRFSAMAL-------   97 (207)
Q Consensus        27 ~~~~a~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~-------   97 (207)
                      .|.+|--..+.| +...+..|+..+...+++++|.++.+...+.  .|+.. .|-.+-..+...++...+..+       
T Consensus        17 ~~~r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~   94 (906)
T PRK14720         17 KWTRADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLLNLIDSFS   94 (906)
T ss_pred             hhhhcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhhhhhhhcc
Confidence            333343344444 5677889999999999999999999876655  34332 222222244444444443333       


Q ss_pred             -----------HHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 045498           98 -----------LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK  166 (207)
Q Consensus        98 -----------~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~  166 (207)
                                 ...+...+  -+...+..+..+|-+.|+.+++..+|+++.+..+. |..+.|.+...|... ++++|.+
T Consensus        95 ~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~  170 (906)
T PRK14720         95 QNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAIT  170 (906)
T ss_pred             cccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHH
Confidence                       22333221  13356677788888889999999999999988744 788889999888888 8899888


Q ss_pred             HHHHHHHc
Q 045498          167 LLVQMKEK  174 (207)
Q Consensus       167 ~~~~m~~~  174 (207)
                      ++......
T Consensus       171 m~~KAV~~  178 (906)
T PRK14720        171 YLKKAIYR  178 (906)
T ss_pred             HHHHHHHH
Confidence            88877654

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.26  E-value=0.00013  Score=45.48  Aligned_cols=101  Identities=12%  Similarity=0.005  Sum_probs=77.1

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCC--ccHHHHHHH
Q 045498           41 FVYSSLINGLCTFNRLKEAVELFDKMVAQGI--TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYE--LNIEVYSLV  116 (207)
Q Consensus        41 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~l  116 (207)
                      .++..+...+.+.|++++|.+.|+++.+...  +.....+..+..++...|+++.|...++.+......  .....+..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            4566777788889999999999999876531  111345666888899999999999999988765322  124567778


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHhCCC
Q 045498          117 IDGLCRVGRWEEARKKLDQLSEKGL  141 (207)
Q Consensus       117 i~~~~~~~~~~~a~~~~~~~~~~g~  141 (207)
                      ..++.+.|++++|.+.++++.+...
T Consensus        83 ~~~~~~~~~~~~A~~~~~~~~~~~p  107 (119)
T TIGR02795        83 GMSLQELGDKEKAKATLQQVIKRYP  107 (119)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHHCc
Confidence            8888899999999999999888743

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.25  E-value=0.00019  Score=46.81  Aligned_cols=94  Identities=12%  Similarity=-0.066  Sum_probs=60.9

Q ss_pred             HHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 045498           79 NPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK  158 (207)
Q Consensus        79 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~  158 (207)
                      -.+-.-+...|++++|..+|+.+...+.. +..-|..|-.++-..|++++|...|.......+. |...+-.+..++...
T Consensus        39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~l  116 (157)
T PRK15363         39 YRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLAC  116 (157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHc
Confidence            33444456667777777777766665422 4555666666666777777777777776666543 566666667777777


Q ss_pred             CCHHHHHHHHHHHHHc
Q 045498          159 GMIMEADKLLVQMKEK  174 (207)
Q Consensus       159 ~~~~~a~~~~~~m~~~  174 (207)
                      |+.+.|.+.|+.....
T Consensus       117 G~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        117 DNVCYAIKALKAVVRI  132 (157)
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            7777777777766554

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.24  E-value=0.00015  Score=55.15  Aligned_cols=161  Identities=14%  Similarity=0.048  Sum_probs=82.6

Q ss_pred             cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHH
Q 045498           39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID  118 (207)
Q Consensus        39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  118 (207)
                      +...|-.-+.+=.+..++..|..+|++....=...| ..|--.+..=-..|+...|.++|++-.+  ..|+...|++.|+
T Consensus       106 ~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~  182 (677)
T KOG1915|consen  106 NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIK  182 (677)
T ss_pred             cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHH
Confidence            344444445555555555555555555554311111 2233333333445566666666655433  3566666666666


Q ss_pred             HHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-C-CCCChhhHHHHHHHHHhcCch
Q 045498          119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK-G-CFPDSTSFNTVIQGFLVKNET  196 (207)
Q Consensus       119 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~-~~p~~~~~~~l~~~~~~~~~~  196 (207)
                      .=.+-+.++.|..+++...-.  .|++.+|--....-.++|+...+..+|+...+. | -.-+...|.+....=.++..+
T Consensus       183 fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~  260 (677)
T KOG1915|consen  183 FELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEY  260 (677)
T ss_pred             HHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666665543  356666666666666666666666666665543 1 001122233333333344555


Q ss_pred             hHHHHHHH
Q 045498          197 DRASSFLK  204 (207)
Q Consensus       197 ~~a~~~~~  204 (207)
                      ++|.-+++
T Consensus       261 ERar~iyk  268 (677)
T KOG1915|consen  261 ERARFIYK  268 (677)
T ss_pred             HHHHHHHH
Confidence            55555554

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.23  E-value=6.4e-06  Score=48.38  Aligned_cols=79  Identities=20%  Similarity=0.073  Sum_probs=33.0

Q ss_pred             cChhhHHHHHHHHHhCCCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 045498           89 QGRFSAMALLQTLERDKYE-LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL  167 (207)
Q Consensus        89 ~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~  167 (207)
                      |+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..+++. .+.+.. +....-.+..++.+.|++++|.++
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHHH
Confidence            4445555555554444321 1223333345555555555555555544 111111 222222334455555555555555


Q ss_pred             HH
Q 045498          168 LV  169 (207)
Q Consensus       168 ~~  169 (207)
                      ++
T Consensus        81 l~   82 (84)
T PF12895_consen   81 LE   82 (84)
T ss_dssp             HH
T ss_pred             Hh
Confidence            44

>PLN02789 farnesyltranstransferase

Probab=98.22  E-value=0.00095  Score=49.42  Aligned_cols=188  Identities=11%  Similarity=0.029  Sum_probs=111.2

Q ss_pred             hhHHHHHhhhhhhhHHHHH---HcCC--Cc-cHHhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCcchhhHHHHHhhHh
Q 045498           14 VYGIRINGMCKIREIDSAI---KKGI--CL-DVFVYSSLINGLCTFN-RLKEAVELFDKMVAQGITAELVTYNPLIHDNW   86 (207)
Q Consensus        14 ~~~~ll~~~~~~g~~~~a~---~~~~--~~-~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~   86 (207)
                      +++.+-..+...+..++|+   ...+  .| +..+|+..-.++...+ ++++++..++++.+.+ +-+..+|+..-..+.
T Consensus        39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~  117 (320)
T PLN02789         39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE  117 (320)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence            3444445555566667776   2222  22 2334444444455555 5788888888887764 334455665544455


Q ss_pred             hhcCh--hhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc---CCH
Q 045498           87 EKQGR--FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK---GMI  161 (207)
Q Consensus        87 ~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~---~~~  161 (207)
                      +.+..  +++..+++++.+...+ +..+|+...-++.+.|+++++++.++++.+.++. |...|+.....+.+.   |..
T Consensus       118 ~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~  195 (320)
T PLN02789        118 KLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL  195 (320)
T ss_pred             HcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence            55542  5667777777776543 6777887777777888888888888888877655 666666665555443   222


Q ss_pred             ----HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc----CchhHHHHHHHh
Q 045498          162 ----MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK----NETDRASSFLKK  205 (207)
Q Consensus       162 ----~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~----~~~~~a~~~~~~  205 (207)
                          ++............ +-|..+|+-+...+...    +...+|.+++.+
T Consensus       196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~  246 (320)
T PLN02789        196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLE  246 (320)
T ss_pred             cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHH
Confidence                34555555555442 23556666666666552    233445555443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.22  E-value=0.00019  Score=51.50  Aligned_cols=195  Identities=14%  Similarity=0.063  Sum_probs=112.5

Q ss_pred             ccccccccchhhhHHHHHhhhhhhhHHHHH-----HcCCCc-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchh
Q 045498            3 LTEQRFKGNFHVYGIRINGMCKIREIDSAI-----KKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELV   76 (207)
Q Consensus         3 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~-----~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~   76 (207)
                      |..+|+..-.--+.+.+..+.+..+++.++     ...-.| +....+.|-.+|....++..|-..++++-..  .|...
T Consensus         1 M~~~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~   78 (459)
T KOG4340|consen    1 MAGSGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELE   78 (459)
T ss_pred             CCcccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHH
Confidence            344566655566788888888999999888     222333 7778888999999999999999999999765  34444


Q ss_pred             hHHHH-HhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 045498           77 TYNPL-IHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL  155 (207)
Q Consensus        77 ~~~~l-l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~  155 (207)
                      -|... ...+.+.+.+..|+++...|.... ..-......-....-..+++..+..++++....|   +..+.+......
T Consensus        79 qYrlY~AQSLY~A~i~ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCll  154 (459)
T KOG4340|consen   79 QYRLYQAQSLYKACIYADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLL  154 (459)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchhee
Confidence            44332 245667777888888887776431 1011111111112233455555555555554322   333333333444


Q ss_pred             HhcCCHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498          156 CKKGMIMEADKLLVQMKEK-GCFPDSTSFNTVIQGFLVKNETDRASSFLKK  205 (207)
Q Consensus       156 ~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  205 (207)
                      .+.|+++.|.+-|+...+- |..| ..+|+.-+..| +.|+++.|+++..+
T Consensus       155 ykegqyEaAvqkFqaAlqvsGyqp-llAYniALaHy-~~~qyasALk~iSE  203 (459)
T KOG4340|consen  155 YKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAHY-SSRQYASALKHISE  203 (459)
T ss_pred             eccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHH-hhhhHHHHHHHHHH
Confidence            4566666666666655543 3332 23444433333 44555566555544

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.19  E-value=0.00046  Score=52.52  Aligned_cols=121  Identities=14%  Similarity=0.017  Sum_probs=98.4

Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCcc-HHHHHHHHHHHhcCCCHHH
Q 045498           50 LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN-IEVYSLVIDGLCRVGRWEE  128 (207)
Q Consensus        50 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~  128 (207)
                      +...|++++|+..++.+.+.. |-|+..+......+.+.++.++|.+.++.+....  |+ ....-.+-.+|.+.|++.+
T Consensus       316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~e  392 (484)
T COG4783         316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQE  392 (484)
T ss_pred             HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHH
Confidence            446789999999999988763 4556666777789999999999999999998864  44 5566777899999999999


Q ss_pred             HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498          129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK  174 (207)
Q Consensus       129 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  174 (207)
                      |..++........ -|...|..|..+|...|+..++.....+....
T Consensus       393 ai~~L~~~~~~~p-~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~  437 (484)
T COG4783         393 AIRILNRYLFNDP-EDPNGWDLLAQAYAELGNRAEALLARAEGYAL  437 (484)
T ss_pred             HHHHHHHHhhcCC-CCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence            9999998887754 48899999999999998888877776665543

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.18  E-value=0.00014  Score=52.91  Aligned_cols=128  Identities=13%  Similarity=0.045  Sum_probs=96.8

Q ss_pred             hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHH-HhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 045498           76 VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG-LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING  154 (207)
Q Consensus        76 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~  154 (207)
                      .+|-.+++..-+.+..+.|..+|.+..+.+ ..+..+|...... +.-.++.+.|.++|+...+. +..+...|...+..
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence            468889999999999999999999998654 2233444444333 23356777899999998876 44578889999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          155 LCKKGMIMEADKLLVQMKEKGCFPDS---TSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       155 ~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      +...|+.+.|..+|++.... +.++.   ..|...++.=.+.|+.+.+.++.+++
T Consensus        80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~  133 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRA  133 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999999999999876 33222   48999999999999999999988765

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.17  E-value=0.00014  Score=47.35  Aligned_cols=96  Identities=11%  Similarity=-0.073  Sum_probs=82.5

Q ss_pred             cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 045498          109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ  188 (207)
Q Consensus       109 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~  188 (207)
                      +......+-.-+...|++++|..+|+.+....+. +..-|-.|--++-..|++++|...|........ -|+..+-.+..
T Consensus        34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~  111 (157)
T PRK15363         34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAE  111 (157)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHH
Confidence            3455666677788999999999999999887554 677788899999999999999999999988763 57888999999


Q ss_pred             HHHhcCchhHHHHHHHhh
Q 045498          189 GFLVKNETDRASSFLKKN  206 (207)
Q Consensus       189 ~~~~~~~~~~a~~~~~~m  206 (207)
                      ++...|+.+.|.+.|+..
T Consensus       112 c~L~lG~~~~A~~aF~~A  129 (157)
T PRK15363        112 CYLACDNVCYAIKALKAV  129 (157)
T ss_pred             HHHHcCCHHHHHHHHHHH
Confidence            999999999999999864

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.16  E-value=0.00061  Score=45.81  Aligned_cols=114  Identities=11%  Similarity=-0.065  Sum_probs=60.9

Q ss_pred             hHHHHHhhHhhhcChhhHHHHHHHHHhCCCCcc--HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 045498           77 TYNPLIHDNWEKQGRFSAMALLQTLERDKYELN--IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING  154 (207)
Q Consensus        77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~  154 (207)
                      .+..+...+...|++++|...+++..+....+.  ...+..+...+.+.|++++|...+++..+.... +...+..+...
T Consensus        37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~  115 (172)
T PRK02603         37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVI  115 (172)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence            344455555556666666666666554332221  245556666666666666666666666654322 34444455555


Q ss_pred             HHhcCC--------------HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCc
Q 045498          155 LCKKGM--------------IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE  195 (207)
Q Consensus       155 ~~~~~~--------------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~  195 (207)
                      +...|+              +++|.+++++....    ++..+..++..+...|+
T Consensus       116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~----~p~~~~~~~~~~~~~~~  166 (172)
T PRK02603        116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL----APNNYIEAQNWLKTTGR  166 (172)
T ss_pred             HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh----CchhHHHHHHHHHhcCc
Confidence            555444              45555666555543    33335556666555543

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=0.00075  Score=50.62  Aligned_cols=158  Identities=20%  Similarity=0.103  Sum_probs=108.8

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHH-HHHh
Q 045498           43 YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI-DGLC  121 (207)
Q Consensus        43 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li-~~~~  121 (207)
                      |-.--..+...+++++|.-.|+...... |-+...|.-|+.+|...|.+.+|..+-++..+. ++-+..+...+- ..+.
T Consensus       337 lilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~  414 (564)
T KOG1174|consen  337 LILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLF  414 (564)
T ss_pred             HHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeec
Confidence            3333445667788888888888776653 346678888888888888888876666554332 122334444331 2222


Q ss_pred             c-CCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHH
Q 045498          122 R-VGRWEEARKKLDQLSEKGLVPG-VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA  199 (207)
Q Consensus       122 ~-~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a  199 (207)
                      - -..-++|.++++.-...  .|+ ....+.+...+...|..+.+..++++....  .||....+.|.+.+...+.+.+|
T Consensus       415 ~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~a  490 (564)
T KOG1174|consen  415 PDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKA  490 (564)
T ss_pred             cCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHH
Confidence            1 22236777777766654  344 456677778888999999999999987765  68999999999999999999999


Q ss_pred             HHHHHhh
Q 045498          200 SSFLKKN  206 (207)
Q Consensus       200 ~~~~~~m  206 (207)
                      ++.|...
T Consensus       491 m~~y~~A  497 (564)
T KOG1174|consen  491 MEYYYKA  497 (564)
T ss_pred             HHHHHHH
Confidence            9888754

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.14  E-value=0.00016  Score=54.42  Aligned_cols=92  Identities=11%  Similarity=0.047  Sum_probs=66.8

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCH
Q 045498           47 INGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW  126 (207)
Q Consensus        47 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~  126 (207)
                      ...+...|++++|+..|++..+.. +-+...|..+..++...|++++|+..+++..+.. +.+...|..+..+|...|++
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~   86 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY   86 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence            344556788888888888887764 3455667777777778888888888888877764 23566677777777888888


Q ss_pred             HHHHHHHHHHHhCC
Q 045498          127 EEARKKLDQLSEKG  140 (207)
Q Consensus       127 ~~a~~~~~~~~~~g  140 (207)
                      ++|...|++..+..
T Consensus        87 ~eA~~~~~~al~l~  100 (356)
T PLN03088         87 QTAKAALEKGASLA  100 (356)
T ss_pred             HHHHHHHHHHHHhC
Confidence            88888888777753

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.14  E-value=0.0002  Score=47.92  Aligned_cols=96  Identities=13%  Similarity=-0.117  Sum_probs=65.9

Q ss_pred             hhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCc--cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 045498           75 LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL--NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI  152 (207)
Q Consensus        75 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li  152 (207)
                      ...|..+...+...|++++|...+++.......+  ...++..+-..+...|++++|.+.++...+.... ...++..+.
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la  113 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMA  113 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHH
Confidence            3456666677777888888888888876553222  2347777888888888888888888888765322 345566666


Q ss_pred             HHHH-------hcCCHHHHHHHHHHH
Q 045498          153 NGLC-------KKGMIMEADKLLVQM  171 (207)
Q Consensus       153 ~~~~-------~~~~~~~a~~~~~~m  171 (207)
                      ..+.       ..|+++.|...+++.
T Consensus       114 ~i~~~~~~~~~~~g~~~~A~~~~~~a  139 (168)
T CHL00033        114 VICHYRGEQAIEQGDSEIAEAWFDQA  139 (168)
T ss_pred             HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence            6666       777877666666544

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.13  E-value=0.0011  Score=46.53  Aligned_cols=164  Identities=14%  Similarity=0.071  Sum_probs=105.5

Q ss_pred             cccchh-hhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHH
Q 045498            8 FKGNFH-VYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNP   80 (207)
Q Consensus         8 ~~p~~~-~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~   80 (207)
                      ..|+.. .|.-+.-+....|+.+.|.      ...++-+..+-..-.-.+-..|++++|+++++.+.+.+ |.|.+++--
T Consensus        47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KR  125 (289)
T KOG3060|consen   47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKR  125 (289)
T ss_pred             cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHH
Confidence            445553 4555555666667777666      33332222221111112234688888888888888776 666777776


Q ss_pred             HHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-
Q 045498           81 LIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG-  159 (207)
Q Consensus        81 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~-  159 (207)
                      =+-+.-..|+.-+|++-+....+. +..|...|.-+-..|...|++++|.-.++++.-..+. +...+..+...+.-.| 
T Consensus       126 KlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~-n~l~f~rlae~~Yt~gg  203 (289)
T KOG3060|consen  126 KLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF-NPLYFQRLAEVLYTQGG  203 (289)
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhh
Confidence            666666777777777777776655 4558888888888888888888888888888776322 4444455555544333 


Q ss_pred             --CHHHHHHHHHHHHHc
Q 045498          160 --MIMEADKLLVQMKEK  174 (207)
Q Consensus       160 --~~~~a~~~~~~m~~~  174 (207)
                        +.+-+.+.|.+..+.
T Consensus       204 ~eN~~~arkyy~~alkl  220 (289)
T KOG3060|consen  204 AENLELARKYYERALKL  220 (289)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence              556677777777765

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.12  E-value=0.00043  Score=46.55  Aligned_cols=86  Identities=9%  Similarity=-0.058  Sum_probs=67.3

Q ss_pred             cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc--hhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHH
Q 045498           39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAE--LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV  116 (207)
Q Consensus        39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  116 (207)
                      ....+..+...+...|++++|...|++..+....+.  ...+..+..++.+.|++++|...+.+..+... -+...+..+
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l  112 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNI  112 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHH
Confidence            455678888888999999999999999986543222  35788888999999999999999999887642 245666677


Q ss_pred             HHHHhcCCC
Q 045498          117 IDGLCRVGR  125 (207)
Q Consensus       117 i~~~~~~~~  125 (207)
                      ...+...|+
T Consensus       113 g~~~~~~g~  121 (172)
T PRK02603        113 AVIYHKRGE  121 (172)
T ss_pred             HHHHHHcCC
Confidence            777777766

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.08  E-value=0.0002  Score=53.87  Aligned_cols=90  Identities=14%  Similarity=0.009  Sum_probs=67.0

Q ss_pred             hhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 045498           83 HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM  162 (207)
Q Consensus        83 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~  162 (207)
                      ..+...|++++|...|++..+... -+...|..+..+|.+.|++++|...+++..+.... +...|..+..+|.+.|+++
T Consensus        10 ~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~   87 (356)
T PLN03088         10 KEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQ   87 (356)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHH
Confidence            445567788888888888777653 35667777777888888888888888888776433 5667777777888888888


Q ss_pred             HHHHHHHHHHHc
Q 045498          163 EADKLLVQMKEK  174 (207)
Q Consensus       163 ~a~~~~~~m~~~  174 (207)
                      +|...|++..+.
T Consensus        88 eA~~~~~~al~l   99 (356)
T PLN03088         88 TAKAALEKGASL   99 (356)
T ss_pred             HHHHHHHHHHHh
Confidence            888888887765

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.07  E-value=0.0017  Score=49.71  Aligned_cols=148  Identities=10%  Similarity=0.023  Sum_probs=87.8

Q ss_pred             hcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHH
Q 045498           52 TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK  131 (207)
Q Consensus        52 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  131 (207)
                      ..+++..|..+|++..... ..+...|--.+..=.++.....|..++++....-.. -...|.-.+-.=-..|++..|.+
T Consensus        85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-VdqlWyKY~ymEE~LgNi~gaRq  162 (677)
T KOG1915|consen   85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-VDQLWYKYIYMEEMLGNIAGARQ  162 (677)
T ss_pred             hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-HHHHHHHHHHHHHHhcccHHHHH
Confidence            4455666666666666543 234444545555555666666666666665554222 22344444445555666666666


Q ss_pred             HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498          132 KLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK  205 (207)
Q Consensus       132 ~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  205 (207)
                      +|+.-.+.  .|+...|.+.|..-.+-..++.|..++++..-.  .|++.+|---.+.=.+.|.+..|..+++.
T Consensus       163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~Vyer  232 (677)
T KOG1915|consen  163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYER  232 (677)
T ss_pred             HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            66666554  566666666666666666666666666666543  46666666666666666666666666654

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.05  E-value=0.0018  Score=46.06  Aligned_cols=163  Identities=12%  Similarity=0.027  Sum_probs=109.9

Q ss_pred             cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhH---HHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHH
Q 045498           39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTY---NPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL  115 (207)
Q Consensus        39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~  115 (207)
                      ++..+-.....+.+.|++++|.+.|+++.... +-+...-   -.+..++.+.+++++|...+++..+....-....+..
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            33334344555567999999999999998864 2223332   3456788999999999999999887754333334433


Q ss_pred             HHHHHhc--C---------------CC---HHHHHHHHHHHHhCCCCCChhh------------------HHHHHHHHHh
Q 045498          116 VIDGLCR--V---------------GR---WEEARKKLDQLSEKGLVPGVVT------------------YNILINGLCK  157 (207)
Q Consensus       116 li~~~~~--~---------------~~---~~~a~~~~~~~~~~g~~~~~~~------------------~~~li~~~~~  157 (207)
                      .+.+.+.  .               .+   ...|.+.|+.+.+.  -|+..-                  --.+...|.+
T Consensus       110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~  187 (243)
T PRK10866        110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTK  187 (243)
T ss_pred             HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3433321  1               12   34566777777665  233211                  1234466888


Q ss_pred             cCCHHHHHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCchhHHHHHHH
Q 045498          158 KGMIMEADKLLVQMKEK--GCFPDSTSFNTVIQGFLVKNETDRASSFLK  204 (207)
Q Consensus       158 ~~~~~~a~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~  204 (207)
                      .|.+..|..-++.+.+.  +.+....+...++.+|...|..++|..+..
T Consensus       188 ~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~  236 (243)
T PRK10866        188 RGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK  236 (243)
T ss_pred             cCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            99999999999999876  344466778889999999999999988664

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.04  E-value=0.0013  Score=51.95  Aligned_cols=146  Identities=11%  Similarity=0.088  Sum_probs=101.9

Q ss_pred             HcCCCccHHhHHHHHHHHHhcC-----ChhHHHHHHHHHHhCCCCcc-hhhHHHHHhhHhhhc--------ChhhHHHHH
Q 045498           33 KKGICLDVFVYSSLINGLCTFN-----RLKEAVELFDKMVAQGITAE-LVTYNPLIHDNWEKQ--------GRFSAMALL   98 (207)
Q Consensus        33 ~~~~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~--------~~~~a~~~~   98 (207)
                      ....+.|...|...+.+.....     +...|..+|++..+..  |+ ...|..+..++....        +...+.+..
T Consensus       330 ~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~  407 (517)
T PRK10153        330 QQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL  407 (517)
T ss_pred             hccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            5666778899999999865533     3778999999998874  44 334444433332221        122333333


Q ss_pred             HHHHhC-CCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 045498           99 QTLERD-KYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF  177 (207)
Q Consensus        99 ~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  177 (207)
                      .+.... ....+...|.++.-.....|++++|...+++..+.+  |+...|..+...+...|+.++|...+++....  .
T Consensus       408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~  483 (517)
T PRK10153        408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--R  483 (517)
T ss_pred             HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence            332222 123355677777666667899999999999999985  68889999999999999999999999998775  5


Q ss_pred             CChhhHH
Q 045498          178 PDSTSFN  184 (207)
Q Consensus       178 p~~~~~~  184 (207)
                      |...+|.
T Consensus       484 P~~pt~~  490 (517)
T PRK10153        484 PGENTLY  490 (517)
T ss_pred             CCCchHH
Confidence            5555543

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.01  E-value=0.00096  Score=52.03  Aligned_cols=170  Identities=14%  Similarity=0.120  Sum_probs=87.6

Q ss_pred             HHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHh--hHhhhcC
Q 045498           19 INGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH--DNWEKQG   90 (207)
Q Consensus        19 l~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~--~~~~~~~   90 (207)
                      ++.+.+.|++++|.      -.+.+-+...+..-+-+..+.++|++|+.+.+.-...  ..+ ..|. +=+  +..+.+.
T Consensus        19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~-~~~~-fEKAYc~Yrlnk   94 (652)
T KOG2376|consen   19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVI-NSFF-FEKAYCEYRLNK   94 (652)
T ss_pred             HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhc-chhh-HHHHHHHHHccc
Confidence            45555667777776      2333445566666666777777777777444332110  001 1110 223  3345667


Q ss_pred             hhhHHHHHHHHHhCCCCc-cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCCHHHHHHHH
Q 045498           91 RFSAMALLQTLERDKYEL-NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK-KGMIMEADKLL  168 (207)
Q Consensus        91 ~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~~~~~~a~~~~  168 (207)
                      .++|+..++     |..+ +..+...-...+-+.|++++|.++|+.+.+.+..    .+...+.+=+. .+---.+    
T Consensus        95 ~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d----d~d~~~r~nl~a~~a~l~~----  161 (652)
T KOG2376|consen   95 LDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD----DQDEERRANLLAVAAALQV----  161 (652)
T ss_pred             HHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHHHhhhH----
Confidence            777777666     2222 2334555556667777777777777777665332    22222221110 0000011    


Q ss_pred             HHHHHcCCCCChhhHHHHH---HHHHhcCchhHHHHHHHhh
Q 045498          169 VQMKEKGCFPDSTSFNTVI---QGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       169 ~~m~~~~~~p~~~~~~~l~---~~~~~~~~~~~a~~~~~~m  206 (207)
                      +.+......| ..+|..+.   ..+...|++.+|+++++..
T Consensus       162 ~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA  201 (652)
T KOG2376|consen  162 QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKA  201 (652)
T ss_pred             HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            1122222233 23454444   4556789999999998764

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.99  E-value=0.00033  Score=55.77  Aligned_cols=182  Identities=12%  Similarity=0.045  Sum_probs=140.7

Q ss_pred             cccchhhhHHHHHhhhhhhhHHHHHHcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhh
Q 045498            8 FKGNFHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE   87 (207)
Q Consensus         8 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~   87 (207)
                      -+||+..|..+.+......-+++|.+-+-..+...-..+-....+.++++++.+.|+.-.+.+ +....+|-.+--+..+
T Consensus       453 k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALq  531 (777)
T KOG1128|consen  453 KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQ  531 (777)
T ss_pred             CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHH
Confidence            368889999999999888889999855444444433333334445799999999999887764 4566788888888889


Q ss_pred             hcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 045498           88 KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL  167 (207)
Q Consensus        88 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~  167 (207)
                      .+++..+...|..-.... +-+...||.+-.+|.+.++..+|...+.+..+.+. -+...|...+......|.+++|.+.
T Consensus       532 lek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A  609 (777)
T KOG1128|consen  532 LEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKA  609 (777)
T ss_pred             HhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHH
Confidence            999999999998877653 22567899999999999999999999999998874 4777888888888999999999999


Q ss_pred             HHHHHHcC-CCCChhhHHHHHHHHHh
Q 045498          168 LVQMKEKG-CFPDSTSFNTVIQGFLV  192 (207)
Q Consensus       168 ~~~m~~~~-~~p~~~~~~~l~~~~~~  192 (207)
                      +.++.+.. ..-|......++....+
T Consensus       610 ~~rll~~~~~~~d~~vl~~iv~~~~~  635 (777)
T KOG1128|consen  610 YHRLLDLRKKYKDDEVLLIIVRTVLE  635 (777)
T ss_pred             HHHHHHhhhhcccchhhHHHHHHHHh
Confidence            99887542 11255555555555443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.98  E-value=4.9e-05  Score=42.53  Aligned_cols=52  Identities=21%  Similarity=0.288  Sum_probs=29.5

Q ss_pred             cCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498          122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK  174 (207)
Q Consensus       122 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  174 (207)
                      +.|++++|.+.++.+...... +......+..+|.+.|++++|..+++.+...
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            455666666666666555332 4555555666666666666666666665554

...

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.92  E-value=0.0048  Score=47.95  Aligned_cols=147  Identities=14%  Similarity=0.121  Sum_probs=104.3

Q ss_pred             hhHHHHHHHHHHhC-CCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCc-cHHHHHHHHHHHhcCCCHHHHHHHH
Q 045498           56 LKEAVELFDKMVAQ-GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL-NIEVYSLVIDGLCRVGRWEEARKKL  133 (207)
Q Consensus        56 ~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~  133 (207)
                      .+.....++++... ...|+ -+|-.+|+...+......|..+|.+..+.+..+ ++.+.++++..+| .++.+-|.++|
T Consensus       347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF  424 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF  424 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence            45555666666543 33444 567778888888888888888888888877666 6777778887777 45668888888


Q ss_pred             HHHHhCCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          134 DQLSEKGLVPGVVTY-NILINGLCKKGMIMEADKLLVQMKEKGCFPDS--TSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       134 ~~~~~~g~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      +.=.+.  -+|...| ...+..+...++-..+..+|++....++.|+.  ..|..++.-=..-|+...+.++-+++
T Consensus       425 eLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~  498 (656)
T KOG1914|consen  425 ELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR  498 (656)
T ss_pred             HHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            754443  2343333 46677777888888888888888877655544  67888888888888888887776654

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.90  E-value=0.0018  Score=47.28  Aligned_cols=162  Identities=15%  Similarity=0.098  Sum_probs=94.1

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCcc-hhhHHHHHhhHhhhcChhhHHHHHHHHHh----CCCCcc--
Q 045498           41 FVYSSLINGLCTFNRLKEAVELFDKMVA----QGITAE-LVTYNPLIHDNWEKQGRFSAMALLQTLER----DKYELN--  109 (207)
Q Consensus        41 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~~~--  109 (207)
                      ..|....+.|...+++++|...|.+...    .+-+.+ ...|.....++. ..++++|...+++..+    .| .|+  
T Consensus        36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k-~~~~~~Ai~~~~~A~~~y~~~G-~~~~a  113 (282)
T PF14938_consen   36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK-KGDPDEAIECYEKAIEIYREAG-RFSQA  113 (282)
T ss_dssp             HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHCT--HHHH
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHhcC-cHHHH
Confidence            4566677777777888888888777642    221111 123444444443 3477777777766542    23 222  


Q ss_pred             HHHHHHHHHHHhcC-CCHHHHHHHHHHHHhC----CCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----
Q 045498          110 IEVYSLVIDGLCRV-GRWEEARKKLDQLSEK----GLVPG--VVTYNILINGLCKKGMIMEADKLLVQMKEKGCF-----  177 (207)
Q Consensus       110 ~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~----g~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-----  177 (207)
                      ...+..+...|-.. |+++.|.+.|++..+.    | .+.  ...+..+...+.+.|++++|.++|++....-..     
T Consensus       114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~  192 (282)
T PF14938_consen  114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLK  192 (282)
T ss_dssp             HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTG
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccc
Confidence            34666677777777 8888888888766432    2 111  345667777888888888888888887764322     


Q ss_pred             CChh-hHHHHHHHHHhcCchhHHHHHHHh
Q 045498          178 PDST-SFNTVIQGFLVKNETDRASSFLKK  205 (207)
Q Consensus       178 p~~~-~~~~l~~~~~~~~~~~~a~~~~~~  205 (207)
                      ++.. .|...+-++...||.-.|.+.+++
T Consensus       193 ~~~~~~~l~a~l~~L~~~D~v~A~~~~~~  221 (282)
T PF14938_consen  193 YSAKEYFLKAILCHLAMGDYVAARKALER  221 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            1221 233344456667888888777765

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.90  E-value=0.00093  Score=44.71  Aligned_cols=112  Identities=12%  Similarity=-0.006  Sum_probs=78.1

Q ss_pred             hHHHHHHHHH-hCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 045498           93 SAMALLQTLE-RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP--GVVTYNILINGLCKKGMIMEADKLLV  169 (207)
Q Consensus        93 ~a~~~~~~m~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~~~~~~a~~~~~  169 (207)
                      .+...+..+. ..+..-....+..+...+...|++++|...++........+  ...++..+...+...|++++|...++
T Consensus        17 ~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~   96 (168)
T CHL00033         17 IVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYF   96 (168)
T ss_pred             cchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3444444442 22222235567777888888999999999999998664332  23578889999999999999999999


Q ss_pred             HHHHcCCCCChhhHHHHHHHHH-------hcCchhHHHHHHHh
Q 045498          170 QMKEKGCFPDSTSFNTVIQGFL-------VKNETDRASSFLKK  205 (207)
Q Consensus       170 ~m~~~~~~p~~~~~~~l~~~~~-------~~~~~~~a~~~~~~  205 (207)
                      ...... +....++..+...+.       ..|+++.|...+++
T Consensus        97 ~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~  138 (168)
T CHL00033         97 QALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ  138 (168)
T ss_pred             HHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence            988752 233455666666666       77888766655543

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.85  E-value=0.0031  Score=49.89  Aligned_cols=134  Identities=12%  Similarity=0.011  Sum_probs=94.6

Q ss_pred             CCCcchhhHHHHHhhHhhhc-----ChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcC--------CCHHHHHHHHHHH
Q 045498           70 GITAELVTYNPLIHDNWEKQ-----GRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV--------GRWEEARKKLDQL  136 (207)
Q Consensus        70 ~~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------~~~~~a~~~~~~~  136 (207)
                      +.+.+...|...+.+.....     +...|..+|++..+.... ....+..+..++...        .++..+.+..+..
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a  410 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI  410 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence            44667789999998865533     356799999999887532 344444443333221        1234444555544


Q ss_pred             HhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          137 SEKG-LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       137 ~~~g-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      .... ...+...|.++.-.....|++++|...+++..+.+  |+...|..+.+.+...|+.++|.+.+++.
T Consensus       411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A  479 (517)
T PRK10153        411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTA  479 (517)
T ss_pred             hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3321 23345678877777777899999999999999874  78899999999999999999999999875

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=97.85  E-value=0.0011  Score=41.93  Aligned_cols=50  Identities=16%  Similarity=0.105  Sum_probs=33.5

Q ss_pred             CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCChhhHHHHHHHH
Q 045498          141 LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK-GCFPDSTSFNTVIQGF  190 (207)
Q Consensus       141 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~  190 (207)
                      ..|+..+..+++.+|+..|++..|.++.+...+. +++.+...|..|++-.
T Consensus        48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~   98 (126)
T PF12921_consen   48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA   98 (126)
T ss_pred             CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            4566777777777777777777777777766543 5555666777777644

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.84  E-value=0.00022  Score=39.45  Aligned_cols=56  Identities=20%  Similarity=0.163  Sum_probs=32.7

Q ss_pred             HHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498          118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK  174 (207)
Q Consensus       118 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  174 (207)
                      ..+.+.|++++|.+.|++..+.... +...+..+..++.+.|++++|...|+++.+.
T Consensus         5 ~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    5 RALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4455666666666666666665422 4555556666666666666666666666543

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.83  E-value=0.00061  Score=49.02  Aligned_cols=164  Identities=14%  Similarity=0.097  Sum_probs=107.6

Q ss_pred             cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCC-----------
Q 045498           39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYE-----------  107 (207)
Q Consensus        39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-----------  107 (207)
                      +..+.+..-....+.|+++.|.+-|+...+.+--.+...|+..+ +..+.++.+.|++...++.++|++           
T Consensus       143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~t  221 (459)
T KOG4340|consen  143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTT  221 (459)
T ss_pred             ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCcccee
Confidence            34444455555668899999999999987654344557888777 556678899999999999888742           


Q ss_pred             --ccH---------------HHHHHHHHHHhcCCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 045498          108 --LNI---------------EVYSLVIDGLCRVGRWEEARKKLDQLSEK-GLVPGVVTYNILINGLCKKGMIMEADKLLV  169 (207)
Q Consensus       108 --~~~---------------~~~~~li~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~~~~~~a~~~~~  169 (207)
                        ||+               ..+|.-...+.+.++++.|.+.+-.|.-. ....|++|...+.-.=. .+++.+...-+.
T Consensus       222 egiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLq  300 (459)
T KOG4340|consen  222 EGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQ  300 (459)
T ss_pred             ccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHH
Confidence              121               12333334456778888898888887643 23456677666543322 344544444444


Q ss_pred             HHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498          170 QMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK  205 (207)
Q Consensus       170 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  205 (207)
                      -+...+ +....||..++..||+..-++-|..++-+
T Consensus       301 FLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAE  335 (459)
T KOG4340|consen  301 FLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAE  335 (459)
T ss_pred             HHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence            455442 23457888888888988888888777643

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.82  E-value=0.0044  Score=43.98  Aligned_cols=133  Identities=16%  Similarity=0.043  Sum_probs=101.7

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHH---
Q 045498           41 FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI---  117 (207)
Q Consensus        41 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li---  117 (207)
                      .+.+.++..+.-.+.+.-...++.+..+..-+.++.....|.+.-.+.|+.+.|...|++..+..-..+..+++.++   
T Consensus       178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n  257 (366)
T KOG2796|consen  178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN  257 (366)
T ss_pred             HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence            34456677777788999999999999998777888999999999999999999999999877654444544444443   


Q ss_pred             --HHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498          118 --DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK  174 (207)
Q Consensus       118 --~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  174 (207)
                        ..|.-.+++..|...+.+....... |...-|.=.-+..-.|+..+|.+.++.|...
T Consensus       258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~  315 (366)
T KOG2796|consen  258 SAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ  315 (366)
T ss_pred             hhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence              4455677888899999888876533 5555555444555578999999999999987

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.81  E-value=0.00013  Score=40.74  Aligned_cols=52  Identities=21%  Similarity=0.295  Sum_probs=26.4

Q ss_pred             hhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 045498           87 EKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK  139 (207)
Q Consensus        87 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  139 (207)
                      ..|++++|..+|++....... +......+..+|.+.|++++|.++++.+...
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            345555555555555444322 4444445555555555555555555555544

...

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.80  E-value=0.0046  Score=48.22  Aligned_cols=164  Identities=10%  Similarity=-0.013  Sum_probs=99.5

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCc--------cHH
Q 045498           40 VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL--------NIE  111 (207)
Q Consensus        40 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--------~~~  111 (207)
                      ...|--|-..-...++-..|+..+.+-.+.. +-+....-.|--.|...|.-..|...++.-....++-        +..
T Consensus       319 aeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~  397 (579)
T KOG1125|consen  319 AEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENED  397 (579)
T ss_pred             HHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccc
Confidence            3445555555555555556666666655543 3344445555555555665556666665543332110        000


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHH-HhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 045498          112 VYSLVIDGLCRVGRWEEARKKLDQL-SEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF  190 (207)
Q Consensus       112 ~~~~li~~~~~~~~~~~a~~~~~~~-~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~  190 (207)
                      .-..  ..+.....+.+..++|-++ ...+.++|......|--.|--.|++++|.+.|+...... +-|...|+.|-..+
T Consensus       398 ~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtL  474 (579)
T KOG1125|consen  398 FENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATL  474 (579)
T ss_pred             ccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHh
Confidence            0000  1122222333444444433 334444677788888888888999999999999988752 33668899999999


Q ss_pred             HhcCchhHHHHHHHhhC
Q 045498          191 LVKNETDRASSFLKKNM  207 (207)
Q Consensus       191 ~~~~~~~~a~~~~~~m~  207 (207)
                      +...+.++|+.-|++.+
T Consensus       475 AN~~~s~EAIsAY~rAL  491 (579)
T KOG1125|consen  475 ANGNRSEEAISAYNRAL  491 (579)
T ss_pred             cCCcccHHHHHHHHHHH
Confidence            99999999999998753

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.76  E-value=0.011  Score=50.25  Aligned_cols=193  Identities=15%  Similarity=0.068  Sum_probs=121.9

Q ss_pred             hhHHHHHhhhhhhhHHHHH-----------HcCCC--c-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCc--ch
Q 045498           14 VYGIRINGMCKIREIDSAI-----------KKGIC--L-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQ--GITA--EL   75 (207)
Q Consensus        14 ~~~~ll~~~~~~g~~~~a~-----------~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~--~~   75 (207)
                      ++..+...+...|++++|.           ..+..  + ....+..+...+...|++++|...+.+....  ...+  ..
T Consensus       533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~  612 (903)
T PRK04841        533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQL  612 (903)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHH
Confidence            4455566677789888887           22221  1 2334455556677789999999998887542  1112  23


Q ss_pred             hhHHHHHhhHhhhcChhhHHHHHHHHHhCCC--CccHH--HH--HHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC---hh
Q 045498           76 VTYNPLIHDNWEKQGRFSAMALLQTLERDKY--ELNIE--VY--SLVIDGLCRVGRWEEARKKLDQLSEKGLVPG---VV  146 (207)
Q Consensus        76 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~--~~--~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~  146 (207)
                      ..+..+.......|+.++|...+.+......  .....  ..  ...+..+...|+.+.|.+.+...........   ..
T Consensus       613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~  692 (903)
T PRK04841        613 QCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQG  692 (903)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHH
Confidence            3444456677788999999998888754211  11110  10  1122445568899999988876554221111   11


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          147 TYNILINGLCKKGMIMEADKLLVQMKEK----GCFPD-STSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       147 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      .+..+..++...|++++|...+++....    |..++ ..+...+..++.+.|+.++|...+.+.
T Consensus       693 ~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~A  757 (903)
T PRK04841        693 QWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEA  757 (903)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            1345667888999999999999987653    32222 245667777888999999999988775

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.75  E-value=0.0035  Score=51.25  Aligned_cols=183  Identities=14%  Similarity=0.030  Sum_probs=112.7

Q ss_pred             cchhhhHHHHHhhhhhhhHHHHH---------------HcC-CCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc
Q 045498           10 GNFHVYGIRINGMCKIREIDSAI---------------KKG-ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITA   73 (207)
Q Consensus        10 p~~~~~~~ll~~~~~~g~~~~a~---------------~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~   73 (207)
                      -+..+|..+...|.+-.++|-|.               +.. ..|+ .+=....-.....|..++|+.+|.+-++.    
T Consensus       755 kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~----  829 (1416)
T KOG3617|consen  755 KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY----  829 (1416)
T ss_pred             hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH----
Confidence            34567888888888877777666               111 1221 22222222345678888888888877653    


Q ss_pred             chhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHH----------hCC---
Q 045498           74 ELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS----------EKG---  140 (207)
Q Consensus        74 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----------~~g---  140 (207)
                           ..|=+.|...|.|++|.++-+.=.+..   -..||......+-..++.+.|++.|++..          ...   
T Consensus       830 -----DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~  901 (1416)
T KOG3617|consen  830 -----DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQ  901 (1416)
T ss_pred             -----HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHH
Confidence                 334556677788888888776433222   23466666666666777777777665421          111   


Q ss_pred             ------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----------C----------CCCChhhHHHHHHHHHhcC
Q 045498          141 ------LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK----------G----------CFPDSTSFNTVIQGFLVKN  194 (207)
Q Consensus       141 ------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----------~----------~~p~~~~~~~l~~~~~~~~  194 (207)
                            -+.|...|.......-..|+.+.|+.+|...++.          |          -.-|..+...|.+.|-+.|
T Consensus       902 ~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g  981 (1416)
T KOG3617|consen  902 IEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDG  981 (1416)
T ss_pred             HHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhH
Confidence                  1223444444444445667888888777766542          1          1236667778889999999


Q ss_pred             chhHHHHHHHh
Q 045498          195 ETDRASSFLKK  205 (207)
Q Consensus       195 ~~~~a~~~~~~  205 (207)
                      ++.+|..+|.+
T Consensus       982 ~v~~Av~FfTr  992 (1416)
T KOG3617|consen  982 DVVKAVKFFTR  992 (1416)
T ss_pred             HHHHHHHHHHH
Confidence            99999888865

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.75  E-value=0.01  Score=50.53  Aligned_cols=193  Identities=11%  Similarity=0.021  Sum_probs=119.0

Q ss_pred             hhHHHHHhhhhhhhHHHHH-----------HcCC-CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC--c-c
Q 045498           14 VYGIRINGMCKIREIDSAI-----------KKGI-CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ----GIT--A-E   74 (207)
Q Consensus        14 ~~~~ll~~~~~~g~~~~a~-----------~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~--~-~   74 (207)
                      ..+.+...+...|++++|.           ..+. .+-..++..+...+...|++++|...+++....    +..  + .
T Consensus       493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~  572 (903)
T PRK04841        493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH  572 (903)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence            3445555667788888876           1111 112344556667788899999999998876542    211  1 1


Q ss_pred             hhhHHHHHhhHhhhcChhhHHHHHHHHHhC----CCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC-ChhhH-
Q 045498           75 LVTYNPLIHDNWEKQGRFSAMALLQTLERD----KYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP-GVVTY-  148 (207)
Q Consensus        75 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~-  148 (207)
                      ...+..+-..+...|++++|...+.+....    +.......+..+...+...|+++.|.+.++......... ....+ 
T Consensus       573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~  652 (903)
T PRK04841        573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI  652 (903)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence            233445556677789999999988876543    211123344556667788999999999888775421110 11111 


Q ss_pred             ----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          149 ----NILINGLCKKGMIMEADKLLVQMKEKGCFPD---STSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       149 ----~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                          ...+..+...|+.+.|..++...........   ...+..+..++...|+.++|...+++.
T Consensus       653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~a  717 (903)
T PRK04841        653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEEL  717 (903)
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                1122445568899999998776544211111   111456777888999999999988764

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.74  E-value=0.00044  Score=45.08  Aligned_cols=73  Identities=19%  Similarity=0.282  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhhHH
Q 045498          111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE-----KGCFPDSTSFN  184 (207)
Q Consensus       111 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~  184 (207)
                      .....++..+...|+++.|.+..+.+....+- +...|..+|.+|...|+..+|.+.|+.+..     .|+.|++.+-.
T Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~  140 (146)
T PF03704_consen   63 DALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA  140 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence            35667778888899999999999999887543 788999999999999999999999988753     48888887543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.74  E-value=0.0038  Score=52.10  Aligned_cols=78  Identities=13%  Similarity=0.008  Sum_probs=36.4

Q ss_pred             hhHHHHHhhhhhhhHHHHHHcCCCc-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChh
Q 045498           14 VYGIRINGMCKIREIDSAIKKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF   92 (207)
Q Consensus        14 ~~~~ll~~~~~~g~~~~a~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~   92 (207)
                      +|..+..+-.+.|.+.+|+++-++. |+..|..++..+.+.|.|++-.+.+...++..-.|.  +=+.||-+|++.++..
T Consensus      1106 vWsqlakAQL~~~~v~dAieSyikadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~ 1183 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLT 1183 (1666)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHH
Confidence            3444444444445555554333322 344455555555555555555555544443322222  3344555555555544


Q ss_pred             h
Q 045498           93 S   93 (207)
Q Consensus        93 ~   93 (207)
                      +
T Consensus      1184 e 1184 (1666)
T KOG0985|consen 1184 E 1184 (1666)
T ss_pred             H
Confidence            4

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.73  E-value=0.0028  Score=39.73  Aligned_cols=105  Identities=17%  Similarity=0.113  Sum_probs=72.1

Q ss_pred             HHhhHhhhcChhhHHHHHHHHHhCCCCcc--HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC---h-hhHHHHHHH
Q 045498           81 LIHDNWEKQGRFSAMALLQTLERDKYELN--IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG---V-VTYNILING  154 (207)
Q Consensus        81 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~---~-~~~~~li~~  154 (207)
                      +-.++-..|+.++|..+|++....|....  ...+-.+-+++...|++++|..++++.....  |+   . .....+.-+
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~   84 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA   84 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence            34567778899999999999888876644  3456667788888999999999998887652  33   1 122223346


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 045498          155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL  191 (207)
Q Consensus       155 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~  191 (207)
                      +...|+.++|...+-.....    +...|..-|..|.
T Consensus        85 L~~~gr~~eAl~~~l~~la~----~~~~y~ra~~~ya  117 (120)
T PF12688_consen   85 LYNLGRPKEALEWLLEALAE----TLPRYRRAIRFYA  117 (120)
T ss_pred             HHHCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence            67889999998888766543    3345555555543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.72  E-value=0.0012  Score=47.41  Aligned_cols=96  Identities=14%  Similarity=0.000  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCChhhHHHH
Q 045498          111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG--VVTYNILINGLCKKGMIMEADKLLVQMKEKG--CFPDSTSFNTV  186 (207)
Q Consensus       111 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~l  186 (207)
                      ..|...+..+.+.|++++|...|+.+.+.-+...  ...+..+...|...|++++|...|+.+.+.-  -.....++..+
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl  223 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV  223 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence            3455555544566777777777777776532211  2456666777777777777777777776541  11123445555


Q ss_pred             HHHHHhcCchhHHHHHHHhh
Q 045498          187 IQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       187 ~~~~~~~~~~~~a~~~~~~m  206 (207)
                      ...+...|+.++|.+++++.
T Consensus       224 g~~~~~~g~~~~A~~~~~~v  243 (263)
T PRK10803        224 GVIMQDKGDTAKAKAVYQQV  243 (263)
T ss_pred             HHHHHHcCCHHHHHHHHHHH
Confidence            66666777777777777654

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.72  E-value=0.0091  Score=43.60  Aligned_cols=189  Identities=17%  Similarity=0.107  Sum_probs=116.3

Q ss_pred             hhhHHHHHhhhhhhhHHHHH-----------HcCCCc-cHHhHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCcch-
Q 045498           13 HVYGIRINGMCKIREIDSAI-----------KKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVA----QGITAEL-   75 (207)
Q Consensus        13 ~~~~~ll~~~~~~g~~~~a~-----------~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~~~~-   75 (207)
                      ..|......|-..|++++|.           ..+-+. -...|.....+|.+. ++++|...+++...    .| .|+. 
T Consensus        36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~a  113 (282)
T PF14938_consen   36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQA  113 (282)
T ss_dssp             HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHH
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHH
Confidence            45666667777778887776           222222 234455555555444 99999999888753    34 3333 


Q ss_pred             -hhHHHHHhhHhhh-cChhhHHHHHHHHHhC----CCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC-----C
Q 045498           76 -VTYNPLIHDNWEK-QGRFSAMALLQTLERD----KYE-LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV-----P  143 (207)
Q Consensus        76 -~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~-----~  143 (207)
                       .++..+-..|-.. |+++.|.+.|.+..+.    +.+ .-...+..+...+.+.|++++|.++|++....-..     .
T Consensus       114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~  193 (282)
T PF14938_consen  114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY  193 (282)
T ss_dssp             HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence             3667777788888 8999999999886433    311 12356677888899999999999999998765322     1


Q ss_pred             Chh-hHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC--hhhHHHHHHHHHh--cCchhHHHHHH
Q 045498          144 GVV-TYNILINGLCKKGMIMEADKLLVQMKEK--GCFPD--STSFNTVIQGFLV--KNETDRASSFL  203 (207)
Q Consensus       144 ~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~--~~~~~~l~~~~~~--~~~~~~a~~~~  203 (207)
                      +.. .|-..+-++...|++..|.+.+++....  ++..+  ......|+.++-.  ...++++..-|
T Consensus       194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~  260 (282)
T PF14938_consen  194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEY  260 (282)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHH
T ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            222 2333444666789999999999998765  23222  2456667777643  22344444433

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=97.69  E-value=0.00073  Score=42.78  Aligned_cols=51  Identities=12%  Similarity=0.126  Sum_probs=31.5

Q ss_pred             CCcchhhHHHHHhhHhhhcChhhHHHHHHHHH-hCCCCccHHHHHHHHHHHh
Q 045498           71 ITAELVTYNPLIHDNWEKQGRFSAMALLQTLE-RDKYELNIEVYSLVIDGLC  121 (207)
Q Consensus        71 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~~li~~~~  121 (207)
                      ..|+..+..+++.+|+.++++..|.++++.+. ..+++.+..+|..|+.-..
T Consensus        48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~   99 (126)
T PF12921_consen   48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY   99 (126)
T ss_pred             CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            45666666666666666666666666666643 3355555666666665443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.67  E-value=0.00062  Score=38.09  Aligned_cols=61  Identities=20%  Similarity=0.067  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 045498          111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG-MIMEADKLLVQMK  172 (207)
Q Consensus       111 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~  172 (207)
                      .+|..+-..+...|++++|...|++..+.... +...|..+..++.+.| ++++|...++...
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al   65 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKAL   65 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence            34444444455555555555555554444322 3444444444455554 4555555544443

...

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.67  E-value=0.012  Score=43.64  Aligned_cols=107  Identities=19%  Similarity=0.208  Sum_probs=82.4

Q ss_pred             hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 045498           76 VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL  155 (207)
Q Consensus        76 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~  155 (207)
                      .+.+..|.-+...|+...|.++-.+..    -|+..-|...+.+++..++|++..++...   .   -++..|...+.+|
T Consensus       178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~  247 (319)
T PF04840_consen  178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEAC  247 (319)
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHH
Confidence            355666777778888888888876654    46888999999999999999988876542   1   2557899999999


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHH
Q 045498          156 CKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF  202 (207)
Q Consensus       156 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~  202 (207)
                      .+.|+..+|..+...+          .+..-+..|.+.|++.+|.+.
T Consensus       248 ~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~  284 (319)
T PF04840_consen  248 LKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE  284 (319)
T ss_pred             HHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence            9999999999888771          124566777888888887665

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=97.66  E-value=0.0012  Score=53.28  Aligned_cols=106  Identities=14%  Similarity=0.114  Sum_probs=65.3

Q ss_pred             hHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 045498           84 DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME  163 (207)
Q Consensus        84 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~  163 (207)
                      +.....+|.+|+.+++.+......  .--|..+.+.|+..|+++.|.++|-+.         ..++-.|..|.+.|+|++
T Consensus       741 aai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d  809 (1636)
T KOG3616|consen  741 AAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED  809 (1636)
T ss_pred             HHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence            444566777788888777655322  224556667788888888888877542         135566777888888888


Q ss_pred             HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHH
Q 045498          164 ADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF  202 (207)
Q Consensus       164 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~  202 (207)
                      |.++-.+...  .......|.+-..-+-..|++.+|.++
T Consensus       810 a~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeql  846 (1636)
T KOG3616|consen  810 AFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQL  846 (1636)
T ss_pred             HHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhhe
Confidence            8777665532  233444454444445555555555544

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.65  E-value=0.00064  Score=48.71  Aligned_cols=103  Identities=16%  Similarity=0.062  Sum_probs=76.0

Q ss_pred             hHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 045498           84 DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME  163 (207)
Q Consensus        84 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~  163 (207)
                      -+.+.+++.+|...|.+..+.. +-|.+-|..-..+|.+.|+++.|.+=-+..+..... ...+|..|-.+|...|++++
T Consensus        90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~  167 (304)
T KOG0553|consen   90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE  167 (304)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence            4566788888888888888764 236666677788888888888888877777765322 46688888888888888888


Q ss_pred             HHHHHHHHHHcCCCCChhhHHHHHHHH
Q 045498          164 ADKLLVQMKEKGCFPDSTSFNTVIQGF  190 (207)
Q Consensus       164 a~~~~~~m~~~~~~p~~~~~~~l~~~~  190 (207)
                      |.+.|+...+.  .|+-.+|..=++..
T Consensus       168 A~~aykKaLel--dP~Ne~~K~nL~~A  192 (304)
T KOG0553|consen  168 AIEAYKKALEL--DPDNESYKSNLKIA  192 (304)
T ss_pred             HHHHHHhhhcc--CCCcHHHHHHHHHH
Confidence            88888877764  67766666555443

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=97.65  E-value=0.00099  Score=53.68  Aligned_cols=110  Identities=21%  Similarity=0.272  Sum_probs=76.1

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC
Q 045498           46 LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR  125 (207)
Q Consensus        46 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~  125 (207)
                      .+.+.....+|.+|+.+++.+..++.  -..-|..+...|...|+++.|.++|-+-         ..++..|..|.+.|+
T Consensus       738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~k  806 (1636)
T KOG3616|consen  738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGK  806 (1636)
T ss_pred             HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhcccc
Confidence            45566677889999999998877643  3456788889999999999999988642         246778889999999


Q ss_pred             HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 045498          126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL  168 (207)
Q Consensus       126 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~  168 (207)
                      |+.|.++-.+..  |.......|-+-..-.-..|++.+|.++|
T Consensus       807 w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqly  847 (1636)
T KOG3616|consen  807 WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY  847 (1636)
T ss_pred             HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence            999988876543  22334445544444444445444444433

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.64  E-value=0.014  Score=46.30  Aligned_cols=116  Identities=9%  Similarity=0.043  Sum_probs=65.3

Q ss_pred             hhhhhhHHHHH---HcCC---CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHH
Q 045498           22 MCKIREIDSAI---KKGI---CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAM   95 (207)
Q Consensus        22 ~~~~g~~~~a~---~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~   95 (207)
                      +...|+-++|.   +.|+   ..+.+.|+.+--.+....++++|++.|....+.+ +-+...+..+--.=.+.++++...
T Consensus        51 L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~  129 (700)
T KOG1156|consen   51 LNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYL  129 (700)
T ss_pred             hhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHH
Confidence            34455556655   3333   3456677777777777888888888888877654 344555555444444445555544


Q ss_pred             HHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 045498           96 ALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK  139 (207)
Q Consensus        96 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  139 (207)
                      .....+.+.. +.....|..+..++.-.|+...|..++++..+.
T Consensus       130 ~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t  172 (700)
T KOG1156|consen  130 ETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKT  172 (700)
T ss_pred             HHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4444444432 112334445555555555555555555555444

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.64  E-value=0.00043  Score=38.75  Aligned_cols=62  Identities=11%  Similarity=0.070  Sum_probs=54.6

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-chhHHHHHHHhh
Q 045498          144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN-ETDRASSFLKKN  206 (207)
Q Consensus       144 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~m  206 (207)
                      +...|..+...+.+.|++++|...|++..+.. +-+...|..+..++...| ++++|.+.+++.
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a   64 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA   64 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence            46788899999999999999999999999874 337788999999999999 899999999875

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.61  E-value=0.00061  Score=37.62  Aligned_cols=55  Identities=20%  Similarity=0.192  Sum_probs=28.6

Q ss_pred             hHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 045498           84 DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK  139 (207)
Q Consensus        84 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  139 (207)
                      .+...|++++|...|++..+.. +-+...+..+..++...|++++|...|++..+.
T Consensus         6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4445555555555555555544 224455555555555555555555555555443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.59  E-value=0.00074  Score=44.03  Aligned_cols=71  Identities=25%  Similarity=0.273  Sum_probs=48.0

Q ss_pred             hHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHH-----hCCCCCChhhH
Q 045498           77 TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS-----EKGLVPGVVTY  148 (207)
Q Consensus        77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-----~~g~~~~~~~~  148 (207)
                      +...++..+...|++++|..+.+.+.... +.+...|..+|.+|.+.|+...|.+.|+.+.     +.|+.|+..+-
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~  139 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR  139 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence            55667777778888888888888887765 4477788888888888888888888887764     34777776654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=97.56  E-value=0.018  Score=45.94  Aligned_cols=158  Identities=10%  Similarity=0.098  Sum_probs=83.4

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhC-CCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHh
Q 045498           43 YSSLINGLCTFNRLKEAVELFDKMVAQ-GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC  121 (207)
Q Consensus        43 ~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  121 (207)
                      |-.-+....+.+++......|+..... -+.....+|...+......+-++.+.+++++..+.    ++..-...|..++
T Consensus       105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~  180 (835)
T KOG2047|consen  105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLA  180 (835)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHH
Confidence            333344445566666666666665432 33334456777776666777777777777776654    2233566677777


Q ss_pred             cCCCHHHHHHHHHHHHhC------CCCCChhhHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCCCh--hhHHHHHHHH
Q 045498          122 RVGRWEEARKKLDQLSEK------GLVPGVVTYNILINGLCKKGMIME---ADKLLVQMKEKGCFPDS--TSFNTVIQGF  190 (207)
Q Consensus       122 ~~~~~~~a~~~~~~~~~~------g~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~~~~p~~--~~~~~l~~~~  190 (207)
                      +.+++++|-+.+......      .-+.+-..|..+-...++.-+.-.   ...+++.+...  -+|.  ..|.+|.+.|
T Consensus       181 ~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYY  258 (835)
T KOG2047|consen  181 KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYY  258 (835)
T ss_pred             hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHH
Confidence            777777777776665432      112233444444444333322221   11222222111  1222  3455666666


Q ss_pred             HhcCchhHHHHHHHhh
Q 045498          191 LVKNETDRASSFLKKN  206 (207)
Q Consensus       191 ~~~~~~~~a~~~~~~m  206 (207)
                      .+.|++++|..++++.
T Consensus       259 Ir~g~~ekarDvyeea  274 (835)
T KOG2047|consen  259 IRSGLFEKARDVYEEA  274 (835)
T ss_pred             HHhhhhHHHHHHHHHH
Confidence            6666666666666553

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=97.55  E-value=0.0031  Score=45.15  Aligned_cols=105  Identities=11%  Similarity=0.113  Sum_probs=76.0

Q ss_pred             cCCCccHHhHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhc----------------Chh
Q 045498           34 KGICLDVFVYSSLINGLCTF-----NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ----------------GRF   92 (207)
Q Consensus        34 ~~~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----------------~~~   92 (207)
                      .+-+.|..+|-..+..+...     +.++-.-..++.|++.|+.-|..+|+.||+.+=+..                +-.
T Consensus        61 ~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~  140 (406)
T KOG3941|consen   61 EPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQN  140 (406)
T ss_pred             CcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhh
Confidence            34456777888888777654     567777778888889999999999999998765422                223


Q ss_pred             hHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC-HHHHHHHHHHHHh
Q 045498           93 SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR-WEEARKKLDQLSE  138 (207)
Q Consensus        93 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~  138 (207)
                      .+..++++|...|+.||..+-..++.+|++.+- ..+..++.-.|.+
T Consensus       141 C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk  187 (406)
T KOG3941|consen  141 CAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK  187 (406)
T ss_pred             HHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence            477888888888888888888888888887775 3445555555544

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.55  E-value=0.012  Score=40.69  Aligned_cols=154  Identities=13%  Similarity=0.063  Sum_probs=90.7

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCC--CcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHh-
Q 045498           45 SLINGLCTFNRLKEAVELFDKMVAQGI--TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC-  121 (207)
Q Consensus        45 ~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-  121 (207)
                      .....+.+.|++.+|...|+.+.....  +-.....-.+..++.+.|+++.|...++++.+.-.......+...+.+.+ 
T Consensus        10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~   89 (203)
T PF13525_consen   10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY   89 (203)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence            344455678888899988888876521  12223455667788888888888888888766532211111221211111 


Q ss_pred             ------------cCCCHHHHHHHHHHHHhCCCCCChhh------------------HHHHHHHHHhcCCHHHHHHHHHHH
Q 045498          122 ------------RVGRWEEARKKLDQLSEKGLVPGVVT------------------YNILINGLCKKGMIMEADKLLVQM  171 (207)
Q Consensus       122 ------------~~~~~~~a~~~~~~~~~~g~~~~~~~------------------~~~li~~~~~~~~~~~a~~~~~~m  171 (207)
                                  ..+...+|...|+.+.+.-  |+..-                  --.+...|.+.|.+..|..-++.+
T Consensus        90 ~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y--P~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v  167 (203)
T PF13525_consen   90 YKQIPGILRSDRDQTSTRKAIEEFEELIKRY--PNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYV  167 (203)
T ss_dssp             HHHHHHHH-TT---HHHHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHH
T ss_pred             HHhCccchhcccChHHHHHHHHHHHHHHHHC--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence                        1122456677777766552  22211                  123467788999999999999999


Q ss_pred             HHc--CCCCChhhHHHHHHHHHhcCchhHHH
Q 045498          172 KEK--GCFPDSTSFNTVIQGFLVKNETDRAS  200 (207)
Q Consensus       172 ~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~  200 (207)
                      .+.  +......+...++.++.+.|..+.+.
T Consensus       168 ~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  168 IENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            887  11122356688899999999887544

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=97.55  E-value=0.022  Score=45.44  Aligned_cols=149  Identities=7%  Similarity=0.044  Sum_probs=104.4

Q ss_pred             CCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCC------CCcc
Q 045498           36 ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK------YELN  109 (207)
Q Consensus        36 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~------~~~~  109 (207)
                      +.....+|...+......+-++-+..++++..+.    ++..-+-.|..++..+++++|.+.+.......      .+.+
T Consensus       134 vtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn  209 (835)
T KOG2047|consen  134 VTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSN  209 (835)
T ss_pred             hHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccch
Confidence            3344456777777777888889999999998765    33347778888899999999998888775432      2446


Q ss_pred             HHHHHHHHHHHhcCCCHHH---HHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 045498          110 IEVYSLVIDGLCRVGRWEE---ARKKLDQLSEKGLVPG--VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN  184 (207)
Q Consensus       110 ~~~~~~li~~~~~~~~~~~---a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~  184 (207)
                      ...|..+.+..++..+.-.   ...+++.+...  -+|  ...|.+|..-|.+.|.+++|..+|++....  ..+..-|.
T Consensus       210 ~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt  285 (835)
T KOG2047|consen  210 HQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFT  285 (835)
T ss_pred             hhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHH
Confidence            6677777777766655333   33444444432  234  346889999999999999999999987765  33556677


Q ss_pred             HHHHHHHh
Q 045498          185 TVIQGFLV  192 (207)
Q Consensus       185 ~l~~~~~~  192 (207)
                      .+..+|+.
T Consensus       286 ~ifd~Ya~  293 (835)
T KOG2047|consen  286 QIFDAYAQ  293 (835)
T ss_pred             HHHHHHHH
Confidence            77776654

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.52  E-value=0.012  Score=43.66  Aligned_cols=181  Identities=13%  Similarity=0.127  Sum_probs=102.2

Q ss_pred             HHHhhhhhhhHHHHH--HcCCCccHHhHHHHHHH--HHhcC-------ChhHHHHHHHHHHhCCCCcchh-hHHHHHhhH
Q 045498           18 RINGMCKIREIDSAI--KKGICLDVFVYSSLING--LCTFN-------RLKEAVELFDKMVAQGITAELV-TYNPLIHDN   85 (207)
Q Consensus        18 ll~~~~~~g~~~~a~--~~~~~~~~~~~~~ll~~--~~~~~-------~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~   85 (207)
                      ++--|.+.+++.+|.  -....|+. .|.-++.+  +...|       ...-|.+.|.-.-+++..-|.. --.++...+
T Consensus       291 L~iYyL~q~dVqeA~~L~Kdl~Ptt-P~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f  369 (557)
T KOG3785|consen  291 LIIYYLNQNDVQEAISLCKDLDPTT-PYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF  369 (557)
T ss_pred             heeeecccccHHHHHHHHhhcCCCC-hHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence            344567888898888  33344432 12223332  22223       2344555554444454444432 233444555


Q ss_pred             hhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHH-HHHHHHhcCCHHHH
Q 045498           86 WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI-LINGLCKKGMIMEA  164 (207)
Q Consensus        86 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-li~~~~~~~~~~~a  164 (207)
                      --..++++++-.+..+...-.. |...-..+..+.+..|++.+|+++|-.+....++ |..+|-. |.++|.+.++++.|
T Consensus       370 FL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lA  447 (557)
T KOG3785|consen  370 FLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLA  447 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHH
Confidence            5567778888777777665332 3333335677888888888888888777665555 5556654 45788888888888


Q ss_pred             HHHHHHHHHcCCCCChhhHHH-HHHHHHhcCchhHHHHHHH
Q 045498          165 DKLLVQMKEKGCFPDSTSFNT-VIQGFLVKNETDRASSFLK  204 (207)
Q Consensus       165 ~~~~~~m~~~~~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~  204 (207)
                      ++++-.+...   .+..+... +..-|-+.+++--|.+.|+
T Consensus       448 W~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd  485 (557)
T KOG3785|consen  448 WDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFD  485 (557)
T ss_pred             HHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            8776554322   22222222 3335556666655555444

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=97.50  E-value=0.015  Score=42.67  Aligned_cols=131  Identities=12%  Similarity=0.140  Sum_probs=86.7

Q ss_pred             hhHHHHHHHHHHhCCCCcchhhHHHHHhhHhh--hcC----hhhHHHHHHHHHhCCC---CccHHHHHHHHHHHhcCCC-
Q 045498           56 LKEAVELFDKMVAQGITAELVTYNPLIHDNWE--KQG----RFSAMALLQTLERDKY---ELNIEVYSLVIDGLCRVGR-  125 (207)
Q Consensus        56 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~~----~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~~~-  125 (207)
                      +++.+.+++.|++.|+.-+..+|-+..-....  ..+    ..++..+|+.|++...   .++..++..++..  ..++ 
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            45667889999999998888776664433333  223    3458999999998753   3455667777655  3333 


Q ss_pred             ---HHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 045498          126 ---WEEARKKLDQLSEKGLVPG--VVTYNILINGLCKKGM--IMEADKLLVQMKEKGCFPDSTSFNTVIQ  188 (207)
Q Consensus       126 ---~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~l~~  188 (207)
                         .+.++.+|+.+.+.|...+  ......++........  ...+..+++.+.+.|+++....|..+.-
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl  225 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL  225 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence               3567888889988887644  2334444443332222  3478889999999999988777665543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.49  E-value=0.0067  Score=43.70  Aligned_cols=104  Identities=13%  Similarity=0.063  Sum_probs=77.9

Q ss_pred             hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCc--cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC--CChhhHHHH
Q 045498           76 VTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL--NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV--PGVVTYNIL  151 (207)
Q Consensus        76 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~l  151 (207)
                      ..|...+....+.|++++|...|+.+.+.....  ....+.-+...|...|++++|...|+.+.+.-..  .....+-.+
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl  223 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV  223 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence            345666655566799999999999998764321  1357778889999999999999999999865221  124455556


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 045498          152 INGLCKKGMIMEADKLLVQMKEKGCFPDST  181 (207)
Q Consensus       152 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~  181 (207)
                      ...+...|+.++|..+|+.+.+.  -|+..
T Consensus       224 g~~~~~~g~~~~A~~~~~~vi~~--yP~s~  251 (263)
T PRK10803        224 GVIMQDKGDTAKAKAVYQQVIKK--YPGTD  251 (263)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence            67788899999999999999876  35543

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.48  E-value=0.004  Score=44.78  Aligned_cols=100  Identities=15%  Similarity=0.095  Sum_probs=73.9

Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHH
Q 045498           49 GLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE  128 (207)
Q Consensus        49 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~  128 (207)
                      -+.+.+++++|+..|.+.++.. +-|.+-|..--.+|.+.|.++.|.+=.+.....+ +-...+|..|-.+|...|++++
T Consensus        90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~  167 (304)
T KOG0553|consen   90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE  167 (304)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence            3556778888888888888764 4566667777788888888888888777777664 2256688888888888888888


Q ss_pred             HHHHHHHHHhCCCCCChhhHHHHH
Q 045498          129 ARKKLDQLSEKGLVPGVVTYNILI  152 (207)
Q Consensus       129 a~~~~~~~~~~g~~~~~~~~~~li  152 (207)
                      |.+.|++..+.  .|+-.+|-.=+
T Consensus       168 A~~aykKaLel--dP~Ne~~K~nL  189 (304)
T KOG0553|consen  168 AIEAYKKALEL--DPDNESYKSNL  189 (304)
T ss_pred             HHHHHHhhhcc--CCCcHHHHHHH
Confidence            88888877775  56655554433

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.47  E-value=0.012  Score=48.42  Aligned_cols=134  Identities=16%  Similarity=0.161  Sum_probs=95.8

Q ss_pred             HhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhH--hhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHH
Q 045498           51 CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN--WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE  128 (207)
Q Consensus        51 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~  128 (207)
                      ...+++.+|++-..++.+..  |+ ..|...++++  .+.|+.++|..+++.....+.. |..|...+-.+|...++.++
T Consensus        20 ld~~qfkkal~~~~kllkk~--Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~   95 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKH--PN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE   95 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHC--CC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence            45678888888888887763  34 2344445444  5678888999888887766644 78888888899999999999


Q ss_pred             HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 045498          129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL  191 (207)
Q Consensus       129 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~  191 (207)
                      |..+|++....  .|+..-...+..+|.|.+++.+-.++--+|-+. ++-+...|.+++....
T Consensus        96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slil  155 (932)
T KOG2053|consen   96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLIL  155 (932)
T ss_pred             HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHH
Confidence            99999988876  567777888888888888887655555444443 3334455555555443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.47  E-value=0.002  Score=36.44  Aligned_cols=56  Identities=20%  Similarity=0.014  Sum_probs=35.3

Q ss_pred             HHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498          118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK  174 (207)
Q Consensus       118 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  174 (207)
                      ..|.+.+++++|.++++.+...++. +...+.....++.+.|++++|...|+...+.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            3456666666666666666666433 4555556666666666666666666666654

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.44  E-value=0.023  Score=41.07  Aligned_cols=114  Identities=14%  Similarity=0.068  Sum_probs=82.8

Q ss_pred             CcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCC---CHHHHHHHHHHHHhCCCCCChhhH
Q 045498           72 TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG---RWEEARKKLDQLSEKGLVPGVVTY  148 (207)
Q Consensus        72 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~g~~~~~~~~  148 (207)
                      +-|...|-.|-.+|...|+.+.|..-|....+.. .++...+..+..++....   .-.++..+++++...... |+.+.
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral  230 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL  230 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence            5577788888889999999999999888877764 346666666665554332   356788888888887654 67777


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 045498          149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG  189 (207)
Q Consensus       149 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~  189 (207)
                      ..|...+...|++.+|...|+.|.+.  .|....+..+|..
T Consensus       231 ~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie~  269 (287)
T COG4235         231 SLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIER  269 (287)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHHH
Confidence            77778888899999999999998886  2333335555543

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.42  E-value=0.022  Score=44.20  Aligned_cols=127  Identities=15%  Similarity=0.073  Sum_probs=73.4

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHH-------------------------HHHhhHhhhcChhhHHHHHHH
Q 045498           46 LINGLCTFNRLKEAVELFDKMVAQGITAELVTYN-------------------------PLIHDNWEKQGRFSAMALLQT  100 (207)
Q Consensus        46 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-------------------------~ll~~~~~~~~~~~a~~~~~~  100 (207)
                      +-+++.+.++++.++..|.+.......|+...=.                         .--+.+-+.|++..|...|.+
T Consensus       304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte  383 (539)
T KOG0548|consen  304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE  383 (539)
T ss_pred             hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            3345666778888888888876554444422110                         012234456666667777776


Q ss_pred             HHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498          101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK  174 (207)
Q Consensus       101 m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  174 (207)
                      +.+.. +-|...|....-+|.+.|.+..|.+--+...+... +....|.-=..++....++++|.+.|++.++.
T Consensus       384 AIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p-~~~kgy~RKg~al~~mk~ydkAleay~eale~  455 (539)
T KOG0548|consen  384 AIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDP-NFIKAYLRKGAALRAMKEYDKALEAYQEALEL  455 (539)
T ss_pred             HHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            66665 33566666666677777777666666655555521 12334444444444555666666666666654

>PRK15331 chaperone protein SicA; Provisional

Probab=97.38  E-value=0.017  Score=38.16  Aligned_cols=89  Identities=7%  Similarity=-0.143  Sum_probs=70.6

Q ss_pred             hHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 045498           84 DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME  163 (207)
Q Consensus        84 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~  163 (207)
                      -+...|++++|..+|+-+...++. +..-|..|..++-..+++++|...|......+.. |+..+-....++...|+.+.
T Consensus        46 ~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~  123 (165)
T PRK15331         46 EFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAK  123 (165)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHH
Confidence            345689999999999988876643 5666777888888889999999999877766543 55566677788889999999


Q ss_pred             HHHHHHHHHHc
Q 045498          164 ADKLLVQMKEK  174 (207)
Q Consensus       164 a~~~~~~m~~~  174 (207)
                      |...|....+.
T Consensus       124 A~~~f~~a~~~  134 (165)
T PRK15331        124 ARQCFELVNER  134 (165)
T ss_pred             HHHHHHHHHhC
Confidence            99999988874

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.38  E-value=0.054  Score=44.06  Aligned_cols=199  Identities=7%  Similarity=-0.035  Sum_probs=119.2

Q ss_pred             ccccchhhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CcchhhHH
Q 045498            7 RFKGNFHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI-TAELVTYN   79 (207)
Q Consensus         7 ~~~p~~~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~   79 (207)
                      .+.-|+.+|..+.-+..+.|+++.+.      ..+.--....|+.+-..+.-.|.-..|..+.+.-..... ++|+..+-
T Consensus       318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L  397 (799)
T KOG4162|consen  318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL  397 (799)
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence            34556777777777777777777655      233334456677777777777777777777776544322 22333333


Q ss_pred             HHHhhHhhh-cChhhHHHHHHHHHhC--C--CCccHHHHHHHHHHHhcC-----------CCHHHHHHHHHHHHhCCCCC
Q 045498           80 PLIHDNWEK-QGRFSAMALLQTLERD--K--YELNIEVYSLVIDGLCRV-----------GRWEEARKKLDQLSEKGLVP  143 (207)
Q Consensus        80 ~ll~~~~~~-~~~~~a~~~~~~m~~~--~--~~~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~~~~~g~~~  143 (207)
                      ..-+.|.+. +..++++..-.+....  +  -......|..+--+|...           ....++.+.+++..+.+.. 
T Consensus       398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-  476 (799)
T KOG4162|consen  398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-  476 (799)
T ss_pred             HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-
Confidence            333444433 4555555554444331  1  011122233332233211           1234566677777666544 


Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       144 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      |......+.--|+..++++.|....++..+.+-.-+...|..|.-.+...+++.+|+.+.+..
T Consensus       477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~a  539 (799)
T KOG4162|consen  477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAA  539 (799)
T ss_pred             CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence            333333344456678889999999999888866668888888888899999999998887643

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.36  E-value=0.037  Score=41.80  Aligned_cols=166  Identities=12%  Similarity=0.039  Sum_probs=105.2

Q ss_pred             cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCcchhhHHHHHhhHhh---hcChhhHHHHHHHHHhCCCCccHHH
Q 045498           39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQG---ITAELVTYNPLIHDNWE---KQGRFSAMALLQTLERDKYELNIEV  112 (207)
Q Consensus        39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~  112 (207)
                      ++.+...++-.|....+++..+++++.+...-   +.-+..+-....-++.+   .|+.++|++++..+......++..+
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~  219 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT  219 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence            44455566667999999999999999997651   22222322334445566   8899999999999666666778888


Q ss_pred             HHHHHHHHhc---------CCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH----HHHHHH---H-HHHHcC
Q 045498          113 YSLVIDGLCR---------VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM----EADKLL---V-QMKEKG  175 (207)
Q Consensus       113 ~~~li~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~----~a~~~~---~-~m~~~~  175 (207)
                      |..+.+.|-.         ...+++|.+.|++--+.  .||..+--.++..+...|...    +..++-   . .+.+.|
T Consensus       220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg  297 (374)
T PF13281_consen  220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG  297 (374)
T ss_pred             HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence            8888777642         22467788888766554  244443333333333344321    222322   2 222334


Q ss_pred             CC---CChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          176 CF---PDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       176 ~~---p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      ..   .+--.+.+++.+++-.|+.++|.+..++|
T Consensus       298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~  331 (374)
T PF13281_consen  298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKA  331 (374)
T ss_pred             cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            32   34445667888889999999999988876

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.36  E-value=0.00064  Score=39.07  Aligned_cols=59  Identities=20%  Similarity=0.257  Sum_probs=30.9

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCC-hhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498          147 TYNILINGLCKKGMIMEADKLLVQMKEK----GC-FPD-STSFNTVIQGFLVKNETDRASSFLKK  205 (207)
Q Consensus       147 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~  205 (207)
                      +++.+...|...|++++|...|++..+.    |- .|+ ..++..+..++...|++++|.+++++
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~   71 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK   71 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4555555556666666666665555432    10 111 34555556666666666666666654

...

