Citrus Sinensis ID: 045521

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200----
Protein Sequence
VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATADIVIENLEACFLNKPLLTPVV
Secondary Structure (PSIPRED)
ccccHHHHHHccccEEEEEcccccccccHHHHHHcccEEEcccccccHHHHHHHHHHHHHHHHcHHHcccccccccccccccccEEEEEcccHHHHHHHHHHcccccEEEEEccccccccccccccccHHHHHHHHHcccccEEEcccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHccccEEEEEcccccccccHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHHHHccccccccccccccEcccccEEEEEcccHHHHHHHHHHHccccEEEEEccccccccHcccccEcHHHHHHHHHHccEEEEEEccccccccccHHHcccccEEEcccccccEHHHHHHHHHHHHHHHHHHcccccccccEc
Coil and Loop (DISEMBL)
vgadaelidslpkLEIVATCSagldkidlvkckekgiqvtntpdvltddvADAAIGLTLAVLRRFVrsedgemgyKLTTKisgrsvgiigLGRIGMAVAKRAEAFGCFisyrsraekpntkykgaLVDESELVSALLEDRLAAAVLDvfehepqvpeelfglenvvllphaasgteetRKATADIVIENLEacflnkplltpvv
Flexible Loop (DISEMBL)
vgadaelidslpklEIVATCsagldkidlvkckekgiqvtntpdvltddvADAAIGLTLAVLRRfvrsedgemgyklttkisgrsvgiIGLGRIGMAVAKRAEAFGCFIsyrsraekpntkykGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATADIVIENLeacflnkplltpvv
Low Complexity Region (SEG)
VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATADIVIENLEACFLNKPLLTPVV
Disordered region (IsUnstruct)
*******IDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATADIVIENLEACFLNKPLL****
Disordered Region (DISOPRED)
VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATADIVIENLEACFLNKPLLTPVV
Disordered Region (DISEMBL)
VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATADIVIENLEACFLNKPLLTPVV
Disordered Region (DISPRO)
VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATADIVIENLEACFLNKPLLTPVV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATADIVIENLEACFLNKPLLTPVV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	204	2.2.26 [Sep-21-2011]
Q9CA90	313	Glyoxylate/hydroxypyruvat	yes	no	0.995	0.648	0.558	8e-62
Q9LE33	323	Glyoxylate/hydroxypyruvat	no	no	0.970	0.613	0.405	4e-45
B6YWH0	334	Glyoxylate reductase OS=T	yes	no	0.906	0.553	0.367	5e-33
Q8U3Y2	336	Glyoxylate reductase OS=P	yes	no	0.906	0.550	0.371	3e-32
Q9C4M5	331	Glyoxylate reductase OS=T	N/A	no	0.911	0.561	0.388	2e-31
Q5JEZ2	333	Glyoxylate reductase OS=P	yes	no	0.916	0.561	0.362	2e-28
A1RYE4	339	Glyoxylate reductase OS=T	yes	no	0.936	0.563	0.342	4e-28
B1L765	332	Glyoxylate reductase OS=K	yes	no	0.916	0.563	0.357	9e-27
A6TFG7	323	Glyoxylate/hydroxypyruvat	yes	no	0.916	0.578	0.325	2e-25
Q9YAW4	335	Glyoxylate reductase OS=A	yes	no	0.916	0.558	0.363	2e-25

>sp|Q9CA90|HPR2_ARATH Glyoxylate/hydroxypyruvate reductase A HPR2 OS=Arabidopsis thaliana GN=HPR2 PE=1 SV=1

 Score =  236 bits (602), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 144/258 (55%), Positives = 161/258 (62%), Gaps = 55/258 (21%)

Query: 2   GADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAV 61
           GADA+LI  LP LEIV++ S GLDKIDL KCKEKGI+VTNTPDVLT+DVAD AIGL LA+
Sbjct: 56  GADAQLISDLPNLEIVSSFSVGLDKIDLGKCKEKGIRVTNTPDVLTEDVADLAIGLILAL 115

Query: 62  LR------RFVRSEDGEMG-YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR 114
           LR      R+VRS   + G ++LTTK SG+SVGIIGLGRIG A+AKRAEAF C I+Y SR
Sbjct: 116 LRRLCECDRYVRSGKWKQGEFQLTTKFSGKSVGIIGLGRIGTAIAKRAEAFSCPINYYSR 175

Query: 115 AEKPNTKYK------------------------------------------------GAL 126
             KP+  YK                                                G  
Sbjct: 176 TIKPDVAYKYYPTVVDLAQNSDILVVACPLTEQTRHIVDRQVMDALGAKGVLINIGRGPH 235

Query: 127 VDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATADIV 186
           VDE EL+ AL E RL  A LDVFE EP VPEELFGLENVVLLPH  SGT ETR A AD+V
Sbjct: 236 VDEQELIKALTEGRLGGAALDVFEQEPHVPEELFGLENVVLLPHVGSGTVETRNAMADLV 295

Query: 187 IENLEACFLNKPLLTPVV 204
           + NLEA F  K LLTPVV
Sbjct: 296 VGNLEAHFSGKSLLTPVV 313

Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate (HP) into glycolate and glycerate in the cytoplasm, thus providing a cytosolic bypass to the photorespiratory core cycle. Mostly active in the presence of NADPH and hydroxypyruvate.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 8EC: 1

>sp|Q9LE33|HPR3_ARATH Glyoxylate/hydroxypyruvate reductase HPR3 OS=Arabidopsis thaliana GN=HPR3 PE=2 SV=1

 Score =  181 bits (458), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 103/254 (40%), Positives = 142/254 (55%), Gaps = 56/254 (22%)

Query: 6   ELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR-- 63
           EL+  LP L+I+   S G+D IDL  CK +GI +TN  +  +DDVAD A+GL ++VLR  
Sbjct: 67  ELLSHLPSLQILVCTSVGIDHIDLAACKRRGIVITNAGNAFSDDVADCAVGLLISVLRRI 126

Query: 64  ----RFVRSED-GEMG-YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK 117
               R+VRS +  + G ++L +K+SG+ VGI+GLG IG  VAKR E+FGC ISY SR++K
Sbjct: 127 PAADRYVRSGNWAKFGDFQLGSKVSGKRVGIVGLGSIGSFVAKRLESFGCVISYNSRSQK 186

Query: 118 PNTKY------------------------------------------------KGALVDE 129
            ++ Y                                                +G L+DE
Sbjct: 187 QSSPYRYYSDILSLAENNDVLVLCCSLTDETHHIVNREVMELLGKDGVVINVGRGKLIDE 246

Query: 130 SELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATADIVIEN 189
            E+V  L++  +  A LDVFE+EP VP+ELFGL+NVVL PH A  T  +    A I + N
Sbjct: 247 KEMVKCLVDGVIGGAGLDVFENEPAVPQELFGLDNVVLSPHFAVATPGSLDNVAQIALAN 306

Query: 190 LEACFLNKPLLTPV 203
           L+A F N+PLL+PV
Sbjct: 307 LKAFFSNRPLLSPV 320

Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate (HP) into glycolate and glycerate. Mostly active in the presence of NADPH and glyoxylate.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 1

>sp|B6YWH0|GYAR_THEON Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1

 Score =  140 bits (354), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 93/253 (36%), Positives = 120/253 (47%), Gaps = 68/253 (26%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
           DAE+ D+ P+L+IVA  + G D ID+ +  + G+ +TNTPDVLT+  AD A  L LA  R
Sbjct: 58  DAEVFDAAPRLKIVANYAVGYDNIDIEEATKMGVYITNTPDVLTNATADMAWVLLLATAR 117

Query: 64  R------FVRSEDGEMGYK---------LTTKISGRSVGIIGLGRIGMAVAKRAEAFGCF 108
           R      FVRS  GE   +         L   + GR++GI+G GRIG A+A+RA+ FG  
Sbjct: 118 RLIEADKFVRS--GEWKKRGVAWHPLMFLGYDVYGRTIGIVGFGRIGQAIARRAKGFGMR 175

Query: 109 ISYRSRAEKPNTKY---------------------------------------------- 122
           I Y SR  KP  +                                               
Sbjct: 176 ILYNSRTRKPEVEKELGAEFMPLDELLKESDFVVLVVPLTKETYHMINEERLKLMKPTAI 235

Query: 123 -----KGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEE 177
                +G +VD   LV AL E  +A A LDVFE EP   EELF L+NVVL PH  S T  
Sbjct: 236 LVNIARGKVVDTEALVKALREGWIAGAGLDVFEEEPYYHEELFSLDNVVLAPHIGSATYG 295

Query: 178 TRKATADIVIENL 190
            R+  A++V  NL
Sbjct: 296 AREGMAELVARNL 308

Thermococcus onnurineus (strain NA1) (taxid: 523850)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q8U3Y2|GYAR_PYRFU Glyoxylate reductase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=gyaR PE=3 SV=1

 Score =  138 bits (347), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 94/253 (37%), Positives = 121/253 (47%), Gaps = 68/253 (26%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
           D E+ ++ P+L IVA  + G D ID+ +   +GI VTNTPDVLT+  AD A  L LA  R
Sbjct: 58  DQEVFENAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTPDVLTNATADHAFALLLATAR 117

Query: 64  ------RFVRSEDGEMGYK---------LTTKISGRSVGIIGLGRIGMAVAKRAEAFGCF 108
                 +FVRS  GE   K         L  ++ G+++GI+G GRIG A+A+RA+ F   
Sbjct: 118 HVVKGDKFVRS--GEWKRKGIAWHPKWFLGYELYGKTIGIVGFGRIGQAIARRAKGFNMR 175

Query: 109 ISYRSRAEK----------------------------PNTK------------------- 121
           I Y SR  K                            P TK                   
Sbjct: 176 ILYYSRTRKSQAEKELGAEYRPLEEVLKESDFVILAVPLTKETMYMINEERLKLMKPTAI 235

Query: 122 ----YKGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEE 177
                +G +VD   L+ AL E  +A A LDVFE EP   EELF L+NVVL PH  S T E
Sbjct: 236 LVNIARGKVVDTKALIKALKEGWIAGAGLDVFEEEPYYNEELFSLDNVVLTPHIGSATFE 295

Query: 178 TRKATADIVIENL 190
            R+A A++V  NL
Sbjct: 296 AREAMAELVARNL 308

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9C4M5|GYAR_THELI Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1

 Score =  135 bits (340), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/252 (38%), Positives = 128/252 (50%), Gaps = 66/252 (26%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
           D EL+++ PKL+I+A  + G D ID+ +  ++GI VTNTP VLTD  AD A  L LAV R
Sbjct: 58  DKELLENAPKLKIIAQYAVGYDNIDIEEATKRGIYVTNTPGVLTDATADLAFALLLAVAR 117

Query: 64  R------FVRS---EDGEMGYK----LTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFIS 110
           R      FVRS   +  E+G+     L   + G+++GI+G GRIG A+AKRA+ FG  I 
Sbjct: 118 RIVEADAFVRSGEWKKSEVGWHPLMFLGYGLKGKTLGIVGFGRIGQALAKRAKGFGMKII 177

Query: 111 YRSRAEKP---------------------------------------------------- 118
           Y SR  KP                                                    
Sbjct: 178 YYSRTRKPEAEEEIGAEYVDFETLLKESDFISLHVPLTKETYHMIGEKELKLMKPNAILI 237

Query: 119 NTKYKGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEET 178
           NT  +GA+VD + L+ AL E  +A A LDVFE EP   EELF L+NVVL PH  S T E 
Sbjct: 238 NTS-RGAVVDTNALIKALKEGWIAGAGLDVFEEEPYYNEELFKLKNVVLAPHIGSATHEA 296

Query: 179 RKATADIVIENL 190
           R+  A++V +NL
Sbjct: 297 REGMAELVAKNL 308

Thermococcus litoralis (taxid: 2265)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q5JEZ2|GYAR_PYRKO Glyoxylate reductase OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=gyaR PE=3 SV=1

 Score =  125 bits (315), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/251 (36%), Positives = 120/251 (47%), Gaps = 64/251 (25%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
           D+E+ D+ P+L IVA  + G D ID+ +   +GI VTNTPDVLTD  AD A  L LA  R
Sbjct: 58  DSEVFDAAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTPDVLTDATADFAWTLLLATAR 117

Query: 64  RFVRSE----DGEMG---------YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFIS 110
           R + ++     GE           + L   + G+++GI+G GRIG AVA+RA  FG  I 
Sbjct: 118 RLIEADHFTRSGEWKRRGIAWHPRWFLGYDVYGKTIGIVGFGRIGQAVARRARGFGMRIL 177

Query: 111 YRSRAEKP-------------------------------NTKY----------------- 122
           Y SR+ KP                                T+Y                 
Sbjct: 178 YYSRSRKPEAEKELGAEFRSLEDLLRESDFVVLAVPLTKETQYMINEERLRLMKKTAILV 237

Query: 123 ---KGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETR 179
              +G +VD   L+ AL E  +A A LDV+E EP   EELF L+NVVL PH  S T   R
Sbjct: 238 NIARGKVVDTKALMKALKEGWIAGAGLDVYEEEPYYNEELFSLKNVVLAPHIGSATYGAR 297

Query: 180 KATADIVIENL 190
           +  A++V  NL
Sbjct: 298 EGMAELVARNL 308

Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (taxid: 69014)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|A1RYE4|GYAR_THEPD Glyoxylate reductase OS=Thermofilum pendens (strain Hrk 5) GN=gyaR PE=3 SV=1

 Score =  124 bits (311), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 87/254 (34%), Positives = 123/254 (48%), Gaps = 63/254 (24%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
           DAE++D+ P L++++T S G D ID+ +  ++GI VT+TP VLTD VA+  +GL LAV R
Sbjct: 60  DAEVMDAAPNLKVISTYSVGFDHIDIPEATKRGIYVTHTPGVLTDAVAEFTVGLILAVTR 119

Query: 64  RFVRSED----GEMG-----YKLT-TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRS 113
           R V ++     G+       Y LT  ++ G+++G++GLGRIG+A AKR  +F   I Y  
Sbjct: 120 RIVEADKIIRTGQWDKPWNPYFLTGPELKGKTIGLVGLGRIGVATAKRLSSFDVKILYYD 179

Query: 114 RAEK-------PNTKY-------------------------------------------- 122
              +       PN ++                                            
Sbjct: 180 IERRWDVETVIPNMEFTDLDTLLEKSDIVSIHVPLTKETYHLINEERLRKMKKTAYLINT 239

Query: 123 -KGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEE-LFGLENVVLLPHAASGTEETRK 180
            +G +VD   LV AL E  +A A LDVFE EP  P   L   +NVVL PH AS T E R+
Sbjct: 240 ARGPVVDTEALVKALKEGWIAGAALDVFEQEPLPPNHPLTKFDNVVLAPHIASATIEARQ 299

Query: 181 ATADIVIENLEACF 194
             A++   NL A  
Sbjct: 300 RMAELAARNLIAVL 313

Thermofilum pendens (strain Hrk 5) (taxid: 368408)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B1L765|GYAR_KORCO Glyoxylate reductase OS=Korarchaeum cryptofilum (strain OPF8) GN=gyaR PE=3 SV=1

 Score =  120 bits (300), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 89/249 (35%), Positives = 123/249 (49%), Gaps = 62/249 (24%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
           DAE+ ++ PKL IVA  + G D ID+ +  ++GI VTNTP VLT+  AD A  L +A  R
Sbjct: 58  DAEVFEAAPKLRIVAQYAVGYDNIDVKEATKRGIYVTNTPGVLTETTADFAFALLMAAAR 117

Query: 64  ------RFVRSEDGEMGYK----LTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRS 113
                 R+VR    ++ +     L   + GR++GI+G+GRIG AVA+RA+ FG  I Y  
Sbjct: 118 RVVEADRYVREGKWKVAWHPMMMLGYDVYGRTLGIVGMGRIGAAVARRAKGFGMRILYYD 177

Query: 114 RAEKPNTKYK--------GALVDESELVS------------------------------- 134
              + + + +          L++ES+ VS                               
Sbjct: 178 SIRREDFEKELGVEYVPLEKLLEESDFVSLHVPLTEETYHMIGEEQLRRMKRTAILVNTS 237

Query: 135 ------------ALLEDRLAAAVLDVFEHEPQVPEE-LFGLENVVLLPHAASGTEETRKA 181
                       AL E  +A A LDVFE EP  P++ L  LENVVL PHAAS + ETR  
Sbjct: 238 RGKVVDQKALYKALKEGWIAGAGLDVFEQEPIPPDDPLLKLENVVLAPHAASASHETRSR 297

Query: 182 TADIVIENL 190
            A++V ENL
Sbjct: 298 MAEMVAENL 306

Korarchaeum cryptofilum (strain OPF8) (taxid: 374847)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|A6TFG7|GHRB_KLEP7 Glyoxylate/hydroxypyruvate reductase B OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=ghrB PE=3 SV=1

 Score =  115 bits (289), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/249 (32%), Positives = 114/249 (45%), Gaps = 62/249 (24%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
           DA L++ +PKL   +T S G D  D+     + + + +TP VLT+ VAD  + L L+  R
Sbjct: 57  DAALLEKMPKLRATSTVSVGYDNFDVEALNARRVLLMHTPTVLTETVADTVMALVLSTAR 116

Query: 64  RFV----RSEDGEMGYKL-----TTKISGRSVGIIGLGRIGMAVAKRAE-AFGCFISYRS 113
           R V    R + GE    +      T +  +++GI+G+GRIGMA+A+RA   FG  I Y +
Sbjct: 117 RVVEVAERVKAGEWTKSIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGFGMPILYNA 176

Query: 114 RAEKP------NTKY--------------------------------------------- 122
           R + P      N +Y                                             
Sbjct: 177 RRQHPQAEERFNARYCDLDTLLQEADFVCLILPLSEETHHLFGQAQFAKMKSSAIFINAG 236

Query: 123 KGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEE-LFGLENVVLLPHAASGTEETRKA 181
           +G +VDE  L++AL    + AA LDVFEHEP   +  L  L NVV LPH  S T ETR  
Sbjct: 237 RGPVVDEQALIAALQNGEIHAAGLDVFEHEPLAKDSPLLSLPNVVALPHIGSATHETRYN 296

Query: 182 TADIVIENL 190
            A   ++NL
Sbjct: 297 MAACAVDNL 305

Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively.

Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) (taxid: 272620)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 1

>sp|Q9YAW4|GYAR_AERPE Glyoxylate reductase OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=gyaR PE=3 SV=2

 Score =  115 bits (287), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/256 (36%), Positives = 119/256 (46%), Gaps = 69/256 (26%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEK-GIQVTNTPDVLTDDVADAAIGLTLAVL 62
           D +L+   P+L IVA  + G D ID V+C  + GI VTNTP VLT+  A+    L LA  
Sbjct: 59  DCDLLSQAPRLRIVAQMAVGFDNID-VECATRLGIYVTNTPGVLTEATAEFTWALILAAA 117

Query: 63  RRFVRSED----GEMGYKLTT----------KISGRSVGIIGLGRIGMAVAKRAEAFGCF 108
           RR V ++     GE  ++L T          ++ G+++GI+G+GRIG  VA+  +AFG  
Sbjct: 118 RRVVEADHFVRWGEW-WRLRTGWHPMMMLGVELRGKTLGILGMGRIGSRVAEIGKAFGMR 176

Query: 109 ISYRSRAEK----------------------------PNTKYKGALVDESE--------- 131
           I Y SR+ K                            P T     L+ ESE         
Sbjct: 177 IIYHSRSRKREIEKELGAEYRSLEDLLRESDILSIHLPLTDETRHLIGESELKLMKKTAI 236

Query: 132 --------------LVSALLEDRLAAAVLDVFEHEPQVPEE-LFGLENVVLLPHAASGTE 176
                         LV AL E  +AAA LDVFE EP  P   L   +NVVL PHAAS T 
Sbjct: 237 LVNTGRGAIVDTGALVKALREGWIAAAALDVFEEEPLNPNHPLTAFKNVVLAPHAASATR 296

Query: 177 ETRKATADIVIENLEA 192
           ETR   A +  ENL A
Sbjct: 297 ETRLRMAMMAAENLVA 312

Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) (taxid: 272557)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
255549954	314	glycerate dehydrogenase, putative [Ricin	0.995	0.646	0.600	7e-71
225442601	313	PREDICTED: glyoxylate reductase [Vitis v	0.995	0.648	0.585	4e-70
224073961	314	predicted protein [Populus trichocarpa]	0.995	0.646	0.581	3e-69
212374928	333	Chain A, Structure Of Hydroxyphenylpyruv	0.995	0.609	0.577	2e-68
62816284	313	hydroxyphenylpyruvate reductase (HPPR) [	0.995	0.648	0.577	3e-68
449519625	346	PREDICTED: LOW QUALITY PROTEIN: glyoxyla	0.995	0.586	0.577	4e-68
448278786	313	hydroxyphenylpyruvate reductase [Salvia	0.995	0.648	0.577	4e-68
449448024	346	PREDICTED: glyoxylate/hydroxypyruvate re	0.995	0.586	0.577	5e-68
72256935	313	putative hydroxyphenylpyruvate reductase	0.995	0.648	0.573	5e-68
357468421	313	Glyoxylate/hydroxypyruvate reductase B [	0.995	0.648	0.581	2e-67

>gi|255549954|ref|XP_002516028.1| glycerate dehydrogenase, putative [Ricinus communis] gi|223544933|gb|EEF46448.1| glycerate dehydrogenase, putative [Ricinus communis]

 Score =  272 bits (695), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 155/258 (60%), Positives = 169/258 (65%), Gaps = 55/258 (21%)

Query: 2   GADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAV 61
           GADAELID LPKLEIV++ S GLDK+DL KCK KGI+VTNTPDVLTDDVAD AIGL LAV
Sbjct: 57  GADAELIDQLPKLEIVSSYSVGLDKVDLAKCKGKGIRVTNTPDVLTDDVADLAIGLMLAV 116

Query: 62  LR------RFVRSEDGEMG-YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR 114
           LR      R+VRS     G YKLTTK +G+SVGIIGLGRIGMA+AKRAEAF C ISY +R
Sbjct: 117 LRRLCESDRYVRSGQWRKGDYKLTTKFTGKSVGIIGLGRIGMAIAKRAEAFSCPISYFAR 176

Query: 115 AEKPNTKYK------------------------------------------------GAL 126
           +EKP+ KYK                                                G  
Sbjct: 177 SEKPDMKYKYYPSVVELAANCQILVVACALTEETHHIVNREVINALGPKGVLINIGRGPH 236

Query: 127 VDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATADIV 186
           VDE ELVSALLE RL  A LDVFE EP VPE+LF LENVVLLPH  SGT ETR A AD+V
Sbjct: 237 VDEPELVSALLEGRLGGAGLDVFEDEPNVPEQLFSLENVVLLPHVGSGTVETRTAMADLV 296

Query: 187 IENLEACFLNKPLLTPVV 204
           + NLEA FLNKPLLTPVV
Sbjct: 297 VGNLEAHFLNKPLLTPVV 314

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442601|ref|XP_002284520.1| PREDICTED: glyoxylate reductase [Vitis vinifera] gi|297743257|emb|CBI36124.3| unnamed protein product [Vitis vinifera]

 Score =  269 bits (688), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 151/258 (58%), Positives = 171/258 (66%), Gaps = 55/258 (21%)

Query: 2   GADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAV 61
           GADA LID+LPKLEIVA+ S G DKIDLVKCKE+GI VTNTPDVLTDDVAD+AIGL LA 
Sbjct: 56  GADAGLIDALPKLEIVASYSVGFDKIDLVKCKERGITVTNTPDVLTDDVADSAIGLALAT 115

Query: 62  LR------RFVRSEDGEMG-YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR 114
           LR      RFVRS   + G ++LTTK SG+S+GI+GLGRIG A+AKRAEAFG  ISY SR
Sbjct: 116 LRRMCVCDRFVRSGKWKKGDFELTTKFSGKSIGIVGLGRIGSAIAKRAEAFGSSISYHSR 175

Query: 115 AEKPNTKYK------------------------------------------------GAL 126
           +EKP + YK                                                GA 
Sbjct: 176 SEKPESNYKYYSNIIDLATNCQILFVACALTKETHHIVDRKVIDALGPKGIIINIGRGAH 235

Query: 127 VDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATADIV 186
           +DE ELVSALLE RLA A LDVFEHEP+VPEEL GLENVVL PHA S T ET  A +D+V
Sbjct: 236 IDEPELVSALLEGRLAGAGLDVFEHEPEVPEELLGLENVVLQPHAGSDTVETSVAMSDLV 295

Query: 187 IENLEACFLNKPLLTPVV 204
           I+NLEACF NKP+LTPV+
Sbjct: 296 IDNLEACFQNKPVLTPVI 313

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073961|ref|XP_002304205.1| predicted protein [Populus trichocarpa] gi|118488851|gb|ABK96235.1| unknown [Populus trichocarpa x Populus deltoides] gi|222841637|gb|EEE79184.1| predicted protein [Populus trichocarpa]

 Score =  266 bits (680), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 150/258 (58%), Positives = 169/258 (65%), Gaps = 55/258 (21%)

Query: 2   GADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAV 61
           GADA+LI  LP LEIV++ S GLDKIDL KC+E+GI+VTNTPDVLTDDVAD AIGL LAV
Sbjct: 57  GADAQLIHQLPNLEIVSSFSVGLDKIDLAKCRERGIRVTNTPDVLTDDVADLAIGLMLAV 116

Query: 62  LR------RFVRSEDGEMG-YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR 114
           LR      R+VRS   + G YKLTTK +G+SVGIIGLGRIG+A+AKRAEAF C ISY +R
Sbjct: 117 LRRLCPSDRYVRSGQWKRGDYKLTTKFTGKSVGIIGLGRIGLAIAKRAEAFSCPISYHTR 176

Query: 115 AEKPNTKYK------------------------------------------------GAL 126
           AEK + KYK                                                G  
Sbjct: 177 AEKSDVKYKYYPSVVELAANCQILVVACALTEETRHIINREVINALGPKGVLINIGRGPH 236

Query: 127 VDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATADIV 186
           VDE ELVSAL+E RL  A LDVF+ EP VPEELFGLENVVLLPH  SGT ETRK  AD+V
Sbjct: 237 VDEPELVSALVEGRLGGAGLDVFQDEPNVPEELFGLENVVLLPHVGSGTMETRKEMADLV 296

Query: 187 IENLEACFLNKPLLTPVV 204
           + NLEA FLNKPLLTPV+
Sbjct: 297 VGNLEAHFLNKPLLTPVL 314

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212374928|pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu gi|212374938|pdb|3BAZ|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blumei In Complex With Nadp+

 Score =  263 bits (673), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 149/258 (57%), Positives = 171/258 (66%), Gaps = 55/258 (21%)

Query: 2   GADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAV 61
           GADAELID+LPKLEIV++ S GLDK+DL+KC+EKG++VTNTPDVLTDDVAD AIGL LAV
Sbjct: 76  GADAELIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAV 135

Query: 62  LRR------FVRSEDGEMG-YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR 114
           LRR      +VR    + G +KLTTK SG+ VGIIGLGRIG+AVA+RAEAF C ISY SR
Sbjct: 136 LRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSR 195

Query: 115 AEKPNTKY------------------------------------------------KGAL 126
           ++KPNT Y                                                +G  
Sbjct: 196 SKKPNTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPH 255

Query: 127 VDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATADIV 186
           VDE ELVSAL+E RL  A LDVFE EP+VPE+LFGLENVVLLPH  SGT ETRK  AD+V
Sbjct: 256 VDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLV 315

Query: 187 IENLEACFLNKPLLTPVV 204
           + NLEA F  KPLLTPVV
Sbjct: 316 VGNLEAHFSGKPLLTPVV 333

Source: Solenostemon scutellarioides

Species: Solenostemon scutellarioides

Genus: Solenostemon

Family: Lamiaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|62816284|emb|CAD47810.2| hydroxyphenylpyruvate reductase (HPPR) [Solenostemon scutellarioides]

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 149/258 (57%), Positives = 171/258 (66%), Gaps = 55/258 (21%)

Query: 2   GADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAV 61
           GADAELID+LPKLEIV++ S GLDK+DL+KC+EKG++VTNTPDVLTDDVAD AIGL LAV
Sbjct: 56  GADAELIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAV 115

Query: 62  LRR------FVRSEDGEMG-YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR 114
           LRR      +VR    + G +KLTTK SG+ VGIIGLGRIG+AVA+RAEAF C ISY SR
Sbjct: 116 LRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSR 175

Query: 115 AEKPNTKY------------------------------------------------KGAL 126
           ++KPNT Y                                                +G  
Sbjct: 176 SKKPNTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPH 235

Query: 127 VDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATADIV 186
           VDE ELVSAL+E RL  A LDVFE EP+VPE+LFGLENVVLLPH  SGT ETRK  AD+V
Sbjct: 236 VDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLV 295

Query: 187 IENLEACFLNKPLLTPVV 204
           + NLEA F  KPLLTPVV
Sbjct: 296 VGNLEAHFSGKPLLTPVV 313

Source: Solenostemon scutellarioides

Species: Solenostemon scutellarioides

Genus: Solenostemon

Family: Lamiaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449519625|ref|XP_004166835.1| PREDICTED: LOW QUALITY PROTEIN: glyoxylate/hydroxypyruvate reductase A HPR2-like [Cucumis sativus]

 Score =  263 bits (671), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 149/258 (57%), Positives = 172/258 (66%), Gaps = 55/258 (21%)

Query: 2   GADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAV 61
           GADA LID+LPKLEIV++ S GLDKIDL KCKEKGI+VTNTPDVLT+DVAD AIGL +AV
Sbjct: 89  GADATLIDALPKLEIVSSFSVGLDKIDLKKCKEKGIRVTNTPDVLTEDVADLAIGLIIAV 148

Query: 62  LR------RFVRSEDGEMG-YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR 114
           LR      R+VRS   ++G YKLTTK SG+SVGIIGLGRIG+A+AKRAEAF C ISY SR
Sbjct: 149 LRRLCECDRYVRSGKWKIGNYKLTTKFSGKSVGIIGLGRIGLAIAKRAEAFNCPISYYSR 208

Query: 115 AEKPNTKYK------------------------------------------------GAL 126
            +K +TKYK                                                G  
Sbjct: 209 TKKEDTKYKYYSNLLELASNSDILIVACALTKETHHIVNREVIDALGPKGVLINIGRGPH 268

Query: 127 VDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATADIV 186
           VDE ELV+AL+E RL  A LDVFE+EP+VP+ELF LENVVL+PH  SGT ETRK  AD+V
Sbjct: 269 VDEPELVAALVEGRLGGAGLDVFENEPEVPQELFALENVVLVPHIGSGTVETRKEMADLV 328

Query: 187 IENLEACFLNKPLLTPVV 204
           + NLE+ F NKPLLTPVV
Sbjct: 329 LXNLESHFSNKPLLTPVV 346

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|448278786|gb|AGE44245.1| hydroxyphenylpyruvate reductase [Salvia officinalis]

 Score =  263 bits (671), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 149/258 (57%), Positives = 172/258 (66%), Gaps = 55/258 (21%)

Query: 2   GADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAV 61
           GADA LID+LPKLEIV+  S GLDK+DLVKCKEKG++VTNTPDVLTDDVAD AIGL LAV
Sbjct: 56  GADAALIDALPKLEIVSNFSVGLDKVDLVKCKEKGVRVTNTPDVLTDDVADLAIGLILAV 115

Query: 62  LRR------FVRSEDGEMG-YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR 114
           LRR      +VR    ++G +KLTTK SG+ VGIIGLGRIG+AVA+RAEAF C I+Y SR
Sbjct: 116 LRRICECDKYVRRGAWKLGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPINYYSR 175

Query: 115 AEKPNTKY------------------------------------------------KGAL 126
           ++K NT Y                                                +G  
Sbjct: 176 SKKANTNYTYYGSIVELASNSDILVVACALTPETTHIVNREVIDALGPKGVLINIGRGPH 235

Query: 127 VDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATADIV 186
           VDE+ELVSAL+E RL  A LDVFE EP+VPE+LFGLENVVLLPH  SGT ETRKA AD+V
Sbjct: 236 VDEAELVSALVEGRLGGAGLDVFEKEPEVPEQLFGLENVVLLPHVGSGTVETRKAMADLV 295

Query: 187 IENLEACFLNKPLLTPVV 204
           + NLEA F +KPLLTPVV
Sbjct: 296 LGNLEAHFSSKPLLTPVV 313

Source: Salvia officinalis

Species: Salvia officinalis

Genus: Salvia

Family: Lamiaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448024|ref|XP_004141766.1| PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2-like [Cucumis sativus]

 Score =  262 bits (670), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 149/258 (57%), Positives = 172/258 (66%), Gaps = 55/258 (21%)

Query: 2   GADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAV 61
           GADA LID+LPKLEIV++ S GLDKIDL KCKEKGI+VTNTPDVLT+DVAD AIGL +AV
Sbjct: 89  GADATLIDALPKLEIVSSFSVGLDKIDLKKCKEKGIRVTNTPDVLTEDVADLAIGLIIAV 148

Query: 62  LR------RFVRSEDGEMG-YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR 114
           LR      R+VRS   ++G YKLTTK SG+SVGIIGLGRIG+A+AKRAEAF C ISY SR
Sbjct: 149 LRRLCECDRYVRSGKWKIGNYKLTTKFSGKSVGIIGLGRIGLAIAKRAEAFNCPISYYSR 208

Query: 115 AEKPNTKYK------------------------------------------------GAL 126
            +K +TKYK                                                G  
Sbjct: 209 TKKEDTKYKYYSNLLELASNSDILIVACALTKETHHIVNREVIDALGPKGVLINIGRGPH 268

Query: 127 VDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATADIV 186
           VDE ELV+AL+E RL  A LDVFE+EP+VP+ELF LENVVL+PH  SGT ETRK  AD+V
Sbjct: 269 VDEPELVAALVEGRLGGAGLDVFENEPEVPQELFALENVVLVPHIGSGTVETRKEMADLV 328

Query: 187 IENLEACFLNKPLLTPVV 204
           + NLE+ F NKPLLTPVV
Sbjct: 329 LGNLESHFSNKPLLTPVV 346

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|72256935|gb|AAZ67354.1| putative hydroxyphenylpyruvate reductase [Salvia miltiorrhiza]

 Score =  262 bits (670), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 148/258 (57%), Positives = 174/258 (67%), Gaps = 55/258 (21%)

Query: 2   GADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAV 61
           GADA++IDSLPKLEIV++ S GLD+IDL+KCKEKGI+VTNTPDVLT+DVAD AIGL LAV
Sbjct: 56  GADADIIDSLPKLEIVSSFSVGLDRIDLLKCKEKGIRVTNTPDVLTEDVADLAIGLMLAV 115

Query: 62  LRR------FVRSEDGEMG-YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR 114
           LRR      +VRS   ++G +KLTTK SG+ VGIIGLGRIG+AVA+RAEAF C I+Y SR
Sbjct: 116 LRRICECDKYVRSGAWKLGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPINYYSR 175