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.34  E-value=0.034  Score=41.32  Aligned_cols=113  Identities=14%  Similarity=0.057  Sum_probs=88.7

Q ss_pred             cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHH
Q 045498           39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID  118 (207)
Q Consensus        39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  118 (207)
                      ...+.+..|.-+...|+...|.++-.+.   + .|+..-|..-+.+++..++|++...+-..   .   -++..|-.++.
T Consensus       176 ~~~Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~  245 (319)
T PF04840_consen  176 VGLSLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVE  245 (319)
T ss_pred             hcCCHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHH
Confidence            3446677788888899998888886665   3 47889999999999999999987775432   1   23478999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045498          119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM  171 (207)
Q Consensus       119 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  171 (207)
                      +|.+.|+..+|..++..          ..+..-+..|.+.|++.+|.+.-.+.
T Consensus       246 ~~~~~~~~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A~~~  288 (319)
T PF04840_consen  246 ACLKYGNKKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEAFKE  288 (319)
T ss_pred             HHHHCCCHHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHHHHc
Confidence            99999999999988876          12366788889999999998765543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.33  E-value=0.015  Score=36.52  Aligned_cols=107  Identities=21%  Similarity=0.171  Sum_probs=69.9

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCcc--hhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCC--ccHHHHHHHHHHHh
Q 045498           46 LINGLCTFNRLKEAVELFDKMVAQGITAE--LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYE--LNIEVYSLVIDGLC  121 (207)
Q Consensus        46 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~  121 (207)
                      +-.++-..|+.++|+.+|++....|...+  ...+-.+-..+...|++++|..++++.......  .+......+..++.
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~   86 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY   86 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence            34456677888899999988888776544  234555667778888889998888887665211  01222222334677


Q ss_pred             cCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 045498          122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC  156 (207)
Q Consensus       122 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~  156 (207)
                      ..|+.++|.+.+-.....    +...|.--|..|.
T Consensus        87 ~~gr~~eAl~~~l~~la~----~~~~y~ra~~~ya  117 (120)
T PF12688_consen   87 NLGRPKEALEWLLEALAE----TLPRYRRAIRFYA  117 (120)
T ss_pred             HCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence            888888888877665542    4446666665554

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.32  E-value=0.018  Score=41.53  Aligned_cols=113  Identities=18%  Similarity=0.077  Sum_probs=89.3

Q ss_pred             CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhc---ChhhHHHHHHHHHhCCCCccHHHH
Q 045498           37 CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ---GRFSAMALLQTLERDKYELNIEVY  113 (207)
Q Consensus        37 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~  113 (207)
                      +-|...|-.|-..|...|+++.|..-|.+..+.. ++++..+..+-.++....   ...++..++++..+.+ +-++.+.
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral  230 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL  230 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence            4478889999999999999999999999998763 456666666666665544   3456999999999886 3377788


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 045498          114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN  153 (207)
Q Consensus       114 ~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~  153 (207)
                      .-+-..+...|++.+|...|+.|.+..  |....+..+|.
T Consensus       231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie  268 (287)
T COG4235         231 SLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE  268 (287)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence            888889999999999999999999984  44445555554

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=97.30  E-value=0.0041  Score=44.57  Aligned_cols=102  Identities=17%  Similarity=0.183  Sum_probs=79.0

Q ss_pred             CcchhhHHHHHhhHhhh-----cChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCC----------------CHHHHH
Q 045498           72 TAELVTYNPLIHDNWEK-----QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG----------------RWEEAR  130 (207)
Q Consensus        72 ~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~----------------~~~~a~  130 (207)
                      ..|..+|-..+..+...     +..+-....++.|.+.|++-|..+|+.|+..+-+..                +-+-+.
T Consensus        64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I  143 (406)
T KOG3941|consen   64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI  143 (406)
T ss_pred             cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence            44666777777666543     556667778889999999999999999999886542                224678


Q ss_pred             HHHHHHHhCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 045498          131 KKLDQLSEKGLVPGVVTYNILINGLCKKGMI-MEADKLLVQMKE  173 (207)
Q Consensus       131 ~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~  173 (207)
                      +++++|...|+.||..+-..|+.++.+.+.. .+..++.-.|-+
T Consensus       144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk  187 (406)
T KOG3941|consen  144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK  187 (406)
T ss_pred             HHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence            8999999999999999999999999998865 455555555544

>PRK15331 chaperone protein SicA; Provisional

Probab=97.28  E-value=0.014  Score=38.49  Aligned_cols=93  Identities=13%  Similarity=-0.056  Sum_probs=71.3

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCC
Q 045498           45 SLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG  124 (207)
Q Consensus        45 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~  124 (207)
                      ..-.-+.+.|++++|..+|.-+.-.+ +-+..-|..|-.++...+++++|...|......+. -|...+--.-.++...|
T Consensus        42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~  119 (165)
T PRK15331         42 AHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMR  119 (165)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhC
Confidence            34445567899999999999987765 34555667777788888999999999988665543 24455666777889999


Q ss_pred             CHHHHHHHHHHHHhC
Q 045498          125 RWEEARKKLDQLSEK  139 (207)
Q Consensus       125 ~~~~a~~~~~~~~~~  139 (207)
                      +.+.|...|+.....
T Consensus       120 ~~~~A~~~f~~a~~~  134 (165)
T PRK15331        120 KAAKARQCFELVNER  134 (165)
T ss_pred             CHHHHHHHHHHHHhC
Confidence            999999999988874

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.26  E-value=0.036  Score=39.54  Aligned_cols=129  Identities=9%  Similarity=-0.002  Sum_probs=95.4

Q ss_pred             hHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHH----
Q 045498           77 TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI----  152 (207)
Q Consensus        77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li----  152 (207)
                      +.+.++..+...+++.-....+.+..+...+.++.....+.+.-.+.|+.+.|...|+...+..-+.+..+++.++    
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            3466777777788888888999999888777788888999999999999999999999887665455655555544    


Q ss_pred             -HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          153 -NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       153 -~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                       ..|.-.+++..|...+.+....+- -|+...+.-.-+..-.|+..+|.+.++.|
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~  312 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAM  312 (366)
T ss_pred             hhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence             344556788888888888776532 24444444444445567889999888776

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.25  E-value=0.038  Score=46.35  Aligned_cols=187  Identities=15%  Similarity=0.064  Sum_probs=104.3

Q ss_pred             hhHHHHHhhhhhhhHHHHH---HcCCC---ccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc--hhhHHHHHhhH
Q 045498           14 VYGIRINGMCKIREIDSAI---KKGIC---LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAE--LVTYNPLIHDN   85 (207)
Q Consensus        14 ~~~~ll~~~~~~g~~~~a~---~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~   85 (207)
                      .|..+-..|+...+...|.   ...+.   -+...+......|++..+++.|..+.-..-+.. +.-  ...|...--.+
T Consensus       494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~yy  572 (1238)
T KOG1127|consen  494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRGPYY  572 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhccccc
Confidence            4455555555544444444   22222   234556667777777777777776622211110 001  11122222344


Q ss_pred             hhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHH--HHHHHhcCCHHH
Q 045498           86 WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL--INGLCKKGMIME  163 (207)
Q Consensus        86 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l--i~~~~~~~~~~~  163 (207)
                      ...++...+..-|+...+..+ -|...|..+..+|.+.|++..|.++|.+....  .|+ .+|...  ....+..|.+.+
T Consensus       573 Lea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~-s~y~~fk~A~~ecd~GkYke  648 (1238)
T KOG1127|consen  573 LEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL-SKYGRFKEAVMECDNGKYKE  648 (1238)
T ss_pred             cCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH-hHHHHHHHHHHHHHhhhHHH
Confidence            556666667776766665543 36778888888888888888888888877765  332 233322  233456788888


Q ss_pred             HHHHHHHHHHc------CCCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498          164 ADKLLVQMKEK------GCFPDSTSFNTVIQGFLVKNETDRASSFLKK  205 (207)
Q Consensus       164 a~~~~~~m~~~------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  205 (207)
                      +...+......      +...-..++-.+...+...|-..++..++++
T Consensus       649 ald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~ek  696 (1238)
T KOG1127|consen  649 ALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEK  696 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            88887766532      2222334555555555555655555555544

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.20  E-value=0.036  Score=46.78  Aligned_cols=146  Identities=17%  Similarity=0.120  Sum_probs=91.7

Q ss_pred             cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHH
Q 045498           39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID  118 (207)
Q Consensus        39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  118 (207)
                      .+.+|..+..+-.+.|.+.+|++-|-+.      -|+..|...+..+.+.|.+++..+.+....+..-+|.+.  +.+|-
T Consensus      1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIF 1174 (1666)
T ss_pred             ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHH
Confidence            3456888888888888888877766332      266788899999999999999888887766665555543  57788


Q ss_pred             HHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--------------------CCCC
Q 045498          119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK--------------------GCFP  178 (207)
Q Consensus       119 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------------------~~~p  178 (207)
                      +|++.+++.+.++++.       .||......+-.-|...+.++.|.-+|......                    .-..
T Consensus      1175 AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred             HHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            8888888877666542       234444444444444444444444433321100                    0113


Q ss_pred             ChhhHHHHHHHHHhcCchhHH
Q 045498          179 DSTSFNTVIQGFLVKNETDRA  199 (207)
Q Consensus       179 ~~~~~~~l~~~~~~~~~~~~a  199 (207)
                      +..||..+-.+|...+.+.-|
T Consensus      1248 s~ktWK~VcfaCvd~~EFrlA 1268 (1666)
T KOG0985|consen 1248 STKTWKEVCFACVDKEEFRLA 1268 (1666)
T ss_pred             chhHHHHHHHHHhchhhhhHH
Confidence            556677777777666666554

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.20  E-value=0.036  Score=45.02  Aligned_cols=124  Identities=17%  Similarity=0.024  Sum_probs=65.8

Q ss_pred             HHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 045498           78 YNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK  157 (207)
Q Consensus        78 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~  157 (207)
                      |...-..+.+.+..++|...+.+..+.. +.....|...-..+...|.+++|.+.|.......+. ++...+++...+.+
T Consensus       653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle  730 (799)
T KOG4162|consen  653 WLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLE  730 (799)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence            3344444455555555555554444432 224445555555555556666666666555554322 34455555666666


Q ss_pred             cCCHHHHHH--HHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHH
Q 045498          158 KGMIMEADK--LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK  204 (207)
Q Consensus       158 ~~~~~~a~~--~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~  204 (207)
                      .|+...+..  ++.++.+.+ +.+...|..+...+-+.|+.++|.+.|.
T Consensus       731 ~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~  778 (799)
T KOG4162|consen  731 LGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQ  778 (799)
T ss_pred             hCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence            665555555  555555543 2355556666666666666666655554

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.18  E-value=0.0046  Score=34.88  Aligned_cols=55  Identities=20%  Similarity=0.181  Sum_probs=28.0

Q ss_pred             hHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 045498           84 DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK  139 (207)
Q Consensus        84 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  139 (207)
                      .+.+.+++++|...++.+...+. .+...+.....++.+.|++++|.+.++...+.
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            34455555555555555554432 24444444555555555555555555555544

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.16  E-value=0.029  Score=44.70  Aligned_cols=151  Identities=11%  Similarity=-0.038  Sum_probs=89.6

Q ss_pred             CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHH
Q 045498           37 CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV  116 (207)
Q Consensus        37 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  116 (207)
                      +-...|....--.+...|+-++|......-.+.. .-+.+.|+.+--.+....++++|+..|+...+.+ +-|...+.-+
T Consensus        38 ~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDl  115 (700)
T KOG1156|consen   38 PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDL  115 (700)
T ss_pred             CccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence            3334444444444555666677766666555543 3355666666666666667777777777666654 2255555555


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHH
Q 045498          117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG-CFPDSTSFNTVIQGF  190 (207)
Q Consensus       117 i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~  190 (207)
                      ----...++++.......+..+.... ....|..+..++.-.|+...|..+.++..+.. -.|+...+......+
T Consensus       116 slLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~L  189 (700)
T KOG1156|consen  116 SLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLL  189 (700)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHH
Confidence            44445666666666666666655322 44556666666677777777777777776553 245666555544433

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.13  E-value=0.0028  Score=36.36  Aligned_cols=62  Identities=21%  Similarity=0.187  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCC-CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045498          111 EVYSLVIDGLCRVGRWEEARKKLDQLSEK----GLV-PG-VVTYNILINGLCKKGMIMEADKLLVQMK  172 (207)
Q Consensus       111 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~-~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~  172 (207)
                      .+++.+...|.+.|++++|...+++..+.    |.. |+ ..++..+..+|...|++++|.+.+++..
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            45666666777777777777776665432    111 11 4456666677777777777777776654

...

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.07  E-value=0.084  Score=40.64  Aligned_cols=145  Identities=18%  Similarity=0.183  Sum_probs=107.4

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHH-HHHHH
Q 045498           40 VFVYSSLINGLCTFNRLKEAVELFDKMVAQG-ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV-YSLVI  117 (207)
Q Consensus        40 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~li  117 (207)
                      ..+|...|+.-.+..-.+.|..+|-+..+.+ +.++..+++++|..++ .|+...|..+|+--...  -||... -+..+
T Consensus       397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl  473 (660)
T COG5107         397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL  473 (660)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence            3567788888888889999999999999988 6788889999997555 57888899999874433  234433 35677


Q ss_pred             HHHhcCCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 045498          118 DGLCRVGRWEEARKKLDQLSEKGLVPG--VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF  190 (207)
Q Consensus       118 ~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~  190 (207)
                      .-+.+.++-+.|..+|+..... +..+  ...|..+|.--...|++..+..+-++|.+.  -|-..+......-|
T Consensus       474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry  545 (660)
T COG5107         474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY  545 (660)
T ss_pred             HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence            7888899999999999955432 1112  458999999999999999998888888765  44444444443333

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.06  E-value=0.025  Score=47.34  Aligned_cols=160  Identities=11%  Similarity=-0.045  Sum_probs=94.8

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCC-ccHHHHHHHHHH
Q 045498           41 FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYE-LNIEVYSLVIDG  119 (207)
Q Consensus        41 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~  119 (207)
                      ..|..|-..|+...+...|.+.|+...+.+ ..+......+...|++..+++.|..+.-.--+.... .-..-|.-.--.
T Consensus       493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y  571 (1238)
T KOG1127|consen  493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY  571 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence            345556666666556666667776666553 334455666677777777777777763222222110 011122223334


Q ss_pred             HhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH--HHhcCchh
Q 045498          120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG--FLVKNETD  197 (207)
Q Consensus       120 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~~~~~  197 (207)
                      |.+.++..++..-|+...+..++ |...|..+..+|.+.|++..|.++|.+....  .|+ .+|.....+  -+..|.+.
T Consensus       572 yLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~-s~y~~fk~A~~ecd~GkYk  647 (1238)
T KOG1127|consen  572 YLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL-SKYGRFKEAVMECDNGKYK  647 (1238)
T ss_pred             ccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH-hHHHHHHHHHHHHHhhhHH
Confidence            55666666777777766666554 7778888888888888888888888877654  343 233333322  34567777


Q ss_pred             HHHHHHHh
Q 045498          198 RASSFLKK  205 (207)
Q Consensus       198 ~a~~~~~~  205 (207)
                      +|...+..
T Consensus       648 eald~l~~  655 (1238)
T KOG1127|consen  648 EALDALGL  655 (1238)
T ss_pred             HHHHHHHH
Confidence            77666554

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.06  E-value=0.031  Score=41.60  Aligned_cols=132  Identities=10%  Similarity=0.046  Sum_probs=93.1

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHH-HHHHHh
Q 045498           43 YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL-VIDGLC  121 (207)
Q Consensus        43 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-li~~~~  121 (207)
                      -.++.+.+.-..++++++-.++.+..-=..-| ...-.+..+.+..|++.+|.++|-++....++ |..+|.+ +.++|.
T Consensus       362 RQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD-~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi  439 (557)
T KOG3785|consen  362 RQSMASYFFLSFQFDDVLTYLNSIESYFTNDD-DFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYI  439 (557)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-hhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHH
Confidence            44566666667789999999988876533333 33334677899999999999999777655555 5666665 458889


Q ss_pred             cCCCHHHHHHHHHHHHhCCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 045498          122 RVGRWEEARKKLDQLSEKGLVPGVVTY-NILINGLCKKGMIMEADKLLVQMKEKGCFPDST  181 (207)
Q Consensus       122 ~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~  181 (207)
                      +++.++.|++++-.+...   .+..+. ..+..-|.+.+.+--|.+.|+.+...  .|++.
T Consensus       440 ~nkkP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pE  495 (557)
T KOG3785|consen  440 RNKKPQLAWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPE  495 (557)
T ss_pred             hcCCchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcc
Confidence            999999997777655432   233333 34457788899999999999988776  34443

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.05  E-value=0.1  Score=40.99  Aligned_cols=131  Identities=16%  Similarity=0.131  Sum_probs=105.8

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-chhhHHHHHhhHhhhcChhhHHHHHHH-HHhCCCCccHHHHHHHHH
Q 045498           41 FVYSSLINGLCTFNRLKEAVELFDKMVAQGITA-ELVTYNPLIHDNWEKQGRFSAMALLQT-LERDKYELNIEVYSLVID  118 (207)
Q Consensus        41 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~-m~~~~~~~~~~~~~~li~  118 (207)
                      .+|...|+...+..-+..|..+|.+..+.+..+ +..+.+++|.-+| .++..-|.++|+- |++.|-  +..--...++
T Consensus       367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d--~p~yv~~Yld  443 (656)
T KOG1914|consen  367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD--SPEYVLKYLD  443 (656)
T ss_pred             eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC--ChHHHHHHHH
Confidence            457777888888888999999999999988777 6677788886555 5778899999987 444432  3344467788


Q ss_pred             HHhcCCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498          119 GLCRVGRWEEARKKLDQLSEKGLVPG--VVTYNILINGLCKKGMIMEADKLLVQMKEK  174 (207)
Q Consensus       119 ~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  174 (207)
                      -+...|+-..+..+|++....++.|+  ...|..++..-...|++..+.++-+++...
T Consensus       444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a  501 (656)
T KOG1914|consen  444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA  501 (656)
T ss_pred             HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            88889999999999999999866655  578999999999999999999998887654

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.03  E-value=0.029  Score=46.23  Aligned_cols=173  Identities=18%  Similarity=0.046  Sum_probs=114.7

Q ss_pred             HhhhhhhhHHHHH-HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhC-C--------CCcchhhHHHHHhhHhhhc
Q 045498           20 NGMCKIREIDSAI-KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ-G--------ITAELVTYNPLIHDNWEKQ   89 (207)
Q Consensus        20 ~~~~~~g~~~~a~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~--------~~~~~~~~~~ll~~~~~~~   89 (207)
                      +.|...|++|.|. ....-.+-.+|..|.+.|.+.++.+-|.-.+-.|... |        ..|+ .+=.-..-.....|
T Consensus       736 SfyvtiG~MD~AfksI~~IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLg  814 (1416)
T KOG3617|consen  736 SFYVTIGSMDAAFKSIQFIKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELG  814 (1416)
T ss_pred             eEEEEeccHHHHHHHHHHHhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHh
Confidence            3466788888888 3333446678999999999999998888777777532 1        1121 11112222346778


Q ss_pred             ChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 045498           90 GRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLV  169 (207)
Q Consensus        90 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~  169 (207)
                      ..++|+.+|++-++.         ..+=..|-..|.|++|.++-+.=.+-.   =..||......+-..++.+.|++.|+
T Consensus       815 MlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyE  882 (1416)
T KOG3617|consen  815 MLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYE  882 (1416)
T ss_pred             hHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHH
Confidence            999999999987753         444556777999999999877543332   23477777777777888888888776


Q ss_pred             HH----------HHcC---------CCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498          170 QM----------KEKG---------CFPDSTSFNTVIQGFLVKNETDRASSFLKK  205 (207)
Q Consensus       170 ~m----------~~~~---------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  205 (207)
                      ..          ....         -.-|...|..-.+.+-..|+.|.|+.+|..
T Consensus       883 K~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~  937 (1416)
T KOG3617|consen  883 KAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS  937 (1416)
T ss_pred             hcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence            43          2110         112445555556666778888888888764

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.98  E-value=0.054  Score=36.65  Aligned_cols=126  Identities=10%  Similarity=0.053  Sum_probs=66.8

Q ss_pred             CcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC-CChhhHHH
Q 045498           72 TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV-PGVVTYNI  150 (207)
Q Consensus        72 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~  150 (207)
                      .|+...--.|-.+..+.|+..+|...|.+...--+.-|....-.+..+....++...|...++.+.+.... -++.+.-.
T Consensus        86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll  165 (251)
T COG4700          86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL  165 (251)
T ss_pred             chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence            34444445555666666666666666666554434445555566666666666666666666655554210 11223344


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHH
Q 045498          151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA  199 (207)
Q Consensus       151 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a  199 (207)
                      +.+.+...|.+.+|+..|+.....  -|+...-......+.+.|+.+++
T Consensus       166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea  212 (251)
T COG4700         166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREA  212 (251)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHH
Confidence            455666666666666666666554  33333333333344455544444

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.91  E-value=0.19  Score=41.78  Aligned_cols=185  Identities=16%  Similarity=0.102  Sum_probs=92.4

Q ss_pred             hHHHHHhhh--hhhhHHHHH-----HcCC-CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHh
Q 045498           15 YGIRINGMC--KIREIDSAI-----KKGI-CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNW   86 (207)
Q Consensus        15 ~~~ll~~~~--~~g~~~~a~-----~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~   86 (207)
                      |..++.++.  +.|+.++|.     -.+. .-|..|...+-.+|...++.++|..+|++....  -|+......+..+|.
T Consensus        44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayv  121 (932)
T KOG2053|consen   44 YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYV  121 (932)
T ss_pred             HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHH
Confidence            444444443  556666665     1111 126667777777777778888888888777655  355666666777777


Q ss_pred             hhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC----------HHHHHHHHHHHHhCC-CCCChhhHHHHHHHH
Q 045498           87 EKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR----------WEEARKKLDQLSEKG-LVPGVVTYNILINGL  155 (207)
Q Consensus        87 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~  155 (207)
                      +.+++.+-.+.--++-+. ++-+...|.++++.....-.          ..-|.+.++.+.+.+ .--+..-...-....
T Consensus       122 R~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL  200 (932)
T KOG2053|consen  122 REKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLIL  200 (932)
T ss_pred             HHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHH
Confidence            777665533333232222 22244455555544432210          223555555555543 111222222223344


Q ss_pred             HhcCCHHHHHHHHHH-HHHcCCCCChhhHHHHHHHHHhcCchhHHHHH
Q 045498          156 CKKGMIMEADKLLVQ-MKEKGCFPDSTSFNTVIQGFLVKNETDRASSF  202 (207)
Q Consensus       156 ~~~~~~~~a~~~~~~-m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~  202 (207)
                      -..|++++|+.++.. .-+.-..-+...-+--+..+...++|.+..++
T Consensus       201 ~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l  248 (932)
T KOG2053|consen  201 ELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFEL  248 (932)
T ss_pred             HhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHH
Confidence            456777777777733 22221111222222333444455555554443

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=96.84  E-value=0.058  Score=34.80  Aligned_cols=128  Identities=15%  Similarity=0.057  Sum_probs=86.8

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHh
Q 045498           42 VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC  121 (207)
Q Consensus        42 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  121 (207)
                      ....++..+.+.+.+.....+++.+.+.+ +.+...++.++..|++... ......++.      .++......+++.|.
T Consensus         9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~   80 (140)
T smart00299        9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCE   80 (140)
T ss_pred             CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHH
Confidence            34567888888889999999999998877 4677889999999987643 334444432      123334455788888


Q ss_pred             cCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 045498          122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK-GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV  192 (207)
Q Consensus       122 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~  192 (207)
                      +.+-++++.-++.++..     .    ...+..+... ++++.|.+++..-      .+...|..++..+..
T Consensus        81 ~~~l~~~~~~l~~k~~~-----~----~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~  137 (140)
T smart00299       81 KAKLYEEAVELYKKDGN-----F----KDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD  137 (140)
T ss_pred             HcCcHHHHHHHHHhhcC-----H----HHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence            88888888888877533     2    2233333333 7788888877751      266678888777654

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.84  E-value=0.063  Score=41.36  Aligned_cols=98  Identities=14%  Similarity=-0.026  Sum_probs=64.7

Q ss_pred             cchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccH----HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhH
Q 045498           73 AELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI----EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY  148 (207)
Q Consensus        73 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~  148 (207)
                      .+...++.+-.++...|++++|...|++..+..  |+.    ..|..+..+|.+.|+.++|.+.+++..+.+ .+   .|
T Consensus        73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f  146 (453)
T PLN03098         73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KF  146 (453)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hH
Confidence            345677888888888888888888888877654  332    358888888888888888888888887752 11   22


Q ss_pred             HHHHH--HHHhcCCHHHHHHHHHHHHHcCC
Q 045498          149 NILIN--GLCKKGMIMEADKLLVQMKEKGC  176 (207)
Q Consensus       149 ~~li~--~~~~~~~~~~a~~~~~~m~~~~~  176 (207)
                      ..+..  .+...++.++..++++...+.|.
T Consensus       147 ~~i~~DpdL~plR~~pef~eLlee~rk~G~  176 (453)
T PLN03098        147 STILNDPDLAPFRASPEFKELQEEARKGGE  176 (453)
T ss_pred             HHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence            21111  11122344566677777776664

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=96.83  E-value=0.12  Score=38.38  Aligned_cols=91  Identities=12%  Similarity=0.052  Sum_probs=53.7

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC
Q 045498           46 LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR  125 (207)
Q Consensus        46 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~  125 (207)
                      .+..+.-.|+...|+.....+.+.. +.|...+..--.+|...|++..|+.=++...+..-. +..++..+-..+-..|+
T Consensus       161 ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd  238 (504)
T KOG0624|consen  161 QLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGD  238 (504)
T ss_pred             HHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhh
Confidence            3444555678888888888777753 567677777777777777777777666655444322 33344444444444555


Q ss_pred             HHHHHHHHHHHHh
Q 045498          126 WEEARKKLDQLSE  138 (207)
Q Consensus       126 ~~~a~~~~~~~~~  138 (207)
                      .+.++..+++..+
T Consensus       239 ~~~sL~~iRECLK  251 (504)
T KOG0624|consen  239 AENSLKEIRECLK  251 (504)
T ss_pred             HHHHHHHHHHHHc
Confidence            5544444444433

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.81  E-value=0.16  Score=39.80  Aligned_cols=84  Identities=17%  Similarity=0.033  Sum_probs=40.1

Q ss_pred             HhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHH
Q 045498          120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA  199 (207)
Q Consensus       120 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a  199 (207)
                      +.+.|++..|.+-|.+++...+. |...|..-.-+|.+.|.+..|+.-.+...+.. ++....|..=..++....++++|
T Consensus       368 ~Fk~gdy~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkA  445 (539)
T KOG0548|consen  368 AFKKGDYPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKA  445 (539)
T ss_pred             HHhccCHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555422 45555555555556665555555544444431 11222233333333333445555


Q ss_pred             HHHHHh
Q 045498          200 SSFLKK  205 (207)
Q Consensus       200 ~~~~~~  205 (207)
                      .+.|.+
T Consensus       446 leay~e  451 (539)
T KOG0548|consen  446 LEAYQE  451 (539)
T ss_pred             HHHHHH
Confidence            554443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.77  E-value=0.085  Score=35.74  Aligned_cols=136  Identities=19%  Similarity=0.173  Sum_probs=103.5

Q ss_pred             HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCC-ccHH
Q 045498           33 KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYE-LNIE  111 (207)
Q Consensus        33 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~  111 (207)
                      +-.+.|++.---.|-.+....|+..+|...|++....-+.-|....-.+-++....+++..+...++.+.+.... -+..
T Consensus        82 ~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd  161 (251)
T COG4700          82 ELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD  161 (251)
T ss_pred             HHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC
Confidence            556677777777889999999999999999999987666677788888888889999999999999998876421 1233


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 045498          112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ  170 (207)
Q Consensus       112 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  170 (207)
                      +--.+.+.+...|.+..|+.-|+...+.  -|+...-...-..+.+.|+.+++..-+..
T Consensus       162 ~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~  218 (251)
T COG4700         162 GHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVA  218 (251)
T ss_pred             chHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            4556778899999999999999999987  44544444444555667766655544433

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.66  E-value=0.23  Score=39.20  Aligned_cols=159  Identities=13%  Similarity=0.052  Sum_probs=101.5

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCC-CCcch-----hhHHHHHhhHhh----hcChhhHHHHHHHHHhCCCCccHHHHH
Q 045498           45 SLINGLCTFNRLKEAVELFDKMVAQG-ITAEL-----VTYNPLIHDNWE----KQGRFSAMALLQTLERDKYELNIEVYS  114 (207)
Q Consensus        45 ~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~  114 (207)
                      .+++..+=.|+-+.+++.+.+-.+.+ +.-..     -+|+..+..++.    ....+.+.+++..+.++  -|+...|.
T Consensus       193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl  270 (468)
T PF10300_consen  193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL  270 (468)
T ss_pred             HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence            34444555788888888888766543 22111     234444443333    44667799999998876  35665555


Q ss_pred             HH-HHHHhcCCCHHHHHHHHHHHHhCCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH-H
Q 045498          115 LV-IDGLCRVGRWEEARKKLDQLSEKGL---VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ-G  189 (207)
Q Consensus       115 ~l-i~~~~~~~~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~-~  189 (207)
                      -. -+.+...|++++|.+.++.......   ......+--+.-.+.-.++|++|...|..+.+..- .+...|.-+.- +
T Consensus       271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a~c  349 (468)
T PF10300_consen  271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAAAC  349 (468)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHHHH
Confidence            44 4566788999999999997654211   11233455566667888999999999999998632 24444444433 3


Q ss_pred             HHhcCch-------hHHHHHHHhh
Q 045498          190 FLVKNET-------DRASSFLKKN  206 (207)
Q Consensus       190 ~~~~~~~-------~~a~~~~~~m  206 (207)
                      +...|+.       ++|.+++++.
T Consensus       350 ~~~l~~~~~~~~~~~~a~~l~~~v  373 (468)
T PF10300_consen  350 LLMLGREEEAKEHKKEAEELFRKV  373 (468)
T ss_pred             HHhhccchhhhhhHHHHHHHHHHH
Confidence            3456777       7788777653

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.63  E-value=0.14  Score=36.39  Aligned_cols=163  Identities=13%  Similarity=0.088  Sum_probs=107.3

Q ss_pred             ccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHH
Q 045498           38 LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI--TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL  115 (207)
Q Consensus        38 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~  115 (207)
                      |-...|+.-+.. .+.|++++|.+.|+.+.++..  +-...+--.++-++.+.++.+.|....++..+.-......-|..
T Consensus        33 p~~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~  111 (254)
T COG4105          33 PASELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY  111 (254)
T ss_pred             CHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence            344456555554 588999999999999987631  33445666778889999999999999999776643323334555


Q ss_pred             HHHHHhcC-------CCHHH---HHHHHHHHHhC----CCCCChhhH------------HHHHHHHHhcCCHHHHHHHHH
Q 045498          116 VIDGLCRV-------GRWEE---ARKKLDQLSEK----GLVPGVVTY------------NILINGLCKKGMIMEADKLLV  169 (207)
Q Consensus       116 li~~~~~~-------~~~~~---a~~~~~~~~~~----g~~~~~~~~------------~~li~~~~~~~~~~~a~~~~~  169 (207)
                      .|.+++..       .+...   |..-|+++...    ...||...-            ..+.+.|.+.|.+..|..-++
T Consensus       112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~  191 (254)
T COG4105         112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFE  191 (254)
T ss_pred             HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence            55554422       23333   33333443332    333443321            345577889999999999999


Q ss_pred             HHHHcCCCC---ChhhHHHHHHHHHhcCchhHHHHH
Q 045498          170 QMKEKGCFP---DSTSFNTVIQGFLVKNETDRASSF  202 (207)
Q Consensus       170 ~m~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~  202 (207)
                      +|.+. .+-   ....+-.+..+|-..|..++|...
T Consensus       192 ~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~  226 (254)
T COG4105         192 EVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKT  226 (254)
T ss_pred             HHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence            99987 222   234566778888888888877654

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.63  E-value=0.078  Score=40.87  Aligned_cols=122  Identities=14%  Similarity=0.079  Sum_probs=79.9

Q ss_pred             ccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcch----hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHH
Q 045498           38 LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL----VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY  113 (207)
Q Consensus        38 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~  113 (207)
                      .+...++.+-.+|.+.|++++|+..|++..+.+  |+.    .+|..+-.+|...|+.++|...+++..+.+ .+   .|
T Consensus        73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f  146 (453)
T PLN03098         73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KF  146 (453)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hH
Confidence            356889999999999999999999999988764  443    358889999999999999999999988752 11   22


Q ss_pred             HHHHH--HHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 045498          114 SLVID--GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK  166 (207)
Q Consensus       114 ~~li~--~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~  166 (207)
                      ..+..  .+....+.++..++++...+.|.. ....+....+.......+-...+
T Consensus       147 ~~i~~DpdL~plR~~pef~eLlee~rk~G~~-~g~~~~~~~kL~~E~~aPfR~~R  200 (453)
T PLN03098        147 STILNDPDLAPFRASPEFKELQEEARKGGED-IGSSFRRDLKLISEVQAPFRGVR  200 (453)
T ss_pred             HHHHhCcchhhhcccHHHHHHHHHHHHhCCc-cCCchhhHHHHHHHHhchHHHHH
Confidence            21111  111222334556666666666543 33445554444444444443333

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.62  E-value=0.26  Score=39.23  Aligned_cols=159  Identities=13%  Similarity=0.082  Sum_probs=104.6

Q ss_pred             HhHHHHHHHHHh--cCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHH--------HHHhCCCCccH
Q 045498           41 FVYSSLINGLCT--FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ--------TLERDKYELNI  110 (207)
Q Consensus        41 ~~~~~ll~~~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--------~m~~~~~~~~~  110 (207)
                      ..+.+++..+.+  .....++..++...-+....-+..+.-.++......|+++.|.+++.        .+.+.+..|  
T Consensus       340 ~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--  417 (652)
T KOG2376|consen  340 SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--  417 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--
Confidence            344555544433  23567777777777665422234566677788889999999999999        555544444  


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC--CCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 045498          111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGL--VPG----VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN  184 (207)
Q Consensus       111 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~--~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~  184 (207)
                      .+...++..+.+.++-+.|..+++.....-.  .+.    ..++..+...-.+.|+.++|..+++++.+.+ ++|..+..
T Consensus       418 ~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~  496 (652)
T KOG2376|consen  418 GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLV  496 (652)
T ss_pred             hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHH
Confidence            4556666777777777777777766543200  112    2233344444567899999999999999863 57888999


Q ss_pred             HHHHHHHhcCchhHHHHHH
Q 045498          185 TVIQGFLVKNETDRASSFL  203 (207)
Q Consensus       185 ~l~~~~~~~~~~~~a~~~~  203 (207)
                      .++.+|++.. .++|..+-
T Consensus       497 ~lV~a~~~~d-~eka~~l~  514 (652)
T KOG2376|consen  497 QLVTAYARLD-PEKAESLS  514 (652)
T ss_pred             HHHHHHHhcC-HHHHHHHh
Confidence            9999998764 56665543

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.61  E-value=0.11  Score=39.29  Aligned_cols=125  Identities=15%  Similarity=0.066  Sum_probs=85.0

Q ss_pred             HHHHhcCChhHHHHHHHHHHhC-----CCCc---------chhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHH
Q 045498           48 NGLCTFNRLKEAVELFDKMVAQ-----GITA---------ELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVY  113 (207)
Q Consensus        48 ~~~~~~~~~~~a~~~~~~m~~~-----~~~~---------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~  113 (207)
                      +.+.+.|++..|..-|++..+.     +.++         -..++..+.-++.+.+++..|+..-......+ ++|+-..
T Consensus       216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL  294 (397)
T KOG0543|consen  216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL  294 (397)
T ss_pred             hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence            4577889999998888875432     1111         22356666777888888888888888888776 4577777


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHHc
Q 045498          114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI-MEADKLLVQMKEK  174 (207)
Q Consensus       114 ~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~  174 (207)
                      .---.++...|+++.|...|+.+.+..+. |...-+.|+..--+.... +...++|..|-..
T Consensus       295 yRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  295 YRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYANMFAK  355 (397)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            77778888888999999999888887432 444444455444444444 3446777777643

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.52  E-value=0.094  Score=42.24  Aligned_cols=71  Identities=7%  Similarity=-0.011  Sum_probs=39.4

Q ss_pred             ccccchhhhHHHHHhhhhhhhHHHHH---HcCCCcc-----------HHhHHHHHHHHHhcCC--hhHHHHHHHHHHhCC
Q 045498            7 RFKGNFHVYGIRINGMCKIREIDSAI---KKGICLD-----------VFVYSSLINGLCTFNR--LKEAVELFDKMVAQG   70 (207)
Q Consensus         7 ~~~p~~~~~~~ll~~~~~~g~~~~a~---~~~~~~~-----------~~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~~   70 (207)
                      .+.|...-+.+-+..|...|.+++|.   -.|+..+           .-.++..=.+|.+.++  +-+.+.-+++++++|
T Consensus       551 ~i~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rg  630 (1081)
T KOG1538|consen  551 SISAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRG  630 (1081)
T ss_pred             eeecccccccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcC
Confidence            34555556666777788888888888   2222221           2223333344444433  334444456677777


Q ss_pred             CCcchhh
Q 045498           71 ITAELVT   77 (207)
Q Consensus        71 ~~~~~~~   77 (207)
                      -.|+...
T Consensus       631 e~P~~iL  637 (1081)
T KOG1538|consen  631 ETPNDLL  637 (1081)
T ss_pred             CCchHHH
Confidence            7777543

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=96.50  E-value=0.077  Score=38.44  Aligned_cols=78  Identities=18%  Similarity=0.144  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhhHHH
Q 045498          111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE-----KGCFPDSTSFNT  185 (207)
Q Consensus       111 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~~  185 (207)
                      .++..++..+...|+.+.+.+.++++...... +...|..++.+|.+.|+...|...|+.+.+     .|+.|...+...
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~  232 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL  232 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence            46677888888899999999999999888654 888999999999999999999999998876     488888887776


Q ss_pred             HHHH
Q 045498          186 VIQG  189 (207)
Q Consensus       186 l~~~  189 (207)
                      ..+.
T Consensus       233 y~~~  236 (280)
T COG3629         233 YEEI  236 (280)
T ss_pred             HHHH
Confidence            6666

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.48  E-value=0.11  Score=33.49  Aligned_cols=71  Identities=13%  Similarity=0.041  Sum_probs=35.2

Q ss_pred             HhcCChhHHHHHHHHHHhCCC--CcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHh
Q 045498           51 CTFNRLKEAVELFDKMVAQGI--TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC  121 (207)
Q Consensus        51 ~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  121 (207)
                      .+.|++++|.+.|+.+..+-.  +-...+--.|+.++.+.+++++|...++++.+.........|...+.+++
T Consensus        21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~   93 (142)
T PF13512_consen   21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS   93 (142)
T ss_pred             HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence            355666666666666655410  11223334455556666666666666666555543322234444444443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.48  E-value=0.17  Score=38.24  Aligned_cols=121  Identities=10%  Similarity=-0.022  Sum_probs=88.0

Q ss_pred             hhHhhhcChhhHHHHHHHHHhC-----CC---------CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhH
Q 045498           83 HDNWEKQGRFSAMALLQTLERD-----KY---------ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY  148 (207)
Q Consensus        83 ~~~~~~~~~~~a~~~~~~m~~~-----~~---------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~  148 (207)
                      +.+.+.|++..|..-|++....     +.         ..-...++.+..++.+.+++..|.+.-.+.+..+.. |....
T Consensus       216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KAL  294 (397)
T KOG0543|consen  216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKAL  294 (397)
T ss_pred             hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHH
Confidence            4667788888888887774322     11         122357788889999999999999999998888644 88888


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh-HHHHHHHHHhcCchh-HHHHHHHhh
Q 045498          149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS-FNTVIQGFLVKNETD-RASSFLKKN  206 (207)
Q Consensus       149 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~~~~~-~a~~~~~~m  206 (207)
                      -.=-.++...|+++.|+..|+.+++.  .|+..+ -..|+.+-.+..... +..++|..|
T Consensus       295 yRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m  352 (397)
T KOG0543|consen  295 YRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANM  352 (397)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88889999999999999999999986  555444 444554444444443 346666665

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.45  E-value=0.42  Score=39.71  Aligned_cols=175  Identities=14%  Similarity=0.155  Sum_probs=109.7

Q ss_pred             hhHHHHHhhhhhhhHHHHH--HcCCCccHHhHHHHHHH----HHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhh
Q 045498           14 VYGIRINGMCKIREIDSAI--KKGICLDVFVYSSLING----LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE   87 (207)
Q Consensus        14 ~~~~ll~~~~~~g~~~~a~--~~~~~~~~~~~~~ll~~----~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~   87 (207)
                      ....-|+.+++...++-|.  ......+......++..    +.+.|++++|..-|-+-... +.|+     .+|.-|..
T Consensus       336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLd  409 (933)
T KOG2114|consen  336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLD  409 (933)
T ss_pred             cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcC
Confidence            3445566666777777777  33334444444444444    44679999998888776554 2333     25566677


Q ss_pred             hcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 045498           88 KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL  167 (207)
Q Consensus        88 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~  167 (207)
                      +.+....-.+++.+.+.|+. +...-..|+.+|.+.++.++..++.+... .|..  ..-....+..+.+.+-.++|..+
T Consensus       410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~L  485 (933)
T KOG2114|consen  410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELL  485 (933)
T ss_pred             HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHH
Confidence            77777788888888888876 66667888999999999988888777655 3321  11244555666666666666665


Q ss_pred             HHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          168 LVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       168 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      -.....     +......+   +-..|++++|.++++.+
T Consensus       486 A~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl  516 (933)
T KOG2114|consen  486 ATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL  516 (933)
T ss_pred             HHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence            554332     22323333   34456677777766543

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=96.40  E-value=0.15  Score=34.01  Aligned_cols=129  Identities=12%  Similarity=0.064  Sum_probs=76.2

Q ss_pred             HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHH
Q 045498           33 KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV  112 (207)
Q Consensus        33 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~  112 (207)
                      ..+++|+...|..+++.+.+.|++..    +.++...++-+|.......+-.+..  ....+.++--+|.++-    ...
T Consensus        22 ~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL----~~~   91 (167)
T PF07035_consen   22 QHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRL----GTA   91 (167)
T ss_pred             HcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHh----hhh
Confidence            67778888888888888888887644    4445556666666555555433332  2222333333333220    013


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045498          113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG  175 (207)
Q Consensus       113 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  175 (207)
                      +..++..+...|++-+|.++.+.....    +......++.+..+.++...-..+|+-..+.+
T Consensus        92 ~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n  150 (167)
T PF07035_consen   92 YEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEERN  150 (167)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            456667777888888888777765332    22334556677677777776666666666543

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.37  E-value=0.3  Score=37.12  Aligned_cols=138  Identities=16%  Similarity=0.174  Sum_probs=72.0

Q ss_pred             CCCccHHhHHHHHHHH--HhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHH
Q 045498           35 GICLDVFVYSSLINGL--CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV  112 (207)
Q Consensus        35 ~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~  112 (207)
                      -+..|....-.++.+-  .-.|+++.|.+-|+-|...- ..-.--...|.-...+.|..+.|.+.-++.-+.-. --...
T Consensus       113 llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP-EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap-~l~WA  190 (531)
T COG3898         113 LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP-ETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAP-QLPWA  190 (531)
T ss_pred             hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh-HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhcc-CCchH
Confidence            3455555555565543  34689999999999886531 11111223333333444555555555444333221 12234


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHhC---------------------------------------CCCCChhhH-HHHH
Q 045498          113 YSLVIDGLCRVGRWEEARKKLDQLSEK---------------------------------------GLVPGVVTY-NILI  152 (207)
Q Consensus       113 ~~~li~~~~~~~~~~~a~~~~~~~~~~---------------------------------------g~~~~~~~~-~~li  152 (207)
                      +...+...+..|+|+.|+++++.-+..                                       .+.||..-- -.-.
T Consensus       191 ~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AA  270 (531)
T COG3898         191 ARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAA  270 (531)
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHH
Confidence            455555555555555555555543221                                       223443222 2234


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHc
Q 045498          153 NGLCKKGMIMEADKLLVQMKEK  174 (207)
Q Consensus       153 ~~~~~~~~~~~a~~~~~~m~~~  174 (207)
                      .++.+.|+..++-.+++.+-+.
T Consensus       271 ralf~d~~~rKg~~ilE~aWK~  292 (531)
T COG3898         271 RALFRDGNLRKGSKILETAWKA  292 (531)
T ss_pred             HHHHhccchhhhhhHHHHHHhc
Confidence            6667777777777777777766

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.28  E-value=0.12  Score=37.00  Aligned_cols=94  Identities=17%  Similarity=0.179  Sum_probs=63.9

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC-ChhhHHHHH
Q 045498          112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLV--PGVVTYNILINGLCKKGMIMEADKLLVQMKEK-GCFP-DSTSFNTVI  187 (207)
Q Consensus       112 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p-~~~~~~~l~  187 (207)
                      .|+.-+.. .+.|++..|...|....+....  .....+-.|..++...|+++.|..+|..+.+. +-.| -+.++--|.
T Consensus       144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            56666655 4566688888888887776332  23445667778888888888888888877764 1122 225566677


Q ss_pred             HHHHhcCchhHHHHHHHhh
Q 045498          188 QGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       188 ~~~~~~~~~~~a~~~~~~m  206 (207)
                      .+..+.|+.++|...|+++
T Consensus       223 ~~~~~l~~~d~A~atl~qv  241 (262)
T COG1729         223 VSLGRLGNTDEACATLQQV  241 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHH
Confidence            7777888888888887764

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=96.28  E-value=0.15  Score=32.83  Aligned_cols=87  Identities=10%  Similarity=-0.004  Sum_probs=63.0

Q ss_pred             HHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 045498           78 YNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK  157 (207)
Q Consensus        78 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~  157 (207)
                      ...++..+...+........++.+...+ ..+....+.++..|++.+. +...+.++.      ..+......+++.|.+
T Consensus        10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~   81 (140)
T smart00299       10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEK   81 (140)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHH
Confidence            4457777777788999999999988887 3678899999999997743 444455442      1244445567777788


Q ss_pred             cCCHHHHHHHHHHHH
Q 045498          158 KGMIMEADKLLVQMK  172 (207)
Q Consensus       158 ~~~~~~a~~~~~~m~  172 (207)
                      .+.++++..++..+.
T Consensus        82 ~~l~~~~~~l~~k~~   96 (140)
T smart00299       82 AKLYEEAVELYKKDG   96 (140)
T ss_pred             cCcHHHHHHHHHhhc
Confidence            888888888877653

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.24  E-value=0.17  Score=38.01  Aligned_cols=194  Identities=11%  Similarity=0.039  Sum_probs=118.6

Q ss_pred             hhhHHHHHhhhhhhhHHHHH-HcCC--------Ccc---HHhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCcc---hh
Q 045498           13 HVYGIRINGMCKIREIDSAI-KKGI--------CLD---VFVYSSLINGLCTFNRLKEAVELFDKMVAQ-GITAE---LV   76 (207)
Q Consensus        13 ~~~~~ll~~~~~~g~~~~a~-~~~~--------~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~---~~   76 (207)
                      .+|..+..+.++.|.+++++ ..+.        .-+   -..|-.+-.++-+--++.+++.+-..-... |..|.   -.
T Consensus        44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq  123 (518)
T KOG1941|consen   44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ  123 (518)
T ss_pred             HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence            45667778888888888887 1111        111   233444444444445555555555443321 22221   12


Q ss_pred             hHHHHHhhHhhhcChhhHHHHHHHHHhCC-----CCccHHHHHHHHHHHhcCCCHHHHHHHHHHH----HhCCCCCChh-
Q 045498           77 TYNPLIHDNWEKQGRFSAMALLQTLERDK-----YELNIEVYSLVIDGLCRVGRWEEARKKLDQL----SEKGLVPGVV-  146 (207)
Q Consensus        77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~-  146 (207)
                      ..-++-.++...+.++++++.|+...+.-     ......+|..+-.-|.+..++++|.-+....    .+.+++ |.. 
T Consensus       124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~  202 (518)
T KOG1941|consen  124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSL  202 (518)
T ss_pred             hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhH
Confidence            34446677777888899998888765432     1224568889999999999999987665543    333433 222 


Q ss_pred             hH-----HHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCchhHHHHHHHhhC
Q 045498          147 TY-----NILINGLCKKGMIMEADKLLVQMKEK----GCFP-DSTSFNTVIQGFLVKNETDRASSFLKKNM  207 (207)
Q Consensus       147 ~~-----~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~  207 (207)
                      -|     ..+.-++-..|.+..|.+..++..+.    |-.| -......+.+.|...|+.+.|..-|++.|
T Consensus       203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am  273 (518)
T KOG1941|consen  203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM  273 (518)
T ss_pred             HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence            22     33445566778888888888776543    3222 23445667778889999999998888764

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.21  E-value=0.34  Score=36.11  Aligned_cols=151  Identities=12%  Similarity=0.127  Sum_probs=91.2

Q ss_pred             cCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhC---CCCccHHHHHHHHHHHhcCCCHHHH
Q 045498           53 FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERD---KYELNIEVYSLVIDGLCRVGRWEEA  129 (207)
Q Consensus        53 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~~~~~~a  129 (207)
                      .|+..+|-..++++.+. .|.|...+.-.=.+|...|+.+.-...++++...   +.+-...+-....-++..+|-+++|
T Consensus       116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA  194 (491)
T KOG2610|consen  116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA  194 (491)
T ss_pred             cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence            45666666667776665 3566666666667777777777777777666533   2222233333444555677888888


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498          130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK---GCFPDSTSFNTVIQGFLVKNETDRASSFLKK  205 (207)
Q Consensus       130 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  205 (207)
                      ++.-++..+.+.. |.-.-.+....+-..|+..++.++..+-...   +--.-...|-...-.+...+.++.|+++|+.
T Consensus       195 Ek~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~  272 (491)
T KOG2610|consen  195 EKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR  272 (491)
T ss_pred             HHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence            8877777766432 5555566666666777777777766543321   1111123344455556666778888877764

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=96.20  E-value=0.12  Score=37.42  Aligned_cols=81  Identities=15%  Similarity=0.093  Sum_probs=67.5

Q ss_pred             hhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-----CCCCCChhhHH
Q 045498           75 LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE-----KGLVPGVVTYN  149 (207)
Q Consensus        75 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~~~  149 (207)
                      ..++..++..+...++.+.+...++++.... +-+...|..++.+|.+.|+...|...|+.+.+     .|+.|...+..
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~  231 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA  231 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence            3578888889999999999999999988876 45788999999999999999999999887765     58888888887


Q ss_pred             HHHHHHH
Q 045498          150 ILINGLC  156 (207)
Q Consensus       150 ~li~~~~  156 (207)
                      .......
T Consensus       232 ~y~~~~~  238 (280)
T COG3629         232 LYEEILR  238 (280)
T ss_pred             HHHHHhc
Confidence            7777643

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.16  E-value=0.34  Score=37.87  Aligned_cols=132  Identities=15%  Similarity=0.043  Sum_probs=79.5

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHH
Q 045498           40 VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG  119 (207)
Q Consensus        40 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  119 (207)
                      ..-.+.++..+-+.|.++.|+++...-.            .-.....+.|+.+.|.++.++      ..+...|..|-+.
T Consensus       295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~  356 (443)
T PF04053_consen  295 KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDE  356 (443)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHH
Confidence            3446777777777777777777653321            123344556666666665543      2256678888888


Q ss_pred             HhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHH
Q 045498          120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA  199 (207)
Q Consensus       120 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a  199 (207)
                      ..+.|+++-|++.+.+..         -+..|+-.|.-.|+.+...++.+.....|-      ++....++.-.|+.++.
T Consensus       357 AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~c  421 (443)
T PF04053_consen  357 ALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEEC  421 (443)
T ss_dssp             HHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred             HHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHH
Confidence            888888888888877543         356666667777777777777766665532      44444555555666666


Q ss_pred             HHHHH
Q 045498          200 SSFLK  204 (207)
Q Consensus       200 ~~~~~  204 (207)
                      .+++.
T Consensus       422 v~lL~  426 (443)
T PF04053_consen  422 VDLLI  426 (443)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.06  E-value=0.42  Score=36.53  Aligned_cols=150  Identities=12%  Similarity=-0.029  Sum_probs=95.2

Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHh--hHhhhcChhhHHHHHHHHHhCCCCccHHH-------------H
Q 045498           49 GLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH--DNWEKQGRFSAMALLQTLERDKYELNIEV-------------Y  113 (207)
Q Consensus        49 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-------------~  113 (207)
                      ++.-.++.++|.+.--..++..   ....+...++  ++....+.+.+...|.+-.+.+  |+...             +
T Consensus       178 cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~  252 (486)
T KOG0550|consen  178 CLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVK  252 (486)
T ss_pred             hhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHH
Confidence            3445677777777766665543   1123344443  3344567777777777766554  33221             1


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhC---CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh---HHHHH
Q 045498          114 SLVIDGLCRVGRWEEARKKLDQLSEK---GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS---FNTVI  187 (207)
Q Consensus       114 ~~li~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~l~  187 (207)
                      ..--.-..+.|++.+|.+.|.+.+..   ..+|+...|-....+..+.|+.++|..-.++..+.    |..-   |-.-.
T Consensus       253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra  328 (486)
T KOG0550|consen  253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRA  328 (486)
T ss_pred             HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHH
Confidence            11223345788999999999888765   33556667777778888899999999888877654    3332   22233


Q ss_pred             HHHHhcCchhHHHHHHHhhC
Q 045498          188 QGFLVKNETDRASSFLKKNM  207 (207)
Q Consensus       188 ~~~~~~~~~~~a~~~~~~m~  207 (207)
                      .++...++|++|.+-+++.|
T Consensus       329 ~c~l~le~~e~AV~d~~~a~  348 (486)
T KOG0550|consen  329 NCHLALEKWEEAVEDYEKAM  348 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            45666788888888887653

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.06  E-value=0.1  Score=38.25  Aligned_cols=105  Identities=11%  Similarity=0.129  Sum_probs=79.6

Q ss_pred             HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCcc
Q 045498           33 KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG---ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN  109 (207)
Q Consensus        33 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~  109 (207)
                      ..|.+.++.+...++..-.+..+++.+...+-+++.+-   ..|+. +-.+.++ .+-.-++++++.++..=.+.|+-||
T Consensus        57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~ir-lllky~pq~~i~~l~npIqYGiF~d  134 (418)
T KOG4570|consen   57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIR-LLLKYDPQKAIYTLVNPIQYGIFPD  134 (418)
T ss_pred             hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHH-HHHccChHHHHHHHhCcchhccccc
Confidence            66777778888888888888889999999888886541   12221 1222232 2334566788988888889999999


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 045498          110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEK  139 (207)
Q Consensus       110 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  139 (207)
                      ..+++.+|+.+.+.+++.+|.++...|...
T Consensus       135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            999999999999999999999988877654

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.04  E-value=0.34  Score=34.64  Aligned_cols=154  Identities=12%  Similarity=0.066  Sum_probs=95.8

Q ss_pred             HhhhhhhhHHHHH------HcCCCccHHhH---HHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhh--h
Q 045498           20 NGMCKIREIDSAI------KKGICLDVFVY---SSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE--K   88 (207)
Q Consensus        20 ~~~~~~g~~~~a~------~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~   88 (207)
                      ..+...|++++|.      ....+-+...-   -.+..++.+.+++++|...+++..+....-...-+...+.+.+.  .
T Consensus        40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~  119 (243)
T PRK10866         40 QQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMAL  119 (243)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhc
Confidence            3344568888887      22222222222   34667889999999999999999886432222333333333321  1


Q ss_pred             ---------------cC---hhhHHHHHHHHHhCCCC----ccHHH------------HHHHHHHHhcCCCHHHHHHHHH
Q 045498           89 ---------------QG---RFSAMALLQTLERDKYE----LNIEV------------YSLVIDGLCRVGRWEEARKKLD  134 (207)
Q Consensus        89 ---------------~~---~~~a~~~~~~m~~~~~~----~~~~~------------~~~li~~~~~~~~~~~a~~~~~  134 (207)
                                     .+   ...|+..|+++.+.-+.    ++...            --.+.+-|.+.|.+.-|..-++
T Consensus       120 ~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~  199 (243)
T PRK10866        120 DDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVE  199 (243)
T ss_pred             chhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence                           11   23466777777655211    11111            1123455788899999999888


Q ss_pred             HHHhC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045498          135 QLSEK--GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE  173 (207)
Q Consensus       135 ~~~~~--g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  173 (207)
                      .+.+.  +.+........++.+|...|..++|..+...+..
T Consensus       200 ~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~  240 (243)
T PRK10866        200 QMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA  240 (243)
T ss_pred             HHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence            88875  2233455677888999999999999998877654

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.01  E-value=0.34  Score=34.39  Aligned_cols=189  Identities=16%  Similarity=0.161  Sum_probs=105.1

Q ss_pred             hhhHHHHHhhhhhhhHHHHH------HcCCCccHH------hHHHHHHHHHhcCChhHHHHHHHHHH----hCCCCcchh
Q 045498           13 HVYGIRINGMCKIREIDSAI------KKGICLDVF------VYSSLINGLCTFNRLKEAVELFDKMV----AQGITAELV   76 (207)
Q Consensus        13 ~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~------~~~~ll~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~   76 (207)
                      ..|.....+|-...++++|.      ..+...|..      .|....-..-....+.++..++++..    +.| .|++.
T Consensus        32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G-spdtA  110 (308)
T KOG1585|consen   32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG-SPDTA  110 (308)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-CcchH
Confidence            34566666777777777776      223333332      23334444445566677777766542    334 44433


Q ss_pred             hHHHHHh--hHhhhcChhhHHHHHHHHHhC---CC--CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCCCC-
Q 045498           77 TYNPLIH--DNWEKQGRFSAMALLQTLERD---KY--ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK----GLVPG-  144 (207)
Q Consensus        77 ~~~~ll~--~~~~~~~~~~a~~~~~~m~~~---~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~~~-  144 (207)
                      .-. |=+  -...+-++++|+++|.+-...   +-  ..-...+...-+.+.+...+++|-..+.+-...    .-.++ 
T Consensus       111 Ama-leKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~  189 (308)
T KOG1585|consen  111 AMA-LEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQ  189 (308)
T ss_pred             HHH-HHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccH
Confidence            211 111  123345677777777764322   10  111234555556667777777765554432211    11122 


Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCchhHHHHHHH
Q 045498          145 VVTYNILINGLCKKGMIMEADKLLVQMKEK---GCFPDSTSFNTVIQGFLVKNETDRASSFLK  204 (207)
Q Consensus       145 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~  204 (207)
                      -..|-..|-.+.-..++..|...++.--..   .-.-+..+...|+.+| ..|+.+++..++.
T Consensus       190 ~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~  251 (308)
T KOG1585|consen  190 CKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS  251 (308)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence            234666667777788999999999874432   1233668899999988 6788888777653

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.96  E-value=0.011  Score=28.27  Aligned_cols=23  Identities=9%  Similarity=0.273  Sum_probs=12.9

Q ss_pred             HHHHHHHHHhcCchhHHHHHHHh
Q 045498          183 FNTVIQGFLVKNETDRASSFLKK  205 (207)
Q Consensus       183 ~~~l~~~~~~~~~~~~a~~~~~~  205 (207)
                      |..|...|.+.|++++|.+++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            45555566666666666666554

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.95  E-value=0.34  Score=37.55  Aligned_cols=123  Identities=15%  Similarity=0.120  Sum_probs=89.3

Q ss_pred             hhHHHHHhhHhhhcChhhHHHHHHHHHhCC-CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhH-HHHHH
Q 045498           76 VTYNPLIHDNWEKQGRFSAMALLQTLERDK-YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY-NILIN  153 (207)
Q Consensus        76 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~  153 (207)
                      .+|...|+...+....+.|..+|-+..+.+ +.+++.++++++..++ .|+..-|..+|+.=...  -||...| +-.+.
T Consensus       398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~  474 (660)
T COG5107         398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL  474 (660)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence            456677788788888889999999998888 6678888899988776 56778888888854443  3455554 45667


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCchhHHHHH
Q 045498          154 GLCKKGMIMEADKLLVQMKEKGCFPD--STSFNTVIQGFLVKNETDRASSF  202 (207)
Q Consensus       154 ~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~  202 (207)
                      .+.+.++-+.|..+|+.-.+. +..+  ...|..+|..=..-|+...+..+
T Consensus       475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sL  524 (660)
T COG5107         475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSL  524 (660)
T ss_pred             HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhH
Confidence            777888889999999854433 2222  46788888877777777655544

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.91  E-value=0.3  Score=38.16  Aligned_cols=133  Identities=16%  Similarity=0.055  Sum_probs=98.4

Q ss_pred             hhhHHHHHhhhhhhhHHHHHHcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChh
Q 045498           13 HVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF   92 (207)
Q Consensus        13 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~   92 (207)
                      .-.+.++.-+.+.|..+.|+.--..|+     .-.....+.|+++.|.++.++.      .+...|..|-..+...|+++
T Consensus       296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~-----~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~  364 (443)
T PF04053_consen  296 DQGQSIARFLEKKGYPELALQFVTDPD-----HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIE  364 (443)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHSS-HH-----HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHH
T ss_pred             hHHHHHHHHHHHCCCHHHHHhhcCChH-----HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHH
Confidence            347888888889999999996655554     3456667889999998876443      36679999999999999999


Q ss_pred             hHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045498           93 SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM  171 (207)
Q Consensus        93 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  171 (207)
                      -|...|.+..         -|..++--|.-.|+.+...++.+.....|      -++....++.-.|+.+++.+++.+-
T Consensus       365 lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~  428 (443)
T PF04053_consen  365 LAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIET  428 (443)
T ss_dssp             HHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred             HHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            9999998644         35677777888899888888888877765      3566666777788888888877653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.90  E-value=0.54  Score=36.86  Aligned_cols=61  Identities=18%  Similarity=0.139  Sum_probs=47.9

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498          114 SLVIDGLCRVGRWEEARKKLDQLSEKGLV-PGVVTYNILINGLCKKGMIMEADKLLVQMKEK  174 (207)
Q Consensus       114 ~~li~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  174 (207)
                      ..+..++-+.|+.++|.+.+++|.+.... -+......|+.++...+.+.++..++.+-.+.
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi  324 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI  324 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence            44566677889999999999999865322 23457788999999999999999999987543

The molecular function of this protein is uncertain.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.88  E-value=0.65  Score=36.73  Aligned_cols=129  Identities=18%  Similarity=0.118  Sum_probs=87.7

Q ss_pred             hHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCcchhhHHHHH-hhHhhhcChhhHHHHHHHHHhCC---CCccHHHH
Q 045498           42 VYSSLINGLCT----FNRLKEAVELFDKMVAQGITAELVTYNPLI-HDNWEKQGRFSAMALLQTLERDK---YELNIEVY  113 (207)
Q Consensus        42 ~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~  113 (207)
                      .|+..+..+..    ....+.|.++++.+.++  -|+...|...- +.+...|+.++|.+.+++.....   .+.....+
T Consensus       231 ~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~  308 (468)
T PF10300_consen  231 WYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCY  308 (468)
T ss_pred             HHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHH
Confidence            35555554443    45678899999999887  46766554443 45567899999999999755321   12234456


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHH-HHHHhcCCH-------HHHHHHHHHHHH
Q 045498          114 SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI-NGLCKKGMI-------MEADKLLVQMKE  173 (207)
Q Consensus       114 ~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li-~~~~~~~~~-------~~a~~~~~~m~~  173 (207)
                      .-+.-++.-.++|++|.+.|..+.+..- -+...|.-+. .++...|+.       ++|.++|.+...
T Consensus       309 ~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  309 FELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence            6677778889999999999999988632 2334444333 344566777       888888887653

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=95.85  E-value=0.37  Score=39.46  Aligned_cols=52  Identities=12%  Similarity=0.169  Sum_probs=29.3

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHH
Q 045498          144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK  204 (207)
Q Consensus       144 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~  204 (207)
                      +....-.+..++...|.-++|.+.+-+.-    .|     ...+.+|...++|.+|.++-+
T Consensus       851 ~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW~~avelaq  902 (1189)
T KOG2041|consen  851 DSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQWGEAVELAQ  902 (1189)
T ss_pred             ccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHHHHHHHHHH
Confidence            44445556666666666666666554321    11     224556667777777766644

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.80  E-value=0.17  Score=37.19  Aligned_cols=127  Identities=17%  Similarity=0.157  Sum_probs=80.3

Q ss_pred             HHHHHHhcCChhHHHHHHHHHH----------hCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCC---CCccHHH
Q 045498           46 LINGLCTFNRLKEAVELFDKMV----------AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK---YELNIEV  112 (207)
Q Consensus        46 ll~~~~~~~~~~~a~~~~~~m~----------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~  112 (207)
                      |.++|.....|+.-....-.+-          ..|.+.+..+...++...-...+++.+...+-++...-   ..|+. +
T Consensus        25 LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~  103 (418)
T KOG4570|consen   25 LSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-T  103 (418)
T ss_pred             hHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-c
Confidence            5556666666765443332322          23445555666666666666677777777776665432   11221 2


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498          113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK  174 (207)
Q Consensus       113 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  174 (207)
                      -.+.++-+.+ -++++++-++..=..-|+-||..++..+|..+.+.+++.+|..+...|..+
T Consensus       104 ~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  104 IHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             HHHHHHHHHc-cChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            2233333333 356678777777778888888888888888888888888888887777654

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.73  E-value=0.054  Score=27.16  Aligned_cols=28  Identities=18%  Similarity=0.260  Sum_probs=19.4

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 045498           42 VYSSLINGLCTFNRLKEAVELFDKMVAQ   69 (207)
Q Consensus        42 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~   69 (207)
                      ++..+-..|.+.|++++|.++|++..+.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~   30 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALAL   30 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4556666777777777777777777665

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.71  E-value=0.072  Score=26.68  Aligned_cols=27  Identities=22%  Similarity=0.208  Sum_probs=13.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498          148 YNILINGLCKKGMIMEADKLLVQMKEK  174 (207)
Q Consensus       148 ~~~li~~~~~~~~~~~a~~~~~~m~~~  174 (207)
                      +..+...|.+.|++++|.++|++..+.
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~   30 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALAL   30 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            344444555555555555555554443

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=95.66  E-value=0.56  Score=34.15  Aligned_cols=136  Identities=13%  Similarity=0.087  Sum_probs=84.4

Q ss_pred             hhHHHHHHHHHHh-CCCCcchhhHHHHHhhHhhhcC--hhhHHHHHHHHHh-CCCCccHHHHHHHHHHHhcCCCHHHHHH
Q 045498           56 LKEAVELFDKMVA-QGITAELVTYNPLIHDNWEKQG--RFSAMALLQTLER-DKYELNIEVYSLVIDGLCRVGRWEEARK  131 (207)
Q Consensus        56 ~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~  131 (207)
                      +.+|+++|+...- ..+--|..+...+++......+  ...-.++.+-+.. .+-.++..+...++..+++.++|.+-.+
T Consensus       144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~  223 (292)
T PF13929_consen  144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ  223 (292)
T ss_pred             HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence            3445555542211 2244566677777777766222  2223333333332 2346677788888888888888888888


Q ss_pred             HHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHH-----HHHcCCCCChhhHHHHHHHHH
Q 045498          132 KLDQLSEK-GLVPGVVTYNILINGLCKKGMIMEADKLLVQ-----MKEKGCFPDSTSFNTVIQGFL  191 (207)
Q Consensus       132 ~~~~~~~~-g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-----m~~~~~~p~~~~~~~l~~~~~  191 (207)
                      +++..... +..-|...|..+|..-...|+..-..++.++     +++.|+..+...-.++-+.+.
T Consensus       224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~  289 (292)
T PF13929_consen  224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK  289 (292)
T ss_pred             HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence            88876655 5566788888888888888888877777664     234456556655555544443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.57  E-value=0.57  Score=33.67  Aligned_cols=97  Identities=18%  Similarity=0.141  Sum_probs=71.6

Q ss_pred             hHHHHHhhHhhhcChhhHHHHHHHHHhCCCC--ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC-C-ChhhHHHHH
Q 045498           77 TYNPLIHDNWEKQGRFSAMALLQTLERDKYE--LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV-P-GVVTYNILI  152 (207)
Q Consensus        77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~-~-~~~~~~~li  152 (207)
                      .|+..+. +.+.|++..|..-|....+....  .....+.-|..++...|++++|..+|..+.+.-.+ | -+..+--|.
T Consensus       144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            4777775 45566799999999888876422  23456677888899999999999998888765221 1 235666677


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHc
Q 045498          153 NGLCKKGMIMEADKLLVQMKEK  174 (207)
Q Consensus       153 ~~~~~~~~~~~a~~~~~~m~~~  174 (207)
                      .+..+.|+.++|...|+++.+.
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHH
Confidence            7788889999999999998876

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.45  E-value=0.48  Score=32.06  Aligned_cols=60  Identities=10%  Similarity=0.072  Sum_probs=27.3

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcch--hhHHHHHhhHhhhcChhhHHHHHHHH
Q 045498           42 VYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL--VTYNPLIHDNWEKQGRFSAMALLQTL  101 (207)
Q Consensus        42 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m  101 (207)
                      .+..+...|.+.|+.++|++.|.++......+..  ..+-.+|......+++..+...+.+.
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka   99 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA   99 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            3444555555555555555555555443322221  22333444444445555444444443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=95.42  E-value=0.46  Score=31.72  Aligned_cols=100  Identities=18%  Similarity=0.149  Sum_probs=58.7

Q ss_pred             HHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC--HHHHHHHHHHHH
Q 045498           60 VELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR--WEEARKKLDQLS  137 (207)
Q Consensus        60 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~  137 (207)
                      .++++.+.+.+++|+...+..++..+.+.|++..    +..+.+.++-+|.......+-.+.....  ...|.+++.++.
T Consensus        14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~   89 (167)
T PF07035_consen   14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG   89 (167)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence            3455556667778888888888888888887655    3444455555555444444433332211  223333333333


Q ss_pred             hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045498          138 EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM  171 (207)
Q Consensus       138 ~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  171 (207)
                      .        .+..++..+...|++-+|.++.+..
T Consensus        90 ~--------~~~~iievLL~~g~vl~ALr~ar~~  115 (167)
T PF07035_consen   90 T--------AYEEIIEVLLSKGQVLEALRYARQY  115 (167)
T ss_pred             h--------hHHHHHHHHHhCCCHHHHHHHHHHc
Confidence            1        4556667777788888887777664

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.37  E-value=0.42  Score=30.92  Aligned_cols=82  Identities=18%  Similarity=0.177  Sum_probs=61.0

Q ss_pred             hHHHHHhhHhhhcChhhHHHHHHHHHhCCC--CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 045498           77 TYNPLIHDNWEKQGRFSAMALLQTLERDKY--ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING  154 (207)
Q Consensus        77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~  154 (207)
                      .|+.- ....+.|++++|.+.|+.+..+-.  +-....--.++.+|.+.++++.|...+++.++..+.-....|-..+.+
T Consensus        13 ly~~a-~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g   91 (142)
T PF13512_consen   13 LYQEA-QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG   91 (142)
T ss_pred             HHHHH-HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence            34433 355678999999999999987732  224567778899999999999999999999998665445566666666


Q ss_pred             HHhcC
Q 045498          155 LCKKG  159 (207)
Q Consensus       155 ~~~~~  159 (207)
                      ++...
T Consensus        92 L~~~~   96 (142)
T PF13512_consen   92 LSYYE   96 (142)
T ss_pred             HHHHH
Confidence            55443

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.25  E-value=0.019  Score=37.17  Aligned_cols=54  Identities=13%  Similarity=0.114  Sum_probs=25.6

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHH
Q 045498           46 LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ   99 (207)
Q Consensus        46 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~   99 (207)
                      ++..+.+.+.+.....+++.+...+...+....+.++..|++.+..+...++++
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~   66 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK   66 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence            344444455555555555555544433444555555555555544444444443

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=95.24  E-value=0.85  Score=33.69  Aligned_cols=139  Identities=13%  Similarity=0.111  Sum_probs=85.2

Q ss_pred             HcCCCccHHhHHHHHHHHHh--cC----ChhHHHHHHHHHHhCCC---CcchhhHHHHHhhHhhhcCh----hhHHHHHH
Q 045498           33 KKGICLDVFVYSSLINGLCT--FN----RLKEAVELFDKMVAQGI---TAELVTYNPLIHDNWEKQGR----FSAMALLQ   99 (207)
Q Consensus        33 ~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~m~~~~~---~~~~~~~~~ll~~~~~~~~~----~~a~~~~~   99 (207)
                      +.|++.+..+|-+.......  ..    ...+|..+|+.|++.+.   .++..++..++..  ...+.    +.+..+|+
T Consensus        90 ~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~  167 (297)
T PF13170_consen   90 EAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQ  167 (297)
T ss_pred             HhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHH
Confidence            78888888776664443333  22    35678999999998753   3445666666644  33333    45888899


Q ss_pred             HHHhCCCCccH--HHHHHHHHHHhcCCC--HHHHHHHHHHHHhCCCCCChhhHHHHHHHH-HhcCC---HHHHHHHHHHH
Q 045498          100 TLERDKYELNI--EVYSLVIDGLCRVGR--WEEARKKLDQLSEKGLVPGVVTYNILINGL-CKKGM---IMEADKLLVQM  171 (207)
Q Consensus       100 ~m~~~~~~~~~--~~~~~li~~~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~li~~~-~~~~~---~~~a~~~~~~m  171 (207)
                      .+.+.|+..+.  .....++........  ...+.++++.+.+.|+++....|..+.-.. ...+.   .+...++.+.+
T Consensus       168 ~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~~~~i~ev~~~L  247 (297)
T PF13170_consen  168 KLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKIVEEIKEVIDEL  247 (297)
T ss_pred             HHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence            99988876543  333333333322222  447888999999999998887776554332 22222   33444444444


Q ss_pred             HH
Q 045498          172 KE  173 (207)
Q Consensus       172 ~~  173 (207)
                      .+
T Consensus       248 ~~  249 (297)
T PF13170_consen  248 KE  249 (297)
T ss_pred             hh
Confidence            44

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=95.17  E-value=0.97  Score=33.92  Aligned_cols=180  Identities=9%  Similarity=0.006  Sum_probs=81.0

Q ss_pred             hhhhhhhHHHHH---HcCCCccHHhHHHHH---HHHHhcCChhHHHHHHHHHHhCCCCcchhhH-HHHHhhHhhhcChhh
Q 045498           21 GMCKIREIDSAI---KKGICLDVFVYSSLI---NGLCTFNRLKEAVELFDKMVAQGITAELVTY-NPLIHDNWEKQGRFS   93 (207)
Q Consensus        21 ~~~~~g~~~~a~---~~~~~~~~~~~~~ll---~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~~~~~~~   93 (207)
                      .+...|++..|+   ...+..|+..|-++.   ..|...|+-..|+.=+.+..+.  +||-..- -.--..+.+.|..+.
T Consensus        47 ~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Gele~  124 (504)
T KOG0624|consen   47 ELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGELEQ  124 (504)
T ss_pred             HHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcccHHH
Confidence            333444555555   333344444444432   2444455555555555544443  3441110 011123455566666


Q ss_pred             HHHHHHHHHhCCCCc------------cH--HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 045498           94 AMALLQTLERDKYEL------------NI--EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG  159 (207)
Q Consensus        94 a~~~~~~m~~~~~~~------------~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~  159 (207)
                      |..=|+...+....-            ..  ......+..+.-.|+...|++....+.+..+ -|...|..-..+|...|
T Consensus       125 A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~  203 (504)
T KOG0624|consen  125 AEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEG  203 (504)
T ss_pred             HHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcC
Confidence            666666655443210            00  1112223334445566666666666655432 24555555556666666


Q ss_pred             CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHH
Q 045498          160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK  204 (207)
Q Consensus       160 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~  204 (207)
                      ++..|..=++...+.. ..|..++.-+-..+-..|+.+.++..++
T Consensus       204 e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iR  247 (504)
T KOG0624|consen  204 EPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIR  247 (504)
T ss_pred             cHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            6665555444443331 1233333334444444555554444443

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.15  E-value=0.48  Score=38.88  Aligned_cols=114  Identities=15%  Similarity=0.180  Sum_probs=88.2

Q ss_pred             CCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHH
Q 045498           70 GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN  149 (207)
Q Consensus        70 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~  149 (207)
                      |......+.+.-+.-+...|+-.+|.++-.+.+    -|+...|..-+.+++..++|++-+++-+..+      .+.-|.
T Consensus       679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~  748 (829)
T KOG2280|consen  679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYL  748 (829)
T ss_pred             ccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCch
Confidence            333444566777778888899999998887766    5688999999999999999998877665433      355788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHH
Q 045498          150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF  202 (207)
Q Consensus       150 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~  202 (207)
                      -.+.+|.+.|+.++|.+++.+....     .    -.+.+|.+.|++.+|.++
T Consensus       749 PFVe~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~  792 (829)
T KOG2280|consen  749 PFVEACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADL  792 (829)
T ss_pred             hHHHHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHH
Confidence            8999999999999999988764321     1    577888888888888765

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=95.13  E-value=0.32  Score=29.40  Aligned_cols=47  Identities=15%  Similarity=0.108  Sum_probs=28.3

Q ss_pred             hHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 045498           93 SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK  139 (207)
Q Consensus        93 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  139 (207)
                      +..+-+..+...++.|++.+..+.+++|-|.+++..|.++++-.+.+
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K   74 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK   74 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            45555666666666667777777777777777777777777666554

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.10  E-value=0.083  Score=25.15  Aligned_cols=26  Identities=19%  Similarity=-0.028  Sum_probs=19.3

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045498          147 TYNILINGLCKKGMIMEADKLLVQMK  172 (207)
Q Consensus       147 ~~~~li~~~~~~~~~~~a~~~~~~m~  172 (207)
                      +|..|...|.+.|++++|..+|++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            46677788888888888888888744

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.07  E-value=0.92  Score=33.14  Aligned_cols=148  Identities=17%  Similarity=0.094  Sum_probs=95.5

Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHH
Q 045498           49 GLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE  128 (207)
Q Consensus        49 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~  128 (207)
                      .....+++.+|..+|....... +-+...--.+..++...|+.+.|..++..+....-.........-|..+.+.....+
T Consensus       143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~  221 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE  221 (304)
T ss_pred             hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence            3456778888888888877653 223456667778888888888888888876654322222222333445555555555


Q ss_pred             HHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCchhHHH
Q 045498          129 ARKKLDQLSEKGLVP-GVVTYNILINGLCKKGMIMEADKLLVQMKEKG-CFPDSTSFNTVIQGFLVKNETDRAS  200 (207)
Q Consensus       129 a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~  200 (207)
                      ...+-+..-..   | |...-..+...+...|+.+.|.+.+-.+.+.+ -.-|...-..|+..+.--|.-+-+.
T Consensus       222 ~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~  292 (304)
T COG3118         222 IQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLV  292 (304)
T ss_pred             HHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHH
Confidence            55555555543   4 66777788888899999999888776665542 2235566777888777766444443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.91  E-value=0.73  Score=31.19  Aligned_cols=95  Identities=14%  Similarity=0.040  Sum_probs=69.0

Q ss_pred             hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCcc--HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC---CCh----h
Q 045498           76 VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN--IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV---PGV----V  146 (207)
Q Consensus        76 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~---~~~----~  146 (207)
                      ..+..+...|++.|+.+.|.+.|.++......+.  ...+-.+|+...-.+++..+...+.+....--.   ++.    .
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            5788899999999999999999999988765543  456778889999999999999888776554222   111    1


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045498          147 TYNILINGLCKKGMIMEADKLLVQMK  172 (207)
Q Consensus       147 ~~~~li~~~~~~~~~~~a~~~~~~m~  172 (207)
                      .|..+.  +...+++..|-+.|-+..
T Consensus       117 ~~~gL~--~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  117 VYEGLA--NLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHHH--HHHhchHHHHHHHHHccC
Confidence            222222  235688888888887664

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=94.90  E-value=0.38  Score=28.75  Aligned_cols=47  Identities=15%  Similarity=0.092  Sum_probs=28.6

Q ss_pred             hhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 045498           91 RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLS  137 (207)
Q Consensus        91 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  137 (207)
                      .-++.+-+..+...++.|+..+..+.+++|-|.+++..|.++++-.+
T Consensus        23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK   69 (103)
T cd00923          23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK   69 (103)
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            33455555555556666666666666666666666666666666555

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.68  E-value=0.018  Score=37.26  Aligned_cols=89  Identities=16%  Similarity=0.165  Sum_probs=67.8

Q ss_pred             HHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 045498           79 NPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK  158 (207)
Q Consensus        79 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~  158 (207)
                      ..++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.       .+......++..|.+.
T Consensus        11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~   83 (143)
T PF00637_consen   11 SEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKH   83 (143)
T ss_dssp             CCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTT
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhc
Confidence            346777888889999999999988776666788899999999999888888888771       1223446778888889


Q ss_pred             CCHHHHHHHHHHHHHc
Q 045498          159 GMIMEADKLLVQMKEK  174 (207)
Q Consensus       159 ~~~~~a~~~~~~m~~~  174 (207)
                      |.++++.-++.++...
T Consensus        84 ~l~~~a~~Ly~~~~~~   99 (143)
T PF00637_consen   84 GLYEEAVYLYSKLGNH   99 (143)
T ss_dssp             TSHHHHHHHHHCCTTH
T ss_pred             chHHHHHHHHHHcccH
Confidence            9999999988876543

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=94.62  E-value=1.7  Score=33.94  Aligned_cols=39  Identities=21%  Similarity=0.337  Sum_probs=18.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCChhhHHHHH
Q 045498          149 NILINGLCKKGMIMEADKLLVQMKEKG----CFPDSTSFNTVI  187 (207)
Q Consensus       149 ~~li~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~~~~~l~  187 (207)
                      +..+.++...|++.++..+++++...=    ...+..+|+.++
T Consensus       132 ~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v  174 (549)
T PF07079_consen  132 EIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV  174 (549)
T ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence            334444455555555555555544331    224555555433

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=94.59  E-value=1.8  Score=34.31  Aligned_cols=163  Identities=13%  Similarity=0.039  Sum_probs=105.6

Q ss_pred             CCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHH
Q 045498           35 GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS  114 (207)
Q Consensus        35 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~  114 (207)
                      ....|-...-++++.+.+..++.-+..+-.+|..-|  -+...|..++.+|..+ ..+.-..+|+++.+..+. ++..-.
T Consensus        61 ~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~R  136 (711)
T COG1747          61 KQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGR  136 (711)
T ss_pred             hccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHH
Confidence            334566677888999999999999999999998876  3677899999999888 667788899988887654 343334


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhCCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCChhhHHHHHH
Q 045498          115 LVIDGLCRVGRWEEARKKLDQLSEKGLV-----PGVVTYNILINGLCKKGMIMEADKLLVQMKEK-GCFPDSTSFNTVIQ  188 (207)
Q Consensus       115 ~li~~~~~~~~~~~a~~~~~~~~~~g~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~  188 (207)
                      .+..-|-+ ++.+.+..+|......=++     .-...|.-+...  -..+.+....+...+... |...-...+..+..
T Consensus       137 eLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~  213 (711)
T COG1747         137 ELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYK  213 (711)
T ss_pred             HHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence            44444444 7777777777766544211     011233333321  134555556655555533 33344455566666


Q ss_pred             HHHhcCchhHHHHHHH
Q 045498          189 GFLVKNETDRASSFLK  204 (207)
Q Consensus       189 ~~~~~~~~~~a~~~~~  204 (207)
                      -|....++++|.++++
T Consensus       214 ~Ys~~eN~~eai~Ilk  229 (711)
T COG1747         214 KYSENENWTEAIRILK  229 (711)
T ss_pred             HhccccCHHHHHHHHH
Confidence            6777777777777665

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=94.42  E-value=0.78  Score=39.71  Aligned_cols=83  Identities=19%  Similarity=0.205  Sum_probs=45.2

Q ss_pred             HHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHH
Q 045498           79 NPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV--VTYNILINGLC  156 (207)
Q Consensus        79 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~  156 (207)
                      .+....+.....+++|.-.|+..-+         ..-.+.+|..+|+|.+|..+..++...   .+.  .+-..|+.-+.
T Consensus       943 ~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~ 1010 (1265)
T KOG1920|consen  943 EAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLV 1010 (1265)
T ss_pred             HHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHH
Confidence            3333444455666666665554321         133456666777777777766665442   121  12255666666


Q ss_pred             hcCCHHHHHHHHHHHHH
Q 045498          157 KKGMIMEADKLLVQMKE  173 (207)
Q Consensus       157 ~~~~~~~a~~~~~~m~~  173 (207)
                      ..+++-+|-++..+...
T Consensus      1011 e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1011 EQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred             HcccchhHHHHHHHHhc
Confidence            66766666666665543

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=94.31  E-value=0.83  Score=29.21  Aligned_cols=91  Identities=15%  Similarity=0.084  Sum_probs=50.6

Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHH---HHHHhcCCC
Q 045498           49 GLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV---IDGLCRVGR  125 (207)
Q Consensus        49 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l---i~~~~~~~~  125 (207)
                      +....|+.+.|++.|.+....- +-....||.-..++.-.|+.++|+.=+++..+..-.-+...+.+.   -..|-..|+
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~  130 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN  130 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence            3455666777777776665542 344556666666666666666666666665444222233223222   234455566


Q ss_pred             HHHHHHHHHHHHhCC
Q 045498          126 WEEARKKLDQLSEKG  140 (207)
Q Consensus       126 ~~~a~~~~~~~~~~g  140 (207)
                      -+.|..=|+..-+.|
T Consensus       131 dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  131 DDAARADFEAAAQLG  145 (175)
T ss_pred             hHHHHHhHHHHHHhC
Confidence            666666666555554

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=94.22  E-value=1.2  Score=30.79  Aligned_cols=124  Identities=11%  Similarity=0.097  Sum_probs=74.0

Q ss_pred             HHhhHhhhcChhhHHHHHHHHHhCCC--CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-
Q 045498           81 LIHDNWEKQGRFSAMALLQTLERDKY--ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK-  157 (207)
Q Consensus        81 ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-  157 (207)
                      ....+...|++++|...|+.+...-.  +......-.+..++.+.|+++.|...++...+.-+.-....+...+.+.+. 
T Consensus        11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~   90 (203)
T PF13525_consen   11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY   90 (203)
T ss_dssp             HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence            33466788999999999999987632  223456667888999999999999999998876332222223222222221 


Q ss_pred             ------------cCCHHHHHHHHHHHHHcCCCCChh-h-----------------HHHHHHHHHhcCchhHHHHHHHhh
Q 045498          158 ------------KGMIMEADKLLVQMKEKGCFPDST-S-----------------FNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       158 ------------~~~~~~a~~~~~~m~~~~~~p~~~-~-----------------~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                                  .+...+|...|+.+.+.  -|+.. +                 --.+.+.|.+.|.+..|..-++.+
T Consensus        91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~~--yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v  167 (203)
T PF13525_consen   91 KQIPGILRSDRDQTSTRKAIEEFEELIKR--YPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYV  167 (203)
T ss_dssp             HHHHHHH-TT---HHHHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHH
T ss_pred             HhCccchhcccChHHHHHHHHHHHHHHHH--CcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence                        12335677788877765  23321 1                 111345566777777776666554

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=94.21  E-value=1.2  Score=30.41  Aligned_cols=164  Identities=19%  Similarity=0.031  Sum_probs=80.0

Q ss_pred             ccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHh-hHhhhcChhhHHHHHHHHHhCCC--CccHHHHH
Q 045498           38 LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH-DNWEKQGRFSAMALLQTLERDKY--ELNIEVYS  114 (207)
Q Consensus        38 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~  114 (207)
                      .....+......+...+++..+...+.........+ ......... .+...++++.+...+.+......  ......+.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  171 (291)
T COG0457          93 NLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALL  171 (291)
T ss_pred             chHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHH
Confidence            334445555555555556666666666655543222 111222222 45566666666666666543211  01223333


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhc
Q 045498          115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD-STSFNTVIQGFLVK  193 (207)
Q Consensus       115 ~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~  193 (207)
                      .....+...++.+.+...+..............+..+...+...++++.+...+......  .|+ ...+..+...+...
T Consensus       172 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  249 (291)
T COG0457         172 ALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLEL  249 (291)
T ss_pred             HhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHc
Confidence            333334555666666666666655421112445555556666666666666666665554  222 23333333333344


Q ss_pred             CchhHHHHHHH
Q 045498          194 NETDRASSFLK  204 (207)
Q Consensus       194 ~~~~~a~~~~~  204 (207)
                      +..+.+...+.
T Consensus       250 ~~~~~~~~~~~  260 (291)
T COG0457         250 GRYEEALEALE  260 (291)
T ss_pred             CCHHHHHHHHH
Confidence            45555555544

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=94.17  E-value=0.91  Score=29.09  Aligned_cols=61  Identities=16%  Similarity=0.177  Sum_probs=33.7

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498          144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK  205 (207)
Q Consensus       144 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  205 (207)
                      +....+..+......|+-++..+++.++.+. -.+++.....+..+|.+.|+..++.+++++
T Consensus        85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~  145 (161)
T PF09205_consen   85 LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKE  145 (161)
T ss_dssp             --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence            3444555566666667777777777666542 345666666666777777777776666654

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=93.94  E-value=0.094  Score=24.67  Aligned_cols=20  Identities=35%  Similarity=0.300  Sum_probs=7.9

Q ss_pred             hhhHHHHHHHHHhcCCHHHH
Q 045498          145 VVTYNILINGLCKKGMIMEA  164 (207)
Q Consensus       145 ~~~~~~li~~~~~~~~~~~a  164 (207)
                      ...|+.+...|...|++++|
T Consensus        13 ~~a~~nla~~~~~~g~~~~A   32 (34)
T PF13431_consen   13 AEAYNNLANLYLNQGDYEEA   32 (34)
T ss_pred             HHHHHHHHHHHHHCcCHHhh
Confidence            33344444444444444333

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=93.87  E-value=2.6  Score=33.30  Aligned_cols=79  Identities=13%  Similarity=0.167  Sum_probs=55.8

Q ss_pred             HHhhHhhhcChhhHHHHHHHHHhCCCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhc
Q 045498           81 LIHDNWEKQGRFSAMALLQTLERDKYE-LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGL-VPGVVTYNILINGLCKK  158 (207)
Q Consensus        81 ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~  158 (207)
                      +-.++.+.|+.++|.+.+++|.+.... -+..+...++.++...+.+.++..++.+..+... +.-...|+..+--+-..
T Consensus       265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav  344 (539)
T PF04184_consen  265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAV  344 (539)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhh
Confidence            455667789999999999999765422 2455788999999999999999999998765422 22344566554433333


Q ss_pred             C
Q 045498          159 G  159 (207)
Q Consensus       159 ~  159 (207)
                      +
T Consensus       345 ~  345 (539)
T PF04184_consen  345 G  345 (539)
T ss_pred             c
Confidence            3

The molecular function of this protein is uncertain.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=93.82  E-value=1.5  Score=30.27  Aligned_cols=81  Identities=15%  Similarity=0.045  Sum_probs=62.0

Q ss_pred             HHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCc
Q 045498          119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK---GCFPDSTSFNTVIQGFLVKNE  195 (207)
Q Consensus       119 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~~~  195 (207)
                      -..+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.+++..++.+..+.   +-.+|+..+.+|+..+-+.|+
T Consensus       116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~  193 (203)
T PF11207_consen  116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN  193 (203)
T ss_pred             HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence            3456666 778888888888776655655666666665 67889999999887754   347889999999999999999


Q ss_pred             hhHHHH
Q 045498          196 TDRASS  201 (207)
Q Consensus       196 ~~~a~~  201 (207)
                      ++.|.-
T Consensus       194 ~e~AYi  199 (203)
T PF11207_consen  194 YEQAYI  199 (203)
T ss_pred             hhhhhh
Confidence            998853

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=93.56  E-value=1.1  Score=31.42  Aligned_cols=78  Identities=21%  Similarity=0.263  Sum_probs=55.7

Q ss_pred             hHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC--CCCChhhHHHHHHH
Q 045498           77 TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG--LVPGVVTYNILING  154 (207)
Q Consensus        77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~  154 (207)
                      |.+..++.+.+.+...+++...++-.+.. +.+...-..++.-++-.|+|++|..-++..-...  ..+-...|..+|.+
T Consensus         3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~   81 (273)
T COG4455           3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC   81 (273)
T ss_pred             chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            55667778888899999999888877764 3355666778888999999999987776555432  23445667766664


Q ss_pred             H
Q 045498          155 L  155 (207)
Q Consensus       155 ~  155 (207)
                      -
T Consensus        82 e   82 (273)
T COG4455          82 E   82 (273)
T ss_pred             H
Confidence            3

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.41  E-value=0.32  Score=23.56  Aligned_cols=28  Identities=32%  Similarity=0.252  Sum_probs=19.8

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045498          146 VTYNILINGLCKKGMIMEADKLLVQMKE  173 (207)
Q Consensus       146 ~~~~~li~~~~~~~~~~~a~~~~~~m~~  173 (207)
                      .+++.|...|...|++++|..++++..+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            4667777777777888888777777654

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.38  E-value=0.3  Score=23.66  Aligned_cols=29  Identities=24%  Similarity=0.360  Sum_probs=20.1

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 045498           40 VFVYSSLINGLCTFNRLKEAVELFDKMVA   68 (207)
Q Consensus        40 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~   68 (207)
                      ..+++.|-..|...|++++|..++++...
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            34677777777777888888777777653

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.21  E-value=2.5  Score=31.01  Aligned_cols=117  Identities=18%  Similarity=0.093  Sum_probs=56.6

Q ss_pred             hHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 045498           84 DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME  163 (207)
Q Consensus        84 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~  163 (207)
                      .....++..+|..+|+........ +...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus       143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~  221 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE  221 (304)
T ss_pred             hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence            344556666666666665554322 3445555666666666666666666665543222122222222333334433333


Q ss_pred             HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHH
Q 045498          164 ADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFL  203 (207)
Q Consensus       164 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~  203 (207)
                      ...+-++.-..  +-|...-..+...+...|+.+.|.+.+
T Consensus       222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~L  259 (304)
T COG3118         222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHL  259 (304)
T ss_pred             HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            33333333332  114444445555555555555555443

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=93.11  E-value=3.1  Score=31.83  Aligned_cols=159  Identities=11%  Similarity=-0.038  Sum_probs=95.4

Q ss_pred             hhHHHHHhhhhhhhHHHHH------HcC----CCccHHhHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCcchhhHHH
Q 045498           14 VYGIRINGMCKIREIDSAI------KKG----ICLDVFVYSSLINGLCT---FNRLKEAVELFDKMVAQGITAELVTYNP   80 (207)
Q Consensus        14 ~~~~ll~~~~~~g~~~~a~------~~~----~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~   80 (207)
                      +...++-+|....+++.++      ..-    +.-++.+-....-++.+   .|+-++|++++..+......+++.+|..
T Consensus       143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL  222 (374)
T PF13281_consen  143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL  222 (374)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence            3345556688888888887      111    11122222223334445   7999999999999766666788889888


Q ss_pred             HHhhHhh---------hcChhhHHHHHHHHHhCCCCccHHH---HHHHHHHHhcC-CCHHHHHHHH----HHHHhCCC--
Q 045498           81 LIHDNWE---------KQGRFSAMALLQTLERDKYELNIEV---YSLVIDGLCRV-GRWEEARKKL----DQLSEKGL--  141 (207)
Q Consensus        81 ll~~~~~---------~~~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~-~~~~~a~~~~----~~~~~~g~--  141 (207)
                      +-..|-.         ....++|...|.+--+..  |+..+   +.+++...... ..-.+..++.    ....++|.  
T Consensus       223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~  300 (374)
T PF13281_consen  223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE  300 (374)
T ss_pred             HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence            8776643         223567888887755443  43322   22222222211 1122333333    22223333  


Q ss_pred             -CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498          142 -VPGVVTYNILINGLCKKGMIMEADKLLVQMKEK  174 (207)
Q Consensus       142 -~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  174 (207)
                       ..+--.+..++.++.-.|+.++|.+..+.|.+.
T Consensus       301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence             234445678899999999999999999999976

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=92.52  E-value=2.5  Score=29.21  Aligned_cols=78  Identities=13%  Similarity=-0.165  Sum_probs=55.2

Q ss_pred             hhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC---CCCCChhhHHHHHHHHHhcCCHH
Q 045498           86 WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK---GLVPGVVTYNILINGLCKKGMIM  162 (207)
Q Consensus        86 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~~~~~~~~~  162 (207)
                      .+.|+ +.|.+.|-.+...+.--++.....+...|. ..+.+++..++-+..+.   +-.+|+..+.+|++.+.+.|+++
T Consensus       118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e  195 (203)
T PF11207_consen  118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE  195 (203)
T ss_pred             hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence            33344 567777777777765545555555555555 66788888888776654   33678889999999999999988


Q ss_pred             HHH
Q 045498          163 EAD  165 (207)
Q Consensus       163 ~a~  165 (207)
                      .|.
T Consensus       196 ~AY  198 (203)
T PF11207_consen  196 QAY  198 (203)
T ss_pred             hhh
Confidence            875

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=92.31  E-value=3.4  Score=30.28  Aligned_cols=120  Identities=15%  Similarity=0.068  Sum_probs=83.4

Q ss_pred             CCccHHhHHHHHHHHHh-cCC-hhHHHHHHHHHHh-CCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhC-CCCccHH
Q 045498           36 ICLDVFVYSSLINGLCT-FNR-LKEAVELFDKMVA-QGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERD-KYELNIE  111 (207)
Q Consensus        36 ~~~~~~~~~~ll~~~~~-~~~-~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~  111 (207)
                      +--|..+...+++.... .+. ...--++.+-+.. .+..++..+...+|..++..+++....++++..... +..-|..
T Consensus       160 Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~r  239 (292)
T PF13929_consen  160 IIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPR  239 (292)
T ss_pred             eeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCc
Confidence            44566777777777766 222 2222233333332 345788889999999999999999999999987665 5667889


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHH-----HHhCCCCCChhhHHHHHHHH
Q 045498          112 VYSLVIDGLCRVGRWEEARKKLDQ-----LSEKGLVPGVVTYNILINGL  155 (207)
Q Consensus       112 ~~~~li~~~~~~~~~~~a~~~~~~-----~~~~g~~~~~~~~~~li~~~  155 (207)
                      .|..+|......|+..-..+++++     +.+.|+..+...-..+-+.+
T Consensus       240 pW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF  288 (292)
T PF13929_consen  240 PWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF  288 (292)
T ss_pred             hHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence            999999999999998877777663     34455555555544444443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=92.14  E-value=2.4  Score=28.14  Aligned_cols=53  Identities=19%  Similarity=0.156  Sum_probs=27.7

Q ss_pred             HHhcCChhHHHHHHHHHHhCCC-CcchhhHHHHHhhHhhhcChhhHHHHHHHHHhC
Q 045498           50 LCTFNRLKEAVELFDKMVAQGI-TAELVTYNPLIHDNWEKQGRFSAMALLQTLERD  104 (207)
Q Consensus        50 ~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~  104 (207)
                      -.+.++.+++..++.-+.-... .|...++..  ..+...|++++|.++|+++.+.
T Consensus        20 al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~--~l~i~r~~w~dA~rlLr~l~~~   73 (160)
T PF09613_consen   20 ALRLGDPDDAEALLDALRVLRPEFPELDLFDG--WLHIVRGDWDDALRLLRELEER   73 (160)
T ss_pred             HHccCChHHHHHHHHHHHHhCCCchHHHHHHH--HHHHHhCCHHHHHHHHHHHhcc
Confidence            3445666666666666654321 111222222  2355666666666666666554

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=92.07  E-value=1.7  Score=26.36  Aligned_cols=79  Identities=18%  Similarity=0.198  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHhcCCCH--HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 045498          111 EVYSLVIDGLCRVGRW--EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ  188 (207)
Q Consensus       111 ~~~~~li~~~~~~~~~--~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~  188 (207)
                      ..|+.--..|....+.  -+..+-+..+....+.|++....+.+++|.+.+++..|.++|+-.+.. +.+....|..+++
T Consensus         9 eeF~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq   87 (108)
T PF02284_consen    9 EEFDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ   87 (108)
T ss_dssp             HHHHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred             HHHHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence            3444444445444433  356666777777888999999999999999999999999999998865 3334447777766


Q ss_pred             HH
Q 045498          189 GF  190 (207)
Q Consensus       189 ~~  190 (207)
                      -.
T Consensus        88 El   89 (108)
T PF02284_consen   88 EL   89 (108)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=91.92  E-value=2.8  Score=28.45  Aligned_cols=166  Identities=19%  Similarity=0.037  Sum_probs=108.3

Q ss_pred             cHHhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHH
Q 045498           39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQ-GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI  117 (207)
Q Consensus        39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li  117 (207)
                      ....+......+...+.+..+...+...... ........+..........+....+...+.........+. .......
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  136 (291)
T COG0457          58 LAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLA  136 (291)
T ss_pred             chHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHH
Confidence            3566777777778888888888887777652 2344555666666777777778888888887776543331 2222222


Q ss_pred             H-HHhcCCCHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 045498          118 D-GLCRVGRWEEARKKLDQLSEKGL--VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN  194 (207)
Q Consensus       118 ~-~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~  194 (207)
                      . .+...|+++.+...+++......  ......+......+...++.+.+...+..............+..+...+...+
T Consensus       137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (291)
T COG0457         137 LGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG  216 (291)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence            2 67788888888888888755321  12333444444456677888888888888776522113566777777777777


Q ss_pred             chhHHHHHHHh
Q 045498          195 ETDRASSFLKK  205 (207)
Q Consensus       195 ~~~~a~~~~~~  205 (207)
                      +++.+...+..
T Consensus       217 ~~~~a~~~~~~  227 (291)
T COG0457         217 KYEEALEYYEK  227 (291)
T ss_pred             cHHHHHHHHHH
Confidence            77777777654

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.91  E-value=2.8  Score=28.39  Aligned_cols=141  Identities=15%  Similarity=0.103  Sum_probs=91.3

Q ss_pred             CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchh-hHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHH-HHH
Q 045498           37 CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELV-TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE-VYS  114 (207)
Q Consensus        37 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~  114 (207)
                      ..+...|..-+.. .+.++.++|+.-|.++.+.|..-=+. .--..-......|+...|...|++.-.....|-.. -..
T Consensus        56 s~sgd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~A  134 (221)
T COG4649          56 SKSGDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLA  134 (221)
T ss_pred             ccchHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHH
Confidence            3345566665554 46788899999999998876431111 11112234567788888999999887765444432 112


Q ss_pred             HHH--HHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 045498          115 LVI--DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP  178 (207)
Q Consensus       115 ~li--~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p  178 (207)
                      -+=  -.+...|.++.+..-++-+-..|-+.....-..|--+-.+.|++.+|.+.|..+......|
T Consensus       135 Rlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap  200 (221)
T COG4649         135 RLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP  200 (221)
T ss_pred             HHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence            222  2346778888888888877766544444555667777778999999999999887654444

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.75  E-value=0.7  Score=21.24  Aligned_cols=29  Identities=21%  Similarity=0.333  Sum_probs=20.1

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 045498           41 FVYSSLINGLCTFNRLKEAVELFDKMVAQ   69 (207)
Q Consensus        41 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~   69 (207)
                      .+|..+..++...|++++|+..|++..+.
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            35667777777777777777777777654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.74  E-value=0.7  Score=21.24  Aligned_cols=27  Identities=26%  Similarity=0.144  Sum_probs=13.4

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045498          147 TYNILINGLCKKGMIMEADKLLVQMKE  173 (207)
Q Consensus       147 ~~~~li~~~~~~~~~~~a~~~~~~m~~  173 (207)
                      +|..+...|...|++++|...|++..+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            344455555555555555555555444

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=91.70  E-value=2.8  Score=29.48  Aligned_cols=77  Identities=17%  Similarity=0.076  Sum_probs=54.0

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCC--CCccHHHHHHHHHH
Q 045498           42 VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK--YELNIEVYSLVIDG  119 (207)
Q Consensus        42 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~  119 (207)
                      |.+.-++.+.+.+...+++...++-.+.+ +.|..+-..++..++-.|++++|..-++-.-+..  ..+-..+|..+|.+
T Consensus         3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~   81 (273)
T COG4455           3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC   81 (273)
T ss_pred             chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            34556677778888888888888777764 4556667778888888899988887776654432  23345667776665

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=91.67  E-value=2.4  Score=34.75  Aligned_cols=58  Identities=21%  Similarity=0.245  Sum_probs=36.1

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhCCCCCChh-----------hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498          115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV-----------TYNILINGLCKKGMIMEADKLLVQMKEK  174 (207)
Q Consensus       115 ~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-----------~~~~li~~~~~~~~~~~a~~~~~~m~~~  174 (207)
                      .++......++|.+|+.+-+...+.  .||+.           -|...-.+|-+.|+-.+|..+++++-..
T Consensus       778 siVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn  846 (1081)
T KOG1538|consen  778 SLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN  846 (1081)
T ss_pred             HHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence            4556666777778887777766554  33321           2344446667777777777777776554

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=91.58  E-value=2.5  Score=27.17  Aligned_cols=91  Identities=15%  Similarity=-0.097  Sum_probs=68.5

Q ss_pred             hHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHH---HHHHHHhcCC
Q 045498           84 DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI---LINGLCKKGM  160 (207)
Q Consensus        84 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~---li~~~~~~~~  160 (207)
                      +....|+.+.|++.|.+....- +-....||.-..++--.|+.++|.+=+.+..+.--.-+.....+   --..|...|+
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~  130 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN  130 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence            5678899999999999887764 33778999999999999999999998888776522213333333   3345667889


Q ss_pred             HHHHHHHHHHHHHcC
Q 045498          161 IMEADKLLVQMKEKG  175 (207)
Q Consensus       161 ~~~a~~~~~~m~~~~  175 (207)
                      .+.|..=|+..-+.|
T Consensus       131 dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  131 DDAARADFEAAAQLG  145 (175)
T ss_pred             hHHHHHhHHHHHHhC
Confidence            999999888877665

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=91.58  E-value=2.6  Score=27.46  Aligned_cols=81  Identities=11%  Similarity=0.155  Sum_probs=41.7

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHhCCC-----CCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCChhhHHHH
Q 045498          113 YSLVIDGLCRVGRWEEARKKLDQLSEKGL-----VPGVVTYNILINGLCKKGM-IMEADKLLVQMKEKGCFPDSTSFNTV  186 (207)
Q Consensus       113 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~-----~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l  186 (207)
                      .+.++...+..++......+++.+.....     ..+...|++++.+..+..- ---+..+|..|++.+.++++.-|..+
T Consensus        42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l  121 (145)
T PF13762_consen   42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL  121 (145)
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            34445444555555555555544422100     1244456666666655444 23445556666655566666666666


Q ss_pred             HHHHHhc
Q 045498          187 IQGFLVK  193 (207)
Q Consensus       187 ~~~~~~~  193 (207)
                      +.++.+.
T Consensus       122 i~~~l~g  128 (145)
T PF13762_consen  122 IKAALRG  128 (145)
T ss_pred             HHHHHcC
Confidence            6665554

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=91.56  E-value=4.2  Score=29.77  Aligned_cols=126  Identities=14%  Similarity=0.059  Sum_probs=68.2

Q ss_pred             cC-ChhHHHHHHHHHHhC--------CCCcch-----hhHHHHHhhHhhhcChh---hHHHHHHHHHhCCCCccHHHHHH
Q 045498           53 FN-RLKEAVELFDKMVAQ--------GITAEL-----VTYNPLIHDNWEKQGRF---SAMALLQTLERDKYELNIEVYSL  115 (207)
Q Consensus        53 ~~-~~~~a~~~~~~m~~~--------~~~~~~-----~~~~~ll~~~~~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~  115 (207)
                      .+ +++.|...+++..+.        ...|+.     .++..+..++...+..+   +|..+++.+.... +-...++..
T Consensus        48 ~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L  126 (278)
T PF08631_consen   48 KKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLL  126 (278)
T ss_pred             cCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHH
Confidence            45 777777777765432        112222     34566666666666544   3555555554332 212445555


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH---HhcCCHHHHHHHHHHHHHcCCCCChh
Q 045498          116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL---CKKGMIMEADKLLVQMKEKGCFPDST  181 (207)
Q Consensus       116 li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~---~~~~~~~~a~~~~~~m~~~~~~p~~~  181 (207)
                      -+..+.+.++.+.+.+++.+|...- ......+..++..+   .. .....+...+..+....+.|...
T Consensus       127 ~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~  193 (278)
T PF08631_consen  127 KLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSED  193 (278)
T ss_pred             HHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCChh
Confidence            5666666777777777777777652 11334444444444   32 23355666666665555555543

It is also involved in sporulation [].

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.25  E-value=1.7  Score=35.96  Aligned_cols=119  Identities=12%  Similarity=0.077  Sum_probs=91.1

Q ss_pred             HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHH
Q 045498           33 KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV  112 (207)
Q Consensus        33 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~  112 (207)
                      +.|....--+.+--+..+...|+-.+|.++-.+.+    -||...|-.-+.+++..++|++.+++-+..+      .+.-
T Consensus       677 q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIG  746 (829)
T KOG2280|consen  677 QFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIG  746 (829)
T ss_pred             HhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCC
Confidence            45555556667777888888999999988877664    4788899999999999999998766655433      2456


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 045498          113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ  170 (207)
Q Consensus       113 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  170 (207)
                      |.-++.+|.+.|+.++|.+.+-+....         .-...+|.+.|++.+|.++--+
T Consensus       747 y~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A~~  795 (829)
T KOG2280|consen  747 YLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLAAE  795 (829)
T ss_pred             chhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHHHH
Confidence            788899999999999999887654322         1677888899998888776543

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=91.18  E-value=4.6  Score=29.56  Aligned_cols=161  Identities=11%  Similarity=0.065  Sum_probs=95.4

Q ss_pred             HhHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHH
Q 045498           41 FVYSSLINGLCTFNRLK---EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI  117 (207)
Q Consensus        41 ~~~~~ll~~~~~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li  117 (207)
                      .++..++.++...+..+   +|..+++.+.+.. +-.+.++-.-++.+.+.++.+++.+++.+|...- ......+..++
T Consensus        85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l  162 (278)
T PF08631_consen   85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL  162 (278)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence            56777888888877655   4556666665442 3335667677888888899999999999998763 22334555555


Q ss_pred             HHH---hcCCCHHHHHHHHHHHHhCCCCCChh-hHH-HHH-HHHH--hcC------CHHHHHHHHHHHHHc-CCCCChhh
Q 045498          118 DGL---CRVGRWEEARKKLDQLSEKGLVPGVV-TYN-ILI-NGLC--KKG------MIMEADKLLVQMKEK-GCFPDSTS  182 (207)
Q Consensus       118 ~~~---~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~-~li-~~~~--~~~------~~~~a~~~~~~m~~~-~~~p~~~~  182 (207)
                      ..+   ... ....|...++.+....+.|... ... .++ ..+.  +.+      ..+....+++...+. +.+.+..+
T Consensus       163 ~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~  241 (278)
T PF08631_consen  163 HHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA  241 (278)
T ss_pred             HHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence            554   333 3456777777666655555553 111 111 1111  211      145555556644332 33445444


Q ss_pred             HHHH-------HHHHHhcCchhHHHHHHH
Q 045498          183 FNTV-------IQGFLVKNETDRASSFLK  204 (207)
Q Consensus       183 ~~~l-------~~~~~~~~~~~~a~~~~~  204 (207)
                      -.++       ...+-+.++++.|.++++
T Consensus       242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~  270 (278)
T PF08631_consen  242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYE  270 (278)
T ss_pred             HHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence            3333       233557889999999987

It is also involved in sporulation [].

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=91.14  E-value=5.1  Score=31.76  Aligned_cols=87  Identities=8%  Similarity=-0.009  Sum_probs=40.9

Q ss_pred             HhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 045498           85 NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA  164 (207)
Q Consensus        85 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a  164 (207)
                      +...|.++.+...+....+. +.....+...+++...+.|++++|..+-+-|....+. +...........-+.|-++++
T Consensus       333 ~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~  410 (831)
T PRK15180        333 FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKS  410 (831)
T ss_pred             HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHH
Confidence            34445555555554443322 1223344555555555555555555555555554443 333333333333344455555


Q ss_pred             HHHHHHHHH
Q 045498          165 DKLLVQMKE  173 (207)
Q Consensus       165 ~~~~~~m~~  173 (207)
                      .-.++++..
T Consensus       411 ~~~wk~~~~  419 (831)
T PRK15180        411 YHYWKRVLL  419 (831)
T ss_pred             HHHHHHHhc
Confidence            555555443

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.08  E-value=5.3  Score=30.12  Aligned_cols=136  Identities=7%  Similarity=-0.121  Sum_probs=88.9

Q ss_pred             CCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHH
Q 045498           35 GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ---GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIE  111 (207)
Q Consensus        35 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~  111 (207)
                      ..+.|..++...=++|.-.|+-+.....+++....   ++|.........--++...|-+++|.+.-++..+.+ +.|..
T Consensus       132 d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN-~~D~W  210 (491)
T KOG2610|consen  132 DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQIN-RFDCW  210 (491)
T ss_pred             hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCC-CcchH
Confidence            34445566666667777888888888888887643   334344445555556667888899988888877765 44666


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHhCCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045498          112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGL---VPGVVTYNILINGLCKKGMIMEADKLLVQM  171 (207)
Q Consensus       112 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  171 (207)
                      .-.+....+-..|+..++.++..+-...--   -.-.+-|=...-.+...+.++.|+++|++=
T Consensus       211 a~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e  273 (491)
T KOG2610|consen  211 ASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE  273 (491)
T ss_pred             HHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence            777777788888888988888765443211   011122223333445668889999988753

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=91.06  E-value=4.4  Score=32.11  Aligned_cols=86  Identities=8%  Similarity=0.020  Sum_probs=42.7

Q ss_pred             hcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHH
Q 045498           52 TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARK  131 (207)
Q Consensus        52 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  131 (207)
                      ..|+++.+.+.+....+. +.....+..+++...-+.|++++|..+-..|....++ +..+.......--..|-++++.-
T Consensus       335 ~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~  412 (831)
T PRK15180        335 HLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYH  412 (831)
T ss_pred             HhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHH
Confidence            445555555555444322 1223345555666666666666666666655555444 33333333223333444555555


Q ss_pred             HHHHHHhC
Q 045498          132 KLDQLSEK  139 (207)
Q Consensus       132 ~~~~~~~~  139 (207)
                      .|++....
T Consensus       413 ~wk~~~~~  420 (831)
T PRK15180        413 YWKRVLLL  420 (831)
T ss_pred             HHHHHhcc
Confidence            55555544

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=91.01  E-value=0.52  Score=20.45  Aligned_cols=20  Identities=20%  Similarity=0.511  Sum_probs=10.3

Q ss_pred             HHHHHHHhcCchhHHHHHHH
Q 045498          185 TVIQGFLVKNETDRASSFLK  204 (207)
Q Consensus       185 ~l~~~~~~~~~~~~a~~~~~  204 (207)
                      .+...+...|++++|..+++
T Consensus         6 ~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    6 ALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHcCCHHHHHHHHh
Confidence            34445555555555555543

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=90.61  E-value=5.2  Score=29.22  Aligned_cols=89  Identities=12%  Similarity=0.007  Sum_probs=57.2

Q ss_pred             HHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh--
Q 045498           80 PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK--  157 (207)
Q Consensus        80 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--  157 (207)
                      .=|.+++..++|.++....-+--+.--+.-..+...-|--|.|.++...+.++-..-....-.-+...|..++..|..  
T Consensus        88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V  167 (309)
T PF07163_consen   88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV  167 (309)
T ss_pred             hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence            346777888888887765544333222222334555566788888888888888776665333345567777766654  


Q ss_pred             ---cCCHHHHHHHH
Q 045498          158 ---KGMIMEADKLL  168 (207)
Q Consensus       158 ---~~~~~~a~~~~  168 (207)
                         .|.+++|+++.
T Consensus       168 LlPLG~~~eAeelv  181 (309)
T PF07163_consen  168 LLPLGHFSEAEELV  181 (309)
T ss_pred             HhccccHHHHHHHH
Confidence               48888888876

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>PHA02875 ankyrin repeat protein; Provisional

Probab=90.51  E-value=3.3  Score=32.07  Aligned_cols=59  Identities=22%  Similarity=0.179  Sum_probs=27.7

Q ss_pred             ccccccchhh--hHHHHHhhhhhhhHHHHH---HcCCCccHH--hHHHHHHHHHhcCChhHHHHHH
Q 045498            5 EQRFKGNFHV--YGIRINGMCKIREIDSAI---KKGICLDVF--VYSSLINGLCTFNRLKEAVELF   63 (207)
Q Consensus         5 ~~~~~p~~~~--~~~ll~~~~~~g~~~~a~---~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~   63 (207)
                      +.|..|+...  ..+.+...+..|+.+-+.   +.|..|+..  ....-+...+..|+.+.+..++
T Consensus        23 ~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll   88 (413)
T PHA02875         23 DIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELL   88 (413)
T ss_pred             HCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHH
Confidence            4555555432  233344445556665544   555544422  1122344445566665544444

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=90.40  E-value=3.8  Score=27.22  Aligned_cols=117  Identities=20%  Similarity=0.204  Sum_probs=67.9

Q ss_pred             hhHHHHHh---hHhhhcChhhHHHHHHHHHhCCCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 045498           76 VTYNPLIH---DNWEKQGRFSAMALLQTLERDKYE-LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL  151 (207)
Q Consensus        76 ~~~~~ll~---~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l  151 (207)
                      .+.+.||.   .-.+.++.+++..++.-+.-.... |...++...  .+.+.|+|.+|.++++.+....  |.......|
T Consensus         8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kAL   83 (160)
T PF09613_consen    8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEERA--PGFPYAKAL   83 (160)
T ss_pred             HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhccC--CCChHHHHH
Confidence            34444444   445677889999999988765322 223344433  4678899999999999988763  444455556


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHH
Q 045498          152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA  199 (207)
Q Consensus       152 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a  199 (207)
                      +..|.....-..=...-+++.+.+-.|+.   ..|++.+....+...|
T Consensus        84 lA~CL~~~~D~~Wr~~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a  128 (160)
T PF09613_consen   84 LALCLYALGDPSWRRYADEVLESGADPDA---RALVRALLARADLEPA  128 (160)
T ss_pred             HHHHHHHcCChHHHHHHHHHHhcCCChHH---HHHHHHHHHhccccch
Confidence            55554443323233334445665433333   3355555555444443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.34  E-value=8.8  Score=31.37  Aligned_cols=131  Identities=13%  Similarity=-0.025  Sum_probs=74.5

Q ss_pred             hHHHHHhhhhhhhHHHHHHcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhH
Q 045498           15 YGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA   94 (207)
Q Consensus        15 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a   94 (207)
                      -+.+...+.+.|-.++|+.-...|+.     -.....+.|+.+.|.++..+..      +..-|..|-.+...++++..|
T Consensus       617 rt~va~Fle~~g~~e~AL~~s~D~d~-----rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA  685 (794)
T KOG0276|consen  617 RTKVAHFLESQGMKEQALELSTDPDQ-----RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLA  685 (794)
T ss_pred             hhhHHhHhhhccchHhhhhcCCChhh-----hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhH
Confidence            34444555555555555544433332     1223335566666655544432      345677777777777777777


Q ss_pred             HHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045498           95 MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM  171 (207)
Q Consensus        95 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  171 (207)
                      .+.|....         -|..|+-.+...|+.+....+-....+.|.      .|...-+|...|+++++.+++..-
T Consensus       686 ~EC~~~a~---------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t  747 (794)
T KOG0276|consen  686 SECFLRAR---------DLGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIST  747 (794)
T ss_pred             HHHHHhhc---------chhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence            77776433         245556666666666666666666555553      233444556677888777776543

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=90.24  E-value=0.96  Score=20.40  Aligned_cols=24  Identities=21%  Similarity=0.169  Sum_probs=13.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHc
Q 045498          151 LINGLCKKGMIMEADKLLVQMKEK  174 (207)
Q Consensus       151 li~~~~~~~~~~~a~~~~~~m~~~  174 (207)
                      +..++.+.|++++|.+.|+++.+.
T Consensus         6 ~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    6 LARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHH
Confidence            344455556666666666655544

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.18  E-value=1  Score=20.48  Aligned_cols=28  Identities=21%  Similarity=0.354  Sum_probs=18.5

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 045498           42 VYSSLINGLCTFNRLKEAVELFDKMVAQ   69 (207)
Q Consensus        42 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~   69 (207)
                      .|..+-..+.+.|++++|++.|++..+.
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            4556666777777777777777776654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=89.90  E-value=1.1  Score=20.38  Aligned_cols=26  Identities=19%  Similarity=0.119  Sum_probs=11.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045498          148 YNILINGLCKKGMIMEADKLLVQMKE  173 (207)
Q Consensus       148 ~~~li~~~~~~~~~~~a~~~~~~m~~  173 (207)
                      +..+-..+.+.|++++|.+.|++..+
T Consensus         4 ~~~lg~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    4 WYYLGQAYYQLGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            33444444455555555555554443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=89.81  E-value=1.4  Score=33.91  Aligned_cols=129  Identities=12%  Similarity=-0.056  Sum_probs=90.6

Q ss_pred             hHHHHHhhHhhhcChhhHHHHHHHHH----hCCCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----CCC-CCChh
Q 045498           77 TYNPLIHDNWEKQGRFSAMALLQTLE----RDKYE-LNIEVYSLVIDGLCRVGRWEEARKKLDQLSE----KGL-VPGVV  146 (207)
Q Consensus        77 ~~~~ll~~~~~~~~~~~a~~~~~~m~----~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~g~-~~~~~  146 (207)
                      .|..|-+.|.-.|+++.|+...+.-.    +.|-. .....+..+-.++.-.|+++.|.+.|+.-..    .|- .....
T Consensus       197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ  276 (639)
T KOG1130|consen  197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ  276 (639)
T ss_pred             hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence            35556666677788888877665432    22322 2345778888889999999999998876432    222 22455


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498          147 TYNILINGLCKKGMIMEADKLLVQMKEK-----GCFPDSTSFNTVIQGFLVKNETDRASSFLKK  205 (207)
Q Consensus       147 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  205 (207)
                      ...+|-..|.-..++++|..++.+-..-     ...-...++.+|..+|...|..++|+.+.+.
T Consensus       277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~  340 (639)
T KOG1130|consen  277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL  340 (639)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            6777888888888889999888764321     2234567899999999999999999887654

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=89.63  E-value=6  Score=28.44  Aligned_cols=166  Identities=14%  Similarity=0.125  Sum_probs=105.8

Q ss_pred             hhhhHHHHHhhhhhhhHHHHH------HcC---CCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHH
Q 045498           12 FHVYGIRINGMCKIREIDSAI------KKG---ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI   82 (207)
Q Consensus        12 ~~~~~~ll~~~~~~g~~~~a~------~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll   82 (207)
                      ...|+..+.. .+.|++++|.      .+.   -+....+--.++.++.+.++++.|+..+++..+....-...-|-.-|
T Consensus        35 ~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl  113 (254)
T COG4105          35 SELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL  113 (254)
T ss_pred             HHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence            3445554443 4678888887      222   23345666677888899999999999999988764332334555555


Q ss_pred             hhHhhh-------cChh---hHHHHHHHHHhC----CCCccHHHH------------HHHHHHHhcCCCHHHHHHHHHHH
Q 045498           83 HDNWEK-------QGRF---SAMALLQTLERD----KYELNIEVY------------SLVIDGLCRVGRWEEARKKLDQL  136 (207)
Q Consensus        83 ~~~~~~-------~~~~---~a~~~~~~m~~~----~~~~~~~~~------------~~li~~~~~~~~~~~a~~~~~~~  136 (207)
                      .+.+.-       .+..   .|..-|+++..+    ...||...-            ..+.+-|.+.|.+..|..-+++|
T Consensus       114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v  193 (254)
T COG4105         114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEV  193 (254)
T ss_pred             HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence            555432       2222   244444444433    223332211            23456788999999999999999


Q ss_pred             HhCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 045498          137 SEKGLVPG---VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST  181 (207)
Q Consensus       137 ~~~g~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~  181 (207)
                      .+. ..-+   ....-.+..+|.+.|-.++|.+.-+-+..+  .|+..
T Consensus       194 ~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N--~p~s~  238 (254)
T COG4105         194 LEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN--YPDSQ  238 (254)
T ss_pred             Hhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc--CCCCc
Confidence            887 2222   345666779999999999999988887766  44443

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=89.62  E-value=7.2  Score=29.30  Aligned_cols=184  Identities=10%  Similarity=0.006  Sum_probs=94.8

Q ss_pred             HHHhhhhhhhHHHHH-----HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC---C-CcchhhHHHHHhhHhhh
Q 045498           18 RINGMCKIREIDSAI-----KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG---I-TAELVTYNPLIHDNWEK   88 (207)
Q Consensus        18 ll~~~~~~g~~~~a~-----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~-~~~~~~~~~ll~~~~~~   88 (207)
                      ...+..+.|+|+...     .....++...|.++...  +.++++++....+.....-   . ......|........+.
T Consensus         4 ~~eaaWrl~~Wd~l~~~~~~~~~~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~l   81 (352)
T PF02259_consen    4 AAEAAWRLGDWDLLEEYLSQSNEDSPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKL   81 (352)
T ss_pred             HHHHHHhcCChhhHHHHHhhccCCChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            356777888888765     22223455566666555  7889998888887775431   0 11122333333333333


Q ss_pred             cChhhHHHHHHHHHhCCC-Ccc----HHHHHHHHHHHhcCCC---HHHHHHHHHHHHh--CCCCCChhhHHHHHHHHHhc
Q 045498           89 QGRFSAMALLQTLERDKY-ELN----IEVYSLVIDGLCRVGR---WEEARKKLDQLSE--KGLVPGVVTYNILINGLCKK  158 (207)
Q Consensus        89 ~~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~~~---~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~  158 (207)
                      ....+..++.+-...... ..+    ...|..-+...  ..+   ++....+-..+.+  ........+|..++..+.+.
T Consensus        82 q~L~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~--~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~  159 (352)
T PF02259_consen   82 QQLVELEEIIELKSNLSQNPQDLKSLLKRWRSRLPNM--QDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKA  159 (352)
T ss_pred             hHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHC
Confidence            333333332222211100 000    11222222221  122   2222222222222  11233556788888888899


Q ss_pred             CCHHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498          159 GMIMEADKLLVQMKEKGCFP---DSTSFNTVIQGFLVKNETDRASSFLKK  205 (207)
Q Consensus       159 ~~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~  205 (207)
                      |+++.|...+..+...+..+   ++.....-.+..-..|+.++|...+++
T Consensus       160 g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~  209 (352)
T PF02259_consen  160 GNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRE  209 (352)
T ss_pred             CCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999999998888754221   334444456666777888888877765

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=89.61  E-value=6.5  Score=28.77  Aligned_cols=91  Identities=14%  Similarity=0.088  Sum_probs=64.7

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHh-
Q 045498           43 YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC-  121 (207)
Q Consensus        43 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-  121 (207)
                      ...=|.+++..++|.+++...-+-...--+....+....|-.|.+.+++..+.++-..-.+..-.-+...|.++..-|. 
T Consensus        86 cvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl  165 (309)
T PF07163_consen   86 CVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL  165 (309)
T ss_pred             hhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence            3445788999999999988776665543333445677777789999999998888876554422223345777766654 


Q ss_pred             ----cCCCHHHHHHHH
Q 045498          122 ----RVGRWEEARKKL  133 (207)
Q Consensus       122 ----~~~~~~~a~~~~  133 (207)
                          =.|.+++|+++.
T Consensus       166 ~VLlPLG~~~eAeelv  181 (309)
T PF07163_consen  166 HVLLPLGHFSEAEELV  181 (309)
T ss_pred             HHHhccccHHHHHHHH
Confidence                469999999888

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=89.47  E-value=8.9  Score=30.18  Aligned_cols=119  Identities=16%  Similarity=0.121  Sum_probs=77.4

Q ss_pred             hHhhhcC-hhhHHHHHHHHHhCCCCccHHHHHHHHH-----HHh---cCCCHHHHHHHHHHHHhCCCCCChh----hHHH
Q 045498           84 DNWEKQG-RFSAMALLQTLERDKYELNIEVYSLVID-----GLC---RVGRWEEARKKLDQLSEKGLVPGVV----TYNI  150 (207)
Q Consensus        84 ~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~li~-----~~~---~~~~~~~a~~~~~~~~~~g~~~~~~----~~~~  150 (207)
                      -+.+.|. -++|..+++...+-.  +....+...+-     +|.   ....+.+-.++-+-+.+.|++|-..    .-|.
T Consensus       388 ~lW~~g~~dekalnLLk~il~ft--~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~  465 (549)
T PF07079_consen  388 HLWEIGQCDEKALNLLKLILQFT--NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANF  465 (549)
T ss_pred             HHHhcCCccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHH
Confidence            3445555 677888888877642  22222222222     221   2234555555666667778876543    3444


Q ss_pred             HHH--HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          151 LIN--GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       151 li~--~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      |..  -+...|++.++...-..+.+  +.|++.+|..+.-++....++++|..++.+.
T Consensus       466 LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  466 LADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            432  33567899988877766655  6899999999999999999999999998753

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=89.32  E-value=4.4  Score=26.44  Aligned_cols=96  Identities=10%  Similarity=0.067  Sum_probs=62.9

Q ss_pred             HhCCCCcch--hhHHHHHhhHhhhcChhhHHHHHHHHHhCCC-----CccHHHHHHHHHHHhcCCC-HHHHHHHHHHHHh
Q 045498           67 VAQGITAEL--VTYNPLIHDNWEKQGRFSAMALLQTLERDKY-----ELNIEVYSLVIDGLCRVGR-WEEARKKLDQLSE  138 (207)
Q Consensus        67 ~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-----~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~  138 (207)
                      .+.+..++.  ...++++......+++.....+++.+.....     ..+...|++++.+.++... ---+..+|..+.+
T Consensus        29 ~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~  108 (145)
T PF13762_consen   29 QEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK  108 (145)
T ss_pred             hhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence            333444443  3457777777777777777777776632211     2355678888888876666 4446677788887


Q ss_pred             CCCCCChhhHHHHHHHHHhcCCHH
Q 045498          139 KGLVPGVVTYNILINGLCKKGMIM  162 (207)
Q Consensus       139 ~g~~~~~~~~~~li~~~~~~~~~~  162 (207)
                      .+..++..-|..++.++.+....+
T Consensus       109 ~~~~~t~~dy~~li~~~l~g~~~~  132 (145)
T PF13762_consen  109 NDIEFTPSDYSCLIKAALRGYFHD  132 (145)
T ss_pred             cCCCCCHHHHHHHHHHHHcCCCCc
Confidence            778888888888888876654333

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=89.31  E-value=1.2  Score=22.45  Aligned_cols=20  Identities=25%  Similarity=0.403  Sum_probs=8.6

Q ss_pred             HHHhcCCCHHHHHHHHHHHH
Q 045498          118 DGLCRVGRWEEARKKLDQLS  137 (207)
Q Consensus       118 ~~~~~~~~~~~a~~~~~~~~  137 (207)
                      .+|...|+.+.|.+++++..
T Consensus         7 ~ayie~Gd~e~Ar~lL~evl   26 (44)
T TIGR03504         7 RAYIEMGDLEGARELLEEVI   26 (44)
T ss_pred             HHHHHcCChHHHHHHHHHHH
Confidence            34444444444444444444

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=89.27  E-value=1.2  Score=22.36  Aligned_cols=26  Identities=27%  Similarity=0.316  Sum_probs=22.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045498          150 ILINGLCKKGMIMEADKLLVQMKEKG  175 (207)
Q Consensus       150 ~li~~~~~~~~~~~a~~~~~~m~~~~  175 (207)
                      .|..+|...|+.+.|..++++....|
T Consensus         4 dLA~ayie~Gd~e~Ar~lL~evl~~~   29 (44)
T TIGR03504         4 DLARAYIEMGDLEGARELLEEVIEEG   29 (44)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence            46788999999999999999988654

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=89.06  E-value=2.4  Score=24.40  Aligned_cols=46  Identities=17%  Similarity=0.028  Sum_probs=25.8

Q ss_pred             cCCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHH
Q 045498          122 RVGRWEEARKKLDQLSEKGLVPG--VVTYNILINGLCKKGMIMEADKL  167 (207)
Q Consensus       122 ~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~~~~~~a~~~  167 (207)
                      ..++-+.|...|+...+.-..|.  ..++..++.+|+..|++.+++.+
T Consensus        18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f   65 (80)
T PF10579_consen   18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF   65 (80)
T ss_pred             ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556666666666655533222  23455566666666666665554

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]

Probab=88.90  E-value=4.3  Score=26.51  Aligned_cols=62  Identities=15%  Similarity=0.200  Sum_probs=36.0

Q ss_pred             HHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCC
Q 045498           62 LFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG  124 (207)
Q Consensus        62 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~  124 (207)
                      +.+.+++.|.++++ -=..++..+...++.-.|..+++++.+.+...+..|....+..+...|
T Consensus         8 ~~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G   69 (145)
T COG0735           8 AIERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG   69 (145)
T ss_pred             HHHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence            44455556655553 233455555666666677777777777666655555555555555544

>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B

Probab=88.80  E-value=1.3  Score=24.13  Aligned_cols=47  Identities=21%  Similarity=0.297  Sum_probs=26.5

Q ss_pred             CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045498          125 RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE  173 (207)
Q Consensus       125 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  173 (207)
                      .++...++++.++..  +-|..---.+|.++...|++++|.++++++.+
T Consensus         5 ~~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~   51 (62)
T PF14689_consen    5 QLEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK   51 (62)
T ss_dssp             -HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            344555555555443  12333344567777777777777777776654

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.71  E-value=14  Score=31.43  Aligned_cols=151  Identities=18%  Similarity=0.078  Sum_probs=99.0

Q ss_pred             cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcch--hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHH
Q 045498           39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL--VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV  116 (207)
Q Consensus        39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  116 (207)
                      .......-++...+...+.-|+.+-+.   .+..++.  ......-..+.+.|++++|..-|-+-... ++|     ..+
T Consensus       333 ~ek~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~V  403 (933)
T KOG2114|consen  333 IEKDLETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEV  403 (933)
T ss_pred             eeccHHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHH
Confidence            344456667777778888887776543   3332221  22333334556789999998888765543 233     234


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCch
Q 045498          117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNET  196 (207)
Q Consensus       117 i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~  196 (207)
                      |.-|....+...-...++.+.+.|+. +...-+.|+.+|.+.++.++..++.+... .|...  .-....+..+.+.+-.
T Consensus       404 i~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~--fd~e~al~Ilr~snyl  479 (933)
T KOG2114|consen  404 IKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWF--FDVETALEILRKSNYL  479 (933)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Cccee--eeHHHHHHHHHHhChH
Confidence            55666667777788888999999987 88888999999999999998888877654 33321  1134455556666666


Q ss_pred             hHHHHH
Q 045498          197 DRASSF  202 (207)
Q Consensus       197 ~~a~~~  202 (207)
                      ++|..+
T Consensus       480 ~~a~~L  485 (933)
T KOG2114|consen  480 DEAELL  485 (933)
T ss_pred             HHHHHH
Confidence            666544

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=88.40  E-value=3.9  Score=24.63  Aligned_cols=77  Identities=17%  Similarity=0.180  Sum_probs=55.9

Q ss_pred             HHHHHHHHHhcCC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 045498          112 VYSLVIDGLCRVG--RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG  189 (207)
Q Consensus       112 ~~~~li~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~  189 (207)
                      -|++--..|...-  +.-++.+-+..+....+.|++....+.+++|-+.+++..|.++|+-.+.. +..+...|..+++-
T Consensus         7 eF~aRye~~F~~~~iD~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lqe   85 (103)
T cd00923           7 EFDARYETYFNRPDIDGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQE   85 (103)
T ss_pred             HHHHHHHHHhCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHHH
Confidence            3444433444333  45567777777888888999999999999999999999999999988744 22245567666654

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]

Probab=88.30  E-value=4.8  Score=25.59  Aligned_cols=47  Identities=17%  Similarity=0.150  Sum_probs=33.1

Q ss_pred             hHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 045498           93 SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK  139 (207)
Q Consensus        93 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  139 (207)
                      +..+-+..+...++.|+..+....++++-+.+++..|.++++-++.+
T Consensus        67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K  113 (149)
T KOG4077|consen   67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK  113 (149)
T ss_pred             HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            45556666666677777777777777777777777777777766654

>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF

Probab=87.97  E-value=0.67  Score=29.57  Aligned_cols=29  Identities=21%  Similarity=0.519  Sum_probs=15.8

Q ss_pred             CChhHHHHHHHHHHhCCCCcchhhHHHHHhh
Q 045498           54 NRLKEAVELFDKMVAQGITAELVTYNPLIHD   84 (207)
Q Consensus        54 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~   84 (207)
                      |.-..|-.+|..|+++|-+||  .|+.|+..
T Consensus       109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~~  137 (140)
T PF11663_consen  109 GSKTDAYAVFRKMLERGNPPD--DWDALLKE  137 (140)
T ss_pred             ccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence            344445566666666665555  35555543

The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=87.93  E-value=3.7  Score=28.11  Aligned_cols=53  Identities=15%  Similarity=0.006  Sum_probs=35.9

Q ss_pred             cCCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498          122 RVGRWEEARKKLDQLSEK-GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK  174 (207)
Q Consensus       122 ~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  174 (207)
                      ..++.+......+...+. ...|+...|..++..+...|+.++|.....++...
T Consensus       120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l  173 (193)
T PF11846_consen  120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL  173 (193)
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            555555444444433322 23678888888888888888888888888887765

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>PRK11906 transcriptional regulator; Provisional

Probab=87.66  E-value=12  Score=29.49  Aligned_cols=158  Identities=11%  Similarity=0.068  Sum_probs=96.0

Q ss_pred             HhH--HHHHHHHHhcC-----ChhHHHHHHHHHHh-CCCCcch-hhHHHHHhhHhh---------hcChhhHHHHHHHHH
Q 045498           41 FVY--SSLINGLCTFN-----RLKEAVELFDKMVA-QGITAEL-VTYNPLIHDNWE---------KQGRFSAMALLQTLE  102 (207)
Q Consensus        41 ~~~--~~ll~~~~~~~-----~~~~a~~~~~~m~~-~~~~~~~-~~~~~ll~~~~~---------~~~~~~a~~~~~~m~  102 (207)
                      ..|  ...+.+.....     ..+.|+.+|.+... +...|+- ..|..+-.++..         .....+|.+.-++..
T Consensus       252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv  331 (458)
T PRK11906        252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS  331 (458)
T ss_pred             cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            456  66666655522     34677888888872 2334443 233333222211         233455777777777


Q ss_pred             hCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-
Q 045498          103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST-  181 (207)
Q Consensus       103 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-  181 (207)
                      +.+ +-|......+-.+..-.++++.|...|++....+.. ...+|........-.|+.++|.+.+++..+.  .|... 
T Consensus       332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~  407 (458)
T PRK11906        332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRK  407 (458)
T ss_pred             hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhH
Confidence            776 336777777777777788899999999998887433 3455555556666789999999999986654  34332 


Q ss_pred             --hHHHHHHHHHhcCchhHHHHHH
Q 045498          182 --SFNTVIQGFLVKNETDRASSFL  203 (207)
Q Consensus       182 --~~~~l~~~~~~~~~~~~a~~~~  203 (207)
                        .....+..|+..+ ++.|.+++
T Consensus       408 ~~~~~~~~~~~~~~~-~~~~~~~~  430 (458)
T PRK11906        408 AVVIKECVDMYVPNP-LKNNIKLY  430 (458)
T ss_pred             HHHHHHHHHHHcCCc-hhhhHHHH
Confidence              2233333454443 55665554

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.37  E-value=7.1  Score=26.51  Aligned_cols=132  Identities=12%  Similarity=0.073  Sum_probs=89.2

Q ss_pred             chhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHH-HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChh-hHHHH
Q 045498           74 ELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV-YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV-TYNIL  151 (207)
Q Consensus        74 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~l  151 (207)
                      +...|...++ +...+..++|+.-|..+.+.|...-+.. --.........|+...|...|+++-.....|-.. -...|
T Consensus        58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl  136 (221)
T COG4649          58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL  136 (221)
T ss_pred             chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence            4456666665 4566778899999999988876532221 1223345678899999999999988765444433 12222


Q ss_pred             H--HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          152 I--NGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       152 i--~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      =  ..+...|.+++...-.+-+-..+-+--...-..|-.+--+.|++.+|.++|.+.
T Consensus       137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qi  193 (221)
T COG4649         137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQI  193 (221)
T ss_pred             HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence            2  234578889988888887766554444455566777778999999999998764

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.27  E-value=15  Score=30.14  Aligned_cols=100  Identities=12%  Similarity=0.032  Sum_probs=72.0

Q ss_pred             hHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 045498           84 DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME  163 (207)
Q Consensus        84 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~  163 (207)
                      ...+.|+.+.|.++..+..      +..-|..|-++....+++..|.+.|.....         |..|+-.+...|+-+.
T Consensus       646 lal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~  710 (794)
T KOG0276|consen  646 LALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEG  710 (794)
T ss_pred             hhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhH
Confidence            3456777888877765532      556789999999999999999999886553         5567777777888777


Q ss_pred             HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHH
Q 045498          164 ADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK  204 (207)
Q Consensus       164 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~  204 (207)
                      ...+-+...+.|..      +.-..+|...|+++++.+++.
T Consensus       711 l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi  745 (794)
T KOG0276|consen  711 LAVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLI  745 (794)
T ss_pred             HHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHH
Confidence            77777777776542      233445667788888877764

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=87.27  E-value=18  Score=32.12  Aligned_cols=117  Identities=17%  Similarity=0.063  Sum_probs=72.2

Q ss_pred             CccHHhHHHHHH----HHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHH
Q 045498           37 CLDVFVYSSLIN----GLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV  112 (207)
Q Consensus        37 ~~~~~~~~~ll~----~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~  112 (207)
                      +|+...+.....    .+.....+++|.-.|+..-+         ..-.+.+|..+|+|.+|..+..++.....+ -..+
T Consensus       932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de-~~~~ 1001 (1265)
T KOG1920|consen  932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDE-LVIL 1001 (1265)
T ss_pred             ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHH-HHHH
Confidence            455555444443    34455777777777765422         234677888899999998888876532211 1122


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045498          113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM  171 (207)
Q Consensus       113 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  171 (207)
                      -..|+.-+...++.-+|-++..+..+.        ....+..+++...|++|..+....
T Consensus      1002 a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1002 AEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred             HHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence            266777888888888888888776653        223344455556666666655443

>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised

Probab=87.19  E-value=2.7  Score=21.50  Aligned_cols=33  Identities=18%  Similarity=0.390  Sum_probs=20.4

Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 045498          156 CKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ  188 (207)
Q Consensus       156 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~  188 (207)
                      -+.|-+.++..++++|.+.|+..+...+..+++
T Consensus        13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~   45 (48)
T PF11848_consen   13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR   45 (48)
T ss_pred             HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence            355666666666666666666666666655543

This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=87.01  E-value=1.9  Score=19.61  Aligned_cols=27  Identities=22%  Similarity=0.038  Sum_probs=16.1

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045498          147 TYNILINGLCKKGMIMEADKLLVQMKE  173 (207)
Q Consensus       147 ~~~~li~~~~~~~~~~~a~~~~~~m~~  173 (207)
                      +|..+...|...|++++|...|++..+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            445555666666666666666665544

...

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=86.97  E-value=4.6  Score=29.78  Aligned_cols=70  Identities=16%  Similarity=0.061  Sum_probs=50.2

Q ss_pred             hHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-----CCCCCChhh
Q 045498           77 TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE-----KGLVPGVVT  147 (207)
Q Consensus        77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~  147 (207)
                      +++...+.|..+|.+.+|.++.++....+ +.+...+-.++..++..|+--.+.+-++.+.+     .|+..+...
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi  355 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI  355 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence            45566678888888888888888887765 55777788888888888887667666665543     355544433

>PRK11906 transcriptional regulator; Provisional

Probab=86.27  E-value=15  Score=29.05  Aligned_cols=113  Identities=13%  Similarity=-0.007  Sum_probs=77.6

Q ss_pred             ChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHH
Q 045498           55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLD  134 (207)
Q Consensus        55 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  134 (207)
                      ...+|.++-++..+.+ +-|......+-.+....++++.+...|++....+.. ...+|...-..+.-.|+.++|.+.++
T Consensus       319 ~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~  396 (458)
T PRK11906        319 AAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICID  396 (458)
T ss_pred             HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3456677777777765 567778888888788888899999999998876522 34556555566677899999999999


Q ss_pred             HHHhCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 045498          135 QLSEKGLV-PGVVTYNILINGLCKKGMIMEADKLLVQ  170 (207)
Q Consensus       135 ~~~~~g~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~  170 (207)
                      +..+..+. .-.......+..|+.. -++.+.++|-.
T Consensus       397 ~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  432 (458)
T PRK11906        397 KSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYYK  432 (458)
T ss_pred             HHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence            97765321 1122333444566655 45667766643

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=86.11  E-value=7.5  Score=25.52  Aligned_cols=52  Identities=13%  Similarity=0.037  Sum_probs=29.2

Q ss_pred             hcCChhHHHHHHHHHHhCCC-CcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCC
Q 045498           52 TFNRLKEAVELFDKMVAQGI-TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK  105 (207)
Q Consensus        52 ~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~  105 (207)
                      ..++++++..+++.|.-... .+...+|...  .+...|+|++|.++|+++.+.+
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~   74 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSA   74 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence            35667777777776654321 1122233333  3566677777777777766654

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised

Probab=86.07  E-value=3.2  Score=21.23  Aligned_cols=31  Identities=13%  Similarity=0.220  Sum_probs=16.5

Q ss_pred             hcCChhHHHHHHHHHHhCCCCcchhhHHHHH
Q 045498           52 TFNRLKEAVELFDKMVAQGITAELVTYNPLI   82 (207)
Q Consensus        52 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll   82 (207)
                      +.|-.+++..++++|.+.|+..+...+..++
T Consensus        14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L   44 (48)
T PF11848_consen   14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL   44 (48)
T ss_pred             HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence            4455555555555555555555555555444

This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=85.64  E-value=7.5  Score=25.10  Aligned_cols=67  Identities=25%  Similarity=0.224  Sum_probs=45.8

Q ss_pred             cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 045498          109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC  176 (207)
Q Consensus       109 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  176 (207)
                      +...++..++.+.+.|+-+.-.+++..+.+. -.+++...-.+..+|.+.|+..++.+++.+.=+.|+
T Consensus        85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   85 LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence            3345566778888888888888888887653 256777888888899999999988888888877765

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=85.47  E-value=4  Score=31.62  Aligned_cols=123  Identities=16%  Similarity=0.027  Sum_probs=75.1

Q ss_pred             hhHHHHHhhhhhhhHHHHH-----------HcCCCc-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-Ccchh
Q 045498           14 VYGIRINGMCKIREIDSAI-----------KKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQ----GI-TAELV   76 (207)
Q Consensus        14 ~~~~ll~~~~~~g~~~~a~-----------~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~   76 (207)
                      .|..|-+.|.-.|+++.|+           +-|-+. ....+..+-++++-.|+++.|.+.|+.-...    |- .....
T Consensus       197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ  276 (639)
T KOG1130|consen  197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ  276 (639)
T ss_pred             hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence            4555556666677777776           222222 2345667777777788888888777765322    11 12234


Q ss_pred             hHHHHHhhHhhhcChhhHHHHHHHHHhCC-----CCccHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 045498           77 TYNPLIHDNWEKQGRFSAMALLQTLERDK-----YELNIEVYSLVIDGLCRVGRWEEARKKLDQL  136 (207)
Q Consensus        77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  136 (207)
                      .+-+|-+.|.-..++.+|+..+.+-....     ..-....|.++-.+|...|..++|..+.+.-
T Consensus       277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h  341 (639)
T KOG1130|consen  277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH  341 (639)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            55667777777777777777766532211     1113457778888888888888777766544

>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B

Probab=85.19  E-value=4.1  Score=22.15  Aligned_cols=26  Identities=38%  Similarity=0.620  Sum_probs=15.5

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHh
Q 045498          113 YSLVIDGLCRVGRWEEARKKLDQLSE  138 (207)
Q Consensus       113 ~~~li~~~~~~~~~~~a~~~~~~~~~  138 (207)
                      .-.+|.+|...|++++|.+.++.+..
T Consensus        26 hLqvI~gllqlg~~~~a~eYi~~~~~   51 (62)
T PF14689_consen   26 HLQVIYGLLQLGKYEEAKEYIKELSK   51 (62)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            33456666667777777666665544

>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat

Probab=85.05  E-value=5.8  Score=23.32  Aligned_cols=64  Identities=19%  Similarity=0.198  Sum_probs=28.7

Q ss_pred             HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhH
Q 045498          129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR  198 (207)
Q Consensus       129 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~  198 (207)
                      +.++++.+.+.|+- +......+-.+-...|+.+.|.+++..+. .    .+..|...+.++...|.-+-
T Consensus        21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-r----g~~aF~~Fl~aLreT~~~~L   84 (88)
T cd08819          21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-Q----KEGWFSKFLQALRETEHHEL   84 (88)
T ss_pred             HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-c----CCcHHHHHHHHHHHcCchhh
Confidence            33445555555432 33223322222224455555555555555 3    12335555555555554433

Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=85.03  E-value=5.4  Score=22.96  Aligned_cols=46  Identities=11%  Similarity=0.114  Sum_probs=22.4

Q ss_pred             hhcChhhHHHHHHHHHhCCCCcc--HHHHHHHHHHHhcCCCHHHHHHH
Q 045498           87 EKQGRFSAMALLQTLERDKYELN--IEVYSLVIDGLCRVGRWEEARKK  132 (207)
Q Consensus        87 ~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~  132 (207)
                      ..++.++|+..|....+.-..+.  -.++..++.+|+..|++++++++
T Consensus        18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f   65 (80)
T PF10579_consen   18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF   65 (80)
T ss_pred             ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555444322221  13444555555555555555544

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PRK11639 zinc uptake transcriptional repressor; Provisional

Probab=84.89  E-value=9.5  Score=25.63  Aligned_cols=61  Identities=16%  Similarity=0.025  Sum_probs=37.0

Q ss_pred             HHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 045498          101 LERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM  162 (207)
Q Consensus       101 m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~  162 (207)
                      +.+.|+.++.. -..++..+...++.-.|.++++.+.+.+..++..|-..-+..+.+.|-+.
T Consensus        17 L~~~GlR~T~q-R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~   77 (169)
T PRK11639         17 CAQRNVRLTPQ-RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH   77 (169)
T ss_pred             HHHcCCCCCHH-HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence            44556554442 23444454445556677777777777776666666666666666666554

>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]

Probab=84.44  E-value=9  Score=25.01  Aligned_cols=60  Identities=15%  Similarity=0.124  Sum_probs=25.5

Q ss_pred             HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 045498          134 DQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN  194 (207)
Q Consensus       134 ~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~  194 (207)
                      ..+.+.|++++.. -..++..+.+.+..-.|.++++++.+.+...+..|-..-++.+...|
T Consensus        10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G   69 (145)
T COG0735          10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG   69 (145)
T ss_pred             HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence            3344444443322 22333444444444445555555555444444444444444444444

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=84.34  E-value=7.1  Score=23.75  Aligned_cols=88  Identities=16%  Similarity=0.177  Sum_probs=60.3

Q ss_pred             cChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 045498           89 QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL  168 (207)
Q Consensus        89 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~  168 (207)
                      ...++|..|-+.+...+-. ...+--+-+..+...|++++|..+.+..    ..||...|-+|-.  .+.|.-+++..-+
T Consensus        19 HcHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl   91 (115)
T TIGR02508        19 HCHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRL   91 (115)
T ss_pred             hHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHH
Confidence            3567888888888766522 3333344467788999999998887765    3688888877765  4677777777777


Q ss_pred             HHHHHcCCCCChhhHH
Q 045498          169 VQMKEKGCFPDSTSFN  184 (207)
Q Consensus       169 ~~m~~~~~~p~~~~~~  184 (207)
                      .+|...| .|-...|.
T Consensus        92 ~rla~sg-~p~lq~Fa  106 (115)
T TIGR02508        92 NRLAASG-DPRLQTFV  106 (115)
T ss_pred             HHHHhCC-CHHHHHHH
Confidence            7777665 34444443

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=84.03  E-value=4.1  Score=30.78  Aligned_cols=48  Identities=8%  Similarity=-0.106  Sum_probs=26.7

Q ss_pred             hHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHH
Q 045498           84 DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKK  132 (207)
Q Consensus        84 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  132 (207)
                      -|.+.|.+++|+..|..-.... +.+.+++..-..+|.+...+..|+.=
T Consensus       106 ~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~D  153 (536)
T KOG4648|consen  106 TYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEED  153 (536)
T ss_pred             hhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHh
Confidence            3455666666666666544332 12555666666666666666555443

>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF

Probab=83.66  E-value=1.4  Score=28.14  Aligned_cols=29  Identities=24%  Similarity=0.480  Sum_probs=15.8

Q ss_pred             CCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 045498          159 GMIMEADKLLVQMKEKGCFPDSTSFNTVIQG  189 (207)
Q Consensus       159 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~  189 (207)
                      |.-..|..+|+.|.+.|-+||.  |+.|+..
T Consensus       109 gsk~DaY~VF~kML~~G~pPdd--W~~Ll~~  137 (140)
T PF11663_consen  109 GSKTDAYAVFRKMLERGNPPDD--WDALLKE  137 (140)
T ss_pred             ccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence            3444566666666666655554  5555443

The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=83.64  E-value=26  Score=33.68  Aligned_cols=148  Identities=10%  Similarity=-0.005  Sum_probs=90.0

Q ss_pred             HHHHHHHhcCChhHHHHHHHHH----HhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 045498           45 SLINGLCTFNRLKEAVELFDKM----VAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL  120 (207)
Q Consensus        45 ~ll~~~~~~~~~~~a~~~~~~m----~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  120 (207)
                      .+-.+-.+.+.+.+|+..+++-    ++..  ....-|..+...|...+++|.+..+......   .|+   ...-|--.
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEH 1459 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHH
Confidence            3444556778899999888883    3221  1223455555589999999998887764221   222   23444556


Q ss_pred             hcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH-HHHHHHhcCchhHH
Q 045498          121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT-VIQGFLVKNETDRA  199 (207)
Q Consensus       121 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-l~~~~~~~~~~~~a  199 (207)
                      ...|+|..|...|+.+...+.. ...+++.++......|.++.+....+-.... ..+....++. =+.+--+.++||..
T Consensus      1460 e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred             HhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhh
Confidence            7789999999999999987522 3667887777777777777777655544433 1222222222 22233455565554


Q ss_pred             HHH
Q 045498          200 SSF  202 (207)
Q Consensus       200 ~~~  202 (207)
                      ...
T Consensus      1538 e~~ 1540 (2382)
T KOG0890|consen 1538 ESY 1540 (2382)
T ss_pred             hhh
Confidence            443

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.65  E-value=19  Score=31.12  Aligned_cols=117  Identities=12%  Similarity=0.073  Sum_probs=72.2

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCcchhhHHHHHhhHhhhcCh--hhHHHHHHHHHhCCCCccHHHHHH
Q 045498           41 FVYSSLINGLCTFNRLKEAVELFDKMVAQG---ITAELVTYNPLIHDNWEKQGR--FSAMALLQTLERDKYELNIEVYSL  115 (207)
Q Consensus        41 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~  115 (207)
                      .-|..|+..|...|+.++|+++|.+..+..   ..--..-+.-++.-+.+.+..  +.+++.-+...+....-...++..
T Consensus       505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~  584 (877)
T KOG2063|consen  505 KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTS  584 (877)
T ss_pred             ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeec
Confidence            348889999999999999999999987632   111112233355555555544  555555555554432211112221


Q ss_pred             ------------HHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 045498          116 ------------VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK  157 (207)
Q Consensus       116 ------------li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~  157 (207)
                                  -+-.|.+....+-+...++.+....-.++..-.+.++..|+.
T Consensus       585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e  638 (877)
T KOG2063|consen  585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE  638 (877)
T ss_pred             cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence                        233455666777888888888877666677777788877764

>PRK10564 maltose regulon periplasmic protein; Provisional

Probab=82.50  E-value=3.8  Score=30.18  Aligned_cols=41  Identities=20%  Similarity=0.246  Sum_probs=25.7

Q ss_pred             ccHHh-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhH
Q 045498           38 LDVFV-YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTY   78 (207)
Q Consensus        38 ~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~   78 (207)
                      |+..+ |+..|....+.|++++|++++++.++.|+.--..+|
T Consensus       254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF  295 (303)
T PRK10564        254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF  295 (303)
T ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence            44433 556777777777777777777777777654333333

>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]

Probab=82.47  E-value=10  Score=24.17  Aligned_cols=86  Identities=17%  Similarity=0.195  Sum_probs=58.2

Q ss_pred             HHhCCCCccHHHHHHHHHHHhcCCCH--HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 045498          101 LERDKYELNIEVYSLVIDGLCRVGRW--EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP  178 (207)
Q Consensus       101 m~~~~~~~~~~~~~~li~~~~~~~~~--~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p  178 (207)
                      --.+|.+ +..-|+.--.-|......  -+..+-+..+..-.+.|++.....-++++-+.+++..|.++|+-++.. +.+
T Consensus        39 ~~~hg~e-t~EEfd~ry~~yf~r~~iD~wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~  116 (149)
T KOG4077|consen   39 SMEHGPE-TAEEFDARYEKYFNRPEIDGWEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGA  116 (149)
T ss_pred             HhhcCcc-cHHHHHHHHHHHcCcccchHHHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-ccc
Confidence            3344544 555566555555543332  345566667777788899999999999999999999999999988765 333


Q ss_pred             ChhhHHHHHH
Q 045498          179 DSTSFNTVIQ  188 (207)
Q Consensus       179 ~~~~~~~l~~  188 (207)
                      -...|-.+++
T Consensus       117 ~k~~Y~y~v~  126 (149)
T KOG4077|consen  117 QKQVYPYYVK  126 (149)
T ss_pred             HHHHHHHHHH
Confidence            3445655554

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=82.23  E-value=20  Score=27.33  Aligned_cols=90  Identities=14%  Similarity=0.078  Sum_probs=55.2

Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHH
Q 045498           48 NGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE  127 (207)
Q Consensus        48 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~  127 (207)
                      +.|.+.|++++|+..|..-.... +-+.+++..-..+|.+...+..|..=.......+ ..-+-.|+.-..+-...|+..
T Consensus       105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~  182 (536)
T KOG4648|consen  105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM  182 (536)
T ss_pred             hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence            34677889999999998776542 3377788777788888888876665555444332 112223444344434445566


Q ss_pred             HHHHHHHHHHhC
Q 045498          128 EARKKLDQLSEK  139 (207)
Q Consensus       128 ~a~~~~~~~~~~  139 (207)
                      +|.+=++...+.
T Consensus       183 EAKkD~E~vL~L  194 (536)
T KOG4648|consen  183 EAKKDCETVLAL  194 (536)
T ss_pred             HHHHhHHHHHhh
Confidence            666655555554

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=82.07  E-value=12  Score=26.92  Aligned_cols=60  Identities=10%  Similarity=-0.068  Sum_probs=46.5

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHH----cC-CCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          147 TYNILINGLCKKGMIMEADKLLVQMKE----KG-CFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       147 ~~~~li~~~~~~~~~~~a~~~~~~m~~----~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      ..-.+..-|.+.|++++|.++|+.+..    .| ..+...+...+..++...|+.+....+.=++
T Consensus       180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL  244 (247)
T PF11817_consen  180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL  244 (247)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            344667888999999999999998853    23 2345677888889999999999988776554

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=82.06  E-value=14  Score=25.33  Aligned_cols=33  Identities=27%  Similarity=0.226  Sum_probs=23.3

Q ss_pred             CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 045498          107 ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK  139 (207)
Q Consensus       107 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  139 (207)
                      .|+..+|..++.++...|+.++|.+..+++...
T Consensus       141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l  173 (193)
T PF11846_consen  141 RPDPNVYQRYALALALLGDPEEARQWLARARRL  173 (193)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            567777777777777777777777777766654

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>PRK09462 fur ferric uptake regulator; Provisional

Probab=82.06  E-value=12  Score=24.50  Aligned_cols=60  Identities=15%  Similarity=0.222  Sum_probs=29.3

Q ss_pred             HHhCCCCccHHHHHHHHHHHhcC-CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 045498          101 LERDKYELNIEVYSLVIDGLCRV-GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI  161 (207)
Q Consensus       101 m~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~  161 (207)
                      +.+.|+.++. .-..++..+... +..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus         8 l~~~glr~T~-qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli   68 (148)
T PRK09462          8 LKKAGLKVTL-PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV   68 (148)
T ss_pred             HHHcCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence            4444554433 223333333332 34556666666666655555555555555555555543

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.94  E-value=24  Score=30.58  Aligned_cols=116  Identities=15%  Similarity=0.111  Sum_probs=76.5

Q ss_pred             hHHHHHhhHhhhcChhhHHHHHHHHHhCC---CCccHHHHHHHHHHHhcCCCH--HHHHHHHHHHHhCCCCCChhhHH--
Q 045498           77 TYNPLIHDNWEKQGRFSAMALLQTLERDK---YELNIEVYSLVIDGLCRVGRW--EEARKKLDQLSEKGLVPGVVTYN--  149 (207)
Q Consensus        77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~~~~~--~~a~~~~~~~~~~g~~~~~~~~~--  149 (207)
                      -|..|+..|...|+.++|+++|.+.....   -..-...+--++..+.+.+..  +.+++.-+...+....-....++  
T Consensus       506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~  585 (877)
T KOG2063|consen  506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE  585 (877)
T ss_pred             cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence            48889999999999999999999987632   111123344467777777665  66666666665553221111221  


Q ss_pred             ----------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 045498          150 ----------ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV  192 (207)
Q Consensus       150 ----------~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~  192 (207)
                                .-+-.|......+.+..+++.+....-.++..-.+.++.-|+.
T Consensus       586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e  638 (877)
T KOG2063|consen  586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE  638 (877)
T ss_pred             ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence                      2334456677778888888888877666677777777777754

>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes

Probab=81.46  E-value=6.2  Score=21.76  Aligned_cols=52  Identities=13%  Similarity=0.075  Sum_probs=28.5

Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCc
Q 045498          143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE  195 (207)
Q Consensus       143 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~  195 (207)
                      |+...++.++...+...-++++...+.+..+.|. .+..+|.--++.+++..-
T Consensus         6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaReQF   57 (65)
T PF09454_consen    6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAREQF   57 (65)
T ss_dssp             -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHH
Confidence            4445566666666666666666666666666553 345555555555554433

ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.

>KOG4567 consensus GTPase-activating protein [General function prediction only]

Probab=81.38  E-value=17  Score=27.12  Aligned_cols=70  Identities=11%  Similarity=0.130  Sum_probs=49.8

Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----------cCchhHH
Q 045498          130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV----------KNETDRA  199 (207)
Q Consensus       130 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----------~~~~~~a  199 (207)
                      .++|+.+.+.++.|.-.++..+.-.+.+.=.+.++..+++.+...     +.-|..|+..||.          .|++...
T Consensus       263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n  337 (370)
T KOG4567|consen  263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN  337 (370)
T ss_pred             HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            567888888888888888888877788888888888888888753     2335666665553          3566665


Q ss_pred             HHHHH
Q 045498          200 SSFLK  204 (207)
Q Consensus       200 ~~~~~  204 (207)
                      .++++
T Consensus       338 mkLLQ  342 (370)
T KOG4567|consen  338 MKLLQ  342 (370)
T ss_pred             HHHHh
Confidence            55554

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=81.37  E-value=19  Score=26.64  Aligned_cols=127  Identities=18%  Similarity=0.105  Sum_probs=78.5

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCcchhh-------HHHHHhhHhhhcChhhHHHHHHHH----HhCCCCccHHHHH
Q 045498           46 LINGLCTFNRLKEAVELFDKMVAQGITAELVT-------YNPLIHDNWEKQGRFSAMALLQTL----ERDKYELNIEVYS  114 (207)
Q Consensus        46 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-------~~~ll~~~~~~~~~~~a~~~~~~m----~~~~~~~~~~~~~  114 (207)
                      +.+-..+.+++++|+..+.++...|+..|..+       ...+...|.+.|+.....+.....    ....-+.......
T Consensus         9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir   88 (421)
T COG5159           9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR   88 (421)
T ss_pred             HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence            44556688999999999999999988777654       445778888888876644444322    2222122344556


Q ss_pred             HHHHHHhcC-CCHHHHHHHHHHHHhCCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045498          115 LVIDGLCRV-GRWEEARKKLDQLSEKGLV-----PGVVTYNILINGLCKKGMIMEADKLLVQMK  172 (207)
Q Consensus       115 ~li~~~~~~-~~~~~a~~~~~~~~~~g~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  172 (207)
                      +++.-+... ..++....+.....+.-.+     .....-.-++..+.+.|.+.+|..+...+.
T Consensus        89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll  152 (421)
T COG5159          89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLL  152 (421)
T ss_pred             HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            666666443 3355555554444332111     111223457788899999999988766543

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=81.35  E-value=20  Score=26.67  Aligned_cols=56  Identities=9%  Similarity=-0.019  Sum_probs=35.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHH
Q 045498          148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLK  204 (207)
Q Consensus       148 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~  204 (207)
                      ++...+.|..+|.+.+|.++.++....+ +.+...+..|+..+...|+--++.+-++
T Consensus       282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khye  337 (361)
T COG3947         282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYE  337 (361)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHH
Confidence            3445566677777777777777766552 4466667777777777776444444433

>PRK10564 maltose regulon periplasmic protein; Provisional

Probab=80.90  E-value=4.5  Score=29.84  Aligned_cols=36  Identities=22%  Similarity=0.320  Sum_probs=21.5

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhH
Q 045498          113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY  148 (207)
Q Consensus       113 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~  148 (207)
                      |+..|..-.+.||+++|+.++++.++.|+.--..+|
T Consensus       260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF  295 (303)
T PRK10564        260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF  295 (303)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence            346666666666666666666666666655333333

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=80.59  E-value=14  Score=24.36  Aligned_cols=63  Identities=19%  Similarity=0.236  Sum_probs=41.6

Q ss_pred             hhHHHHHhh---HhhhcChhhHHHHHHHHHhCCCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC
Q 045498           76 VTYNPLIHD---NWEKQGRFSAMALLQTLERDKYE-LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG  140 (207)
Q Consensus        76 ~~~~~ll~~---~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g  140 (207)
                      .+.+.||..   -....+.+++..+++.|.-.... +...+|...  .+...|+|++|.+++++..+.+
T Consensus         8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~   74 (153)
T TIGR02561         8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSA   74 (153)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence            344444443   34577888888888888754322 234445444  4567889999999999988874

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation

Probab=80.23  E-value=9.6  Score=22.36  Aligned_cols=42  Identities=10%  Similarity=0.163  Sum_probs=26.7

Q ss_pred             HHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHH
Q 045498           61 ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE  102 (207)
Q Consensus        61 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~  102 (207)
                      ++|+-....|+..|+.+|..++.....+=.++...++++.|-
T Consensus        29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~   70 (88)
T PF12926_consen   29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC   70 (88)
T ss_pred             HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            566666666666777777766666655556666666666554

This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].