Query: 115 AEKPNTKY------------------------------------------------KGAL 126
           ++K NT Y                                                +G  
Sbjct: 176 SKKANTNYTYYGSVVELASNSDILVVACALTPETTHIVNREVMDALGPKGVLINIGRGPH 235

Query: 127 VDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATADIV 186
           VDE+ELVSAL+E RL  A LDVFE EP+VPE+LFGLENVVLLPH  SGT ETRK  AD+V
Sbjct: 236 VDEAELVSALVEGRLGGAGLDVFEKEPEVPEQLFGLENVVLLPHVGSGTVETRKVMADLV 295

Query: 187 IENLEACFLNKPLLTPVV 204
           + NLEA F +KPLLTPVV
Sbjct: 296 LGNLEAHFSSKPLLTPVV 313

Source: Salvia miltiorrhiza

Species: Salvia miltiorrhiza

Genus: Salvia

Family: Lamiaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468421|ref|XP_003604495.1| Glyoxylate/hydroxypyruvate reductase B [Medicago truncatula] gi|355505550|gb|AES86692.1| Glyoxylate/hydroxypyruvate reductase B [Medicago truncatula]

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 150/258 (58%), Positives = 165/258 (63%), Gaps = 55/258 (21%)

Query: 2   GADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAV 61
           GAD+ELID+LP LEIV++ S G+DKIDL KCKEKGI VTNTPDVLTDDVAD AIGL L +
Sbjct: 56  GADSELIDALPNLEIVSSFSVGVDKIDLNKCKEKGICVTNTPDVLTDDVADLAIGLMLTL 115

Query: 62  LR------RFVRSEDGEMG-YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR 114
           LR      RFVRS D + G YKLTTK SG++VGIIGLGRIG A+AKRAE F C I Y SR
Sbjct: 116 LRRICECDRFVRSGDWKHGDYKLTTKFSGKTVGIIGLGRIGTAIAKRAEGFNCSICYYSR 175

Query: 115 AEKPNTKYK------------------------------------------------GAL 126
            +K   KYK                                                G  
Sbjct: 176 TQKQEPKYKYYPNVVELASNCDILVVACSLTDETHHIINREVINALGPKGFLINIGRGKH 235

Query: 127 VDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATADIV 186
           VDE ELVSALLE RL  A LDVFE+EP VPEELFGLENVVLLPH  SGT ETR A AD+V
Sbjct: 236 VDEPELVSALLEGRLGGAGLDVFENEPHVPEELFGLENVVLLPHVGSGTVETRTAMADLV 295

Query: 187 IENLEACFLNKPLLTPVV 204
           + NLEA FL KPLLTP+V
Sbjct: 296 LGNLEAHFLGKPLLTPLV 313

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
TAIR|locus:2017824	313	AT1G79870 [Arabidopsis thalian	0.598	0.389	0.674	8.7e-65
TAIR|locus:2043684	338	AT2G45630 [Arabidopsis thalian	0.558	0.337	0.467	1.8e-42
UNIPROTKB|Q0BWN7	328	gyaR "Glyoxylate reductase" [H	0.509	0.317	0.478	7.9e-33
UNIPROTKB|Q483F8	311	CPS_2082 "Putative glyoxylate	0.553	0.363	0.395	5.3e-30
TIGR_CMR|CPS_2082	311	CPS_2082 "putative glyoxylate	0.553	0.363	0.395	5.3e-30
TIGR_CMR|SPO_0632	328	SPO_0632 "D-isomer specific 2-	0.544	0.338	0.421	2.3e-29
TIGR_CMR|SPO_0913	317	SPO_0913 "D-isomer specific 2-	0.397	0.255	0.432	1e-28
UNIPROTKB|Q5TM04	328	2-KGalARE "Glyoxylate/hydroxyp	0.563	0.350	0.392	1.2e-28
ASPGD|ASPL0000061938	327	AN0775 [Emericella nidulans (t	0.642	0.400	0.359	3.5e-27
UNIPROTKB|Q4KI01	324	ghrB2 "Glyoxylate/hydroxypyruv	0.539	0.339	0.35	4.1e-27

TAIR|locus:2017824 AT1G79870 [Arabidopsis thaliana (taxid:3702)]

 Score = 403 (146.9 bits), Expect = 8.7e-65, Sum P(2) = 8.7e-65
 Identities = 87/129 (67%), Positives = 101/129 (78%)

Query:     2 GADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAV 61
             GADA+LI  LP LEIV++ S GLDKIDL KCKEKGI+VTNTPDVLT+DVAD AIGL LA+
Sbjct:    56 GADAQLISDLPNLEIVSSFSVGLDKIDLGKCKEKGIRVTNTPDVLTEDVADLAIGLILAL 115

Query:    62 LRR------FVRSEDGEMG-YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR 114
             LRR      +VRS   + G ++LTTK SG+SVGIIGLGRIG A+AKRAEAF C I+Y SR
Sbjct:   116 LRRLCECDRYVRSGKWKQGEFQLTTKFSGKSVGIIGLGRIGTAIAKRAEAFSCPINYYSR 175

Query:   115 AEKPNTKYK 123
               KP+  YK
Sbjct:   176 TIKPDVAYK 184

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=ISS

GO:0009854 "oxidative photosynthetic carbon pathway" evidence=IMP

GO:0016618 "hydroxypyruvate reductase activity" evidence=IDA

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2043684 AT2G45630 [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 1.8e-42, Sum P(2) = 1.8e-42
 Identities = 57/122 (46%), Positives = 76/122 (62%)

Query:     5 AELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR 64
             A+LI  LP L +V T SAG+D +DLV+C+ +GI V N     ++DVAD A+GL + V RR
Sbjct:    82 ADLIRILPNLRLVVTTSAGVDHVDLVECRRRGISVANAGSSFSEDVADTAVGLLIDVFRR 141

Query:    65 ------FVRSEDGEM-G-YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116
                   FV+     + G Y L +K+  + +GI+GLG IG  VA R +AFGC ISY SR  
Sbjct:   142 ISAANRFVKQRFWPLKGDYPLGSKLGRKRIGIVGLGSIGSKVATRLDAFGCQISYSSRNR 201

Query:   117 KP 118
             KP
Sbjct:   202 KP 203

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA;ISS

GO:0048037 "cofactor binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|Q0BWN7 gyaR "Glyoxylate reductase" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 225 (84.3 bits), Expect = 7.9e-33, Sum P(2) = 7.9e-33
 Identities = 55/115 (47%), Positives = 72/115 (62%)

Query:    13 KLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRS---- 68
             +L ++A   AG+D ID+    ++GI VTNTP VLTDD AD A+ L LAV RR        
Sbjct:    71 QLRLIAQFGAGVDNIDVASAVQRGITVTNTPGVLTDDTADVAMALILAVPRRMHEGVQIM 130

Query:    69 EDGEM-GYKLT----TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKP 118
             E G+  G+  T     ++SG+ +GIIG+GRIG AVA+RA AFG  I Y +R  KP
Sbjct:   131 EAGKFDGWTPTWMMGRRLSGKRLGIIGMGRIGQAVARRARAFGMQIHYHNR--KP 183

GO:0046487 "glyoxylate metabolic process" evidence=ISS

GO:0047964 "glyoxylate reductase activity" evidence=ISS

UNIPROTKB|Q483F8 CPS_2082 "Putative glyoxylate reductase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 184 (69.8 bits), Expect = 5.3e-30, Sum P(2) = 5.3e-30
 Identities = 49/124 (39%), Positives = 64/124 (51%)

Query:     4 DAELIDSLPK-LEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVL 62
             D   I  LP+ ++++A    G D IDL     KGI VTNTP V+T+D AD A  L LA  
Sbjct:    50 DHNFITQLPESIKLIANIGVGYDNIDLAAATAKGIAVTNTP-VVTEDTADLAFSLILAAS 108

Query:    63 RRFVRSE----DGEMGYK-----LTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRS 113
             R+   +E    +G+         L   + G  +GIIG G IG AVA+RA+AF   I Y  
Sbjct:   109 RQLTANEKFLRNGQWSATNPIGCLGKTVHGAKLGIIGFGEIGQAVARRAKAFNMEIFYHG 168

Query:   114 RAEK 117
                K
Sbjct:   169 PRRK 172

GO:0008152 "metabolic process" evidence=ISS

GO:0047964 "glyoxylate reductase activity" evidence=ISS

TIGR_CMR|CPS_2082 CPS_2082 "putative glyoxylate reductase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 184 (69.8 bits), Expect = 5.3e-30, Sum P(2) = 5.3e-30
 Identities = 49/124 (39%), Positives = 64/124 (51%)

Query:     4 DAELIDSLPK-LEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVL 62
             D   I  LP+ ++++A    G D IDL     KGI VTNTP V+T+D AD A  L LA  
Sbjct:    50 DHNFITQLPESIKLIANIGVGYDNIDLAAATAKGIAVTNTP-VVTEDTADLAFSLILAAS 108

Query:    63 RRFVRSE----DGEMGYK-----LTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRS 113
             R+   +E    +G+         L   + G  +GIIG G IG AVA+RA+AF   I Y  
Sbjct:   109 RQLTANEKFLRNGQWSATNPIGCLGKTVHGAKLGIIGFGEIGQAVARRAKAFNMEIFYHG 168

Query:   114 RAEK 117
                K
Sbjct:   169 PRRK 172

GO:0008152 "metabolic process" evidence=ISS

GO:0047964 "glyoxylate reductase activity" evidence=ISS

TIGR_CMR|SPO_0632 SPO_0632 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 217 (81.4 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
 Identities = 51/121 (42%), Positives = 73/121 (60%)

Query:     4 DAELIDSL-PKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVL 62
             DA L+     ++ ++A   AG+D ID+   +++GI V+NTP VLTDD AD  + L LAV 
Sbjct:    61 DAGLLAQAGERMRLIANYGAGVDHIDVATARQRGILVSNTPGVLTDDTADMTMALILAVT 120

Query:    63 RRF-----VRSEDGEMGYKLTT----KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRS 113
             RR      V  ++   G+  T     ++ GR +GI+G+GRIG AVA+RA AFG  I Y +
Sbjct:   121 RRIPEGLAVMQKNEWTGWAPTALLGGRVGGRRLGILGMGRIGQAVARRASAFGMQIHYHN 180

Query:   114 R 114
             R
Sbjct:   181 R 181

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

TIGR_CMR|SPO_0913 SPO_0913 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 174 (66.3 bits), Expect = 1.0e-28, Sum P(2) = 1.0e-28
 Identities = 35/81 (43%), Positives = 52/81 (64%)

Query:   123 KGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKAT 182
             +G +VDE+ L++AL E ++A A LDV+E EP+VPE L  +E V LLPH  + TEE R + 
Sbjct:   236 RGEVVDEAALIAALSERQIAGAGLDVYEFEPKVPEALRAMEQVTLLPHLGTATEEVRSSM 295

Query:   183 ADIVIENLEACFLNKPLLTPV 203
               + ++N+ A    + L  PV
Sbjct:   296 GHMALDNVAAFAAGRDLPNPV 316

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

UNIPROTKB|Q5TM04 2-KGalARE "Glyoxylate/hydroxypyruvate reductase B" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 197 (74.4 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
 Identities = 49/125 (39%), Positives = 70/125 (56%)

Query:     4 DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
             DAEL+D  P+L  VA+ S G+D  D+    ++ I ++NTPDVLT+  AD    L LA  R
Sbjct:    57 DAELLDLAPRLRAVASVSVGVDNYDIDYLTQRRILLSNTPDVLTETTADTGFALILATAR 116

Query:    64 RFVRSED----GEMGYKLT-----TKISGRSVGIIGLGRIGMAVAKRAE-AFGCFISYRS 113
             R V   +    G+    +      T + G+++GIIG+GRIG A+A+R    FG  + Y S
Sbjct:   117 RVVELANLVRAGQWQRNIGPAHFGTDVHGKTLGIIGMGRIGEALAQRGHFGFGMPLIYHS 176

Query:   114 RAEKP 118
                KP
Sbjct:   177 TRPKP 181

GO:0016618 "hydroxypyruvate reductase activity" evidence=ISS

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=ISS

GO:0046487 "glyoxylate metabolic process" evidence=ISS

ASPGD|ASPL0000061938 AN0775 [Emericella nidulans (taxid:162425)]

 Score = 184 (69.8 bits), Expect = 3.5e-27, Sum P(2) = 3.5e-27
 Identities = 50/139 (35%), Positives = 74/139 (53%)

Query:     4 DAELIDSLPK-LEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVL 62
             DAELI  LPK L+ +    AG D ID+  C EKGI V++TP  + +  AD  I L +  L
Sbjct:    66 DAELISLLPKSLKYICHNGAGYDNIDIPACSEKGISVSSTPVAVNNATADVGIFLMIGAL 125

Query:    63 RR-FV---RSEDGEMGYKLTT--KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116
             R+ +V      +G+   + T      G+ +GI+G+G IG  +A RA AFG  I Y +R+ 
Sbjct:   126 RQAYVPLTAIREGKWHGQTTLGHDPKGKVLGILGMGGIGREMANRARAFGMTIQYHNRSR 185

Query:   117 -KPNTKYKGALVDESELVS 134
               P  +     V   +L++
Sbjct:   186 LSPELEQGAKYVSFDDLLA 204

GO:0005575 "cellular_component" evidence=ND

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0004013 "adenosylhomocysteinase activity" evidence=IEA

UNIPROTKB|Q4KI01 ghrB2 "Glyoxylate/hydroxypyruvate reductase B" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 177 (67.4 bits), Expect = 4.1e-27, Sum P(2) = 4.1e-27
 Identities = 42/120 (35%), Positives = 68/120 (56%)

Query:     8 IDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVR 67
             +++  +LE+V++ S G D  DL    E+G+ +TNTPDVLT+  AD A  L ++  RR   
Sbjct:    61 LENAARLEVVSSISVGYDNYDLAYFNERGLMLTNTPDVLTESTADLAFALLMSSARRVAE 120

Query:    68 ----SEDGE----MGYKLT-TKISGRSVGIIGLGRIGMAVAKRAE-AFGCFISYRSRAEK 117
                 ++ G+    +G  L    + G+++GI+G+G IG A+A+R    FG  I Y   + K
Sbjct:   121 LDAWTKAGQWQASVGPALFGCDVHGKTLGIVGMGNIGAAIARRGRLGFGMPILYSGNSRK 180

GO:0008873 "gluconate 2-dehydrogenase activity" evidence=ISS

GO:0016618 "hydroxypyruvate reductase activity" evidence=ISS

GO:0019521 "D-gluconate metabolic process" evidence=ISS

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CA90	HPR2_ARATH	1, ., 1, ., 1, ., 8, 1	0.5581	0.9950	0.6485	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00034379001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (313 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00022240001	SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (401 aa)	•					•	•		0.545

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	204
cd12156	301	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase,	7e-90
cd05301	309	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr	4e-64
COG1052	324	COG1052, LdhA, Lactate dehydrogenase and related d	4e-61
cd12178	317	cd12178, 2-Hacid_dh_13, Putative D-isomer specific	9e-54
cd05198	302	cd05198, formate_dh_like, Formate/glycerate and re	2e-52
cd12168	321	cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l	1e-51
PRK13243	333	PRK13243, PRK13243, glyoxylate reductase; Reviewed	1e-46
cd12172	306	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat	3e-46
pfam00389	312	pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxy	8e-42
COG0111	324	COG0111, SerA, Phosphoglycerate dehydrogenase and	8e-41
cd05303	301	cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P	8e-41
cd12175	311	cd12175, 2-Hacid_dh_11, Putative D-isomer specific	4e-39
cd12161	315	cd12161, GDH_like_1, Putative glycerate dehydrogen	2e-37
cd12162	307	cd12162, 2-Hacid_dh_4, Putative D-isomer specific	1e-36
cd12173	304	cd12173, PGDH_4, Phosphoglycerate dehydrogenases,	2e-36
cd05299	312	cd05299, CtBP_dh, C-terminal binding protein (CtBP	2e-35
cd12171	310	cd12171, 2-Hacid_dh_10, Putative D-isomer specific	2e-35
cd01619	323	cd01619, LDH_like, D-Lactate and related Dehydroge	2e-32
PRK15409	323	PRK15409, PRK15409, bifunctional glyoxylate/hydrox	2e-31
PRK13581	526	PRK13581, PRK13581, D-3-phosphoglycerate dehydroge	3e-30
TIGR01327	525	TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas	5e-30
cd12157	318	cd12157, PTDH, Thermostable Phosphite Dehydrogenas	2e-29
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	8e-29
cd12187	329	cd12187, LDH_like_1, D-Lactate and related Dehydro	1e-27
cd12169	308	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat	5e-27
pfam02826	175	pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro	2e-26
PRK08410	311	PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; P	4e-25
cd12177	321	cd12177, 2-Hacid_dh_12, Putative D-isomer specific	5e-25
cd12165	314	cd12165, 2-Hacid_dh_6, Putative D-isomer specific	6e-24
cd12179	306	cd12179, 2-Hacid_dh_14, Putative D-isomer specific	1e-23
cd12183	328	cd12183, LDH_like_2, D-Lactate and related Dehydro	1e-22
cd12174	305	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat	4e-22
cd12185	322	cd12185, HGDH_LDH_like, Putative Lactate dehydroge	1e-19
cd12176	304	cd12176, PGDH_3, Phosphoglycerate dehydrogenases,	3e-19
PRK06487	317	PRK06487, PRK06487, glycerate dehydrogenase; Provi	5e-18
cd12164	306	cd12164, GDH_like_2, Putative glycerate dehydrogen	2e-17
cd12159	303	cd12159, 2-Hacid_dh_2, Putative D-isomer specific	3e-16
cd12186	329	cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydr	5e-15
PRK08605	332	PRK08605, PRK08605, D-lactate dehydrogenase; Valid	2e-14
PLN02306	386	PLN02306, PLN02306, hydroxypyruvate reductase	2e-14
PRK06932	314	PRK06932, PRK06932, glycerate dehydrogenase; Provi	2e-14
cd12158	343	cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Deh	3e-14
cd12155	314	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2	9e-14
cd12166	300	cd12166, 2-Hacid_dh_7, Putative D-isomer specific	1e-13
cd12167	330	cd12167, 2-Hacid_dh_8, Putative D-isomer specific	4e-13
cd12155	314	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2	6e-13
PLN02928	347	PLN02928, PLN02928, oxidoreductase family protein	2e-12
PRK11790	409	PRK11790, PRK11790, D-3-phosphoglycerate dehydroge	4e-12
PRK00257	381	PRK00257, PRK00257, erythronate-4-phosphate dehydr	8e-12
cd12167	330	cd12167, 2-Hacid_dh_8, Putative D-isomer specific	2e-10
PRK06436	303	PRK06436, PRK06436, glycerate dehydrogenase; Provi	2e-10
cd12170	294	cd12170, 2-Hacid_dh_9, Putative D-isomer specific	3e-10
cd12184	330	cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydro	3e-10
cd05302	348	cd05302, FDH, NAD-dependent Formate Dehydrogenase	6e-10
PRK07574	385	PRK07574, PRK07574, formate dehydrogenase; Provisi	8e-10
PRK12480	330	PRK12480, PRK12480, D-lactate dehydrogenase; Provi	1e-09
cd12160	310	cd12160, 2-Hacid_dh_3, Putative D-isomer specific	4e-09
cd12180	308	cd12180, 2-Hacid_dh_15, Putative D-isomer specific	1e-08
cd12163	334	cd12163, 2-Hacid_dh_5, Putative D-isomer specific	9e-07
PLN03139	386	PLN03139, PLN03139, formate dehydrogenase; Provisi	1e-06
cd12163	334	cd12163, 2-Hacid_dh_5, Putative D-isomer specific	4e-06
PRK15469	312	PRK15469, ghrA, bifunctional glyoxylate/hydroxypyr	0.002
cd12154	310	cd12154, FDH_GDH_like, Formate/glycerate dehydroge	0.004

>gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase

 Score =  265 bits (680), Expect = 7e-90
 Identities = 110/248 (44%), Positives = 140/248 (56%), Gaps = 55/248 (22%)

Query: 2   GADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAV 61
           G  A LI +LP LE++A+   G D IDL   + +GI+VTNTP VLTDDVAD A+GL LAV
Sbjct: 53  GLSAALIAALPALELIASFGVGYDGIDLDAARARGIRVTNTPGVLTDDVADLAVGLLLAV 112

Query: 62  LR------RFVRSED-GEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR 114
           LR      RFVR+    +  + LT K+SG+ VGI+GLGRIG A+A+R EAFG  I+Y  R
Sbjct: 113 LRRIPAADRFVRAGRWPKGAFPLTRKVSGKRVGIVGLGRIGRAIARRLEAFGMEIAYHGR 172

Query: 115 AEKPNTKYK------------------------------------------------GAL 126
             KP+  Y+                                                G++
Sbjct: 173 RPKPDVPYRYYASLLELAAESDVLVVACPGGPATRHLVNAEVLEALGPDGVLVNVARGSV 232

Query: 127 VDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATADIV 186
           VDE+ L++AL E R+A A LDVFE+EP VP  L  L+NVVL PH AS T ETR+A  D+V
Sbjct: 233 VDEAALIAALQEGRIAGAGLDVFENEPNVPAALLDLDNVVLTPHIASATVETRRAMGDLV 292

Query: 187 IENLEACF 194
           + NLEA F
Sbjct: 293 LANLEAFF 300

Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301

>gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)

 Score =  199 bits (510), Expect = 4e-64
 Identities = 94/253 (37%), Positives = 120/253 (47%), Gaps = 63/253 (24%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
           DAEL+D+ P L+++A  S G D ID+   K +GI VTNTPDVLTD  AD A  L LA  R
Sbjct: 56  DAELLDAAPPLKVIANYSVGYDHIDVDAAKARGIPVTNTPDVLTDATADLAFALLLAAAR 115

Query: 64  RFVRSED----------GEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRS 113
           R V  +                 L T + G+++GI+G+GRIG AVA+RA+ FG  I Y +
Sbjct: 116 RVVEGDRFVRAGEWKGWSPTLL-LGTDLHGKTLGIVGMGRIGQAVARRAKGFGMKILYHN 174

Query: 114 RAEKP------NTKYK-------------------------------------------- 123
           R+ KP        +Y                                             
Sbjct: 175 RSRKPEAEEELGARYVSLDELLAESDFVSLHCPLTPETRHLINAERLALMKPTAILINTA 234

Query: 124 -GALVDESELVSALLEDRLAAAVLDVFEHEPQVPE-ELFGLENVVLLPHAASGTEETRKA 181
            G +VDE  LV AL   ++A A LDVFE EP   +  L  L NVVLLPH  S T ETR A
Sbjct: 235 RGGVVDEDALVEALKSGKIAGAGLDVFEPEPLPADHPLLTLPNVVLLPHIGSATVETRTA 294

Query: 182 TADIVIENLEACF 194
            A++  +NL A  
Sbjct: 295 MAELAADNLLAVL 307

D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309

>gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

 Score =  192 bits (491), Expect = 4e-61
 Identities = 94/268 (35%), Positives = 124/268 (46%), Gaps = 65/268 (24%)

Query: 1   VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLA 60
              DAE+++ LP L+++AT SAG D +DL   KE+GI VTN P   T+ VA+ A+ L LA
Sbjct: 54  DRIDAEVLEKLPGLKLIATRSAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILA 113

Query: 61  VLRRFVR----------SEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFIS 110
           + RR             S  G     L   + G+++GIIGLGRIG AVA+R + FG  + 
Sbjct: 114 LARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVL 173

Query: 111 YRSRAEKPNTKYK----------------------------------------------- 123
           Y  R+  P  + +                                               
Sbjct: 174 YYDRSPNPEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILV 233

Query: 124 ----GALVDESELVSALLEDRLAAAVLDVFEHEP-QVPEELFGLEN---VVLLPHAASGT 175
               G LVDE  L+ AL   ++A A LDVFE+EP      L  L+N   VVL PH AS T
Sbjct: 234 NTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASAT 293

Query: 176 EETRKATADIVIENLEACFLNKPLLTPV 203
           EE RKA A++ +ENLEA F        V
Sbjct: 294 EEARKAMAELALENLEAFFDGGVPPNEV 321

Length = 324

>gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  173 bits (442), Expect = 9e-54
 Identities = 90/261 (34%), Positives = 120/261 (45%), Gaps = 61/261 (23%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
           D E+ID+   L+I+A   AG D ID+   KEKGI VTNTP V T+  A+   GL LA+ R
Sbjct: 56  DKEIIDAAKNLKIIANYGAGFDNIDVDYAKEKGIPVTNTPAVSTEPTAELTFGLILALAR 115

Query: 64  RFVR-----SEDGEMG----YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR 114
           R           G +G    + L  +++G+++GIIG+GRIG AVA+RA+AFG  I Y +R
Sbjct: 116 RIAEGDRLMRRGGFLGWAPLFFLGHELAGKTLGIIGMGRIGQAVARRAKAFGMKILYYNR 175

Query: 115 AEKP--------------------------NTKY-------------------------- 122
                                         +  Y                          
Sbjct: 176 HRLSEETEKELGATYVDLDELLKESDFVSLHAPYTPETHHLIDAAAFKLMKPTAYLINAA 235

Query: 123 KGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKAT 182
           +G LVDE  LV AL    +A A LDVFE EP+V  EL  L+NV+L PH  + T E R A 
Sbjct: 236 RGPLVDEKALVDALKTGEIAGAALDVFEFEPEVSPELKKLDNVILTPHIGNATVEARDAM 295

Query: 183 ADIVIENLEACFLNKPLLTPV 203
           A    +N+ +    K     V
Sbjct: 296 AKEAADNIISFLEGKRPKNIV 316

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317

>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family

 Score =  169 bits (431), Expect = 2e-52
 Identities = 85/249 (34%), Positives = 115/249 (46%), Gaps = 59/249 (23%)

Query: 3   ADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVL 62
             AE++   PKL+ +    AG+D IDL   K++GI VTN P    + VA+ A+GL LA+L
Sbjct: 53  VTAEVLAKAPKLKFIQVAGAGVDNIDLDAAKKRGITVTNVPGANAEAVAEHALGLLLALL 112

Query: 63  RRFVRSED----GEMGYKL---TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR- 114
           RR  R++     G           ++ G++VGI+GLGRIG  VAKR +AFG  + Y  R 
Sbjct: 113 RRLPRADAAVRRGWGWLWAGFPGYELEGKTVGIVGLGRIGQRVAKRLQAFGMKVLYYDRT 172

Query: 115 -----AEKPNTKY---------------------------------------------KG 124
                 E    +                                              +G
Sbjct: 173 RKPEPEEDLGFRVVSLDELLAQSDVVVLHLPLTPETRHLINEEELALMKPGAVLVNTARG 232

Query: 125 ALVDESELVSALLEDRLAAAVLDVFEHEPQVPEE-LFGLENVVLLPHAASGTEETRKATA 183
            LVDE  L+ AL   ++A A LDVFE EP   +  L  L NV+L PH A  TEE R+  A
Sbjct: 233 GLVDEDALLRALKSGKIAGAALDVFEPEPLPADHPLLELPNVILTPHIAGYTEEARERMA 292

Query: 184 DIVIENLEA 192
           +I +ENLE 
Sbjct: 293 EIAVENLER 301

Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302

>gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases

 Score =  168 bits (428), Expect = 1e-51
 Identities = 88/252 (34%), Positives = 123/252 (48%), Gaps = 61/252 (24%)

Query: 4   DAELIDSLPK-LEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVL 62
           D ELI  LP  L+I+A   AG D+ID+    ++GIQV+NTP  + +  AD A+ L L  L
Sbjct: 66  DEELISPLPPSLKIIAHAGAGYDQIDVDALTKRGIQVSNTPGAVDEATADTALFLILGAL 125

Query: 63  RRFVRSE--------DGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISY--R 112
           R F R+E         G +   L     G+++GI+GLG IG A+A++A AFG  I Y  R
Sbjct: 126 RNFSRAERSARAGKWRGFLDLTLAHDPRGKTLGILGLGGIGKAIARKAAAFGMKIIYHNR 185

Query: 113 SRA----EKPNTKY---------------------------------------------- 122
           SR     EK    Y                                              
Sbjct: 186 SRLPEELEKALATYYVSLDELLAQSDVVSLNCPLTAATRHLINKKEFAKMKDGVIIVNTA 245

Query: 123 KGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKAT 182
           +GA++DE  LV AL   ++A+A LDVFE+EP+V   L  + NV LLPH  + T ET++  
Sbjct: 246 RGAVIDEDALVDALESGKVASAGLDVFENEPEVNPGLLKMPNVTLLPHMGTLTVETQEKM 305

Query: 183 ADIVIENLEACF 194
            ++V+EN+EA  
Sbjct: 306 EELVLENIEAFL 317

D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321

>gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed

 Score =  156 bits (395), Expect = 1e-46
 Identities = 98/259 (37%), Positives = 122/259 (47%), Gaps = 76/259 (29%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
           D E+ ++ P+L IVA  + G D ID+ +   +GI VTNTP VLT+  AD A  L LA  R
Sbjct: 58  DCEVFEAAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATAR 117

Query: 64  R------FVRSEDGE-------------MGYKLTTKISGRSVGIIGLGRIGMAVAKRAEA 104
           R      FVRS  GE             +GY +     G+++GIIG GRIG AVA+RA+ 
Sbjct: 118 RLVEADHFVRS--GEWKRRGVAWHPLMFLGYDV----YGKTIGIIGFGRIGQAVARRAKG 171

Query: 105 FGCFISYRSRAEKP------NTKYK----------------------------------- 123
           FG  I Y SR  KP        +Y+                                   
Sbjct: 172 FGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMK 231

Query: 124 ----------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAAS 173
                     G +VD   LV AL E  +A A LDVFE EP   EELF L+NVVL PH  S
Sbjct: 232 PTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIGS 291

Query: 174 GTEETRKATADIVIENLEA 192
            T E R+  A++V ENL A
Sbjct: 292 ATFEAREGMAELVAENLIA 310

Length = 333

>gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  154 bits (391), Expect = 3e-46
 Identities = 71/243 (29%), Positives = 108/243 (44%), Gaps = 56/243 (23%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
             E++ + P+L++++    G D IDL   K++GI VTNTP   ++ VA+  IGL LA+ R
Sbjct: 59  TEEVLAAAPRLKVISRYGVGYDNIDLEAAKKRGIVVTNTPGANSNSVAELTIGLMLALAR 118

Query: 64  RFVRS----EDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFI------SYRS 113
           +  ++      G     + T++ G+++GIIGLGRIG AVA+R   FG  +          
Sbjct: 119 QIPQADREVRAGGWDRPVGTELYGKTLGIIGLGRIGKAVARRLSGFGMKVLAYDPYPDEE 178

Query: 114 RAEKPNTKY---------------------------------------------KGALVD 128
            A++   ++                                             +G LVD
Sbjct: 179 FAKEHGVEFVSLEELLKESDFISLHLPLTPETRHLINAAELALMKPGAILINTARGGLVD 238

Query: 129 ESELVSALLEDRLAAAVLDVFEHEP-QVPEELFGLENVVLLPHAASGTEETRKATADIVI 187
           E  L  AL   R+A A LDVFE EP      L  L NV+L PH  + T+E       +  
Sbjct: 239 EEALYEALKSGRIAGAALDVFEEEPPPADSPLLELPNVILTPHIGASTKEAVLRMGTMAA 298

Query: 188 ENL 190
           +N+
Sbjct: 299 QNV 301

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306

>gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

 Score =  142 bits (361), Expect = 8e-42
 Identities = 70/265 (26%), Positives = 104/265 (39%), Gaps = 69/265 (26%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
            AE++++ P L+++A    G+D IDL    E+GI VTN P   T+ VA+  +GL LA+ R
Sbjct: 51  TAEVLEAAPGLKVIARRGVGVDNIDLDAATERGILVTNVPGYSTESVAELTVGLILALAR 110

Query: 64  RFVRSED----------GEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFI---- 109
           R   ++           G +G +L     G+++G+IG G IG   A  A+A G  +    
Sbjct: 111 RIPEADASVRAGDWKKGGPIGLELY----GKTLGVIGGGGIGGIGAAIAKALGMGVVAYD 166

Query: 110 SYRSRAEKPNTKY----------------------------------------------- 122
            Y +                                                        
Sbjct: 167 PYPNPERAEEGGVEVLLLDLLLLDLKESDDLINLAPPTTMKTGHIIINEARGMLKDAVAI 226

Query: 123 ----KGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEET 178
                G +++E+ L + L E   AAA+  V E  P V   L  L NV+L PH A  TEE 
Sbjct: 227 NNARGGGVIEEAALDALLEEGIAAAALDVVEEEPPPVNSPLLDLPNVILTPHIAGATEEA 286

Query: 179 RKATADIVIENLEACFLNKPLLTPV 203
           ++  A+   ENL A          V
Sbjct: 287 QENMAEEAAENLLAFLKGGTPPNAV 311

This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 312

>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

 Score =  140 bits (355), Expect = 8e-41
 Identities = 76/248 (30%), Positives = 110/248 (44%), Gaps = 59/248 (23%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
             E++ + P L+ +    AG+D IDL    ++GI V N P      VA+  + L LA+ R
Sbjct: 57  TEEVLAAAPNLKAIGRAGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALAR 116

Query: 64  RFVRSEDGEMGYKLTTK------ISGRSVGIIGLGRIGMAVAKRAEAFGCFISY------ 111
           R   ++  +   +   K      ++G++VGIIGLGRIG AVAKR +AFG  +        
Sbjct: 117 RIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSP 176

Query: 112 RSRAEK-----------------------PNTKYK-----------------------GA 125
           R RA                         P T                          G 
Sbjct: 177 RERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGG 236

Query: 126 LVDESELVSALLEDRLAAAVLDVFEHEPQVPE-ELFGLENVVLLPHAASGTEETRKATAD 184
           +VDE  L++AL   ++A A LDVFE EP   +  L+ L NV+L PH    T+E ++  A+
Sbjct: 237 VVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQERVAE 296

Query: 185 IVIENLEA 192
           IV EN+  
Sbjct: 297 IVAENIVR 304

Length = 324

>gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains

 Score =  139 bits (354), Expect = 8e-41
 Identities = 71/248 (28%), Positives = 106/248 (42%), Gaps = 57/248 (22%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
             E+ID+   L+I+A    GLD ID+   K+KGI+V NTP   ++ VA+  IGL L++ R
Sbjct: 54  TKEVIDAAKNLKIIARAGVGLDNIDVEYAKKKGIKVINTPGASSNSVAELVIGLMLSLAR 113

Query: 64  ------RFVRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK 117
                 R ++            ++ G+++GIIG GRIG  VAK A A G  +       K
Sbjct: 114 FIHRANREMKLGKWNKKKYKGIELRGKTLGIIGFGRIGREVAKIARALGMNVIAYDPYPK 173

Query: 118 -------------------------------PNTKY--------------------KGAL 126
                                          P TK+                    +G +
Sbjct: 174 DEQAVELGVKTVSLEELLKNSDFISLHVPLTPETKHMINKKELELMKDGAIIINTSRGGV 233