>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes

Probab=80.05  E-value=8  Score=21.35  Aligned_cols=44  Identities=11%  Similarity=0.073  Sum_probs=19.0

Q ss_pred             hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 045498           76 VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL  120 (207)
Q Consensus        76 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  120 (207)
                      ..++.++...++..-.+++...+.+..+.|. .+..+|---++.+
T Consensus         9 ~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~L   52 (65)
T PF09454_consen    9 PLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSL   52 (65)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence            3444444444444444444444444444442 2333343333333

ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	207
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	1e-13
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-11

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 68.3 bits (165), Expect = 1e-13
 Identities = 19/134 (14%), Positives = 41/134 (30%), Gaps = 3/134 (2%)

Query: 77  TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQL 136
               L+ +   K       A      + +     +             +   A   L   
Sbjct: 94  QLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVH 153

Query: 137 ---SEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK 193
               +K  +  +  YN ++ G  ++G   E   +L  +K+ G  PD  S+   +Q    +
Sbjct: 154 HGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQ 213

Query: 194 NETDRASSFLKKNM 207
           ++         + M
Sbjct: 214 DQDAGTIERCLEQM 227

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 61.4 bits (147), Expect = 2e-11
 Identities = 27/188 (14%), Positives = 66/188 (35%), Gaps = 13/188 (6%)

Query: 5   EQRFKGNFHVYGIRINGMCKIREIDSA----------IKKGICLDVFVYSSLINGLCTFN 54
           + +  G                ++  A           +K   L + +Y++++ G     
Sbjct: 120 QAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQG 179

Query: 55  RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMA--LLQTLERDKYELNIEV 112
             KE V +   +   G+T +L++Y   +     +Q + +      L+ + ++  +L    
Sbjct: 180 AFKELVYVLFMVKDAGLTPDLLSYAAAL-QCMGRQDQDAGTIERCLEQMSQEGLKLQALF 238

Query: 113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK 172
            ++++    R    +   K     S    +P  V  + L+  +  K   +   KL + +K
Sbjct: 239 TAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLK 298

Query: 173 EKGCFPDS 180
              C  + 
Sbjct: 299 TLQCLFEK 306

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	207
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.91
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.91
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.89
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.89
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.77
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.76
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.76
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.74
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.73
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.73
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.72
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.72
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.72
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.72
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.7
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.69
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.69
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.69
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.69
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.68
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.68
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.67
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.66
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.64
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.64
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.63
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.62
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.61
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.61
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.61
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.6
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.6
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.6
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.59
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.57
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.57
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.57
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.57
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.56
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.55
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.54
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.53
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.53
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.53
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.52
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.51
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.51
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.51
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.5
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.5
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.49
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.49
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.48
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.47
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.44
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.44
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.43
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.41
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.4
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.37
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.37
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.35
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.34
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.32
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.31
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.29
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.27
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.27
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.27
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.26
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.26
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.25
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.25
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.23
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.23
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.22
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.22
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.21
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.2
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.2
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.2
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.19
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.19
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.17
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.16
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.16
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.15
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.15
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.15
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.14
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.13
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.12
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.1
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.1
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.1
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.1
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.08
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.08
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.08
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.06
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.06
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.06
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.06
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.05
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.05
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.04
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.04
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.04
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.02
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.01
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.01
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.0
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.99
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.98
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.98
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.98
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.97
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.96
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.95
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.95
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.94
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.93
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.92
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.89
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.89
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.89
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.89
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.88
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.85
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.83
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.81
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.81
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.79
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.79
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.79
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.78
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.77
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.77
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.77
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.76
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.76
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.75
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.75
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.74
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.73
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.73
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.73
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.71
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.7
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.7
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.68
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.67
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.66
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.66
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.65
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.64
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.64
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.64
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.63
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.61
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.57
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.57
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.55
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.55
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.55
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.54
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.52
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.52
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.51
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.51
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.51
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.45
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.43
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.41
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.4
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.39
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.39
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.36
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.36
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.35
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.35
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.34
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.32
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.3
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.27
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.2
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.19
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.17
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.17
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.17
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.16
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.11
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.05
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.0
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.97
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.95
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.95
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.93
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	97.91
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.85
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.82
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.78
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.76
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.75
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.74
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.66
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.62
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.59
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.58
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.58
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.46
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.37
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.28
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.28
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.04
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.99
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.94
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.89
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.76
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.51
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.51
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.42
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.41
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.4
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.37
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.3
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.23
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.17
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.09
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.76
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	95.55
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	95.52
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.5
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	95.21
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	94.5
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	94.47
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	93.84
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	93.51
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	92.19
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	91.84
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	91.81
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	91.74
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	91.06
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	91.03
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	89.88
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	89.79
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	89.76
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	89.53
2p58_C	116	Putative type III secretion protein YSCG; type III	89.44
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	89.34
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	88.56
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	87.97
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	87.14
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	86.03
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	84.39
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	82.85
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	82.81
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	82.8
2xig_A	150	Ferric uptake regulation protein; hpfur, transcrip	80.96
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	80.95
1mzb_A	136	Ferric uptake regulation protein; ferric uptake re	80.74
2d2s_A	235	Exocyst complex component EXO84; tethering complex	80.62
2fe3_A	145	Peroxide operon regulator; oxidative stress regula	80.6
2ion_A	152	PDCD4, programmed cell death 4, PDCD4; alpha-helic	80.49
2xig_A	150	Ferric uptake regulation protein; hpfur, transcrip	80.41
2nsz_A	129	Programmed cell death protein 4; PDCD4, tumor supp	80.41
2b7e_A	59	PRE-mRNA processing protein PRP40; structural prot	80.12

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=8.1e-40  Score=251.59  Aligned_cols=192  Identities=14%  Similarity=0.198  Sum_probs=176.3

Q ss_pred             ccccccccch-hhhHHHHHhhhhhhhHHHHH-------HcCCCccHHhHHHHHHHHHhcCC---------hhHHHHHHHH
Q 045498            3 LTEQRFKGNF-HVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNR---------LKEAVELFDK   65 (207)
Q Consensus         3 m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~-------~~~~~~~~~~~~~ll~~~~~~~~---------~~~a~~~~~~   65 (207)
                      +.++++.+.+ .+++.+|++|++.|++++|+       ..|++||..+||+||.+|++.+.         +++|.++|++
T Consensus        16 ~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~   95 (501)
T 4g26_A           16 AKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQ   95 (501)
T ss_dssp             --------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHH
T ss_pred             HHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHH
Confidence            4556666554 46899999999999999998       88999999999999999998765         6889999999


Q ss_pred             HHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCh
Q 045498           66 MVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV  145 (207)
Q Consensus        66 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~  145 (207)
                      |.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus        96 M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~  175 (501)
T 4g26_A           96 MIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEE  175 (501)
T ss_dssp             HHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCH
T ss_pred             HHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 045498          146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN  194 (207)
Q Consensus       146 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~  194 (207)
                      .||++||.+|++.|++++|.+++++|++.|..|+..||+.++..|+..+
T Consensus       176 ~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~  224 (501)
T 4g26_A          176 PELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV  224 (501)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred             HHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence            9999999999999999999999999999999999999999999998743

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=1e-37  Score=239.92  Aligned_cols=174  Identities=17%  Similarity=0.200  Sum_probs=161.9

Q ss_pred             HcCCCccH-HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcC---------hhhHHHHHHHHH
Q 045498           33 KKGICLDV-FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG---------RFSAMALLQTLE  102 (207)
Q Consensus        33 ~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~---------~~~a~~~~~~m~  102 (207)
                      +.+..+++ ..++.+|++|++.|++++|+++|++|.+.|++||..|||+||.+|++.+.         .++|.++|++|.
T Consensus        18 ~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~   97 (501)
T 4g26_A           18 KKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMI   97 (501)
T ss_dssp             ------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHH
T ss_pred             HhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHH
Confidence            45554443 46889999999999999999999999999999999999999999987654         678999999999


Q ss_pred             hCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 045498          103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTS  182 (207)
Q Consensus       103 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~  182 (207)
                      +.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..|
T Consensus        98 ~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~t  177 (501)
T 4g26_A           98 VDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPE  177 (501)
T ss_dssp             HTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCchhHHHHHHHhh
Q 045498          183 FNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       183 ~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      |++||.+|++.|++++|.+++++|
T Consensus       178 y~~Li~~~~~~g~~d~A~~ll~~M  201 (501)
T 4g26_A          178 LAALLKVSMDTKNADKVYKTLQRL  201 (501)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCCCHHHHHHHHHHH
Confidence            999999999999999999999998

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.91  E-value=1.6e-24  Score=173.56  Aligned_cols=151  Identities=11%  Similarity=0.042  Sum_probs=125.1

Q ss_pred             cHHhHHHHHHHHHhcCChhHHHHHHHHHHh---CCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHH
Q 045498           39 DVFVYSSLINGLCTFNRLKEAVELFDKMVA---QGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL  115 (207)
Q Consensus        39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~  115 (207)
                      -..||+++|++|++.|++++|.++|++|.+   .|+.||..|||+||++|++.|++++|.++|++|.+.|+.||..||++
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            456899999999999999999999988764   58999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCH-HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------hhhHHHHHH
Q 045498          116 VIDGLCRVGRW-EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD------STSFNTVIQ  188 (207)
Q Consensus       116 li~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~------~~~~~~l~~  188 (207)
                      +|.++++.|+. +.|.++|++|.+.|+.||..+|++++.+..+.+    +++..+++ .-++.|+      ..+...|.+
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d  280 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD  280 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence            99999999984 789999999999999999999999997766554    33333333 2244443      444455555


Q ss_pred             HHHhcC
Q 045498          189 GFLVKN  194 (207)
Q Consensus       189 ~~~~~~  194 (207)
                      .|.+.+
T Consensus       281 l~s~d~  286 (1134)
T 3spa_A          281 VYAKDG  286 (1134)
T ss_dssp             HHCCCS
T ss_pred             HHccCC
Confidence            565544

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.91  E-value=2.7e-24  Score=172.35  Aligned_cols=125  Identities=15%  Similarity=0.146  Sum_probs=114.4

Q ss_pred             chhhHHHHHhhHhhhcChhhHHHHHHHHHh---CCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 045498           74 ELVTYNPLIHDNWEKQGRFSAMALLQTLER---DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI  150 (207)
Q Consensus        74 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~  150 (207)
                      -..||++||++|++.|++++|.++|++|.+   .|+.||+.|||++|.+|++.|++++|.++|++|.+.|+.||..|||+
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            446899999999999999999999988764   57899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCH-HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhH
Q 045498          151 LINGLCKKGMI-MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR  198 (207)
Q Consensus       151 li~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~  198 (207)
                      +|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.+..+.+-++.
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~  254 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKA  254 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHH
Confidence            99999999985 7899999999999999999999998877766544433

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.89  E-value=3.9e-21  Score=151.05  Aligned_cols=194  Identities=11%  Similarity=-0.083  Sum_probs=154.5

Q ss_pred             cchhhhHHHHHhhhhhhhHHHHH---H---cCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHh
Q 045498           10 GNFHVYGIRINGMCKIREIDSAI---K---KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH   83 (207)
Q Consensus        10 p~~~~~~~ll~~~~~~g~~~~a~---~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~   83 (207)
                      .+..+++.+...|.+.|++++|.   .   ...+.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..+..
T Consensus       371 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~  449 (597)
T 2xpi_A          371 EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGM  449 (597)
T ss_dssp             TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHH
Confidence            45677888888888888888887   1   1123357788888888888888888888888887764 457778888888


Q ss_pred             hHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCCCC--hhhHHHHHHHHHh
Q 045498           84 DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK----GLVPG--VVTYNILINGLCK  157 (207)
Q Consensus        84 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~~~--~~~~~~li~~~~~  157 (207)
                      +|.+.|++++|.++|+++.+.. +.+..+|+.+...|.+.|++++|.++|+++.+.    +..|+  ..+|..+..+|.+
T Consensus       450 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~  528 (597)
T 2xpi_A          450 QHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK  528 (597)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence            8888888888888888887764 336778888888888888888888888888766    56676  6788888888888


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       158 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      .|++++|..+|+++.+.+ +.+..+|..+..+|.+.|++++|.++++++
T Consensus       529 ~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  576 (597)
T 2xpi_A          529 LKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHES  576 (597)
T ss_dssp             TTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            888888888888888764 347788888888888888888888888775

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.89  E-value=6.6e-21  Score=149.79  Aligned_cols=195  Identities=10%  Similarity=-0.050  Sum_probs=140.9

Q ss_pred             ccchhhhHHHHHhhhhhhhHHHHH-------H---------------------------------cCCCccHHhHHHHHH
Q 045498            9 KGNFHVYGIRINGMCKIREIDSAI-------K---------------------------------KGICLDVFVYSSLIN   48 (207)
Q Consensus         9 ~p~~~~~~~ll~~~~~~g~~~~a~-------~---------------------------------~~~~~~~~~~~~ll~   48 (207)
                      .++..+++.++..|.+.|++++|.       .                                 ...+.+..+|+.+..
T Consensus       302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~  381 (597)
T 2xpi_A          302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGI  381 (597)
T ss_dssp             GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence            466777777777777777777766       1                                 112335667777777


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHH
Q 045498           49 GLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEE  128 (207)
Q Consensus        49 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~  128 (207)
                      .|.+.|++++|.++|+++.+.. +.+..+|+.++.++.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++
T Consensus       382 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~  459 (597)
T 2xpi_A          382 YYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILL  459 (597)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHH
Confidence            7777777777777777776643 3456677777777777777777777777777664 3366777777777888888888


Q ss_pred             HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--hhhHHHHHHHHHhcCchhHHHHH
Q 045498          129 ARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK----GCFPD--STSFNTVIQGFLVKNETDRASSF  202 (207)
Q Consensus       129 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~~~~~~a~~~  202 (207)
                      |.++|+++.+.... +..+|+.++..|.+.|++++|.++|+++.+.    +..|+  ..+|..+..+|.+.|++++|.++
T Consensus       460 A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~  538 (597)
T 2xpi_A          460 ANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA  538 (597)
T ss_dssp             HHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            88888777766433 6777888888888888888888888877765    55666  66788888888888888888888


Q ss_pred             HHhh
Q 045498          203 LKKN  206 (207)
Q Consensus       203 ~~~m  206 (207)
                      ++++
T Consensus       539 ~~~~  542 (597)
T 2xpi_A          539 LNQG  542 (597)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7765

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.77  E-value=3.1e-16  Score=108.47  Aligned_cols=192  Identities=15%  Similarity=-0.030  Sum_probs=155.6

Q ss_pred             ccchhhhHHHHHhhhhhhhHHHHH-----H-cCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHH
Q 045498            9 KGNFHVYGIRINGMCKIREIDSAI-----K-KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI   82 (207)
Q Consensus         9 ~p~~~~~~~ll~~~~~~g~~~~a~-----~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll   82 (207)
                      +++...+..+...+.+.|++++|.     . .--+.++..+..+...+.+.|++++|+..|++..+.. |.+...+..+-
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg   80 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS   80 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence            567788899999999999999998     2 2334467889999999999999999999999998875 45677888899


Q ss_pred             hhHhhh-----------cChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 045498           83 HDNWEK-----------QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL  151 (207)
Q Consensus        83 ~~~~~~-----------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l  151 (207)
                      .++...           |++++|...+++..+... -+...+..+..++...|++++|...+++..+..  .+...+..+
T Consensus        81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l  157 (217)
T 2pl2_A           81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL  157 (217)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred             HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence            999999           999999999999988753 367888999999999999999999999999887  588899999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498          152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK  205 (207)
Q Consensus       152 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  205 (207)
                      ..++...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++
T Consensus       158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~  210 (217)
T 2pl2_A          158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL  210 (217)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            999999999999999999998863 34678889999999999999999998875

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.76  E-value=3.6e-16  Score=116.86  Aligned_cols=163  Identities=16%  Similarity=0.038  Sum_probs=102.5

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHH
Q 045498           40 VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG  119 (207)
Q Consensus        40 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  119 (207)
                      ...|..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...++++.+... .+..++..+...
T Consensus       203 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~  280 (388)
T 1w3b_A          203 LDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANA  280 (388)
T ss_dssp             HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence            3344444445555555555555555544432 22345666666667777777777777777666542 245566677777


Q ss_pred             HhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHH
Q 045498          120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA  199 (207)
Q Consensus       120 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a  199 (207)
                      +.+.|++++|.+.++++.+.. +.+..++..+...+.+.|++++|...++++.+. .+.+..++..+..++.+.|++++|
T Consensus       281 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A  358 (388)
T 1w3b_A          281 LKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEA  358 (388)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHH
Confidence            777777777777777776653 235666777777777777777777777776654 233456677777777777777777


Q ss_pred             HHHHHhh
Q 045498          200 SSFLKKN  206 (207)
Q Consensus       200 ~~~~~~m  206 (207)
                      .+.++++
T Consensus       359 ~~~~~~a  365 (388)
T 1w3b_A          359 LMHYKEA  365 (388)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.76  E-value=1e-15  Score=114.45  Aligned_cols=164  Identities=18%  Similarity=0.045  Sum_probs=112.7

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHH
Q 045498           40 VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG  119 (207)
Q Consensus        40 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  119 (207)
                      ..+|..+...+.+.|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++..+.. +.+..++..+..+
T Consensus       169 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~  246 (388)
T 1w3b_A          169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACV  246 (388)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHH
Confidence            4445555555555555555555555555443 2234455555555555566666666665555443 2246677788888


Q ss_pred             HhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHH
Q 045498          120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA  199 (207)
Q Consensus       120 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a  199 (207)
                      +.+.|++++|.+.++++.+.+.. +..++..+...+.+.|++++|...|+++.+. .+.+..++..+...+.+.|++++|
T Consensus       247 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A  324 (388)
T 1w3b_A          247 YYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEA  324 (388)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHH
Confidence            88888888888888888876433 5667888888888888888888888888876 345777888888888888888888


Q ss_pred             HHHHHhhC
Q 045498          200 SSFLKKNM  207 (207)
Q Consensus       200 ~~~~~~m~  207 (207)
                      .+.+++++
T Consensus       325 ~~~~~~al  332 (388)
T 1w3b_A          325 VRLYRKAL  332 (388)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            88888763

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.74  E-value=4.3e-16  Score=118.38  Aligned_cols=193  Identities=11%  Similarity=-0.009  Sum_probs=164.8

Q ss_pred             cchhhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHh
Q 045498           10 GNFHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH   83 (207)
Q Consensus        10 p~~~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~   83 (207)
                      .+...+..+...+.+.|++++|+      ....+.+..+|..+..++.+.|++++|+..|+++.+.+ +.+..++..+..
T Consensus        24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~  102 (450)
T 2y4t_A           24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH  102 (450)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence            34567888999999999999998      22234578899999999999999999999999999875 456788999999


Q ss_pred             hHhhhcChhhHHHHHHHHHhCCCCccH---HHHHHH------------HHHHhcCCCHHHHHHHHHHHHhCCCCCChhhH
Q 045498           84 DNWEKQGRFSAMALLQTLERDKYELNI---EVYSLV------------IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY  148 (207)
Q Consensus        84 ~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~  148 (207)
                      ++...|++++|...|+++.+.... +.   ..+..+            ...+.+.|++++|.+.++.+.+... .+...+
T Consensus       103 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~  180 (450)
T 2y4t_A          103 LLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELR  180 (450)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHH
Confidence            999999999999999999886532 34   555555            4448899999999999999998754 378889


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       149 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      ..+..+|.+.|++++|...|+++.+.. +.+..++..+..+|...|++++|.+.++++
T Consensus       181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  237 (450)
T 2y4t_A          181 ELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVREC  237 (450)
T ss_dssp             HHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999999999999999998763 457889999999999999999999999876

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.73  E-value=1.4e-15  Score=106.27  Aligned_cols=193  Identities=16%  Similarity=0.112  Sum_probs=149.3

Q ss_pred             cchhhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHh
Q 045498           10 GNFHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH   83 (207)
Q Consensus        10 p~~~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~   83 (207)
                      .+...|..+...+...|++++|.      ....+.+...+..+...+.+.|++++|+..|++..+.. +.+..++..+..
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~   99 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN   99 (243)
T ss_dssp             ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence            45567778888889999999888      22334468889999999999999999999999998764 456788899999


Q ss_pred             hHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 045498           84 DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME  163 (207)
Q Consensus        84 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~  163 (207)
                      .+...|++++|...+++..+.. +.+...+..+...+.+.|++++|.+.+++..+.... +...+..+...+.+.|++++
T Consensus       100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~  177 (243)
T 2q7f_A          100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDE  177 (243)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHH
Confidence            9999999999999999988875 346778999999999999999999999999887433 67889999999999999999


Q ss_pred             HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          164 ADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       164 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      |...+++..+.. +.+..++..+..++...|++++|.++++++
T Consensus       178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  219 (243)
T 2q7f_A          178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKA  219 (243)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            999999998773 346788999999999999999999999875

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.73  E-value=4.2e-15  Score=104.56  Aligned_cols=192  Identities=14%  Similarity=-0.046  Sum_probs=163.3

Q ss_pred             hhhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhH
Q 045498           12 FHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN   85 (207)
Q Consensus        12 ~~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~   85 (207)
                      ...+..+...+...|++++|.      ....+.+...+..+...+...|++++|.+.|++..+.. +.+...+..+...+
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~  115 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence            467888888899999998887      11224467889999999999999999999999998774 44677889999999


Q ss_pred             hhhcChhhHHHHHHHHHhCCCCc-cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 045498           86 WEKQGRFSAMALLQTLERDKYEL-NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA  164 (207)
Q Consensus        86 ~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a  164 (207)
                      ...|++++|...+++..+.+..| +...+..+...+.+.|++++|.+.+++..+.... +...+..+...+...|++++|
T Consensus       116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A  194 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPA  194 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999998733334 5678888999999999999999999999887533 678899999999999999999


Q ss_pred             HHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          165 DKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       165 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      ...++...+.. +.+...+..+...+...|++++|.++++++
T Consensus       195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~  235 (252)
T 2ho1_A          195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQL  235 (252)
T ss_dssp             HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            99999988763 356778889999999999999999999875

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.72  E-value=2.7e-15  Score=111.15  Aligned_cols=192  Identities=10%  Similarity=-0.101  Sum_probs=127.9

Q ss_pred             hhhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhH
Q 045498           12 FHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN   85 (207)
Q Consensus        12 ~~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~   85 (207)
                      ...+..+...+.+.|++++|+      -...+.+..+|..+...+.+.|++++|+..|++..+.. +.+..++..+..++
T Consensus        65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~  143 (365)
T 4eqf_A           65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY  143 (365)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            344666666666777777666      11123345666667777777777777777777766553 33455666666666


Q ss_pred             hhhcChhhHHHHHHHHHhCCC------------------------------------------Cc---cHHHHHHHHHHH
Q 045498           86 WEKQGRFSAMALLQTLERDKY------------------------------------------EL---NIEVYSLVIDGL  120 (207)
Q Consensus        86 ~~~~~~~~a~~~~~~m~~~~~------------------------------------------~~---~~~~~~~li~~~  120 (207)
                      ...|++++|...+++..+...                                          .|   +..++..+...+
T Consensus       144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~  223 (365)
T 4eqf_A          144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF  223 (365)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred             HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence            666666666666666544311                                          11   466777777777


Q ss_pred             hcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHH
Q 045498          121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS  200 (207)
Q Consensus       121 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~  200 (207)
                      .+.|++++|.+.+++..+.... +..++..+..+|.+.|++++|...|++..+.. +.+..++..+..+|.+.|++++|.
T Consensus       224 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~  301 (365)
T 4eqf_A          224 HLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAV  301 (365)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence            7888888888888877766432 56677778888888888888888888777652 234677777778888888888888


Q ss_pred             HHHHhh
Q 045498          201 SFLKKN  206 (207)
Q Consensus       201 ~~~~~m  206 (207)
                      +.++++
T Consensus       302 ~~~~~a  307 (365)
T 4eqf_A          302 SNFLTA  307 (365)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            877764

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.72  E-value=9.6e-15  Score=100.65  Aligned_cols=195  Identities=9%  Similarity=-0.095  Sum_probs=164.1

Q ss_pred             cchhhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHh
Q 045498           10 GNFHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH   83 (207)
Q Consensus        10 p~~~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~   83 (207)
                      .+...+..+...+...|++++|.      ....+.+...+..+...+...|++++|...+++..+.. +.+..++..+..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~   84 (225)
T 2vq2_A            6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW   84 (225)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence            34567888899999999999998      12223457889999999999999999999999998764 456778899999


Q ss_pred             hHhhh-cChhhHHHHHHHHHhCCCCc-cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 045498           84 DNWEK-QGRFSAMALLQTLERDKYEL-NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI  161 (207)
Q Consensus        84 ~~~~~-~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~  161 (207)
                      .+... |++++|...+++..+.+..| +...+..+..++.+.|++++|.+.+++..+.... +...+..+...+.+.|++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~  163 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL  163 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred             HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence            99999 99999999999998833233 4678888999999999999999999999887533 578899999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       162 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      ++|...++...+.....+...+..+...+...|+.+.+..+++.+
T Consensus       164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  208 (225)
T 2vq2_A          164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL  208 (225)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            999999999987643257777888888899999999999988764

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.72  E-value=2.4e-15  Score=114.29  Aligned_cols=193  Identities=13%  Similarity=0.048  Sum_probs=160.1

Q ss_pred             cchhhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcch---hhHHH
Q 045498           10 GNFHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL---VTYNP   80 (207)
Q Consensus        10 p~~~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~   80 (207)
                      .+..++..+..+|...|++++|.      -...+.+..++..+..++.+.|++++|...|+++.+.. +.+.   ..+..
T Consensus        58 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~  136 (450)
T 2y4t_A           58 DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQ  136 (450)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHH
Confidence            45778999999999999999998      11223457889999999999999999999999998864 3344   55555


Q ss_pred             HH------------hhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhH
Q 045498           81 LI------------HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY  148 (207)
Q Consensus        81 ll------------~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~  148 (207)
                      +.            ..+...|++++|...++++.+.. +.+..++..+..+|.+.|++++|.+.++++.+... .+..++
T Consensus       137 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~  214 (450)
T 2y4t_A          137 LIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAF  214 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHH
Confidence            53            34889999999999999998765 44788999999999999999999999999987643 368899


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH------------HHHHHhcCchhHHHHHHHhh
Q 045498          149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV------------IQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       149 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l------------~~~~~~~~~~~~a~~~~~~m  206 (207)
                      ..+...|...|++++|...|+++.+.. +.+...+..+            ...+.+.|++++|.++++++
T Consensus       215 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~  283 (450)
T 2y4t_A          215 YKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV  283 (450)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999999999999999998762 2244444444            78899999999999999876

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.72  E-value=4.2e-15  Score=107.28  Aligned_cols=184  Identities=13%  Similarity=0.150  Sum_probs=111.9

Q ss_pred             hhHHHHHhhhhhhhHHHHH---HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-chhhHHHHHhhHhhhc
Q 045498           14 VYGIRINGMCKIREIDSAI---KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITA-ELVTYNPLIHDNWEKQ   89 (207)
Q Consensus        14 ~~~~ll~~~~~~g~~~~a~---~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~   89 (207)
                      ....+..+|...|+++.|+   +..-+|+..++..+...+...++.++|++.++++...+..| +...+..+-.++...|
T Consensus        36 ~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g  115 (291)
T 3mkr_A           36 RDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ  115 (291)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC
Confidence            3344566777777777777   23344556666667777777777777777777776655333 3344444556666677


Q ss_pred             ChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhH---HHHHHHHHhcCCHHHHHH
Q 045498           90 GRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY---NILINGLCKKGMIMEADK  166 (207)
Q Consensus        90 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~---~~li~~~~~~~~~~~a~~  166 (207)
                      ++++|...+++      +.+...+..+...+.+.|++++|.+.++.+.+..  |+....   ..++..+...|++++|..
T Consensus       116 ~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~  187 (291)
T 3mkr_A          116 NPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYY  187 (291)
T ss_dssp             CHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred             CHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHH
Confidence            77777776665      3455566666666777777777777777666653  332111   112233334466677777


Q ss_pred             HHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          167 LLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       167 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      +|+++.+. .+.+...++.+..++.+.|++++|.+.+++.
T Consensus       188 ~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a  226 (291)
T 3mkr_A          188 IFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEA  226 (291)
T ss_dssp             HHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            77766665 3445666666666666777777776666653

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.70  E-value=3e-14  Score=105.45  Aligned_cols=192  Identities=9%  Similarity=-0.096  Sum_probs=137.5

Q ss_pred             hhhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhH
Q 045498           12 FHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN   85 (207)
Q Consensus        12 ~~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~   85 (207)
                      ...+..+...+.+.|++++|.      -...+.+..++..+..++.+.|++++|+..|++..+.. +.+..++..+...+
T Consensus        64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~  142 (368)
T 1fch_A           64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSF  142 (368)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            344566666677777777766      12223355666666677777777777777777766553 33555666666666


Q ss_pred             hhhcChhhHHHHHHHHHhCCC-----------------------------------------------Cc---cHHHHHH
Q 045498           86 WEKQGRFSAMALLQTLERDKY-----------------------------------------------EL---NIEVYSL  115 (207)
Q Consensus        86 ~~~~~~~~a~~~~~~m~~~~~-----------------------------------------------~~---~~~~~~~  115 (207)
                      ...|++++|...+++..+...                                               .|   +..++..
T Consensus       143 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~  222 (368)
T 1fch_A          143 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG  222 (368)
T ss_dssp             HHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence            666666666666665544321                                               12   4677888


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCc
Q 045498          116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE  195 (207)
Q Consensus       116 li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~  195 (207)
                      +...+.+.|++++|...+++..+.... +...+..+...+.+.|++++|...|++..+.. +.+..++..+..++.+.|+
T Consensus       223 l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~  300 (368)
T 1fch_A          223 LGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGA  300 (368)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCC
Confidence            888999999999999999988876432 57788889999999999999999999988763 3467788889999999999


Q ss_pred             hhHHHHHHHhh
Q 045498          196 TDRASSFLKKN  206 (207)
Q Consensus       196 ~~~a~~~~~~m  206 (207)
                      +++|.+.++++
T Consensus       301 ~~~A~~~~~~a  311 (368)
T 1fch_A          301 HREAVEHFLEA  311 (368)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988765

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.69  E-value=1e-14  Score=102.53  Aligned_cols=191  Identities=15%  Similarity=0.052  Sum_probs=156.8

Q ss_pred             hhhhHHHHHhhhhhhhHHHHH-------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC--Ccc----hhhH
Q 045498           12 FHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI--TAE----LVTY   78 (207)
Q Consensus        12 ~~~~~~ll~~~~~~g~~~~a~-------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~----~~~~   78 (207)
                      ...|..+...+...|++++|.       ...  .+...|..+..++...|++++|...+++..+...  .++    ..++
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            456777888888889988888       333  6778888888899999999999999988876421  111    4678


Q ss_pred             HHHHhhHhhhcChhhHHHHHHHHHhCC-------------------------CCccHHHHHHHHHHHhcCCCHHHHHHHH
Q 045498           79 NPLIHDNWEKQGRFSAMALLQTLERDK-------------------------YELNIEVYSLVIDGLCRVGRWEEARKKL  133 (207)
Q Consensus        79 ~~ll~~~~~~~~~~~a~~~~~~m~~~~-------------------------~~~~~~~~~~li~~~~~~~~~~~a~~~~  133 (207)
                      ..+...+...|++++|...+++..+..                         .+.+...+..+...+...|++++|.+.+
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  162 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAY  162 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            888888888999999998888877632                         1234567888889999999999999999


Q ss_pred             HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          134 DQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       134 ~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      ++..+.... +...+..+...+.+.|++++|...++...+.. +.+..++..+..++...|++++|.+.+++.
T Consensus       163 ~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  233 (258)
T 3uq3_A          163 TEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAA  233 (258)
T ss_dssp             HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            999887543 67889999999999999999999999998873 346788999999999999999999999875

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.69  E-value=2.8e-14  Score=103.88  Aligned_cols=192  Identities=9%  Similarity=-0.136  Sum_probs=123.2

Q ss_pred             hhhhHHHHHhhhhhh-hHHHHH-----HcC-CCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhh
Q 045498           12 FHVYGIRINGMCKIR-EIDSAI-----KKG-ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD   84 (207)
Q Consensus        12 ~~~~~~ll~~~~~~g-~~~~a~-----~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~   84 (207)
                      ...+..+...+...| ++++|.     ... .+.+...|..+...+...|++++|+..|++..+.. +.+...+..+...
T Consensus        90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~  168 (330)
T 3hym_B           90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLE  168 (330)
T ss_dssp             THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHH
Confidence            445666666666666 666665     111 22245566666777777777777777777766553 2334555556666


Q ss_pred             HhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC--------CCCChhhHHHHHHHHH
Q 045498           85 NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG--------LVPGVVTYNILINGLC  156 (207)
Q Consensus        85 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g--------~~~~~~~~~~li~~~~  156 (207)
                      +...|++++|...+++..+.. +.+...+..+...+.+.|++++|...+++..+..        ......++..+...+.
T Consensus       169 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~  247 (330)
T 3hym_B          169 YGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR  247 (330)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHH
Confidence            777777777777777766654 3355667777777777777777777777665531        1223456777777777


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       157 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      +.|++++|...+++..+.. +.+..++..+..++.+.|++++|.+++++.
T Consensus       248 ~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  296 (330)
T 3hym_B          248 KLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTA  296 (330)
T ss_dssp             HTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            7777777777777776653 235566777777777777777777777664

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.69  E-value=7.9e-15  Score=101.37  Aligned_cols=165  Identities=14%  Similarity=-0.004  Sum_probs=147.3

Q ss_pred             CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHH
Q 045498           37 CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV  116 (207)
Q Consensus        37 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  116 (207)
                      ++++..+..+...+.+.|++++|+..|++..+.. +.+...+..+-.++...|++++|...+++..+.. +.+...+..+
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l   79 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL   79 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence            5677889999999999999999999999998875 5577889999999999999999999999998875 3367888999


Q ss_pred             HHHHhcC-----------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 045498          117 IDGLCRV-----------GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNT  185 (207)
Q Consensus       117 i~~~~~~-----------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~  185 (207)
                      ...+.+.           |++++|...+++..+..+. +...+..+...+...|++++|...|++..+..  .+...+..
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~  156 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA  156 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence            9999999           9999999999999987543 67788999999999999999999999999887  78899999


Q ss_pred             HHHHHHhcCchhHHHHHHHhh
Q 045498          186 VIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       186 l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      +..++...|++++|...+++.
T Consensus       157 la~~~~~~g~~~~A~~~~~~a  177 (217)
T 2pl2_A          157 LAELYLSMGRLDEALAQYAKA  177 (217)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHH
Confidence            999999999999999999875

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.69  E-value=2.5e-14  Score=96.07  Aligned_cols=164  Identities=13%  Similarity=0.032  Sum_probs=124.4

Q ss_pred             cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHH
Q 045498           39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID  118 (207)
Q Consensus        39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  118 (207)
                      ++.+|..+-..+.+.|++++|++.|++..+.. |-+..++..+..++...|++++|...+......... +...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence            56677888888888888888888888877764 445667777888888888888888888877766433 5566777777


Q ss_pred             HHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhH
Q 045498          119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR  198 (207)
Q Consensus       119 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~  198 (207)
                      .+...++++.+.+.+++..+.... +...+..+...+.+.|++++|...|++..+.. +.+..++..+..+|.+.|++++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence            778888888888888877776433 56677778888888888888888888877763 3356778888888888888888


Q ss_pred             HHHHHHhh
Q 045498          199 ASSFLKKN  206 (207)
Q Consensus       199 a~~~~~~m  206 (207)
                      |.+.|++.
T Consensus       160 A~~~~~~a  167 (184)
T 3vtx_A          160 AVKYFKKA  167 (184)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88888764

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.68  E-value=1.5e-14  Score=105.24  Aligned_cols=196  Identities=10%  Similarity=-0.069  Sum_probs=165.4

Q ss_pred             ccccchhhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHH
Q 045498            7 RFKGNFHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNP   80 (207)
Q Consensus         7 ~~~p~~~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~   80 (207)
                      ++..+...+..+...+...|++++|.      ....+.+...+..+...+.+.|++++|..+++++.+.. +.+..++..
T Consensus        17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~   95 (330)
T 3hym_B           17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA   95 (330)
T ss_dssp             ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred             hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence            45667778888999999999999999      22234455677778889999999999999999998864 456778899


Q ss_pred             HHhhHhhhc-ChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 045498           81 LIHDNWEKQ-GRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG  159 (207)
Q Consensus        81 ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~  159 (207)
                      +...+...| ++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...+...|
T Consensus        96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~  173 (330)
T 3hym_B           96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTN  173 (330)
T ss_dssp             HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHh
Confidence            999999999 9999999999998875 335778999999999999999999999999887543 5677888999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          160 MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       160 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      ++++|...+++..+.. +.+..++..+...+...|++++|..++++.
T Consensus       174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  219 (330)
T 3hym_B          174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDA  219 (330)
T ss_dssp             CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            9999999999998863 446788999999999999999999999875

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.68  E-value=2.9e-14  Score=102.86  Aligned_cols=189  Identities=7%  Similarity=0.011  Sum_probs=151.6

Q ss_pred             cccchhhhHHHHHhhhhhhhHHHHH-------HcCCCc-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHH
Q 045498            8 FKGNFHVYGIRINGMCKIREIDSAI-------KKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYN   79 (207)
Q Consensus         8 ~~p~~~~~~~ll~~~~~~g~~~~a~-------~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~   79 (207)
                      -.|+..++..+...+...|+.++|+       ..+..| ++..+..+...+.+.|++++|++.+++      +.+...+.
T Consensus        61 ~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~  134 (291)
T 3mkr_A           61 SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMA  134 (291)
T ss_dssp             SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHH
T ss_pred             CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHH
Confidence            3567778888889999999988887       334345 566677777899999999999999987      46778899


Q ss_pred             HHHhhHhhhcChhhHHHHHHHHHhCCCCccHH---HHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 045498           80 PLIHDNWEKQGRFSAMALLQTLERDKYELNIE---VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC  156 (207)
Q Consensus        80 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~  156 (207)
                      .+...+.+.|++++|...++++.+..  |+..   .....+..+...|++++|..+|+++.+.. +.+...++.+..++.
T Consensus       135 ~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~  211 (291)
T 3mkr_A          135 MTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHM  211 (291)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence            99999999999999999999998875  3322   11233455556789999999999999874 347888999999999


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhH-HHHHHHhh
Q 045498          157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR-ASSFLKKN  206 (207)
Q Consensus       157 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~m  206 (207)
                      +.|++++|...|++..+.. +-+..++..++..+...|+.++ +.++++++
T Consensus       212 ~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~  261 (291)
T 3mkr_A          212 AQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQL  261 (291)
T ss_dssp             HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            9999999999999988763 3477889999999999999876 56777654

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.67  E-value=2.7e-14  Score=103.82  Aligned_cols=190  Identities=10%  Similarity=-0.095  Sum_probs=124.0

Q ss_pred             hhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHH-----
Q 045498           13 HVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPL-----   81 (207)
Q Consensus        13 ~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----   81 (207)
                      .++..+...+...|++++|.      ....+.+..++..+...+...|++++|.+.+++..+.. +.+...+..+     
T Consensus        56 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~  134 (327)
T 3cv0_A           56 EAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADV  134 (327)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC---------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHH
Confidence            34444445555555555544      11112234445555555555555555555555555432 1122222222     


Q ss_pred             ---------Hh-hHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 045498           82 ---------IH-DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL  151 (207)
Q Consensus        82 ---------l~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l  151 (207)
                               .. .+...|++++|...+++..+.. +.+...+..+...+.+.|++++|.+.+++..+.... +...+..+
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l  212 (327)
T 3cv0_A          135 DIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKL  212 (327)
T ss_dssp             -----------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence                     11 2555566666666666655543 236778888889999999999999999998877432 57788899


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       152 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      ...+...|++++|...+++..+.. +.+..++..+..++...|++++|.+.++++
T Consensus       213 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  266 (327)
T 3cv0_A          213 GATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRA  266 (327)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            999999999999999999988763 346788889999999999999999998865

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.66  E-value=7.6e-14  Score=102.55  Aligned_cols=193  Identities=11%  Similarity=-0.019  Sum_probs=162.9

Q ss_pred             chhhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhh
Q 045498           11 NFHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD   84 (207)
Q Consensus        11 ~~~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~   84 (207)
                      |+..+..+...+...|++++|+      -...+.++.++..+...+...|++++|...|++..+.. +.+...+..+...
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~   80 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL   80 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence            4567888889999999999999      12234467889999999999999999999999998864 4466889999999


Q ss_pred             HhhhcChhhHHHHHHHHHhCCCC--ccHHHHHHH------------HHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 045498           85 NWEKQGRFSAMALLQTLERDKYE--LNIEVYSLV------------IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNI  150 (207)
Q Consensus        85 ~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~  150 (207)
                      +...|++++|...+++..+....  .+...+..+            ...+...|++++|.+.++++.+.... +...+..
T Consensus        81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~  159 (359)
T 3ieg_A           81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELREL  159 (359)
T ss_dssp             HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred             HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHHH
Confidence            99999999999999999886430  244455444            57889999999999999999887543 6788999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          151 LINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       151 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      +...+...|++++|...++...+.. +.+..++..+...+...|++++|.+.+++.
T Consensus       160 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  214 (359)
T 3ieg_A          160 RAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC  214 (359)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999999999999999998863 457789999999999999999999998865

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.64  E-value=1.5e-13  Score=94.61  Aligned_cols=167  Identities=11%  Similarity=-0.029  Sum_probs=144.5

Q ss_pred             CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHH
Q 045498           37 CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV  116 (207)
Q Consensus        37 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  116 (207)
                      +.++..+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+..++..+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l   82 (225)
T 2vq2_A            5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHH
Confidence            3456778899999999999999999999998864 4567789999999999999999999999988765 3467889999


Q ss_pred             HHHHhcC-CCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 045498          117 IDGLCRV-GRWEEARKKLDQLSEKGLVPG-VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN  194 (207)
Q Consensus       117 i~~~~~~-~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~  194 (207)
                      ...+... |++++|.+.++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~  161 (225)
T 2vq2_A           83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAG  161 (225)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcC
Confidence            9999999 999999999999988433333 6778889999999999999999999998863 335788999999999999


Q ss_pred             chhHHHHHHHhh
Q 045498          195 ETDRASSFLKKN  206 (207)
Q Consensus       195 ~~~~a~~~~~~m  206 (207)
                      ++++|.+++++.
T Consensus       162 ~~~~A~~~~~~~  173 (225)
T 2vq2_A          162 QLGDADYYFKKY  173 (225)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            999999999875

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.64  E-value=2.2e-14  Score=104.28  Aligned_cols=193  Identities=12%  Similarity=-0.071  Sum_probs=156.1

Q ss_pred             chhhhHHHHHhhhhhhhHHHHH-----HcCCCc-cHHhHHHH--------------HH-HHHhcCChhHHHHHHHHHHhC
Q 045498           11 NFHVYGIRINGMCKIREIDSAI-----KKGICL-DVFVYSSL--------------IN-GLCTFNRLKEAVELFDKMVAQ   69 (207)
Q Consensus        11 ~~~~~~~ll~~~~~~g~~~~a~-----~~~~~~-~~~~~~~l--------------l~-~~~~~~~~~~a~~~~~~m~~~   69 (207)
                      +..++..+...+...|++++|.     .....| +...+..+              .. .+...|++++|...++++.+.
T Consensus        88 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  167 (327)
T 3cv0_A           88 DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM  167 (327)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh
Confidence            5678888999999999999998     111122 22333333              22 377889999999999999887


Q ss_pred             CCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHH
Q 045498           70 GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN  149 (207)
Q Consensus        70 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~  149 (207)
                      . +.+..++..+...+...|++++|...+++..+.. +.+...+..+...+.+.|++++|.+.+++..+.... +...+.
T Consensus       168 ~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~  244 (327)
T 3cv0_A          168 N-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMY  244 (327)
T ss_dssp             S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred             C-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHH
Confidence            5 4577889999999999999999999999988775 346788999999999999999999999999887533 678899


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------ChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          150 ILINGLCKKGMIMEADKLLVQMKEKGCFP-----------DSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       150 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      .+...+.+.|++++|...+++..+.....           +..++..+..++.+.|++++|..++++.
T Consensus       245 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  312 (327)
T 3cv0_A          245 NMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN  312 (327)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            99999999999999999999988763221           4778999999999999999999988764

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.63  E-value=1.6e-13  Score=101.58  Aligned_cols=193  Identities=9%  Similarity=-0.090  Sum_probs=155.8

Q ss_pred             chhhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-------------
Q 045498           11 NFHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI-------------   71 (207)
Q Consensus        11 ~~~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-------------   71 (207)
                      +..++..+...+.+.|++++|.      ..-.+.+..++..+...+...|++++|...|+++.+...             
T Consensus        97 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  176 (368)
T 1fch_A           97 HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGA  176 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC------
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHh
Confidence            4567788888888888888887      111234677788888888888888888888877765321             


Q ss_pred             ----------------------------------Cc---chhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHH
Q 045498           72 ----------------------------------TA---ELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS  114 (207)
Q Consensus        72 ----------------------------------~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~  114 (207)
                                                        .|   +..++..+...+...|++++|...+++..+.. +.+...+.
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~  255 (368)
T 1fch_A          177 GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWN  255 (368)
T ss_dssp             ---------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             hhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHH
Confidence                                              12   45678888899999999999999999988764 34678999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----------ChhhHH
Q 045498          115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP----------DSTSFN  184 (207)
Q Consensus       115 ~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p----------~~~~~~  184 (207)
                      .+...+.+.|++++|.+.+++..+... .+...+..+..+|.+.|++++|...|+...+.....          ...+|.
T Consensus       256 ~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  334 (368)
T 1fch_A          256 KLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWS  334 (368)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHH
Confidence            999999999999999999999988743 367889999999999999999999999987652111          268899


Q ss_pred             HHHHHHHhcCchhHHHHHHHh
Q 045498          185 TVIQGFLVKNETDRASSFLKK  205 (207)
Q Consensus       185 ~l~~~~~~~~~~~~a~~~~~~  205 (207)
                      .+..++...|++++|..++++
T Consensus       335 ~l~~~~~~~g~~~~A~~~~~~  355 (368)
T 1fch_A          335 TLRLALSMLGQSDAYGAADAR  355 (368)
T ss_dssp             HHHHHHHHHTCGGGHHHHHTT
T ss_pred             HHHHHHHHhCChHhHHHhHHH
Confidence            999999999999999988764

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.62  E-value=1.2e-13  Score=102.36  Aligned_cols=193  Identities=9%  Similarity=-0.077  Sum_probs=152.8

Q ss_pred             chhhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-------------
Q 045498           11 NFHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI-------------   71 (207)
Q Consensus        11 ~~~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-------------   71 (207)
                      +..+|..+...|.+.|++++|+      -.-.+.+..+|..+..++.+.|++++|+..|+++.+...             
T Consensus        98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  177 (365)
T 4eqf_A           98 DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSP  177 (365)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC--------
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccch
Confidence            4567777788888888888777      111233466777777778888888777777777654210             


Q ss_pred             -----------------------------Cc---chhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHH
Q 045498           72 -----------------------------TA---ELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG  119 (207)
Q Consensus        72 -----------------------------~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  119 (207)
                                                   .|   +..++..+...+...|++++|...+++..+.. +.+..++..+..+
T Consensus       178 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~  256 (365)
T 4eqf_A          178 GLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGAT  256 (365)
T ss_dssp             -----------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence                                         11   56788889999999999999999999988875 3468899999999


Q ss_pred             HhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---C--------CChhhHHHHHH
Q 045498          120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC---F--------PDSTSFNTVIQ  188 (207)
Q Consensus       120 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~--------p~~~~~~~l~~  188 (207)
                      |.+.|++++|.+.+++..+.... +..++..+..+|.+.|++++|...|++..+...   .        .+..+|..+..
T Consensus       257 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~  335 (365)
T 4eqf_A          257 LANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRI  335 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHH
Confidence            99999999999999999887433 588899999999999999999999999876421   1        13678999999


Q ss_pred             HHHhcCchhHHHHHHHh
Q 045498          189 GFLVKNETDRASSFLKK  205 (207)
Q Consensus       189 ~~~~~~~~~~a~~~~~~  205 (207)
                      ++...|+.+.+.++.++
T Consensus       336 ~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          336 ALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHTCHHHHHHHHTT
T ss_pred             HHHHcCcHHHHHHHHHh
Confidence            99999999999887764

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.61  E-value=1.7e-13  Score=91.47  Aligned_cols=161  Identities=14%  Similarity=0.024  Sum_probs=90.6

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 045498           41 FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL  120 (207)
Q Consensus        41 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  120 (207)
                      ..|..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~   86 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            344455555556666666666666555432 2344555555556666666666666666655443 22445555555666


Q ss_pred             hcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHH
Q 045498          121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS  200 (207)
Q Consensus       121 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~  200 (207)
                      ...|++++|.+.+++..+... .+...+..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|.
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~  164 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL  164 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence            666666666666666555432 244555555566666666666666666655542 224455556666666666666666


Q ss_pred             HHHHh
Q 045498          201 SFLKK  205 (207)
Q Consensus       201 ~~~~~  205 (207)
                      +++++
T Consensus       165 ~~~~~  169 (186)
T 3as5_A          165 PHFKK  169 (186)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66554

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.61  E-value=2.7e-13  Score=95.29  Aligned_cols=164  Identities=13%  Similarity=-0.032  Sum_probs=143.5

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHH
Q 045498           40 VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG  119 (207)
Q Consensus        40 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  119 (207)
                      +..|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~  114 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence            6778889999999999999999999998764 4567889999999999999999999999988775 3367889999999


Q ss_pred             HhcCCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhH
Q 045498          120 LCRVGRWEEARKKLDQLSEKGLVP-GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR  198 (207)
Q Consensus       120 ~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~  198 (207)
                      +...|++++|.+.++++.+.+..| +...+..+...+...|++++|...+++..+.. +.+..++..+...+...|++++
T Consensus       115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~  193 (252)
T 2ho1_A          115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP  193 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence            999999999999999998833344 56778889999999999999999999998863 3367889999999999999999


Q ss_pred             HHHHHHhh
Q 045498          199 ASSFLKKN  206 (207)
Q Consensus       199 a~~~~~~m  206 (207)
                      |..+++++
T Consensus       194 A~~~~~~~  201 (252)
T 2ho1_A          194 ARQYYDLF  201 (252)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999875

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.61  E-value=7.2e-13  Score=97.32  Aligned_cols=192  Identities=13%  Similarity=0.046  Sum_probs=157.0

Q ss_pred             chhhhHHHHHhhhhhhhHHHHH-----HcC-CCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC---cchhhHHHH
Q 045498           11 NFHVYGIRINGMCKIREIDSAI-----KKG-ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGIT---AELVTYNPL   81 (207)
Q Consensus        11 ~~~~~~~ll~~~~~~g~~~~a~-----~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~---~~~~~~~~l   81 (207)
                      +..++..+...+...|++++|.     ... .+.+...+..+...+...|++++|...|++..+.. +   .+...+..+
T Consensus        36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l  114 (359)
T 3ieg_A           36 NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQL  114 (359)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHH
Confidence            4678888999999999999998     111 23366889999999999999999999999998864 2   344455444


Q ss_pred             ------------HhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHH
Q 045498           82 ------------IHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYN  149 (207)
Q Consensus        82 ------------l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~  149 (207)
                                  ...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...+.... +...+.
T Consensus       115 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~  192 (359)
T 3ieg_A          115 VKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFY  192 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence                        578889999999999999998775 347788999999999999999999999999987533 788999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH------------HHHHHHHhcCchhHHHHHHHhh
Q 045498          150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN------------TVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       150 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~------------~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      .+...+...|++++|...++...+.. +.+..++.            .+...+.+.|++++|.+.++++
T Consensus       193 ~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~  260 (359)
T 3ieg_A          193 KISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV  260 (359)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999999999999999998763 22333333            2366788999999999998875

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.60  E-value=6.4e-16  Score=115.56  Aligned_cols=166  Identities=13%  Similarity=0.042  Sum_probs=37.5

Q ss_pred             cchhhhHHHHHhhhhhhhHHHHHH-cCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhh
Q 045498           10 GNFHVYGIRINGMCKIREIDSAIK-KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK   88 (207)
Q Consensus        10 p~~~~~~~ll~~~~~~g~~~~a~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~   88 (207)
                      +++.+|..+..++.+.|++++|++ ---.+|...|..++.++...|++++|+.+++...+.  .+++.+.+.++.+|.+.
T Consensus        30 ~~~~vWs~La~A~l~~g~~~eAIdsfika~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Kl  107 (449)
T 1b89_A           30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKT  107 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHh
Confidence            344577777777777777777771 111346667777777777777777777766555443  33455566666666666


Q ss_pred             cChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 045498           89 QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL  168 (207)
Q Consensus        89 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~  168 (207)
                      |+++++.++++       .|+..+|+.+...|...|++++|...|..+         ..|..++.++.+.|++++|.+.+
T Consensus       108 g~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~  171 (449)
T 1b89_A          108 NRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGA  171 (449)
T ss_dssp             -CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHH
T ss_pred             CCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHH
Confidence            66666555553       244455555556666566666555555543         24555555555555555555555


Q ss_pred             HHHHHcCCCCChhhHHHHHHHHHhcCchhHH
Q 045498          169 VQMKEKGCFPDSTSFNTVIQGFLVKNETDRA  199 (207)
Q Consensus       169 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a  199 (207)
                      ..+      .++.+|..++.+|+..|+++.|
T Consensus       172 ~KA------~~~~~Wk~v~~aCv~~~ef~lA  196 (449)
T 1b89_A          172 RKA------NSTRTWKEVCFACVDGKEFRLA  196 (449)
T ss_dssp             HHH------TCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHc------CCchhHHHHHHHHHHcCcHHHH
Confidence            544      1444555555555444444444

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.60  E-value=3.2e-15  Score=111.82  Aligned_cols=172  Identities=11%  Similarity=0.116  Sum_probs=88.3

Q ss_pred             ccchhhhHHHHHhhhhhhhHHHHH-----HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHh
Q 045498            9 KGNFHVYGIRINGMCKIREIDSAI-----KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH   83 (207)
Q Consensus         9 ~p~~~~~~~ll~~~~~~g~~~~a~-----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~   83 (207)
                      .+|..+|..++.++...|++++|+     .....+++.+.+.++.+|.+.|+++++.++++       .|+..+|+.+..
T Consensus        58 a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd  130 (449)
T 1b89_A           58 ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGD  130 (449)
T ss_dssp             ---------------------------------------------------CHHHHTTTTT-------CC----------
T ss_pred             CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHH
Confidence            367788999999999999999988     22235557888899999999999999888874       367779999999


Q ss_pred             hHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 045498           84 DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME  163 (207)
Q Consensus        84 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~  163 (207)
                      .|...|.+++|...|..+         ..|..+..++.+.|++++|.+.++++      .++.+|..++.+|...|+++.
T Consensus       131 ~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~l  195 (449)
T 1b89_A          131 RCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRL  195 (449)
T ss_dssp             ------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHH
Confidence            999999999999999865         37889999999999999999999887      277899999999999999999


Q ss_pred             HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhhC
Q 045498          164 ADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM  207 (207)
Q Consensus       164 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~  207 (207)
                      |......     +..++.-...++..|.+.|++++|..+++..+
T Consensus       196 A~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL  234 (449)
T 1b89_A          196 AQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL  234 (449)
T ss_dssp             HHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            9655443     22344445578888999999999998888653

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.60  E-value=1.3e-13  Score=99.59  Aligned_cols=197  Identities=14%  Similarity=0.023  Sum_probs=157.4

Q ss_pred             cchhhhHHHHHhhhhhhhHHHHH-------H----c---CCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhC------
Q 045498           10 GNFHVYGIRINGMCKIREIDSAI-------K----K---GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ------   69 (207)
Q Consensus        10 p~~~~~~~ll~~~~~~g~~~~a~-------~----~---~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------   69 (207)
                      .+..++..+...+...|++++|.       .    .   ..+....++..+...+...|++++|...+++..+.      
T Consensus        25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  104 (311)
T 3nf1_A           25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG  104 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence            34568888999999999999988       1    1   23445677889999999999999999999998754      


Q ss_pred             C-CCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhC------CC-CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--
Q 045498           70 G-ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERD------KY-ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK--  139 (207)
Q Consensus        70 ~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--  139 (207)
                      + .+....++..+...+...|++++|...+++..+.      +. +.....+..+...+...|++++|.+.+++..+.  
T Consensus       105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~  184 (311)
T 3nf1_A          105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ  184 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            2 2334567888999999999999999999988764      22 224567888899999999999999999988764  


Q ss_pred             ----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----------------------------------------
Q 045498          140 ----GLVP-GVVTYNILINGLCKKGMIMEADKLLVQMKEK----------------------------------------  174 (207)
Q Consensus       140 ----g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----------------------------------------  174 (207)
                          +..| ...++..+...|...|++++|...+++..+.                                        
T Consensus       185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  264 (311)
T 3nf1_A          185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG  264 (311)
T ss_dssp             HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence                2122 3457888999999999999999999998753                                        


Q ss_pred             --------CCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          175 --------GCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       175 --------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                              ..+.+..++..+..+|.+.|++++|.+++++.
T Consensus       265 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  304 (311)
T 3nf1_A          265 GWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAA  304 (311)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence                    11224567888999999999999999999875

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.59  E-value=1.2e-13  Score=106.32  Aligned_cols=191  Identities=16%  Similarity=0.057  Sum_probs=97.3

Q ss_pred             hhhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhH
Q 045498           12 FHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN   85 (207)
Q Consensus        12 ~~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~   85 (207)
                      ..++..+...+...|++++|.      ....+.+..++..+...+...|++++|...|++..+.. +.+..++..+...+
T Consensus       270 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~  348 (514)
T 2gw1_A          270 VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLA  348 (514)
T ss_dssp             HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHH
Confidence            334444444444444444444      11112234445555555555555555555555555442 22344555555555


Q ss_pred             hhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHh---
Q 045498           86 WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV-PG----VVTYNILINGLCK---  157 (207)
Q Consensus        86 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~li~~~~~---  157 (207)
                      ...|++++|...+++..+.. +.+...+..+...+.+.|++++|.+.++.+.+.... ++    ...+..+...+..   
T Consensus       349 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  427 (514)
T 2gw1_A          349 YRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPT  427 (514)
T ss_dssp             TTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCC
T ss_pred             HHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhh
Confidence            55555555555555554432 223445555555555666666666665555443211 11    2255555566666   


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498          158 KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK  205 (207)
Q Consensus       158 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  205 (207)
                      .|++++|...++...+.. +.+..++..+...+.+.|++++|.+.+++
T Consensus       428 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~  474 (514)
T 2gw1_A          428 VENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEE  474 (514)
T ss_dssp             TTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            666666666666655542 22445555666666666666666666554

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.57  E-value=1.4e-12  Score=87.42  Aligned_cols=162  Identities=17%  Similarity=0.062  Sum_probs=139.4

Q ss_pred             cchhhhHHHHHhhhhhhhHHHHH-----HcCC-CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHh
Q 045498           10 GNFHVYGIRINGMCKIREIDSAI-----KKGI-CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH   83 (207)
Q Consensus        10 p~~~~~~~ll~~~~~~g~~~~a~-----~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~   83 (207)
                      -++.+|..+-..|.+.|++++|+     .... +-++.++..+..++.+.|++++|+..+....... +.+...+..+..
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~   81 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS   81 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence            35678999999999999999999     1222 3367889999999999999999999999998765 445677888888


Q ss_pred             hHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 045498           84 DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIME  163 (207)
Q Consensus        84 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~  163 (207)
                      .+...++++.+...+.+..+.. +.+...+..+...+.+.|++++|.+.|++..+.... +..++..+..+|.+.|++++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence            8999999999999999988765 336788999999999999999999999999987543 67889999999999999999


Q ss_pred             HHHHHHHHHHc
Q 045498          164 ADKLLVQMKEK  174 (207)
Q Consensus       164 a~~~~~~m~~~  174 (207)
                      |...|++..+.
T Consensus       160 A~~~~~~al~~  170 (184)
T 3vtx_A          160 AVKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhC
Confidence            99999998875

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.57  E-value=3e-13  Score=104.17  Aligned_cols=193  Identities=14%  Similarity=-0.051  Sum_probs=163.0

Q ss_pred             chhhhHHHHHhhhhhhhHHHHH-----HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhH
Q 045498           11 NFHVYGIRINGMCKIREIDSAI-----KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN   85 (207)
Q Consensus        11 ~~~~~~~ll~~~~~~g~~~~a~-----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~   85 (207)
                      +..++..+...+...|++++|.     .....|+..++..+...+...|++++|...+++..+.. +.+..++..+...+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~  314 (514)
T 2gw1_A          236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMN  314 (514)
T ss_dssp             HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHH
Confidence            4567888889999999999998     11223338889999999999999999999999998864 45677899999999


Q ss_pred             hhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 045498           86 WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD  165 (207)
Q Consensus        86 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~  165 (207)
                      ...|++++|...+++..+.... +...+..+...+.+.|++++|.+.++.+.+.... +...+..+...+.+.|++++|.
T Consensus       315 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~  392 (514)
T 2gw1_A          315 FILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKAL  392 (514)
T ss_dssp             HHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHH
Confidence            9999999999999999887533 6678999999999999999999999999887433 6778999999999999999999


Q ss_pred             HHHHHHHHcCC-CCC----hhhHHHHHHHHHh---cCchhHHHHHHHhh
Q 045498          166 KLLVQMKEKGC-FPD----STSFNTVIQGFLV---KNETDRASSFLKKN  206 (207)
Q Consensus       166 ~~~~~m~~~~~-~p~----~~~~~~l~~~~~~---~~~~~~a~~~~~~m  206 (207)
                      ..++.+.+... .++    ..++..+..++..   .|++++|.+.++++
T Consensus       393 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a  441 (514)
T 2gw1_A          393 KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA  441 (514)
T ss_dssp             HHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Confidence            99999876521 112    3389999999999   99999999999875

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.57  E-value=4.9e-13  Score=107.22  Aligned_cols=164  Identities=13%  Similarity=-0.051  Sum_probs=142.4

Q ss_pred             cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHH
Q 045498           39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID  118 (207)
Q Consensus        39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  118 (207)
                      ++.+|+.|-..+.+.|++++|++.|++..+.. +-+..++..+-.++.+.|++++|...|++..+... -+...|..+..
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~   85 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence            46789999999999999999999999998864 44567889999999999999999999999888753 36788999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhH
Q 045498          119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDR  198 (207)
Q Consensus       119 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~  198 (207)
                      +|.+.|++++|.+.|++..+.... +...|+.+..+|.+.|++++|...|++..+.. +-+...+..+..++...|++++
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~  163 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD  163 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence            999999999999999999887544 67889999999999999999999999988863 2356889999999999999999


Q ss_pred             HHHHHHhh
Q 045498          199 ASSFLKKN  206 (207)
Q Consensus       199 a~~~~~~m  206 (207)
                      |.+.+++.
T Consensus       164 A~~~~~ka  171 (723)
T 4gyw_A          164 YDERMKKL  171 (723)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99888764

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.57  E-value=1.8e-13  Score=95.47  Aligned_cols=166  Identities=13%  Similarity=0.030  Sum_probs=127.0

Q ss_pred             CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHH
Q 045498           37 CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV  116 (207)
Q Consensus        37 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  116 (207)
                      ..++..|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+
T Consensus        20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l   97 (243)
T 2q7f_A           20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGA   97 (243)
T ss_dssp             ----------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHH
Confidence            4456778888889999999999999999998864 4567888899999999999999999999988775 3467889999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCch
Q 045498          117 IDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNET  196 (207)
Q Consensus       117 i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~  196 (207)
                      ...+...|++++|.+.+++..+.... +...+..+...+.+.|++++|...+++..+.. +.+...+..+...+...|++
T Consensus        98 a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~  175 (243)
T 2q7f_A           98 GNVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGML  175 (243)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCH
Confidence            99999999999999999999887543 67889999999999999999999999998763 34678899999999999999


Q ss_pred             hHHHHHHHhh
Q 045498          197 DRASSFLKKN  206 (207)
Q Consensus       197 ~~a~~~~~~m  206 (207)
                      ++|.++++++
T Consensus       176 ~~A~~~~~~~  185 (243)
T 2q7f_A          176 DEALSQFAAV  185 (243)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999875

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.56  E-value=6e-13  Score=93.49  Aligned_cols=165  Identities=12%  Similarity=0.068  Sum_probs=141.5

Q ss_pred             cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCC--cc----HHH
Q 045498           39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYE--LN----IEV  112 (207)
Q Consensus        39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~----~~~  112 (207)
                      ....|..+...+...|++++|+..|++..+..  .+..++..+..++...|++++|...+++..+....  ++    ..+
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~   81 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS   81 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence            35678889999999999999999999999877  77889999999999999999999999998765322  11    578


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHhCC------------------------CCC-ChhhHHHHHHHHHhcCCHHHHHHH
Q 045498          113 YSLVIDGLCRVGRWEEARKKLDQLSEKG------------------------LVP-GVVTYNILINGLCKKGMIMEADKL  167 (207)
Q Consensus       113 ~~~li~~~~~~~~~~~a~~~~~~~~~~g------------------------~~~-~~~~~~~li~~~~~~~~~~~a~~~  167 (207)
                      +..+...+.+.|++++|.+.+++..+..                        ..| +...+..+...+...|++++|...
T Consensus        82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  161 (258)
T 3uq3_A           82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKA  161 (258)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHH
Confidence            8999999999999999999999988732                        122 355778888999999999999999


Q ss_pred             HHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          168 LVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       168 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      +++..+.. +.+..++..+..++...|++++|.+.+++.
T Consensus       162 ~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  199 (258)
T 3uq3_A          162 YTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKA  199 (258)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            99998873 346788999999999999999999999875

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.55  E-value=1e-12  Score=101.93  Aligned_cols=195  Identities=15%  Similarity=0.012  Sum_probs=131.6

Q ss_pred             ccchhhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHH
Q 045498            9 KGNFHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI   82 (207)
Q Consensus         9 ~p~~~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll   82 (207)
                      .|+..++..+...+...|++++|.      ....+.+..+|..+...+...|++++|...|++..+.. +.+..++..+.
T Consensus       273 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la  351 (537)
T 3fp2_A          273 HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLA  351 (537)
T ss_dssp             CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            455566666777777777777776      11123346667777777777777777777777777654 33456677777


Q ss_pred             hhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC-----CChhhHHHHHHHHHh
Q 045498           83 HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV-----PGVVTYNILINGLCK  157 (207)
Q Consensus        83 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~-----~~~~~~~~li~~~~~  157 (207)
                      .++...|++++|...+++..+.. +.+...+..+...+.+.|++++|.+.+++..+....     .....+......+.+
T Consensus       352 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~  430 (537)
T 3fp2_A          352 CLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILAR  430 (537)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHH
Confidence            77777777777777777776654 334566777777777777777777777776554211     111223344455666


Q ss_pred             c----------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          158 K----------GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       158 ~----------~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      .          |++++|...|+...+.. +.+..++..+..++.+.|++++|.+.+++.
T Consensus       431 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  488 (537)
T 3fp2_A          431 QSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDS  488 (537)
T ss_dssp             HHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            6          78888888888777652 335677888888888889999888888764

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.54  E-value=3.5e-13  Score=95.70  Aligned_cols=191  Identities=14%  Similarity=-0.135  Sum_probs=117.1

Q ss_pred             chhhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhh
Q 045498           11 NFHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD   84 (207)
Q Consensus        11 ~~~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~   84 (207)
                      +..++..+...+...|++++|.      -...+.+..+|..+...+...|++++|...|++..+.. +.+..++..+...
T Consensus        42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~  120 (275)
T 1xnf_A           42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIA  120 (275)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHH
Confidence            3456667777777777777776      11122346667777777777777777777777776653 3345667777777


Q ss_pred             HhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 045498           85 NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA  164 (207)
Q Consensus        85 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a  164 (207)
                      +...|++++|...+++..+..  |+.......+..+...|++++|...++....... ++... ..++..+...++.++|
T Consensus       121 ~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~a  196 (275)
T 1xnf_A          121 LYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD-KEQWG-WNIVEFYLGNISEQTL  196 (275)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC-CCSTH-HHHHHHHTTSSCHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-cchHH-HHHHHHHHHhcCHHHH
Confidence            777777777777777776643  2322333333444555777777777765555421 22222 2345555555666666


Q ss_pred             HHHHHHHHHcCCC--C-ChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          165 DKLLVQMKEKGCF--P-DSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       165 ~~~~~~m~~~~~~--p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      ...++...+....  | +..++..+...+.+.|++++|...+++.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  241 (275)
T 1xnf_A          197 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA  241 (275)
T ss_dssp             HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            6666655433110  0 1466777788888888888888887764

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.53  E-value=1.8e-11  Score=87.11  Aligned_cols=181  Identities=12%  Similarity=-0.086  Sum_probs=90.1

Q ss_pred             hhhHHHHHhhhhhhhHHHHH---HcCC-CccHHhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCcchhhHHHHHhh
Q 045498           13 HVYGIRINGMCKIREIDSAI---KKGI-CLDVFVYSSLINGLCT----FNRLKEAVELFDKMVAQGITAELVTYNPLIHD   84 (207)
Q Consensus        13 ~~~~~ll~~~~~~g~~~~a~---~~~~-~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~   84 (207)
                      .++..+-..+...|++++|.   .... +-++..+..+-..+..    .+++++|+..|++..+.+   +...+..+-..
T Consensus         7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~   83 (273)
T 1ouv_A            7 KELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNL   83 (273)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence            34444455555555555555   1111 2233444555555555    555555555555555543   33444445555


Q ss_pred             Hhh----hcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhc----CCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 045498           85 NWE----KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR----VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC  156 (207)
Q Consensus        85 ~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~  156 (207)
                      +..    .+++++|...+++..+.+   +...+..+-..|..    .+++++|.+.+++..+.+   +...+..+...|.
T Consensus        84 ~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~  157 (273)
T 1ouv_A           84 YYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYD  157 (273)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred             HhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHH
Confidence            555    555555555555555443   33444555555555    555555555555555543   3344444444554


Q ss_pred             h----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCchhHHHHHHHh
Q 045498          157 K----KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV----KNETDRASSFLKK  205 (207)
Q Consensus       157 ~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~  205 (207)
                      .    .+++++|...|+...+.+   +...+..+...|..    .+++++|.+++++
T Consensus       158 ~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~  211 (273)
T 1ouv_A          158 AGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSK  211 (273)
T ss_dssp             HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHH
T ss_pred             cCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHH
Confidence            4    555555555555554442   33444445555555    5555555555543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.53  E-value=7.2e-12  Score=83.44  Aligned_cols=160  Identities=16%  Similarity=0.051  Sum_probs=137.3

Q ss_pred             hhhhHHHHHhhhhhhhHHHHH---H---cCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhH
Q 045498           12 FHVYGIRINGMCKIREIDSAI---K---KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN   85 (207)
Q Consensus        12 ~~~~~~ll~~~~~~g~~~~a~---~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~   85 (207)
                      ...|..+...+...|++++|.   .   ...+.+..++..+...+...|++++|...+++..+.. +.+..++..+...+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~   86 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            356777888899999999999   2   2223467889999999999999999999999998764 45677888899999


Q ss_pred             hhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 045498           86 WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD  165 (207)
Q Consensus        86 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~  165 (207)
                      ...|++++|...+++..+.. +.+...+..+...+.+.|++++|.+.+++..+... .+...+..+...+...|++++|.
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~  164 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEAL  164 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999988775 44778889999999999999999999999988753 36788999999999999999999


Q ss_pred             HHHHHHHHc
Q 045498          166 KLLVQMKEK  174 (207)
Q Consensus       166 ~~~~~m~~~  174 (207)
                      ..++...+.
T Consensus       165 ~~~~~~~~~  173 (186)
T 3as5_A          165 PHFKKANEL  173 (186)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHc
Confidence            999998765

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.53  E-value=2.3e-12  Score=91.42  Aligned_cols=190  Identities=10%  Similarity=0.003  Sum_probs=149.7

Q ss_pred             hhhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchh----hHHHH
Q 045498           12 FHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELV----TYNPL   81 (207)
Q Consensus        12 ~~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~l   81 (207)
                      ...+......+...|++++|+      -...+.+...+..+..++...|++++|+..+++..+..  ++..    +|..+
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~l   80 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEYY   80 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHHH
Confidence            345566778888999999998      12223345688899999999999999999999998843  3333    37888


Q ss_pred             HhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 045498           82 IHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI  161 (207)
Q Consensus        82 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~  161 (207)
                      ...+...|++++|...+++..+... .+..++..+...|...|++++|.+.+++..+.... +...+..+...+...+++
T Consensus        81 g~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~  158 (272)
T 3u4t_A           81 GKILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEY  158 (272)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999888753 36678999999999999999999999999887433 566777777344445699


Q ss_pred             HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCc---hhHHHHHHHhh
Q 045498          162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE---TDRASSFLKKN  206 (207)
Q Consensus       162 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~m  206 (207)
                      ++|...|++..+.. +.+...+..+..++...|+   +++|...+++.
T Consensus       159 ~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  205 (272)
T 3u4t_A          159 VKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKL  205 (272)
T ss_dssp             HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence            99999999998863 3346778888888888887   77777777654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.52  E-value=1.2e-12  Score=100.64  Aligned_cols=191  Identities=8%  Similarity=-0.127  Sum_probs=140.0

Q ss_pred             chhhhHHHHHhhhhhhhH-HHHH-----HcCC-CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHh
Q 045498           11 NFHVYGIRINGMCKIREI-DSAI-----KKGI-CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIH   83 (207)
Q Consensus        11 ~~~~~~~ll~~~~~~g~~-~~a~-----~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~   83 (207)
                      +...+..+...+...|++ ++|+     .... +-+...|..+..+|.+.|++++|...|++..+..  |+...+..+-.
T Consensus       101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg~  178 (474)
T 4abn_A          101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLSM  178 (474)
T ss_dssp             CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHHH
Confidence            456677777777788888 7777     1112 2346778888888888888888888888887764  55677777777


Q ss_pred             hHhhh---------cChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHhCCCC--CC
Q 045498           84 DNWEK---------QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV--------GRWEEARKKLDQLSEKGLV--PG  144 (207)
Q Consensus        84 ~~~~~---------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------~~~~~a~~~~~~~~~~g~~--~~  144 (207)
                      ++...         |++++|...+++..+.. +-+...|..+..+|...        |++++|.+.|++..+....  -+
T Consensus       179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  257 (474)
T 4abn_A          179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN  257 (474)
T ss_dssp             HHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred             HHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC
Confidence            78777         88888888888877764 23567777777787777        7888888888888776320  26


Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498          145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK  205 (207)
Q Consensus       145 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  205 (207)
                      ...|..+..+|...|++++|...|++..+.. +.+..++..+..++...|++++|.+.+++
T Consensus       258 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~  317 (474)
T 4abn_A          258 PDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK  317 (474)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            7778888888888888888888888877663 23556677777888888888888765543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.51  E-value=2.7e-11  Score=87.95  Aligned_cols=192  Identities=10%  Similarity=-0.010  Sum_probs=149.9

Q ss_pred             chhhhHHHHHhhhh-------hhhH-------HHHH-----HcC-CCc-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 045498           11 NFHVYGIRINGMCK-------IREI-------DSAI-----KKG-ICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQ   69 (207)
Q Consensus        11 ~~~~~~~ll~~~~~-------~g~~-------~~a~-----~~~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~   69 (207)
                      ++..|..+...+..       .|++       ++|.     ... +.| +...|..+...+.+.|++++|..+|++..+.
T Consensus        49 ~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  128 (308)
T 2ond_A           49 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI  128 (308)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence            34466666666543       3664       6666     222 344 4568999999999999999999999999985


Q ss_pred             CCCcc-hh-hHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHH-hcCCCHHHHHHHHHHHHhCCCCCChh
Q 045498           70 GITAE-LV-TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL-CRVGRWEEARKKLDQLSEKGLVPGVV  146 (207)
Q Consensus        70 ~~~~~-~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~-~~~~~~~~a~~~~~~~~~~g~~~~~~  146 (207)
                        .|+ .. +|..+...+.+.|++++|..+|++..+... .+...|....... ...|++++|.++|+...+.... +..
T Consensus       129 --~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~  204 (308)
T 2ond_A          129 --EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPE  204 (308)
T ss_dssp             --SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHH
T ss_pred             --cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHH
Confidence              443 33 799999999999999999999999988753 3445555443332 2379999999999999876433 678


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC--ChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          147 TYNILINGLCKKGMIMEADKLLVQMKEKG-CFP--DSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       147 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      .|..++..+.+.|++++|..+|++..... ..|  ....|..++....+.|+.++|..+++++
T Consensus       205 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a  267 (308)
T 2ond_A          205 YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            89999999999999999999999999863 455  4567888899999999999999998875

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.51  E-value=6.6e-12  Score=87.02  Aligned_cols=154  Identities=10%  Similarity=-0.040  Sum_probs=103.0

Q ss_pred             cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHH
Q 045498           39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID  118 (207)
Q Consensus        39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  118 (207)
                      |+..+......+.+.|++++|+..|++..+...+++...+..+..++...|++++|...+++..+.... +...+..+..
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~   84 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA   84 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence            456666677777777777777777777776653355566666777777777777777777777665422 5566777777


Q ss_pred             HHhcCCCHHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHH
Q 045498          119 GLCRVGRWEEARKKLDQLSEKGLVPGV-------VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD---STSFNTVIQ  188 (207)
Q Consensus       119 ~~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~  188 (207)
                      ++.+.|++++|.+.+++..+.... +.       ..|..+-..+...|++++|...|+...+.  .|+   ..++..+..
T Consensus        85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~  161 (228)
T 4i17_A           85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV  161 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence            777777777777777777665322 23       34666666677777777777777777654  343   456666666


Q ss_pred             HHHhcCch
Q 045498          189 GFLVKNET  196 (207)
Q Consensus       189 ~~~~~~~~  196 (207)
                      ++...|+.
T Consensus       162 ~~~~~~~~  169 (228)
T 4i17_A          162 LFYNNGAD  169 (228)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66666666

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.51  E-value=2.9e-12  Score=99.31  Aligned_cols=190  Identities=14%  Similarity=-0.034  Sum_probs=150.9

Q ss_pred             hhHHHHHhhhhhhhHHHHH-----HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhh
Q 045498           14 VYGIRINGMCKIREIDSAI-----KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK   88 (207)
Q Consensus        14 ~~~~ll~~~~~~g~~~~a~-----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~   88 (207)
                      ++..+...+...|++++|.     .....|+..++..+...+...|++++|...|++..+.. +.+..++..+...+...
T Consensus       245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~  323 (537)
T 3fp2_A          245 ALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFIL  323 (537)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhc
Confidence            4666667777888888888     22335567888889999999999999999999998765 45677888999999999


Q ss_pred             cChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 045498           89 QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL  168 (207)
Q Consensus        89 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~  168 (207)
                      |++++|...+++..+... .+...+..+...+.+.|++++|.+.+++..+.... +...+..+...+...|++++|...|
T Consensus       324 ~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~  401 (537)
T 3fp2_A          324 QDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQY  401 (537)
T ss_dssp             TCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHH
Confidence            999999999999887653 35678888999999999999999999998887533 5778889999999999999999999


Q ss_pred             HHHHHcC-----CCCChhhHHHHHHHHHhc----------CchhHHHHHHHhh
Q 045498          169 VQMKEKG-----CFPDSTSFNTVIQGFLVK----------NETDRASSFLKKN  206 (207)
Q Consensus       169 ~~m~~~~-----~~p~~~~~~~l~~~~~~~----------~~~~~a~~~~~~m  206 (207)
                      +.+.+..     .......+..+...+...          |++++|...+++.
T Consensus       402 ~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  454 (537)
T 3fp2_A          402 DIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKA  454 (537)
T ss_dssp             HHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHH
Confidence            9987642     111222344555677777          9999999998875

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.50  E-value=3.5e-12  Score=90.48  Aligned_cols=192  Identities=11%  Similarity=-0.014  Sum_probs=153.2

Q ss_pred             hhhhHHHHHhhhhhhhHHHHH-----HcCCCcc----HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHH
Q 045498           12 FHVYGIRINGMCKIREIDSAI-----KKGICLD----VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI   82 (207)
Q Consensus        12 ~~~~~~ll~~~~~~g~~~~a~-----~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll   82 (207)
                      ...+..+...|...|++++|+     .....++    ..+|..+...+...|++++|+..|++..+.. +.+..++..+.
T Consensus        37 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~  115 (272)
T 3u4t_A           37 PYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIG  115 (272)
T ss_dssp             STTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHH
Confidence            448888889999999999998     1112233    3348899999999999999999999998864 44668899999


Q ss_pred             hhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC--
Q 045498           83 HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM--  160 (207)
Q Consensus        83 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~--  160 (207)
                      ..+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.+++..+.... +...+..+...+...|+  
T Consensus       116 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~  193 (272)
T 3u4t_A          116 SYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDT  193 (272)
T ss_dssp             HHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcch
Confidence            99999999999999999988774 335667777772444455999999999999987433 46778888888888888  


Q ss_pred             -HHHHHHHHHHHHHcC-CCCC------hhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          161 -IMEADKLLVQMKEKG-CFPD------STSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       161 -~~~a~~~~~~m~~~~-~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                       +++|...+++..+.. -.|+      ..+|..+...|...|++++|.+++++.
T Consensus       194 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  247 (272)
T 3u4t_A          194 KQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNI  247 (272)
T ss_dssp             SSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence             888999998887642 1233      257888999999999999999999875

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.50  E-value=2.4e-12  Score=91.35  Aligned_cols=180  Identities=12%  Similarity=-0.094  Sum_probs=144.1

Q ss_pred             hhhhhhhHHHHH-------HcCC---CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcC
Q 045498           21 GMCKIREIDSAI-------KKGI---CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG   90 (207)
Q Consensus        21 ~~~~~g~~~~a~-------~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~   90 (207)
                      .....|++++|+       ....   +.+..++..+...+...|++++|...|++..+.. +.+..++..+...+...|+
T Consensus        14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~   92 (275)
T 1xnf_A           14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGN   92 (275)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTC
T ss_pred             ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccC
Confidence            445668888877       2211   2257789999999999999999999999998875 4567899999999999999


Q ss_pred             hhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 045498           91 RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ  170 (207)
Q Consensus        91 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  170 (207)
                      +++|...+++..+.. +.+...+..+...+.+.|++++|.+.++++.+..  |+.......+..+...|++++|...++.
T Consensus        93 ~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~  169 (275)
T 1xnf_A           93 FDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQ  169 (275)
T ss_dssp             HHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            999999999998865 3367889999999999999999999999998863  5555555556666778999999999988


Q ss_pred             HHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          171 MKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       171 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      ..... +++... ..+...+...++.++|.+.+++.
T Consensus       170 ~~~~~-~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~  203 (275)
T 1xnf_A          170 HFEKS-DKEQWG-WNIVEFYLGNISEQTLMERLKAD  203 (275)
T ss_dssp             HHHHS-CCCSTH-HHHHHHHTTSSCHHHHHHHHHHH
T ss_pred             HHhcC-CcchHH-HHHHHHHHHhcCHHHHHHHHHHH
Confidence            87762 334444 44777788888889998888764

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.49  E-value=5.5e-12  Score=96.95  Aligned_cols=166  Identities=12%  Similarity=-0.015  Sum_probs=146.7

Q ss_pred             CccHHhHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHH
Q 045498           37 CLDVFVYSSLINGLCTFNRL-KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL  115 (207)
Q Consensus        37 ~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~  115 (207)
                      +.+...+..+-..+...|++ ++|+..|++..+.. +.+...|..+-.++...|++++|...|++..+..  |+...+..
T Consensus        99 ~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~  175 (474)
T 4abn_A           99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQN  175 (474)
T ss_dssp             CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHH
T ss_pred             chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHH
Confidence            44788899999999999999 99999999998875 4467899999999999999999999999998875  56788999


Q ss_pred             HHHHHhcC---------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc--------CCHHHHHHHHHHHHHcCCC-
Q 045498          116 VIDGLCRV---------GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK--------GMIMEADKLLVQMKEKGCF-  177 (207)
Q Consensus       116 li~~~~~~---------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--------~~~~~a~~~~~~m~~~~~~-  177 (207)
                      +...+...         |++++|.+.+++..+.... +...|..+..+|...        |++++|...|++..+.... 
T Consensus       176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  254 (474)
T 4abn_A          176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA  254 (474)
T ss_dssp             HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc
Confidence            99999999         9999999999999987544 688899999999998        9999999999999986210 


Q ss_pred             -CChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          178 -PDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       178 -p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                       -+...|..+..+|...|++++|.+.+++.
T Consensus       255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  284 (474)
T 4abn_A          255 SSNPDLHLNRATLHKYEESYGEALEGFSQA  284 (474)
T ss_dssp             GGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence             37889999999999999999999999875

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.49  E-value=7.7e-11  Score=83.84  Aligned_cols=181  Identities=9%  Similarity=-0.137  Sum_probs=155.5

Q ss_pred             chhhhHHHHHhhhh----hhhHHHHH-------HcCCCccHHhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCcch
Q 045498           11 NFHVYGIRINGMCK----IREIDSAI-------KKGICLDVFVYSSLINGLCT----FNRLKEAVELFDKMVAQGITAEL   75 (207)
Q Consensus        11 ~~~~~~~ll~~~~~----~g~~~~a~-------~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~   75 (207)
                      +...+..+...|..    .+++++|.       ..+   ++..+..+-..|..    .+++++|+..|++..+.+   +.
T Consensus        37 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~  110 (273)
T 1ouv_A           37 ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YA  110 (273)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred             CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---Cc
Confidence            34567778888888    99999988       333   77888999999999    999999999999999876   66


Q ss_pred             hhHHHHHhhHhh----hcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhc----CCCHHHHHHHHHHHHhCCCCCChhh
Q 045498           76 VTYNPLIHDNWE----KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR----VGRWEEARKKLDQLSEKGLVPGVVT  147 (207)
Q Consensus        76 ~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~  147 (207)
                      ..+..+-..+..    .+++++|...+++..+.+   +...+..+...|..    .+++++|...+++..+.+   +...
T Consensus       111 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a  184 (273)
T 1ouv_A          111 EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPG  184 (273)
T ss_dssp             HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred             cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence            788888888888    999999999999998876   55677778888887    899999999999998874   5678


Q ss_pred             HHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCchhHHHHHHHhh
Q 045498          148 YNILINGLCK----KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV----KNETDRASSFLKKN  206 (207)
Q Consensus       148 ~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m  206 (207)
                      +..+...|..    .+++++|...|+...+.+   +...+..+...|.+    .+++++|.+++++.
T Consensus       185 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a  248 (273)
T 1ouv_A          185 CFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKG  248 (273)
T ss_dssp             HHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence            8889999999    999999999999998874   36778889999998    99999999999864

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.48  E-value=4.2e-13  Score=95.38  Aligned_cols=170  Identities=16%  Similarity=0.001  Sum_probs=132.4

Q ss_pred             CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhC------CC-CcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCC----
Q 045498           37 CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ------GI-TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK----  105 (207)
Q Consensus        37 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----  105 (207)
                      +....++..+...+...|++++|+..+++..+.      +- +....++..+...+...|++++|...+++..+..    
T Consensus        40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  119 (283)
T 3edt_B           40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL  119 (283)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence            335677888999999999999999999988754      22 2345678888889999999999999998876541    


Q ss_pred             ---CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC------CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 045498          106 ---YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK------GLVP-GVVTYNILINGLCKKGMIMEADKLLVQMKEK-  174 (207)
Q Consensus       106 ---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-  174 (207)
                         .+....++..+...+...|++++|.+.+++..+.      +-.| ...++..+...|...|++++|...+++..+. 
T Consensus       120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  199 (283)
T 3edt_B          120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRA  199 (283)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence               1234677888889999999999999999888765      1122 3567888889999999999999999887753 


Q ss_pred             -----------------------------------------------CCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          175 -----------------------------------------------GCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       175 -----------------------------------------------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                                                                     ..+....++..+...|...|++++|.+++++.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  278 (283)
T 3edt_B          200 HEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA  278 (283)
T ss_dssp             HHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                                                           11123457888999999999999999999875

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.47  E-value=1.1e-11  Score=92.68  Aligned_cols=189  Identities=10%  Similarity=0.042  Sum_probs=154.6

Q ss_pred             hhhHHHHHhhhhhhhHHHHH-----HcCCCc-cHHhHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCcchhhHHHHHhhH
Q 045498           13 HVYGIRINGMCKIREIDSAI-----KKGICL-DVFVYSSLINGLCTFNR-LKEAVELFDKMVAQGITAELVTYNPLIHDN   85 (207)
Q Consensus        13 ~~~~~ll~~~~~~g~~~~a~-----~~~~~~-~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~   85 (207)
                      ..|..+...+.+.|++++|+     .....| +...|+.+-.++.+.|+ +++|+..|++..+.. +-+...|+.+-.++
T Consensus        98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~  176 (382)
T 2h6f_A           98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV  176 (382)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence            46777888888889999988     222233 57788899999999997 999999999998875 45678899999999


Q ss_pred             hhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCCHHHH
Q 045498           86 WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK-KGMIMEA  164 (207)
Q Consensus        86 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~~~~~~a  164 (207)
                      ...|++++|+..+++..+.... +...|..+..++.+.|++++|...++++.+.... +...|+.+..++.+ .|..++|
T Consensus       177 ~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA  254 (382)
T 2h6f_A          177 EWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA  254 (382)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred             HHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHH
Confidence            9999999999999999887633 7888999999999999999999999999988654 78889999999988 6665777


Q ss_pred             -----HHHHHHHHHcCCCCChhhHHHHHHHHHhcC--chhHHHHHHHh
Q 045498          165 -----DKLLVQMKEKGCFPDSTSFNTVIQGFLVKN--ETDRASSFLKK  205 (207)
Q Consensus       165 -----~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~  205 (207)
                           ...|++..+.. +-+...|..+...+...|  ++++|.+.+++
T Consensus       255 ~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~  301 (382)
T 2h6f_A          255 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLD  301 (382)
T ss_dssp             HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHH
Confidence                 47788877753 235678888888888877  68888887765