Query: 127 VDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATADIV 186
           +DE  L+ AL   +LA A LDVFE+EP    +L  L NV L PH  + T+E ++   + +
Sbjct: 234 IDEEALLEALKSGKLAGAALDVFENEPPPGSKLLELPNVSLTPHIGASTKEAQERIGEEL 293

Query: 187 IENLEACF 194
              +    
Sbjct: 294 ANKIIEFL 301

Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301

>gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  135 bits (343), Expect = 4e-39
 Identities = 79/256 (30%), Positives = 112/256 (43%), Gaps = 60/256 (23%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
           DAEL+ + P+L ++     GLD +DL     +GI V N P    + VA+ A+ L LA+LR
Sbjct: 56  DAELLAAAPRLRLIQQPGVGLDGVDLEAATARGIPVANIPGGNAESVAEHAVMLMLALLR 115

Query: 64  RFVRS----EDGEMG---YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISY--RSR 114
           R   +      G  G    + + ++SG++VGI+GLG IG AVA+R   FG  + Y  R R
Sbjct: 116 RLPEADRELRAGRWGRPEGRPSRELSGKTVGIVGLGNIGRAVARRLRGFGVEVIYYDRFR 175

Query: 115 AEKPNTKYKGA---------------------------LVDESE---------------- 131
             +   K  G                            L+   E                
Sbjct: 176 DPEAEEKDLGVRYVELDELLAESDVVSLHVPLTPETRHLIGAEELAAMKPGAILINTARG 235

Query: 132 -------LVSALLEDRLAAAVLDVFEHEPQVPE-ELFGLENVVLLPHAASGTEETRKATA 183
                  L++AL    LA A LDVF  EP  P+  L  L+NV+L PH A  T+E+ +  A
Sbjct: 236 GLVDEEALLAALRSGHLAGAGLDVFWQEPLPPDDPLLRLDNVILTPHIAGVTDESYQRMA 295

Query: 184 DIVIENLEACFLNKPL 199
            IV EN+      +P 
Sbjct: 296 AIVAENIARLLRGEPP 311

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311

>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score =  131 bits (332), Expect = 2e-37
 Identities = 76/251 (30%), Positives = 117/251 (46%), Gaps = 57/251 (22%)

Query: 5   AELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR 64
            E+I++   L++++    G+D +DL  CKE+GI V+N     T+ VA+  IGL + +LR 
Sbjct: 61  GEVIEACKNLKMISVAFTGVDHVDLEACKERGITVSNAAGYSTEAVAELTIGLAIDLLRN 120

Query: 65  FVRSED-----GEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK-- 117
            V  +      G     +  +++G++VGI+G G IG+ VA+  +AFGC +   SR+EK  
Sbjct: 121 IVPCDAAVRAGGTKAGLIGRELAGKTVGIVGTGAIGLRVARLFKAFGCKVLAYSRSEKEE 180

Query: 118 ----------------------------PNTK--------------------YKGALVDE 129
                                         TK                     +G +VD 
Sbjct: 181 AKALGIEYVSLDELLAESDIVSLHLPLNDETKGLIGKEKLALMKESAILINTARGPVVDN 240

Query: 130 SELVSALLEDRLAAAVLDVFEHEPQVPEE--LFGLENVVLLPHAASGTEETRKATADIVI 187
             L  AL E ++A A +DVF+ EP +P +  L    N +L PH A  TEE  +  A+IV 
Sbjct: 241 EALADALNEGKIAGAGIDVFDMEPPLPADYPLLHAPNTILTPHVAFATEEAMEKRAEIVF 300

Query: 188 ENLEACFLNKP 198
           +N+EA    KP
Sbjct: 301 DNIEAWLAGKP 311

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315

>gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  129 bits (326), Expect = 1e-36
 Identities = 74/253 (29%), Positives = 105/253 (41%), Gaps = 67/253 (26%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
           DAE++  LP L+++   + G + +DL   KE+GI VTN P   TD VA     L LA+ R
Sbjct: 56  DAEVLAQLPNLKLIGVLATGYNNVDLAAAKERGITVTNVPGYSTDSVAQHTFALLLALAR 115

Query: 64  RFVRSED----GE---------MGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFG--CF 108
                 D    GE           Y +   ++G+++GIIG G IG AVA+ A AFG    
Sbjct: 116 LVAYHNDVVKAGEWQKSPDFCFWDYPIIE-LAGKTLGIIGYGNIGQAVARIARAFGMKVL 174

Query: 109 ISYRSRAEKPNTKY---------------------------------------------K 123
            + R  A      Y                                             +
Sbjct: 175 FAERKGAPPLREGYVSLDELLAQSDVISLHCPLTPETRNLINAEELAKMKPGAILINTAR 234

Query: 124 GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEE----LFGLENVVLLPHAASGTEETR 179
           G LVDE  L  AL   ++A A LDV   EP  P      L    N+++ PH A  + E R
Sbjct: 235 GGLVDEQALADALNSGKIAGAGLDVLSQEP--PRADNPLLKAAPNLIITPHIAWASREAR 292

Query: 180 KATADIVIENLEA 192
           +   DI+++N++A
Sbjct: 293 QRLMDILVDNIKA 305

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307

>gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  128 bits (325), Expect = 2e-36
 Identities = 72/245 (29%), Positives = 106/245 (43%), Gaps = 60/245 (24%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
            AE+I++ P+L+++     G+D ID+     +GI V N P   T  VA+  I L LA+ R
Sbjct: 53  TAEVIEAAPRLKVIGRAGVGVDNIDVEAATARGILVVNAPGANTISVAEHTIALMLALAR 112

Query: 64  RF------VRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGC-------FIS 110
                   +R+   +    +  ++ G+++GI+GLGRIG  VA+RA AFG        +IS
Sbjct: 113 NIPQADASLRAGKWDRKKFMGVELRGKTLGIVGLGRIGREVARRARAFGMKVLAYDPYIS 172

Query: 111 YRSRAEKPNTKYK---------------------------------------------GA 125
              RA     +                                               G 
Sbjct: 173 -AERAAAGGVELVSLDELLAEADFISLHTPLTPETRGLINAEELAKMKPGAILINTARGG 231

Query: 126 LVDESELVSALLEDRLAAAVLDVFEHEPQVPE-ELFGLENVVLLPHAASGTEETRKATAD 184
           +VDE+ L  AL   ++A A LDVFE EP   +  L GL NV+L PH  + TEE ++  A 
Sbjct: 232 IVDEAALADALKSGKIAGAALDVFEQEPPPADSPLLGLPNVILTPHLGASTEEAQERVAV 291

Query: 185 IVIEN 189
              E 
Sbjct: 292 DAAEQ 296

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

 Score =  126 bits (318), Expect = 2e-35
 Identities = 71/233 (30%), Positives = 101/233 (43%), Gaps = 59/233 (25%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
            AE+I++LP+L+++     G+D +D+    E+GI V N PD  T++VAD A+ L LA+ R
Sbjct: 56  TAEVIEALPRLKVIVRYGVGVDNVDVAAATERGIPVCNVPDYCTEEVADHALALILALAR 115

Query: 64  ------RFVRS-EDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116
                 R VR+            ++ G ++G++G GRIG AVAKRA+AFG  +       
Sbjct: 116 KLPFLDRAVRAGGWDWTVGGPIRRLRGLTLGLVGFGRIGRAVAKRAKAFGFRVIAYDPYV 175

Query: 117 KPNTKYKGA--------LVDESELVS------------------------ALL------- 137
                  G         L+  S++VS                        A L       
Sbjct: 176 PDGVAALGGVRVVSLDELLARSDVVSLHCPLTPETRHLIDAEALALMKPGAFLVNTARGG 235

Query: 138 ---EDRLAAAV---------LDVFEHEP-QVPEELFGLENVVLLPHAASGTEE 177
              E  LA A+         LDV E EP      L    NV+L PHAA  +EE
Sbjct: 236 LVDEAALARALKSGRIAGAALDVLEEEPPPADSPLLSAPNVILTPHAAWYSEE 288

The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312

>gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  126 bits (318), Expect = 2e-35
 Identities = 68/251 (27%), Positives = 103/251 (41%), Gaps = 64/251 (25%)

Query: 5   AELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR 64
            ++I++ PKL+++  C  G + +D+    E+GI V NTP    + VA+  +GL LA  R 
Sbjct: 59  KKVIEAAPKLKLIGVCRGGPENVDVEAATERGIPVLNTPGRNAEAVAEFTVGLMLAETRN 118

Query: 65  FVRS----------EDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISY--- 111
             R+          +D         ++ G++VGI+G G IG  VAKR +AFG  +     
Sbjct: 119 IARAHAALKDGEWRKDYYNYDGYGPELRGKTVGIVGFGAIGRRVAKRLKAFGAEVLVYDP 178

Query: 112 ---RSRAEKPNTKYK--------------------------------------------- 123
                + E    K                                               
Sbjct: 179 YVDPEKIEADGVKKVSLEELLKRSDVVSLHARLTPETRGMIGAEEFALMKPTAYFINTAR 238

Query: 124 GALVDESELVSALLEDRLAAAVLDVFEHEPQVPE--ELFGLENVVLLPHAASGTEETRKA 181
             LVDE  L+ AL E ++  A LDVF  EP +P    L  L+NV L PH A  T +  + 
Sbjct: 239 AGLVDEDALIEALEEGKIGGAALDVFPEEP-LPADHPLLKLDNVTLTPHIAGATRDVAER 297

Query: 182 TADIVIENLEA 192
           + +I+ E L+ 
Sbjct: 298 SPEIIAEELKR 308

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|240620 cd01619, LDH_like, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  118 bits (299), Expect = 2e-32
 Identities = 69/257 (26%), Positives = 101/257 (39%), Gaps = 70/257 (27%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
           DAEL+D  P L+ ++  + G D IDL   KE GI VTN P+   + VA+  I L LA+LR
Sbjct: 58  DAELLDKAPGLKFISLRATGYDNIDLDYAKELGIGVTNVPEYSPNAVAEHTIALILALLR 117

Query: 64  R--FVRSEDGEMGYKLTT----KISGRSVGIIGLGRIGMAVAKRAEAFGC---------- 107
              ++   D     +       ++  ++VG++G G+IG AVA+RA+ FG           
Sbjct: 118 NRKYIDERDKNQDLQDAGVIGRELEDQTVGVVGTGKIGRAVAQRAKGFGMKVIAYDPFRN 177

Query: 108 ---------------------FISYRSRAEKPNTKY-------------------KGALV 127
                                 IS        N                      +G+LV
Sbjct: 178 PELEDKGVKYVSLEELFKNSDIISLHVPLTPENHHMINEEAFKLMKKGVIIINTARGSLV 237

Query: 128 DESELVSALLEDRLAAAVLDVFEHEPQV--------------PEELFGLENVVLLPHAAS 173
           D   L+ AL   ++  A LDV E E                    L    NV++ PH A 
Sbjct: 238 DTEALIEALDSGKIFGAGLDVLEDETPDLLKDLEGEIFKDALNALLGRRPNVIITPHTAF 297

Query: 174 GTEETRKATADIVIENL 190
            T++  K   +I  EN+
Sbjct: 298 YTDDALKNMVEISCENI 314

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 323

>gnl|CDD|185307 PRK15409, PRK15409, bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

 Score =  116 bits (292), Expect = 2e-31
 Identities = 80/249 (32%), Positives = 114/249 (45%), Gaps = 62/249 (24%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
           DA L++ +PKL   +T S G D  D+     + I + +TP VLT+ VAD  + L L+  R
Sbjct: 57  DAALLEKMPKLRAASTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTAR 116

Query: 64  RFV----RSEDGEMGYKLT-----TKISGRSVGIIGLGRIGMAVAKRAE-AFGCFISYRS 113
           R V    R + GE    +      T +  +++GI+G+GRIGMA+A+RA   F   I Y +
Sbjct: 117 RVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNA 176

Query: 114 R------AEKPNTKY--------------------------------------------- 122
           R       E+ N +Y                                             
Sbjct: 177 RRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAG 236

Query: 123 KGALVDESELVSALLEDRLAAAVLDVFEHEP-QVPEELFGLENVVLLPHAASGTEETRKA 181
           +G +VDE+ L++AL +  + AA LDVFE EP  V   L  L NVV +PH  S T ETR  
Sbjct: 237 RGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYN 296

Query: 182 TADIVIENL 190
            A   ++NL
Sbjct: 297 MAACAVDNL 305

Length = 323

>gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional

 Score =  115 bits (291), Expect = 3e-30
 Identities = 71/236 (30%), Positives = 104/236 (44%), Gaps = 67/236 (28%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
            AE++++   L+++     G+D +D+     +GI V N P   T   A+  I L LA+ R
Sbjct: 55  TAEVLEAAKNLKVIGRAGVGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALAR 114

Query: 64  RFVRS----EDGE------MGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGC------ 107
              ++    + G+      MG +L     G+++GIIGLGRIG  VAKRA+AFG       
Sbjct: 115 NIPQAHASLKAGKWERKKFMGVELY----GKTLGIIGLGRIGSEVAKRAKAFGMKVIAYD 170

Query: 108 -FISYRSRAEK-------------------------PNTKY------------------- 122
            +IS   RA +                         P T+                    
Sbjct: 171 PYIS-PERAAQLGVELVSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINC 229

Query: 123 -KGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEE 177
            +G ++DE+ L  AL   ++A A LDVFE EP     LF L NVV+ PH  + T E
Sbjct: 230 ARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVVVTPHLGASTAE 285

Length = 526

>gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase

 Score =  115 bits (289), Expect = 5e-30
 Identities = 73/244 (29%), Positives = 108/244 (44%), Gaps = 60/244 (24%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
             E+I + PKL+++     G+D ID+     +GI V N P   T   A+ A+ + LA  R
Sbjct: 53  TEEVIAAAPKLKVIGRAGVGVDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAAR 112

Query: 64  RFVRSEDGEMGYK------LTTKISGRSVGIIGLGRIGMAVAKRAEAFGC-------FIS 110
              +++      +      + T++ G+++G+IGLGRIG  VAKRA+AFG        +IS
Sbjct: 113 NIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYIS 172

Query: 111 YRSRAEK-----------------------PNTK-----------------------YKG 124
              RAE+                       P T                         +G
Sbjct: 173 -PERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARG 231

Query: 125 ALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATAD 184
            ++DE+ L  AL E  + AA LDVFE EP     LF L+NV+  PH  + T E ++  A 
Sbjct: 232 GIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVIATPHLGASTREAQENVAT 291

Query: 185 IVIE 188
            V E
Sbjct: 292 QVAE 295

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525

>gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase

 Score =  110 bits (278), Expect = 2e-29
 Identities = 66/256 (25%), Positives = 98/256 (38%), Gaps = 69/256 (26%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
           DA+ +D+ P+L+I+A    G D  D+  C  +GI VT  PD+LT+  A+  IGL + + R
Sbjct: 57  DADFLDACPRLKIIACALKGYDNFDVEACTARGIWVTIVPDLLTEPTAELTIGLLIGLGR 116

Query: 64  ------RFVRSED--GEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA 115
                 RFVRS    G       T + G++VGI+G+G +G A+A+R   FG  + Y    
Sbjct: 117 HILAGDRFVRSGKFGGWRPKFYGTGLDGKTVGILGMGALGRAIARRLSGFGATLLYYDPH 176

Query: 116 EKPNTKYK---------------------------------------------------- 123
                + +                                                    
Sbjct: 177 PLDQAEEQALNLRRVELDELLESSDFLVLALPLTPDTLHLINAEALAKMKPGALLVNPCR 236

Query: 124 GALVDESELVSALLEDRLAAAVLDVFEHEP--------QVPEELFGLE-NVVLLPHAASG 174
           G++VDE+ +  AL    L     DVFE E          +P+EL       V  PH  S 
Sbjct: 237 GSVVDEAAVAEALKSGHLGGYAADVFEMEDWARPDRPRSIPQELLDQHDRTVFTPHIGSA 296

Query: 175 TEETRKATADIVIENL 190
            +E R         N+
Sbjct: 297 VDEVRLEIELEAALNI 312

Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score =  108 bits (273), Expect = 8e-29
 Identities = 62/261 (23%), Positives = 103/261 (39%), Gaps = 60/261 (22%)

Query: 2   GADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAV 61
               EL+ + P+L  + + SAG+D +   +  E+ + +TN   +    +A+  +G  LA 
Sbjct: 48  PPLPELLPAAPRLRWIQSTSAGVDALLFPELLERDVVLTNARGIFGPPIAEYVLGYMLAF 107

Query: 62  LRRFVRSEDGEM-----GYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFIS-YRSRA 115
            R+  R    +            +++G++V I+GLG IG  +A+RA+AFG  +   R   
Sbjct: 108 ARKLPRYARNQAERRWQRRGPVRELAGKTVLIVGLGDIGREIARRAKAFGMRVIGVRRSG 167

Query: 116 EK----------------------------PNTKYKGALVDESEL--------------- 132
                                         P T     L +                   
Sbjct: 168 RPAPPVVDEVYTPDELDELLPEADYVVNALPLTPETRGLFNAERFAAMKPGAVLINVGRG 227

Query: 133 --------VSALLEDRLAAAVLDVFEHEPQVPEE--LFGLENVVLLPHAASGTEETRKAT 182
                   + AL   R+A A LDVFE EP +P +  L+ L NV++ PH +  +    +  
Sbjct: 228 SVVDEDALIEALESGRIAGAALDVFEEEP-LPADSPLWDLPNVIITPHISGDSPSYPERV 286

Query: 183 ADIVIENLEACFLNKPLLTPV 203
            +I +ENL      +PLL  V
Sbjct: 287 VEIFLENLRRYLAGEPLLNVV 307

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|240663 cd12187, LDH_like_1, D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains

 Score =  105 bits (265), Expect = 1e-27
 Identities = 79/271 (29%), Positives = 115/271 (42%), Gaps = 86/271 (31%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
           DAE+++ LP+L+++AT S G D IDL  C+E+GI V N PD     VA+ A  L LA+ R
Sbjct: 54  DAEVLEKLPRLKLIATRSTGFDHIDLEACRERGIAVCNVPDYGEATVAEHAFALLLALSR 113

Query: 64  RFVRSED----------GEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFG----CF- 108
           +   + +          G  G++L    +G+++G++G GRIG  VA+ A  FG     + 
Sbjct: 114 KLREAIERTRRGDFSQAGLRGFEL----AGKTLGVVGTGRIGRRVARIARGFGMKVLAYD 169

Query: 109 ------------ISYRSRAE--------------KPNTKY-----------KGALV---- 127
                         Y S  E               P T +            GA++    
Sbjct: 170 VVPDEELAERLGFRYVSLEELLQESDIISLHVPYTPQTHHLINRENFALMKPGAVLINTA 229

Query: 128 -----DESELVSALLEDRLAAAVLDVFEHEPQVPEE---------------------LFG 161
                D   LV AL E +LA A LDV E E  + EE                     L  
Sbjct: 230 RGAVVDTEALVRALKEGKLAGAGLDVLEQEEVLREEAELFREDVSPEDLKKLLADHALLR 289

Query: 162 LENVVLLPHAASGTEETRKATADIVIENLEA 192
             NV++ PH A  T+E  +   D  +EN++A
Sbjct: 290 KPNVIITPHVAYNTKEALERILDTTVENIKA 320

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases

 Score =  104 bits (261), Expect = 5e-27
 Identities = 81/251 (32%), Positives = 109/251 (43%), Gaps = 64/251 (25%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
            A L++ LP L+++ T       IDL   KE+GI V  T        A+    L LA+ R
Sbjct: 60  PAALLERLPNLKLLVTTGMRNASIDLAAAKERGIVVCGTGGG-PTATAELTWALILALAR 118

Query: 64  RFVRSEDGEM--GYKLTT---KISGRSVGIIGLGRIGMAVAK------------------ 100
                ED  +  G   TT    ++G+++GI+GLGRIG  VA+                  
Sbjct: 119 NLPE-EDAALRAGGWQTTLGTGLAGKTLGIVGLGRIGARVARIGQAFGMRVIAWSSNLTA 177

Query: 101 -RAEAFG--------CFI------------SYRSR----AE-----KP-----NTKYKGA 125
            RA A G                       S R+R    AE     KP     NT  +G 
Sbjct: 178 ERAAAAGVEAAVSKEELFATSDVVSLHLVLSDRTRGLVGAEDLALMKPTALLVNTS-RGP 236

Query: 126 LVDESELVSALLEDRLAAAVLDVFEHEPQVPEE--LFGLENVVLLPHAASGTEETRKATA 183
           LVDE  L++AL   R+A A LDVF+ EP +P +  L GL NV+L PH    TEE  +   
Sbjct: 237 LVDEGALLAALRAGRIAGAALDVFDVEP-LPADHPLRGLPNVLLTPHIGYVTEEAYEGFY 295

Query: 184 DIVIENLEACF 194
              +EN+ A  
Sbjct: 296 GQAVENIAAWL 306

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308

>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

 Score = 99.1 bits (248), Expect = 2e-26
 Identities = 57/175 (32%), Positives = 76/175 (43%), Gaps = 57/175 (32%)

Query: 55  IGLTLAVLRRF------VRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCF 108
           + L LA+ RR       VR+        L  ++SG++VGIIGLGRIG AVA+R +AFG  
Sbjct: 1   LALLLALARRIPEADRQVRAGRWRPDALLGRELSGKTVGIIGLGRIGRAVARRLKAFGMK 60

Query: 109 ISY--RSRAEK----------------------------PNTKY---------------- 122
           +    R    +                            P T++                
Sbjct: 61  VIAYDRYPKAEAEALGARYVSLDELLAESDVVSLHLPLTPETRHLINAERLALMKPGAIL 120

Query: 123 ----KGALVDESELVSALLEDRLAAAVLDVFEHEPQVPE-ELFGLENVVLLPHAA 172
               +G LVDE  L++AL   R+A A LDVFE EP  P+  L  L NV+L PH A
Sbjct: 121 INTARGGLVDEDALIAALKSGRIAGAALDVFEPEPLPPDHPLLELPNVILTPHIA 175

This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175

>gnl|CDD|181414 PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; Provisional

 Score = 99.3 bits (248), Expect = 4e-25
 Identities = 72/263 (27%), Positives = 106/263 (40%), Gaps = 76/263 (28%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
           D E++  LP L+++   + G + +D+   K+KGI V N     T+ VA     + L++L 
Sbjct: 54  DKEVLSQLPNLKLICITATGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLG 113

Query: 64  R------FVRSE-----------DGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFG 106
           R      +V+S               +G     +I G+  GIIGLG IG  VAK A+AFG
Sbjct: 114 RINYYDRYVKSGEYSESPIFTHISRPLG-----EIKGKKWGIIGLGTIGKRVAKIAQAFG 168

Query: 107 CFISYRSRAEK----------------------------PNTK----YK----------- 123
             + Y S + K                              TK    YK           
Sbjct: 169 AKVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAIL 228

Query: 124 -----GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELF----GLENVVLLPHAASG 174
                G +V+E +L  AL E  + A  LDV E EP             E +++ PH A  
Sbjct: 229 INVGRGGIVNEKDLAKALDEKDIYAG-LDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWA 287

Query: 175 TEETRKATADIVIENLEACFLNK 197
           ++E RK   + V EN++  FL  
Sbjct: 288 SKEARKTLIEKVKENIKD-FLEG 309

Length = 311

>gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 98.9 bits (247), Expect = 5e-25
 Identities = 69/256 (26%), Positives = 100/256 (39%), Gaps = 61/256 (23%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPD-VLTDDVADAAIGLTLAVL 62
           D E  +    L+++A    G D +DL    E G+ VT  P  V  D VA+ A+ L L VL
Sbjct: 60  DKEFFEYNDGLKLIARHGIGYDNVDLKAATEHGVIVTRVPGAVERDAVAEHAVALILTVL 119

Query: 63  RRFVRSEDGEMGYKLTTK-------ISGRSVGIIGLGRIGMAVAKRA-EAFGCFI----S 110
           R+  ++ +     K T +       +SG++VGIIG G IG  VA+   E F   +     
Sbjct: 120 RKINQASEAVKEGKWTERANFVGHELSGKTVGIIGYGNIGSRVAEILKEGFNAKVLAYDP 179

Query: 111 YRSRAEKPNTKYK----------------------------------------------- 123
           Y S         K                                               
Sbjct: 180 YVSEEVIKKKGAKPVSLEELLAESDIISLHAPLTEETYHMINEKAFSKMKKGVILVNTAR 239

Query: 124 GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEE-LFGLENVVLLPHAASGTEETRKAT 182
           G L+DE  L+ AL   ++A A LDV E EP   +  L   ENVV+ PH  + T E+    
Sbjct: 240 GELIDEEALIEALKSGKIAGAGLDVLEEEPIKADHPLLHYENVVITPHIGAYTYESLYGM 299

Query: 183 ADIVIENLEACFLNKP 198
            + V++++E     K 
Sbjct: 300 GEKVVDDIEDFLAGKE 315

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321

>gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 95.8 bits (239), Expect = 6e-24
 Identities = 66/264 (25%), Positives = 104/264 (39%), Gaps = 71/264 (26%)

Query: 5   AELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR 64
            E + +L +L+++   SAG+D + L +  E G+ V N     +  VA+ A+ L LA+ +R
Sbjct: 52  EEALAALKRLKLIQVPSAGVDHLPLERLPE-GVVVANNHG-NSPAVAEHALALILALAKR 109

Query: 65  FVRSEDGEMGY----------KLTTKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRS 113
            V   D ++              + ++ G++VGI+G G IG  +A+  +AFG   I    
Sbjct: 110 IVEY-DNDLRRGIWHGRAGEEPESKELRGKTVGILGYGHIGREIARLLKAFGMRVIGVSR 168

Query: 114 RAEK---------------------------PNTKY-----------------------K 123
             ++                           P TK                        +
Sbjct: 169 SPKEDEGADFVGTLSDLDEALEQADVVVVALPLTKQTRGLIGAAELAAMKPGAILVNVGR 228

Query: 124 GALVDESELVSALLEDRLAAAVLDVFEHEP-------QVPEELFGLENVVLLPHAASGTE 176
           G +VDE  L  AL E  +A A +DV+   P               L NV++ PH A  TE
Sbjct: 229 GPVVDEEALYEALKERPIAGAAIDVWWRYPSRGDPVAPSRYPFHELPNVIMSPHNAGWTE 288

Query: 177 ETRKATADIVIENLEACFLNKPLL 200
           ET +   D   EN+      +PLL
Sbjct: 289 ETFRRRIDEAAENIRRYLRGEPLL 312

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240656 cd12179, 2-Hacid_dh_14, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 95.1 bits (237), Expect = 1e-23
 Identities = 69/257 (26%), Positives = 109/257 (42%), Gaps = 72/257 (28%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
           D E I+    L+ +A   AGL+ IDL   KEKGI++ N P+   D V + A+G+ LA+  
Sbjct: 53  DKEFIEKATNLKFIARAGAGLENIDLEYAKEKGIELFNAPEGNRDAVGEHALGMLLALFN 112

Query: 64  RFVRSE----------DGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFI---- 109
           +  R++          +G  G +L     G++VGIIG G +G A AKR   FGC +    
Sbjct: 113 KLNRADQEVRNGIWDREGNRGVEL----MGKTVGIIGYGNMGKAFAKRLSGFGCKVIAYD 168

Query: 110 SYRSRAEK---------------------PNTKYKGALVDESE----------------- 131
            Y++  +                      P T     +V++                   
Sbjct: 169 KYKNFGDAYAEQVSLETLFKEADILSLHIPLTPETRGMVNKEFISSFKKPFYFINTARGK 228

Query: 132 ------LVSALLEDRLAAAVLDVFEHE----------PQVPEELFGLENVVLLPHAASGT 175
                 LV AL   ++  A LDV E+E          P+  E L     V+L PH A  T
Sbjct: 229 VVVTKDLVKALKSGKILGACLDVLEYEKASFESIFNQPEAFEYLIKSPKVILTPHIAGWT 288

Query: 176 EETRKATADIVIENLEA 192
            E+ +  A+++++ ++A
Sbjct: 289 FESYEKIAEVLVDKIKA 305

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|240659 cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score = 92.5 bits (231), Expect = 1e-22
 Identities = 71/277 (25%), Positives = 105/277 (37%), Gaps = 88/277 (31%)

Query: 3   ADAELIDSLPKLEI--VATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLA 60
            DA +++ L +L +  +A   AG + +DL   KE GI V   P      VA+ A+ L LA
Sbjct: 56  LDAPVLEKLAELGVKLIALRCAGFNNVDLKAAKELGITVVRVPAYSPYAVAEHAVALLLA 115

Query: 61  VLRRFVR----------SEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGC--- 107
           + R+  R          S DG +G+ L     G++VG+IG G+IG A A+  + FGC   
Sbjct: 116 LNRKIHRAYNRVREGNFSLDGLLGFDL----HGKTVGVIGTGKIGQAFARILKGFGCRVL 171

Query: 108 -------------FISYRSRAE--------------KPNTKY------------------ 122
                         + Y    E               P T +                  
Sbjct: 172 AYDPYPNPELAKLGVEYVDLDELLAESDIISLHCPLTPETHHLINAETIAKMKDGVMLIN 231

Query: 123 --KGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELF------------------GL 162
             +G L+D   L+ AL   ++    LDV+E E      LF                    
Sbjct: 232 TSRGGLIDTKALIEALKSGKIGGLGLDVYEEE----AGLFFEDHSDEIIQDDVLARLLSF 287

Query: 163 ENVVLLPHAASGTEETRKATADIVIENLEACFLNKPL 199
            NV++  H A  T+E     A+  +ENL+     KPL
Sbjct: 288 PNVLITGHQAFFTKEALTNIAETTLENLDDFEAGKPL 324

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 328

>gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score = 90.7 bits (226), Expect = 4e-22
 Identities = 65/260 (25%), Positives = 99/260 (38%), Gaps = 76/260 (29%)

Query: 3   ADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVL 62
                +D  P L+ +A   AG++ ID+    ++GI V NTP    + VA+  I + LA+ 
Sbjct: 40  DKLHDMDFAPSLKAIARAGAGVNNIDVDAASKRGIVVFNTPGANANAVAELVIAMMLALS 99

Query: 63  RRFVR-------------SEDGEMGYK--LTTKISGRSVGIIGLGRIGMAVAKRAEAFGC 107
           R  ++             S+  E G K  + T++ G+++G+IGLG IG  VA  A A G 
Sbjct: 100 RNIIQAIKWVTNGDGDDISKGVEKGKKQFVGTELRGKTLGVIGLGNIGRLVANAALALGM 159

Query: 108 -------FISYRSRAEK----------------------------PNTKY---------- 122
                  ++S    A K                              T+           
Sbjct: 160 KVIGYDPYLS-VEAAWKLSVEVQRVTSLEELLATADYITLHVPLTDETRGLINAELLAKM 218

Query: 123 ----------KGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAA 172
                     +G +VDE  L+ AL E +L   V D  E     P  L  L NV+  PH  
Sbjct: 219 KPGAILLNFARGEIVDEEALLEALDEGKLGGYVTDFPE-----PALLGHLPNVIATPHLG 273

Query: 173 SGTEETRKATADIVIENLEA 192
           + TEE  +  A +    +  
Sbjct: 274 ASTEEAEENCAVMAARQIMD 293

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305

>gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains

 Score = 84.6 bits (210), Expect = 1e-19
 Identities = 71/266 (26%), Positives = 103/266 (38%), Gaps = 83/266 (31%)

Query: 4   DAELIDSLPKLEI--VATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAV 61
            AEL++ L +  +  ++T S G D IDL   KE GI+V+N      + VAD  + L L  
Sbjct: 57  SAELLEKLKEAGVKYISTRSIGYDHIDLDAAKELGIKVSNVT-YSPNSVADYTVMLMLMA 115

Query: 62  LRRF----VRSE------DGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFI-- 109
           LR++     R+E       G  G +L       +VG+IG GRIG AV K    FGC I  
Sbjct: 116 LRKYKQIMKRAEVNDYSLGGLQGRELRNL----TVGVIGTGRIGQAVIKNLSGFGCKILA 171

Query: 110 --SYRSRAEKPNTKY--------------------------------------------- 122
              Y +   K   +Y                                             
Sbjct: 172 YDPYPNEEVKKYAEYVDLDTLYKESDIITLHTPLTEETYHLINKESIAKMKDGVIIINTA 231

Query: 123 KGALVDESELVSALLEDRLAAAVLDVFEHEPQV------------PE--ELFGLENVVLL 168
           +G L+D   L+  L   ++  A LDV E E  +             E   L    NV+L 
Sbjct: 232 RGELIDTEALIEGLESGKIGGAALDVIEGEDGIYYNDRKGDILSNRELAILRSFPNVILT 291

Query: 169 PHAASGTEETRKATADIVIENLEACF 194
           PH A  T++   A +D+V  ++E+  
Sbjct: 292 PHMAFYTDQ---AVSDMVENSIESLV 314

This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 322

>gnl|CDD|240653 cd12176, PGDH_3, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score = 83.0 bits (206), Expect = 3e-19
 Identities = 70/245 (28%), Positives = 99/245 (40%), Gaps = 63/245 (25%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
             E++++ PKL  +     G +++DL    ++GI V N P   T  VA+  IG  + + R
Sbjct: 55  TEEVLEAAPKLLAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIIMLAR 114

Query: 64  R-FVRSEDGEMG--YKLTTK---ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK 117
           R   R+     G   K  T    + G+++GIIG G IG  ++  AEA G  + +   AEK
Sbjct: 115 RLPDRNAAAHRGIWNKSATGSHEVRGKTLGIIGYGHIGSQLSVLAEALGMRVIFYDIAEK 174

Query: 118 -----------------------------PNTK--------------------YKGALVD 128
                                        P+TK                     +G +VD
Sbjct: 175 LPLGNARQVSSLEELLAEADFVTLHVPATPSTKNMIGAEEIAQMKKGAILINASRGTVVD 234

Query: 129 ESELVSALLEDRLAAAVLDVFEHEPQVPEELF-----GLENVVLLPHAASGTEETRKATA 183
              L  AL    LA A +DVF  EP    E F     GL NV+L PH    TEE   A  
Sbjct: 235 IDALAEALRSGHLAGAAVDVFPEEPASNGEPFSSPLQGLPNVILTPHIGGSTEE---AQE 291

Query: 184 DIVIE 188
           +I +E
Sbjct: 292 NIGLE 296

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|180588 PRK06487, PRK06487, glycerate dehydrogenase; Provisional

 Score = 80.1 bits (198), Expect = 5e-18
 Identities = 68/258 (26%), Positives = 103/258 (39%), Gaps = 63/258 (24%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
           DA  + + P+L+++   + G + +DL   +E+GI V N     T  VA   + L LA+  
Sbjct: 57  DAAALAAAPQLKLILVAATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALAT 116

Query: 64  RFVRSE----DGEMGYKL--------TTKISGRSVGIIGLGRIGMAVAKRAEAFG----- 106
           R    +     G                ++ G+++G++G G +G AVA+ AEAFG     
Sbjct: 117 RLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVLI 176

Query: 107 ----------------------------CFISYRSR---------AEKP-----NTKYKG 124
                                       C ++  +R           KP     NT  +G
Sbjct: 177 GQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTA-RG 235