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.44  E-value=3.6e-11  Score=75.68  Aligned_cols=130  Identities=16%  Similarity=0.122  Sum_probs=103.6

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHh
Q 045498           42 VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC  121 (207)
Q Consensus        42 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  121 (207)
                      .|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...+++..+.+ +.+...+..+...+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence            56777888888899999999999887764 3456677778888888889999999888887765 335667788888888


Q ss_pred             cCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498          122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK  174 (207)
Q Consensus       122 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  174 (207)
                      ..|++++|.+.++++.+.... +...+..+...+.+.|++++|...++++.+.
T Consensus        81 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            888999998888888776432 5677788888888888888888888887765

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.44  E-value=2.5e-11  Score=90.62  Aligned_cols=190  Identities=9%  Similarity=0.013  Sum_probs=156.6

Q ss_pred             hhhhHHHHHhhhhhhh-HHHHH-----HcCC-CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhh
Q 045498           12 FHVYGIRINGMCKIRE-IDSAI-----KKGI-CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD   84 (207)
Q Consensus        12 ~~~~~~ll~~~~~~g~-~~~a~-----~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~   84 (207)
                      ...|+.+..++...|+ +++|+     .... +-+...|+.+-.++.+.|++++|+..|++..+.. +-+...|..+-.+
T Consensus       131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~  209 (382)
T 2h6f_A          131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWV  209 (382)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHH
Confidence            4678888899999997 99998     1222 3367889999999999999999999999999875 5577899999999


Q ss_pred             HhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhc-CCCHHHH-----HHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 045498           85 NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR-VGRWEEA-----RKKLDQLSEKGLVPGVVTYNILINGLCKK  158 (207)
Q Consensus        85 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~~~~~~a-----~~~~~~~~~~g~~~~~~~~~~li~~~~~~  158 (207)
                      +...|++++|+..+++..+.... +...|+.+..++.+ .|..++|     .+.+++..+.... +...|+.+...+...
T Consensus       210 ~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~  287 (382)
T 2h6f_A          210 IQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDR  287 (382)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTT
T ss_pred             HHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHcc
Confidence            99999999999999999988643 78899999999998 6665777     5888888887544 677899989989888


Q ss_pred             C--CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC---------chhHHHHHHHhh
Q 045498          159 G--MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN---------ETDRASSFLKKN  206 (207)
Q Consensus       159 ~--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~---------~~~~a~~~~~~m  206 (207)
                      |  ++++|.+.+.++ +. .+.+...+..+..+|.+.|         .+++|.++++++
T Consensus       288 g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l  344 (382)
T 2h6f_A          288 GLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL  344 (382)
T ss_dssp             CGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             CccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence            8  689999999888 33 3446678889999998874         358999998875

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.43  E-value=1.2e-11  Score=89.20  Aligned_cols=170  Identities=15%  Similarity=0.045  Sum_probs=138.2

Q ss_pred             CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhC-----
Q 045498           37 CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ-------GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERD-----  104 (207)
Q Consensus        37 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----  104 (207)
                      +.+..++..+...+...|++++|..+|++..+.       ..+....++..+...+...|++++|...+++..+.     
T Consensus        24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  103 (311)
T 3nf1_A           24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL  103 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence            345677899999999999999999999998763       23445567888999999999999999999987754     


Q ss_pred             -C-CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC------CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 045498          105 -K-YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK------GLVP-GVVTYNILINGLCKKGMIMEADKLLVQMKEK-  174 (207)
Q Consensus       105 -~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-  174 (207)
                       + .+....++..+...+...|++++|.+.+++..+.      +..| ....+..+...+...|++++|..++++..+. 
T Consensus       104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  183 (311)
T 3nf1_A          104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY  183 (311)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence             2 2334678888999999999999999999988764      2222 3556888899999999999999999998764 


Q ss_pred             -----CCCC-ChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          175 -----GCFP-DSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       175 -----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                           +..| ...++..+..++...|++++|.++++++
T Consensus       184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  221 (311)
T 3nf1_A          184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI  221 (311)
T ss_dssp             HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                 2223 3457888999999999999999999875

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.41  E-value=2e-11  Score=97.98  Aligned_cols=160  Identities=13%  Similarity=-0.043  Sum_probs=139.5

Q ss_pred             chhhhHHHHHhhhhhhhHHHHH-----HcCCCc-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhh
Q 045498           11 NFHVYGIRINGMCKIREIDSAI-----KKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD   84 (207)
Q Consensus        11 ~~~~~~~ll~~~~~~g~~~~a~-----~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~   84 (207)
                      +...|+.+-..|.+.|++++|+     .....| +..+|..+-.+|.+.|++++|+..|++..+.. +-+...|..+-.+
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~   86 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT   86 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            3578999999999999999999     222334 57889999999999999999999999998875 4457789999999


Q ss_pred             HhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 045498           85 NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA  164 (207)
Q Consensus        85 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a  164 (207)
                      +...|++++|.+.|++..+... -+...++.+..+|.+.|++++|.+.|++..+.... +...+..+...+...|++++|
T Consensus        87 l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A  164 (723)
T 4gyw_A           87 LKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY  164 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence            9999999999999999888753 36789999999999999999999999999987543 678899999999999999999


Q ss_pred             HHHHHHHHH
Q 045498          165 DKLLVQMKE  173 (207)
Q Consensus       165 ~~~~~~m~~  173 (207)
                      .+.+++..+
T Consensus       165 ~~~~~kal~  173 (723)
T 4gyw_A          165 DERMKKLVS  173 (723)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999888764

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.40  E-value=4.2e-11  Score=75.35  Aligned_cols=127  Identities=14%  Similarity=0.120  Sum_probs=110.5

Q ss_pred             hHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 045498           77 TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC  156 (207)
Q Consensus        77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~  156 (207)
                      .+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.+.. +...+..+...+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence            46778888999999999999999988765 336778888999999999999999999999887533 6778889999999


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       157 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      ..|++++|...++++.+.. +.+..++..+...+...|++++|.++++++
T Consensus        81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  129 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKA  129 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            9999999999999998863 346788899999999999999999999875

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.37  E-value=1.5e-10  Score=81.88  Aligned_cols=167  Identities=6%  Similarity=-0.062  Sum_probs=131.0

Q ss_pred             ccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc---hhhHHHHHhhHhhhcChhhHHHHHHHHHhCCC--CccHHH
Q 045498           38 LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAE---LVTYNPLIHDNWEKQGRFSAMALLQTLERDKY--ELNIEV  112 (207)
Q Consensus        38 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~  112 (207)
                      .++..+-.+...+.+.|++++|+..|+++.+.. +.+   ...+..+..++...|++++|...|++..+...  +.....
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a   91 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA   91 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence            456677778888899999999999999998864 223   56778888899999999999999999887642  123566


Q ss_pred             HHHHHHHHhc--------CCCHHHHHHHHHHHHhCCCCCChhhH-----------------HHHHHHHHhcCCHHHHHHH
Q 045498          113 YSLVIDGLCR--------VGRWEEARKKLDQLSEKGLVPGVVTY-----------------NILINGLCKKGMIMEADKL  167 (207)
Q Consensus       113 ~~~li~~~~~--------~~~~~~a~~~~~~~~~~g~~~~~~~~-----------------~~li~~~~~~~~~~~a~~~  167 (207)
                      +..+..++.+        .|++++|...|++..+.... +....                 ..+...|.+.|++++|...
T Consensus        92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  170 (261)
T 3qky_A           92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT  170 (261)
T ss_dssp             HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence            7778888888        99999999999999887432 22333                 4567888999999999999


Q ss_pred             HHHHHHcCCCC--ChhhHHHHHHHHHhc----------CchhHHHHHHHhh
Q 045498          168 LVQMKEKGCFP--DSTSFNTVIQGFLVK----------NETDRASSFLKKN  206 (207)
Q Consensus       168 ~~~m~~~~~~p--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~m  206 (207)
                      |+.+.+.....  ....+..+..+|...          |++++|...+++.
T Consensus       171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~  221 (261)
T 3qky_A          171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERL  221 (261)
T ss_dssp             HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHH
Confidence            99998763211  345778888888866          8899999998875

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.37  E-value=5.2e-10  Score=77.39  Aligned_cols=148  Identities=13%  Similarity=-0.005  Sum_probs=122.4

Q ss_pred             cchhhhHHHHHhhhhhhhHHHHH-------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHH
Q 045498           10 GNFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLI   82 (207)
Q Consensus        10 p~~~~~~~ll~~~~~~g~~~~a~-------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll   82 (207)
                      .|+..+......+...|++++|+       ....+++...+..+..++.+.|++++|+..|++..+.. +.+..++..+.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~   83 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS   83 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence            45678888889999999999998       33333677788889999999999999999999999875 44667899999


Q ss_pred             hhHhhhcChhhHHHHHHHHHhCCCCccH-------HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC---hhhHHHHH
Q 045498           83 HDNWEKQGRFSAMALLQTLERDKYELNI-------EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG---VVTYNILI  152 (207)
Q Consensus        83 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li  152 (207)
                      .++...|++++|...+++..+.... +.       ..|..+-..+.+.|++++|.+.+++..+.  .|+   ...+..+.
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~  160 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG  160 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence            9999999999999999998876532 34       56788888899999999999999999886  454   56777888


Q ss_pred             HHHHhcCCH
Q 045498          153 NGLCKKGMI  161 (207)
Q Consensus       153 ~~~~~~~~~  161 (207)
                      ..|...|+.
T Consensus       161 ~~~~~~~~~  169 (228)
T 4i17_A          161 VLFYNNGAD  169 (228)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888777766

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.35  E-value=3.6e-10  Score=81.95  Aligned_cols=167  Identities=10%  Similarity=-0.023  Sum_probs=132.4

Q ss_pred             CccHHhHHHHHHHHH-------hcCCh-------hHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHH
Q 045498           37 CLDVFVYSSLINGLC-------TFNRL-------KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE  102 (207)
Q Consensus        37 ~~~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~  102 (207)
                      +.++..|..+...+.       +.|++       ++|..+|++..+.-.+-+...|..+...+...|++++|..+|++..
T Consensus        47 p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  126 (308)
T 2ond_A           47 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL  126 (308)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            446677877777765       35886       8999999999884223455689999999999999999999999998


Q ss_pred             hCCCCccHH-HHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCh
Q 045498          103 RDKYELNIE-VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC-KKGMIMEADKLLVQMKEKGCFPDS  180 (207)
Q Consensus       103 ~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~~~~p~~  180 (207)
                      +.... +.. +|..+...+.+.|++++|..+|++..+... ++...|........ ..|++++|..+|+...+.. +-+.
T Consensus       127 ~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~  203 (308)
T 2ond_A          127 AIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIP  203 (308)
T ss_dssp             TSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCH
T ss_pred             hcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcH
Confidence            85422 333 899999999999999999999999998753 24555554443322 3699999999999998762 3367


Q ss_pred             hhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          181 TSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       181 ~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      ..|..++..+.+.|++++|..+|++.
T Consensus       204 ~~~~~~~~~~~~~g~~~~A~~~~~~a  229 (308)
T 2ond_A          204 EYVLAYIDYLSHLNEDNNTRVLFERV  229 (308)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            88999999999999999999999875

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.34  E-value=1.7e-10  Score=83.14  Aligned_cols=192  Identities=10%  Similarity=-0.055  Sum_probs=141.1

Q ss_pred             hhhHHHHHhhhhhhhHHHHH-----------HcCCCcc-HHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCc-ch
Q 045498           13 HVYGIRINGMCKIREIDSAI-----------KKGICLD-VFVYSSLINGLCTFNRLKEAVELFDKMVAQ----GITA-EL   75 (207)
Q Consensus        13 ~~~~~ll~~~~~~g~~~~a~-----------~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~   75 (207)
                      ..|......|...|++++|.           ..+.+++ ..+|+.+..+|.+.|++++|+..|++..+.    |-.. -.
T Consensus        38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a  117 (292)
T 1qqe_A           38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA  117 (292)
T ss_dssp             HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            36777778888889988888           2233332 578999999999999999999999988653    2111 13


Q ss_pred             hhHHHHHhhHhhh-cChhhHHHHHHHHHhCCCC----c-cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCh----
Q 045498           76 VTYNPLIHDNWEK-QGRFSAMALLQTLERDKYE----L-NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV----  145 (207)
Q Consensus        76 ~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~----~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~----  145 (207)
                      .+++.+-.++... |++++|...|++..+....    + ...++..+...+.+.|++++|...+++..+.......    
T Consensus       118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  197 (292)
T 1qqe_A          118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS  197 (292)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence            4788888889986 9999999999987654211    1 1356888899999999999999999999886543222    


Q ss_pred             --hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh------hhHHHHHHHHH--hcCchhHHHHHHHhh
Q 045498          146 --VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS------TSFNTVIQGFL--VKNETDRASSFLKKN  206 (207)
Q Consensus       146 --~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~l~~~~~--~~~~~~~a~~~~~~m  206 (207)
                        ..|..+..++...|++++|...|++..+.  .|+.      ..+..+..++.  ..+++++|.+.|+++
T Consensus       198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~  266 (292)
T 1qqe_A          198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF  266 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence              15677888899999999999999988754  2321      23455666664  457788998888764

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.32  E-value=1.3e-09  Score=84.76  Aligned_cols=192  Identities=9%  Similarity=0.020  Sum_probs=146.5

Q ss_pred             chhhhHHHHHhhhh-------hhhHH-------HHH---HcC---CCc-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 045498           11 NFHVYGIRINGMCK-------IREID-------SAI---KKG---ICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQ   69 (207)
Q Consensus        11 ~~~~~~~ll~~~~~-------~g~~~-------~a~---~~~---~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~   69 (207)
                      ++..|..+...+.+       .|+++       +|.   +.+   ..| +...|..+...+.+.|++++|..+|++..+.
T Consensus       271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~  350 (530)
T 2ooe_A          271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI  350 (530)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence            34566666666664       57776       555   222   334 5788999999999999999999999999985


Q ss_pred             CCCcc-h-hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHH-HHhcCCCHHHHHHHHHHHHhCCCCCChh
Q 045498           70 GITAE-L-VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID-GLCRVGRWEEARKKLDQLSEKGLVPGVV  146 (207)
Q Consensus        70 ~~~~~-~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~  146 (207)
                        .|+ . ..|..+...+.+.|+.++|..+|++..+... .+...|..... .+...|+.++|..+|+...+... -+..
T Consensus       351 --~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p-~~~~  426 (530)
T 2ooe_A          351 --EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPE  426 (530)
T ss_dssp             --SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT-TCHH
T ss_pred             --cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC-CCHH
Confidence              443 2 4788888888999999999999999887632 23333332222 23468999999999999887643 2678


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC--hhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          147 TYNILINGLCKKGMIMEADKLLVQMKEKGC-FPD--STSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       147 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      .|..++..+.+.|+.++|..+|++....+. .|+  ...|...+......|+.+.+..+.+++
T Consensus       427 ~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~  489 (530)
T 2ooe_A          427 YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  489 (530)
T ss_dssp             HHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            899999999999999999999999988632 232  347888888888899999999988765

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.31  E-value=2.1e-10  Score=78.56  Aligned_cols=130  Identities=8%  Similarity=-0.017  Sum_probs=61.6

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC
Q 045498           46 LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR  125 (207)
Q Consensus        46 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~  125 (207)
                      +..++.+.|++++|+..|++..+.. |-+...+..+-.++...|++++|...|++..+... -+...+..+..+|...|+
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~  137 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTAE  137 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhH
Confidence            5555555666666666666555543 33445555555555666666666666665555432 244455555555443332


Q ss_pred             --HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 045498          126 --WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST  181 (207)
Q Consensus       126 --~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~  181 (207)
                        .+.+...++....  ..|....+...-.++...|++++|...|++..+.  .|+..
T Consensus       138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~  191 (208)
T 3urz_A          138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTE  191 (208)
T ss_dssp             HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHH
T ss_pred             HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHH
Confidence              2233333333321  1111222223333444455566666666655543  34443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.29  E-value=1.4e-10  Score=86.55  Aligned_cols=192  Identities=10%  Similarity=-0.002  Sum_probs=144.9

Q ss_pred             hhhhHHHHHhhhhhhhHHHHH-----------HcC--CCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCc-
Q 045498           12 FHVYGIRINGMCKIREIDSAI-----------KKG--ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ----GITA-   73 (207)
Q Consensus        12 ~~~~~~ll~~~~~~g~~~~a~-----------~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-   73 (207)
                      ..+|..+...|...|++++|.           ..+  ......+++.+-..|...|++++|+..|++..+.    +-.+ 
T Consensus       143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  222 (383)
T 3ulq_A          143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL  222 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHH
Confidence            467888889999999999988           111  1223467888999999999999999999988653    2111 


Q ss_pred             chhhHHHHHhhHhhhcChhhHHHHHHHHHhC----CC-CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCCCC
Q 045498           74 ELVTYNPLIHDNWEKQGRFSAMALLQTLERD----KY-ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK----GLVPG  144 (207)
Q Consensus        74 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~~~  144 (207)
                      ...++..+-.++...|++++|...+++..+.    +. +....++..+...+.+.|++++|.+.+++..+.    +-+..
T Consensus       223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  302 (383)
T 3ulq_A          223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY  302 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            1247888889999999999999999988762    23 335678889999999999999999999887654    11112


Q ss_pred             hhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          145 VVTYNILINGLCKKGM---IMEADKLLVQMKEKGCFP-DSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       145 ~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      ...+..+...+...|+   +++|..+++..   +..| ....+..+...|...|++++|.+++++.
T Consensus       303 ~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a  365 (383)
T 3ulq_A          303 LSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKV  365 (383)
T ss_dssp             HHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3345677788888898   66666666654   3333 3356778999999999999999999875

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.27  E-value=7.3e-11  Score=78.60  Aligned_cols=161  Identities=14%  Similarity=-0.011  Sum_probs=112.6

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHH-H
Q 045498           42 VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG-L  120 (207)
Q Consensus        42 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~  120 (207)
                      .+..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+...  +...+...... +
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~   84 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLEL   84 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHH
Confidence            34556667778888888888888876653 34566778888888888888888888888765532  33332222111 1


Q ss_pred             hcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCchhHH
Q 045498          121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP-DSTSFNTVIQGFLVKNETDRA  199 (207)
Q Consensus       121 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a  199 (207)
                      ...++...|...+++..+.... +...+..+...+...|++++|...|++..+....+ +...+..+...+...|+.++|
T Consensus        85 ~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A  163 (176)
T 2r5s_A           85 HQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI  163 (176)
T ss_dssp             HHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred             HhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence            2222233467778877776433 57788888888889999999999998888764322 345788888888889999888


Q ss_pred             HHHHHhh
Q 045498          200 SSFLKKN  206 (207)
Q Consensus       200 ~~~~~~m  206 (207)
                      ...|++.
T Consensus       164 ~~~y~~a  170 (176)
T 2r5s_A          164 ASKYRRQ  170 (176)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8888764

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.27  E-value=3.6e-10  Score=81.24  Aligned_cols=170  Identities=13%  Similarity=-0.019  Sum_probs=136.8

Q ss_pred             HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHH
Q 045498           33 KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEV  112 (207)
Q Consensus        33 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~  112 (207)
                      ....+.+...+..+...+.+.|++++|...|++..+.. +-+...+..+...+...|++++|...+++.....  |+...
T Consensus       110 ~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~  186 (287)
T 3qou_A          110 DXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRY  186 (287)
T ss_dssp             HHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHH
T ss_pred             HHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHH
Confidence            33345566777888888999999999999999998875 4566788899999999999999999999887664  34333


Q ss_pred             H-HHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHH
Q 045498          113 Y-SLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF-PDSTSFNTVIQGF  190 (207)
Q Consensus       113 ~-~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~  190 (207)
                      . ......+.+.++.+.|.+.+++....... +...+..+...+...|++++|...|.++.+.... .+...+..+...+
T Consensus       187 ~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~  265 (287)
T 3qou_A          187 QGLVAQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEIL  265 (287)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence            2 23333466777888899999998887543 6888999999999999999999999999987422 1267899999999


Q ss_pred             HhcCchhHHHHHHHhh
Q 045498          191 LVKNETDRASSFLKKN  206 (207)
Q Consensus       191 ~~~~~~~~a~~~~~~m  206 (207)
                      ...|+.++|...+++.
T Consensus       266 ~~~g~~~~a~~~~r~a  281 (287)
T 3qou_A          266 AALGTGDALASXYRRQ  281 (287)
T ss_dssp             HHHCTTCHHHHHHHHH
T ss_pred             HHcCCCCcHHHHHHHH
Confidence            9999999999888764

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.27  E-value=6e-10  Score=80.23  Aligned_cols=165  Identities=12%  Similarity=-0.052  Sum_probs=128.0

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCcc-hhhHHHHHhhHhhhcChhhHHHHHHHHHhCCC---Cc--cHH
Q 045498           42 VYSSLINGLCTFNRLKEAVELFDKMVAQ----GITAE-LVTYNPLIHDNWEKQGRFSAMALLQTLERDKY---EL--NIE  111 (207)
Q Consensus        42 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---~~--~~~  111 (207)
                      .|......|...|++++|...|.+....    |-+++ ..+|+.+-.++...|++++|...+++..+...   .+  ...
T Consensus        39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~  118 (292)
T 1qqe_A           39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN  118 (292)
T ss_dssp             HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            4556677888999999999999988653    32222 46889999999999999999999988765421   11  145


Q ss_pred             HHHHHHHHHhcC-CCHHHHHHHHHHHHhCCCCC-C----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-----
Q 045498          112 VYSLVIDGLCRV-GRWEEARKKLDQLSEKGLVP-G----VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS-----  180 (207)
Q Consensus       112 ~~~~li~~~~~~-~~~~~a~~~~~~~~~~g~~~-~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----  180 (207)
                      +++.+...|... |++++|...+++..+..... +    ..++..+...+.+.|++++|...|++..+.......     
T Consensus       119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  198 (292)
T 1qqe_A          119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL  198 (292)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence            788889999996 99999999999887642110 1    356888999999999999999999999886432222     


Q ss_pred             -hhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          181 -TSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       181 -~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                       .++..+..++...|++++|...+++.
T Consensus       199 ~~~~~~lg~~~~~~g~~~~A~~~~~~a  225 (292)
T 1qqe_A          199 KDYFLKKGLCQLAATDAVAAARTLQEG  225 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence             15677888999999999999999875

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.26  E-value=3.7e-10  Score=88.62  Aligned_cols=134  Identities=13%  Similarity=0.021  Sum_probs=103.4

Q ss_pred             cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHH
Q 045498           39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID  118 (207)
Q Consensus        39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  118 (207)
                      +...|..+...+.+.|++++|.+.|++..+.. +.+...+..+-.++...|++++|...+++..+.. +.+...+..+..
T Consensus        22 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~   99 (568)
T 2vsy_A           22 DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGH   99 (568)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence            46677788888888888888888888887764 4456677778888888888888888888877764 335677788888


Q ss_pred             HHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHcC
Q 045498          119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK---GMIMEADKLLVQMKEKG  175 (207)
Q Consensus       119 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~~  175 (207)
                      ++.+.|++++|.+.+++..+.... +...+..+...+...   |++++|...+++..+.+
T Consensus       100 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~  158 (568)
T 2vsy_A          100 ALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG  158 (568)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence            888888888888888887776433 566777788888888   88888888888887763

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.26  E-value=2.6e-09  Score=73.88  Aligned_cols=165  Identities=10%  Similarity=-0.041  Sum_probs=110.2

Q ss_pred             cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-c-chhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCc-c-HHHHH
Q 045498           39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGIT-A-ELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL-N-IEVYS  114 (207)
Q Consensus        39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~-~~~~~  114 (207)
                      ++..+..+...+.+.|++++|+..|+++.+.... | ....+..+..++.+.|++++|...|++..+..... . ...+.
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            3445555666777788888888888888765311 1 12456667777888888888888888877654321 1 12333


Q ss_pred             HHHHHHh------------------cCCCHHHHHHHHHHHHhCCCCCChhhH-----------------HHHHHHHHhcC
Q 045498          115 LVIDGLC------------------RVGRWEEARKKLDQLSEKGLVPGVVTY-----------------NILINGLCKKG  159 (207)
Q Consensus       115 ~li~~~~------------------~~~~~~~a~~~~~~~~~~g~~~~~~~~-----------------~~li~~~~~~~  159 (207)
                      .+..++.                  ..|++++|...|+++.+..+. +...+                 ..+...|.+.|
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~  161 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFLKDRLAKYEYSVAEYYTERG  161 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            3333333                  357788888888888876322 22222                 23456778889


Q ss_pred             CHHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          160 MIMEADKLLVQMKEKGCFPD----STSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       160 ~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      ++++|...|+.+.+.  .|+    ..++..+..++.+.|++++|.+.++.+
T Consensus       162 ~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l  210 (225)
T 2yhc_A          162 AWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKII  210 (225)
T ss_dssp             CHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            999999999998876  233    256788888999999999999888754

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.25  E-value=1e-10  Score=87.84  Aligned_cols=194  Identities=12%  Similarity=0.015  Sum_probs=143.7

Q ss_pred             hhhHHHHHhhhhhhhHHHHH-----------HcC-CCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhC----C-CCcch
Q 045498           13 HVYGIRINGMCKIREIDSAI-----------KKG-ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ----G-ITAEL   75 (207)
Q Consensus        13 ~~~~~ll~~~~~~g~~~~a~-----------~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~-~~~~~   75 (207)
                      .+|..+...|...|++++|.           ..+ ......++..+...+...|++++|...+++..+.    + .+...
T Consensus        87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  166 (411)
T 4a1s_A           87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEG  166 (411)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHH
Confidence            46788888888999999888           112 1334567888888999999999999999987653    1 12234


Q ss_pred             hhHHHHHhhHhhhcC-----------------hhhHHHHHHHHHhC----CC-CccHHHHHHHHHHHhcCCCHHHHHHHH
Q 045498           76 VTYNPLIHDNWEKQG-----------------RFSAMALLQTLERD----KY-ELNIEVYSLVIDGLCRVGRWEEARKKL  133 (207)
Q Consensus        76 ~~~~~ll~~~~~~~~-----------------~~~a~~~~~~m~~~----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~  133 (207)
                      .++..+...+...|+                 +++|...+++..+.    +. ......+..+...+...|++++|.+.+
T Consensus       167 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  246 (411)
T 4a1s_A          167 RALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHH  246 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            577888888999999                 88988888876442    11 123457778888899999999999999


Q ss_pred             HHHHhCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C---CChhhHHHHHHHHHhcCchhHHHHHH
Q 045498          134 DQLSEKGLV-PG----VVTYNILINGLCKKGMIMEADKLLVQMKEKGC--F---PDSTSFNTVIQGFLVKNETDRASSFL  203 (207)
Q Consensus       134 ~~~~~~g~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~---p~~~~~~~l~~~~~~~~~~~~a~~~~  203 (207)
                      ++..+.... ++    ...+..+...|...|++++|...+++..+...  .   ....++..+...+...|++++|.+++
T Consensus       247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  326 (411)
T 4a1s_A          247 QERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYH  326 (411)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            887654111 11    23778888999999999999999988765411  0   12467888888999999999999988


Q ss_pred             Hhh
Q 045498          204 KKN  206 (207)
Q Consensus       204 ~~m  206 (207)
                      ++.
T Consensus       327 ~~a  329 (411)
T 4a1s_A          327 NRH  329 (411)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.25  E-value=2.4e-10  Score=80.99  Aligned_cols=164  Identities=10%  Similarity=-0.060  Sum_probs=130.5

Q ss_pred             chhhhHHHHHhhhhhhhHHHHH-------H-------cCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhC------C
Q 045498           11 NFHVYGIRINGMCKIREIDSAI-------K-------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ------G   70 (207)
Q Consensus        11 ~~~~~~~ll~~~~~~g~~~~a~-------~-------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~   70 (207)
                      ...++..+...|...|++++|+       .       ...+....++..+...+...|++++|...|++..+.      .
T Consensus        42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  121 (283)
T 3edt_B           42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK  121 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence            4567888999999999999998       1       112335678999999999999999999999998754      1


Q ss_pred             -CCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhC------C-CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC---
Q 045498           71 -ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERD------K-YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK---  139 (207)
Q Consensus        71 -~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---  139 (207)
                       .+....++..+...+...|++++|...+++..+.      + .+....++..+...+.+.|++++|.+.+++..+.   
T Consensus       122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~  201 (283)
T 3edt_B          122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE  201 (283)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence             1334567888999999999999999999998765      1 1224568888999999999999999999887753   


Q ss_pred             ---------------------------------------------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498          140 ---------------------------------------------GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK  174 (207)
Q Consensus       140 ---------------------------------------------g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  174 (207)
                                                                   .......++..+...|...|++++|..++++..+.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                                                         11122446788899999999999999999987653

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.23  E-value=6.7e-10  Score=82.76  Aligned_cols=191  Identities=9%  Similarity=0.024  Sum_probs=143.6

Q ss_pred             hhhhHHHHHhhhhhhhHHHHH----------Hc-CC-Cc-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCc-
Q 045498           12 FHVYGIRINGMCKIREIDSAI----------KK-GI-CL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQ----GITA-   73 (207)
Q Consensus        12 ~~~~~~ll~~~~~~g~~~~a~----------~~-~~-~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-   73 (207)
                      ..++..+...|...|+++.|.          .. +. .+ ...+++.+-..|...|++++|...|++..+.    +.++ 
T Consensus       141 a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~  220 (378)
T 3q15_A          141 AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF  220 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            457788888999999999888          11 11 22 3567888999999999999999999988653    2111 


Q ss_pred             chhhHHHHHhhHhhhcChhhHHHHHHHHHh-----CCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC----CCC
Q 045498           74 ELVTYNPLIHDNWEKQGRFSAMALLQTLER-----DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGL----VPG  144 (207)
Q Consensus        74 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~----~~~  144 (207)
                      ...++..+-.++...|++++|...+++..+     .. +....++..+...+.+.|++++|...+++..+...    +..
T Consensus       221 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  299 (378)
T 3q15_A          221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFY  299 (378)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            234678888899999999999999998876     33 33477888999999999999999999998876522    222


Q ss_pred             hhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          145 VVTYNILINGLCKKGM---IMEADKLLVQMKEKGCFP-DSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       145 ~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      ...+..+-..+...++   +.+|...++.   .+..| ....+..+...|...|++++|.+++++.
T Consensus       300 ~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a  362 (378)
T 3q15_A          300 KELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKV  362 (378)
T ss_dssp             HHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3455666677777788   6666666665   33323 3356778899999999999999999875

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.23  E-value=2.2e-09  Score=83.57  Aligned_cols=166  Identities=10%  Similarity=-0.015  Sum_probs=131.6

Q ss_pred             ccHHhHHHHHHHHHh-------cCChh-------HHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHh
Q 045498           38 LDVFVYSSLINGLCT-------FNRLK-------EAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLER  103 (207)
Q Consensus        38 ~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~  103 (207)
                      .++..|......+.+       .|+++       +|..+|++..+.-.+.+...|..+...+.+.|++++|..+|++..+
T Consensus       270 ~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~  349 (530)
T 2ooe_A          270 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA  349 (530)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC
Confidence            456778888887775       68887       8999999998632355678899999999999999999999999988


Q ss_pred             CCCCcc-HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCChh
Q 045498          104 DKYELN-IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING-LCKKGMIMEADKLLVQMKEKGCFPDST  181 (207)
Q Consensus       104 ~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~p~~~  181 (207)
                      .... + ...|......+.+.|++++|.++|++..+.... +...|...... +...|++++|..+|+...+.. +.+..
T Consensus       350 ~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~  426 (530)
T 2ooe_A          350 IEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPE  426 (530)
T ss_dssp             SSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHH
T ss_pred             cccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHH
Confidence            6422 3 358889999999999999999999999886322 33333332222 336899999999999988762 33678


Q ss_pred             hHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          182 SFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       182 ~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      .|..++..+.+.|+.++|..+|++.
T Consensus       427 ~~~~~~~~~~~~g~~~~Ar~~~~~a  451 (530)
T 2ooe_A          427 YVLAYIDYLSHLNEDNNTRVLFERV  451 (530)
T ss_dssp             HHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHhhHHHHHHHH
Confidence            8999999999999999999999875

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.22  E-value=1.4e-10  Score=86.59  Aligned_cols=195  Identities=14%  Similarity=0.041  Sum_probs=140.6

Q ss_pred             hhhhHHHHHhhhhhhhHHHHH-----------HcCC-CccHHhHHHHHHHHHhcCC--------------------hhHH
Q 045498           12 FHVYGIRINGMCKIREIDSAI-----------KKGI-CLDVFVYSSLINGLCTFNR--------------------LKEA   59 (207)
Q Consensus        12 ~~~~~~ll~~~~~~g~~~~a~-----------~~~~-~~~~~~~~~ll~~~~~~~~--------------------~~~a   59 (207)
                      ..++..+...|...|++++|.           ..+. .....++..+...+...|+                    +++|
T Consensus        87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A  166 (406)
T 3sf4_A           87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA  166 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence            446777778888888888888           1111 1124578888888888899                    8999


Q ss_pred             HHHHHHHHhC----CCCc-chhhHHHHHhhHhhhcChhhHHHHHHHHHhCC----CC-ccHHHHHHHHHHHhcCCCHHHH
Q 045498           60 VELFDKMVAQ----GITA-ELVTYNPLIHDNWEKQGRFSAMALLQTLERDK----YE-LNIEVYSLVIDGLCRVGRWEEA  129 (207)
Q Consensus        60 ~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----~~-~~~~~~~~li~~~~~~~~~~~a  129 (207)
                      ...+++..+.    +..| ...++..+...+...|++++|...+++..+..    .. ....++..+...+...|++++|
T Consensus       167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  246 (406)
T 3sf4_A          167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA  246 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence            8888876542    2112 23467778888889999999999988875431    11 1234778888889999999999


Q ss_pred             HHHHHHHHhCC----CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHhcCchhHH
Q 045498          130 RKKLDQLSEKG----LVP-GVVTYNILINGLCKKGMIMEADKLLVQMKEKGC-FPD----STSFNTVIQGFLVKNETDRA  199 (207)
Q Consensus       130 ~~~~~~~~~~g----~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a  199 (207)
                      ...+++..+..    ..+ ...++..+...|...|++++|...+++..+... .++    ..++..+...|...|++++|
T Consensus       247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  326 (406)
T 3sf4_A          247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA  326 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence            99998776431    111 145778888899999999999999988765311 111    45788888899999999999


Q ss_pred             HHHHHhh
Q 045498          200 SSFLKKN  206 (207)
Q Consensus       200 ~~~~~~m  206 (207)
                      .+++++.
T Consensus       327 ~~~~~~a  333 (406)
T 3sf4_A          327 MHFAEKH  333 (406)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988764

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.22  E-value=2.6e-09  Score=75.47  Aligned_cols=185  Identities=11%  Similarity=-0.077  Sum_probs=135.3

Q ss_pred             chhhhHHHHHhhhhhhhHHHHH-----HcCCCc-c---HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CcchhhHH
Q 045498           11 NFHVYGIRINGMCKIREIDSAI-----KKGICL-D---VFVYSSLINGLCTFNRLKEAVELFDKMVAQGI--TAELVTYN   79 (207)
Q Consensus        11 ~~~~~~~ll~~~~~~g~~~~a~-----~~~~~~-~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~   79 (207)
                      +...+-.....+.+.|++++|+     -....| +   ...+..+..++.+.|++++|+..|++..+...  +.....+.
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~   93 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY   93 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence            4456677778888999999999     112223 3   67788899999999999999999999988631  12245666


Q ss_pred             HHHhhHhh--------hcChhhHHHHHHHHHhCCCCccHHHH-----------------HHHHHHHhcCCCHHHHHHHHH
Q 045498           80 PLIHDNWE--------KQGRFSAMALLQTLERDKYELNIEVY-----------------SLVIDGLCRVGRWEEARKKLD  134 (207)
Q Consensus        80 ~ll~~~~~--------~~~~~~a~~~~~~m~~~~~~~~~~~~-----------------~~li~~~~~~~~~~~a~~~~~  134 (207)
                      .+..++..        .|++++|...|++..+.... +....                 ..+...|.+.|++++|...|+
T Consensus        94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  172 (261)
T 3qky_A           94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE  172 (261)
T ss_dssp             HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            77778888        99999999999998876432 22222                 556788999999999999999


Q ss_pred             HHHhCCCCC--ChhhHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCchhH
Q 045498          135 QLSEKGLVP--GVVTYNILINGLCKK----------GMIMEADKLLVQMKEKGCFPDS----TSFNTVIQGFLVKNETDR  198 (207)
Q Consensus       135 ~~~~~g~~~--~~~~~~~li~~~~~~----------~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~  198 (207)
                      ...+.....  ....+..+..+|...          |++++|...|+.+.+.  .|+.    .+...+-..+.+.+++++
T Consensus       173 ~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~l~~~~~~~~~~~~  250 (261)
T 3qky_A          173 AVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSPLLRTAEELYTRARQRLTELEG  250 (261)
T ss_dssp             HHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHHHHhhh
Confidence            998864321  245677788888766          8999999999999886  3443    344444445555554443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.21  E-value=4.2e-10  Score=84.40  Aligned_cols=196  Identities=13%  Similarity=0.013  Sum_probs=149.4

Q ss_pred             chhhhHHHHHhhhhhhhHHHHH-----------HcC-CCccHHhHHHHHHHHHhcCC-----------------hhHHHH
Q 045498           11 NFHVYGIRINGMCKIREIDSAI-----------KKG-ICLDVFVYSSLINGLCTFNR-----------------LKEAVE   61 (207)
Q Consensus        11 ~~~~~~~ll~~~~~~g~~~~a~-----------~~~-~~~~~~~~~~ll~~~~~~~~-----------------~~~a~~   61 (207)
                      ...++..+...|...|++++|.           ..+ ......++..+...+...|+                 +++|+.
T Consensus       125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~  204 (411)
T 4a1s_A          125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE  204 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence            3457788888999999999988           122 22235678888999999999                 999999


Q ss_pred             HHHHHHhC----CCCc-chhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCC-----ccHHHHHHHHHHHhcCCCHHHHHH
Q 045498           62 LFDKMVAQ----GITA-ELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYE-----LNIEVYSLVIDGLCRVGRWEEARK  131 (207)
Q Consensus        62 ~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~  131 (207)
                      .+++..+.    +..+ ...++..+...+...|++++|...+++..+....     .....+..+...|...|++++|.+
T Consensus       205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  284 (411)
T 4a1s_A          205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE  284 (411)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            99887542    2112 2347788888999999999999999987654211     113478888999999999999999


Q ss_pred             HHHHHHhCCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C-CCChhhHHHHHHHHHhcCchhHHHH
Q 045498          132 KLDQLSEKGLV-----PGVVTYNILINGLCKKGMIMEADKLLVQMKEKG----C-FPDSTSFNTVIQGFLVKNETDRASS  201 (207)
Q Consensus       132 ~~~~~~~~g~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~-~p~~~~~~~l~~~~~~~~~~~~a~~  201 (207)
                      .+++..+....     ....++..+...+...|++++|...+++..+..    . .....++..+...|...|++++|.+
T Consensus       285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  364 (411)
T 4a1s_A          285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALK  364 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            99887654211     124678888999999999999999999887541    1 1123578889999999999999999


Q ss_pred             HHHhh
Q 045498          202 FLKKN  206 (207)
Q Consensus       202 ~~~~m  206 (207)
                      ++++.
T Consensus       365 ~~~~a  369 (411)
T 4a1s_A          365 YAEQH  369 (411)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99875

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.20  E-value=2.9e-09  Score=76.62  Aligned_cols=164  Identities=11%  Similarity=0.004  Sum_probs=119.2

Q ss_pred             CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCc-----cH
Q 045498           37 CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGI-TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL-----NI  110 (207)
Q Consensus        37 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-----~~  110 (207)
                      .++..++..+..++...|++++|++++.+-...+. .-+...+..++..+.+.|+.+.|.+.+++|.+.  .|     +.
T Consensus        97 ~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d  174 (310)
T 3mv2_B           97 QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDN  174 (310)
T ss_dssp             CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Cccccccch
Confidence            45566666888889999999999999998876653 235677888889999999999999999999875  44     35


Q ss_pred             HHHHHHHHH--Hhc--CCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C----CC
Q 045498          111 EVYSLVIDG--LCR--VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK-----G----CF  177 (207)
Q Consensus       111 ~~~~~li~~--~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~----~~  177 (207)
                      .+...+..+  ...  .+++++|..+|+++.+.  .|+..+-..++.++.+.|++++|...++.+.+.     .    -+
T Consensus       175 ~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p  252 (310)
T 3mv2_B          175 EMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVL  252 (310)
T ss_dssp             HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHS
T ss_pred             HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCC
Confidence            555556555  232  33899999999998776  345444455555888999999999999876653     1    13


Q ss_pred             CChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          178 PDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       178 p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      -|+.++..+|......|+  +|.++++++
T Consensus       253 ~~~~~LaN~i~l~~~lgk--~a~~l~~qL  279 (310)
T 3mv2_B          253 YKPTFLANQITLALMQGL--DTEDLTNQL  279 (310)
T ss_dssp             SHHHHHHHHHHHHHHTTC--TTHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCh--HHHHHHHHH
Confidence            366677667666666675  667776654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.20  E-value=2.2e-10  Score=74.34  Aligned_cols=144  Identities=8%  Similarity=-0.120  Sum_probs=100.4

Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHH
Q 045498           48 NGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE  127 (207)
Q Consensus        48 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~  127 (207)
                      ..+...|++++|+..++...... +-+...+-.+-..|...|++++|...|++..+... -+...|..+..+|.+.|+++
T Consensus         5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A            5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchH
Confidence            34455677888888887775542 22344556677788888888888888888777653 36778888888888888888


Q ss_pred             HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH-HHHHHHcCCCCChhhHHHHHHHHHhcCc
Q 045498          128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKL-LVQMKEKGCFPDSTSFNTVIQGFLVKNE  195 (207)
Q Consensus       128 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~-~~~m~~~~~~p~~~~~~~l~~~~~~~~~  195 (207)
                      +|...|++..+.... +...+..+...|.+.|+++++.+. ++...+.. +-++.+|....+.+...|+
T Consensus        83 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           83 KAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence            888888888876543 567788888888888888765554 46666652 2355666666666666554

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.20  E-value=2.1e-10  Score=83.17  Aligned_cols=195  Identities=14%  Similarity=0.025  Sum_probs=136.9

Q ss_pred             hhhhHHHHHhhhhhhhHHHHH-----------HcCCC-ccHHhHHHHHHHHHhcCC--------------------hhHH
Q 045498           12 FHVYGIRINGMCKIREIDSAI-----------KKGIC-LDVFVYSSLINGLCTFNR--------------------LKEA   59 (207)
Q Consensus        12 ~~~~~~ll~~~~~~g~~~~a~-----------~~~~~-~~~~~~~~ll~~~~~~~~--------------------~~~a   59 (207)
                      ..++..+...+...|++++|.           ..+.. ....++..+...+...|+                    +++|
T Consensus        83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A  162 (338)
T 3ro2_A           83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA  162 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence            456677777888888888877           11111 123477778888888888                    8888


Q ss_pred             HHHHHHHHhC----CCCc-chhhHHHHHhhHhhhcChhhHHHHHHHHHhCCC-----CccHHHHHHHHHHHhcCCCHHHH
Q 045498           60 VELFDKMVAQ----GITA-ELVTYNPLIHDNWEKQGRFSAMALLQTLERDKY-----ELNIEVYSLVIDGLCRVGRWEEA  129 (207)
Q Consensus        60 ~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-----~~~~~~~~~li~~~~~~~~~~~a  129 (207)
                      ...+++....    +..+ ...++..+...+...|++++|...+++..+...     .....++..+...+...|++++|
T Consensus       163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  242 (338)
T 3ro2_A          163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA  242 (338)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence            8888776432    2111 234677777888888999999988888654311     11234777888888899999999


Q ss_pred             HHHHHHHHhCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CChhhHHHHHHHHHhcCchhHH
Q 045498          130 RKKLDQLSEKGLV-PG----VVTYNILINGLCKKGMIMEADKLLVQMKEK----GCF-PDSTSFNTVIQGFLVKNETDRA  199 (207)
Q Consensus       130 ~~~~~~~~~~g~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-p~~~~~~~l~~~~~~~~~~~~a  199 (207)
                      .+.+++..+.... .+    ..++..+...+...|++++|...+++..+.    +-. ....++..+...+.+.|++++|
T Consensus       243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  322 (338)
T 3ro2_A          243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA  322 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence            9988877643111 11    456778888889999999999999887653    111 1234677888899999999999


Q ss_pred             HHHHHhh
Q 045498          200 SSFLKKN  206 (207)
Q Consensus       200 ~~~~~~m  206 (207)
                      .+++++.
T Consensus       323 ~~~~~~a  329 (338)
T 3ro2_A          323 MHFAEKH  329 (338)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998875

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.19  E-value=2.8e-10  Score=82.49  Aligned_cols=195  Identities=13%  Similarity=0.036  Sum_probs=146.9

Q ss_pred             hhhhHHHHHhhhhhhhHHHHH-----------HcCCC-ccHHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCc-c
Q 045498           12 FHVYGIRINGMCKIREIDSAI-----------KKGIC-LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ----GITA-E   74 (207)
Q Consensus        12 ~~~~~~ll~~~~~~g~~~~a~-----------~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~   74 (207)
                      ..++..+...+...|++++|.           ..+.. ....++..+...+...|++++|...+++..+.    +-++ .
T Consensus        43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  122 (338)
T 3ro2_A           43 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE  122 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHH
Confidence            357888889999999999988           12222 23667888999999999999999999987653    1111 1


Q ss_pred             hhhHHHHHhhHhhhcC--------------------hhhHHHHHHHHHhC----CCC-ccHHHHHHHHHHHhcCCCHHHH
Q 045498           75 LVTYNPLIHDNWEKQG--------------------RFSAMALLQTLERD----KYE-LNIEVYSLVIDGLCRVGRWEEA  129 (207)
Q Consensus        75 ~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~~~~~~a  129 (207)
                      ..++..+...+...|+                    +++|...+++..+.    +.. .....+..+...+...|++++|
T Consensus       123 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  202 (338)
T 3ro2_A          123 ARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA  202 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHH
Confidence            3377888889999999                    99999888876432    211 2245778888999999999999


Q ss_pred             HHHHHHHHhCCC----C-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHhcCchhHH
Q 045498          130 RKKLDQLSEKGL----V-PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC-FPD----STSFNTVIQGFLVKNETDRA  199 (207)
Q Consensus       130 ~~~~~~~~~~g~----~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a  199 (207)
                      .+.+++..+...    . ....++..+...+...|++++|...+++..+... .++    ..++..+...+...|++++|
T Consensus       203 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  282 (338)
T 3ro2_A          203 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA  282 (338)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHH
Confidence            999988765311    1 1133788888999999999999999998765311 111    46788889999999999999


Q ss_pred             HHHHHhh
Q 045498          200 SSFLKKN  206 (207)
Q Consensus       200 ~~~~~~m  206 (207)
                      .+++++.
T Consensus       283 ~~~~~~a  289 (338)
T 3ro2_A          283 IDYHLKH  289 (338)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998875

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.19  E-value=4.3e-10  Score=83.92  Aligned_cols=194  Identities=13%  Similarity=0.038  Sum_probs=147.2

Q ss_pred             hhhHHHHHhhhhhhhHHHHH-----------HcCCCc-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-cch
Q 045498           13 HVYGIRINGMCKIREIDSAI-----------KKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQ----GIT-AEL   75 (207)
Q Consensus        13 ~~~~~ll~~~~~~g~~~~a~-----------~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~   75 (207)
                      .++..+...+...|++++|.           ..+..| ...++..+...+...|++++|...+++..+.    +-+ ...
T Consensus        48 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  127 (406)
T 3sf4_A           48 AIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA  127 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchH
Confidence            57888889999999999988           122222 3567888899999999999999999988653    111 113


Q ss_pred             hhHHHHHhhHhhhcC--------------------hhhHHHHHHHHHhC----CCCc-cHHHHHHHHHHHhcCCCHHHHH
Q 045498           76 VTYNPLIHDNWEKQG--------------------RFSAMALLQTLERD----KYEL-NIEVYSLVIDGLCRVGRWEEAR  130 (207)
Q Consensus        76 ~~~~~ll~~~~~~~~--------------------~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~  130 (207)
                      .++..+...+...|+                    +++|...+++..+.    +..| ...++..+...+...|++++|.
T Consensus       128 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  207 (406)
T 3sf4_A          128 RALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAV  207 (406)
T ss_dssp             HHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHH
T ss_pred             HHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHH
Confidence            478888889999999                    99999988876433    2122 2457888889999999999999


Q ss_pred             HHHHHHHhCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-ChhhHHHHHHHHHhcCchhHHH
Q 045498          131 KKLDQLSEKGLV-PG----VVTYNILINGLCKKGMIMEADKLLVQMKEKG----CFP-DSTSFNTVIQGFLVKNETDRAS  200 (207)
Q Consensus       131 ~~~~~~~~~g~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~p-~~~~~~~l~~~~~~~~~~~~a~  200 (207)
                      +.+++..+.... ++    ..++..+...|...|++++|...+++..+..    ..+ ...++..+...+...|++++|.
T Consensus       208 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  287 (406)
T 3sf4_A          208 IAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI  287 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHH
Confidence            999887654111 11    3378888999999999999999999887531    111 1467888999999999999999


Q ss_pred             HHHHhh
Q 045498          201 SFLKKN  206 (207)
Q Consensus       201 ~~~~~m  206 (207)
                      +++++.
T Consensus       288 ~~~~~a  293 (406)
T 3sf4_A          288 DYHLKH  293 (406)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998864

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.17  E-value=7.3e-10  Score=88.81  Aligned_cols=177  Identities=10%  Similarity=-0.056  Sum_probs=129.6

Q ss_pred             hhhhhHHHHH---H-----------cCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhh
Q 045498           23 CKIREIDSAI---K-----------KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK   88 (207)
Q Consensus        23 ~~~g~~~~a~---~-----------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~   88 (207)
                      ...|++++|+   +           ...+.+...+..+..++.+.|++++|+..|++..+.+ +.+...|..+-.++...
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~  480 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT  480 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence            5677777776   1           2224456778888888888899999999888888764 44567788888888888


Q ss_pred             cChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 045498           89 QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLL  168 (207)
Q Consensus        89 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~  168 (207)
                      |++++|...|++..+.... +...+..+..++.+.|++++ .+.|++..+.... +...|..+..++.+.|++++|...|
T Consensus       481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~  557 (681)
T 2pzi_A          481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTL  557 (681)
T ss_dssp             TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999988888776532 56777888888888888888 8888888876543 5678888888888899999998888


Q ss_pred             HHHHHcCCCCC-hhhHHHHHHHHHhcC--------chhHHHHHHHh
Q 045498          169 VQMKEKGCFPD-STSFNTVIQGFLVKN--------ETDRASSFLKK  205 (207)
Q Consensus       169 ~~m~~~~~~p~-~~~~~~l~~~~~~~~--------~~~~a~~~~~~  205 (207)
                      ++..+.  .|+ ..++..+..++...+        ++++|.+.+..
T Consensus       558 ~~al~l--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~  601 (681)
T 2pzi_A          558 DEVPPT--SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEA  601 (681)
T ss_dssp             HTSCTT--STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHT
T ss_pred             Hhhccc--CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhh
Confidence            877664  343 456666777765533        35566655543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.16  E-value=1e-09  Score=88.01  Aligned_cols=152  Identities=8%  Similarity=-0.066  Sum_probs=131.8

Q ss_pred             HhcCChhHHHHHHHHHH--------hCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhc
Q 045498           51 CTFNRLKEAVELFDKMV--------AQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR  122 (207)
Q Consensus        51 ~~~~~~~~a~~~~~~m~--------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  122 (207)
                      ...|++++|++.+++..        +.. +.+...+..+..++...|++++|...+++..+.. +-+...+..+..++.+
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence            67899999999999998        432 4466788888899999999999999999998875 3367889999999999


Q ss_pred             CCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHH
Q 045498          123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF  202 (207)
Q Consensus       123 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~  202 (207)
                      .|++++|.+.|++..+.... +...+..+..++.+.|++++ ...|++..+.+ +-+...+..+..++.+.|++++|.+.
T Consensus       480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999999999987543 67889999999999999999 99999998863 33678899999999999999999999


Q ss_pred             HHhhC
Q 045498          203 LKKNM  207 (207)
Q Consensus       203 ~~~m~  207 (207)
                      +++.+
T Consensus       557 ~~~al  561 (681)
T 2pzi_A          557 LDEVP  561 (681)
T ss_dssp             HHTSC
T ss_pred             HHhhc
Confidence            98753

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.16  E-value=5.7e-09  Score=75.08  Aligned_cols=197  Identities=10%  Similarity=-0.034  Sum_probs=137.3

Q ss_pred             cccchhhhHHHHHhhhhhhhHHHHHHcCCCccHHh---HHHHHHHHHhcCChhHHHHHHHHHHhCC-CCcch----hhHH
Q 045498            8 FKGNFHVYGIRINGMCKIREIDSAIKKGICLDVFV---YSSLINGLCTFNRLKEAVELFDKMVAQG-ITAEL----VTYN   79 (207)
Q Consensus         8 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~----~~~~   79 (207)
                      ..|+..+...+...+.-.  ++.........+...   +...+..+...|++++|...+++..+.. ..|+.    ..+.
T Consensus        42 ~~~~~~~l~~i~~~l~~~--~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~  119 (293)
T 3u3w_A           42 VYPSMDILQGIAAKLQIP--IIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQY  119 (293)
T ss_dssp             CCCCHHHHHHHHHHHTCC--THHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhCcC--HHHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHH
Confidence            356666666665554321  222222222222333   3344677889999999999999988743 22332    1333


Q ss_pred             HHHhhHhhhcChhhHHHHHHHHHhCCCC-cc----HHHHHHHHHHHhcCCCHHHHHHHHHHHHh----C-CCCCC-hhhH
Q 045498           80 PLIHDNWEKQGRFSAMALLQTLERDKYE-LN----IEVYSLVIDGLCRVGRWEEARKKLDQLSE----K-GLVPG-VVTY  148 (207)
Q Consensus        80 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~-g~~~~-~~~~  148 (207)
                      .+...+...+++++|...+++..+.... ++    ..+++.+...|...|++++|...+++..+    . +..+. ..++
T Consensus       120 ~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  199 (293)
T 3u3w_A          120 YVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVR  199 (293)
T ss_dssp             HHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred             HHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHH
Confidence            4666677778999999999998874322 22    34789999999999999999999998874    1 11222 3478


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHHhcCc-hhHHHHHHHhh
Q 045498          149 NILINGLCKKGMIMEADKLLVQMKEK----GCFPD-STSFNTVIQGFLVKNE-TDRASSFLKKN  206 (207)
Q Consensus       149 ~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~-~~~a~~~~~~m  206 (207)
                      ..+...|.+.|++++|...+++..+.    +..+. ..+|..+..++.+.|+ +++|.+.+++.
T Consensus       200 ~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A  263 (293)
T 3u3w_A          200 YNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence            89999999999999999999987653    22222 5788999999999994 69999998875

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.15  E-value=5.3e-09  Score=77.96  Aligned_cols=188  Identities=12%  Similarity=-0.022  Sum_probs=139.8

Q ss_pred             HHHhhhhhhhHHHHH---H--------cCCCc-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhC--CC----CcchhhHH
Q 045498           18 RINGMCKIREIDSAI---K--------KGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQ--GI----TAELVTYN   79 (207)
Q Consensus        18 ll~~~~~~g~~~~a~---~--------~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~----~~~~~~~~   79 (207)
                      ....+...|++++|.   .        .+..+ ...++..+...+...|++++|+..+++..+.  ..    +....+++
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            344566789999988   1        11122 3577889999999999999999999988653  11    11235778


Q ss_pred             HHHhhHhhhcChhhHHHHHHHHHhCC----CC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CC-CCChhhHH
Q 045498           80 PLIHDNWEKQGRFSAMALLQTLERDK----YE-LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK----GL-VPGVVTYN  149 (207)
Q Consensus        80 ~ll~~~~~~~~~~~a~~~~~~m~~~~----~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~-~~~~~~~~  149 (207)
                      .+-.++...|++++|...+++..+..    .. ....++..+...|...|++++|.+.+++..+.    +. +....++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            88899999999999999998876441    11 12357888999999999999999999988762    22 33466788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHc----CCCCChhhHHHHHHHHHhcCc---hhHHHHHHHh
Q 045498          150 ILINGLCKKGMIMEADKLLVQMKEK----GCFPDSTSFNTVIQGFLVKNE---TDRASSFLKK  205 (207)
Q Consensus       150 ~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~  205 (207)
                      .+...|.+.|++++|...+++..+.    +-+.....+..+...+...|+   +++|..++++
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~  331 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLES  331 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            9999999999999999999987654    112222345677788888888   7888887765

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.15  E-value=1.2e-08  Score=69.54  Aligned_cols=88  Identities=9%  Similarity=-0.143  Sum_probs=39.7

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC
Q 045498           46 LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR  125 (207)
Q Consensus        46 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~  125 (207)
                      +...+...|++++|+..|++..    .|+..++..+..++...|++++|...+++..+.. +.+...+..+..++.+.|+
T Consensus        12 ~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~   86 (213)
T 1hh8_A           12 EGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK   86 (213)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence            3334444444444444444331    2334444444444444444444444444444332 1233444444444444555


Q ss_pred             HHHHHHHHHHHHh
Q 045498          126 WEEARKKLDQLSE  138 (207)
Q Consensus       126 ~~~a~~~~~~~~~  138 (207)
                      +++|.+.+++..+
T Consensus        87 ~~~A~~~~~~al~   99 (213)
T 1hh8_A           87 YDLAIKDLKEALI   99 (213)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            5555554444444

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.15  E-value=1.2e-08  Score=77.84  Aligned_cols=194  Identities=15%  Similarity=0.003  Sum_probs=136.8

Q ss_pred             cchhhhHHHHHhhhhhhhHHHHH---------------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhC----C
Q 045498           10 GNFHVYGIRINGMCKIREIDSAI---------------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ----G   70 (207)
Q Consensus        10 p~~~~~~~ll~~~~~~g~~~~a~---------------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~   70 (207)
                      .....||.+...+...|+.++|+               ....+....+|+.+..+|...|++++|...+++..+.    .
T Consensus        49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~  128 (472)
T 4g1t_A           49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS  128 (472)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence            33567999999999999999998               1122334678999999999999999999999987642    1


Q ss_pred             --CC-cchhhHHHHHhhHhh--hcChhhHHHHHHHHHhCCCCccHHHHHHHHHH---HhcCCCHHHHHHHHHHHHhCCCC
Q 045498           71 --IT-AELVTYNPLIHDNWE--KQGRFSAMALLQTLERDKYELNIEVYSLVIDG---LCRVGRWEEARKKLDQLSEKGLV  142 (207)
Q Consensus        71 --~~-~~~~~~~~ll~~~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~---~~~~~~~~~a~~~~~~~~~~g~~  142 (207)
                        .. ....++..+-.++..  .+++++|...|++..+.... +...+..+..+   +...++.++|.+.+++..+....
T Consensus       129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~  207 (472)
T 4g1t_A          129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD  207 (472)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred             cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence              01 123455555555544  35789999999998876532 44445444433   45667788899999888876433


Q ss_pred             CChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          143 PGVVTYNILINGLCK----KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       143 ~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                       +...+..+...+..    .+++++|.+++++..... +.+..++..+...|...|++++|.+.+++.
T Consensus       208 -~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  273 (472)
T 4g1t_A          208 -NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKA  273 (472)
T ss_dssp             -CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence             45556555555544    467788999999887763 446678889999999999999999998864

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.14  E-value=3.6e-08  Score=67.53  Aligned_cols=160  Identities=12%  Similarity=-0.062  Sum_probs=128.8

Q ss_pred             ccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhc----ChhhHHHHHHHHHhCCCCccHHHH
Q 045498           38 LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ----GRFSAMALLQTLERDKYELNIEVY  113 (207)
Q Consensus        38 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~m~~~~~~~~~~~~  113 (207)
                      -++..+..+-..|...+++++|+..|++..+.|   +...+..|-..|.. +    +.++|...|++..+.|   +...+
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~   88 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE   88 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence            366778888888889999999999999998876   45566667767776 6    8999999999988766   55677


Q ss_pred             HHHHHHHhc----CCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHH
Q 045498          114 SLVIDGLCR----VGRWEEARKKLDQLSEKGLV-PGVVTYNILINGLCK----KGMIMEADKLLVQMKEKGCFPDSTSFN  184 (207)
Q Consensus       114 ~~li~~~~~----~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~  184 (207)
                      ..+-..|..    .+++++|.+.|++..+.|.. .+...+..|-..|..    .+++++|...|++..+.  .++...+.
T Consensus        89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~  166 (212)
T 3rjv_A           89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEY  166 (212)
T ss_dssp             HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHH
T ss_pred             HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHH
Confidence            777778877    88999999999999988632 126788888888888    88999999999999876  33556778


Q ss_pred             HHHHHHHhc-C-----chhHHHHHHHhh
Q 045498          185 TVIQGFLVK-N-----ETDRASSFLKKN  206 (207)
Q Consensus       185 ~l~~~~~~~-~-----~~~~a~~~~~~m  206 (207)
                      .|...|... |     +.++|.+++++.
T Consensus       167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A  194 (212)
T 3rjv_A          167 WAGMMFQQGEKGFIEPNKQKALHWLNVS  194 (212)
T ss_dssp             HHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence            888888654 3     899999998864

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.13  E-value=1e-08  Score=73.68  Aligned_cols=167  Identities=10%  Similarity=-0.037  Sum_probs=124.3

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcch-----hhHHHHHhhHhhhcChhhHHHHHHHHHhCCC---Ccc--
Q 045498           40 VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL-----VTYNPLIHDNWEKQGRFSAMALLQTLERDKY---ELN--  109 (207)
Q Consensus        40 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---~~~--  109 (207)
                      ...+...+..+...|++++|.+.+.+..+.....+.     ..+..+...+...|++++|...+++..+...   .+.  
T Consensus        75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  154 (293)
T 2qfc_A           75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN  154 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence            344556778888999999999999988775322111     2233455566778899999999998775421   112  


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHh---C-CCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-
Q 045498          110 IEVYSLVIDGLCRVGRWEEARKKLDQLSE---K-GLVP--GVVTYNILINGLCKKGMIMEADKLLVQMKEKG----CFP-  178 (207)
Q Consensus       110 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~-g~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~p-  178 (207)
                      ..+++.+...|...|++++|...+++..+   . +-.+  ...++..+...|.+.|++++|...+++..+..    ... 
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~  234 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL  234 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence            45889999999999999999999998762   2 1111  12588899999999999999999999876531    111 


Q ss_pred             ChhhHHHHHHHHHhcCchhHH-HHHHHhh
Q 045498          179 DSTSFNTVIQGFLVKNETDRA-SSFLKKN  206 (207)
Q Consensus       179 ~~~~~~~l~~~~~~~~~~~~a-~~~~~~m  206 (207)
                      -..+|..+..+|.+.|++++| ...+++.
T Consensus       235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A  263 (293)
T 2qfc_A          235 IGQLYYQRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            156788899999999999999 7767653

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.12  E-value=1.5e-09  Score=70.31  Aligned_cols=140  Identities=7%  Similarity=-0.118  Sum_probs=108.2

Q ss_pred             HHHhhhhhhhHHHHH-----HcCCCc-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcCh
Q 045498           18 RINGMCKIREIDSAI-----KKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGR   91 (207)
Q Consensus        18 ll~~~~~~g~~~~a~-----~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~   91 (207)
                      |-..+...|++++|+     .....| ++..+-.+-..|.+.|++++|++.|++..+.. +-+..+|..+-.++...|++
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence            445667789999988     222333 34556778899999999999999999998875 55778999999999999999


Q ss_pred             hhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHH-HHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 045498           92 FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKK-LDQLSEKGLVPGVVTYNILINGLCKKGM  160 (207)
Q Consensus        92 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~-~~~~~~~g~~~~~~~~~~li~~~~~~~~  160 (207)
                      ++|...|++..+... -+...+..+...|.+.|++++|.+. +++..+..+. +...|......+...|+
T Consensus        82 ~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           82 DKAVECYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence            999999999988753 3678899999999999999876665 5887776433 56677777777666664

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.10  E-value=1e-08  Score=86.17  Aligned_cols=177  Identities=12%  Similarity=0.061  Sum_probs=121.1

Q ss_pred             hhhhHHHHHhhhhhhhHHHHHHcCC-CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcC
Q 045498           12 FHVYGIRINGMCKIREIDSAIKKGI-CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG   90 (207)
Q Consensus        12 ~~~~~~ll~~~~~~g~~~~a~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~   90 (207)
                      +.+|..+..++...|++++|+..=. .-|...|..++.+|.+.|++++|.+.+...++..  +++...+.+..+|++.++
T Consensus      1105 p~vWsqLAKAql~~G~~kEAIdsYiKAdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~r 1182 (1630)
T 1xi4_A         1105 PAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNR 1182 (1630)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcC
Confidence            5677788888888888888882211 2456677778888888888888888887766543  333344457777777777


Q ss_pred             hhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 045498           91 RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQ  170 (207)
Q Consensus        91 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  170 (207)
                      +++.....    +   .++...|..+...|...|++++|..+|...         ..|..+...+++.|++++|.+.++.
T Consensus      1183 leele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarK 1246 (1630)
T 1xi4_A         1183 LAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARK 1246 (1630)
T ss_pred             HHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            76533332    1   345556667777778888888888888763         3777788888888888887777765


Q ss_pred             HHHc------------------------CCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          171 MKEK------------------------GCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       171 m~~~------------------------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      ....                        ++..++..+..++..|.+.|.+++|..+++..
T Consensus      1247 A~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A         1247 ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred             hCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4221                        12224555667888888888888888888654

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.10  E-value=1.2e-07  Score=73.01  Aligned_cols=155  Identities=16%  Similarity=0.059  Sum_probs=93.3

Q ss_pred             HHhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhh-----cChhhHHHHHHHHHhCCCCccH
Q 045498           40 VFVYSSLINGLCT----FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK-----QGRFSAMALLQTLERDKYELNI  110 (207)
Q Consensus        40 ~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~  110 (207)
                      +..+..+-..+..    .+++++|+..|++..+.|   +...+..+-..+...     ++.++|...+++..+.+   +.
T Consensus       255 ~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~  328 (490)
T 2xm6_A          255 SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DA  328 (490)
T ss_dssp             HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CH
T ss_pred             HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CH
Confidence            3344444444544    556666666666655543   223444444444444     56666666666666554   23


Q ss_pred             HHHHHHHHHHhcCC---CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhH
Q 045498          111 EVYSLVIDGLCRVG---RWEEARKKLDQLSEKGLVPGVVTYNILINGLCK----KGMIMEADKLLVQMKEKGCFPDSTSF  183 (207)
Q Consensus       111 ~~~~~li~~~~~~~---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~  183 (207)
                      ..+..+-..|.+.|   ++++|.+.+++..+.|   +...+..+...|..    .+++++|...|++..+.|   +...+
T Consensus       329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~  402 (490)
T 2xm6_A          329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQ  402 (490)
T ss_dssp             HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHH
Confidence            34555555555444   5667777777766653   55666677777766    677777777777777654   45666


Q ss_pred             HHHHHHHHh----cCchhHHHHHHHhh
Q 045498          184 NTVIQGFLV----KNETDRASSFLKKN  206 (207)
Q Consensus       184 ~~l~~~~~~----~~~~~~a~~~~~~m  206 (207)
                      ..|...|.+    .++.++|.++|++.
T Consensus       403 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A  429 (490)
T 2xm6_A          403 VQLGEIYYYGLGVERDYVQAWAWFDTA  429 (490)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            667777766    67777777777653

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.10  E-value=9.6e-09  Score=80.62  Aligned_cols=148  Identities=11%  Similarity=-0.075  Sum_probs=59.6

Q ss_pred             CChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHH
Q 045498           54 NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKL  133 (207)
Q Consensus        54 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  133 (207)
                      |++++|++.|++..+.. +.+...+..+-..+...|++++|...+++..+.. +.+...+..+..+|.+.|++++|.+.+
T Consensus         3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            34444444444444332 2233444444444445555555555555444432 113444444444555555555555555


Q ss_pred             HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc---CchhHHHHHHHh
Q 045498          134 DQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK---NETDRASSFLKK  205 (207)
Q Consensus       134 ~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---~~~~~a~~~~~~  205 (207)
                      ++..+.... +...+..+..++.+.|++++|...+++..+.. +.+..++..+..++...   |+.++|.+.+++
T Consensus        81 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~  153 (568)
T 2vsy_A           81 QQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRA  153 (568)
T ss_dssp             HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred             HHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence            544443221 33444444455555555555555555444431 12334444444444444   455555444443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.10  E-value=1.2e-07  Score=72.99  Aligned_cols=182  Identities=10%  Similarity=-0.005  Sum_probs=97.8

Q ss_pred             hhhhHHHHHhhhh----hhhHHHHH----HcCCCccHHhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCcchhhHH
Q 045498           12 FHVYGIRINGMCK----IREIDSAI----KKGICLDVFVYSSLINGLCT----FNRLKEAVELFDKMVAQGITAELVTYN   79 (207)
Q Consensus        12 ~~~~~~ll~~~~~----~g~~~~a~----~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~   79 (207)
                      +..+..+-..|..    .+++++|.    ...-.-++..+..|-..|..    .+++++|...|++..+.|   +...+.
T Consensus        39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~  115 (490)
T 2xm6_A           39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQ  115 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            3444444444544    55666555    00001244555566666666    666667777666666654   334444


Q ss_pred             HHHhhHhh----hcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhc----CCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 045498           80 PLIHDNWE----KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR----VGRWEEARKKLDQLSEKGLVPGVVTYNIL  151 (207)
Q Consensus        80 ~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l  151 (207)
                      .|-..|..    .+++++|...|++..+.|   +...+..+-..|..    .+++++|.+.|++..+.|   +...+..+
T Consensus       116 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~L  189 (490)
T 2xm6_A          116 NLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQL  189 (490)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence            45555555    556666666666665554   33444555555544    556666666666665543   44555555


Q ss_pred             HHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCchhHHHHHHHh
Q 045498          152 INGLCK----KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV----KNETDRASSFLKK  205 (207)
Q Consensus       152 i~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~  205 (207)
                      ...|.+    .+++++|...|+...+.|   +..++..+...|..    .+++++|.+++++
T Consensus       190 g~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~  248 (490)
T 2xm6_A          190 GYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQ  248 (490)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             HHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            555555    556666666666555542   33444445555543    4555555555543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.08  E-value=1.8e-08  Score=72.53  Aligned_cols=142  Identities=9%  Similarity=0.011  Sum_probs=111.0

Q ss_pred             HHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCC-CccHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 045498           59 AVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKY-ELNIEVYSLVIDGLCRVGRWEEARKKLDQLS  137 (207)
Q Consensus        59 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  137 (207)
                      ++..|++....+ +++..++..+..++...|++++|++++.+....+. .-+...+...+..+.+.|+.+.|.+.++.|.
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            667777777655 45666667888999999999999999999877654 2367788889999999999999999999998


Q ss_pred             hCCCCC-----ChhhHHHHHHHH--HhcC--CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498          138 EKGLVP-----GVVTYNILINGL--CKKG--MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK  205 (207)
Q Consensus       138 ~~g~~~-----~~~~~~~li~~~--~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  205 (207)
                      +.  .|     +..+...|..++  ...|  ++.+|..+|+++.+.  .|+..+-..++.++.+.|++++|.+.++.
T Consensus       164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~  236 (310)
T 3mv2_B          164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVEL  236 (310)
T ss_dssp             HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence            86  45     356666676663  3334  899999999998765  45533344455589999999999999875

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.08  E-value=1e-08  Score=70.07  Aligned_cols=162  Identities=10%  Similarity=-0.011  Sum_probs=122.7

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHH----------------HHhhHhhhcChhhHHHHHHHHHhC
Q 045498           41 FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNP----------------LIHDNWEKQGRFSAMALLQTLERD  104 (207)
Q Consensus        41 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~----------------ll~~~~~~~~~~~a~~~~~~m~~~  104 (207)
                      ..+-.....+.+.|++++|+..|++..+.. +-+...|..                +-.++...|++++|...+++..+.
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A            5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            344445566778999999999999998764 334455666                888999999999999999999887


Q ss_pred             CCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCChhh
Q 045498          105 KYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM--IMEADKLLVQMKEKGCFPDSTS  182 (207)
Q Consensus       105 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~  182 (207)
                      .. -+...+..+..++...|++++|...|++..+..+. +..++..+...|...|+  ...+...++....  ..|....
T Consensus        84 ~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a  159 (208)
T 3urz_A           84 AP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYA  159 (208)
T ss_dssp             CT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHH
T ss_pred             CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHH
Confidence            53 37889999999999999999999999999988544 67788888888876654  3455555555432  2233334


Q ss_pred             HHHHHHHHHhcCchhHHHHHHHhhC
Q 045498          183 FNTVIQGFLVKNETDRASSFLKKNM  207 (207)
Q Consensus       183 ~~~l~~~~~~~~~~~~a~~~~~~m~  207 (207)
                      +.....++...|++++|...|++.+
T Consensus       160 ~~~~g~~~~~~~~~~~A~~~~~~al  184 (208)
T 3urz_A          160 RYRDGLSKLFTTRYEKARNSLQKVI  184 (208)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHH
Confidence            5556667778899999999998764

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.08  E-value=2e-08  Score=65.52  Aligned_cols=131  Identities=8%  Similarity=-0.007  Sum_probs=96.7

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHH
Q 045498           40 VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG  119 (207)
Q Consensus        40 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  119 (207)
                      ...+..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~   90 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS   90 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence            4556777778888889999998888887764 4456777778888888888888888888877764 3356778888888


Q ss_pred             HhcCCCHHHHHHHHHHHHhCCCCCChhhHH--HHHHHHHhcCCHHHHHHHHHHHHH
Q 045498          120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYN--ILINGLCKKGMIMEADKLLVQMKE  173 (207)
Q Consensus       120 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~  173 (207)
                      +.+.|++++|.+.+++..+.... +...+.  .....+.+.|++++|...+.....
T Consensus        91 ~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           91 NMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            88888888888888888776432 344443  333446677888888888876543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.08  E-value=5.2e-08  Score=72.21  Aligned_cols=193  Identities=13%  Similarity=0.027  Sum_probs=137.7

Q ss_pred             hhHHHHHhhhhhhhHHHHH-----------HcCCC--c-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--c--ch
Q 045498           14 VYGIRINGMCKIREIDSAI-----------KKGIC--L-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGIT--A--EL   75 (207)
Q Consensus        14 ~~~~ll~~~~~~g~~~~a~-----------~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~--~~   75 (207)
                      ++..+...+...|++++|.           ..+..  | ....+..+...+...|++++|...+++.......  +  ..
T Consensus        95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  174 (373)
T 1hz4_A           95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL  174 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence            3566777788899999887           22322  3 3456777888899999999999999998754221  1  23


Q ss_pred             hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCcc--HHHHH----HHHHHHhcCCCHHHHHHHHHHHHhCCCCCC---hh
Q 045498           76 VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN--IEVYS----LVIDGLCRVGRWEEARKKLDQLSEKGLVPG---VV  146 (207)
Q Consensus        76 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~----~li~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~  146 (207)
                      .++..+...+...|++++|...+++.......++  .....    .....+...|++++|...++........++   ..
T Consensus       175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  254 (373)
T 1hz4_A          175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG  254 (373)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence            4677788889999999999999998765421111  11111    233457799999999999998876533211   22


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCh-hhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          147 TYNILINGLCKKGMIMEADKLLVQMKEK----GCFPDS-TSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       147 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      .+..+...+...|++++|...++.....    |..++. .++..+..++...|+.++|...+++.
T Consensus       255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a  319 (373)
T 1hz4_A          255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA  319 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            4667788999999999999999987643    222233 36777788899999999999988764

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.06  E-value=1.8e-08  Score=62.22  Aligned_cols=96  Identities=16%  Similarity=0.152  Sum_probs=43.2

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 045498           41 FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL  120 (207)
Q Consensus        41 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  120 (207)
                      ..+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~   87 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence            344445555555555555555555554432 2233344444444444444444444444444332 12333444444444


Q ss_pred             hcCCCHHHHHHHHHHHHh
Q 045498          121 CRVGRWEEARKKLDQLSE  138 (207)
Q Consensus       121 ~~~~~~~~a~~~~~~~~~  138 (207)
                      .+.|++++|...++++.+
T Consensus        88 ~~~~~~~~A~~~~~~~~~  105 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALE  105 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHH
Confidence            444444444444444443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.06  E-value=7.3e-09  Score=68.83  Aligned_cols=157  Identities=13%  Similarity=-0.030  Sum_probs=119.2

Q ss_pred             hhHHHHHhhhhhhhHHHHH---HcCC---CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhh-Hh
Q 045498           14 VYGIRINGMCKIREIDSAI---KKGI---CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHD-NW   86 (207)
Q Consensus        14 ~~~~ll~~~~~~g~~~~a~---~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~   86 (207)
                      .+......+.+.|++++|.   +..+   +.+...+..+...+.+.|++++|+..|++.....  |+...+..+... +.
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~   85 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH   85 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence            4556677888999999998   3333   3356788999999999999999999999987653  344333332212 12


Q ss_pred             hhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHH
Q 045498           87 EKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP-GVVTYNILINGLCKKGMIMEAD  165 (207)
Q Consensus        87 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~~~~~~a~  165 (207)
                      ..+...++...+++..+.. +-+...+..+..++...|++++|...+++..+....+ +...+..+...+...|+.++|.
T Consensus        86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~  164 (176)
T 2r5s_A           86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA  164 (176)
T ss_dssp             HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred             hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence            2234445788888887764 2367889999999999999999999999999875443 3568899999999999999999


Q ss_pred             HHHHHHHH
Q 045498          166 KLLVQMKE  173 (207)
Q Consensus       166 ~~~~~m~~  173 (207)
                      ..|++...
T Consensus       165 ~~y~~al~  172 (176)
T 2r5s_A          165 SKYRRQLY  172 (176)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99987654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.06  E-value=4.7e-08  Score=66.58  Aligned_cols=127  Identities=11%  Similarity=-0.012  Sum_probs=108.6

Q ss_pred             hhHHHHHhhhhhhhHHHHH---HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcC
Q 045498           14 VYGIRINGMCKIREIDSAI---KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG   90 (207)
Q Consensus        14 ~~~~ll~~~~~~g~~~~a~---~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~   90 (207)
                      .+..+...+...|++++|.   ...+.|+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|+
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~   86 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK   86 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence            4556677888999999999   66678899999999999999999999999999998775 4567789999999999999


Q ss_pred             hhhHHHHHHHHHhCCCC--------------c-cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC
Q 045498           91 RFSAMALLQTLERDKYE--------------L-NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGL  141 (207)
Q Consensus        91 ~~~a~~~~~~m~~~~~~--------------~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~  141 (207)
                      +++|...+++..+....              | ....+..+..++.+.|++++|.+.++...+...
T Consensus        87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  152 (213)
T 1hh8_A           87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS  152 (213)
T ss_dssp             HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence            99999999998875321              1 237888899999999999999999999998743

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.06  E-value=7.1e-09  Score=75.14  Aligned_cols=158  Identities=13%  Similarity=0.045  Sum_probs=91.4

Q ss_pred             hhHHHHHhhhhhhhHHHHH-----------HcCCCc-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCc-chh
Q 045498           14 VYGIRINGMCKIREIDSAI-----------KKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQ----GITA-ELV   76 (207)
Q Consensus        14 ~~~~ll~~~~~~g~~~~a~-----------~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~   76 (207)
                      .|+.....|...|++++|.           ..+..+ -..+|+.+...|.+.|++++|+..|++..+.    |-+. ...
T Consensus        38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~  117 (307)
T 2ifu_A           38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM  117 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            5556666666667777666           222111 1345666677777777777777777765432    2111 124


Q ss_pred             hHHHHHhhHhhhcChhhHHHHHHHHHhCCCC----c-cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCCCC-hh
Q 045498           77 TYNPLIHDNWEKQGRFSAMALLQTLERDKYE----L-NIEVYSLVIDGLCRVGRWEEARKKLDQLSEK----GLVPG-VV  146 (207)
Q Consensus        77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~----~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~~~-~~  146 (207)
                      ++..+-.+|.. |++++|...+++..+....    + ...++..+...|.+.|++++|.+.+++..+.    +..+. ..
T Consensus       118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  196 (307)
T 2ifu_A          118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK  196 (307)
T ss_dssp             HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence            55566666666 7777777777765443111    0 1345666677777777777777777766543    11111 12


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045498          147 TYNILINGLCKKGMIMEADKLLVQMK  172 (207)
Q Consensus       147 ~~~~li~~~~~~~~~~~a~~~~~~m~  172 (207)
                      .+..+..++...|++++|...|++..
T Consensus       197 ~~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          197 KCIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            45555566666677777777777766

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.05  E-value=2.1e-08  Score=74.71  Aligned_cols=185  Identities=9%  Similarity=-0.050  Sum_probs=136.2

Q ss_pred             HhhhhhhhHHHHH---H------c--CCC-ccHHhHHHHHHHHHhcCChhHHHHHHHHHHhC----C-CCc-chhhHHHH
Q 045498           20 NGMCKIREIDSAI---K------K--GIC-LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ----G-ITA-ELVTYNPL   81 (207)
Q Consensus        20 ~~~~~~g~~~~a~---~------~--~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~-~~~-~~~~~~~l   81 (207)
                      ..+...|++++|+   .      .  +-. ....++..+...|...|+++.|...+++..+.    + ..+ ...+++.+
T Consensus       109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  188 (378)
T 3q15_A          109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI  188 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence            3445778888888   1      1  111 13567888999999999999999999987642    1 111 24577888


Q ss_pred             HhhHhhhcChhhHHHHHHHHHhC----CCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-----CCCCCChhhHHHH
Q 045498           82 IHDNWEKQGRFSAMALLQTLERD----KYE-LNIEVYSLVIDGLCRVGRWEEARKKLDQLSE-----KGLVPGVVTYNIL  151 (207)
Q Consensus        82 l~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~~~~l  151 (207)
                      -.++...|++++|...+++..+.    +.. ....++..+..+|...|++++|.+.+++..+     .... ...++..+
T Consensus       189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~l  267 (378)
T 3q15_A          189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGL  267 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHH
Confidence            88999999999999999887653    211 1245788888999999999999999998876     4322 36778889


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCC----CCChhhHHHHHHHHHhcCc---hhHHHHHHHh
Q 045498          152 INGLCKKGMIMEADKLLVQMKEKGC----FPDSTSFNTVIQGFLVKNE---TDRASSFLKK  205 (207)
Q Consensus       152 i~~~~~~~~~~~a~~~~~~m~~~~~----~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~  205 (207)
                      ...+.+.|++++|...+++..+...    +.....+..+...+...++   +++|..++++
T Consensus       268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~  328 (378)
T 3q15_A          268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK  328 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            9999999999999999999886522    1223445666666777777   7778777664

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.05  E-value=5.4e-09  Score=70.64  Aligned_cols=154  Identities=12%  Similarity=-0.090  Sum_probs=82.1

Q ss_pred             hcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhC----CCC-ccHHHHHHHHHHHhcCCCH
Q 045498           52 TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERD----KYE-LNIEVYSLVIDGLCRVGRW  126 (207)
Q Consensus        52 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~~~~  126 (207)
                      ..|++++|.+.++.+... ......++..+-..+...|++++|...+++..+.    +.. ....++..+...+...|++
T Consensus         4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            456666666644444321 1223455666666666667777666666665431    111 1234555666666667777


Q ss_pred             HHHHHHHHHHHhC----CCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCC--hhhHHHHHHHHHhcCc
Q 045498          127 EEARKKLDQLSEK----GLVP--GVVTYNILINGLCKKGMIMEADKLLVQMKEKG---CFPD--STSFNTVIQGFLVKNE  195 (207)
Q Consensus       127 ~~a~~~~~~~~~~----g~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~p~--~~~~~~l~~~~~~~~~  195 (207)
                      ++|.+.+++..+.    +-.|  ....+..+...+...|++++|...+++..+..   -.+.  ..++..+...+...|+
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  162 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN  162 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence            7776666655432    1111  13345566666666677777777666654321   0111  1234556666666777


Q ss_pred             hhHHHHHHHhh
Q 045498          196 TDRASSFLKKN  206 (207)
Q Consensus       196 ~~~a~~~~~~m  206 (207)
                      +++|.+.+++.
T Consensus       163 ~~~A~~~~~~a  173 (203)
T 3gw4_A          163 LLEAQQHWLRA  173 (203)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77776666553

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.04  E-value=3.3e-08  Score=64.45  Aligned_cols=127  Identities=10%  Similarity=-0.059  Sum_probs=104.5