Query: 125 ALVDESELVSALLEDRLAAAVLDVFEHEPQV---PEELFGLENVVLLPHAASGTEETRKA 181
            LVDE  L  AL    L  A  DV   EP V   P     +  +++ PH+A G+ E R+ 
Sbjct: 236 GLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQR 295

Query: 182 TADIVIENLEACFLNKPL 199
               + EN  A F  KPL
Sbjct: 296 IVGQLAENARAFFAGKPL 313

Length = 317

>gnl|CDD|240641 cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score = 77.9 bits (193), Expect = 2e-17
 Identities = 63/267 (23%), Positives = 98/267 (36%), Gaps = 86/267 (32%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDV---------LTDDVADAA 54
              L+  LP L+ + +  AG+D +             + PDV         L   +A+  
Sbjct: 49  PPGLLARLPNLKAIFSLGAGVDHLLADP---------DLPDVPIVRLVDPGLAQGMAEYV 99

Query: 55  IGLTLAVLRRFVR----SEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFIS 110
           +   L + R   R       G          + R VG++GLG +G AVA+R  A G    
Sbjct: 100 LAAVLRLHRDMDRYAAQQRRGVWKPLPQRPAAERRVGVLGLGELGAAVARRLAALG---- 155

Query: 111 YR----SRAEK-------------------------------PNTKY-----------KG 124
           +     SR+ K                               P T+            +G
Sbjct: 156 FPVSGWSRSPKDIEGVTCFHGEEGLDAFLAQTDILVCLLPLTPETRGILNAELLARLPRG 215

Query: 125 A---------LVDESELVSALLEDRLAAAVLDVFEHEPQVPEE--LFGLENVVLLPHAAS 173
           A          + E++L++AL    L+ AVLDVFE EP +P +  L+    V + PH A+
Sbjct: 216 AALINVGRGPHLVEADLLAALDSGHLSGAVLDVFEQEP-LPADHPLWRHPRVTVTPHIAA 274

Query: 174 GTEETRKATADIVIENLEACFLNKPLL 200
            T+    + A  V EN+      +PL 
Sbjct: 275 ITD--PDSAAAQVAENIRRLEAGEPLP 299

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|240636 cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 74.6 bits (184), Expect = 3e-16
 Identities = 64/257 (24%), Positives = 95/257 (36%), Gaps = 60/257 (23%)

Query: 6   ELIDSLPKLEIVATCSAGLDK-IDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR 64
           E + + P +  V    AG++  ++     + G + TN      + VA+ A+ L LA LR+
Sbjct: 42  ERLPASPGVRWVQLPFAGVEAFVEAGVITDPGRRWTNAAGAYAETVAEHALALLLAGLRQ 101

Query: 65  FVR-----SEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAEK- 117
                   + D      L T + G +V I+G G IG A+      FG   I+        
Sbjct: 102 LPARARATTWDPAEEDDLVTLLRGSTVAIVGAGGIGRALIPLLAPFGAKVIAVNRSGRPV 161

Query: 118 --------------------------PNTKYKGALVDESE-------------------- 131
                                     P T     LVD +                     
Sbjct: 162 EGADETVPADRLDEVWPDADHVVLAAPLTPETRHLVDAAALAAMKPHAWLVNVARGPLVD 221

Query: 132 ---LVSALLEDRLAAAVLDVFEHEPQVPEE--LFGLENVVLLPHAASGTEETRKATADIV 186
              LV AL    +A A LDV + EP +P+   L+ L N ++ PH A+  E  R   A+ V
Sbjct: 222 TDALVDALRSGEIAGAALDVTDPEP-LPDGHPLWSLPNALITPHVANTPEVIRPLLAERV 280

Query: 187 IENLEACFLNKPLLTPV 203
            EN+ A    +PLL  V
Sbjct: 281 AENVRAFAAGEPLLGVV 297

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 303

>gnl|CDD|240662 cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains

 Score = 71.8 bits (177), Expect = 5e-15
 Identities = 70/267 (26%), Positives = 102/267 (38%), Gaps = 84/267 (31%)

Query: 4   DAELIDSLPKLEI--VATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAV 61
           D E+ + L +  I  +A  SAG+D IDL   KE G+++TN P      +A+ A+   L +
Sbjct: 57  DEEVYEKLAEYGIKQIALRSAGVDMIDLDLAKENGLKITNVPAYSPRAIAEFAVTQALNL 116

Query: 62  LRRF------VRSEDGEMGYKLTTKISGR-----SVGIIGLGRIGMAVAKRAEAFGCF-- 108
           LR        V   D    ++    + GR     +VGIIG GRIG A AK  + FG    
Sbjct: 117 LRNTPEIDRRVAKGD----FRWAPGLIGREIRDLTVGIIGTGRIGSAAAKIFKGFGAKVI 172

Query: 109 ---ISYRSRAEKPNTKY------------------------------------KGA---- 125
                     EK    Y                                     GA    
Sbjct: 173 AYDPYPNPELEKFLLYYDSLEDLLKQADIISLHVPLTKENHHLINAEAFAKMKDGAILVN 232

Query: 126 -----LVDESELVSALLEDRLAAAVLDVFEHE--------------PQVPEELFGLENVV 166
                LVD   L+ AL   ++A A LD +E+E               +V +EL  + NV+
Sbjct: 233 AARGGLVDTKALIDALDSGKIAGAALDTYENETGYFNKDWSGKEIEDEVLKELIAMPNVL 292

Query: 167 LLPHAASGTEETRKATADIVIENLEAC 193
           + PH A  T+    A  ++V  +L+  
Sbjct: 293 ITPHIAFYTDT---AVKNMVEISLDDA 316

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|181499 PRK08605, PRK08605, D-lactate dehydrogenase; Validated

 Score = 70.2 bits (172), Expect = 2e-14
 Identities = 61/249 (24%), Positives = 101/249 (40%), Gaps = 75/249 (30%)

Query: 17  VATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRF--VRSEDGEMG 74
           +A  SAG D  DL    +  + ++N P    + +A+  +   + ++R F  ++++  E  
Sbjct: 73  IAQRSAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHD 132

Query: 75  YKLTTKISGRS-----VGIIGLGRIGMAVAK-RAEAFGC---------------FISYRS 113
           ++    I  RS     V +IG GRIG+AVAK  A+ +G                ++ Y+ 
Sbjct: 133 FRWEPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAATYVDYKD 192

Query: 114 RAEK------------PNTKY-----------------------KGALVDESELVSALLE 138
             E+            P TKY                       +G+LVD   L+ AL  
Sbjct: 193 TIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDN 252

Query: 139 DRLAAAVLDVFEHE-PQVP-------------EELFGLENVVLLPHAASGTEETRKATAD 184
             +  A LD +E E P  P             E L   E+V+L PH A  T+    A  +
Sbjct: 253 GLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTPHIAFYTDA---AVKN 309

Query: 185 IVIENLEAC 193
           ++++ L+A 
Sbjct: 310 LIVDALDAT 318

Length = 332

>gnl|CDD|177941 PLN02306, PLN02306, hydroxypyruvate reductase

 Score = 70.3 bits (172), Expect = 2e-14
 Identities = 64/249 (25%), Positives = 102/249 (40%), Gaps = 81/249 (32%)

Query: 21  SAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRSEDGEMG--YK-- 76
           + G + +D+    + GI V NTP VLT+  A+ A  L+LA  RR V +++      Y+  
Sbjct: 94  AVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGW 153

Query: 77  -----LTTKISGRSVGIIGLGRIG-----MAV--------------AKRAE----AFGCF 108
                +   + G++VG+IG GRIG     M V              + R E    A+G F
Sbjct: 154 LPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQF 213

Query: 109 ISYRSRAEKP--------------------------NTKY-------------------- 122
           +  ++  E+P                           T Y                    
Sbjct: 214 L--KANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNA 271

Query: 123 -KGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKA 181
            +G ++DE  LV  L  + +    LDVFE EP +   L  ++N V++PH AS ++ TR+ 
Sbjct: 272 SRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPGLADMKNAVVVPHIASASKWTREG 331

Query: 182 TADIVIENL 190
            A +   N+
Sbjct: 332 MATLAALNV 340

Length = 386

>gnl|CDD|235890 PRK06932, PRK06932, glycerate dehydrogenase; Provisional

 Score = 69.8 bits (171), Expect = 2e-14
 Identities = 64/255 (25%), Positives = 100/255 (39%), Gaps = 70/255 (27%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAV-- 61
             E +  LPKL+++A  + G + +DLV  KE GI V N     +  V +  +G+  A+  
Sbjct: 56  TRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALKH 115

Query: 62  -LRRFVR-------SEDGEMGY--KLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISY 111
            L  + R       +   +  Y     T + G ++G+ G G +G  V + A+A G  + Y
Sbjct: 116 SLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLY 175

Query: 112 RSR--------------------------------------AE-----KP-----NTKYK 123
                                                    AE     KP     NT  +
Sbjct: 176 AEHKGASVCREGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTG-R 234

Query: 124 GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEE-------LFGLENVVLLPHAASGTE 176
           G LVDE  L+ AL   ++A A LDV   EP  PE+          L N+++ PH A  ++
Sbjct: 235 GPLVDEQALLDALENGKIAGAALDVLVKEP--PEKDNPLIQAAKRLPNLLITPHIAWASD 292

Query: 177 ETRKATADIVIENLE 191
                  + V +N+E
Sbjct: 293 SAVTTLVNKVAQNIE 307

Length = 314

>gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains

 Score = 69.9 bits (172), Expect = 3e-14
 Identities = 59/225 (26%), Positives = 92/225 (40%), Gaps = 74/225 (32%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVAD---AAIGLTLA 60
           +  L++   K++ V T + G D ID    KE+GI   N P    + VA+   +A+ L LA
Sbjct: 49  NEALLE-GSKVKFVGTATIGTDHIDTDYLKERGIGFANAPGCNANSVAEYVLSAL-LVLA 106

Query: 61  VLRRFVRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISY---RSRAE 116
             + F               + G++VGI+G+G +G  +A+R EA G   +     R+ AE
Sbjct: 107 QRQGF--------------SLKGKTVGIVGVGNVGSRLARRLEALGMNVLLCDPPRAEAE 152

Query: 117 K---------------------PNTK---YK-GALVDESELVS----------------- 134
                                 P T+   +    L+DE  L +                 
Sbjct: 153 GDPGFVSLEELLAEADIITLHVPLTRDGEHPTYHLLDEDFLAALKPGQILINASRGAVID 212

Query: 135 --ALLE----DRLAAAVLDVFEHEPQVPEELFGLENVVLL-PHAA 172
             ALL      +    VLDV+E+EP++  EL  L+ V +  PH A
Sbjct: 213 NQALLALLQRGKDLRVVLDVWENEPEIDLEL--LDKVDIATPHIA 255

D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 343

>gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family

 Score = 68.0 bits (167), Expect = 9e-14
 Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 3/83 (3%)

Query: 124 GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEE--LFGLENVVLLPHAASGTEETRKA 181
           G  VDE  L+ AL   ++  A LDVFE EP +P++  L+ L+NV++ PH +  +E   + 
Sbjct: 227 GPSVDEDALIEALKNKQIRGAALDVFEEEP-LPKDSPLWDLDNVLITPHISGVSEHFNER 285

Query: 182 TADIVIENLEACFLNKPLLTPVV 204
             DI  ENL++   +  LL  VV
Sbjct: 286 LFDIFYENLKSFLEDGELLKNVV 308

Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240643 cd12166, 2-Hacid_dh_7, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 67.6 bits (166), Expect = 1e-13
 Identities = 63/230 (27%), Positives = 93/230 (40%), Gaps = 60/230 (26%)

Query: 1   VGADAELIDSLPKLEIVATCSAGLDKI-DLVKCKEKGIQVTNTPDVLTDDVADAAIGLTL 59
                E + +LP+L +V T SAG D +  L+    +G+ + N   V     A+ A+ L L
Sbjct: 48  APPVLEALRALPRLRVVQTLSAGYDGVLPLLP---EGVTLCNARGVHDASTAELAVALIL 104

Query: 60  AVLR---RFVRSED-GEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA 115
           A LR   RFVR++  G    + T  ++ R V I+G G IG A+ +R   F   ++  +R 
Sbjct: 105 ASLRGLPRFVRAQARGRWEPRRTPSLADRRVLIVGYGSIGRAIERRLAPFEVRVTRVART 164

Query: 116 EKPN----------------------------TKY-----------KGAL---------V 127
            +P                             T+             GAL         V
Sbjct: 165 ARPGEQVHGIDELPALLPEADVVVLIVPLTDETRGLVDAEFLARMPDGALLVNVARGPVV 224

Query: 128 DESELVSALLEDRLAAAVLDVFEHEPQVPEE--LFGLENVVLLPHAASGT 175
           D   LV+ L   RL AA LDV + EP +P    L+    V++ PH    T
Sbjct: 225 DTDALVAELASGRLRAA-LDVTDPEP-LPPGHPLWSAPGVLITPHVGGAT 272

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 300

>gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 66.4 bits (163), Expect = 4e-13
 Identities = 35/81 (43%), Positives = 46/81 (56%), Gaps = 2/81 (2%)

Query: 124 GALVDESELVSALLEDRLAAAVLDVFEHEPQVPE-ELFGLENVVLLPHAASGTEETRKAT 182
           GALVDE+ L++ L   RL AA LDV + EP  P+  L  L NV+L PH A  T + R+  
Sbjct: 242 GALVDEAALLAELRSGRLRAA-LDVTDPEPLPPDSPLRTLPNVLLTPHIAGSTGDERRRL 300

Query: 183 ADIVIENLEACFLNKPLLTPV 203
            D  ++ LE     +PLL  V
Sbjct: 301 GDYALDELERFLAGEPLLHEV 321

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 330

>gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family

 Score = 65.7 bits (161), Expect = 6e-13
 Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 5/106 (4%)

Query: 7   LIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFV 66
            +  +  L+ +   SAG+D + L   K+KGI +TN   + +  +A+  +G  L + +   
Sbjct: 54  DLAKMKNLKWIQLYSAGVDYLPLEYIKKKGILLTNNSGIHSIPIAEWIVGYILEIYKGLK 113

Query: 67  RS--EDGEMGYKLTTK---ISGRSVGIIGLGRIGMAVAKRAEAFGC 107
           ++     E  +K+ +    + G+++  +G G IG  +AKR +AFG 
Sbjct: 114 KAYKNQKEKKWKMDSSLLELYGKTILFLGTGSIGQEIAKRLKAFGM 159

Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein

 Score = 64.7 bits (158), Expect = 2e-12
 Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 9/139 (6%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLT---DDVADAAIGLTLA 60
           DA++I    +++++     GL+ +D+    + GI+V   P   T      A+ AI L L 
Sbjct: 73  DADIIARASQMKLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLG 132

Query: 61  VLRR----FVRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISY--RSR 114
           +LR+     +  +   +G  +   + G++V I+G G IG+ +AKR   FG  +    RS 
Sbjct: 133 LLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSW 192

Query: 115 AEKPNTKYKGALVDESELV 133
             +P         D  +LV
Sbjct: 193 TSEPEDGLLIPNGDVDDLV 211

Length = 347

>gnl|CDD|236985 PRK11790, PRK11790, D-3-phosphoglycerate dehydrogenase; Provisional

 Score = 63.7 bits (156), Expect = 4e-12
 Identities = 62/244 (25%), Positives = 98/244 (40%), Gaps = 63/244 (25%)

Query: 5   AELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR 64
            E++ +  KL  +     G +++DL    ++GI V N P   T  VA+  IG  + +LR 
Sbjct: 67  EEVLAAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRG 126

Query: 65  -FVRSEDGEMGY--KLTT---KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK- 117
              ++     G   K      ++ G+++GI+G G IG  ++  AE+ G  + +    +K 
Sbjct: 127 IPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKL 186

Query: 118 ----------------------------PNTKY-----------KGAL---------VDE 129
                                       P+TK             GA+         VD 
Sbjct: 187 PLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDI 246

Query: 130 SELVSALLEDRLAAAVLDVFEHEPQVPEELF-----GLENVVLLPHAASGTEETRKATAD 184
             L  AL    LA A +DVF  EP+   + F     GL+NV+L PH    T+E   A  +
Sbjct: 247 DALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQE---AQEN 303

Query: 185 IVIE 188
           I +E
Sbjct: 304 IGLE 307

Length = 409

>gnl|CDD|166874 PRK00257, PRK00257, erythronate-4-phosphate dehydrogenase; Validated

 Score = 62.7 bits (153), Expect = 8e-12
 Identities = 52/215 (24%), Positives = 75/215 (34%), Gaps = 71/215 (33%)

Query: 13  KLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIG--LTLAVLRRFVRSED 70
           ++  V TC+ G D +DL    E GI  ++ P      V D  +G  LTLA          
Sbjct: 58  RVRFVGTCTIGTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAEREGV----- 112

Query: 71  GEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAF-----------------GCFISYRS 113
                     ++ R+ G++G G +G  + +                      G F+S   
Sbjct: 113 ---------DLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAEGDGDFVSLER 163

Query: 114 RAEK--------PNTKY---------------------------KGALVDESELVSALLE 138
             E+        P TK                            +GA+VD   L  ALL 
Sbjct: 164 ILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLS 223

Query: 139 DRLAAAVLDVFEHEPQVPEELFGLENVVL-LPHAA 172
                AVLDV+E EPQ+  EL   +   +  PH A
Sbjct: 224 GEDLDAVLDVWEGEPQIDLEL--ADLCTIATPHIA 256

Length = 381

>gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 58.7 bits (143), Expect = 2e-10
 Identities = 51/167 (30%), Positives = 70/167 (41%), Gaps = 25/167 (14%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
           DAEL+   P+L  V   +  +  +      E+GI VT+  D   + VA+  +   L  LR
Sbjct: 63  DAELLARAPRLRAVVHAAGSVRGLVTDAVWERGILVTSAADANAEPVAEFTLAAILLALR 122