Q ss_pred             hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 045498           76 VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGL  155 (207)
Q Consensus        76 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~  155 (207)
                      ..+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|.+.+++..+.... +...+..+..++
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~   91 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence            456777788899999999999999988765 336788999999999999999999999999887533 677899999999


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCChhhHHH--HHHHHHhcCchhHHHHHHHh
Q 045498          156 CKKGMIMEADKLLVQMKEKGCFPDSTSFNT--VIQGFLVKNETDRASSFLKK  205 (207)
Q Consensus       156 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~--l~~~~~~~~~~~~a~~~~~~  205 (207)
                      ...|++++|...|++..+.. +.+...+..  ....+...|++++|.+.+++
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  142 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEH  142 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            99999999999999998763 224445533  44447788999999998875

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.04  E-value=5.8e-09  Score=69.21  Aligned_cols=135  Identities=7%  Similarity=0.044  Sum_probs=100.9

Q ss_pred             HhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHH-HhcCCCH--H
Q 045498           51 CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG-LCRVGRW--E  127 (207)
Q Consensus        51 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~~~~--~  127 (207)
                      ...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+... .+...+..+..+ +...|++  +
T Consensus        21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchH
Confidence            45678889999998887764 45667888888899999999999999998877652 366777777777 7788998  9


Q ss_pred             HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 045498          128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF  190 (207)
Q Consensus       128 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~  190 (207)
                      +|...++...+.... +...+..+...+...|++++|...|+...+.  .|+......++...
T Consensus        99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~i  158 (177)
T 2e2e_A           99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL--NSPRINRTQLVESI  158 (177)
T ss_dssp             HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CCTTSCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh--CCCCccHHHHHHHH
Confidence            999999998887533 5678888889999999999999999998876  34433333444433

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.04  E-value=6.8e-08  Score=66.72  Aligned_cols=163  Identities=13%  Similarity=-0.006  Sum_probs=118.1

Q ss_pred             chhhhHHHHHhhhhhhhHHHHH-------HcC--CCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcch---hhH
Q 045498           11 NFHVYGIRINGMCKIREIDSAI-------KKG--ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL---VTY   78 (207)
Q Consensus        11 ~~~~~~~ll~~~~~~g~~~~a~-------~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~   78 (207)
                      +...+-.+...+.+.|++++|+       ...  .+.....+..+..++.+.|++++|+..|++..+.... +.   ..+
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~~~a~   81 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVM   81 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcHHHHH
Confidence            3445566677888999999998       211  1112467888899999999999999999999876421 22   133


Q ss_pred             HHHHhhHhh------------------hcChhhHHHHHHHHHhCCCCccHHHH-----------------HHHHHHHhcC
Q 045498           79 NPLIHDNWE------------------KQGRFSAMALLQTLERDKYELNIEVY-----------------SLVIDGLCRV  123 (207)
Q Consensus        79 ~~ll~~~~~------------------~~~~~~a~~~~~~m~~~~~~~~~~~~-----------------~~li~~~~~~  123 (207)
                      ..+-.++..                  .|+.++|...|+++.+.... +....                 ..+...|.+.
T Consensus        82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~  160 (225)
T 2yhc_A           82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFLKDRLAKYEYSVAEYYTER  160 (225)
T ss_dssp             HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            333334433                  57899999999999876422 22121                 2445678899


Q ss_pred             CCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045498          124 GRWEEARKKLDQLSEKGLVPG--VVTYNILINGLCKKGMIMEADKLLVQMKEKG  175 (207)
Q Consensus       124 ~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  175 (207)
                      |++++|...|+.+.+......  ...+..+..++.+.|++++|...++.+...+
T Consensus       161 ~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          161 GAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             TCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             CcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence            999999999999988733211  2568889999999999999999999988763

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.04  E-value=4e-08  Score=72.84  Aligned_cols=193  Identities=11%  Similarity=0.017  Sum_probs=136.8

Q ss_pred             hhHHHHHhhhhhhhHHHHH-----------HcCCCc-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC--c-c
Q 045498           14 VYGIRINGMCKIREIDSAI-----------KKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQ----GIT--A-E   74 (207)
Q Consensus        14 ~~~~ll~~~~~~g~~~~a~-----------~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~--~-~   74 (207)
                      +++.+...+...|++++|.           ..+... ...++..+...+...|++++|...+++..+.    +.+  | .
T Consensus        55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~  134 (373)
T 1hz4_A           55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH  134 (373)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence            4566677788899999887           222111 1234667778889999999999999988643    222  2 2


Q ss_pred             hhhHHHHHhhHhhhcChhhHHHHHHHHHhCCC----CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCh-hhHH
Q 045498           75 LVTYNPLIHDNWEKQGRFSAMALLQTLERDKY----ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV-VTYN  149 (207)
Q Consensus        75 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~  149 (207)
                      ..++..+-..+...|++++|...+++......    ......+..+...+...|++++|...+++.......++. ..+.
T Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~  214 (373)
T 1hz4_A          135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI  214 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHH
Confidence            34566677888999999999999998765432    113457778888999999999999999988654222211 1222


Q ss_pred             -----HHHHHHHhcCCHHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          150 -----ILINGLCKKGMIMEADKLLVQMKEKGCFP---DSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       150 -----~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                           ..+..+...|++++|...+++.......+   ....+..+...+...|++++|...+++.
T Consensus       215 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a  279 (373)
T 1hz4_A          215 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEEL  279 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                 23345779999999999998876543211   1234677888999999999999988764

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.02  E-value=2.8e-08  Score=62.25  Aligned_cols=98  Identities=8%  Similarity=-0.024  Sum_probs=44.0

Q ss_pred             cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHH
Q 045498           39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID  118 (207)
Q Consensus        39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  118 (207)
                      +...+..+...+.+.|++++|...|++..+.. +.+..++..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~   92 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA   92 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence            34444555555555555555555555554432 2233344444444444444444444444444332 113334444444


Q ss_pred             HHhcCCCHHHHHHHHHHHHh
Q 045498          119 GLCRVGRWEEARKKLDQLSE  138 (207)
Q Consensus       119 ~~~~~~~~~~a~~~~~~~~~  138 (207)
                      ++.+.|++++|.+.+++..+
T Consensus        93 ~~~~~~~~~~A~~~~~~~~~  112 (133)
T 2lni_A           93 ALEAMKDYTKAMDVYQKALD  112 (133)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHH
Confidence            44444444444444444433

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.01  E-value=4.4e-08  Score=60.46  Aligned_cols=116  Identities=14%  Similarity=0.046  Sum_probs=94.9

Q ss_pred             hhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 045498           75 LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING  154 (207)
Q Consensus        75 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~  154 (207)
                      ...+..+...+...|++++|...+++..+.. +.+...+..+...+.+.|++++|...++++.+... .+..++..+...
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence            4677888889999999999999999988764 34677889999999999999999999999988753 367788999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 045498          155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK  193 (207)
Q Consensus       155 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~  193 (207)
                      +...|++++|...++++.+.. +.+...+..+...+...
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~  124 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQKQ  124 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhc
Confidence            999999999999999998763 23455566565555443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.01  E-value=2.9e-08  Score=75.80  Aligned_cols=169  Identities=14%  Similarity=-0.017  Sum_probs=105.2

Q ss_pred             CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhh-------------------cChhhHHHH
Q 045498           37 CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK-------------------QGRFSAMAL   97 (207)
Q Consensus        37 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-------------------~~~~~a~~~   97 (207)
                      +.+..++..+...+.+.|++++|+..+++..+.. |-+..++..+-.++...                   +..+.|...
T Consensus       244 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  322 (472)
T 4g1t_A          244 PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAH  322 (472)
T ss_dssp             SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHH
Confidence            3456667778888888888888888888877653 33444555554443321                   234556666


Q ss_pred             HHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChh--hHHHHHH-HHHhcCCHHHHHHHHHHHHHc
Q 045498           98 LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVV--TYNILIN-GLCKKGMIMEADKLLVQMKEK  174 (207)
Q Consensus        98 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~-~~~~~~~~~~a~~~~~~m~~~  174 (207)
                      +++..+.. +.+...+..+...+.+.|++++|.+.|++..+....+...  .+..+.. .....|++++|...|++..+.
T Consensus       323 ~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i  401 (472)
T 4g1t_A          323 LKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI  401 (472)
T ss_dssp             HHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred             HHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            66665543 2244567778888899999999999999988875443221  1222222 234678889998888776543


Q ss_pred             C-----------------------CCCChhhHHHHHHHHHhcCchhHHHHHHHhhC
Q 045498          175 G-----------------------CFPDSTSFNTVIQGFLVKNETDRASSFLKKNM  207 (207)
Q Consensus       175 ~-----------------------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~  207 (207)
                      .                       -+.+..+|..+...|...|++++|.+.|++.+
T Consensus       402 ~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kAL  457 (472)
T 4g1t_A          402 NQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGL  457 (472)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            1                       13356788899999999999999999988753

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.00  E-value=2e-08  Score=62.55  Aligned_cols=116  Identities=10%  Similarity=-0.026  Sum_probs=59.0

Q ss_pred             hHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 045498           77 TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC  156 (207)
Q Consensus        77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~  156 (207)
                      .+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...+.... +...+..+...+.
T Consensus        14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~   91 (131)
T 2vyi_A           14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLALS   91 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHHH
Confidence            44444444455555555555555544432 123445555555555555555555555555544221 3445555555566


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCc
Q 045498          157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE  195 (207)
Q Consensus       157 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~  195 (207)
                      +.|++++|...|++..+.. +.+...+..+..++...|+
T Consensus        92 ~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           92 SLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred             HhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence            6666666666666555542 1244455555555555544

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.99  E-value=3.6e-08  Score=61.37  Aligned_cols=121  Identities=12%  Similarity=-0.054  Sum_probs=101.6

Q ss_pred             ccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHH
Q 045498           38 LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI  117 (207)
Q Consensus        38 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li  117 (207)
                      .+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~   87 (131)
T 2vyi_A           10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMG   87 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHH
Confidence            356778888899999999999999999998764 4567788889999999999999999999988764 33677888999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 045498          118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI  161 (207)
Q Consensus       118 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~  161 (207)
                      ..+.+.|++++|.+.+++..+.... +...+..+..++.+.|++
T Consensus        88 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           88 LALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence            9999999999999999999887533 567777777887777654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.98  E-value=3.2e-08  Score=71.65  Aligned_cols=174  Identities=10%  Similarity=-0.054  Sum_probs=129.7

Q ss_pred             hhhHHHHHHcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCc-chhhHHHHHhhHhhhcChhhHHHHHH
Q 045498           25 IREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQ----GITA-ELVTYNPLIHDNWEKQGRFSAMALLQ   99 (207)
Q Consensus        25 ~g~~~~a~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~   99 (207)
                      .++++.|.        ..|+.....|...|++++|...|.+..+.    +-++ -..+|+.+...|...|++++|...++
T Consensus        29 ~~~~~~A~--------~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~  100 (307)
T 2ifu_A           29 KPDYDSAA--------SEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIE  100 (307)
T ss_dssp             SCCHHHHH--------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHH
T ss_pred             CCCHHHHH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            45666665        23556677888999999999999987542    2211 13578888899999999999999998


Q ss_pred             HHHhC----CCCc-cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 045498          100 TLERD----KYEL-NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP-----GVVTYNILINGLCKKGMIMEADKLLV  169 (207)
Q Consensus       100 ~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~  169 (207)
                      +..+.    |-.. ...++..+...|.+ |++++|.+.+++..+.....     ...++..+...|.+.|++++|...|+
T Consensus       101 ~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~  179 (307)
T 2ifu_A          101 KASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQ  179 (307)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            86543    2111 24678888889988 99999999999876541110     14678899999999999999999999


Q ss_pred             HHHHc----CCCCC-hhhHHHHHHHHHhcCchhHHHHHHHhhC
Q 045498          170 QMKEK----GCFPD-STSFNTVIQGFLVKNETDRASSFLKKNM  207 (207)
Q Consensus       170 ~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~  207 (207)
                      +..+.    +..++ ..++..+..++...|++++|...+++.+
T Consensus       180 ~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          180 KEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            98763    22122 2367777788888899999999998753

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.98  E-value=3.2e-08  Score=71.05  Aligned_cols=161  Identities=13%  Similarity=0.004  Sum_probs=126.2

Q ss_pred             cchhhhHHHHHhhhhhhhHHHHH-----H-cCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHH-HH
Q 045498           10 GNFHVYGIRINGMCKIREIDSAI-----K-KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNP-LI   82 (207)
Q Consensus        10 p~~~~~~~ll~~~~~~g~~~~a~-----~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-ll   82 (207)
                      .+...+..+...+...|++++|.     . ..-+-+...+..+...+.+.|++++|...+++.....  |+...... ..
T Consensus       115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~  192 (287)
T 3qou_A          115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ  192 (287)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence            34455667777888899999998     1 2223367789999999999999999999999987663  44433222 23


Q ss_pred             hhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCH
Q 045498           83 HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP-GVVTYNILINGLCKKGMI  161 (207)
Q Consensus        83 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~~~~  161 (207)
                      ..+...++.++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+..... +...+..+...+...|+.
T Consensus       193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~  271 (287)
T 3qou_A          193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG  271 (287)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred             HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence            34667788888999999988775 3478899999999999999999999999999875432 267899999999999999


Q ss_pred             HHHHHHHHHHHH
Q 045498          162 MEADKLLVQMKE  173 (207)
Q Consensus       162 ~~a~~~~~~m~~  173 (207)
                      ++|...|++...
T Consensus       272 ~~a~~~~r~al~  283 (287)
T 3qou_A          272 DALASXYRRQLY  283 (287)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHH
Confidence            999998887543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.98  E-value=6.2e-08  Score=60.61  Aligned_cols=120  Identities=8%  Similarity=-0.021  Sum_probs=98.9

Q ss_pred             CcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 045498           72 TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL  151 (207)
Q Consensus        72 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l  151 (207)
                      +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|.+.+++..+.... +...+..+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l   90 (133)
T 2lni_A           13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRK   90 (133)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence            4456778888899999999999999999988765 336788999999999999999999999999887533 67889999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 045498          152 INGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN  194 (207)
Q Consensus       152 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~  194 (207)
                      ..++.+.|++++|...|++..+.. +.+...+..+..++...|
T Consensus        91 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           91 AAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence            999999999999999999988763 224456666766666554

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.97  E-value=5.1e-08  Score=61.13  Aligned_cols=95  Identities=13%  Similarity=-0.003  Sum_probs=44.6

Q ss_pred             HHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 045498           78 YNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK  157 (207)
Q Consensus        78 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~  157 (207)
                      +...-..+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|.+.+++..+.... +...|..+..++..
T Consensus        16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~   93 (126)
T 4gco_A           16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVA   93 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHH
Confidence            3333444444444444444444444332 123444444445555555555555555554444322 34445555555555


Q ss_pred             cCCHHHHHHHHHHHHHc
Q 045498          158 KGMIMEADKLLVQMKEK  174 (207)
Q Consensus       158 ~~~~~~a~~~~~~m~~~  174 (207)
                      .|++++|...|+...+.
T Consensus        94 ~~~~~~A~~~~~~al~l  110 (126)
T 4gco_A           94 MREWSKAQRAYEDALQV  110 (126)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            55555555555554443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.96  E-value=3.5e-08  Score=63.92  Aligned_cols=103  Identities=9%  Similarity=-0.081  Sum_probs=84.4

Q ss_pred             hhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 045498           75 LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING  154 (207)
Q Consensus        75 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~  154 (207)
                      ...+..+-..+...|++++|...|++..+.. +.+...|..+..+|.+.|++++|...|++..+..+. +...|..+..+
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~  113 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQC  113 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHH
Confidence            3466777778888999999999999988775 336788888889999999999999999998887544 67788888899


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCChh
Q 045498          155 LCKKGMIMEADKLLVQMKEKGCFPDST  181 (207)
Q Consensus       155 ~~~~~~~~~a~~~~~~m~~~~~~p~~~  181 (207)
                      |.+.|++++|...|+...+.  .|+..
T Consensus       114 ~~~lg~~~eA~~~~~~al~l--~~~~~  138 (151)
T 3gyz_A          114 QLRLKAPLKAKECFELVIQH--SNDEK  138 (151)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred             HHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence            99999999999999998876  35553

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.95  E-value=1.5e-07  Score=79.35  Aligned_cols=158  Identities=16%  Similarity=0.153  Sum_probs=119.5

Q ss_pred             hhhhHHHHHH--cCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHH
Q 045498           24 KIREIDSAIK--KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTL  101 (207)
Q Consensus        24 ~~g~~~~a~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m  101 (207)
                      ..+++++|.+  ..+ -++.+|..+-.++.+.|++++|++.|.+.      -|...|..++.++.+.|++++|.+.+...
T Consensus      1088 ~i~nldrAiE~Aerv-n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mA 1160 (1630)
T 1xi4_A         1088 HIGNLDRAYEFAERC-NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMA 1160 (1630)
T ss_pred             HHhhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            5556666662  222 34677888889999999999999998553      35667888899999999999999999876


Q ss_pred             HhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 045498          102 ERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST  181 (207)
Q Consensus       102 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~  181 (207)
                      .+..  ++....+.+..+|++.+++++...+.    +   .++...|..+...|...|++++|..+|...         .
T Consensus      1161 rk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ 1222 (1630)
T 1xi4_A         1161 RKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------S 1222 (1630)
T ss_pred             Hhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------h
Confidence            6654  23333345888889988888644442    2   346677778889999999999999999984         4


Q ss_pred             hHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          182 SFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       182 ~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      .|..+..++++.|++++|.+.+++.
T Consensus      1223 ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A         1223 NFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHh
Confidence            7888999999999999999888753

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.95  E-value=6.5e-08  Score=71.05  Aligned_cols=129  Identities=3%  Similarity=-0.201  Sum_probs=79.4

Q ss_pred             hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCcc--------------HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC
Q 045498           76 VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN--------------IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGL  141 (207)
Q Consensus        76 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~  141 (207)
                      ..+..+-..+.+.|++++|...|++..+......              ...|..+..+|.+.|++++|...+++..+...
T Consensus       148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p  227 (336)
T 1p5q_A          148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS  227 (336)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            4455555566666666666666666555432211              35666667777777777777777777666543


Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHH-HHHHHhh
Q 045498          142 VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRA-SSFLKKN  206 (207)
Q Consensus       142 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a-~~~~~~m  206 (207)
                      . +...+..+..+|...|++++|...|++..+.. +.+..++..+..++.+.|+.++| ...+++|
T Consensus       228 ~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~  291 (336)
T 1p5q_A          228 N-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANM  291 (336)
T ss_dssp             T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2 56666677777777777777777777766652 22455666666677777777666 3344443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.94  E-value=5.5e-08  Score=63.03  Aligned_cols=123  Identities=11%  Similarity=-0.090  Sum_probs=93.4

Q ss_pred             hhHHHHHhhhhhhhHHHHHHcCCCc-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChh
Q 045498           14 VYGIRINGMCKIREIDSAIKKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF   92 (207)
Q Consensus        14 ~~~~ll~~~~~~g~~~~a~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~   92 (207)
                      ++..+.+.+...+.+++++.  +.| +...+..+-..+.+.|++++|+..|++..... |.+...|..+-.++...|+++
T Consensus        11 ~~~~l~~~~~~~~~l~~al~--l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~   87 (151)
T 3gyz_A           11 ISTAVIDAINSGATLKDINA--IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQ   87 (151)
T ss_dssp             HHHHHHHHHHTSCCTGGGCC--SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHCCCCHHHHhC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHH
Confidence            34444554444444444432  233 45667778888889999999999999988775 556778888888999999999


Q ss_pred             hHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC
Q 045498           93 SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG  140 (207)
Q Consensus        93 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g  140 (207)
                      +|...|++..+.... +...|..+..+|.+.|++++|.+.|++..+..
T Consensus        88 ~Ai~~~~~al~l~P~-~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A           88 QAADLYAVAFALGKN-DYTPVFHTGQCQLRLKAPLKAKECFELVIQHS  134 (151)
T ss_dssp             HHHHHHHHHHHHSSS-CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            999999998877533 56788888889999999999999999888863

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.93  E-value=7e-08  Score=70.86  Aligned_cols=132  Identities=14%  Similarity=-0.030  Sum_probs=111.7

Q ss_pred             cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc--------------hhhHHHHHhhHhhhcChhhHHHHHHHHHhC
Q 045498           39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAE--------------LVTYNPLIHDNWEKQGRFSAMALLQTLERD  104 (207)
Q Consensus        39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~  104 (207)
                      +...+..+-..+.+.|++++|+..|++..+......              ..+|..+-.++.+.|++++|...+++..+.
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            456788889999999999999999999987642221              478889999999999999999999999887


Q ss_pred             CCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 045498          105 KYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEA-DKLLVQMK  172 (207)
Q Consensus       105 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a-~~~~~~m~  172 (207)
                      . +.+...+..+..+|...|++++|...|++..+.... +...+..+..++.+.|+.+++ ...|+.|.
T Consensus       226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5 347889999999999999999999999999987543 677888999999999999988 44666664

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.92  E-value=1.4e-07  Score=67.72  Aligned_cols=158  Identities=13%  Similarity=0.041  Sum_probs=116.9

Q ss_pred             HHHHHhhhhhhhHHHHH--------HcCCCccH----HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-cc----hhhH
Q 045498           16 GIRINGMCKIREIDSAI--------KKGICLDV----FVYSSLINGLCTFNRLKEAVELFDKMVAQGIT-AE----LVTY   78 (207)
Q Consensus        16 ~~ll~~~~~~g~~~~a~--------~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~   78 (207)
                      ...+..+...|++++|.        .....|+.    ..+..+...+...+++++|+..|++..+.... ++    ..++
T Consensus        79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~  158 (293)
T 3u3w_A           79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE  158 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence            33467788899999988        11222332    23445667777788999999999999874322 22    2368


Q ss_pred             HHHHhhHhhhcChhhHHHHHHHHHhC-----CCCc-cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCCCC-hhh
Q 045498           79 NPLIHDNWEKQGRFSAMALLQTLERD-----KYEL-NIEVYSLVIDGLCRVGRWEEARKKLDQLSEK----GLVPG-VVT  147 (207)
Q Consensus        79 ~~ll~~~~~~~~~~~a~~~~~~m~~~-----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~~~-~~~  147 (207)
                      +.+..+|...|++++|...+++..+.     +..+ ...++..+...|.+.|++++|.+.+++..+.    +..+. ..+
T Consensus       159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~  238 (293)
T 3u3w_A          159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL  238 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence            88999999999999999999998731     2222 2458889999999999999999999877643    22222 568


Q ss_pred             HHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 045498          148 YNILINGLCKKGM-IMEADKLLVQMKE  173 (207)
Q Consensus       148 ~~~li~~~~~~~~-~~~a~~~~~~m~~  173 (207)
                      |..+..+|.+.|+ +++|...+++...
T Consensus       239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          239 YYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            8889999999995 6999999988764

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.89  E-value=2.9e-08  Score=64.08  Aligned_cols=99  Identities=13%  Similarity=0.034  Sum_probs=64.4

Q ss_pred             chhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 045498           74 ELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN  153 (207)
Q Consensus        74 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~  153 (207)
                      +...+..+-..+...|++++|...|++..... +.+...|..+..++.+.|++++|...|++..+.... +...+..+..
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~   97 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE   97 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence            33455555666666777777777777666554 235566666666777777777777777776665432 4556666677


Q ss_pred             HHHhcCCHHHHHHHHHHHHHc
Q 045498          154 GLCKKGMIMEADKLLVQMKEK  174 (207)
Q Consensus       154 ~~~~~~~~~~a~~~~~~m~~~  174 (207)
                      +|...|++++|...|+...+.
T Consensus        98 ~~~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           98 CLLQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHH
Confidence            777777777777777766654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.89  E-value=5.2e-08  Score=65.71  Aligned_cols=152  Identities=11%  Similarity=-0.047  Sum_probs=111.0

Q ss_pred             hhhhhHHHHHH-----cCCC-ccHHhHHHHHHHHHhcCChhHHHHHHHHHHh----CCCC-cchhhHHHHHhhHhhhcCh
Q 045498           23 CKIREIDSAIK-----KGIC-LDVFVYSSLINGLCTFNRLKEAVELFDKMVA----QGIT-AELVTYNPLIHDNWEKQGR   91 (207)
Q Consensus        23 ~~~g~~~~a~~-----~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~-~~~~~~~~ll~~~~~~~~~   91 (207)
                      ...|++++|..     .+.+ ....++..+...+...|++++|...+++...    .+.. ....++..+-..+...|++
T Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            35677777764     3332 4567889999999999999999999998865    2222 2345678888899999999


Q ss_pred             hhHHHHHHHHHhC----CCC--ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCC-CChhhHHHHHHHHHhcCC
Q 045498           92 FSAMALLQTLERD----KYE--LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK----GLV-PGVVTYNILINGLCKKGM  160 (207)
Q Consensus        92 ~~a~~~~~~m~~~----~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~~~~~~~  160 (207)
                      ++|...+++..+.    +..  .....+..+...+...|++++|...+++..+.    +.. ....++..+...+...|+
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  162 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN  162 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence            9999999886544    212  23456788888999999999999999887643    211 112346788889999999


Q ss_pred             HHHHHHHHHHHHHc
Q 045498          161 IMEADKLLVQMKEK  174 (207)
Q Consensus       161 ~~~a~~~~~~m~~~  174 (207)
                      +++|...+++..+.
T Consensus       163 ~~~A~~~~~~al~~  176 (203)
T 3gw4_A          163 LLEAQQHWLRARDI  176 (203)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999887653

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.89  E-value=1.7e-07  Score=58.75  Aligned_cols=113  Identities=12%  Similarity=0.011  Sum_probs=91.4

Q ss_pred             CCcc-HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHH
Q 045498           36 ICLD-VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS  114 (207)
Q Consensus        36 ~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~  114 (207)
                      +.|+ ...+...-..+.+.|++++|++.|++..+.. +.+..+|..+-.++...|++++|...+++..+.+ +.+...|.
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~   85 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYI   85 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHH
Confidence            3443 4567888889999999999999999988775 5577888889999999999999999999988875 33678899


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 045498          115 LVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL  151 (207)
Q Consensus       115 ~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l  151 (207)
                      .+..++...|++++|.+.|++..+..+. +......+
T Consensus        86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l  121 (126)
T 4gco_A           86 RKAACLVAMREWSKAQRAYEDALQVDPS-NEEAREGV  121 (126)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCcC-CHHHHHHH
Confidence            9999999999999999999999887432 34444433

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.89  E-value=2.5e-08  Score=66.12  Aligned_cols=120  Identities=11%  Similarity=0.029  Sum_probs=97.5

Q ss_pred             hHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH-HHhcCCH-
Q 045498           84 DNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING-LCKKGMI-  161 (207)
Q Consensus        84 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~-~~~~~~~-  161 (207)
                      .+...|++++|...+++..+.. +.+...+..+...|...|++++|...+++..+.... +...+..+..+ +...|++ 
T Consensus        19 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~   96 (177)
T 2e2e_A           19 QFASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHM   96 (177)
T ss_dssp             CCC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCC
T ss_pred             hhhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcc
Confidence            3456788999999999987765 347788999999999999999999999999887533 67778888888 7889998 


Q ss_pred             -HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          162 -MEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       162 -~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                       ++|...++...+.. +.+...+..+...+...|++++|...+++.
T Consensus        97 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  141 (177)
T 2e2e_A           97 TAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKV  141 (177)
T ss_dssp             CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence             99999999998873 335778889999999999999999999875

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.88  E-value=2.3e-08  Score=64.59  Aligned_cols=106  Identities=13%  Similarity=-0.054  Sum_probs=87.9

Q ss_pred             HHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 045498           98 LQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF  177 (207)
Q Consensus        98 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  177 (207)
                      +++..+.. +.+...+..+...+.+.|++++|...|+........ +...|..+..++...|++++|...|++..... +
T Consensus        10 ~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p   86 (148)
T 2vgx_A           10 IAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-I   86 (148)
T ss_dssp             HHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred             HHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C
Confidence            44444432 225567778888999999999999999999887543 78888999999999999999999999998863 3


Q ss_pred             CChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          178 PDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       178 p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      .+...+..+..++...|++++|.+.|++.
T Consensus        87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  115 (148)
T 2vgx_A           87 XEPRFPFHAAECLLQXGELAEAESGLFLA  115 (148)
T ss_dssp             TCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            36688899999999999999999999864

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.85  E-value=4.4e-07  Score=55.23  Aligned_cols=98  Identities=15%  Similarity=0.038  Sum_probs=51.6

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHH
Q 045498           40 VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG  119 (207)
Q Consensus        40 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  119 (207)
                      +..+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~   81 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA   81 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence            3445555555566666666666666655442 2244445555555555555555555555554443 1234445555555


Q ss_pred             HhcCCCHHHHHHHHHHHHhC
Q 045498          120 LCRVGRWEEARKKLDQLSEK  139 (207)
Q Consensus       120 ~~~~~~~~~a~~~~~~~~~~  139 (207)
                      +...|++++|.+.++...+.
T Consensus        82 ~~~~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           82 LEFLNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             HHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHhhHHHHHHHHHHHHHc
Confidence            55555555555555555444

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.83  E-value=7.7e-07  Score=60.86  Aligned_cols=161  Identities=15%  Similarity=-0.063  Sum_probs=125.6

Q ss_pred             cchhhhHHHHHhhhhhhhHHHHH---HcC-CCccHHhHHHHHHHHHhcC----ChhHHHHHHHHHHhCCCCcchhhHHHH
Q 045498           10 GNFHVYGIRINGMCKIREIDSAI---KKG-ICLDVFVYSSLINGLCTFN----RLKEAVELFDKMVAQGITAELVTYNPL   81 (207)
Q Consensus        10 p~~~~~~~ll~~~~~~g~~~~a~---~~~-~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~m~~~~~~~~~~~~~~l   81 (207)
                      -++..+..+-..|...+++++|.   ... -.-++..+..|-..|.. +    ++++|+..|++..+.|   +...+..|
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~L   91 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVL   91 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence            35667788888888999999998   111 12256777888888877 6    8999999999998876   45566677


Q ss_pred             HhhHhh----hcChhhHHHHHHHHHhCCCC-ccHHHHHHHHHHHhc----CCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 045498           82 IHDNWE----KQGRFSAMALLQTLERDKYE-LNIEVYSLVIDGLCR----VGRWEEARKKLDQLSEKGLVPGVVTYNILI  152 (207)
Q Consensus        82 l~~~~~----~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li  152 (207)
                      -..+..    .+++++|...|++..+.+.. .+...+..+-..|..    .+++++|...|++..+.  ..+...+..|-
T Consensus        92 g~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg  169 (212)
T 3rjv_A           92 ARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAG  169 (212)
T ss_dssp             HHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHH
T ss_pred             HHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHH
Confidence            777766    78999999999999887642 126678888888887    88999999999999887  23555777787


Q ss_pred             HHHHhc-C-----CHHHHHHHHHHHHHcCC
Q 045498          153 NGLCKK-G-----MIMEADKLLVQMKEKGC  176 (207)
Q Consensus       153 ~~~~~~-~-----~~~~a~~~~~~m~~~~~  176 (207)
                      ..|... |     ++++|...|+...+.|.
T Consensus       170 ~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          170 MMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            887653 3     89999999999988864

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.81  E-value=1.1e-07  Score=67.97  Aligned_cols=90  Identities=13%  Similarity=-0.043  Sum_probs=46.6

Q ss_pred             hhhHHHHHhhhhhhhHHHHH-----HcC-CCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHh
Q 045498           13 HVYGIRINGMCKIREIDSAI-----KKG-ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNW   86 (207)
Q Consensus        13 ~~~~~ll~~~~~~g~~~~a~-----~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~   86 (207)
                      ..+..+...+.+.|++++|+     ... .+.+...|..+..++.+.|++++|+..+++..+.. +.+...+..+..++.
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~   83 (281)
T 2c2l_A            5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL   83 (281)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            44445555555555555555     111 12244555555555555566666666555555442 233445555555555


Q ss_pred             hhcChhhHHHHHHHHHh
Q 045498           87 EKQGRFSAMALLQTLER  103 (207)
Q Consensus        87 ~~~~~~~a~~~~~~m~~  103 (207)
                      ..|++++|...+++..+
T Consensus        84 ~~g~~~~A~~~~~~al~  100 (281)
T 2c2l_A           84 EMESYDEAIANLQRAYS  100 (281)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            55566665555555443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.81  E-value=3.2e-07  Score=57.14  Aligned_cols=95  Identities=13%  Similarity=0.018  Sum_probs=44.0

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHh
Q 045498           42 VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC  121 (207)
Q Consensus        42 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  121 (207)
                      .|..+-..+.+.|++++|+..|++..+.. +.+...|..+-.++...|++++|...+++..+.. +.+...+..+..++.
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~   83 (126)
T 3upv_A            6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence            34444445555555555555555554432 2233444444444444455555554444444432 113344444444444


Q ss_pred             cCCCHHHHHHHHHHHHh
Q 045498          122 RVGRWEEARKKLDQLSE  138 (207)
Q Consensus       122 ~~~~~~~a~~~~~~~~~  138 (207)
                      ..|++++|.+.+++..+
T Consensus        84 ~~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           84 AVKEYASALETLDAART  100 (126)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHHH
Confidence            44444444444444443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.79  E-value=2.6e-08  Score=67.33  Aligned_cols=87  Identities=10%  Similarity=-0.057  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 045498          111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF  190 (207)
Q Consensus       111 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~  190 (207)
                      ..+..+..+|.+.|++++|...++...+... .+...+..+..+|...|++++|...|+...+.. +-+..++..+..++
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~  166 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV  166 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence            3445555555555555555555555555422 144455555555555555655555555555441 12334444444454


Q ss_pred             HhcCchhHH
Q 045498          191 LVKNETDRA  199 (207)
Q Consensus       191 ~~~~~~~~a  199 (207)
                      ...++.+++
T Consensus       167 ~~~~~~~~~  175 (198)
T 2fbn_A          167 NKLKEARKK  175 (198)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHHHH
Confidence            444444433

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.79  E-value=2e-07  Score=56.28  Aligned_cols=97  Identities=15%  Similarity=0.035  Sum_probs=45.2

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCc--cHHHHHHHHH
Q 045498           41 FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYEL--NIEVYSLVID  118 (207)
Q Consensus        41 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~  118 (207)
                      ..+..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. +.  +...+..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~   84 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD   84 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence            334444445555555555555555554432 2233344444444445555555555555444432 11  2344444444


Q ss_pred             HHhcC-CCHHHHHHHHHHHHhC
Q 045498          119 GLCRV-GRWEEARKKLDQLSEK  139 (207)
Q Consensus       119 ~~~~~-~~~~~a~~~~~~~~~~  139 (207)
                      ++.+. |++++|.+.++.....
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           85 ALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             HHTTCSSCSHHHHHHHHHHGGG
T ss_pred             HHHHHhCCHHHHHHHHHHHhhc
Confidence            44455 5555555555444443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.79  E-value=4.8e-07  Score=56.32  Aligned_cols=98  Identities=14%  Similarity=0.003  Sum_probs=84.7

Q ss_pred             hhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 045498           75 LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING  154 (207)
Q Consensus        75 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~  154 (207)
                      ...+..+-..+...|++++|...|++..+.. +.+...|..+..++.+.|++++|...+++..+.... +...+..+..+
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~   81 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence            4466777788899999999999999988775 336788999999999999999999999999887543 67788999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHc
Q 045498          155 LCKKGMIMEADKLLVQMKEK  174 (207)
Q Consensus       155 ~~~~~~~~~a~~~~~~m~~~  174 (207)
                      +...|++++|...|++..+.
T Consensus        82 ~~~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           82 QIAVKEYASALETLDAARTK  101 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHHHHHHh
Confidence            99999999999999998875

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.78  E-value=2.4e-07  Score=59.14  Aligned_cols=99  Identities=10%  Similarity=-0.040  Sum_probs=85.1

Q ss_pred             chhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 045498           74 ELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN  153 (207)
Q Consensus        74 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~  153 (207)
                      +...+..+-..+...|++++|...|++..... +.+...|..+..++.+.|++++|...++...+.... +...+..+..
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~   94 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAE   94 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence            34556667778899999999999999988875 347788889999999999999999999999987544 6778888999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHc
Q 045498          154 GLCKKGMIMEADKLLVQMKEK  174 (207)
Q Consensus       154 ~~~~~~~~~~a~~~~~~m~~~  174 (207)
                      ++...|++++|...|+...+.
T Consensus        95 ~~~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           95 CHLQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh
Confidence            999999999999999998875

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.77  E-value=9.2e-07  Score=53.79  Aligned_cols=110  Identities=9%  Similarity=-0.067  Sum_probs=88.8

Q ss_pred             chhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 045498           74 ELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILIN  153 (207)
Q Consensus        74 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~  153 (207)
                      +...+..+...+...|++++|...+++..+.. +.+...+..+...+.+.|++++|...+++..+.... +...+..+..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~   80 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAA   80 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence            34567778888899999999999999988764 336778888999999999999999999998887533 6778889999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 045498          154 GLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV  186 (207)
Q Consensus       154 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l  186 (207)
                      ++...|++++|...++...+.+ +.+...+..+
T Consensus        81 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l  112 (118)
T 1elw_A           81 ALEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGL  112 (118)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence            9999999999999999988763 2234444433

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.77  E-value=1.7e-07  Score=58.30  Aligned_cols=97  Identities=11%  Similarity=0.079  Sum_probs=46.9

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCC--cc----HHHHH
Q 045498           41 FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYE--LN----IEVYS  114 (207)
Q Consensus        41 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~----~~~~~  114 (207)
                      ..|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+....  ++    ..++.
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            345555555555666666666666555442 233444455555555555555555555554433210  01    33444


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHh
Q 045498          115 LVIDGLCRVGRWEEARKKLDQLSE  138 (207)
Q Consensus       115 ~li~~~~~~~~~~~a~~~~~~~~~  138 (207)
                      .+..++.+.|++++|.+.++...+
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~  107 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLA  107 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHH
Confidence            444444444444444444444444

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.77  E-value=2.3e-07  Score=57.64  Aligned_cols=117  Identities=12%  Similarity=0.079  Sum_probs=94.6

Q ss_pred             hhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC--CC----hhhH
Q 045498           75 LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV--PG----VVTY  148 (207)
Q Consensus        75 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~--~~----~~~~  148 (207)
                      ...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++...+....  ++    ..++
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            3567778888999999999999999988765 346788889999999999999999999988776321  12    6788


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 045498          149 NILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN  194 (207)
Q Consensus       149 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~  194 (207)
                      ..+...+.+.|++++|...|+...+.  .|+......+.......+
T Consensus        83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~  126 (131)
T 1elr_A           83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAEKILK  126 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHH
Confidence            88999999999999999999999886  457766666666555443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.76  E-value=4e-07  Score=57.34  Aligned_cols=118  Identities=10%  Similarity=-0.160  Sum_probs=94.8

Q ss_pred             CcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 045498           72 TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNIL  151 (207)
Q Consensus        72 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l  151 (207)
                      +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++...+.... +...+..+
T Consensus         6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l   83 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFL   83 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHH
Confidence            3456788888899999999999999999988775 336788999999999999999999999999887543 67889999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcC----CCCChhhHHHHHHHHH
Q 045498          152 INGLCKKGMIMEADKLLVQMKEKG----CFPDSTSFNTVIQGFL  191 (207)
Q Consensus       152 i~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~~~~~l~~~~~  191 (207)
                      ..++...|++++|...|+...+..    ...+......+..+..
T Consensus        84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~  127 (137)
T 3q49_B           84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK  127 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999987652    2224444554444433

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.76  E-value=3.2e-07  Score=58.56  Aligned_cols=99  Identities=7%  Similarity=-0.108  Sum_probs=84.2

Q ss_pred             cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHH
Q 045498           39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID  118 (207)
Q Consensus        39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  118 (207)
                      +...+..+...+.+.|++++|+..|++..... +.+...|..+-.++...|++++|...+++..+... .+...+..+..
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~   94 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAE   94 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHH
Confidence            34556667778889999999999999998875 45777888888999999999999999999888753 36678888899


Q ss_pred             HHhcCCCHHHHHHHHHHHHhC
Q 045498          119 GLCRVGRWEEARKKLDQLSEK  139 (207)
Q Consensus       119 ~~~~~~~~~~a~~~~~~~~~~  139 (207)
                      ++...|++++|.+.|+...+.
T Consensus        95 ~~~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           95 CHLQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh
Confidence            999999999999999988876

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.75  E-value=2e-06  Score=65.74  Aligned_cols=150  Identities=15%  Similarity=0.036  Sum_probs=66.7

Q ss_pred             hHHHHHHHHHhcC---ChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhh----cChhhHHHHHHHHHhCCCCccHHHHH
Q 045498           42 VYSSLINGLCTFN---RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEK----QGRFSAMALLQTLERDKYELNIEVYS  114 (207)
Q Consensus        42 ~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~m~~~~~~~~~~~~~  114 (207)
                      .+..|-..|.+.|   ++++|+..|++..+.| +++...+..+-..|...    ++.++|...|++.. .|   +...+.
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~  252 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWV  252 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHH
Confidence            4555555555555   5555555555555554 22222223333333222    35555555555544 22   222333


Q ss_pred             HHHHH-H--hcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCCCChhhHHHH
Q 045498          115 LVIDG-L--CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG-----MIMEADKLLVQMKEKGCFPDSTSFNTV  186 (207)
Q Consensus       115 ~li~~-~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~~~~p~~~~~~~l  186 (207)
                      .+-.. +  ...+++++|.+.|++..+.|   +...+..|-..|. .|     ++++|...|+...    ..+...+..|
T Consensus       253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~L  324 (452)
T 3e4b_A          253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYL  324 (452)
T ss_dssp             HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHH
T ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHH
Confidence            33322 2  23455555555555555443   3344444444443 22     5555555554443    1233444444


Q ss_pred             HHHHHh----cCchhHHHHHHH
Q 045498          187 IQGFLV----KNETDRASSFLK  204 (207)
Q Consensus       187 ~~~~~~----~~~~~~a~~~~~  204 (207)
                      ...|..    ..+.++|.++|+
T Consensus       325 g~~y~~G~g~~~d~~~A~~~~~  346 (452)
T 3e4b_A          325 GQIYRRGYLGKVYPQKALDHLL  346 (452)
T ss_dssp             HHHHHTTTTSSCCHHHHHHHHH
T ss_pred             HHHHHCCCCCCcCHHHHHHHHH
Confidence            444433    224444554444

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.75  E-value=2.8e-07  Score=66.17  Aligned_cols=159  Identities=13%  Similarity=0.030  Sum_probs=114.1

Q ss_pred             hHHHHHhhhhhhhHHHHH-------HcCCC-cc----HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC---cc--hhh
Q 045498           15 YGIRINGMCKIREIDSAI-------KKGIC-LD----VFVYSSLINGLCTFNRLKEAVELFDKMVAQGIT---AE--LVT   77 (207)
Q Consensus        15 ~~~ll~~~~~~g~~~~a~-------~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~---~~--~~~   77 (207)
                      +...+..+...|++++|.       ..... ++    ...+..+...+...|++++|+..+++..+....   +.  ..+
T Consensus        78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  157 (293)
T 2qfc_A           78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI  157 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence            345566777888888887       11111 11    123444566677889999999999998753211   11  347


Q ss_pred             HHHHHhhHhhhcChhhHHHHHHHHHhC----CCCc--cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC----CCC-Chh
Q 045498           78 YNPLIHDNWEKQGRFSAMALLQTLERD----KYEL--NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG----LVP-GVV  146 (207)
Q Consensus        78 ~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g----~~~-~~~  146 (207)
                      ++.+-..|...|++++|...+++..+.    +..+  ...++..+...|.+.|++++|.+.+++..+..    ... -..
T Consensus       158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~  237 (293)
T 2qfc_A          158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ  237 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            888999999999999999999987622    1111  22688899999999999999999999876531    111 156


Q ss_pred             hHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 045498          147 TYNILINGLCKKGMIMEA-DKLLVQMKE  173 (207)
Q Consensus       147 ~~~~li~~~~~~~~~~~a-~~~~~~m~~  173 (207)
                      +|..+..+|.+.|++++| ...++....
T Consensus       238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          238 LYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            788899999999999999 777776653

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.74  E-value=1.4e-06  Score=54.80  Aligned_cols=101  Identities=12%  Similarity=0.011  Sum_probs=88.1

Q ss_pred             CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHH
Q 045498           37 CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV  116 (207)
Q Consensus        37 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  116 (207)
                      +.++..|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+
T Consensus         6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l   83 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL   83 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence            3467888999999999999999999999998875 4567888999999999999999999999988875 3367889999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHhC
Q 045498          117 IDGLCRVGRWEEARKKLDQLSEK  139 (207)
Q Consensus       117 i~~~~~~~~~~~a~~~~~~~~~~  139 (207)
                      ..++...|++++|...+++..+.
T Consensus        84 ~~~~~~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           84 GQCQLEMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHH
Confidence            99999999999999999988765

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.73  E-value=3.4e-07  Score=59.84  Aligned_cols=100  Identities=11%  Similarity=-0.081  Sum_probs=88.2

Q ss_pred             cchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 045498           73 AELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI  152 (207)
Q Consensus        73 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li  152 (207)
                      .+...+..+-..+...|++++|...|++..+.. +-+...|..+..+|.+.|++++|...+++..+.... +...|..+.
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg   86 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLG   86 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence            355678888899999999999999999988875 337888999999999999999999999999987544 688899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHc
Q 045498          153 NGLCKKGMIMEADKLLVQMKEK  174 (207)
Q Consensus       153 ~~~~~~~~~~~a~~~~~~m~~~  174 (207)
                      .+|.+.|++++|...|++..+.
T Consensus        87 ~~~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           87 LARFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHh
Confidence            9999999999999999998876

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.73  E-value=5.1e-07  Score=60.92  Aligned_cols=133  Identities=14%  Similarity=-0.008  Sum_probs=100.3

Q ss_pred             cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcch----------------hhHHHHHhhHhhhcChhhHHHHHHHHH
Q 045498           39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL----------------VTYNPLIHDNWEKQGRFSAMALLQTLE  102 (207)
Q Consensus        39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----------------~~~~~ll~~~~~~~~~~~a~~~~~~m~  102 (207)
                      ....+..+...+.+.|++++|+..|++..+... .+.                .++..+-.++...|++++|...+++..
T Consensus        37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al  115 (198)
T 2fbn_A           37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFI-HTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL  115 (198)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT-TCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-cccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            345677788889999999999999999987531 122                678888889999999999999999988


Q ss_pred             hCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH-HHHHHHHHc
Q 045498          103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD-KLLVQMKEK  174 (207)
Q Consensus       103 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~-~~~~~m~~~  174 (207)
                      +.. +.+...+..+..+|...|++++|.+.|++..+.... +...+..+..++...++.+++. ..+..+...
T Consensus       116 ~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~  186 (198)
T 2fbn_A          116 KID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKDKLTFGGMFDK  186 (198)
T ss_dssp             HHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC------------
T ss_pred             HhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            875 346788999999999999999999999999887433 5677778888887777777666 445555443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.73  E-value=2e-07  Score=56.26  Aligned_cols=100  Identities=12%  Similarity=0.008  Sum_probs=71.5

Q ss_pred             chhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC-CChhhHHHHH
Q 045498           74 ELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV-PGVVTYNILI  152 (207)
Q Consensus        74 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li  152 (207)
                      +...+..+...+...|++++|...+++..+.. +.+...+..+...+.+.|++++|.+.+++..+.... .+...+..+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~   83 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA   83 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence            44566677777777888888888888776654 235667777777777888888888888777765321 0466677777


Q ss_pred             HHHHhc-CCHHHHHHHHHHHHHc
Q 045498          153 NGLCKK-GMIMEADKLLVQMKEK  174 (207)
Q Consensus       153 ~~~~~~-~~~~~a~~~~~~m~~~  174 (207)
                      .++.+. |++++|.+.++...+.
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           84 DALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred             HHHHHHhCCHHHHHHHHHHHhhc
Confidence            777788 8888888888877765

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.71  E-value=8.6e-07  Score=55.49  Aligned_cols=60  Identities=13%  Similarity=0.130  Sum_probs=31.0

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHH
Q 045498           42 VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLE  102 (207)
Q Consensus        42 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~  102 (207)
                      .+..+-..+.+.|++++|+..|++..+.. |-+..+|..+-.++...|++++|+..+++..
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al   69 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV   69 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence            34445555555555555555555555442 2334445555555555555555555555443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.70  E-value=1.4e-06  Score=56.89  Aligned_cols=101  Identities=9%  Similarity=-0.023  Sum_probs=89.5

Q ss_pred             ccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHH
Q 045498           38 LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI  117 (207)
Q Consensus        38 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li  117 (207)
                      .+...+..+...+.+.|++++|+..|++..+.. +.+...|..+-.++...|++++|...+++..+.. +-+...|..+.
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg   86 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG   86 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            356778889999999999999999999998875 4477889999999999999999999999998875 33688899999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHhCC
Q 045498          118 DGLCRVGRWEEARKKLDQLSEKG  140 (207)
Q Consensus       118 ~~~~~~~~~~~a~~~~~~~~~~g  140 (207)
                      .+|.+.|++++|.+.|++..+..
T Consensus        87 ~~~~~~g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           87 LARFDMADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHhC
Confidence            99999999999999999988764

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.70  E-value=4e-06  Score=60.61  Aligned_cols=190  Identities=7%  Similarity=-0.005  Sum_probs=128.4

Q ss_pred             hhHHHHHhhhhhh--hHHHHH------HcCCCccHHhHHHHHHHH----Hhc---CChhHHHHHHHHHHhCCCCcchhhH
Q 045498           14 VYGIRINGMCKIR--EIDSAI------KKGICLDVFVYSSLINGL----CTF---NRLKEAVELFDKMVAQGITAELVTY   78 (207)
Q Consensus        14 ~~~~ll~~~~~~g--~~~~a~------~~~~~~~~~~~~~ll~~~----~~~---~~~~~a~~~~~~m~~~~~~~~~~~~   78 (207)
                      .|+.--..+...|  ++++++      -...+-+..+|+.--..+    ...   +++++++.+++++.+.. +-+..+|
T Consensus        69 aWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW  147 (306)
T 3dra_A           69 IWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVW  147 (306)
T ss_dssp             HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             HHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence            3444444445555  666666      111222444555544444    344   67888888888887765 4566777


Q ss_pred             HHHHhhHhhhcChh--hHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhCCCCCChhhHHH
Q 045498           79 NPLIHDNWEKQGRF--SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR------WEEARKKLDQLSEKGLVPGVVTYNI  150 (207)
Q Consensus        79 ~~ll~~~~~~~~~~--~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~------~~~a~~~~~~~~~~g~~~~~~~~~~  150 (207)
                      +---..+.+.+.++  +++..++++.+..+. |-..|+-....+.+.+.      ++++.+.++.+....+. |...|+-
T Consensus       148 ~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y  225 (306)
T 3dra_A          148 SYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNY  225 (306)
T ss_dssp             HHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHH
T ss_pred             HHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHH
Confidence            77777777777777  888888888877644 66777766666666666      78888888888877655 7778888


Q ss_pred             HHHHHHhcCCHH-HHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          151 LINGLCKKGMIM-EADKLLVQMKEKG--CFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       151 li~~~~~~~~~~-~a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      +-..+.+.|+.. .+..+...+.+.+  -..+...+..+...+.+.|+.++|.++++.+
T Consensus       226 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l  284 (306)
T 3dra_A          226 LLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL  284 (306)
T ss_dssp             HHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence            777777777643 3445555554432  1346788888999999999999999998864

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.68  E-value=7.5e-07  Score=55.77  Aligned_cols=108  Identities=13%  Similarity=0.059  Sum_probs=84.9

Q ss_pred             hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC--CC----hhhHH
Q 045498           76 VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV--PG----VVTYN  149 (207)
Q Consensus        76 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~--~~----~~~~~  149 (207)
                      ..+..+-..+.+.|++++|+..|++..+.. +-+...|..+..+|.+.|++++|.+.+++..+....  ++    ..+|.
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            456778888999999999999999988775 336788999999999999999999999988765221  11    23677


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 045498          150 ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV  186 (207)
Q Consensus       150 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l  186 (207)
                      .+-.++...|++++|.+.|++..+.  .||+.+...|
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l  122 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV  122 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence            7788888999999999999988775  5676554433

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.67  E-value=2.2e-06  Score=54.50  Aligned_cols=97  Identities=12%  Similarity=0.024  Sum_probs=45.7

Q ss_pred             cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc----hhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHH
Q 045498           39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAE----LVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYS  114 (207)
Q Consensus        39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~  114 (207)
                      +...+..+...+.+.|++++|...|++..+..  |+    ...+..+..++...|++++|...+++..+.. +.+...+.
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  103 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY  103 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence            34455555555666666666666666655542  22    2334444444444444444444444444332 11333444


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHh
Q 045498          115 LVIDGLCRVGRWEEARKKLDQLSE  138 (207)
Q Consensus       115 ~li~~~~~~~~~~~a~~~~~~~~~  138 (207)
                      .+..++...|++++|.+.+++..+
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~  127 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVS  127 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH
Confidence            444444444444444444444443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.66  E-value=2.3e-05  Score=59.81  Aligned_cols=181  Identities=15%  Similarity=-0.002  Sum_probs=132.4

Q ss_pred             cchhhhHHHHHhhhhhh---hHHHHH------HcCCCccHHhHHHHHHHHHhc----CChhHHHHHHHHHHhCCCCcchh
Q 045498           10 GNFHVYGIRINGMCKIR---EIDSAI------KKGICLDVFVYSSLINGLCTF----NRLKEAVELFDKMVAQGITAELV   76 (207)
Q Consensus        10 p~~~~~~~ll~~~~~~g---~~~~a~------~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~m~~~~~~~~~~   76 (207)
                      .++..+..+-..|.+.|   +.++|+      ...-.++...+..+-..|...    +++++|+..|++.. .|   +..
T Consensus       174 ~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~  249 (452)
T 3e4b_A          174 TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPA  249 (452)
T ss_dssp             TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STH
T ss_pred             CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHH
Confidence            34447777888888888   888877      223344555556677777655    79999999999987 44   444


Q ss_pred             hHHHHHhh-H--hhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHhCCCCCChhhH
Q 045498           77 TYNPLIHD-N--WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG-----RWEEARKKLDQLSEKGLVPGVVTY  148 (207)
Q Consensus        77 ~~~~ll~~-~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~~~~~g~~~~~~~~  148 (207)
                      .+..|-.. +  ...++.++|...|++..+.|   +...+..+-..|. .|     ++++|.+.|++.. .|   +...+
T Consensus       250 a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~  321 (452)
T 3e4b_A          250 SWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAAD  321 (452)
T ss_dssp             HHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHH
T ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHH
Confidence            55555554 3  45889999999999998877   5556666666666 44     9999999999887 43   66777


Q ss_pred             HHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCchhHHHHHHHh
Q 045498          149 NILINGLCK----KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV----KNETDRASSFLKK  205 (207)
Q Consensus       149 ~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~  205 (207)
                      ..|-..|..    ..++++|...|+...+.|   +......|...|..    ..+.++|..++++
T Consensus       322 ~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~  383 (452)
T 3e4b_A          322 YYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQL  383 (452)
T ss_dssp             HHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence            778777776    349999999999988876   34556667777764    4578888888875

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.66  E-value=9.6e-08  Score=73.47  Aligned_cols=121  Identities=11%  Similarity=-0.061  Sum_probs=69.7

Q ss_pred             HHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 045498           81 LIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM  160 (207)
Q Consensus        81 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~  160 (207)
                      +-..+.+.|++++|...+++..+.. +.+...+..+..+|.+.|++++|.+.+++..+.... +...+..+..+|.+.|+
T Consensus        12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~   89 (477)
T 1wao_1           12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGK   89 (477)
T ss_dssp             SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence            3344556666666666666665543 224566666666677777777777777766665432 45566666666777777


Q ss_pred             HHHHHHHHHHHHHcCCCCChhhHHHHHHH--HHhcCchhHHHHHHH
Q 045498          161 IMEADKLLVQMKEKGCFPDSTSFNTVIQG--FLVKNETDRASSFLK  204 (207)
Q Consensus       161 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~  204 (207)
                      +++|...|++..+.. +.+...+..+..+  +.+.|++++|.+.++
T Consensus        90 ~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           90 FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            777777777666542 1123344444444  566666766666655

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.65  E-value=3.2e-06  Score=53.69  Aligned_cols=112  Identities=11%  Similarity=-0.060  Sum_probs=90.6

Q ss_pred             cchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCcc----HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhH
Q 045498           73 AELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN----IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY  148 (207)
Q Consensus        73 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~  148 (207)
                      .+...+..+...+...|++++|...+++..+..  |+    ...+..+..++...|++++|.+.++...+.... +...+
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~  102 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKAL  102 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHH
Confidence            345677888889999999999999999988764  44    678888889999999999999999998887433 67788


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHH
Q 045498          149 NILINGLCKKGMIMEADKLLVQMKEKGCFP-DSTSFNTVIQG  189 (207)
Q Consensus       149 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~  189 (207)
                      ..+..++...|++++|...|++..+.  .| +...+..+...
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~  142 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRCVSL--EPKNKVFQEALRNI  142 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHH
Confidence            88999999999999999999999876  34 34444444333

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.64  E-value=6.9e-07  Score=55.44  Aligned_cols=96  Identities=7%  Similarity=-0.178  Sum_probs=71.0

Q ss_pred             hHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 045498           77 TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC  156 (207)
Q Consensus        77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~  156 (207)
                      .+..+...+.+.|++++|...+++..+.. +.+...+..+..++.+.|++++|...+++..+.... +...+..+..++.
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~   96 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHT   96 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence            34455567777888888888888877764 236677777778888888888888888887776433 5667777778888


Q ss_pred             hcCCHHHHHHHHHHHHHc
Q 045498          157 KKGMIMEADKLLVQMKEK  174 (207)
Q Consensus       157 ~~~~~~~a~~~~~~m~~~  174 (207)
                      +.|++++|...+++..+.
T Consensus        97 ~~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           97 NEHNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHHHHHC-
T ss_pred             HcCCHHHHHHHHHHHHHh
Confidence            888888888888877654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.64  E-value=5.4e-07  Score=58.01  Aligned_cols=134  Identities=10%  Similarity=-0.082  Sum_probs=83.4

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-cc----hhhHHHHHhhHhhhcChhhHHHHHHHHHhCC----CCc-c
Q 045498           40 VFVYSSLINGLCTFNRLKEAVELFDKMVAQGIT-AE----LVTYNPLIHDNWEKQGRFSAMALLQTLERDK----YEL-N  109 (207)
Q Consensus        40 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----~~~-~  109 (207)
                      ..++..+...+...|++++|...+++..+.... ++    ..++..+...+...|++++|...+++..+..    ..+ .
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   88 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            345677777888888888888888877643110 11    1356667777777788888877777754331    111 1


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045498          110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEK----GLV-PGVVTYNILINGLCKKGMIMEADKLLVQMKE  173 (207)
Q Consensus       110 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  173 (207)
                      ...+..+...+...|++++|.+.+++..+.    +.. .....+..+...+...|++++|...+++..+
T Consensus        89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            345666667777777777777777665532    111 1133455666667777777777777766554

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.64  E-value=3.6e-06  Score=67.28  Aligned_cols=168  Identities=12%  Similarity=-0.054  Sum_probs=114.8

Q ss_pred             ccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC---------CCc------------chhhHHHHHhhHhhhcChhhHHH
Q 045498           38 LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQG---------ITA------------ELVTYNPLIHDNWEKQGRFSAMA   96 (207)
Q Consensus        38 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---------~~~------------~~~~~~~ll~~~~~~~~~~~a~~   96 (207)
                      .+...|-..+...-+.|++++|.++|+.+.+..         -.|            ...+|-..+....+.++.+.|..
T Consensus       376 ~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~  455 (679)
T 4e6h_A          376 NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRK  455 (679)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHH
Confidence            355556677777778889999999998887531         012            12357777777778888889999


Q ss_pred             HHHHHHhCCCCccHHHHHHHHHHHhcC-CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045498           97 LLQTLERDKYELNIEVYSLVIDGLCRV-GRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG  175 (207)
Q Consensus        97 ~~~~m~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  175 (207)
                      +|.+..+....+....|......-.+. ++.+.|.++|+...+. ..-+...+...+......|+.+.|..+|++.....
T Consensus       456 vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~  534 (679)
T 4e6h_A          456 IFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI  534 (679)
T ss_dssp             HHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence            998887651111223333332222333 4588999999888776 22245566677777778889999999999887763


Q ss_pred             CCC--ChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          176 CFP--DSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       176 ~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      ..+  ....|...++.-.+.|+.+.+.++.+++
T Consensus       535 ~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~  567 (679)
T 4e6h_A          535 SDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRF  567 (679)
T ss_dssp             SSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            211  3356777777778889888888888765

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.63  E-value=2.8e-06  Score=67.91  Aligned_cols=168  Identities=11%  Similarity=-0.020  Sum_probs=126.3

Q ss_pred             ccHHhHHHHHHHHHhcCChhHHH-HHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCC---------C
Q 045498           38 LDVFVYSSLINGLCTFNRLKEAV-ELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKY---------E  107 (207)
Q Consensus        38 ~~~~~~~~ll~~~~~~~~~~~a~-~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---------~  107 (207)
                      -+...|-.....+.+.|+.++|. ++|++.... +|.+...|-..+...-+.|++++|..+|+.......         .
T Consensus       341 ~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~  419 (679)
T 4e6h_A          341 FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDD  419 (679)
T ss_dssp             TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence            35667777777778889999997 999999864 455666677788888889999999999999876410         1


Q ss_pred             c------------cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHc
Q 045498          108 L------------NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK-GMIMEADKLLVQMKEK  174 (207)
Q Consensus       108 ~------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~  174 (207)
                      |            ...+|...+....+.|+.+.|..+|....+.-..+....|...+..-.+. ++++.|.++|+...+.
T Consensus       420 p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~  499 (679)
T 4e6h_A          420 PTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY  499 (679)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred             CcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            3            23467888888888999999999999998761112334444433333444 4589999999999887


Q ss_pred             CCCCChhhHHHHHHHHHhcCchhHHHHHHHhhC
Q 045498          175 GCFPDSTSFNTVIQGFLVKNETDRASSFLKKNM  207 (207)
Q Consensus       175 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~  207 (207)
                       .+-+...+...++.....|+.+.|..+|++.+
T Consensus       500 -~p~~~~~w~~y~~fe~~~~~~~~AR~lferal  531 (679)
T 4e6h_A          500 -FATDGEYINKYLDFLIYVNEESQVKSLFESSI  531 (679)
T ss_dssp             -HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHT
T ss_pred             -CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence             44466667788888888999999999998753

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.61  E-value=3.3e-07  Score=59.06  Aligned_cols=131  Identities=11%  Similarity=-0.032  Sum_probs=100.1

Q ss_pred             hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCC---c--cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC----CCC-Ch
Q 045498           76 VTYNPLIHDNWEKQGRFSAMALLQTLERDKYE---L--NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG----LVP-GV  145 (207)
Q Consensus        76 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~---~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g----~~~-~~  145 (207)
                      .++..+-..+...|++++|...+++..+....   +  ...++..+...+...|++++|.+.+++..+..    ..+ ..
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~   89 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA   89 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            46777888889999999999999887654211   1  12477888899999999999999999876531    111 14


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          146 VTYNILINGLCKKGMIMEADKLLVQMKEK----GCF-PDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       146 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      ..+..+...+...|++++|...+++..+.    +.. ....++..+...+...|++++|.+.+++.
T Consensus        90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  155 (164)
T 3ro3_A           90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH  155 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            56778889999999999999999987653    111 12356788889999999999999999874

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.57  E-value=2.3e-06  Score=60.86  Aligned_cols=139  Identities=9%  Similarity=-0.018  Sum_probs=105.0

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCcc--HHHHHHHHHHH
Q 045498           43 YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN--IEVYSLVIDGL  120 (207)
Q Consensus        43 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~  120 (207)
                      +-.....+...|++++|.++|+.+...+  |+......+-..+.+.+++++|+..|+...+.. .|.  ...+..+-.++
T Consensus       105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al  181 (282)
T 4f3v_A          105 TMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAA  181 (282)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHH
Confidence            3445667788999999999999987754  444355666668999999999999998554432 221  34677888899


Q ss_pred             hcCCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 045498          121 CRVGRWEEARKKLDQLSEKGLVPG--VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTV  186 (207)
Q Consensus       121 ~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l  186 (207)
                      .+.|++++|++.|++.......|.  .........++.+.|+.++|..+|+++...  .|+......|
T Consensus       182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL  247 (282)
T 4f3v_A          182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAAL  247 (282)
T ss_dssp             HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHH
Confidence            999999999999999886433243  346677778889999999999999999987  4554444433

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.57  E-value=2.7e-06  Score=65.07  Aligned_cols=88  Identities=6%  Similarity=-0.111  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 045498          111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF  190 (207)
Q Consensus       111 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~  190 (207)
                      ..|..+..+|.+.|++++|...+++..+.... +...|..+..+|...|++++|...|++..+.. +-+..++..+..++
T Consensus       318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~  395 (457)
T 1kt0_A          318 AAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQ  395 (457)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            44555555555555555555555555554322 44455555555555555555555555555431 11334445555555


Q ss_pred             HhcCchhHHH
Q 045498          191 LVKNETDRAS  200 (207)
Q Consensus       191 ~~~~~~~~a~  200 (207)
                      .+.++.+++.
T Consensus       396 ~~~~~~~~a~  405 (457)
T 1kt0_A          396 KKAKEHNERD  405 (457)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555554443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.55  E-value=3.6e-07  Score=70.30  Aligned_cols=121  Identities=8%  Similarity=-0.009  Sum_probs=95.1

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC
Q 045498           46 LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR  125 (207)
Q Consensus        46 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~  125 (207)
                      +...+.+.|++++|++.|++..+.. +.+..+|..+-.++.+.|++++|...+++..+.. +.+...+..+..+|.+.|+
T Consensus        12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~   89 (477)
T 1wao_1           12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK   89 (477)
T ss_dssp             SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence            3445667899999999999998874 4467889999999999999999999999998875 3367889999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCChhhHHHHHHH--HHhcCCHHHHHHHHH
Q 045498          126 WEEARKKLDQLSEKGLVPGVVTYNILING--LCKKGMIMEADKLLV  169 (207)
Q Consensus       126 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~--~~~~~~~~~a~~~~~  169 (207)
                      +++|.+.+++..+.... +...+..+..+  +.+.|++++|...++
T Consensus        90 ~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           90 FRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999998887433 44455555555  788899999999988

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.55  E-value=2.8e-06  Score=65.00  Aligned_cols=131  Identities=11%  Similarity=-0.040  Sum_probs=105.9

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc--------------hhhHHHHHhhHhhhcChhhHHHHHHHHHhCC
Q 045498           40 VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAE--------------LVTYNPLIHDNWEKQGRFSAMALLQTLERDK  105 (207)
Q Consensus        40 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~  105 (207)
                      ...|..+-..+.+.|++++|+..|++..+......              ..+|..+-.++.+.|++++|+..+++..+..
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  347 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD  347 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            45688888899999999999999999987531111              4788889999999999999999999998875


Q ss_pred             CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 045498          106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK-LLVQMK  172 (207)
Q Consensus       106 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~-~~~~m~  172 (207)
                       +.+...|..+..+|.+.|++++|...|++..+.... +...+..+..++.+.++.+++.+ .+..|.
T Consensus       348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             337888999999999999999999999999987543 56788888899999998887764 455543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.55  E-value=1.8e-06  Score=53.56  Aligned_cols=95  Identities=13%  Similarity=-0.015  Sum_probs=62.2

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhc
Q 045498           43 YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR  122 (207)
Q Consensus        43 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  122 (207)
                      +..+...+.+.|++++|+..|++..+.. +.+...|..+-.++...|++++|...+++..+.... +...+..+..++.+
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~   97 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN   97 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence            4445556667777777777777776653 335566666666777777777777777776665422 45566666677777


Q ss_pred             CCCHHHHHHHHHHHHhC
Q 045498          123 VGRWEEARKKLDQLSEK  139 (207)
Q Consensus       123 ~~~~~~a~~~~~~~~~~  139 (207)
                      .|++++|...+++..+.
T Consensus        98 ~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           98 EHNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHHHHC-
T ss_pred             cCCHHHHHHHHHHHHHh
Confidence            77777777777766654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.54  E-value=8.3e-06  Score=61.45  Aligned_cols=158  Identities=8%  Similarity=-0.086  Sum_probs=97.9

Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCcch----------------hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCC-cc-
Q 045498           48 NGLCTFNRLKEAVELFDKMVAQGITAEL----------------VTYNPLIHDNWEKQGRFSAMALLQTLERDKYE-LN-  109 (207)
Q Consensus        48 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~----------------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~-  109 (207)
                      ..+.+.|++++|++.|.+..+.......                ..+..+...|...|++++|...+......-.. ++ 
T Consensus        12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~   91 (434)
T 4b4t_Q           12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS   91 (434)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence            3456778888888888887764321110                13566777888888888888877765432111 11 


Q ss_pred             --H-HHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----
Q 045498          110 --I-EVYSLVIDGLCRVGRWEEARKKLDQLSEK----GLVPG-VVTYNILINGLCKKGMIMEADKLLVQMKEKGCF----  177 (207)
Q Consensus       110 --~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----  177 (207)
                        . .+.+.+-..+...|+++.+.++++.....    +..+. ..++..+...|...|++++|..+++++...-..    
T Consensus        92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~  171 (434)
T 4b4t_Q           92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK  171 (434)
T ss_dssp             HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence              1 22333333445567788887777765432    22222 446677778888888888888888877643111    


Q ss_pred             C-ChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498          178 P-DSTSFNTVIQGFLVKNETDRASSFLKK  205 (207)
Q Consensus       178 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~  205 (207)
                      + ...++..+++.|...|++++|..++++
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  200 (434)
T 4b4t_Q          172 PSLVDVHLLESKVYHKLRNLAKSKASLTA  200 (434)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            1 234677777888888888888877765

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.52  E-value=4.7e-06  Score=62.00  Aligned_cols=123  Identities=9%  Similarity=-0.059  Sum_probs=88.3

Q ss_pred             HHHHHhhHhhhcChhhHHHHHHHHHhC---------------CCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC
Q 045498           78 YNPLIHDNWEKQGRFSAMALLQTLERD---------------KYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV  142 (207)
Q Consensus        78 ~~~ll~~~~~~~~~~~a~~~~~~m~~~---------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~  142 (207)
                      +..+-..+.+.|++++|...|++..+.               .-+.+...|..+..+|.+.|++++|.+.+++..+....
T Consensus       226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~  305 (370)
T 1ihg_A          226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS  305 (370)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence            334444555555555555555554431               11224567888888999999999999999999887533


Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHH
Q 045498          143 PGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF  202 (207)
Q Consensus       143 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~  202 (207)
                       +...+..+..+|...|++++|...|++..+.. +.+...+..+..++...++.+++.+.
T Consensus       306 -~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          306 -NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             -hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence             67788888999999999999999999988763 23667777788888888887776543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.52  E-value=8.9e-07  Score=54.45  Aligned_cols=86  Identities=12%  Similarity=-0.021  Sum_probs=53.2

Q ss_pred             hcChhhHHHHHHHHHhCC--CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 045498           88 KQGRFSAMALLQTLERDK--YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD  165 (207)
Q Consensus        88 ~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~  165 (207)
                      .|++++|...|++..+.+  -+.+...+..+..+|.+.|++++|.+.+++..+.... +...+..+..++.+.|++++|.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence            456666666666666543  1224456666667777777777777777777666433 4566666677777777777777


Q ss_pred             HHHHHHHHc
Q 045498          166 KLLVQMKEK  174 (207)
Q Consensus       166 ~~~~~m~~~  174 (207)
                      ..+++..+.
T Consensus        82 ~~~~~al~~   90 (117)
T 3k9i_A           82 ELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            777766654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.51  E-value=9.8e-06  Score=50.24  Aligned_cols=90  Identities=12%  Similarity=-0.013  Sum_probs=43.7

Q ss_pred             hHhhhcChhhHHHHHHHHHhCCCCc--cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhc
Q 045498           84 DNWEKQGRFSAMALLQTLERDKYEL--NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG---VVTYNILINGLCKK  158 (207)
Q Consensus        84 ~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~  158 (207)
                      .+...|++++|...+++..+.....  ....+..+..++.+.|++++|...++...+.... +   ...+..+..++.+.
T Consensus        11 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~~~~   89 (129)
T 2xev_A           11 DALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQYGE   89 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHHHT
T ss_pred             HHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHc
Confidence            3444455555555555544432110  0134444455555555555555555555544221 1   33445555555555


Q ss_pred             CCHHHHHHHHHHHHHc
Q 045498          159 GMIMEADKLLVQMKEK  174 (207)
Q Consensus       159 ~~~~~a~~~~~~m~~~  174 (207)
                      |++++|...|+.+.+.
T Consensus        90 g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           90 GKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             TCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            6666666666555544

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.51  E-value=3.7e-06  Score=62.57  Aligned_cols=124  Identities=10%  Similarity=-0.027  Sum_probs=100.6

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhC---------------CCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCC
Q 045498           41 FVYSSLINGLCTFNRLKEAVELFDKMVAQ---------------GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK  105 (207)
Q Consensus        41 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---------------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~  105 (207)
                      ..+..+-..+.+.|++++|+..|++..+.               --+.+..+|..+-.++.+.|++++|...+++..+..
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  303 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID  303 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence            45777888899999999999999998761               112345678888899999999999999999998875


Q ss_pred             CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 045498          106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK  166 (207)
Q Consensus       106 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~  166 (207)
                       +.+...+..+..+|.+.|++++|.+.+++..+.... +...+..+...+...++.+++.+
T Consensus       304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence             336788999999999999999999999999887433 56677777777777777766654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.51  E-value=1.1e-05  Score=50.00  Aligned_cols=96  Identities=13%  Similarity=-0.005  Sum_probs=78.8

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcch---hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCcc---HHHHHHH
Q 045498           43 YSSLINGLCTFNRLKEAVELFDKMVAQGITAEL---VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELN---IEVYSLV  116 (207)
Q Consensus        43 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l  116 (207)
                      +..+...+.+.|++++|...|++..+.. +.+.   ..+..+..++...|++++|...+++..+.... +   ...+..+
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~l   82 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKL   82 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHH
Confidence            3445667889999999999999998764 2233   47777888999999999999999998876432 3   6678888


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHhCC
Q 045498          117 IDGLCRVGRWEEARKKLDQLSEKG  140 (207)
Q Consensus       117 i~~~~~~~~~~~a~~~~~~~~~~g  140 (207)
                      ..++.+.|++++|...++...+..
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~~~  106 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVATQY  106 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC
Confidence            899999999999999999998863

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.45  E-value=2e-05  Score=59.37  Aligned_cols=165  Identities=8%  Similarity=-0.055  Sum_probs=118.3

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCcch----hhHHHHHhhHhhhcChhhHHHHHHHHHh----CCCCc-cHH
Q 045498           42 VYSSLINGLCTFNRLKEAVELFDKMVAQG-ITAEL----VTYNPLIHDNWEKQGRFSAMALLQTLER----DKYEL-NIE  111 (207)
Q Consensus        42 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~~-~~~  111 (207)
                      ++..+...|.+.|++++|.+.+.++.+.- ..++.    .+.+.+-..+...|+.+.+..++.....    .+..+ -..
T Consensus        57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  136 (434)
T 4b4t_Q           57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS  136 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence            47788999999999999999999876421 11121    2333344445567889999998887643    22222 356


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC-C-C--h
Q 045498          112 VYSLVIDGLCRVGRWEEARKKLDQLSEK----GLVP-GVVTYNILINGLCKKGMIMEADKLLVQMKEK--GCF-P-D--S  180 (207)
Q Consensus       112 ~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~-p-~--~  180 (207)
                      ++..+...+...|++++|..+++.....    +-++ ....+..++..|...|++++|..+++.....  .+. | .  .
T Consensus       137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  216 (434)
T 4b4t_Q          137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA  216 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence            7888999999999999999999887643    1112 2457888899999999999999999987643  121 2 1  2


Q ss_pred             hhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          181 TSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       181 ~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      ..+..+...+...|++++|...+.+.
T Consensus       217 ~~~~~~g~~~~~~~~y~~A~~~~~~a  242 (434)
T 4b4t_Q          217 ELDLMSGILHCEDKDYKTAFSYFFES  242 (434)
T ss_dssp             HHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            45666777788899999998887653

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.43  E-value=1.1e-05  Score=52.49  Aligned_cols=65  Identities=14%  Similarity=0.097  Sum_probs=45.3

Q ss_pred             cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498          109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK  174 (207)
Q Consensus       109 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  174 (207)
                      +...|..+..+|.+.|++++|...++...+.... +...|..+..+|...|++++|...|+...+.
T Consensus        62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            3456666777777777777777777777766432 5667777777777777777777777777665

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.41  E-value=8.8e-07  Score=54.47  Aligned_cols=88  Identities=17%  Similarity=0.092  Sum_probs=70.0

Q ss_pred             hcCChhHHHHHHHHHHhCC--CCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHH
Q 045498           52 TFNRLKEAVELFDKMVAQG--ITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA  129 (207)
Q Consensus        52 ~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a  129 (207)
                      ..|++++|+..|++..+.+  -+.+...+..+..++...|++++|...+++..+.... +...+..+..++.+.|++++|
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence            4688999999999998864  2345567888889999999999999999998887533 677888899999999999999


Q ss_pred             HHHHHHHHhCC
Q 045498          130 RKKLDQLSEKG  140 (207)
Q Consensus       130 ~~~~~~~~~~g  140 (207)
                      ...+++..+..
T Consensus        81 ~~~~~~al~~~   91 (117)
T 3k9i_A           81 VELLLKIIAET   91 (117)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhC
Confidence            99999887763

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.40  E-value=1.1e-05  Score=57.51  Aligned_cols=100  Identities=12%  Similarity=0.011  Sum_probs=87.4

Q ss_pred             ccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHH
Q 045498           38 LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI  117 (207)
Q Consensus        38 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li  117 (207)
                      .+...+..+...+.+.|++++|+..|++..+.. +.+...|..+-.++...|++++|...+++..+.. +.+...+..+.
T Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg   79 (281)
T 2c2l_A            2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG   79 (281)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            356778888899999999999999999998864 4477888899999999999999999999988875 33678889999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHhC
Q 045498          118 DGLCRVGRWEEARKKLDQLSEK  139 (207)
Q Consensus       118 ~~~~~~~~~~~a~~~~~~~~~~  139 (207)
                      .++.+.|++++|...+++..+.
T Consensus        80 ~~~~~~g~~~~A~~~~~~al~l  101 (281)
T 2c2l_A           80 QCQLEMESYDEAIANLQRAYSL  101 (281)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh
Confidence            9999999999999999988765

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.39  E-value=1.5e-05  Score=51.79  Aligned_cols=100  Identities=14%  Similarity=0.072  Sum_probs=83.7

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhC--------C---------CCcchhhHHHHHhhHhhhcChhhHHHHHHHHH
Q 045498           40 VFVYSSLINGLCTFNRLKEAVELFDKMVAQ--------G---------ITAELVTYNPLIHDNWEKQGRFSAMALLQTLE  102 (207)
Q Consensus        40 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--------~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~  102 (207)
                      ...+...-..+.+.|++++|+..|.+....        .         .+.+...|..+-.++.+.|++++|...+++..
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            456777888899999999999999988764        1         12234678888889999999999999999988


Q ss_pred             hCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC
Q 045498          103 RDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG  140 (207)
Q Consensus       103 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g  140 (207)
                      +.. +.+...|..+..+|...|++++|...|+...+..
T Consensus        91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  127 (162)
T 3rkv_A           91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH  127 (162)
T ss_dssp             HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence            875 3468889999999999999999999999998873

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.39  E-value=3.2e-06  Score=65.06  Aligned_cols=140  Identities=11%  Similarity=-0.082  Sum_probs=100.5

Q ss_pred             CCCccHHhHHHHHH----------HHHhcCChhHHHHHHHHHHhC-----C--CCcchhhHHHHHhhHhhhcChhhHHHH
Q 045498           35 GICLDVFVYSSLIN----------GLCTFNRLKEAVELFDKMVAQ-----G--ITAELVTYNPLIHDNWEKQGRFSAMAL   97 (207)
Q Consensus        35 ~~~~~~~~~~~ll~----------~~~~~~~~~~a~~~~~~m~~~-----~--~~~~~~~~~~ll~~~~~~~~~~~a~~~   97 (207)
                      +.+++..++..++.          .+...|++++|+.++++..+.     |  .+....+++.|..+|...|++++|..+
T Consensus       294 ~~~~s~e~v~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~  373 (490)
T 3n71_A          294 DPKPSQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHY  373 (490)
T ss_dssp             SSCCCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            34456655544333          355789999999999887642     1  112345788899999999999999998


Q ss_pred             HHHHHhC-----CC-Cc-cHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-----CCCC-CC-hhhHHHHHHHHHhcCCHHH
Q 045498           98 LQTLERD-----KY-EL-NIEVYSLVIDGLCRVGRWEEARKKLDQLSE-----KGLV-PG-VVTYNILINGLCKKGMIME  163 (207)
Q Consensus        98 ~~~m~~~-----~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~g~~-~~-~~~~~~li~~~~~~~~~~~  163 (207)
                      +++..+.     |. .| ...+++.+...|...|++++|..++++..+     .|.. |+ ..+.+.+-.++...+.+++
T Consensus       374 ~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~  453 (490)
T 3n71_A          374 ARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQ  453 (490)
T ss_dssp             HHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence            8876533     21 22 356788999999999999999999887653     2432 22 3345666678888899999


Q ss_pred             HHHHHHHHHHc
Q 045498          164 ADKLLVQMKEK  174 (207)
Q Consensus       164 a~~~~~~m~~~  174 (207)
                      |+.+|..+++.
T Consensus       454 ae~~~~~~~~~  464 (490)
T 3n71_A          454 NEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998864

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.36  E-value=3.3e-06  Score=62.02  Aligned_cols=144  Identities=11%  Similarity=-0.046  Sum_probs=65.6

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 045498           41 FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL  120 (207)
Q Consensus        41 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  120 (207)
                      ..+..+-..+.+.|++++|+..|++..+..  |+...       +...++.+++...+          ....|..+..+|
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~~  240 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAACL  240 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHHH
Confidence            334555555666666666666666665542  22221       11112222211111          012566677777


Q ss_pred             hcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHH-HHhcCchhH
Q 045498          121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP-DSTSFNTVIQG-FLVKNETDR  198 (207)
Q Consensus       121 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~-~~~~~~~~~  198 (207)
                      .+.|++++|...+++..+.... +...|..+..+|...|++++|...|++..+.  .| +..++..+... ....+..++
T Consensus       241 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~  317 (338)
T 2if4_A          241 IKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQK  317 (338)
T ss_dssp             HTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred             HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777777765432 5667777777777777777777777776554  23 33344444433 223445556


Q ss_pred             HHHHHHhh
Q 045498          199 ASSFLKKN  206 (207)
Q Consensus       199 a~~~~~~m  206 (207)
                      +.+.|++|
T Consensus       318 a~~~~~~~  325 (338)
T 2if4_A          318 QKEMYKGI  325 (338)
T ss_dssp             --------
T ss_pred             HHHHHHHh
Confidence            66666554

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.36  E-value=4.1e-06  Score=59.54  Aligned_cols=124  Identities=9%  Similarity=-0.064  Sum_probs=97.0

Q ss_pred             HHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHh
Q 045498           80 PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG--VVTYNILINGLCK  157 (207)
Q Consensus        80 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~  157 (207)
                      .+...+...|++++|.++|+.+...+  |+......+...+.+.++|++|+..|+...+.. .|.  ...+..+-.++.+
T Consensus       107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~  183 (282)
T 4f3v_A          107 GFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAAN  183 (282)
T ss_dssp             HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHH
Confidence            35567888999999999999887654  443366667778899999999999998555431 111  2367778899999


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          158 KGMIMEADKLLVQMKEKGCFPD--STSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       158 ~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      .|++++|...|++.......|.  .........++.+.|+.++|..+|+++
T Consensus       184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a  234 (282)
T 4f3v_A          184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL  234 (282)
T ss_dssp             TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999999999885533253  346677888899999999999999876

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.35  E-value=4.1e-06  Score=64.49  Aligned_cols=123  Identities=11%  Similarity=0.008  Sum_probs=93.3

Q ss_pred             hHhhhcChhhHHHHHHHHHhCC---C---Cc-cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-----CCC-C-ChhhHH
Q 045498           84 DNWEKQGRFSAMALLQTLERDK---Y---EL-NIEVYSLVIDGLCRVGRWEEARKKLDQLSEK-----GLV-P-GVVTYN  149 (207)
Q Consensus        84 ~~~~~~~~~~a~~~~~~m~~~~---~---~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----g~~-~-~~~~~~  149 (207)
                      .+...|++++|..++++..+..   +   .| ...+++.+...|...|++++|..++++..+.     |.. | ...+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            3557899999999998865431   1   12 3578999999999999999999999877543     322 2 255789


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCC-hhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          150 ILINGLCKKGMIMEADKLLVQMKEK-----GC-FPD-STSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       150 ~li~~~~~~~~~~~a~~~~~~m~~~-----~~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      .|...|...|++++|..++++..+-     |- .|+ ..+...+-.++...+.+++|...++++
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~  461 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM  461 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999987642     31 232 345566777888899999999988765

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.35  E-value=1.4e-06  Score=52.58  Aligned_cols=90  Identities=18%  Similarity=0.013  Sum_probs=56.1

Q ss_pred             cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------hh
Q 045498          109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD-------ST  181 (207)
Q Consensus       109 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-------~~  181 (207)
                      +...+..+...+.+.|++++|.+.+++..+.... +...+..+..++.+.|++++|...+++..+.  .|+       ..
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~   79 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK   79 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence            3455666666777777777777777776665332 5566667777777777777777777777654  333       34


Q ss_pred             hHHHHHHHHHhcCchhHHHH
Q 045498          182 SFNTVIQGFLVKNETDRASS  201 (207)
Q Consensus       182 ~~~~l~~~~~~~~~~~~a~~  201 (207)
                      .+..+..++...|+.+.|.+
T Consensus        80 ~~~~~~~~~~~~~~~~~a~~   99 (111)
T 2l6j_A           80 LQYRLELAQGAVGSVQIPVV   99 (111)
T ss_dssp             HHHHHHHHHHHHHCCCCCSS
T ss_pred             HHHHHHHHHHHHHhHhhhHh
Confidence            45555555555555554443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.34  E-value=3.8e-06  Score=61.68  Aligned_cols=143  Identities=9%  Similarity=0.016  Sum_probs=71.1

Q ss_pred             hhhHHHHHhhhhhhhHHHHH---H--cCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhh
Q 045498           13 HVYGIRINGMCKIREIDSAI---K--KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE   87 (207)
Q Consensus        13 ~~~~~ll~~~~~~g~~~~a~---~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~   87 (207)
                      ..+..+...+.+.|++++|.   .  ....|+...       +...++.+++...+          ....|..+-.++.+
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~~~~  242 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAACLIK  242 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHHHHH
Confidence            44566667777788888887   2  222333221       12223333333222          11367777778888


Q ss_pred             hcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH-HHhcCCHHHHHH
Q 045498           88 KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILING-LCKKGMIMEADK  166 (207)
Q Consensus        88 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~-~~~~~~~~~a~~  166 (207)
                      .|++++|...+++..+.. +.+...+..+..+|...|++++|...|++..+.... +...+..+... ....+..+++..
T Consensus       243 ~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a~~  320 (338)
T 2if4_A          243 LKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQKE  320 (338)
T ss_dssp             TTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred             cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888877764 336778888888888888999998888888765322 34444444444 234456677777


Q ss_pred             HHHHHHHc
Q 045498          167 LLVQMKEK  174 (207)
Q Consensus       167 ~~~~m~~~  174 (207)
                      .|..+...
T Consensus       321 ~~~~~l~~  328 (338)
T 2if4_A          321 MYKGIFKG  328 (338)
T ss_dssp             --------
T ss_pred             HHHHhhCC
Confidence            77777654

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.32  E-value=0.00016  Score=53.01  Aligned_cols=189  Identities=11%  Similarity=0.009  Sum_probs=121.0

Q ss_pred             hHHHHHhhhhhh-hHHHHH------HcCCCccHHhHHHHHHHHHhc-C-ChhHHHHHHHHHHhCCCCcchhhHHHHHhhH
Q 045498           15 YGIRINGMCKIR-EIDSAI------KKGICLDVFVYSSLINGLCTF-N-RLKEAVELFDKMVAQGITAELVTYNPLIHDN   85 (207)
Q Consensus        15 ~~~ll~~~~~~g-~~~~a~------~~~~~~~~~~~~~ll~~~~~~-~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~   85 (207)
                      |+.--..+...| .+++++      -...+-+..+|+.--..+.+. + ++++++++++++.+.. +-+..+|+--...+
T Consensus        91 Wn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl  169 (349)
T 3q7a_A           91 WQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLY  169 (349)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            444334444445 355555      223344566677766666665 5 7788888888887664 44666777666666


Q ss_pred             hhhcChh--------hHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhCCCCCChhhHHH
Q 045498           86 WEKQGRF--------SAMALLQTLERDKYELNIEVYSLVIDGLCRVGR-------WEEARKKLDQLSEKGLVPGVVTYNI  150 (207)
Q Consensus        86 ~~~~~~~--------~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~-------~~~a~~~~~~~~~~g~~~~~~~~~~  150 (207)
                      .+.+.++        ++++.++++.+..+. |...|+-....+.+.++       ++++.+.+++.....+. |...|+-
T Consensus       170 ~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Y  247 (349)
T 3q7a_A          170 SHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNY  247 (349)
T ss_dssp             HHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred             HHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence            6666666        788888888777644 77777777777777765       67888888877776544 6777777


Q ss_pred             HHHHHHhcCCH--------------------HHHHHHHHHHHHcC-----CCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498          151 LINGLCKKGMI--------------------MEADKLLVQMKEKG-----CFPDSTSFNTVIQGFLVKNETDRASSFLKK  205 (207)
Q Consensus       151 li~~~~~~~~~--------------------~~a~~~~~~m~~~~-----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  205 (207)
                      +-..+.+.|..                    ........++...+     -.++...+..|+..|...|+.++|.++++.
T Consensus       248 lr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~  327 (349)
T 3q7a_A          248 LRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEK  327 (349)
T ss_dssp             HHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            66666665543                    23333333333221     135777888899999999999999988876


Q ss_pred             h
Q 045498          206 N  206 (207)
Q Consensus       206 m  206 (207)
                      +
T Consensus       328 l  328 (349)
T 3q7a_A          328 L  328 (349)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.30  E-value=0.00027  Score=51.05  Aligned_cols=163  Identities=10%  Similarity=0.024  Sum_probs=122.6

Q ss_pred             cHHhHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCcchhhHHHHHhhH----hhh---cChhhHHHHHHHHHhCCCCcc
Q 045498           39 DVFVYSSLINGLCTFN--RLKEAVELFDKMVAQGITAELVTYNPLIHDN----WEK---QGRFSAMALLQTLERDKYELN  109 (207)
Q Consensus        39 ~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~----~~~---~~~~~a~~~~~~m~~~~~~~~  109 (207)
                      +..+|+.--..+...+  +++++++.++.+...+ +-+..+|+.--..+    ...   +++++++.+++.+.+...+ +
T Consensus        66 ~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-n  143 (306)
T 3dra_A           66 HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK-N  143 (306)
T ss_dssp             CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-C
T ss_pred             HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-C
Confidence            3455777777777777  8999999999988765 44556666655555    444   6788899999998887644 7


Q ss_pred             HHHHHHHHHHHhcCCCHH--HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC------HHHHHHHHHHHHHcCCCCChh
Q 045498          110 IEVYSLVIDGLCRVGRWE--EARKKLDQLSEKGLVPGVVTYNILINGLCKKGM------IMEADKLLVQMKEKGCFPDST  181 (207)
Q Consensus       110 ~~~~~~li~~~~~~~~~~--~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~------~~~a~~~~~~m~~~~~~p~~~  181 (207)
                      -..|+--.-.+.+.|.++  ++.+.++.+.+..+. |-..|+.-.....+.+.      ++++.+.++.+.... +-|..
T Consensus       144 y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~S  221 (306)
T 3dra_A          144 HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPS  221 (306)
T ss_dssp             HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHH
T ss_pred             HHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCcc
Confidence            778887777778888887  899999999888765 78888877777777776      888999999998884 34888


Q ss_pred             hHHHHHHHHHhcCchhH-HHHHHHh
Q 045498          182 SFNTVIQGFLVKNETDR-ASSFLKK  205 (207)
Q Consensus       182 ~~~~l~~~~~~~~~~~~-a~~~~~~  205 (207)
                      .|+.+-..+.+.|+... +..+.++
T Consensus       222 aW~y~~~ll~~~~~~~~~~~~~~~~  246 (306)
T 3dra_A          222 TWNYLLGIHERFDRSITQLEEFSLQ  246 (306)
T ss_dssp             HHHHHHHHHHHTTCCGGGGHHHHHT
T ss_pred             HHHHHHHHHHhcCCChHHHHHHHHH
Confidence            88888888888888554 3344443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.27  E-value=5.7e-05  Score=47.84  Aligned_cols=113  Identities=12%  Similarity=-0.084  Sum_probs=86.1

Q ss_pred             cCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhc----CCCHHH
Q 045498           53 FNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR----VGRWEE  128 (207)
Q Consensus        53 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~  128 (207)
                      .+++++|++.|++..+.|. |+..    |-..|...+..++|.+.|++..+.|   +...+..+-..|..    .+++++
T Consensus         8 ~~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~   79 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK   79 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             ccCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence            3467888899988888872 3322    5556666677788888888887775   55667777777776    788899


Q ss_pred             HHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCC
Q 045498          129 ARKKLDQLSEKGLVPGVVTYNILINGLCK----KGMIMEADKLLVQMKEKGC  176 (207)
Q Consensus       129 a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~  176 (207)
                      |.+.|++..+.|   +...+..|-..|..    .+++++|...|+...+.|.
T Consensus        80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            999998888875   66778888888887    7888999999888887753

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.20  E-value=0.00019  Score=45.43  Aligned_cols=110  Identities=10%  Similarity=-0.122  Sum_probs=81.0

Q ss_pred             hhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCH
Q 045498           86 WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK----KGMI  161 (207)
Q Consensus        86 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~~~~  161 (207)
                      ...++.++|...|++..+.| .|...    +-..|...+.+++|.+.|++..+.|   +...+..|-..|..    .+++
T Consensus         6 g~~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~   77 (138)
T 1klx_A            6 TVKKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDL   77 (138)
T ss_dssp             SHHHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCH
T ss_pred             CCccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccH
Confidence            34456778888888887777 33332    5566666677788888888887764   66777777777777    7788


Q ss_pred             HHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCchhHHHHHHHhh
Q 045498          162 MEADKLLVQMKEKGCFPDSTSFNTVIQGFLV----KNETDRASSFLKKN  206 (207)
Q Consensus       162 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m  206 (207)
                      ++|...|+...+.|   ++.++..|-..|..    .++.++|.+++++.
T Consensus        78 ~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A  123 (138)
T 1klx_A           78 RKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA  123 (138)
T ss_dssp             HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence            88888888887764   56777778888877    78888888888753

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.19  E-value=0.00029  Score=55.41  Aligned_cols=149  Identities=8%  Similarity=-0.021  Sum_probs=117.5

Q ss_pred             CChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcC----------hhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcC
Q 045498           54 NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG----------RFSAMALLQTLERDKYELNIEVYSLVIDGLCRV  123 (207)
Q Consensus        54 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  123 (207)
                      ...++|++.++++...+ +-+..+|+.--.++...++          +++++..++.+.+...+ +..+|+.---.+.+.
T Consensus        43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l  120 (567)
T 1dce_A           43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRL  120 (567)
T ss_dssp             CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence            34567899999998875 3455667666666666666          88999999999887644 778888888888888


Q ss_pred             C--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-------
Q 045498          124 G--RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG-MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK-------  193 (207)
Q Consensus       124 ~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-------  193 (207)
                      +  +++++.+.++++.+...+ +..+|+.--....+.| .++++.+.++.+.+.... |..+|......+.+.       
T Consensus       121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~  198 (567)
T 1dce_A          121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG  198 (567)
T ss_dssp             SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSS
T ss_pred             ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccc
Confidence            9  779999999999998766 8888988888888888 899999999998876433 777888877776663       


Q ss_pred             -------CchhHHHHHHHhh
Q 045498          194 -------NETDRASSFLKKN  206 (207)
Q Consensus       194 -------~~~~~a~~~~~~m  206 (207)
                             +.++++.+++++.
T Consensus       199 ~~~~~~~~~~~eel~~~~~a  218 (567)
T 1dce_A          199 PQGRLPENVLLKELELVQNA  218 (567)
T ss_dssp             SCCSSCHHHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHHH
Confidence                   5678888877664

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.17  E-value=0.0005  Score=50.48  Aligned_cols=154  Identities=8%  Similarity=-0.045  Sum_probs=117.1

Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhc-ChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcC-C-C
Q 045498           49 GLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ-GRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV-G-R  125 (207)
Q Consensus        49 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-~-~  125 (207)
                      ...+....++|+++++++...+ +-+..+|+.--.++...+ .+++++..++.+.....+ +..+|+.--..+.+. + +
T Consensus        63 ~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~  140 (349)
T 3q7a_A           63 IAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQD  140 (349)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSC
T ss_pred             HHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCC
Confidence            3344556678999999999875 445566777766777777 599999999999988654 777888777776666 6 8


Q ss_pred             HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCc--
Q 045498          126 WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIM--------EADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE--  195 (207)
Q Consensus       126 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~--  195 (207)
                      +++++++++.+.+...+ |..+|+.-.....+.|.++        ++.+.++++.+.... |..+|+.-...+.+.++  
T Consensus       141 ~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~  218 (349)
T 3q7a_A          141 PVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAE  218 (349)
T ss_dssp             CHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCC
T ss_pred             hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence            89999999999988655 7788877666666666665        899999999887543 77888888888877775  


Q ss_pred             -----hhHHHHHHHhh
Q 045498          196 -----TDRASSFLKKN  206 (207)
Q Consensus       196 -----~~~a~~~~~~m  206 (207)
                           +++++++++++
T Consensus       219 ~~~~~~~eELe~~~~a  234 (349)
T 3q7a_A          219 TSSRSLQDELIYILKS  234 (349)
T ss_dssp             CCHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHH
Confidence                 67777777654

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.17  E-value=4.2e-05  Score=49.49  Aligned_cols=94  Identities=12%  Similarity=-0.074  Sum_probs=52.4

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC------C-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC
Q 045498          113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVP------G-----VVTYNILINGLCKKGMIMEADKLLVQMKEK-----GC  176 (207)
Q Consensus       113 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~------~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~  176 (207)
                      +...-..+.+.|++++|.+.|++..+.....      +     ...|..+..++.+.|++++|...+++..+.     -+
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~   93 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   93 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence            3344444555566666666665555442210      1     125666666666666666666666666553     11


Q ss_pred             CC-ChhhH----HHHHHHHHhcCchhHHHHHHHhh
Q 045498          177 FP-DSTSF----NTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       177 ~p-~~~~~----~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      .| +...|    .....++...|++++|+..|++.
T Consensus        94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA  128 (159)
T 2hr2_A           94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV  128 (159)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence            33 33455    66666777777777777766653

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.17  E-value=3.5e-05  Score=46.87  Aligned_cols=79  Identities=11%  Similarity=-0.015  Sum_probs=44.2

Q ss_pred             hHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045498           93 SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK  172 (207)
Q Consensus        93 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  172 (207)
                      .+...+++..+.. +.+...+..+...+.+.|++++|...+++..+.... +...+..+..++...|++++|...|+...
T Consensus         3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3445555554443 224455555666666666666666666666554322 34555566666666666666666666555


Q ss_pred             H
Q 045498          173 E  173 (207)
Q Consensus       173 ~  173 (207)
                      +
T Consensus        81 ~   81 (115)
T 2kat_A           81 A   81 (115)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.16  E-value=7.6e-05  Score=48.30  Aligned_cols=76  Identities=16%  Similarity=0.027  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhC-------CCCCChhhH----HHHHHHHHhcCCHHHHHHHHHHHHHc-----
Q 045498          111 EVYSLVIDGLCRVGRWEEARKKLDQLSEK-------GLVPGVVTY----NILINGLCKKGMIMEADKLLVQMKEK-----  174 (207)
Q Consensus       111 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~----~~li~~~~~~~~~~~a~~~~~~m~~~-----  174 (207)
                      ..|+.+-.++.+.|++++|...+++..+.       ... +...|    ...-.++...|++++|...|+...+.     
T Consensus        58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~  136 (159)
T 2hr2_A           58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK  136 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence            37888888888889998888888888775       432 45677    88888889999999999999988753     


Q ss_pred             CCCCChhhHHHHH
Q 045498          175 GCFPDSTSFNTVI  187 (207)
Q Consensus       175 ~~~p~~~~~~~l~  187 (207)
                      |+.+........+
T Consensus       137 ~~~~~~~~~~~~~  149 (159)
T 2hr2_A          137 GETPGKERMMEVA  149 (159)
T ss_dssp             SCCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            4555444444333

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.11  E-value=0.00011  Score=42.19  Aligned_cols=81  Identities=15%  Similarity=0.057  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 045498          110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG  189 (207)
Q Consensus       110 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~  189 (207)
                      ...+..+...+.+.|++++|...+++..+.... +...+..+...+.+.|++++|...+++..+.. +.+..++..+..+
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~   86 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            456666667777777777777777777665432 55667777777777888888888877777652 2244555555555


Q ss_pred             HHh
Q 045498          190 FLV  192 (207)
Q Consensus       190 ~~~  192 (207)
                      +..
T Consensus        87 ~~~   89 (91)
T 1na3_A           87 KQK   89 (91)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.05  E-value=7.4e-05  Score=45.38  Aligned_cols=77  Identities=9%  Similarity=0.002  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          128 EARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       128 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      .|.+.+++..+.... +...+..+...|...|++++|...|++..+.. +.+...+..+..++...|++++|...+++.
T Consensus         3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A            3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            467778887776533 67889999999999999999999999998873 346778999999999999999999999875

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.00  E-value=0.002  Score=47.06  Aligned_cols=162  Identities=9%  Similarity=0.022  Sum_probs=115.8

Q ss_pred             HhHHHHHHHH---HhcCChh-HHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcC----------hhhHHHHHHHHHhCCC
Q 045498           41 FVYSSLINGL---CTFNRLK-EAVELFDKMVAQGITAELVTYNPLIHDNWEKQG----------RFSAMALLQTLERDKY  106 (207)
Q Consensus        41 ~~~~~ll~~~---~~~~~~~-~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~~  106 (207)
                      ..|..+...+   .+.|.++ +|+.+++.+...+ |-+..+|+.--.++...+.          +++++.+++.+.....
T Consensus        27 ~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P  105 (331)
T 3dss_A           27 KLYQSATQAVFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP  105 (331)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC
Confidence            3455444433   3456655 7999999998875 3344455554333333332          5788889988887764


Q ss_pred             CccHHHHHHHHHHHhcCC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCChhhH
Q 045498          107 ELNIEVYSLVIDGLCRVG--RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM-IMEADKLLVQMKEKGCFPDSTSF  183 (207)
Q Consensus       107 ~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~  183 (207)
                      + +..+|+.---.+.+.+  .++++.++++.+.+...+ |...|+.--....+.|. ++++.+.++.+.+... -|..+|
T Consensus       106 K-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW  182 (331)
T 3dss_A          106 K-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSW  182 (331)
T ss_dssp             T-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHH
T ss_pred             C-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHH
Confidence            4 7778887777777777  489999999999998765 88888888877888888 5899999999998754 377778


Q ss_pred             HHHHHHHHhc--------------CchhHHHHHHHhh
Q 045498          184 NTVIQGFLVK--------------NETDRASSFLKKN  206 (207)
Q Consensus       184 ~~l~~~~~~~--------------~~~~~a~~~~~~m  206 (207)
                      +.....+.+.              +.++++++++++.
T Consensus       183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~a  219 (331)
T 3dss_A          183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNA  219 (331)
T ss_dssp             HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHH
Confidence            7777666655              4577787777654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.97  E-value=4.3e-05  Score=45.85  Aligned_cols=65  Identities=17%  Similarity=0.078  Sum_probs=36.9

Q ss_pred             cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhC
Q 045498           39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERD  104 (207)
Q Consensus        39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~  104 (207)
                      +...+..+...+.+.|++++|+..|++..+.. +.+...+..+-.++...|++++|...+++..+.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   67 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY   67 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            34455555566666666666666666665543 334455555555555666666666666555544

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.95  E-value=0.00018  Score=41.27  Aligned_cols=61  Identities=15%  Similarity=0.115  Sum_probs=28.1

Q ss_pred             HHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 045498           78 YNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK  139 (207)
Q Consensus        78 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  139 (207)
                      +..+-..+...|++++|...+++..+.. +.+...+..+..++.+.|++++|.+.+++..+.
T Consensus        12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A           12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            3334444444444444444444444332 113344444455555555555555555555443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.95  E-value=0.0018  Score=50.08  Aligned_cols=156  Identities=10%  Similarity=-0.059  Sum_probs=78.4

Q ss_pred             ccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCC------------
Q 045498           38 LDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDK------------  105 (207)
Q Consensus        38 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~------------  105 (207)
                      .++..|-..+..+.+.|++++|..+|++....  |.+...+..    +....+.++.   ++.+.+.-            
T Consensus       211 ~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~  281 (493)
T 2uy1_A          211 YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVF  281 (493)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------C
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhc
Confidence            34666777777777888999999999988876  333322221    1111111111   22211110            


Q ss_pred             CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCChhhHH
Q 045498          106 YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK-GMIMEADKLLVQMKEKGCFPDSTSFN  184 (207)
Q Consensus       106 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~~  184 (207)
                      ......+|...+....+.++.+.|..+|+.. ... ..+...|......-... ++++.|..+|+...+.- +-++..+.
T Consensus       282 ~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~  358 (493)
T 2uy1_A          282 SKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKE  358 (493)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             ccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHH
Confidence            0111234555555555566677777777766 221 12333333222211222 24677777777666542 11233344


Q ss_pred             HHHHHHHhcCchhHHHHHHHh
Q 045498          185 TVIQGFLVKNETDRASSFLKK  205 (207)
Q Consensus       185 ~l~~~~~~~~~~~~a~~~~~~  205 (207)
                      ..++...+.|+.+.|..+|+.
T Consensus       359 ~yid~e~~~~~~~~aR~l~er  379 (493)
T 2uy1_A          359 EFFLFLLRIGDEENARALFKR  379 (493)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHH
Confidence            455555566666666666654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.93  E-value=0.00011  Score=43.66  Aligned_cols=84  Identities=13%  Similarity=-0.083  Sum_probs=51.5

Q ss_pred             cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHHHHH
Q 045498          109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG-CFPDSTSFNTVI  187 (207)
Q Consensus       109 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~  187 (207)
                      +...+..+..+|.+.|++++|.+.|++..+.... +...|..+..+|.+.|++++|...|++..+.. -.++......+.
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~   84 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ   84 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence            4556666667777777777777777777666433 45566777777777777777777777665431 123444444444


Q ss_pred             HHHHhc
Q 045498          188 QGFLVK  193 (207)
Q Consensus       188 ~~~~~~  193 (207)
                      ..+.+.
T Consensus        85 ~~l~~~   90 (100)
T 3ma5_A           85 DAKLKA   90 (100)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            444443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=97.91  E-value=0.0023  Score=46.71  Aligned_cols=147  Identities=7%  Similarity=-0.055  Sum_probs=111.3

Q ss_pred             hhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhc--ChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC-HHHHHHH
Q 045498           56 LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ--GRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR-WEEARKK  132 (207)
Q Consensus        56 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~  132 (207)
                      +++++.+++.+...+ +-+..+|+.--..+...+  .+++++.+++.+.+.... |-..|+--.-.+.+.|. ++++.+.
T Consensus        90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~  167 (331)
T 3dss_A           90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF  167 (331)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence            678999999998765 557778888777777777  488999999999988744 77888877777778888 6999999


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHhc--------------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-----
Q 045498          133 LDQLSEKGLVPGVVTYNILINGLCKK--------------GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVK-----  193 (207)
Q Consensus       133 ~~~~~~~g~~~~~~~~~~li~~~~~~--------------~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-----  193 (207)
                      ++.+.+..+. |...|+.....+.+.              +.++++.+.+....... +-|..+|+-+--.+.+.     
T Consensus       168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~  245 (331)
T 3dss_A          168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCE  245 (331)
T ss_dssp             HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGG
T ss_pred             HHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccc
Confidence            9999998765 788888776666655              45788999999888763 33666676554444444     


Q ss_pred             ------CchhHHHHHHHhh
Q 045498          194 ------NETDRASSFLKKN  206 (207)
Q Consensus       194 ------~~~~~a~~~~~~m  206 (207)
                            +.++++++.++++
T Consensus       246 ~~~~~~~~l~~el~~~~el  264 (331)
T 3dss_A          246 LSVEKSTVLQSELESCKEL  264 (331)
T ss_dssp             CCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHH
Confidence                  3567777777665

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.85  E-value=0.00014  Score=46.96  Aligned_cols=70  Identities=4%  Similarity=-0.148  Sum_probs=36.8

Q ss_pred             hcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChh----------hHHHHHHHHHhCCCCccHHHHHHHHHHHh
Q 045498           52 TFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF----------SAMALLQTLERDKYELNIEVYSLVIDGLC  121 (207)
Q Consensus        52 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~----------~a~~~~~~m~~~~~~~~~~~~~~li~~~~  121 (207)
                      +.+++++|++.+++..+.. +.+...|..+-.++...++++          +|+..|++..+.... +...|..+-.+|.
T Consensus        14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~   91 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT   91 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence            4455666666666666554 445556665666666655543          455555554444322 3444444545544


Q ss_pred             cC
Q 045498          122 RV  123 (207)
Q Consensus       122 ~~  123 (207)
                      ..
T Consensus        92 ~l   93 (158)
T 1zu2_A           92 SF   93 (158)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.82  E-value=0.00014  Score=46.98  Aligned_cols=104  Identities=11%  Similarity=-0.076  Sum_probs=72.9

Q ss_pred             HhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC----------HHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 045498           85 NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR----------WEEARKKLDQLSEKGLVPGVVTYNILING  154 (207)
Q Consensus        85 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~g~~~~~~~~~~li~~  154 (207)
                      ..+.+.+++|...++...+.. +-+...|..+-.++...++          +++|...|++..+.... +..+|..+-.+
T Consensus        12 ~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~a   89 (158)
T 1zu2_A           12 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNA   89 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHH
Confidence            445667778888888877765 3366677777667776655          35888888888877544 56677778787


Q ss_pred             HHhcC-----------CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 045498          155 LCKKG-----------MIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV  192 (207)
Q Consensus       155 ~~~~~-----------~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~  192 (207)
                      |...|           ++++|...|++..+.  .|+...|...+...-+
T Consensus        90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~~k  136 (158)
T 1zu2_A           90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMTAK  136 (158)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHT
T ss_pred             HHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHh
Confidence            77664           788888888888775  5666677666665544

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.78  E-value=0.00017  Score=42.69  Aligned_cols=62  Identities=15%  Similarity=0.020  Sum_probs=54.8

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       144 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      +...+..+...|.+.|++++|...|++..+.. +.+..+|..+..+|...|++++|.+.+++.
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   67 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG   67 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            56788899999999999999999999999874 335678999999999999999999999874

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.76  E-value=0.0015  Score=51.32  Aligned_cols=153  Identities=7%  Similarity=-0.043  Sum_probs=119.8

Q ss_pred             cHHhHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhc--ChhhHHHHHHHHHhCCC
Q 045498           39 DVFVYSSLINGLCTFNR----------LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ--GRFSAMALLQTLERDKY  106 (207)
Q Consensus        39 ~~~~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~  106 (207)
                      +..+|+.--.++.+.++          ++++++.++++.+.. +-+..+|+.--.++.+.+  ++++++..++++.+...
T Consensus        62 ~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~  140 (567)
T 1dce_A           62 FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE  140 (567)
T ss_dssp             CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcc
Confidence            34556665555666666          899999999999875 557788888888888888  67999999999999874


Q ss_pred             CccHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc--------------CCHHHHHHHHHHH
Q 045498          107 ELNIEVYSLVIDGLCRVG-RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK--------------GMIMEADKLLVQM  171 (207)
Q Consensus       107 ~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--------------~~~~~a~~~~~~m  171 (207)
                      . +...|+---..+.+.| .++++.+.++++.+..+. |...|+.....+.+.              +.++++.+.++..
T Consensus       141 ~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~a  218 (567)
T 1dce_A          141 R-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNA  218 (567)
T ss_dssp             T-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHH
T ss_pred             c-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHH
Confidence            4 7888888888888888 899999999999988765 788888877777663              5678999999888


Q ss_pred             HHcCCCCChhhHHHHHHHHHhcCc
Q 045498          172 KEKGCFPDSTSFNTVIQGFLVKNE  195 (207)
Q Consensus       172 ~~~~~~p~~~~~~~l~~~~~~~~~  195 (207)
                      .... +-|..+|.-+--.+.+.++
T Consensus       219 i~~~-P~~~saW~y~~~ll~~~~~  241 (567)
T 1dce_A          219 FFTD-PNDQSAWFYHRWLLGRAEP  241 (567)
T ss_dssp             HHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred             HhhC-CCCccHHHHHHHHHhcCCC
Confidence            8763 3366777776666666555

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.75  E-value=7.5e-05  Score=56.65  Aligned_cols=85  Identities=9%  Similarity=-0.128  Sum_probs=67.5

Q ss_pred             cCCCHHHHHHHHHHHHhC-----CCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-hhhHHHHH
Q 045498          122 RVGRWEEARKKLDQLSEK-----GLV-P-GVVTYNILINGLCKKGMIMEADKLLVQMKEK-----G-CFPD-STSFNTVI  187 (207)
Q Consensus       122 ~~~~~~~a~~~~~~~~~~-----g~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~-~~p~-~~~~~~l~  187 (207)
                      ..|++++|..++++..+.     |.. | ...+++.|..+|...|++++|..++++..+-     | -.|+ ..+++.|.
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            467899999999887653     211 2 2467899999999999999999999988643     2 2333 36799999


Q ss_pred             HHHHhcCchhHHHHHHHhh
Q 045498          188 QGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       188 ~~~~~~~~~~~a~~~~~~m  206 (207)
                      ..|...|++++|..++++.
T Consensus       390 ~~~~~qg~~~eA~~~~~~A  408 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKA  408 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHH
Confidence            9999999999999999875

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.74  E-value=0.00015  Score=54.98  Aligned_cols=92  Identities=15%  Similarity=0.094  Sum_probs=72.4

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhCC---CCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCC-Ch
Q 045498          115 LVIDGLCRVGRWEEARKKLDQLSEKG---LVP----GVVTYNILINGLCKKGMIMEADKLLVQMKEK-----G-CFP-DS  180 (207)
Q Consensus       115 ~li~~~~~~~~~~~a~~~~~~~~~~g---~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~-~~p-~~  180 (207)
                      ..+..+.+.|++++|..++++..+..   +.|    ...+++.+..+|...|++++|..++++..+-     | -.| ..
T Consensus       292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a  371 (429)
T 3qwp_A          292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG  371 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence            33556678899999999999887541   111    2557899999999999999999999987643     2 223 33


Q ss_pred             hhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          181 TSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       181 ~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      .+++.|...|...|++++|..++++.
T Consensus       372 ~~l~nLa~~~~~~g~~~eA~~~~~~A  397 (429)
T 3qwp_A          372 VQVMKVGKLQLHQGMFPQAMKNLRLA  397 (429)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            67889999999999999999999875

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.66  E-value=0.0038  Score=46.07  Aligned_cols=147  Identities=12%  Similarity=0.049  Sum_probs=98.5

Q ss_pred             HcCCCccHHhHHHHHHHHHh--cC---ChhHHHHHHHHHHhCCCCcc-hhhHHHHHhhHhhh---c-----ChhhHHHHH
Q 045498           33 KKGICLDVFVYSSLINGLCT--FN---RLKEAVELFDKMVAQGITAE-LVTYNPLIHDNWEK---Q-----GRFSAMALL   98 (207)
Q Consensus        33 ~~~~~~~~~~~~~ll~~~~~--~~---~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~---~-----~~~~a~~~~   98 (207)
                      ....+.+...|...+.+...  .+   ...+|..+|++..+..  |+ ...|..+..++...   +     ........+
T Consensus       187 ~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~  264 (372)
T 3ly7_A          187 QKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEI  264 (372)
T ss_dssp             HHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred             hccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Confidence            44566678888888876543  22   3578999999998874  44 33444333333211   1     111111122


Q ss_pred             HHHHhC-CCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 045498           99 QTLERD-KYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF  177 (207)
Q Consensus        99 ~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  177 (207)
                      +..... ..+.+..++..+...+...|++++|...+++....+  |+...|..+-..+.-.|++++|...|++....  .
T Consensus       265 ~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~  340 (372)
T 3ly7_A          265 DNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--R  340 (372)
T ss_dssp             HHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--S
T ss_pred             HHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--C
Confidence            221111 224567788877777777899999999999999985  78778878888899999999999999988876  6


Q ss_pred             CChhhHHH
Q 045498          178 PDSTSFNT  185 (207)
Q Consensus       178 p~~~~~~~  185 (207)
                      |...+|..
T Consensus       341 P~~~t~~~  348 (372)
T 3ly7_A          341 PGANTLYW  348 (372)
T ss_dssp             CSHHHHHH
T ss_pred             CCcChHHH
Confidence            77777653

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.62  E-value=0.00068  Score=39.68  Aligned_cols=54  Identities=24%  Similarity=0.195  Sum_probs=24.1

Q ss_pred             HhcCCCHHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498          120 LCRVGRWEEARKKLDQLSEKGLVPGVV-TYNILINGLCKKGMIMEADKLLVQMKEK  174 (207)
Q Consensus       120 ~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~  174 (207)
                      +.+.|++++|.+.+++..+.... +.. .+..+..+|...|++++|...|++..+.
T Consensus        10 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A           10 LINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            34444444444444444443211 233 4444444444445555555554444443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.59  E-value=0.00034  Score=53.09  Aligned_cols=87  Identities=9%  Similarity=0.031  Sum_probs=67.0

Q ss_pred             hhcChhhHHHHHHHHHhC---CCC---c-cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-----CCC-CC-hhhHHHHH
Q 045498           87 EKQGRFSAMALLQTLERD---KYE---L-NIEVYSLVIDGLCRVGRWEEARKKLDQLSEK-----GLV-PG-VVTYNILI  152 (207)
Q Consensus        87 ~~~~~~~a~~~~~~m~~~---~~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----g~~-~~-~~~~~~li  152 (207)
                      ..|++++|..++++..+.   -+.   | ...+++.+..+|...|++++|..++++..+.     |.. |+ ..+++.|.
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            346788999998876542   112   2 3578999999999999999999999887643     321 22 45689999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHH
Q 045498          153 NGLCKKGMIMEADKLLVQMKE  173 (207)
Q Consensus       153 ~~~~~~~~~~~a~~~~~~m~~  173 (207)
                      ..|...|++++|..++++..+
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHH
Confidence            999999999999999998764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.58  E-value=0.0029  Score=51.54  Aligned_cols=97  Identities=12%  Similarity=-0.010  Sum_probs=63.0

Q ss_pred             hhhhhHHHHHH---cCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHH
Q 045498           23 CKIREIDSAIK---KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQ   99 (207)
Q Consensus        23 ~~~g~~~~a~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~   99 (207)
                      ...+++++|.+   ..++ +......++..+.+.|.++.|+++.+.-       .     .-.......|++++|.++.+
T Consensus       610 ~~~~~~~~a~~~~l~~i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~-------~-----~~f~~~l~~~~~~~A~~~~~  676 (814)
T 3mkq_A          610 TLRGEIEEAIENVLPNVE-GKDSLTKIARFLEGQEYYEEALNISPDQ-------D-----QKFELALKVGQLTLARDLLT  676 (814)
T ss_dssp             HHTTCHHHHHHHTGGGCC-CHHHHHHHHHHHHHTTCHHHHHHHCCCH-------H-----HHHHHHHHHTCHHHHHHHHT
T ss_pred             HHhCCHHHHHHHHHhcCC-chHHHHHHHHHHHhCCChHHheecCCCc-------c-----hheehhhhcCCHHHHHHHHH
Confidence            34567777665   2223 1223377777777788888877665311       1     11334566788888888764


Q ss_pred             HHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 045498          100 TLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE  138 (207)
Q Consensus       100 ~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  138 (207)
                      .+      .+...|..+...+.+.++++.|.+.|..+..
T Consensus       677 ~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d  709 (814)
T 3mkq_A          677 DE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD  709 (814)
T ss_dssp             TC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred             hh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence            32      2567888888888888888888888887643

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.58  E-value=0.00048  Score=52.22  Aligned_cols=92  Identities=18%  Similarity=0.064  Sum_probs=70.4

Q ss_pred             HhhHhhhcChhhHHHHHHHHHhCC---CC----ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-----CCC-C-Chhh
Q 045498           82 IHDNWEKQGRFSAMALLQTLERDK---YE----LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK-----GLV-P-GVVT  147 (207)
Q Consensus        82 l~~~~~~~~~~~a~~~~~~m~~~~---~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----g~~-~-~~~~  147 (207)
                      +..+...|++++|..++++..+..   +.    ....+++.+...|...|++++|..++++....     |.. | ...+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            445667789999999998876542   11    23568899999999999999999999877543     321 2 2456


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045498          148 YNILINGLCKKGMIMEADKLLVQMKE  173 (207)
Q Consensus       148 ~~~li~~~~~~~~~~~a~~~~~~m~~  173 (207)
                      ++.|...|...|++++|..++++..+
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            88999999999999999999988764

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.46  E-value=0.011  Score=45.75  Aligned_cols=138  Identities=9%  Similarity=-0.136  Sum_probs=83.3

Q ss_pred             hHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 045498           57 KEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQL  136 (207)
Q Consensus        57 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  136 (207)
                      +.+..+|++..... +.+...|-..+..+.+.|+.+.|..++++....  +.+...+..    |+...+.++.   ++.+
T Consensus       196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l  265 (493)
T 2uy1_A          196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDL  265 (493)
T ss_dssp             HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHH
T ss_pred             HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHH
Confidence            34667888887653 556778888888888999999999999998887  333333322    2222111121   2222


Q ss_pred             HhC---------CC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCchhHHHHHH
Q 045498          137 SEK---------GL---VPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV-KNETDRASSFL  203 (207)
Q Consensus       137 ~~~---------g~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~  203 (207)
                      .+.         +.   ......|...+....+.+.++.|..+|+.. .. ...+...|......-.. .++.+.|..+|
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~if  343 (493)
T 2uy1_A          266 KRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIF  343 (493)
T ss_dssp             HHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred             HHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHH
Confidence            211         00   112345667777777788899999999999 32 12244444432222222 33689999998


Q ss_pred             Hhh
Q 045498          204 KKN  206 (207)
Q Consensus       204 ~~m  206 (207)
                      +..
T Consensus       344 e~a  346 (493)
T 2uy1_A          344 SSG  346 (493)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.37  E-value=0.0084  Score=44.25  Aligned_cols=133  Identities=10%  Similarity=-0.049  Sum_probs=89.7

Q ss_pred             CCcchhhHHHHHhhHhhh-----cChhhHHHHHHHHHhCCCCccHHHHHHHHHHHh----cCC----CHHHHHHHHHHHH
Q 045498           71 ITAELVTYNPLIHDNWEK-----QGRFSAMALLQTLERDKYELNIEVYSLVIDGLC----RVG----RWEEARKKLDQLS  137 (207)
Q Consensus        71 ~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~----~~~----~~~~a~~~~~~~~  137 (207)
                      .+.+...|...+.+....     ....+|..+|++..+.... ....+..+.-+|.    ..+    ........++...
T Consensus       190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~  268 (372)
T 3ly7_A          190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV  268 (372)
T ss_dssp             SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence            466778888888766542     3346799999998887532 3344443333332    111    1111111222211


Q ss_pred             hC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          138 EK-GLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       138 ~~-g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      .. .-..+..+|..+...+...|++++|...+++....+  |+...|..+-..+.-.|++++|.+.+++.
T Consensus       269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~A  336 (372)
T 3ly7_A          269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTA  336 (372)
T ss_dssp             TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            11 124467788888777778899999999999999985  78888888889999999999999999875

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.28  E-value=0.016  Score=47.15  Aligned_cols=131  Identities=12%  Similarity=0.044  Sum_probs=87.6

Q ss_pred             hHHHHHhhhhhhhHHHHHHcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhH
Q 045498           15 YGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSA   94 (207)
Q Consensus        15 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a   94 (207)
                      ...++..+.+.|.++.|+...-.|..     -.....+.|++++|.++.+.+      .+...|..+-..+.+.++++.|
T Consensus       632 ~~~~~~~l~~~~~~~~a~~~~~~~~~-----~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A  700 (814)
T 3mkq_A          632 LTKIARFLEGQEYYEEALNISPDQDQ-----KFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLA  700 (814)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHCCCHHH-----HHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHhCCChHHheecCCCcch-----heehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHH
Confidence            36677777888888888844434322     134456789999999986443      3668999999999999999999


Q ss_pred             HHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045498           95 MALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM  171 (207)
Q Consensus        95 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  171 (207)
                      .+.|.++..         |..+...+...|+.+...++.+.....|      -++....+|.+.|++++|.+++.++
T Consensus       701 ~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~  762 (814)
T 3mkq_A          701 IEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIKS  762 (814)
T ss_dssp             HHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence            999998753         3344444555666666666665555543      2233444455566666666666544

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.28  E-value=0.0013  Score=38.34  Aligned_cols=55  Identities=9%  Similarity=0.039  Sum_probs=28.0

Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCcchh-hHHHHHhhHhhhcChhhHHHHHHHHHhC
Q 045498           49 GLCTFNRLKEAVELFDKMVAQGITAELV-TYNPLIHDNWEKQGRFSAMALLQTLERD  104 (207)
Q Consensus        49 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~  104 (207)
                      .+.+.|++++|+..|++..+.. +.+.. .+..+-.++...|++++|...|++..+.
T Consensus         9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            3445555555555555555442 22333 4445555555555555555555555444

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.04  E-value=0.016  Score=33.71  Aligned_cols=65  Identities=12%  Similarity=0.015  Sum_probs=39.3

Q ss_pred             cHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498          109 NIEVYSLVIDGLCRVGR---WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK  174 (207)
Q Consensus       109 ~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  174 (207)
                      +...+..+..++...++   .++|..++++..+.... +......+...+.+.|++++|...|+.+.+.
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            44555555555543333   56677777766665433 4555666666666777777777777776665

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.99  E-value=0.005  Score=39.38  Aligned_cols=64  Identities=16%  Similarity=-0.043  Sum_probs=27.0

Q ss_pred             cHHHHHHHHHHHhcCC---CHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045498          109 NIEVYSLVIDGLCRVG---RWEEARKKLDQLSEKGLVP--GVVTYNILINGLCKKGMIMEADKLLVQMKE  173 (207)
Q Consensus       109 ~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  173 (207)
                      +..+...+..++++.+   +.+++..+++...+.. .|  +...+..|.-+|.+.|++++|.+.++.+.+
T Consensus        31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~   99 (152)
T 1pc2_A           31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ   99 (152)
T ss_dssp             CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            4444444444444444   3334444444444432 12  233333344444444444444444444444

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.94  E-value=0.01  Score=37.95  Aligned_cols=83  Identities=17%  Similarity=0.071  Sum_probs=61.3

Q ss_pred             hhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhc---ChhhHHHHHHHHHhCCCCc--cHHHHHHHHHHHhcCCCHHHHH
Q 045498           56 LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ---GRFSAMALLQTLERDKYEL--NIEVYSLVIDGLCRVGRWEEAR  130 (207)
Q Consensus        56 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~a~  130 (207)
                      ...+.+-|.+....+. ++..+.-.+-.++++.+   +.+++..++++..+.+ .|  ....+..+--++.+.|++++|.
T Consensus        14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence            4556666666666553 67777777777888877   5668999999988765 23  3455566666779999999999


Q ss_pred             HHHHHHHhCC
Q 045498          131 KKLDQLSEKG  140 (207)
Q Consensus       131 ~~~~~~~~~g  140 (207)
                      +.++.+.+..
T Consensus        92 ~y~~~lL~ie  101 (152)
T 1pc2_A           92 KYVRGLLQTE  101 (152)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhcC
Confidence            9999998873

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.89  E-value=0.0077  Score=35.79  Aligned_cols=72  Identities=13%  Similarity=0.029  Sum_probs=55.5

Q ss_pred             ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 045498          108 LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG------LVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDST  181 (207)
Q Consensus       108 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~  181 (207)
                      .+...+..+...+.+.++++.|...++...+.-      -.+....+..+..++.+.|+++.|...+++..  ...|+..
T Consensus         3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al--~l~P~~~   80 (104)
T 2v5f_A            3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL--ELDPEHQ   80 (104)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCH
T ss_pred             CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH--hcCCCCH
Confidence            456677888889999999999999998776531      12356778889999999999999999988763  4566543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.76  E-value=0.03  Score=32.56  Aligned_cols=66  Identities=14%  Similarity=0.006  Sum_probs=40.1

Q ss_pred             cchhhHHHHHhhHhhhcC---hhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 045498           73 AELVTYNPLIHDNWEKQG---RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK  139 (207)
Q Consensus        73 ~~~~~~~~ll~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  139 (207)
                      .+...+..+-.++...++   .++|..++++..+... -+......+-..+.+.|++++|...|+.+.+.
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp-~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP-YNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            344455555555544333   4667777776666542 25566666666677777777777777777665

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.51  E-value=0.051  Score=32.12  Aligned_cols=68  Identities=10%  Similarity=0.029  Sum_probs=56.0

Q ss_pred             cchhhHHHHHhhHhhhcChhhHHHHHHHHHhCC------CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC
Q 045498           73 AELVTYNPLIHDNWEKQGRFSAMALLQTLERDK------YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG  140 (207)
Q Consensus        73 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g  140 (207)
                      .+..-+-.+-..+...+++..|...++...+..      -.+...++..+..++.+.|+++.|...+++..+..
T Consensus         3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~   76 (104)
T 2v5f_A            3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (104)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            355566778889999999999999999876531      13467789999999999999999999999998863

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.51  E-value=0.073  Score=33.89  Aligned_cols=104  Identities=12%  Similarity=0.034  Sum_probs=56.3

Q ss_pred             CccHHhHHHHHHHHHhcCCh------hHHHHHHHHHHhCCCCcchh-hHHHHHhhH------hhhcChhhHHHHHHHHHh
Q 045498           37 CLDVFVYSSLINGLCTFNRL------KEAVELFDKMVAQGITAELV-TYNPLIHDN------WEKQGRFSAMALLQTLER  103 (207)
Q Consensus        37 ~~~~~~~~~ll~~~~~~~~~------~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~------~~~~~~~~a~~~~~~m~~  103 (207)
                      +.|..+|-..+...-+.|++      ++.+++|++.... ++|+.. .|..-+..+      ...++.++|.++|+.+.+
T Consensus        10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~   88 (161)
T 4h7y_A           10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA   88 (161)
T ss_dssp             CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            34667777777777777888      7778888877664 455531 111111111      122555556666655544


Q ss_pred             CCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC
Q 045498          104 DKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV  142 (207)
Q Consensus       104 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~  142 (207)
                      ..-.. ...|-....--.+.|+++.|.+++......+.+
T Consensus        89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k  126 (161)
T 4h7y_A           89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV  126 (161)
T ss_dssp             HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred             HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence            32222 334444444445556666666666655555544

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.42  E-value=0.098  Score=34.34  Aligned_cols=129  Identities=13%  Similarity=0.156  Sum_probs=89.1

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCH
Q 045498           47 INGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW  126 (207)
Q Consensus        47 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~  126 (207)
                      .....+.|+++.|.++.+++      .+...|..|-......|+++-|.+.|.....         +..+.--|.-.|+.
T Consensus        12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~   76 (177)
T 3mkq_B           12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV   76 (177)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred             HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence            44566789999999988766      3678899999999999999999999987552         34555556667887


Q ss_pred             HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498          127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK  205 (207)
Q Consensus       127 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  205 (207)
                      ++..++-+.....|      -++.....+.-.|+++++.++|.+...   .|-      -.......|..+.|.++.++
T Consensus        77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~e------A~~~A~t~g~~~~a~~~~~~  140 (177)
T 3mkq_B           77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPL------AYAVAKANGDEAAASAFLEQ  140 (177)
T ss_dssp             HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHH------HHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHH------HHHHHHHcCcHHHHHHHHHH
Confidence            77777766665554      356666677788999999999865432   121      11112235566667666654

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.41  E-value=0.098  Score=34.32  Aligned_cols=129  Identities=10%  Similarity=0.056  Sum_probs=89.4

Q ss_pred             HhhhhhhhHHHHHHcC-CCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHH
Q 045498           20 NGMCKIREIDSAIKKG-ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALL   98 (207)
Q Consensus        20 ~~~~~~g~~~~a~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~   98 (207)
                      ......|+++.|.+.. .--+...|..|-....+.|+++-|.+.|.+...         +..+.-.|...|+.+....+-
T Consensus        13 ~LAL~lg~l~~A~e~a~~l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla   83 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ   83 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence            3445678888887211 114678899999999999999999999987743         556666777888888877666


Q ss_pred             HHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045498           99 QTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMK  172 (207)
Q Consensus        99 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  172 (207)
                      +.-...|      -++....++.-.|+++++.+++.+..+   -|      .-+......|..+.|.++.+.+.
T Consensus        84 ~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~------eA~~~A~t~g~~~~a~~~~~~~~  142 (177)
T 3mkq_B           84 NIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LP------LAYAVAKANGDEAAASAFLEQAE  142 (177)
T ss_dssp             HHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HH------HHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             HHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hH------HHHHHHHHcCcHHHHHHHHHHhC
Confidence            6555554      246666677788999999999865332   12      11112233667788888877653

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.40  E-value=0.077  Score=43.11  Aligned_cols=128  Identities=12%  Similarity=0.058  Sum_probs=78.9

Q ss_pred             HHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcC-hhhHHHHHHHHHhC------CCCc-cH---
Q 045498           43 YSSLINGLCTFNR-LKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG-RFSAMALLQTLERD------KYEL-NI---  110 (207)
Q Consensus        43 ~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~------~~~~-~~---  110 (207)
                      ...++..+...++ .+.|..+|+++.+.....+......++..+...++ --+|.+++.+..+.      ...+ +.   
T Consensus       251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~  330 (754)
T 4gns_B          251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA  330 (754)
T ss_dssp             HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred             HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence            3445555555666 58899999999887422222222333333333322 22345555443321      1111 11   


Q ss_pred             -------HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045498          111 -------EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQM  171 (207)
Q Consensus       111 -------~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  171 (207)
                             ...+.=.+-+...|+++.|+++-++....-+ -+..+|..|..+|...|+++.|+-.++.+
T Consensus       331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aP-seF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELAL-DSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence                   1222223456678999999999999888732 25789999999999999999999999876

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.37  E-value=0.076  Score=32.72  Aligned_cols=66  Identities=15%  Similarity=-0.024  Sum_probs=32.6

Q ss_pred             ccHHHHHHHHHHHhcCCCHHH---HHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498          108 LNIEVYSLVIDGLCRVGRWEE---ARKKLDQLSEKGLVP--GVVTYNILINGLCKKGMIMEADKLLVQMKEK  174 (207)
Q Consensus       108 ~~~~~~~~li~~~~~~~~~~~---a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  174 (207)
                      ++..+-..+..++.+..+...   +..+++.+.+.+ .|  .......|.-++.+.|++++|.+.++.+.+.
T Consensus        33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~  103 (126)
T 1nzn_A           33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT  103 (126)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            344444444455555554433   555555554442 11  2333344445555666666666666665554

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.30  E-value=0.1  Score=33.28  Aligned_cols=111  Identities=9%  Similarity=0.018  Sum_probs=74.9

Q ss_pred             chhhHHHHHhhHhhhcCh------hhHHHHHHHHHhCCCCccHH----------HHHHHHHHHhcCCCHHHHHHHHHHHH
Q 045498           74 ELVTYNPLIHDNWEKQGR------FSAMALLQTLERDKYELNIE----------VYSLVIDGLCRVGRWEEARKKLDQLS  137 (207)
Q Consensus        74 ~~~~~~~ll~~~~~~~~~------~~a~~~~~~m~~~~~~~~~~----------~~~~li~~~~~~~~~~~a~~~~~~~~  137 (207)
                      |..+|-..+...-+.|++      ++..++|++.... ++|+..          ...++.   ...++.++|.++|+.+.
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~---~ei~D~d~aR~vy~~a~   87 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAEL---KAIQEPDDARDYFQMAR   87 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHH---HHHHCGGGCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHH---HHhcCHHHHHHHHHHHH
Confidence            455666666666666766      6777777776654 444321          112222   33489999999999998


Q ss_pred             hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 045498          138 EKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF  190 (207)
Q Consensus       138 ~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~  190 (207)
                      +.+-+. ...|......-.+.|++..|.+++......+..|. ..+...++-+
T Consensus        88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~-~~le~a~~nl  138 (161)
T 4h7y_A           88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL-EMLEIALRNL  138 (161)
T ss_dssp             HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH-HHHHHHHHHH
T ss_pred             HHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH-HHHHHHHHhh
Confidence            764343 66777777778899999999999999998765544 4455555543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.23  E-value=0.082  Score=37.70  Aligned_cols=94  Identities=13%  Similarity=0.039  Sum_probs=71.3

Q ss_pred             hhHHHHHHHHHhCCCC-ccHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-CCHHHH
Q 045498           92 FSAMALLQTLERDKYE-LNIEVYSLVIDGLCR-----VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKK-GMIMEA  164 (207)
Q Consensus        92 ~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~-----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-~~~~~a  164 (207)
                      ..|...+++..+.... .+...|..+...|.+     -|+.++|.+.|++..+.+..-+..++......+++. |+.+++
T Consensus       180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a  259 (301)
T 3u64_A          180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF  259 (301)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred             HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence            4577777776665422 135678888888888     499999999999999985433478888888999885 999999


Q ss_pred             HHHHHHHHHcCCC--CChhhHHH
Q 045498          165 DKLLVQMKEKGCF--PDSTSFNT  185 (207)
Q Consensus       165 ~~~~~~m~~~~~~--p~~~~~~~  185 (207)
                      ...+++.......  |+....+.
T Consensus       260 ~~~L~kAL~a~p~~~P~~~lan~  282 (301)
T 3u64_A          260 DEALDRALAIDPESVPHNKLLVI  282 (301)
T ss_dssp             HHHHHHHHHCCGGGCSSCHHHHH
T ss_pred             HHHHHHHHcCCCCCCCChhHHHH
Confidence            9999999988655  55444433

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.17  E-value=0.088  Score=32.45  Aligned_cols=93  Identities=17%  Similarity=0.092  Sum_probs=62.8

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhh---HHHHHHHHHhCCCC-ccHHHHHHHHHHHhc
Q 045498           47 INGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFS---AMALLQTLERDKYE-LNIEVYSLVIDGLCR  122 (207)
Q Consensus        47 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~m~~~~~~-~~~~~~~~li~~~~~  122 (207)
                      +..-........+.+-|.+....|. ++..+--.+-+++.+..+...   ++.+++.+.+.+.+ -...-...+.-++.|
T Consensus         8 l~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk   86 (126)
T 1nzn_A            8 LNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR   86 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HhccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence            3333344445566666666655553 666666666777887776665   88888888776521 133445566678899


Q ss_pred             CCCHHHHHHHHHHHHhCC
Q 045498          123 VGRWEEARKKLDQLSEKG  140 (207)
Q Consensus       123 ~~~~~~a~~~~~~~~~~g  140 (207)
                      .|++++|.+.++.+.+..
T Consensus        87 lg~Y~~A~~~~~~lL~~e  104 (126)
T 1nzn_A           87 LKEYEKALKYVRGLLQTE  104 (126)
T ss_dssp             TTCHHHHHHHHHHHHHHC
T ss_pred             hhhHHHHHHHHHHHHHhC
Confidence            999999999999998873

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.09  E-value=0.14  Score=41.68  Aligned_cols=125  Identities=17%  Similarity=0.030  Sum_probs=78.9

Q ss_pred             HHHHhhHhhhcC-hhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhC------CCCC-Ch----
Q 045498           79 NPLIHDNWEKQG-RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR-WEEARKKLDQLSEK------GLVP-GV----  145 (207)
Q Consensus        79 ~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~------g~~~-~~----  145 (207)
                      ..+++.+...++ .+.|..+++++.+.....+......++..+.+.++ --+|.+++.+..+.      ...+ +.    
T Consensus       252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~  331 (754)
T 4gns_B          252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR  331 (754)
T ss_dssp             HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred             HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence            345555555666 57799999999887533333333344444444432 22344444433321      1111 11    


Q ss_pred             ------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498          146 ------VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPD-STSFNTVIQGFLVKNETDRASSFLKK  205 (207)
Q Consensus       146 ------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~  205 (207)
                            ...+.-...+...|+++.|+.+-++....  .|+ -.+|..|..+|...|+++.|+-.++-
T Consensus       332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNS  396 (754)
T 4gns_B          332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINS  396 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence                  11222245566789999999999998876  454 68999999999999999999987764

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.76  E-value=0.096  Score=39.12  Aligned_cols=72  Identities=15%  Similarity=0.038  Sum_probs=58.7

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhhHHH
Q 045498          113 YSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE-----KGCFPDSTSFNT  185 (207)
Q Consensus       113 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~~  185 (207)
                      ...++..+...|+++++...++.+.... +.+...+..+|.++.+.|+..+|...|+.+.+     .|+.|+..+-..
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l  250 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL  250 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence            3456677788999999999888887764 34788999999999999999999999998764     499998875443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=95.55  E-value=0.34  Score=34.63  Aligned_cols=96  Identities=18%  Similarity=0.086  Sum_probs=72.0

Q ss_pred             hhHHHHHHHHHHhCCCC-cchhhHHHHHhhHhh-----hcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcC-CCHHH
Q 045498           56 LKEAVELFDKMVAQGIT-AELVTYNPLIHDNWE-----KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV-GRWEE  128 (207)
Q Consensus        56 ~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-~~~~~  128 (207)
                      ...|...+++..+.... .+...|..+...|..     -|+.++|.+.|++..+.+..-+..++......+++. |+.++
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~  258 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG  258 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence            45667777777765311 135678888888888     499999999999998875432477788888889885 99999


Q ss_pred             HHHHHHHHHhCCCC--CChhhHHHH
Q 045498          129 ARKKLDQLSEKGLV--PGVVTYNIL  151 (207)
Q Consensus       129 a~~~~~~~~~~g~~--~~~~~~~~l  151 (207)
                      +.+.+++.......  |+....+.+
T Consensus       259 a~~~L~kAL~a~p~~~P~~~lan~~  283 (301)
T 3u64_A          259 FDEALDRALAIDPESVPHNKLLVIL  283 (301)
T ss_dssp             HHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCChhHHHHH
Confidence            99999999998766  665544443

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=95.52  E-value=0.17  Score=29.71  Aligned_cols=50  Identities=12%  Similarity=0.143  Sum_probs=32.5

Q ss_pred             ChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 045498           90 GRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK  139 (207)
Q Consensus        90 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  139 (207)
                      +.-++.+-+..+...++.|++.+..+.+++|-|.+++..|.++++-.+.+
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K   74 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK   74 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            34455666666666666667667777777777777777777776666554

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.50  E-value=0.1  Score=38.99  Aligned_cols=74  Identities=12%  Similarity=0.118  Sum_probs=52.9

Q ss_pred             hHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-----CCCCCChhhHHHH
Q 045498           77 TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSE-----KGLVPGVVTYNIL  151 (207)
Q Consensus        77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~~~~l  151 (207)
                      +...++..+...|+++++...+..+.... +.+...+..+|.++.+.|+..+|.+.|+...+     .|+.|...+-...
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~  251 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN  251 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            34556677777888888888777776654 44777888888888888888888888877643     4777776654433

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=95.21  E-value=0.3  Score=30.64  Aligned_cols=141  Identities=10%  Similarity=0.055  Sum_probs=71.6

Q ss_pred             HHHHHHH--HHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 045498           43 YSSLING--LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL  120 (207)
Q Consensus        43 ~~~ll~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  120 (207)
                      ...|+.+  +.-.|..++..++..+..++.   +..-||=.|--....-+-+-..++++..-+.   .|          .
T Consensus         8 ~kkLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------i   71 (172)
T 1wy6_A            8 IRKLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------L   71 (172)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------G
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cC----------c
Confidence            3344443  334577777777777766543   2333333333333333333444444433221   11          1


Q ss_pred             hcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHH
Q 045498          121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRAS  200 (207)
Q Consensus       121 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~  200 (207)
                      ..+|++..+...+-.+-     .+....+..+......|+-++..+++.++.. +.+|++.....+..+|.+.|+..++.
T Consensus        72 s~C~NlKrVi~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~  145 (172)
T 1wy6_A           72 DKCQNLKSVVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDAT  145 (172)
T ss_dssp             GGCSCTHHHHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhhhcHHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHH
Confidence            23444444444443322     1444555666666666666666666666433 23556666666666666666666666


Q ss_pred             HHHHh
Q 045498          201 SFLKK  205 (207)
Q Consensus       201 ~~~~~  205 (207)
                      +++++
T Consensus       146 eLl~~  150 (172)
T 1wy6_A          146 TLLIE  150 (172)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=94.50  E-value=1.6  Score=37.52  Aligned_cols=183  Identities=15%  Similarity=0.126  Sum_probs=111.5

Q ss_pred             HHHhhhhhhhHHHHH--HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc----------------------
Q 045498           18 RINGMCKIREIDSAI--KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITA----------------------   73 (207)
Q Consensus        18 ll~~~~~~g~~~~a~--~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~----------------------   73 (207)
                      ++..+.+.+..+.+.  ..-.+.++..--.+-.++...|++++|.+.|.+... |+..                      
T Consensus       818 l~~~l~~~~~~~~~~~l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~~~~  896 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHHQN  896 (1139)
T ss_dssp             HHHHHHHHSCTTHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTTSCC
T ss_pred             HHHHHHHhhhHHHHHHHhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccccccc
Confidence            444455555555554  223344555555667788899999999999976521 1100                      


Q ss_pred             -chhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCC--cc--HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhH
Q 045498           74 -ELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYE--LN--IEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTY  148 (207)
Q Consensus        74 -~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~  148 (207)
                       -..-|.-++..+-+.+.++.+.++-....+...+  ++  ...|..+.+++...|++++|...+-.+.....  -....
T Consensus       897 ~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cL  974 (1139)
T 4fhn_B          897 LLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCL  974 (1139)
T ss_dssp             SSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHH
Confidence             1123566777777888888877776655443211  11  23678889999999999999998888876543  34567


Q ss_pred             HHHHHHHHhcCCHHH------------HHHHHHHHHH-c-CCCCChhhHHHHHHHHHhcCchhHHHHHH
Q 045498          149 NILINGLCKKGMIME------------ADKLLVQMKE-K-GCFPDSTSFNTVIQGFLVKNETDRASSFL  203 (207)
Q Consensus       149 ~~li~~~~~~~~~~~------------a~~~~~~m~~-~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~  203 (207)
                      ..|+...|..|..+.            +.+++...-+ . .....+.-|..|-..+...|++.+|..++
T Consensus       975 r~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vm 1043 (1139)
T 4fhn_B          975 LDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAII 1043 (1139)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHH
Confidence            777777776655443            4444432221 1 11112233555666667888887776654

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=94.47  E-value=0.41  Score=29.79  Aligned_cols=61  Identities=15%  Similarity=0.178  Sum_probs=36.4

Q ss_pred             hhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 045498           91 RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI  152 (207)
Q Consensus        91 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li  152 (207)
                      .-+..+-++.+...++.|++.+..+.+++|-|.+++..|.++++-.+.+- .+...+|..++
T Consensus        69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l  129 (152)
T 2y69_E           69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI  129 (152)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence            33455556666666666677777777777777777777777776665542 22333454444

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=93.84  E-value=9e-06  Score=61.61  Aligned_cols=78  Identities=15%  Similarity=0.075  Sum_probs=36.4

Q ss_pred             hhHHHHHhhhhhhhHHHHHHcCCCc-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChh
Q 045498           14 VYGIRINGMCKIREIDSAIKKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF   92 (207)
Q Consensus        14 ~~~~ll~~~~~~g~~~~a~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~   92 (207)
                      +|..+..+..+.+++.+|+++-++. |+..|..++.++.+.|++++-.+.+...++.  .-++.+=+.|+-+|++.++..
T Consensus        56 VWs~LgkAqL~~~~v~eAIdsyIkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~  133 (624)
T 3lvg_A           56 VWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLA  133 (624)
T ss_dssp             CSSSHHHHTTTSSSCTTTTTSSCCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSS
T ss_pred             HHHHHHHHHHccCchHHHHHHHHhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHH
Confidence            3444445555555555555333322 3444555555555555555555555433322  223334445555555555544


Q ss_pred             h
Q 045498           93 S   93 (207)
Q Consensus        93 ~   93 (207)
                      +
T Consensus       134 e  134 (624)
T 3lvg_A          134 E  134 (624)
T ss_dssp             T
T ss_pred             H
Confidence            3

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=93.51  E-value=0.64  Score=27.37  Aligned_cols=78  Identities=19%  Similarity=0.171  Sum_probs=59.2

Q ss_pred             HHHHHHHHH-hcCC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 045498          112 VYSLVIDGL-CRVG-RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG  189 (207)
Q Consensus       112 ~~~~li~~~-~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~  189 (207)
                      -|.+--..| .+.. +.-++.+-+..+....+.|++....+.+++|-+.+++..|.++|+-.+.. +.+...+|..+++-
T Consensus        10 eF~aRy~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqE   88 (109)
T 1v54_E           10 EFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE   88 (109)
T ss_dssp             HHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHH
Confidence            344433333 3444 56677888888888899999999999999999999999999999998866 34445668777764


Q ss_pred             H
Q 045498          190 F  190 (207)
Q Consensus       190 ~  190 (207)
                      .
T Consensus        89 l   89 (109)
T 1v54_E           89 L   89 (109)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=92.19  E-value=1.3  Score=27.60  Aligned_cols=70  Identities=21%  Similarity=0.225  Sum_probs=55.7

Q ss_pred             HhcCC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 045498          120 LCRVG-RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF  190 (207)
Q Consensus       120 ~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~  190 (207)
                      |.+.. |.-+..+-+..+....+.|++....+.+++|-+.+++..|.++|+-.+.. +.+...+|..+++-.
T Consensus        62 F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqEl  132 (152)
T 2y69_E           62 FNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL  132 (152)
T ss_dssp             HTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred             cCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHH
Confidence            33444 45567777788888889999999999999999999999999999998866 445566788777653

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=91.84  E-value=1.4  Score=27.30  Aligned_cols=68  Identities=16%  Similarity=0.019  Sum_probs=36.1

Q ss_pred             CccHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498          107 ELNIEVYSLVIDGLCRVGR---WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK  174 (207)
Q Consensus       107 ~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  174 (207)
                      .|+..+--...-++.+..+   ..++..+++.+.+.+..-.....--|.-++.+.|++++|.+..+.+.+.
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~  107 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  107 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            4444444444445554443   3345556655555432223444555556666666666666666666654

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=91.81  E-value=1.3  Score=28.67  Aligned_cols=115  Identities=10%  Similarity=-0.027  Sum_probs=53.8

Q ss_pred             HHHHHhhHhhhcChhhHHHHHHHHHhCC-CCcc-------HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC--CCCChhh
Q 045498           78 YNPLIHDNWEKQGRFSAMALLQTLERDK-YELN-------IEVYSLVIDGLCRVGRWEEARKKLDQLSEKG--LVPGVVT  147 (207)
Q Consensus        78 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~  147 (207)
                      +-.-++.+...+.++.|+-+.+.+.... ..|+       ..++..+.+++...+++..|...|++.....  +.-+..+
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~  102 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV  102 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            3344555666666666666665543321 1122       1244455566666666666666666643221  0001101


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498          148 YNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK  205 (207)
Q Consensus       148 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  205 (207)
                      ...+ .   .......         ......+...-.-+..||.+.+++++|+.+++.
T Consensus       103 ~~~~-~---~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~  147 (167)
T 3ffl_A          103 RPST-G---NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG  147 (167)
T ss_dssp             ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccc-c---ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence            1100 0   0000000         001112233444478899999999999998764

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=91.74  E-value=1.5  Score=27.24  Aligned_cols=70  Identities=14%  Similarity=0.136  Sum_probs=47.2

Q ss_pred             CCcchhhHHHHHhhHhhhcCh---hhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC
Q 045498           71 ITAELVTYNPLIHDNWEKQGR---FSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG  140 (207)
Q Consensus        71 ~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g  140 (207)
                      -.|+..+--.+.+++.+..+.   .+++.+++++.+.+..-....+.-+.-++.|.|+++.|.+..+.+.+..
T Consensus        36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e  108 (134)
T 3o48_A           36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE  108 (134)
T ss_dssp             GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred             CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence            345555555555566666544   4577888887776532234555666678888999999999998888763

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=91.06  E-value=1.9  Score=27.16  Aligned_cols=120  Identities=17%  Similarity=0.059  Sum_probs=68.9

Q ss_pred             cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHH
Q 045498           39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID  118 (207)
Q Consensus        39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  118 (207)
                      +..-||-+|.-....-+-+-..++++..-+.   .|.          ...++...+...+-.+-     .+...++..++
T Consensus        38 ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~C~~~~n-----~~se~vd~ALd   99 (172)
T 1wy6_A           38 TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVECGVINN-----TLNEHVNKALD   99 (172)
T ss_dssp             CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHHHHHHTT-----CCCHHHHHHHH
T ss_pred             CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHHHHHHhc-----chHHHHHHHHH
Confidence            4445666666666667777777777666432   121          11223323322222111     13344566667


Q ss_pred             HHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 045498          119 GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCF  177 (207)
Q Consensus       119 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  177 (207)
                      .+...|+-+.-.+++..+.. +..|++...-.+..+|.+.|+..++.+++.+.=+.|++
T Consensus       100 ~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k  157 (172)
T 1wy6_A          100 ILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  157 (172)
T ss_dssp             HHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence            77777777777777776533 23456666777777777777777777777777666653

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=91.03  E-value=7.1  Score=33.70  Aligned_cols=147  Identities=10%  Similarity=0.081  Sum_probs=94.3

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCC-------------------
Q 045498           46 LINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKY-------------------  106 (207)
Q Consensus        46 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-------------------  106 (207)
                      ++..+.+.++.+.+.++....     +.++..--.+-.++...|++++|.+.|.+... |+                   
T Consensus       818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~  891 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK  891 (1139)
T ss_dssp             HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHT
T ss_pred             HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccc
Confidence            444555566666555543322     22333334555677888999999999976421 11                   


Q ss_pred             ----CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 045498          107 ----ELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG----VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP  178 (207)
Q Consensus       107 ----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p  178 (207)
                          ..-..=|..++..|.+.+.++.+.++-+...+....-+    ...|..+.+.+...|++++|...+-.+.....  
T Consensus       892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--  969 (1139)
T 4fhn_B          892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--  969 (1139)
T ss_dssp             TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred             ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence                00112356777888888888888888776665422111    12577888899999999999998887766533  


Q ss_pred             ChhhHHHHHHHHHhcCchhHHH
Q 045498          179 DSTSFNTVIQGFLVKNETDRAS  200 (207)
Q Consensus       179 ~~~~~~~l~~~~~~~~~~~~a~  200 (207)
                      -...+..|+..++..|..+.-.
T Consensus       970 r~~cLr~LV~~lce~~~~~~L~  991 (1139)
T 4fhn_B          970 KKSCLLDFVNQLTKQGKINQLL  991 (1139)
T ss_dssp             CHHHHHHHHHHHHHHCCHHHHH
T ss_pred             HHHHHHHHHHHHHhCCChhhhh
Confidence            3456777888788777766543

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.88  E-value=5.1  Score=30.28  Aligned_cols=97  Identities=16%  Similarity=-0.034  Sum_probs=70.1

Q ss_pred             hhHHHHHhhHhhhcChhhHHHHHHHHHhCC--CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC---CCCCChh----
Q 045498           76 VTYNPLIHDNWEKQGRFSAMALLQTLERDK--YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK---GLVPGVV----  146 (207)
Q Consensus        76 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~----  146 (207)
                      .+...+...+.+.|+.+.|.+.+.++....  ...-...+-..++.+...+++..+...+.+....   +-.|+..    
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk  211 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK  211 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence            467888999999999999999999987653  2334677888899999999999999998877543   3223322    


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498          147 TYNILINGLCKKGMIMEADKLLVQMKEK  174 (207)
Q Consensus       147 ~~~~li~~~~~~~~~~~a~~~~~~m~~~  174 (207)
                      .|..+  .+...+++..|...|-+....
T Consensus       212 ~~~gl--~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          212 TYYGI--HCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             HHHHH--GGGGTSCHHHHHHHHHHHHHH
T ss_pred             HHHHH--HHHHhChHHHHHHHHHHHhcc
Confidence            12222  234578899888888776543

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=89.79  E-value=1.9  Score=25.26  Aligned_cols=89  Identities=19%  Similarity=0.202  Sum_probs=62.7

Q ss_pred             hhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 045498           87 EKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK  166 (207)
Q Consensus        87 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~  166 (207)
                      .....++|..|-+.+...+.  ...+--+-+..+...|++++|..+.+...    .||...|-+|..  .+.|.-+++..
T Consensus        18 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~   89 (115)
T 2uwj_G           18 GQHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDR   89 (115)
T ss_dssp             TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHH
Confidence            34567888888888887763  33333444677889999999988766443    688888877765  57888888888


Q ss_pred             HHHHHHHcCCCCChhhHH
Q 045498          167 LLVQMKEKGCFPDSTSFN  184 (207)
Q Consensus       167 ~~~~m~~~~~~p~~~~~~  184 (207)
                      -+.++...| .|....|.
T Consensus        90 rL~~la~sg-~p~~q~Fa  106 (115)
T 2uwj_G           90 RLAGLGGSS-DPALADFA  106 (115)
T ss_dssp             HHHHHHTCS-SHHHHHHH
T ss_pred             HHHHHHhCC-CHHHHHHH
Confidence            887877765 34444443

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.76  E-value=5.3  Score=30.22  Aligned_cols=99  Identities=11%  Similarity=0.012  Sum_probs=69.6

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CcchhhHHHHHhhHhhhcChhhHHHHHHHHHhC---CCCccHHHH--
Q 045498           41 FVYSSLINGLCTFNRLKEAVELFDKMVAQGI--TAELVTYNPLIHDNWEKQGRFSAMALLQTLERD---KYELNIEVY--  113 (207)
Q Consensus        41 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~--  113 (207)
                      .+...+...|.+.|++++|.+.|.++...-.  ..-...+-..+..+...+++..+...+.+....   +..|+...-  
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk  211 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK  211 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence            3677788999999999999999999986432  233456777889999999999999999886533   323332211  


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhC
Q 045498          114 SLVIDGLCRVGRWEEARKKLDQLSEK  139 (207)
Q Consensus       114 ~~li~~~~~~~~~~~a~~~~~~~~~~  139 (207)
                      ..-...+...+++..|.+.|-+....
T Consensus       212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          212 TYYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence            11122345678899998888766543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=89.53  E-value=2.1  Score=27.71  Aligned_cols=60  Identities=7%  Similarity=-0.054  Sum_probs=34.3

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCcch-------hhHHHHHhhHhhhcChhhHHHHHHHH
Q 045498           42 VYSSLINGLCTFNRLKEAVELFDKMVAQ-GITAEL-------VTYNPLIHDNWEKQGRFSAMALLQTL  101 (207)
Q Consensus        42 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~m  101 (207)
                      .+-.-+..+...+.++.|+-+.+.+... +..|+.       .++..+-.++...+++..|...|++.
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA   89 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA   89 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            3444556666677777777666665432 111221       13445556667777777777777764

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=89.44  E-value=2.1  Score=25.16  Aligned_cols=89  Identities=15%  Similarity=0.158  Sum_probs=62.2

Q ss_pred             hhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 045498           87 EKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADK  166 (207)
Q Consensus        87 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~  166 (207)
                      .....++|..|-+.+...+.  ...+--+-+..+...|++++|..+.+...    .||...|-+|..  .+.|.-+++..
T Consensus        19 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~   90 (116)
T 2p58_C           19 GNHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALES   90 (116)
T ss_dssp             TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHH
Confidence            34567888888888887763  33333444677889999999988876544    688888877765  46788888888


Q ss_pred             HHHHHHHcCCCCChhhHH
Q 045498          167 LLVQMKEKGCFPDSTSFN  184 (207)
Q Consensus       167 ~~~~m~~~~~~p~~~~~~  184 (207)
                      -+.++...| .|....|.
T Consensus        91 rL~~la~sg-~p~~q~Fa  107 (116)
T 2p58_C           91 RLNRLARSQ-DPRIQTFV  107 (116)
T ss_dssp             HHHHHTTCC-CHHHHHHH
T ss_pred             HHHHHHhCC-CHHHHHHH
Confidence            887776664 34444443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=89.34  E-value=2.8  Score=26.41  Aligned_cols=67  Identities=16%  Similarity=0.020  Sum_probs=29.3

Q ss_pred             ccHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498          108 LNIEVYSLVIDGLCRVGR---WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK  174 (207)
Q Consensus       108 ~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  174 (207)
                      |+..+--....++.+..+   ..++..+++.+.+.+..-.......|.-++.+.|++++|.++.+.+.+.
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~  106 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  106 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            344444444444444433   2234444444444322212333344445555555555555555555543

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=88.56  E-value=3.4  Score=29.09  Aligned_cols=116  Identities=10%  Similarity=-0.003  Sum_probs=75.5

Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCC--ccHHHHHHHHHHHhcCCC
Q 045498           48 NGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYE--LNIEVYSLVIDGLCRVGR  125 (207)
Q Consensus        48 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~~~  125 (207)
                      ....+.|++++++.....-.+.. |-|...=..++..+|-.|++++|..-++...+....  |....|..+|.+      
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------   77 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------   77 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH------
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH------
Confidence            34567889999998888887775 567777778889999999999999888887765422  233455555544      


Q ss_pred             HHHHHHHHHHHHhCCCCC-----ChhhHHHHHHHHH--hcCCHHHHHHHHHHHHHc
Q 045498          126 WEEARKKLDQLSEKGLVP-----GVVTYNILINGLC--KKGMIMEADKLLVQMKEK  174 (207)
Q Consensus       126 ~~~a~~~~~~~~~~g~~~-----~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~  174 (207)
                          +..=.+....+-.|     ...-...++.+..  ..|+.++|..+-....+.
T Consensus        78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~  129 (273)
T 1zbp_A           78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  129 (273)
T ss_dssp             ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence                22222233332222     2233445555544  458999999888887654

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=87.97  E-value=5.4  Score=28.10  Aligned_cols=110  Identities=15%  Similarity=0.177  Sum_probs=70.4

Q ss_pred             hhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhc
Q 045498           83 HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV----VTYNILINGLCKK  158 (207)
Q Consensus        83 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~  158 (207)
                      ....+.|+.++++.....-.+.. +-|...-..++.-+|-.|+|++|.+-++...+.  .|+.    ..|..+|.+    
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~a----   77 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKA----   77 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHH----
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHH----
Confidence            45667889999998888877775 447778888899999999999999988888776  3332    233333332    


Q ss_pred             CCHHHHHHHHHHHHHcCCCC-----ChhhHHHHHHHHH--hcCchhHHHHHHHh
Q 045498          159 GMIMEADKLLVQMKEKGCFP-----DSTSFNTVIQGFL--VKNETDRASSFLKK  205 (207)
Q Consensus       159 ~~~~~a~~~~~~m~~~~~~p-----~~~~~~~l~~~~~--~~~~~~~a~~~~~~  205 (207)
                            +..-.+....+-.|     ...-...|+++..  ..|+.++|.++-.+
T Consensus        78 ------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~  125 (273)
T 1zbp_A           78 ------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQ  125 (273)
T ss_dssp             ------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             ------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence                  22222333332222     2334555666554  45888888776554

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=87.14  E-value=4  Score=25.68  Aligned_cols=69  Identities=14%  Similarity=0.151  Sum_probs=48.0

Q ss_pred             CcchhhHHHHHhhHhhhcChh---hHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC
Q 045498           72 TAELVTYNPLIHDNWEKQGRF---SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG  140 (207)
Q Consensus        72 ~~~~~~~~~ll~~~~~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g  140 (207)
                      .|+..+--..-+++.+..+.+   ++..+++.+.+.+..-...-..-+.-++.|.|++++|.+..+.+.+..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e  107 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE  107 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence            456666555666777766544   577788887775433234445566678889999999999999998873

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.03  E-value=9.7  Score=28.98  Aligned_cols=180  Identities=13%  Similarity=0.123  Sum_probs=110.8

Q ss_pred             hhHHHHH------------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHh----hhc
Q 045498           26 REIDSAI------------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNW----EKQ   89 (207)
Q Consensus        26 g~~~~a~------------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~----~~~   89 (207)
                      |+++.|+            ......+......++..|.+.++|+...+.+..+.+..-... ..-..++..+.    ...
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk-~ai~~~V~~~~~~l~~~~  108 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK-LSIQYMIQKVMEYLKSSK  108 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH-HHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHhcCC
Confidence            6677776            233445677788899999999999999888877654322222 22233333322    223


Q ss_pred             ChhhH--HHHHHHHHh--CC-CCc---cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCCCC---hhhHHHHHHHHH
Q 045498           90 GRFSA--MALLQTLER--DK-YEL---NIEVYSLVIDGLCRVGRWEEARKKLDQLSEK--GLVPG---VVTYNILINGLC  156 (207)
Q Consensus        90 ~~~~a--~~~~~~m~~--~~-~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--g~~~~---~~~~~~li~~~~  156 (207)
                      ..+..  ..+.+.+..  .| +-.   .......+...+...|++.+|.+++..+...  |....   ...+...++.|.
T Consensus       109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l  188 (445)
T 4b4t_P          109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI  188 (445)
T ss_dssp             TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            22221  111111110  01 111   2234456778899999999999999987643  22211   345677788999


Q ss_pred             hcCCHHHHHHHHHHHHH----cCCCCCh--hhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          157 KKGMIMEADKLLVQMKE----KGCFPDS--TSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       157 ~~~~~~~a~~~~~~m~~----~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      ..+++.+|..++.....    ....|+.  .-+...+..+...+++.+|.+.|.+.
T Consensus       189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~  244 (445)
T 4b4t_P          189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI  244 (445)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            99999999999988753    2222222  34666777778888888888877653

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=84.39  E-value=11  Score=28.23  Aligned_cols=132  Identities=12%  Similarity=-0.040  Sum_probs=61.6

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCc---chhhHHHHHhhHhhhc-ChhhHHHHHHHH----HhCC-CCccHH
Q 045498           42 VYSSLINGLCTFNRLKEAVELFDKMVAQ-GITA---ELVTYNPLIHDNWEKQ-GRFSAMALLQTL----ERDK-YELNIE  111 (207)
Q Consensus        42 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~---~~~~~~~ll~~~~~~~-~~~~a~~~~~~m----~~~~-~~~~~~  111 (207)
                      ....|...|.+.|+.++..+++.....- +..|   .......++..+.... ..+.-.++..+.    .... .-....
T Consensus        21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~  100 (394)
T 3txn_A           21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS  100 (394)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556666666666666666555321 0011   1123444555554432 222222222222    2111 000111


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045498          112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG-----VVTYNILINGLCKKGMIMEADKLLVQMKE  173 (207)
Q Consensus       112 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~  173 (207)
                      .=.-+...|...|++.+|.+++..+.+.=-+.|     ...+-.-+..|...+++.++...+.....
T Consensus       101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~  167 (394)
T 3txn_A          101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART  167 (394)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence            122456666677777777666666654311111     22344445666666777777766666543

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=82.85  E-value=5.6  Score=27.91  Aligned_cols=36  Identities=8%  Similarity=0.045  Sum_probs=14.6

Q ss_pred             hhhhhhHHHHH---HcCCCccHHhHHHHHHHHHhcCChh
Q 045498           22 MCKIREIDSAI---KKGICLDVFVYSSLINGLCTFNRLK   57 (207)
Q Consensus        22 ~~~~g~~~~a~---~~~~~~~~~~~~~ll~~~~~~~~~~   57 (207)
                      .+..|+.+-+.   +.|..++...-.+.+...+..|+.+
T Consensus        38 A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~   76 (285)
T 3kea_A           38 AIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTK   76 (285)
T ss_dssp             HHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCH
T ss_pred             HHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            33445554444   4444333222222333344455544

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=82.81  E-value=12  Score=27.37  Aligned_cols=22  Identities=14%  Similarity=0.074  Sum_probs=10.0

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHH
Q 045498          146 VTYNILINGLCKKGMIMEADKL  167 (207)
Q Consensus       146 ~~~~~li~~~~~~~~~~~a~~~  167 (207)
                      .....+...|.+.+++.+|..-
T Consensus       137 ~LH~~ig~~~~~e~~~~~Ae~H  158 (336)
T 3lpz_A          137 ELHHVVGTLYVEEGEFEAAEKH  158 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHccCCHHHHHHH
Confidence            3334444455555554444433

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=82.80  E-value=13  Score=27.85  Aligned_cols=160  Identities=13%  Similarity=-0.038  Sum_probs=96.8

Q ss_pred             hhhHHHHHhhhhhhhHHHHH-----------HcCCCccHHhHHHHHHHHHhcC-ChhHHHHHHHH----HHhCCCC-cch
Q 045498           13 HVYGIRINGMCKIREIDSAI-----------KKGICLDVFVYSSLINGLCTFN-RLKEAVELFDK----MVAQGIT-AEL   75 (207)
Q Consensus        13 ~~~~~ll~~~~~~g~~~~a~-----------~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~----m~~~~~~-~~~   75 (207)
                      .....+...|.+.|+.++..           .-.-.........+++.+.... ..+.-.++..+    ..+..-. ...
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~   99 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ   99 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566778888889888876           1111223455777888887643 33333344333    3332110 011


Q ss_pred             hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCC-----ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCCCChhhH
Q 045498           76 VTYNPLIHDNWEKQGRFSAMALLQTLERDKYE-----LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK--GLVPGVVTY  148 (207)
Q Consensus        76 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~  148 (207)
                      ..=.-+...|...|++.+|..++.++.+.--.     .-..++-.-+..|...+++.++...+......  .+.+++..-
T Consensus       100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~  179 (394)
T 3txn_A          100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ  179 (394)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence            11225788999999999999998887653111     22456777788899999999999998876543  122333222


Q ss_pred             HHH----HHHHH-hcCCHHHHHHHHHHHH
Q 045498          149 NIL----INGLC-KKGMIMEADKLLVQMK  172 (207)
Q Consensus       149 ~~l----i~~~~-~~~~~~~a~~~~~~m~  172 (207)
                      ..+    -..+. ..+++..|...|-+..
T Consensus       180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf  208 (394)
T 3txn_A          180 GALDLQSGILHAADERDFKTAFSYFYEAF  208 (394)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence            111    12334 6788988888776653

>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}

Probab=80.96  E-value=8.2  Score=24.34  Aligned_cols=60  Identities=7%  Similarity=0.103  Sum_probs=34.1

Q ss_pred             HHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC
Q 045498           65 KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR  125 (207)
Q Consensus        65 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~  125 (207)
                      .+.+.|++++.. =..++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|-
T Consensus        17 ~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl   76 (150)
T 2xig_A           17 SIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF   76 (150)
T ss_dssp             HHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred             HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence            355566655532 233444444555566777777777766655666666666666666554

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=80.95  E-value=16  Score=27.75  Aligned_cols=163  Identities=13%  Similarity=0.090  Sum_probs=98.2

Q ss_pred             cccchhhhHHHHHhhhhhhhHHHHH--------HcCCCccHHhHHHHHHHH----HhcCChhHH--HHHHHHHHh--CC-
Q 045498            8 FKGNFHVYGIRINGMCKIREIDSAI--------KKGICLDVFVYSSLINGL----CTFNRLKEA--VELFDKMVA--QG-   70 (207)
Q Consensus         8 ~~p~~~~~~~ll~~~~~~g~~~~a~--------~~~~~~~~~~~~~ll~~~----~~~~~~~~a--~~~~~~m~~--~~-   70 (207)
                      ...+......++..|...|+++...        .+|..+...  ..++..+    ......+..  ..+.+.+..  .| 
T Consensus        52 ~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai--~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~k  129 (445)
T 4b4t_P           52 LASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSI--QYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENK  129 (445)
T ss_dssp             TTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHH--HHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCC
T ss_pred             hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccc
Confidence            3445667888899999999998875        445444332  2333332    223333221  122221111  01 


Q ss_pred             CCc---chhhHHHHHhhHhhhcChhhHHHHHHHHHhC--CCCc---cHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----
Q 045498           71 ITA---ELVTYNPLIHDNWEKQGRFSAMALLQTLERD--KYEL---NIEVYSLVIDGLCRVGRWEEARKKLDQLSE----  138 (207)
Q Consensus        71 ~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----  138 (207)
                      +-.   .......|...+-..|++.+|..++..+...  +...   -...+...++.|...+++..|..++.....    
T Consensus       130 iflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~  209 (445)
T 4b4t_P          130 IFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFK  209 (445)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcc
Confidence            101   1122355778888999999999999987533  2211   145677788899999999999999887642    


Q ss_pred             CCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045498          139 KGLVPG--VVTYNILINGLCKKGMIMEADKLLVQMK  172 (207)
Q Consensus       139 ~g~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~  172 (207)
                      ....|+  ...+...+..+...+++.+|.+.|.+..
T Consensus       210 ~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~  245 (445)
T 4b4t_P          210 NPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY  245 (445)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             cCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            222222  2345666777778888888877777664

>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42

Probab=80.74  E-value=7.8  Score=23.93  Aligned_cols=59  Identities=12%  Similarity=0.119  Sum_probs=31.3

Q ss_pred             HHhCCCCcchhhHHHHHhhHhhhc-ChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC
Q 045498           66 MVAQGITAELVTYNPLIHDNWEKQ-GRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR  125 (207)
Q Consensus        66 m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~  125 (207)
                      +++.|++++.. =..++..+...+ ..-.|.++++.+.+.+...+..|..--+..+...|-
T Consensus         9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl   68 (136)
T 1mzb_A            9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL   68 (136)
T ss_dssp             HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred             HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence            44555555432 223334444444 555677777777666555565555555555555543

>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2

Probab=80.62  E-value=12  Score=25.82  Aligned_cols=90  Identities=19%  Similarity=0.088  Sum_probs=58.6

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhC--CCCc----chhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHH
Q 045498           45 SLINGLCTFNRLKEAVELFDKMVAQ--GITA----ELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID  118 (207)
Q Consensus        45 ~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  118 (207)
                      --++.+....++++|..++++..+.  +.++    +.......++.-.....-.-+..+.+++..   .+........+.
T Consensus        23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~   99 (235)
T 2d2s_A           23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE   99 (235)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence            3567788899999999999887542  2222    112233344444444455556666666643   445666777788


Q ss_pred             HHhcCCCHHHHHHHHHHHH
Q 045498          119 GLCRVGRWEEARKKLDQLS  137 (207)
Q Consensus       119 ~~~~~~~~~~a~~~~~~~~  137 (207)
                      .+.+.|+.++|.++|=+..
T Consensus       100 ~L~rLg~~~~A~~lfL~~r  118 (235)
T 2d2s_A          100 NMIKLGLPEQALDLFLQNR  118 (235)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHCCChhHHHHHHHHHH
Confidence            9999999999999876554

>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*

Probab=80.60  E-value=8.3  Score=24.14  Aligned_cols=60  Identities=8%  Similarity=0.053  Sum_probs=34.8

Q ss_pred             HHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC
Q 045498           65 KMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR  125 (207)
Q Consensus        65 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~  125 (207)
                      .+.+.|++++.. =..++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|-
T Consensus        12 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl   71 (145)
T 2fe3_A           12 TLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL   71 (145)
T ss_dssp             HHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred             HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence            355566655532 233344444455566677777777766655566666666666665554

>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A

Probab=80.49  E-value=6.8  Score=24.91  Aligned_cols=65  Identities=17%  Similarity=0.174  Sum_probs=44.0

Q ss_pred             hHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC--HHHHHHHHHHHHhCCCC
Q 045498           77 TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR--WEEARKKLDQLSEKGLV  142 (207)
Q Consensus        77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~g~~  142 (207)
                      ..+.++.-|...++.++|.+.++++....+. ...+...+..++-+.++  .+.+..++..+.+.|+-
T Consensus        11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i   77 (152)
T 2ion_A           11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI   77 (152)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence            4567888888889999999999888633222 34455566666666432  45677778777776654

>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}

Probab=80.41  E-value=8.6  Score=24.24  Aligned_cols=60  Identities=12%  Similarity=0.177  Sum_probs=27.8

Q ss_pred             HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCc
Q 045498          135 QLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE  195 (207)
Q Consensus       135 ~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~  195 (207)
                      .+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus        17 ~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl   76 (150)
T 2xig_A           17 SIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF   76 (150)
T ss_dssp             HHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred             HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence            344455553332 223333344444445556666666555444455555555555555553

>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A

Probab=80.41  E-value=7.9  Score=23.78  Aligned_cols=65  Identities=17%  Similarity=0.174  Sum_probs=43.1

Q ss_pred             hHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC--HHHHHHHHHHHHhCCCC
Q 045498           77 TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR--WEEARKKLDQLSEKGLV  142 (207)
Q Consensus        77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~g~~  142 (207)
                      ....++.-|...|+.++|.+.++++....+. ...+...+..++-+.++  .+.+..++..+.+.|+-
T Consensus         9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i   75 (129)
T 2nsz_A            9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI   75 (129)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence            3566788888888888888888887633222 33455566666666542  45677777777776654

>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1

Probab=80.12  E-value=1.9  Score=22.50  Aligned_cols=35  Identities=14%  Similarity=0.137  Sum_probs=24.5

Q ss_pred             hhHHHHHHHHHHhCCCCcchhhHHHHHhhH-hhhcC
Q 045498           56 LKEAVELFDKMVAQGITAELVTYNPLIHDN-WEKQG   90 (207)
Q Consensus        56 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~~~   90 (207)
                      .++|.+.|.+|++..-.++..+|...++.+ +...+
T Consensus         2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPr   37 (59)
T 2b7e_A            2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPR   37 (59)
T ss_dssp             TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTH
T ss_pred             hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCc
Confidence            467888888887654455568888888877 55443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	207
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.61
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.59
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.56
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.33
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.33
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.19
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.17
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.16
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.11
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.94
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.9
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.87
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.84
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.84
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.82
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.8
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.8
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.79
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.78
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.77
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.73
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.66
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.65
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.64
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.59
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.45
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.44
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.43
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.37
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.35
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.33
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.33
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.29
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.26
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.25
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.24
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.22
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.18
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.14
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.13
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.97
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.95
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.94
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.82
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.6
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.54
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.53
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.53
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.23
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.22
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.2
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	96.78
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	96.74
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	96.64
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.49
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.32
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	95.26
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	94.57
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	94.35
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	93.35
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	92.69
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	88.43
d1mzba_	134	Ferric uptake regulation protein, FUR {Pseudomonas	85.5
d2nsza1	129	Programmed cell death 4, PDCD4 {Mouse (Mus musculu	83.36
d1mzba_	134	Ferric uptake regulation protein, FUR {Pseudomonas	82.2

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.6e-13  Score=98.65  Aligned_cols=191  Identities=16%  Similarity=-0.026  Sum_probs=154.8

Q ss_pred             hhhhHHHHHhhhhhhhHHHHH---H---cCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhH
Q 045498           12 FHVYGIRINGMCKIREIDSAI---K---KGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN   85 (207)
Q Consensus        12 ~~~~~~ll~~~~~~g~~~~a~---~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~   85 (207)
                      ...+..+...+...|++++|.   .   ...+-+..+|..+...+...|++++|...+++....+ +.+...+..+...+
T Consensus       169 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~  247 (388)
T d1w3ba_         169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVY  247 (388)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             hHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHH
Confidence            356666777777888888877   1   1123356778888899999999999999999988765 44566778888889


Q ss_pred             hhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 045498           86 WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD  165 (207)
Q Consensus        86 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~  165 (207)
                      .+.|++++|...+++..+... -+..++..+...+...|++++|.+.++....... .+...+..+...+.+.|++++|.
T Consensus       248 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~  325 (388)
T d1w3ba_         248 YEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANIKREQGNIEEAV  325 (388)
T ss_dssp             HHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCC-ccchhhhHHHHHHHHCCCHHHHH
Confidence            999999999999999887653 3677888899999999999999999998887643 46778888899999999999999


Q ss_pred             HHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          166 KLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       166 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      ..|++..+.. +-+..++..+..++.+.|++++|.+.+++.
T Consensus       326 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  365 (388)
T d1w3ba_         326 RLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEA  365 (388)
T ss_dssp             HHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999887652 235677888999999999999999999875

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.5e-12  Score=93.17  Aligned_cols=185  Identities=10%  Similarity=-0.075  Sum_probs=132.2

Q ss_pred             HHhhhhhhhHHHHH-----Hc-CCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChh
Q 045498           19 INGMCKIREIDSAI-----KK-GICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF   92 (207)
Q Consensus        19 l~~~~~~g~~~~a~-----~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~   92 (207)
                      ...+.+.|++++|+     .. ..+-++.+|..+..++...|++++|...|++..+.. +-+...+..+...+...|+++
T Consensus        26 g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~  104 (323)
T d1fcha_          26 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQR  104 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccccc
Confidence            34455666666666     11 122245566666666777777777777777666543 234455566666666666666


Q ss_pred             hHHHHHHHHHhCC-------------------------------------------------C-CccHHHHHHHHHHHhc
Q 045498           93 SAMALLQTLERDK-------------------------------------------------Y-ELNIEVYSLVIDGLCR  122 (207)
Q Consensus        93 ~a~~~~~~m~~~~-------------------------------------------------~-~~~~~~~~~li~~~~~  122 (207)
                      +|.+.+++.....                                                 . .++..++..+...+..
T Consensus       105 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~  184 (323)
T d1fcha_         105 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL  184 (323)
T ss_dssp             HHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH
T ss_pred             ccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence            6666665543221                                                 1 2245567777888899


Q ss_pred             CCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHH
Q 045498          123 VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSF  202 (207)
Q Consensus       123 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~  202 (207)
                      .|++++|...+++....... +...|..+...|.+.|++++|.+.|++..+.. +-+..++..+..+|.+.|++++|.+.
T Consensus       185 ~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~  262 (323)
T d1fcha_         185 SGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEH  262 (323)
T ss_dssp             TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCCCHHHHHHH
Confidence            99999999999998877543 57788999999999999999999999988763 23567899999999999999999999


Q ss_pred             HHhh
Q 045498          203 LKKN  206 (207)
Q Consensus       203 ~~~m  206 (207)
                      |++.
T Consensus       263 ~~~a  266 (323)
T d1fcha_         263 FLEA  266 (323)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9875

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.2e-12  Score=95.08  Aligned_cols=179  Identities=15%  Similarity=-0.003  Sum_probs=151.7

Q ss_pred             hhhhHHHHHhhhhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhH
Q 045498           12 FHVYGIRINGMCKIREIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDN   85 (207)
Q Consensus        12 ~~~~~~ll~~~~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~   85 (207)
                      ...+..+...+...|++++|.      ..-.+.+...+..+...+.+.|++++|+..|++..+.. +-+..++..+...+
T Consensus       203 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~  281 (388)
T d1w3ba_         203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANAL  281 (388)
T ss_dssp             HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            457788888999999999988      22234466778889999999999999999999998864 44667889999999


Q ss_pred             hhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 045498           86 WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEAD  165 (207)
Q Consensus        86 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~  165 (207)
                      ...|++++|...++...... +.+...+..+...+.+.|++++|.+.+++..+.... +..++..+..+|.+.|++++|.
T Consensus       282 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~  359 (388)
T d1w3ba_         282 KEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEAL  359 (388)
T ss_dssp             HHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHH
T ss_pred             HHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999987764 557788899999999999999999999999886433 5778889999999999999999


Q ss_pred             HHHHHHHHcCCCC-ChhhHHHHHHHHHhcCc
Q 045498          166 KLLVQMKEKGCFP-DSTSFNTVIQGFLVKNE  195 (207)
Q Consensus       166 ~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~  195 (207)
                      ..|++..+.  .| +..+|..+..+|.+.||
T Consensus       360 ~~~~~al~l--~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         360 MHYKEAIRI--SPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence            999998875  45 56788999998887775

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3e-10  Score=80.92  Aligned_cols=159  Identities=14%  Similarity=-0.029  Sum_probs=130.3

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCC
Q 045498           45 SLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG  124 (207)
Q Consensus        45 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~  124 (207)
                      .....+.+.|++++|+..|++..+.. |-+..+|..+..++...|++++|...+.+..+... -+...+..+..+|...|
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-ccccccccccccccccc
Confidence            34556789999999999999999875 44677899999999999999999999999887653 36778888999999999


Q ss_pred             CHHHHHHHHHHHHhCCC--------------------------------------------------CCChhhHHHHHHH
Q 045498          125 RWEEARKKLDQLSEKGL--------------------------------------------------VPGVVTYNILING  154 (207)
Q Consensus       125 ~~~~a~~~~~~~~~~g~--------------------------------------------------~~~~~~~~~li~~  154 (207)
                      ++++|.+.++.......                                                  .++...+..+...
T Consensus       102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~  181 (323)
T d1fcha_         102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL  181 (323)
T ss_dssp             CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred             cccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence            99999998887654310                                                  1234456677788


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          155 LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       155 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      +...|++++|...|+...... +-+..+|..+..++...|++++|.+.+++.
T Consensus       182 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  232 (323)
T d1fcha_         182 FNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRA  232 (323)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHH
Confidence            889999999999999988763 335778889999999999999999998875

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=1e-09  Score=77.89  Aligned_cols=169  Identities=10%  Similarity=0.004  Sum_probs=134.1

Q ss_pred             CCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHH
Q 045498           36 ICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL  115 (207)
Q Consensus        36 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~  115 (207)
                      .+.+...|...+....+.|+++.|..+|+++.+........+|...+....+.++.+.|.++|++..+.... +...|..
T Consensus        95 ~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~  173 (308)
T d2onda1          95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVT  173 (308)
T ss_dssp             TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHH
Confidence            444566788888889999999999999999987643333457899999999999999999999999887643 3344443


Q ss_pred             HHH-HHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC--hhhHHHHHHHHH
Q 045498          116 VID-GLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKG-CFPD--STSFNTVIQGFL  191 (207)
Q Consensus       116 li~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~--~~~~~~l~~~~~  191 (207)
                      ... -+...|+.+.|..+|+.+.+... .+...|...+..+.+.|+++.|..+|++..+.. ..|.  ...|...+..-.
T Consensus       174 ~a~~e~~~~~~~~~a~~i~e~~l~~~p-~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~  252 (308)
T d2onda1         174 AALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES  252 (308)
T ss_dssp             HHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence            333 23456899999999999988733 367889999999999999999999999988763 3443  346888888878


Q ss_pred             hcCchhHHHHHHHhh
Q 045498          192 VKNETDRASSFLKKN  206 (207)
Q Consensus       192 ~~~~~~~a~~~~~~m  206 (207)
                      ..|+.+.+..+++++
T Consensus       253 ~~G~~~~~~~~~~r~  267 (308)
T d2onda1         253 NIGDLASILKVEKRR  267 (308)
T ss_dssp             HHSCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHH
Confidence            899999999998875

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=2.7e-09  Score=75.70  Aligned_cols=150  Identities=11%  Similarity=-0.021  Sum_probs=122.5

Q ss_pred             ChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHH
Q 045498           55 RLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLD  134 (207)
Q Consensus        55 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  134 (207)
                      ..++|..+|++..+...+.+...|..........|+.+.|..+++++.+........+|...+..+.+.|+.+.|.++|+
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            45788999999887655556677888888899999999999999999876544445688999999999999999999999


Q ss_pred             HHHhCCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          135 QLSEKGLVPGVVTYNILING-LCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       135 ~~~~~g~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      ...+.+.. +...|...... +...|+.+.|..+|+.+.+. .+.+...|...++.+.+.|++++|+.+|++.
T Consensus       159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~a  229 (308)
T d2onda1         159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERV  229 (308)
T ss_dssp             HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            99887544 44455444433 34468999999999999986 3456788999999999999999999999874

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.7e-09  Score=77.08  Aligned_cols=188  Identities=9%  Similarity=0.040  Sum_probs=134.3

Q ss_pred             hhhHHHHHhhhhhhhHHHHH-----HcCCCc-cHHhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCcchhhHHHHHhhH
Q 045498           13 HVYGIRINGMCKIREIDSAI-----KKGICL-DVFVYSSLINGLCTFN-RLKEAVELFDKMVAQGITAELVTYNPLIHDN   85 (207)
Q Consensus        13 ~~~~~ll~~~~~~g~~~~a~-----~~~~~~-~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~   85 (207)
                      ..|+.+-..+.+.+..++|+     .-.+.| +...|+....++...+ ++++|+..++...+.. +-+..+|+.+-..+
T Consensus        44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~  122 (315)
T d2h6fa1          44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV  122 (315)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHH
Confidence            45566666677777888887     222333 4556777777777765 4888888888887765 44667888888888


Q ss_pred             hhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC-----
Q 045498           86 WEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM-----  160 (207)
Q Consensus        86 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~-----  160 (207)
                      .+.|++++|+..+++..+... -+...|..+...+.+.|++++|.+.++...+..+. +...|+.+...+.+.+.     
T Consensus       123 ~~l~~~~eAl~~~~kal~~dp-~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~  200 (315)
T d2h6fa1         123 EWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA  200 (315)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred             HhhccHHHHHHHHhhhhhhhh-cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhh
Confidence            888888888888888887753 36788888888888888888888888888887544 66677777666665554     


Q ss_pred             -HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498          161 -IMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK  205 (207)
Q Consensus       161 -~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  205 (207)
                       +++|...+....+.. +.+...|..+...+... ..+++.+.+++
T Consensus       201 ~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~-~~~~~~~~~~~  244 (315)
T d2h6fa1         201 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQDR-GLSKYPNLLNQ  244 (315)
T ss_dssp             HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTT-CGGGCHHHHHH
T ss_pred             hhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhc-ChHHHHHHHHH
Confidence             567888888887773 33666777776655444 45666666554

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=7.9e-09  Score=71.01  Aligned_cols=26  Identities=15%  Similarity=0.133  Sum_probs=22.2

Q ss_pred             hhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          181 TSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       181 ~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      .+|..+...+...|++++|.+.|++.
T Consensus       210 ~~~~~lg~~~~~~g~~~~A~~~~~~a  235 (259)
T d1xnfa_         210 ETNFYLGKYYLSLGDLDSATALFKLA  235 (259)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            45667888999999999999999875

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1e-08  Score=72.91  Aligned_cols=188  Identities=11%  Similarity=0.028  Sum_probs=100.9

Q ss_pred             hhHHHHHhhhhhh-hHHHHH------HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHh
Q 045498           14 VYGIRINGMCKIR-EIDSAI------KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNW   86 (207)
Q Consensus        14 ~~~~ll~~~~~~g-~~~~a~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~   86 (207)
                      .|+....++...| ++++|+      -..-+-+..+|+.+...+.+.|++++|+..++++.+.. +-+...|..+...+.
T Consensus        79 a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~  157 (315)
T d2h6fa1          79 VWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQ  157 (315)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHH
Confidence            4455555555544 356655      11123345666666666666777777777777766653 345566666666666


Q ss_pred             hhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 045498           87 EKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR------WEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM  160 (207)
Q Consensus        87 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~------~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~  160 (207)
                      ..+++++|...+++..+.+.. +...|+.+...+.+.+.      +++|.+.+....+..+. +...|+.+...+.. ..
T Consensus       158 ~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~-~~  234 (315)
T d2h6fa1         158 EFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQD-RG  234 (315)
T ss_dssp             HHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTT-TC
T ss_pred             HHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHh-cC
Confidence            777777777777766665422 45555555444444333      45666666666655332 45555555444333 33


Q ss_pred             HHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhc--CchhHHHHHHHh
Q 045498          161 IMEADKLLVQMKEKGCF-PDSTSFNTVIQGFLVK--NETDRASSFLKK  205 (207)
Q Consensus       161 ~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~--~~~~~a~~~~~~  205 (207)
                      .+++...++...+.... .+...+..+...|...  +..+.+...+++
T Consensus       235 ~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~k  282 (315)
T d2h6fa1         235 LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNK  282 (315)
T ss_dssp             GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            45555666555543221 1233444555555432  444455554443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=1.5e-07  Score=61.90  Aligned_cols=133  Identities=10%  Similarity=-0.122  Sum_probs=93.4

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCH
Q 045498           47 INGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW  126 (207)
Q Consensus        47 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~  126 (207)
                      -..+...|++++|++.|.++    .+|+..+|..+-.++...|++++|...|++..+.+. -+...|..+..++.+.|++
T Consensus        12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp-~~~~a~~~~g~~~~~~g~~   86 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTEKY   86 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-hhhhhHHHHHHHHHhhccH
Confidence            44556778888888888754    245667777788888888888888888888777653 3667788888888888888


Q ss_pred             HHHHHHHHHHHhCCC------------C--CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 045498          127 EEARKKLDQLSEKGL------------V--PG-VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFN  184 (207)
Q Consensus       127 ~~a~~~~~~~~~~g~------------~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~  184 (207)
                      ++|.+.|++......            .  ++ ..++..+..++.+.|++++|.+.+....+....|......
T Consensus        87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~  159 (192)
T d1hh8a_          87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKID  159 (192)
T ss_dssp             HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHH
T ss_pred             HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHH
Confidence            888888887654311            1  01 2445566777888888888888888777664444333333

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.90  E-value=7.3e-08  Score=67.54  Aligned_cols=194  Identities=10%  Similarity=-0.061  Sum_probs=131.4

Q ss_pred             hhhHHHHHhhhhhhhHHHHH-----------HcCCCc-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-Ccch
Q 045498           13 HVYGIRINGMCKIREIDSAI-----------KKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQ----GI-TAEL   75 (207)
Q Consensus        13 ~~~~~ll~~~~~~g~~~~a~-----------~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~   75 (207)
                      ..|......|...|++++|.           ..+-++ -..+|..+..+|.+.|++++|...+++..+.    |. ....
T Consensus        38 ~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  117 (290)
T d1qqea_          38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA  117 (290)
T ss_dssp             HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHH
Confidence            35777777788888888887           222222 2467899999999999999999999977542    21 1123


Q ss_pred             hhHHHHHhhHhh-hcChhhHHHHHHHHHhC----CCCc-cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCh----
Q 045498           76 VTYNPLIHDNWE-KQGRFSAMALLQTLERD----KYEL-NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGV----  145 (207)
Q Consensus        76 ~~~~~ll~~~~~-~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~----  145 (207)
                      .++..+...+.. .|++++|...+.+..+.    +.++ ...++..+...+.+.|++++|.+.+++..........    
T Consensus       118 ~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~  197 (290)
T d1qqea_         118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS  197 (290)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred             HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhh
Confidence            455566666644 59999999999886532    2222 2456788899999999999999999998776332111    


Q ss_pred             --hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC---hhhHHHHHHHHHh--cCchhHHHHHHHhh
Q 045498          146 --VTYNILINGLCKKGMIMEADKLLVQMKEKGCF-PD---STSFNTVIQGFLV--KNETDRASSFLKKN  206 (207)
Q Consensus       146 --~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~---~~~~~~l~~~~~~--~~~~~~a~~~~~~m  206 (207)
                        ..+...+..+...|+++.|...+++..+.... ++   ......++.++..  .+.+++|...|+++
T Consensus       198 ~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~  266 (290)
T d1qqea_         198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF  266 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence              12344555667889999999999988765321 12   2345666777654  34577888777653

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=9.2e-08  Score=57.66  Aligned_cols=90  Identities=16%  Similarity=0.070  Sum_probs=45.6

Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHH
Q 045498           48 NGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWE  127 (207)
Q Consensus        48 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~  127 (207)
                      +.+.+.|++++|+..|++..+.. |-+...|..+-.++...|++++|...+....+.+ +.+...|..+..++...|+++
T Consensus        11 ~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~   88 (117)
T d1elwa_          11 NKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFE   88 (117)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHH
Confidence            34445555555555555555443 3344445555555555555555555555554443 224445555555555555555


Q ss_pred             HHHHHHHHHHhC
Q 045498          128 EARKKLDQLSEK  139 (207)
Q Consensus       128 ~a~~~~~~~~~~  139 (207)
                      +|...++...+.
T Consensus        89 ~A~~~~~~a~~~  100 (117)
T d1elwa_          89 EAKRTYEEGLKH  100 (117)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHh
Confidence            555555555543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.84  E-value=4e-08  Score=64.80  Aligned_cols=100  Identities=12%  Similarity=-0.131  Sum_probs=87.7

Q ss_pred             cchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 045498           73 AELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILI  152 (207)
Q Consensus        73 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li  152 (207)
                      |+...+...-+.+.+.|++++|+..|.+..+.. +.+...|..+..+|.+.|++++|...++...+.... +..+|..+.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence            666677778889999999999999999988876 447888999999999999999999999999887443 577899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHc
Q 045498          153 NGLCKKGMIMEADKLLVQMKEK  174 (207)
Q Consensus       153 ~~~~~~~~~~~a~~~~~~m~~~  174 (207)
                      .+|.+.|++++|...|+...+.
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~l  101 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYSL  101 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHh
Confidence            9999999999999999988764

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=2.3e-07  Score=59.01  Aligned_cols=96  Identities=8%  Similarity=0.078  Sum_probs=68.3

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhc
Q 045498           43 YSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR  122 (207)
Q Consensus        43 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  122 (207)
                      +...-+.|.+.|++++|+..|++..+.. +-+...|..+-.++...|++++|...|++..+.. +-+...|..+..++..
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~   90 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA   90 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHH
Confidence            3344556677788888888888777764 4456677777777777777777777777777664 2356677777777777


Q ss_pred             CCCHHHHHHHHHHHHhCC
Q 045498          123 VGRWEEARKKLDQLSEKG  140 (207)
Q Consensus       123 ~~~~~~a~~~~~~~~~~g  140 (207)
                      .|++++|.+.+++.....
T Consensus        91 ~g~~~eA~~~~~~a~~~~  108 (159)
T d1a17a_          91 LGKFRAALRDYETVVKVK  108 (159)
T ss_dssp             TTCHHHHHHHHHHHHHHS
T ss_pred             cCCHHHHHHHHHHHHHcC
Confidence            777777777777777664

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.82  E-value=5.5e-07  Score=61.48  Aligned_cols=132  Identities=11%  Similarity=-0.161  Sum_probs=103.8

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHH
Q 045498           40 VFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDG  119 (207)
Q Consensus        40 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  119 (207)
                      ..+|..+-.+|.+.|++++|+..|++..+.. |-+..+|+.+-.++...|++++|...|++..+.... +..++..+..+
T Consensus        37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~  114 (259)
T d1xnfa_          37 AQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIA  114 (259)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHH
Confidence            4567778889999999999999999998864 456788999999999999999999999999887533 56688888899


Q ss_pred             HhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498          120 LCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK  174 (207)
Q Consensus       120 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  174 (207)
                      +...|++++|.+.++...+.... +......+...+.+.+..+....+.......
T Consensus       115 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (259)
T d1xnfa_         115 LYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS  168 (259)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred             HHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Confidence            99999999999999998887432 4444444555556666666666666655554

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.80  E-value=2.2e-07  Score=65.00  Aligned_cols=166  Identities=13%  Similarity=-0.043  Sum_probs=121.0

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCcc-hhhHHHHHhhHhhhcChhhHHHHHHHHHhC----CC-CccH
Q 045498           41 FVYSSLINGLCTFNRLKEAVELFDKMVAQ----GITAE-LVTYNPLIHDNWEKQGRFSAMALLQTLERD----KY-ELNI  110 (207)
Q Consensus        41 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~  110 (207)
                      ..|......|...+++++|.+.|.+..+.    +-+++ ..+|..+..+|.+.|++++|...+++..+.    +. ....
T Consensus        38 ~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  117 (290)
T d1qqea_          38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA  117 (290)
T ss_dssp             HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHH
Confidence            35778888999999999999999988652    22222 357888899999999999999999876543    21 1124


Q ss_pred             HHHHHHHHHHh-cCCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh----
Q 045498          111 EVYSLVIDGLC-RVGRWEEARKKLDQLSEK----GLVP-GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDS----  180 (207)
Q Consensus       111 ~~~~~li~~~~-~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----  180 (207)
                      .++..+...|. ..|++++|.+.+++..+.    +..+ ...++..+...+...|++++|...|++..........    
T Consensus       118 ~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~  197 (290)
T d1qqea_         118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS  197 (290)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred             HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhh
Confidence            55666666664 469999999999877542    2111 1345788899999999999999999998875322111    


Q ss_pred             --hhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          181 --TSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       181 --~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                        ..+...+.++...|+++.|.+.+++.
T Consensus       198 ~~~~~~~~~~~~l~~~d~~~A~~~~~~~  225 (290)
T d1qqea_         198 LKDYFLKKGLCQLAATDAVAAARTLQEG  225 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence              22345556777889999999988764

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=9.1e-07  Score=58.01  Aligned_cols=128  Identities=12%  Similarity=0.041  Sum_probs=103.5

Q ss_pred             hhHHHHHhhhhhhhHHHHH---HcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcC
Q 045498           14 VYGIRINGMCKIREIDSAI---KKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG   90 (207)
Q Consensus        14 ~~~~ll~~~~~~g~~~~a~---~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~   90 (207)
                      .|+. ...+...|++++|+   ..-.+|++.+|..+-.++...|++++|++.|++..+.. +-+...|..+-.++.+.|+
T Consensus         8 l~~~-g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~   85 (192)
T d1hh8a_           8 LWNE-GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK   85 (192)
T ss_dssp             HHHH-HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHH-HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhcc
Confidence            3443 45567789999999   55567888899999999999999999999999999876 5567889999999999999


Q ss_pred             hhhHHHHHHHHHhCC------------C--Cc-cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC
Q 045498           91 RFSAMALLQTLERDK------------Y--EL-NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVP  143 (207)
Q Consensus        91 ~~~a~~~~~~m~~~~------------~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~  143 (207)
                      +++|...|++.....            .  .+ ...++..+..++.+.|++++|.+.++...+....+
T Consensus        86 ~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          86 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            999999999876431            1  11 13566777888999999999999999988875443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=4.2e-07  Score=57.73  Aligned_cols=118  Identities=11%  Similarity=-0.040  Sum_probs=93.5

Q ss_pred             HHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 045498           81 LIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM  160 (207)
Q Consensus        81 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~  160 (207)
                      .-+.+.+.|++++|...|++..+.. +-+...|..+..+|...|++++|.+.|+...+.... +...|..+..++...|+
T Consensus        16 ~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~   93 (159)
T d1a17a_          16 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGK   93 (159)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCC
Confidence            3457789999999999999999886 347889999999999999999999999999987544 67899999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCChhhHHHHHHH--HHhcCchhHHHH
Q 045498          161 IMEADKLLVQMKEKGCFPDSTSFNTVIQG--FLVKNETDRASS  201 (207)
Q Consensus       161 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~  201 (207)
                      +++|...+++..... +-+...+..+..+  ....+.++++..
T Consensus        94 ~~eA~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~~~a~~  135 (159)
T d1a17a_          94 FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIA  135 (159)
T ss_dssp             HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999873 2234444444333  233445555544

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=2.7e-07  Score=55.55  Aligned_cols=97  Identities=10%  Similarity=-0.065  Sum_probs=83.5

Q ss_pred             HHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 045498           81 LIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGM  160 (207)
Q Consensus        81 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~  160 (207)
                      --+.+...|++++|...|++..+.. +-+...|..+..+|.+.|++++|.+.++...+.+.. +...|..+..++...|+
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~   86 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNR   86 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccC
Confidence            3456788899999999999998876 447888999999999999999999999999988654 78899999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCChh
Q 045498          161 IMEADKLLVQMKEKGCFPDST  181 (207)
Q Consensus       161 ~~~a~~~~~~m~~~~~~p~~~  181 (207)
                      +++|...|+...+.  .|+..
T Consensus        87 ~~~A~~~~~~a~~~--~p~~~  105 (117)
T d1elwa_          87 FEEAKRTYEEGLKH--EANNP  105 (117)
T ss_dssp             HHHHHHHHHHHHTT--CTTCH
T ss_pred             HHHHHHHHHHHHHh--CCCCH
Confidence            99999999999876  45443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.77  E-value=1.5e-07  Score=61.92  Aligned_cols=101  Identities=12%  Similarity=0.001  Sum_probs=89.7

Q ss_pred             CccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHH
Q 045498           37 CLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLV  116 (207)
Q Consensus        37 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  116 (207)
                      .|+...+...-+.+.+.|++++|+..|++..... |.+...|..+-.+|.+.|++++|...+++..+... -+...|..+
T Consensus         1 ~~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p-~~~~a~~~l   78 (201)
T d2c2la1           1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFL   78 (201)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCC-CcHHHHHHH
Confidence            4777888888999999999999999999998875 56788899999999999999999999999987652 267889999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHhC
Q 045498          117 IDGLCRVGRWEEARKKLDQLSEK  139 (207)
Q Consensus       117 i~~~~~~~~~~~a~~~~~~~~~~  139 (207)
                      ..+|.+.|++++|...|++..+.
T Consensus        79 g~~~~~l~~~~~A~~~~~~al~l  101 (201)
T d2c2la1          79 GQCQLEMESYDEAIANLQRAYSL  101 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHh
Confidence            99999999999999999988764

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.73  E-value=1.3e-07  Score=56.43  Aligned_cols=89  Identities=10%  Similarity=-0.053  Sum_probs=60.9

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCc
Q 045498          116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNE  195 (207)
Q Consensus       116 li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~  195 (207)
                      ....+.+.|++++|...+++..+.... +...|..+..++.+.|++++|...|+...+.. +.+..++..+..+|...|+
T Consensus        22 ~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~   99 (112)
T d1hxia_          22 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence            344566677777777777777766433 56677777777777777777777777766652 2356677777777777777


Q ss_pred             hhHHHHHHHhh
Q 045498          196 TDRASSFLKKN  206 (207)
Q Consensus       196 ~~~a~~~~~~m  206 (207)
                      +++|.+.+++.
T Consensus       100 ~~~A~~~l~~~  110 (112)
T d1hxia_         100 ANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77777777653

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=4.6e-07  Score=54.87  Aligned_cols=94  Identities=12%  Similarity=-0.034  Sum_probs=52.0

Q ss_pred             HHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhCCCCCC-hhhHHHHHHHH
Q 045498           80 PLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGR---WEEARKKLDQLSEKGLVPG-VVTYNILINGL  155 (207)
Q Consensus        80 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~  155 (207)
                      .+++.+...+++++|.+.|++....+ +.+..++..+..++.+.++   +++|.+++++....+..|+ ..++..+..+|
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            45555556666666666666655554 2355555555555554433   3346666666555433322 22455556666


Q ss_pred             HhcCCHHHHHHHHHHHHHc
Q 045498          156 CKKGMIMEADKLLVQMKEK  174 (207)
Q Consensus       156 ~~~~~~~~a~~~~~~m~~~  174 (207)
                      .+.|++++|.+.|+.+.+.
T Consensus        83 ~~~g~~~~A~~~~~~aL~~  101 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQT  101 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHh
Confidence            6666666666666666654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.65  E-value=2.8e-06  Score=59.99  Aligned_cols=193  Identities=14%  Similarity=0.051  Sum_probs=131.9

Q ss_pred             hhHHHHHhhhhhhhHHHHH-----------HcCCC--c-cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC----CCcch
Q 045498           14 VYGIRINGMCKIREIDSAI-----------KKGIC--L-DVFVYSSLINGLCTFNRLKEAVELFDKMVAQG----ITAEL   75 (207)
Q Consensus        14 ~~~~ll~~~~~~g~~~~a~-----------~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----~~~~~   75 (207)
                      ++..+...+...|+++.+.           .....  + ....+..+...+...|+++.+...+.......    .....
T Consensus        93 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  172 (366)
T d1hz4a_          93 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL  172 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHH
Confidence            3444445555666666655           11111  1 22355667778889999999999998887532    22233


Q ss_pred             hhHHHHHhhHhhhcChhhHHHHHHHHHhC----CCCc--cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC---hh
Q 045498           76 VTYNPLIHDNWEKQGRFSAMALLQTLERD----KYEL--NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG---VV  146 (207)
Q Consensus        76 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~  146 (207)
                      .++......+...++...+...+.+....    +..+  ....+......+...|+++.|...++.........+   ..
T Consensus       173 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  252 (366)
T d1hz4a_         173 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG  252 (366)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHH
Confidence            45555666777888888888877765432    1111  234556667788899999999999988766533322   34


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          147 TYNILINGLCKKGMIMEADKLLVQMKEK----GCFPD-STSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       147 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      .+..+...+...|++++|...++.....    +..|+ ..++..+...|.+.|++++|.+.+++.
T Consensus       253 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~A  317 (366)
T d1hz4a_         253 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA  317 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            5566788999999999999999987642    33333 457888889999999999999999874

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=3.3e-07  Score=55.57  Aligned_cols=96  Identities=17%  Similarity=0.120  Sum_probs=79.9

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhc---ChhhHHHHHHHHHhCCCCcc-HHHHHHHHHH
Q 045498           44 SSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQ---GRFSAMALLQTLERDKYELN-IEVYSLVIDG  119 (207)
Q Consensus        44 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~  119 (207)
                      ..+++.+...+++++|.+.|++....+ +.+..++..+-.++.+.+   +.++|..++++..+.+..|+ ...+..+..+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            567888889999999999999999876 567788888888887644   55679999999888765554 3478888999


Q ss_pred             HhcCCCHHHHHHHHHHHHhCC
Q 045498          120 LCRVGRWEEARKKLDQLSEKG  140 (207)
Q Consensus       120 ~~~~~~~~~a~~~~~~~~~~g  140 (207)
                      |.+.|++++|.+.|++..+..
T Consensus        82 y~~~g~~~~A~~~~~~aL~~~  102 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQTE  102 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHhhhHHHHHHHHHHHHhC
Confidence            999999999999999999974

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.59  E-value=5.2e-07  Score=53.78  Aligned_cols=88  Identities=9%  Similarity=-0.132  Sum_probs=55.9

Q ss_pred             HhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 045498           82 IHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMI  161 (207)
Q Consensus        82 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~  161 (207)
                      -..+.+.|++++|...+++..+.... +...|..+..++.+.|++++|...+++..+.... +...+..+...|...|++
T Consensus        23 g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~~  100 (112)
T d1hxia_          23 GLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNA  100 (112)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCCH
Confidence            34555666666666666666655422 4566666666667777777777777666665433 466666666777777777


Q ss_pred             HHHHHHHHHH
Q 045498          162 MEADKLLVQM  171 (207)
Q Consensus       162 ~~a~~~~~~m  171 (207)
                      ++|.+.+++.
T Consensus       101 ~~A~~~l~~~  110 (112)
T d1hxia_         101 NAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777666654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=1.5e-05  Score=50.87  Aligned_cols=125  Identities=8%  Similarity=-0.071  Sum_probs=74.6

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHh
Q 045498           42 VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLC  121 (207)
Q Consensus        42 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  121 (207)
                      .+...-+.+.+.|++++|+..|.+..+.-..... .             .+........+       ...+|+.+..+|.
T Consensus        15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~-~-------------~~~~~~~~~~~-------~~~~~~nla~~y~   73 (170)
T d1p5qa1          15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS-F-------------SNEEAQKAQAL-------RLASHLNLAMCHL   73 (170)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC-C-------------CSHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccc-c-------------chHHHhhhchh-------HHHHHHHHHHHHH
Confidence            4455566788889999999999887653110000 0             00000011111       1234566677777


Q ss_pred             cCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHH
Q 045498          122 RVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP-DSTSFNTVIQGF  190 (207)
Q Consensus       122 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~  190 (207)
                      +.|++++|...++......+. +..++..+..+|...|++++|...|+...+.  .| |..+...+-...
T Consensus        74 k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~P~n~~~~~~l~~~~  140 (170)
T d1p5qa1          74 KLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQ  140 (170)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHH
T ss_pred             hhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence            777777777777777776433 6677777777777777888887777777765  23 444444443333

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.44  E-value=6.8e-07  Score=63.62  Aligned_cols=180  Identities=6%  Similarity=-0.040  Sum_probs=116.5

Q ss_pred             hhhhhHHHHH------HcCCCccHHhHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCcchhhHH-HHHhhHhhhcChhh
Q 045498           23 CKIREIDSAI------KKGICLDVFVYSSLINGLCTFN--RLKEAVELFDKMVAQGITAELVTYN-PLIHDNWEKQGRFS   93 (207)
Q Consensus        23 ~~~g~~~~a~------~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~-~ll~~~~~~~~~~~   93 (207)
                      ...|.+++|+      -...+.+...|..+..++...+  ++++|+..+++..... +++...+. .+...+...+..++
T Consensus        84 ~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~  162 (334)
T d1dcea1          84 ESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAE  162 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHH
Confidence            3455566666      2223446666777766666655  4789999999988764 34445544 44466677889999


Q ss_pred             HHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHH------------------------------HHHHHHHHhCCCCC
Q 045498           94 AMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA------------------------------RKKLDQLSEKGLVP  143 (207)
Q Consensus        94 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a------------------------------~~~~~~~~~~g~~~  143 (207)
                      |...++...+.... +...|+.+...+.+.|++++|                              ...+....... .+
T Consensus       163 Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~  240 (334)
T d1dcea1         163 ELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR-AE  240 (334)
T ss_dssp             HHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSC-CC
T ss_pred             HHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-cc
Confidence            99999988877643 677777777777776665433                              11222222221 12


Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          144 GVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       144 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      +...+..+...+...+++++|...+.+..+.. +.+..++..+..++.+.|++++|.+++++.
T Consensus       241 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~a  302 (334)
T d1dcea1         241 PLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTL  302 (334)
T ss_dssp             CSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            33344455566666778888888777766542 124567777888888899999998888764

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=4.4e-05  Score=53.61  Aligned_cols=194  Identities=11%  Similarity=0.027  Sum_probs=131.6

Q ss_pred             hhhHHHHHhhhhhhhHHHHH-----------HcCCCc-cHHhHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCcc--
Q 045498           13 HVYGIRINGMCKIREIDSAI-----------KKGICL-DVFVYSSLINGLCTFNRLKEAVELFDKMVA----QGITAE--   74 (207)
Q Consensus        13 ~~~~~ll~~~~~~g~~~~a~-----------~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~~~--   74 (207)
                      ..+..+...|...|++++|+           ..+..+ ...++..+...+...|++..+...+.+...    .+....  
T Consensus        52 ~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~  131 (366)
T d1hz4a_          52 VATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM  131 (366)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhH
Confidence            35667778888899999888           111111 234566677788888999999988887653    121111  


Q ss_pred             -hhhHHHHHhhHhhhcChhhHHHHHHHHHhCC----CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCCCC-
Q 045498           75 -LVTYNPLIHDNWEKQGRFSAMALLQTLERDK----YELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK----GLVPG-  144 (207)
Q Consensus        75 -~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~~~-  144 (207)
                       ...+..+-..+...|+++.+...+.......    .......+......+...++...+...+......    +..+. 
T Consensus       132 ~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~  211 (366)
T d1hz4a_         132 HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDW  211 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred             HHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCch
Confidence             1245556677888899999998888765432    2334556666677788888888888877765432    11111 


Q ss_pred             -hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          145 -VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFP---DSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       145 -~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                       ...+..+...+...|++++|...++...+.....   ....+..+..++...|++++|.+.+++.
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  277 (366)
T d1hz4a_         212 ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEEL  277 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence             2345566677888999999999998776543222   2345666788999999999999998764

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=2.1e-06  Score=52.35  Aligned_cols=93  Identities=14%  Similarity=0.091  Sum_probs=59.6

Q ss_pred             HHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC-CC-----hhhHHHH
Q 045498           78 YNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLV-PG-----VVTYNIL  151 (207)
Q Consensus        78 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~-~~-----~~~~~~l  151 (207)
                      +..+-..+...|++++|...|.+..+.+. .+...+..+..+|.+.|++++|.+.+++..+.... +.     ..+|..+
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            34455667777777777777777776652 35667777777777777777777777776654211 00     1245555


Q ss_pred             HHHHHhcCCHHHHHHHHHHH
Q 045498          152 INGLCKKGMIMEADKLLVQM  171 (207)
Q Consensus       152 i~~~~~~~~~~~a~~~~~~m  171 (207)
                      ...+...+++++|...|+..
T Consensus        86 g~~~~~~~~~~~A~~~~~ka  105 (128)
T d1elra_          86 GNSYFKEEKYKDAIHFYNKS  105 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHH
Confidence            55666666777777766544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=2.2e-05  Score=50.13  Aligned_cols=60  Identities=13%  Similarity=-0.050  Sum_probs=52.3

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          146 VTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       146 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      .+|+.+..+|.+.|++++|...++...+.. +.++.++..+..+|...|++++|...|++.
T Consensus        63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a  122 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKV  122 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHH
Confidence            367778899999999999999999998873 337888999999999999999999999875

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.3e-05  Score=48.72  Aligned_cols=97  Identities=11%  Similarity=0.073  Sum_probs=79.8

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCC-----cc-HHHHHH
Q 045498           42 VYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYE-----LN-IEVYSL  115 (207)
Q Consensus        42 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-----~~-~~~~~~  115 (207)
                      .+..+-+.+.+.|++++|+..|.+..+.+ +.+..++..+-.+|.+.|++++|...+++..+....     +. ..+|..
T Consensus         6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            34566778999999999999999999875 557889999999999999999999999997764311     11 246777


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHhC
Q 045498          116 VIDGLCRVGRWEEARKKLDQLSEK  139 (207)
Q Consensus       116 li~~~~~~~~~~~a~~~~~~~~~~  139 (207)
                      +-..+...+++++|.+.|+.....
T Consensus        85 lg~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          85 IGNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhc
Confidence            888889999999999999887765

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.33  E-value=5.1e-05  Score=48.81  Aligned_cols=130  Identities=12%  Similarity=0.000  Sum_probs=89.9

Q ss_pred             cHHhHHHHH---HHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHH
Q 045498           39 DVFVYSSLI---NGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSL  115 (207)
Q Consensus        39 ~~~~~~~ll---~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~  115 (207)
                      |...|..+.   ......|++++|.+.|.+.....  +...        +......+.+...-..+..    .....+..
T Consensus         7 D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~--------l~~~~~~~w~~~~r~~l~~----~~~~a~~~   72 (179)
T d2ff4a2           7 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREW--RGPV--------LDDLRDFQFVEPFATALVE----DKVLAHTA   72 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CSST--------TGGGTTSTTHHHHHHHHHH----HHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cccc--------cccCcchHHHHHHHHHHHH----HHHHHHHH
Confidence            444455444   46678899999999999987641  1110        0000111111111122221    13457788


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhhH
Q 045498          116 VIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKE-----KGCFPDSTSF  183 (207)
Q Consensus       116 li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~  183 (207)
                      +..++.+.|++++|...++...+.... +...|..++.++.+.|+..+|.+.|+++.+     .|+.|+..+-
T Consensus        73 la~~~~~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~  144 (179)
T d2ff4a2          73 KAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR  144 (179)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             HHHHHHHCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence            899999999999999999999987654 788999999999999999999999998854     5999987653

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.29  E-value=3.6e-05  Score=48.98  Aligned_cols=86  Identities=9%  Similarity=-0.070  Sum_probs=67.0

Q ss_pred             cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 045498          109 NIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQ  188 (207)
Q Consensus       109 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~  188 (207)
                      ....+..+..++.+.|++++|+..++...+.... +...|..+..++.+.|++++|...|+...+.. +.+..+...+..
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~  153 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK  153 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            4556777888899999999999999999987644 78889999999999999999999999998863 235555665555


Q ss_pred             HHHhcCch
Q 045498          189 GFLVKNET  196 (207)
Q Consensus       189 ~~~~~~~~  196 (207)
                      +..+....
T Consensus       154 ~~~~l~~~  161 (169)
T d1ihga1         154 VKQKIKAQ  161 (169)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            54443333

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.26  E-value=2.8e-05  Score=49.51  Aligned_cols=112  Identities=10%  Similarity=0.002  Sum_probs=83.7

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhC--------------CC-CcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCC
Q 045498           43 YSSLINGLCTFNRLKEAVELFDKMVAQ--------------GI-TAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYE  107 (207)
Q Consensus        43 ~~~ll~~~~~~~~~~~a~~~~~~m~~~--------------~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~  107 (207)
                      +......+.+.|++++|+..|.+..+.              .. +.....|..+-.++.+.|++++|+..+.+..+.. +
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p  108 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P  108 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-h
Confidence            445566677888999988888776431              01 1233456667788889999999999999999876 3


Q ss_pred             ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 045498          108 LNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC  156 (207)
Q Consensus       108 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~  156 (207)
                      .+...|..+..++.+.|++++|.+.|+...+.... +......+..+..
T Consensus       109 ~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~~~~  156 (169)
T d1ihga1         109 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQ  156 (169)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence            47889999999999999999999999999987433 4555555544443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.25  E-value=6.8e-05  Score=46.84  Aligned_cols=113  Identities=14%  Similarity=0.060  Sum_probs=80.1

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 045498           41 FVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL  120 (207)
Q Consensus        41 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  120 (207)
                      ..+..-.+.+.+.|++.+|+..|.+..+.-.  .             ....... .......    .....+|+.+..+|
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~--~-------------~~~~~~~-~~~~~~~----~~~~~~~~Nla~~~   77 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFI--H-------------TEEWDDQ-ILLDKKK----NIEISCNLNLATCY   77 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT--T-------------CTTCCCH-HHHHHHH----HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc--c-------------hhhhhhH-HHHHhhh----hHHHHHHhhHHHHH
Confidence            3455556677788889999888888775311  0             0000000 0000000    11235778888999


Q ss_pred             hcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498          121 CRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK  174 (207)
Q Consensus       121 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  174 (207)
                      .+.|++++|.+.++...+..+. +..+|..+..++...|++++|...|+...+.
T Consensus        78 ~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          78 NKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence            9999999999999999887643 7889999999999999999999999998886

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.24  E-value=4e-05  Score=47.97  Aligned_cols=114  Identities=16%  Similarity=0.074  Sum_probs=72.1

Q ss_pred             hhhHHHHHhhhhhhhHHHHHHcCCCccHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChh
Q 045498           13 HVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRF   92 (207)
Q Consensus        13 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~   92 (207)
                      ..+..-...+.+.|++++|+.        .|...+..+........... .....    .....+|..+..+|.+.|+++
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~--------~Y~~al~~~~~~~~~~~~~~-~~~~~----~~~~~~~~Nla~~~~~l~~~~   84 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIV--------KYKEALDFFIHTEEWDDQIL-LDKKK----NIEISCNLNLATCYNKNKDYP   84 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHH--------HHHHHHHTTTTCTTCCCHHH-HHHHH----HHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHH--------HHHHHHhhCcchhhhhhHHH-HHhhh----hHHHHHHhhHHHHHHHhcccc
Confidence            344555567778888888872        13223322222222111110 01111    112346677777888888888


Q ss_pred             hHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC
Q 045498           93 SAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG  140 (207)
Q Consensus        93 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g  140 (207)
                      +|...+.+..+.. +.+...|..+..++...|++++|...|+...+..
T Consensus        85 ~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~  131 (153)
T d2fbna1          85 KAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN  131 (153)
T ss_dssp             HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             hhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            8888888887765 3477888888888888888888888888888764

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.22  E-value=5.6e-05  Score=48.03  Aligned_cols=128  Identities=6%  Similarity=-0.095  Sum_probs=75.3

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHH
Q 045498           41 FVYSSLINGLCTFNRLKEAVELFDKMVAQ---GITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI  117 (207)
Q Consensus        41 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li  117 (207)
                      ..+.-....+.+.|++.+|+..|.+....   ...++.                 ........       .....|+.+.
T Consensus        16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~-----------------~~~~~~~~-------~~~~~~~Nla   71 (168)
T d1kt1a1          16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSE-----------------KESKASES-------FLLAAFLNLA   71 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH-----------------HHHHHHHH-------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccch-----------------hhhhhcch-------hHHHHHHhHH
Confidence            34555566677788888888887765432   000000                 00000000       0123455666


Q ss_pred             HHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 045498          118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN  194 (207)
Q Consensus       118 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~  194 (207)
                      .+|.+.|++++|...++...+.... +..+|..+..++...|++++|...|+...+.. +.+..+...+-....+.+
T Consensus        72 ~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~  146 (168)
T d1kt1a1          72 MCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQKKAK  146 (168)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHH
Confidence            7777888888888888877776533 67777777788888888888888888877652 224444444444433433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.18  E-value=6.1e-05  Score=47.82  Aligned_cols=131  Identities=11%  Similarity=-0.046  Sum_probs=81.6

Q ss_pred             hhhhHHHHHhhhhhhhHHHHHHcCCCccHHhHHHHHHHHHhcCChhHHHH-HHHHHHhCCCCcchhhHHHHHhhHhhhcC
Q 045498           12 FHVYGIRINGMCKIREIDSAIKKGICLDVFVYSSLINGLCTFNRLKEAVE-LFDKMVAQGITAELVTYNPLIHDNWEKQG   90 (207)
Q Consensus        12 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~-~~~~m~~~~~~~~~~~~~~ll~~~~~~~~   90 (207)
                      ...+......+.+.|++++|..        .|...+..+-..-....... ....+       ...+|+.+-.++.+.|+
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~--------~Y~~al~~~~~~~~~~~~~~~~~~~~-------~~~~~~Nla~~~~~l~~   79 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVI--------QYGKIVSWLEMEYGLSEKESKASESF-------LLAAFLNLAMCYLKLRE   79 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHH--------HHHHHHHHHTTCCSCCHHHHHHHHHH-------HHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHH--------HHHHHHHHHHHhhccchhhhhhcchh-------HHHHHHhHHHHHHHhhh
Confidence            3455666777888898888872        23333433322222211111 11111       12356667777888888


Q ss_pred             hhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 045498           91 RFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKG  159 (207)
Q Consensus        91 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~  159 (207)
                      +++|+..+++..+.. +.+...|..+..++...|++++|...|+...+..+. +......+-....+.+
T Consensus        80 ~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~~~~  146 (168)
T d1kt1a1          80 YTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQIFMCQKKAK  146 (168)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHH
Confidence            888888888887765 447778888888888899999999999888876432 4444444444443433

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.14  E-value=0.00012  Score=51.60  Aligned_cols=144  Identities=8%  Similarity=-0.011  Sum_probs=90.3

Q ss_pred             hcCChhHHHHHHHHHHhCCCCcch-hhHHHHH----------hhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 045498           52 TFNRLKEAVELFDKMVAQGITAEL-VTYNPLI----------HDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGL  120 (207)
Q Consensus        52 ~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll----------~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  120 (207)
                      .....++|+.++++..+..  |+. ..|+..-          ..+...+.+++|+..++...+...+ +...|..+..++
T Consensus        41 ~~~~~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~  117 (334)
T d1dcea1          41 AGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLL  117 (334)
T ss_dssp             TTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHH
Confidence            3344578888888887653  443 2332211          1233445567788888887766432 556666665555


Q ss_pred             hcCC--CHHHHHHHHHHHHhCCCCCChhhHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchh
Q 045498          121 CRVG--RWEEARKKLDQLSEKGLVPGVVTYN-ILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETD  197 (207)
Q Consensus       121 ~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~  197 (207)
                      ...+  ++++|...+....+...+ +...+. .....+...+.+++|...++...+.+. -+..+|..+...+.+.|+++
T Consensus       118 ~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~  195 (334)
T d1dcea1         118 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQP  195 (334)
T ss_dssp             HTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCC
T ss_pred             HHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCHH
Confidence            5544  478888888887776433 444443 344666677888888888887776632 25667777777777777776


Q ss_pred             HHH
Q 045498          198 RAS  200 (207)
Q Consensus       198 ~a~  200 (207)
                      +|.
T Consensus       196 ~A~  198 (334)
T d1dcea1         196 DSG  198 (334)
T ss_dssp             CSS
T ss_pred             HHH
Confidence            553

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.13  E-value=4.3e-06  Score=57.47  Aligned_cols=123  Identities=11%  Similarity=-0.050  Sum_probs=83.5

Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHH
Q 045498           50 LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA  129 (207)
Q Consensus        50 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a  129 (207)
                      ..+.|++++|+..+++..+.. |-+...+..+...++..|++++|...++...+.... +...+..+...+...+..+++
T Consensus         6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHHH
Confidence            456899999999999999885 667889999999999999999999999998876422 344444444444333333322


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498          130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK  174 (207)
Q Consensus       130 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  174 (207)
                      ..-...-...+-.++...+......+.+.|+.++|...++++.+.
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            211111111111223344445567778899999999999998875

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.97  E-value=6.3e-06  Score=56.63  Aligned_cols=119  Identities=16%  Similarity=0.055  Sum_probs=79.6

Q ss_pred             HhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHH
Q 045498           85 NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPG-VVTYNILINGLCKKGMIME  163 (207)
Q Consensus        85 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~~~~~~  163 (207)
                      ..+.|++++|+..+++..+.. +-+...+..+...++..|++++|.+.++...+..  |+ ...+..+...+...+..++
T Consensus         6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhccccHH
Confidence            456799999999999999886 4488999999999999999999999999998873  44 3444444444333333332


Q ss_pred             HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          164 ADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       164 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      +..-...-...+-+++...+......+...|+.++|.+.+++.
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a  125 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQI  125 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            2211110000111223344445566778899999999988764

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.95  E-value=8e-05  Score=46.09  Aligned_cols=70  Identities=4%  Similarity=-0.188  Sum_probs=39.6

Q ss_pred             HhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcC----------hhhHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 045498           51 CTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQG----------RFSAMALLQTLERDKYELNIEVYSLVIDGL  120 (207)
Q Consensus        51 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  120 (207)
                      -+.+.+++|+..|+...+.. |.+..++..+-.++...++          +++|...|++..+... -+...|..+..+|
T Consensus         8 ~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P-~~~~a~~~lG~~y   85 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP-KKDEAVWCIGNAY   85 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcc-hhhHHHhhHHHHH
Confidence            34556777777777777664 4555666666666654333          3455555555555432 2444555555555


Q ss_pred             hc
Q 045498          121 CR  122 (207)
Q Consensus       121 ~~  122 (207)
                      ..
T Consensus        86 ~~   87 (145)
T d1zu2a1          86 TS   87 (145)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.94  E-value=0.00022  Score=45.70  Aligned_cols=61  Identities=8%  Similarity=0.024  Sum_probs=54.7

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          145 VVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       145 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                      ...+..+...+.+.|++++|...++.+.+.. +-+...|..++.++.+.|+.++|.+.|+++
T Consensus        67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          67 VLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            4567889999999999999999999999873 458899999999999999999999999874

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.82  E-value=0.00027  Score=44.10  Aligned_cols=88  Identities=15%  Similarity=-0.010  Sum_probs=45.5

Q ss_pred             HHhcCCCHHHHHHHHHHHHhCCCC-CC----------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCC---
Q 045498          119 GLCRVGRWEEARKKLDQLSEKGLV-PG----------VVTYNILINGLCKKGMIMEADKLLVQMKEK-----GCFPD---  179 (207)
Q Consensus       119 ~~~~~~~~~~a~~~~~~~~~~g~~-~~----------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~p~---  179 (207)
                      .+.+.|++++|.+.|++..+.... |+          ...|+.+..+|.+.|++++|...+++..+.     ...++   
T Consensus        18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~   97 (156)
T d2hr2a1          18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK   97 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence            344555666666666555432110 11          234555666666666666666666655431     11111   


Q ss_pred             --hhhHHHHHHHHHhcCchhHHHHHHHhh
Q 045498          180 --STSFNTVIQGFLVKNETDRASSFLKKN  206 (207)
Q Consensus       180 --~~~~~~l~~~~~~~~~~~~a~~~~~~m  206 (207)
                        ..++..+..+|...|++++|.+.|++.
T Consensus        98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~A  126 (156)
T d2hr2a1          98 LWISAVYSRALALDGLGRGAEAMPEFKKV  126 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence              123455566666666666666666553

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.60  E-value=0.00038  Score=42.91  Aligned_cols=102  Identities=11%  Similarity=-0.083  Sum_probs=76.3

Q ss_pred             HhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcC----------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 045498           85 NWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRV----------GRWEEARKKLDQLSEKGLVPGVVTYNILING  154 (207)
Q Consensus        85 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~  154 (207)
                      |-+.+.+++|...++...+.. +-+...+..+-.++...          +.+++|...|++..+..+. +..+|..+..+
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~   84 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNA   84 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHH
Confidence            556778999999999998876 44677777777777643          4568899999999987644 67888888888


Q ss_pred             HHhcC-----------CHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 045498          155 LCKKG-----------MIMEADKLLVQMKEKGCFPDSTSFNTVIQGF  190 (207)
Q Consensus       155 ~~~~~-----------~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~  190 (207)
                      |...|           .+++|.+.|+...+.  .|+...+..-+..+
T Consensus        85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~  129 (145)
T d1zu2a1          85 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT  129 (145)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred             HHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH
Confidence            87654           367888888888875  57666665554444

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.54  E-value=0.00076  Score=41.93  Aligned_cols=27  Identities=15%  Similarity=0.142  Sum_probs=16.3

Q ss_pred             hHHHH--HHHHHhcCChhHHHHHHHHHHh
Q 045498           42 VYSSL--INGLCTFNRLKEAVELFDKMVA   68 (207)
Q Consensus        42 ~~~~l--l~~~~~~~~~~~a~~~~~~m~~   68 (207)
                      +|..+  ...+.+.|++++|+..|++..+
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~   37 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAME   37 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44444  3344556777777777777654

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=0.00011  Score=54.97  Aligned_cols=113  Identities=9%  Similarity=-0.116  Sum_probs=62.7

Q ss_pred             hHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 045498           77 TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLC  156 (207)
Q Consensus        77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~  156 (207)
                      .+..+-..+.+.++.++|...+.......   ....+..+...+...|++++|...|++..+..+. +...|+.|...+.
T Consensus       122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~  197 (497)
T d1ya0a1         122 KSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILAS  197 (497)
T ss_dssp             ---------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHH
T ss_pred             HHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence            33444444444555555554444333211   1245556667777788888888888887776433 5667888888888


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 045498          157 KKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN  194 (207)
Q Consensus       157 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~  194 (207)
                      ..|+..+|...|.+..... +|...++..|...+.+..
T Consensus       198 ~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         198 SKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             HTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHhh
Confidence            8888888888888777653 467777777777776543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=0.00046  Score=51.55  Aligned_cols=89  Identities=7%  Similarity=-0.182  Sum_probs=28.5

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 045498          112 VYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFL  191 (207)
Q Consensus       112 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~  191 (207)
                      .+..+-..+.+.|+.+.|...++......   ...++..+...+...|++++|...|++..+.. +-+..+|+.|...+.
T Consensus       122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~  197 (497)
T d1ya0a1         122 KSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILAS  197 (497)
T ss_dssp             ---------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHH
T ss_pred             HHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence            33344444444444444444443332210   11233344444444445555555544444431 112344444444444


Q ss_pred             hcCchhHHHHHHH
Q 045498          192 VKNETDRASSFLK  204 (207)
Q Consensus       192 ~~~~~~~a~~~~~  204 (207)
                      ..|+..+|...|.
T Consensus       198 ~~~~~~~A~~~y~  210 (497)
T d1ya0a1         198 SKGDHLTTIFYYC  210 (497)
T ss_dssp             HTTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHH
Confidence            4455444444443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.0031  Score=35.48  Aligned_cols=65  Identities=12%  Similarity=-0.077  Sum_probs=34.2

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhCC-----CCc-chhhHHHHHhhHhhhcChhhHHHHHHHHHhC
Q 045498           40 VFVYSSLINGLCTFNRLKEAVELFDKMVAQG-----ITA-ELVTYNPLIHDNWEKQGRFSAMALLQTLERD  104 (207)
Q Consensus        40 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-----~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~  104 (207)
                      +..+-.+-..+.+.|++++|+..|++..+..     ..+ ...+++.+-.++.+.|++++|...+++..+.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence            3444455666666677777766666654321     011 1234455555555555555555555555544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.22  E-value=0.012  Score=39.42  Aligned_cols=184  Identities=11%  Similarity=-0.092  Sum_probs=102.2

Q ss_pred             chhhhHHHHHhhhhhhhHHHHH-------HcCCCccHHhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCcchhhHH
Q 045498           11 NFHVYGIRINGMCKIREIDSAI-------KKGICLDVFVYSSLINGLCT----FNRLKEAVELFDKMVAQGITAELVTYN   79 (207)
Q Consensus        11 ~~~~~~~ll~~~~~~g~~~~a~-------~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~   79 (207)
                      |+..+..|-..+.+.+++++|+       +.|   +...+..|-..|..    ..++..+...+....+.+.+   ....
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~---~a~~   74 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYS---NGCH   74 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccccc---chhh
Confidence            3445555666666777777777       222   33444445555544    44566666666666555422   1111


Q ss_pred             HHHhhHh----hhcChhhHHHHHHHHHhCCC---------------------------------CccHHHHHHHHHHHhc
Q 045498           80 PLIHDNW----EKQGRFSAMALLQTLERDKY---------------------------------ELNIEVYSLVIDGLCR  122 (207)
Q Consensus        80 ~ll~~~~----~~~~~~~a~~~~~~m~~~~~---------------------------------~~~~~~~~~li~~~~~  122 (207)
                      .+...+.    ...+.+.|...++...+.|.                                 ..+...+..+...+..
T Consensus        75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~  154 (265)
T d1ouva_          75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA  154 (265)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhcc
Confidence            1111111    12334444444444433331                                 1133344444444443


Q ss_pred             ----CCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh--
Q 045498          123 ----VGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK----KGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLV--  192 (207)
Q Consensus       123 ----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~--  192 (207)
                          ..+...+...++...+.|   +......+-..|..    ..++++|...|+...+.|   ++..+..|...|.+  
T Consensus       155 ~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~  228 (265)
T d1ouva_         155 GRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGE  228 (265)
T ss_dssp             TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTS
T ss_pred             CCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCC
Confidence                345566666666666654   55555566555554    568889999999888875   55667777777765  


Q ss_pred             --cCchhHHHHHHHhh
Q 045498          193 --KNETDRASSFLKKN  206 (207)
Q Consensus       193 --~~~~~~a~~~~~~m  206 (207)
                        ..+.++|.++|++.
T Consensus       229 g~~~n~~~A~~~~~kA  244 (265)
T d1ouva_         229 GVTRNEKQAIENFKKG  244 (265)
T ss_dssp             SSSCCSTTHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHH
Confidence              34788888888763

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.0046  Score=34.73  Aligned_cols=65  Identities=12%  Similarity=-0.031  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC-----CCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498          110 IEVYSLVIDGLCRVGRWEEARKKLDQLSEKG-----LVPG-VVTYNILINGLCKKGMIMEADKLLVQMKEK  174 (207)
Q Consensus       110 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g-----~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  174 (207)
                      ...+..+-..+.+.|+++.|...|++..+..     ..++ ..+++.+..++.+.|++++|...+++..+.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence            3445556666667777777777666654321     1111 345666777777777777777777777665

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.78  E-value=0.043  Score=38.42  Aligned_cols=154  Identities=8%  Similarity=0.027  Sum_probs=67.5

Q ss_pred             cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccH--------
Q 045498           39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNI--------  110 (207)
Q Consensus        39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--------  110 (207)
                      .+.....++..|-..|.+++...+++..... -+++...++-++..|++.+ .++..+.++.... ...+..        
T Consensus        98 ~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~-~y~~~k~~~~c~~~  174 (336)
T d1b89a_          98 HADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQKMREHLELFWS-RVNIPKVLRAAEQA  174 (336)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHST-TSCHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hHHHHHHHHhccc-cCCHHHHHHHHHHc
Confidence            4444455566666666666666666655432 1344455556665555543 2222222222111 011000        


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 045498          111 EVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGF  190 (207)
Q Consensus       111 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~  190 (207)
                      ..|..++-.|.+.|+++.|..+   |.+.  .++..-....+..+.+..+++...++.....+.    ++...+.|+...
T Consensus       175 ~l~~elv~Ly~~~~~~~~A~~~---~i~~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~----~p~~i~~lL~~v  245 (336)
T d1b89a_         175 HLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF----KPLLLNDLLMVL  245 (336)
T ss_dssp             TCHHHHHHHHHHTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH----CGGGHHHHHHHH
T ss_pred             CChHHHHHHHHhcCCHHHHHHH---HHHc--chhhhhHHHHHHHHHccCChHHHHHHHHHHHHc----CHHHHHHHHHHh
Confidence            0122333333344444433222   1221  223333344455555666666555555554443    223345555555


Q ss_pred             HhcCchhHHHHHHH
Q 045498          191 LVKNETDRASSFLK  204 (207)
Q Consensus       191 ~~~~~~~~a~~~~~  204 (207)
                      ...-+..+..+.++
T Consensus       246 ~~~~d~~r~V~~~~  259 (336)
T d1b89a_         246 SPRLDHTRAVNYFS  259 (336)
T ss_dssp             GGGCCHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHH
Confidence            55555555555554

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.74  E-value=0.046  Score=38.27  Aligned_cols=81  Identities=7%  Similarity=0.014  Sum_probs=48.3

Q ss_pred             cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHH
Q 045498           39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVID  118 (207)
Q Consensus        39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  118 (207)
                      +..+|..+...+.+..+...+     ++.......++.....++..|-..|.+++...+++...... ..+...++.++.
T Consensus        68 ~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~  141 (336)
T d1b89a_          68 STRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI  141 (336)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHH
Confidence            344555555555555444332     12222233444555677778888888888888887765432 446667777888


Q ss_pred             HHhcCCC
Q 045498          119 GLCRVGR  125 (207)
Q Consensus       119 ~~~~~~~  125 (207)
                      .|++.+.
T Consensus       142 lyak~~~  148 (336)
T d1b89a_         142 LYSKFKP  148 (336)
T ss_dssp             HHHTTCH
T ss_pred             HHHHhCh
Confidence            8877643

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=96.64  E-value=0.043  Score=36.58  Aligned_cols=96  Identities=11%  Similarity=-0.035  Sum_probs=63.1

Q ss_pred             cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhh----hcChhhHHHHHHHHHhCCCCccHHHHH
Q 045498           39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWE----KQGRFSAMALLQTLERDKYELNIEVYS  114 (207)
Q Consensus        39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~  114 (207)
                      |+..+..|-..+.+.+++++|++.|++..+.|   +...+..|-..|..    ..+...+...+......+.+   ....
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~---~a~~   74 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYS---NGCH   74 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccccc---chhh
Confidence            45667777788888999999999999998887   33444445555554    55777888888887776632   2222


Q ss_pred             HHHHHHh----cCCCHHHHHHHHHHHHhCC
Q 045498          115 LVIDGLC----RVGRWEEARKKLDQLSEKG  140 (207)
Q Consensus       115 ~li~~~~----~~~~~~~a~~~~~~~~~~g  140 (207)
                      .+...+.    ...+.+.|...++...+.|
T Consensus        75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g  104 (265)
T d1ouva_          75 LLGNLYYSGQGVSQNTNKALQYYSKACDLK  104 (265)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             ccccccccccccchhhHHHHHHHhhhhhhh
Confidence            2222222    2456677777777665553

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.49  E-value=0.031  Score=33.24  Aligned_cols=112  Identities=12%  Similarity=-0.033  Sum_probs=72.6

Q ss_pred             CChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhc----CCCHHHH
Q 045498           54 NRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCR----VGRWEEA  129 (207)
Q Consensus        54 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a  129 (207)
                      .++++|++.|++..+.|.+   .....|.  .....+.++|...+++..+.|   +...+..+-..|..    ..+.++|
T Consensus         7 kd~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A   78 (133)
T d1klxa_           7 KDLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA   78 (133)
T ss_dssp             HHHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             cCHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHH
Confidence            3577888888888877632   2233332  234457778888888877776   33344444444432    4567888


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCC
Q 045498          130 RKKLDQLSEKGLVPGVVTYNILINGLCK----KGMIMEADKLLVQMKEKGC  176 (207)
Q Consensus       130 ~~~~~~~~~~g~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~  176 (207)
                      .+.|++..+.|   ++.....|-..|..    ..+.++|..+|+..-+.|.
T Consensus        79 ~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          79 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            88888888875   44555566566654    4577888888888777653

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.32  E-value=0.041  Score=32.69  Aligned_cols=108  Identities=9%  Similarity=-0.110  Sum_probs=78.5

Q ss_pred             hcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHH
Q 045498           88 KQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCK----KGMIME  163 (207)
Q Consensus        88 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~~~~~~  163 (207)
                      ..++++|.+.|++..+.|...   .+..+  +.....+.++|.+.+++..+.|   +......|-..|..    ..+.++
T Consensus         6 ~kd~~~A~~~~~kaa~~g~~~---a~~~l--~~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~   77 (133)
T d1klxa_           6 KKDLKKAIQYYVKACELNEMF---GCLSL--VSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK   77 (133)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTT---HHHHH--HTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             ccCHHHHHHHHHHHHHCCChh---hhhhh--ccccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHH
Confidence            357788999999988877332   22333  2345568899999999998876   55666666666664    467899


Q ss_pred             HHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCchhHHHHHHHhh
Q 045498          164 ADKLLVQMKEKGCFPDSTSFNTVIQGFLV----KNETDRASSFLKKN  206 (207)
Q Consensus       164 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m  206 (207)
                      |.++|++..+.|   ++.....|-..|..    ..+.++|.+++++.
T Consensus        78 A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~A  121 (133)
T d1klxa_          78 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA  121 (133)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHH
Confidence            999999998876   45566667677765    45889999998763

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.26  E-value=0.099  Score=29.10  Aligned_cols=50  Identities=12%  Similarity=0.143  Sum_probs=33.0

Q ss_pred             ChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 045498           90 GRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEK  139 (207)
Q Consensus        90 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  139 (207)
                      +.-++.+-+..+...++.|++.+..+.+++|-|.+++..|.++++-.+.+
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K   70 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK   70 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            34455666666666666677777777777777777777777777666544

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=94.57  E-value=0.21  Score=29.40  Aligned_cols=134  Identities=10%  Similarity=0.037  Sum_probs=65.7

Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCcchhhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHH
Q 045498           50 LCTFNRLKEAVELFDKMVAQGITAELVTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEA  129 (207)
Q Consensus        50 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a  129 (207)
                      +.-.|..++..+++.+..++.   +..-||=+|--....-+-+-+...++..-+.   .|          ..+++++...
T Consensus        12 ~ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FD----------ls~C~Nlk~v   75 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSV   75 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHH
T ss_pred             HHHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhh---cC----------chhhhcHHHH
Confidence            344577777777777776542   3334444443344444444455555444322   01          1223333333


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchhHHHHHHHh
Q 045498          130 RKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKNETDRASSFLKK  205 (207)
Q Consensus       130 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  205 (207)
                      ...+-.+-     .+...++..+....+.|+-++..++++++.+. -+|++.....+..+|-+.|...++-+++++
T Consensus        76 v~C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~  145 (161)
T d1wy6a1          76 VECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIE  145 (161)
T ss_dssp             HHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence            33322211     13344455555556666666666666655443 345555555566666666666666555554

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.35  E-value=0.23  Score=29.00  Aligned_cols=48  Identities=17%  Similarity=0.063  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045498          127 EEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEK  174 (207)
Q Consensus       127 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  174 (207)
                      +++..+++...+.+..-....+..|.-+|.+.|++++|...++.+.+.
T Consensus        55 ~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i  102 (124)
T d2pqrb1          55 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  102 (124)
T ss_dssp             HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            344445544444321101233344444455555555555555555443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.35  E-value=0.38  Score=28.06  Aligned_cols=69  Identities=14%  Similarity=0.165  Sum_probs=48.9

Q ss_pred             CcchhhHHHHHhhHhhh---cChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC
Q 045498           72 TAELVTYNPLIHDNWEK---QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRWEEARKKLDQLSEKG  140 (207)
Q Consensus        72 ~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g  140 (207)
                      .|+..|--....++.+.   .+.+++..++++..+.+..-....+.-+.-+|.+.|++++|.+.++.+.+..
T Consensus        32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie  103 (124)
T d2pqrb1          32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE  103 (124)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence            34444544455566654   4566799999998875422123566677778899999999999999999874

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.69  E-value=0.4  Score=26.60  Aligned_cols=76  Identities=20%  Similarity=0.169  Sum_probs=57.2

Q ss_pred             HHHHHHHHhc-CC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 045498          113 YSLVIDGLCR-VG-RWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGCFPDSTSFNTVIQG  189 (207)
Q Consensus       113 ~~~li~~~~~-~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~  189 (207)
                      |++--..|.. .. +.-++.+-+..+......|++....+.+++|-+.+++..|.++|+-.+.. +.++...|..+++-
T Consensus         7 F~aRy~~~F~~~~iD~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilqe   84 (105)
T d1v54e_           7 FDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE   84 (105)
T ss_dssp             HHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred             HHHHHHHHhcCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHHH
Confidence            3433334443 33 55567777888888889999999999999999999999999999998865 34456677776654

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=88.43  E-value=1.4  Score=25.78  Aligned_cols=118  Identities=14%  Similarity=0.109  Sum_probs=60.5

Q ss_pred             cHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcch-hhHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHH
Q 045498           39 DVFVYSSLINGLCTFNRLKEAVELFDKMVAQGITAEL-VTYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVI  117 (207)
Q Consensus        39 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li  117 (207)
                      +..-||-+|.-....-+-+...++++..-+. +..+. .-...++.++...+.                  +...++..+
T Consensus        33 ~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~-FDls~C~Nlk~vv~C~~~~n~------------------~se~vdlAL   93 (161)
T d1wy6a1          33 TKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FDLDKCQNLKSVVECGVINNT------------------LNEHVNKAL   93 (161)
T ss_dssp             CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SCGGGCSCTHHHHHHHHHTTC------------------CCHHHHHHH
T ss_pred             CccccceeeeecccccchHHHHHHHHHHhhh-cCchhhhcHHHHHHHHHHhcc------------------hHHHHHHHH
Confidence            4455666777777777777777777766432 11110 011112222221111                  223344555


Q ss_pred             HHHhcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 045498          118 DGLCRVGRWEEARKKLDQLSEKGLVPGVVTYNILINGLCKKGMIMEADKLLVQMKEKGC  176 (207)
Q Consensus       118 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  176 (207)
                      +.+.+.|+-+.-.++++.+.+.+ .|++...-.+..+|-+.|...++.+++.+.=+.|+
T Consensus        94 d~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~  151 (161)
T d1wy6a1          94 DILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE  151 (161)
T ss_dssp             HHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence            55666666666666666554432 44555555666666666666666666665555543

>d1mzba_ a.4.5.42 (A:) Ferric uptake regulation protein, FUR {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: FUR-like
domain: Ferric uptake regulation protein, FUR
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.50  E-value=1.8  Score=25.29  Aligned_cols=59  Identities=14%  Similarity=0.155  Sum_probs=35.6

Q ss_pred             HHHhCCCCcchhhHHHHHhhHhhh-cChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCC
Q 045498           65 KMVAQGITAELVTYNPLIHDNWEK-QGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVG  124 (207)
Q Consensus        65 ~m~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~  124 (207)
                      ++++.|+.++. .=..++..+... +.+-.|.++++.+.+.+..++..|..-.+..+...|
T Consensus         6 ~Lr~~GlR~T~-qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~i~~aTVYR~L~~l~e~g   65 (134)
T d1mzba_           6 ELRKAGLKVTL-PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG   65 (134)
T ss_dssp             HHHHTTCCCCH-HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHcCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHhcc
Confidence            35666766664 344455555554 346667777777777766666666665566655544

>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Programmed cell death 4, PDCD4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.36  E-value=2.8  Score=24.35  Aligned_cols=65  Identities=17%  Similarity=0.139  Sum_probs=44.8

Q ss_pred             hHHHHHhhHhhhcChhhHHHHHHHHHhCCCCccHHHHHHHHHHHhcCCCH--HHHHHHHHHHHhCCCC
Q 045498           77 TYNPLIHDNWEKQGRFSAMALLQTLERDKYELNIEVYSLVIDGLCRVGRW--EEARKKLDQLSEKGLV  142 (207)
Q Consensus        77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~--~~a~~~~~~~~~~g~~  142 (207)
                      -...+++-|...++.++|.+.++++...... ...++..+..++-+.++-  +.+..++..+...|+-
T Consensus         9 k~~~ll~EY~~~~D~~Ea~~~l~eL~~p~~~-~e~V~~~i~~ale~~~~~r~~~~~~Ll~~L~~~~~i   75 (129)
T d2nsza1           9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI   75 (129)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHcCCchhh-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHCCCC
Confidence            3567888888999999999999887643322 345555666666666554  3357788888887655

>d1mzba_ a.4.5.42 (A:) Ferric uptake regulation protein, FUR {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: FUR-like
domain: Ferric uptake regulation protein, FUR
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.20  E-value=2  Score=25.06  Aligned_cols=58  Identities=17%  Similarity=0.145  Sum_probs=27.7

Q ss_pred             HHhCCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 045498          136 LSEKGLVPGVVTYNILINGLCKK-GMIMEADKLLVQMKEKGCFPDSTSFNTVIQGFLVKN  194 (207)
Q Consensus       136 ~~~~g~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~  194 (207)
                      +.+.|++++. .-..++..+... +..-.|.++++.+.+.+..++..|...-+..+...|
T Consensus         7 Lr~~GlR~T~-qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~i~~aTVYR~L~~l~e~g   65 (134)
T d1mzba_           7 LRKAGLKVTL-PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG   65 (134)
T ss_dssp             HHHTTCCCCH-HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred             HHHcCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHhcc
Confidence            4455555443 223344444433 234455555555555555555554444445554444