Query: 64  R------FVRSEDGEMGYKL--TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFIS----Y 111
           R        R+              + GR+VGI+G GRIG AV +    FG  +     Y
Sbjct: 123 RIPRFAAAYRAGRDWGWPTRRGGRGLYGRTVGIVGFGRIGRAVVELLRPFGLRVLVYDPY 182

Query: 112 RSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLD-VFEHEPQVPE 157
              AE       G      ELVS  L++ LA +  D V  H P  PE
Sbjct: 183 LPAAE---AAALGV-----ELVS--LDELLARS--DVVSLHAPLTPE 217

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 330

>gnl|CDD|235800 PRK06436, PRK06436, glycerate dehydrogenase; Provisional

 Score = 58.7 bits (142), Expect = 2e-10
 Identities = 59/253 (23%), Positives = 100/253 (39%), Gaps = 60/253 (23%)

Query: 3   ADAELIDSLP----KLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLT 58
           A+A LI        K +++ + SAG+D ID+    E  +  +N     +  VA+ A  L 
Sbjct: 35  AEAILIKGRYVPGKKTKMIQSLSAGVDHIDVSGIPENVVLCSNA-GAYSISVAEHAFALL 93

Query: 59  LAVLRRFVRS----EDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR 114
           LA  +    +    ++G      T  +  +S+GI+G G IG  VA  A+AFG  I   +R
Sbjct: 94  LAWAKNICENNYNMKNGNFKQSPTKLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTR 153

Query: 115 AEK-------------------------PNTKY-----------------------KGAL 126
           +                           P T                         +  +
Sbjct: 154 SYVNDGISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADV 213

Query: 127 VDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASG-TEETRKATADI 185
           VD++++++ L        + DV+ +EP + E     +NV+L PH A G + E  +    +
Sbjct: 214 VDKNDMLNFLRNHNDKYYLSDVWWNEPIITETN--PDNVILSPHVAGGMSGEIMQPAVAL 271

Query: 186 VIENLEACFLNKP 198
             EN++  F  KP
Sbjct: 272 AFENIKNFFEGKP 284

Length = 303

>gnl|CDD|240647 cd12170, 2-Hacid_dh_9, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 58.1 bits (141), Expect = 3e-10
 Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 15/145 (10%)

Query: 4   DAELIDSLPKLEIVATCSAGLDK----IDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTL 59
           D E++++ P ++ +  C +   +    +D+   +E GI VT   D   + V +      +
Sbjct: 59  DEEVLEACPNIKYIGMCCSLYSEESANVDIAAARENGITVTGIRDYGDEGVVE----YVI 114

Query: 60  AVLRRFVRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN 119
           + L R +    G+   +   +++G  VGIIGLG  G  +A     FG  + Y SR  KP+
Sbjct: 115 SELIRLLHGFGGKQWKEEPRELTGLKVGIIGLGTTGQMIADALSFFGADVYYYSRTRKPD 174

Query: 120 TKYKG-------ALVDESELVSALL 137
            + KG        L+   +++   L
Sbjct: 175 AEAKGIRYLPLNELLKTVDVICTCL 199

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 294

>gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains

 Score = 58.1 bits (141), Expect = 3e-10
 Identities = 60/267 (22%), Positives = 89/267 (33%), Gaps = 84/267 (31%)

Query: 3   ADAELIDSLPKLEI--VATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLA 60
           AD E ++   +  I  V T + G + IDL   KE G ++   P    + +A+ A  L + 
Sbjct: 56  ADKENLEIYKEYGIKYVFTRTVGFNHIDLEAAKELGFKMARVPSYSPNAIAELAFTLAMT 115

Query: 61  VLRRFVRSEDGEMGYK------------LTTKISGRSVGIIGLGRIGMAVAKRAEAFGC- 107
           + R            +             + +I   +VGIIG GRIG+  AK  +  G  
Sbjct: 116 LSRHT-----AYTASRTANKNFKVDPFMFSKEIRNSTVGIIGTGRIGLTAAKLFKGLGAK 170

Query: 108 ---FISYRSRAEKPNTKY------------------------------------------ 122
              +  Y S A K    +                                          
Sbjct: 171 VIGYDIYPSDAAKDVVTFVSLDELLKKSDIISLHVPYIKGKNDKLINKEFISKMKDGAIL 230

Query: 123 ----KGALVDESELVSALLEDRLAAAVLDVFEHEP--------------QVPEELFGL-E 163
               +G L DE  ++ AL   +LA    DV  +E                V E+L  L  
Sbjct: 231 INTARGELQDEEAILEALESGKLAGFGTDVLNNEKEIFFKDFDGDKIEDPVVEKLLDLYP 290

Query: 164 NVVLLPHAASGTEETRKATADIVIENL 190
            V+L PH  S T+E      +   ENL
Sbjct: 291 RVLLTPHIGSYTDEALSNMIETSYENL 317

(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 330

>gnl|CDD|240627 cd05302, FDH, NAD-dependent Formate Dehydrogenase (FDH)

 Score = 57.3 bits (139), Expect = 6e-10
 Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 10/128 (7%)

Query: 5   AELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR 64
           AE I     L++  T   G D +DL    ++GI V          VA+  + + L ++R 
Sbjct: 76  AERIAKAKNLKLALTAGIGSDHVDLQAANDRGITVAEVTGSNVVSVAEHVVMMILILVRN 135

Query: 65  FVRS-----EDG----EMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA 115
           +V       E G    ++  +    + G++VG +G GRIG+ V +R + F   + Y  R 
Sbjct: 136 YVPGHEQAIEGGWNVADVVKR-AYDLEGKTVGTVGAGRIGLRVLRRLKPFDVHLLYYDRH 194

Query: 116 EKPNTKYK 123
             P    K
Sbjct: 195 RLPEEVEK 202

NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form. Length = 348

>gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional

 Score = 57.0 bits (138), Expect = 8e-10
 Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 8/118 (6%)

Query: 5   AELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR 64
           AE I   P L++  T   G D +DL    E GI V       +  VA+  + + LA++R 
Sbjct: 106 AERIAKAPNLKLAITAGIGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMILALVRN 165

Query: 65  FVRSEDGEM--GYKLTTKIS------GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR 114
           +  S    +  G+ +   +S      G +VGI+G GRIG+AV +R + F   + Y  R
Sbjct: 166 YEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDR 223

Length = 385

>gnl|CDD|183550 PRK12480, PRK12480, D-lactate dehydrogenase; Provisional

 Score = 56.5 bits (136), Expect = 1e-09
 Identities = 55/244 (22%), Positives = 94/244 (38%), Gaps = 75/244 (30%)

Query: 9   DSLPKLE-----IVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
           D  PKLE      +A  +AG D  DL   K+  I ++N P    + +A+ ++ + L ++R
Sbjct: 60  DVYPKLESYGIKQIAQRTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVR 119

Query: 64  RFVRSEDGEMGYKLT-------TKISGRSVGIIGLGRIGMAVAKRAEAFGC--------- 107
           RF   E     +  T         +   +V IIG GRIG A AK    FG          
Sbjct: 120 RFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYP 179

Query: 108 -----FISYRSRAEK------------PNTK-----------------------YKGALV 127
                F++Y+   ++            P  K                        +GA++
Sbjct: 180 NKDLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVI 239

Query: 128 DESELVSALLEDRLAAAVLDVFEHEP--------------QVPEELFGLENVVLLPHAAS 173
           +  +L++A+ +  L  A +D +E+E               +   EL   E +++ PH A 
Sbjct: 240 NTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIAF 299

Query: 174 GTEE 177
            ++E
Sbjct: 300 FSDE 303

Length = 330

>gnl|CDD|240637 cd12160, 2-Hacid_dh_3, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 54.7 bits (132), Expect = 4e-09
 Identities = 32/79 (40%), Positives = 42/79 (53%), Gaps = 6/79 (7%)

Query: 123 KGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEE--LFGLENVVLLPHAASGTEETRK 180
           +GA VDE  LV+AL   RL  A LDV   EP +P    L+   N++L PHAA G  +   
Sbjct: 233 RGATVDEDALVAALESGRLGGAALDVTATEP-LPASSPLWDAPNLILTPHAAGGRPQ--- 288

Query: 181 ATADIVIENLEACFLNKPL 199
              +++ ENL A     PL
Sbjct: 289 GAEELIAENLRAFLAGGPL 307

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|240657 cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 53/223 (23%), Positives = 84/223 (37%), Gaps = 56/223 (25%)

Query: 36  GIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRS---EDGEMGYKLTTKISGRSVGIIGLG 92
           G  VT    V  + +A+  +   LA  +R          +   +    ++G ++GI+G G
Sbjct: 85  GPVVTCARGVAAEAIAEFVLAAILAAAKRLPEIWVKGAEQWRREPLGSLAGSTLGIVGFG 144

Query: 93  RIGMAVAKRAEAFGCFISYRSRAEKPN---------------------------TKYKGA 125
            IG A+A+RA A G  +    R+ +P+                           T     
Sbjct: 145 AIGQALARRALALGMRVLALRRSGRPSDVPGVEAAADLAELFARSDHLVLAAPLTPETRH 204

Query: 126 LVDESELVS-------------------ALLE----DRLAAAVLDVFEHEPQVPEE--LF 160
           L++   L                     ALLE     R++ A LDV + EP +PE   L+
Sbjct: 205 LINADVLAQAKPGLHLINIARGGLVDQEALLEALDSGRISLASLDVTDPEP-LPEGHPLY 263

Query: 161 GLENVVLLPHAASGTEETRKATADIVIENLEACFLNKPLLTPV 203
               V L PH ++   + R+  AD  +ENL      +PL   V
Sbjct: 264 THPRVRLSPHTSAIAPDGRRNLADRFLENLARYRAGQPLHDLV 306

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 308

>gnl|CDD|240640 cd12163, 2-Hacid_dh_5, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 47.7 bits (114), Expect = 9e-07
 Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 13/110 (11%)

Query: 9   DSLPKLEIVATCSAGLDKI---DLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRF 65
           + +P L +V   SAG D      L K  +  + +     +    +A+  IG  L +   F
Sbjct: 50  EDVPNLRLVQLFSAGADHWLGHPLYK--DPEVPLCTASGIHGPQIAEWVIGTWLVLSHHF 107

Query: 66  VR--------SEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGC 107
           ++        +              G+ VGI+G G IG   A+ A+A G 
Sbjct: 108 LQYIELQKEQTWGRRQEAYSVEDSVGKRVGILGYGSIGRQTARLAQALGM 157

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 334

>gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional

 Score = 47.5 bits (113), Expect = 1e-06
 Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 10/119 (8%)

Query: 5   AELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR 64
           AE I     LE++ T   G D IDL      G+ V          VA+  +   L +LR 
Sbjct: 113 AERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRN 172

Query: 65  FV----RSEDGE-----MGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR 114
           F+    +   GE     + Y+    + G++VG +G GRIG  + +R + F C + Y  R
Sbjct: 173 FLPGYHQVVSGEWNVAGIAYR-AYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDR 230

Length = 386

>gnl|CDD|240640 cd12163, 2-Hacid_dh_5, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 3/83 (3%)

Query: 123 KGALVDESELVSALLEDRLAAAVLDVFEHEPQVPE--ELFGLENVVLLPHAASGTEETRK 180
           +G+LVD   LV+AL   ++  A LDV + EP +P    L+   NV++ PH +  T+E   
Sbjct: 248 RGSLVDTDALVAALESGQIRGAALDVTDPEP-LPADHPLWSAPNVIITPHVSWQTQEYFD 306

Query: 181 ATADIVIENLEACFLNKPLLTPV 203
              D++ ENLE     +PL+  V
Sbjct: 307 RALDVLEENLERLRKGEPLINLV 329

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 334

>gnl|CDD|185366 PRK15469, ghrA, bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 4/62 (6%)

Query: 123 KGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEE-LFGLENVVLLPHAASGTEETRKA 181
           +G  V E +L++AL   ++  A+LDVF  EP  PE  L+    V + PH A+    TR A
Sbjct: 227 RGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHVAA---VTRPA 283

Query: 182 TA 183
            A
Sbjct: 284 EA 285

Length = 312

>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases

 Score = 36.8 bits (85), Expect = 0.004
 Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 6/111 (5%)

Query: 1   VGADAELIDSLPKLEIVATCSAGLDKIDLVKC-KEKGIQVTNTPDVLTDDVADAAIG--- 56
             A+  LI  L    ++ T + G D  DL +     G+       V    +   +IG   
Sbjct: 76  TNAEYALIQKLG-DRLLFTYTIGADHRDLTEALARAGLTAIAVEGVELPLLTSNSIGAGE 134

Query: 57  LTLAVLRRFVRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGC 107
           L++  + RF+  +           ++G++V ++G G +G   A+     G 
Sbjct: 135 LSVQFIARFLEVQQPGRLGGAPD-VAGKTVVVVGAGVVGKEAAQMLRGLGA 184

The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	204
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	100.0
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	100.0
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	100.0
PRK06487	317	glycerate dehydrogenase; Provisional	100.0
PRK13243	333	glyoxylate reductase; Reviewed	100.0
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	100.0
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PRK06932	314	glycerate dehydrogenase; Provisional	100.0
PLN03139	386	formate dehydrogenase; Provisional	100.0
PRK07574	385	formate dehydrogenase; Provisional	100.0
PLN02306	386	hydroxypyruvate reductase	100.0
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	100.0
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PLN02928	347	oxidoreductase family protein	100.0
PRK12480	330	D-lactate dehydrogenase; Provisional	100.0
PRK08605	332	D-lactate dehydrogenase; Validated	100.0
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	100.0
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	100.0
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	100.0
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	100.0
PRK06436	303	glycerate dehydrogenase; Provisional	100.0
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	100.0
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	100.0
KOG0067	435	consensus Transcription factor CtBP [Transcription	99.92
PF00389	133	2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydr	99.8
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.6
PTZ00075	476	Adenosylhomocysteinase; Provisional	99.48
PRK08306	296	dipicolinate synthase subunit A; Reviewed	99.15
PLN02494	477	adenosylhomocysteinase	98.76
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	98.44
PRK13403	335	ketol-acid reductoisomerase; Provisional	98.36
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.34
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	98.16
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	98.14
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	98.1
PLN02477	410	glutamate dehydrogenase	97.92
PRK14031	444	glutamate dehydrogenase; Provisional	97.87
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	97.83
PRK09414	445	glutamate dehydrogenase; Provisional	97.82
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	97.8
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	97.76
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	97.69
PRK14030	445	glutamate dehydrogenase; Provisional	97.67
PRK05479	330	ketol-acid reductoisomerase; Provisional	97.62
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	97.59
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	97.37
PLN02712	667	arogenate dehydrogenase	97.25
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.21
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	97.2
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	97.1
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.98
PLN02256	304	arogenate dehydrogenase	96.89
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	96.89
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.84
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	96.83
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.79
PRK05225	487	ketol-acid reductoisomerase; Validated	96.78
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	96.71
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.69
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	96.65
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	96.65
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	96.64
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	96.62
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	96.6
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.6
PRK07417	279	arogenate dehydrogenase; Reviewed	96.47
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.44
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	96.43
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.39
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	96.38
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	96.37
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	96.37
PLN02712	667	arogenate dehydrogenase	96.37
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.35
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	96.32
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	96.32
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	96.28
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	96.24
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.14
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	96.13
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	96.13
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	96.13
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.12
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	96.1
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	96.08
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	95.97
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	95.97
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	95.96
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.94
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.93
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	95.92
PRK06545	359	prephenate dehydrogenase; Validated	95.89
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	95.87
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	95.86
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	95.79
PRK04148	134	hypothetical protein; Provisional	95.75
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	95.69
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	95.69
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	95.66
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	95.65
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	95.62
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	95.61
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	95.58
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.58
PLN02272	421	glyceraldehyde-3-phosphate dehydrogenase	95.57
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	95.56
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	95.51
PRK06841	255	short chain dehydrogenase; Provisional	95.46
PRK08862	227	short chain dehydrogenase; Provisional	95.45
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	95.44
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	95.42
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.42
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.38
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	95.36
PRK06392	326	homoserine dehydrogenase; Provisional	95.34
PRK08507	275	prephenate dehydrogenase; Validated	95.33
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	95.33
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.32
PRK15059	292	tartronate semialdehyde reductase; Provisional	95.3
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	95.3
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	95.27
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.25
PRK06523	260	short chain dehydrogenase; Provisional	95.25
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.23
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	95.2
PRK07523	255	gluconate 5-dehydrogenase; Provisional	95.17
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	95.16
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.11
PLN02688	266	pyrroline-5-carboxylate reductase	95.11
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.1
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.1
PRK08818	370	prephenate dehydrogenase; Provisional	95.09
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.07
PRK06398	258	aldose dehydrogenase; Validated	95.04
PRK12828	239	short chain dehydrogenase; Provisional	95.02
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.02
PRK08374	336	homoserine dehydrogenase; Provisional	94.97
PLN02948	577	phosphoribosylaminoimidazole carboxylase	94.96
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	94.96
PF00044	151	Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase,	94.93
TIGR01161	352	purK phosphoribosylaminoimidazole carboxylase, Pur	94.91
PRK09496	453	trkA potassium transporter peripheral membrane com	94.88
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	94.87
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	94.86
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.84
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	94.83
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	94.83
PLN00203	519	glutamyl-tRNA reductase	94.82
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.82
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	94.79
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	94.76
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	94.76
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	94.72
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	94.7
PRK07890	258	short chain dehydrogenase; Provisional	94.69
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.68
PRK06949	258	short chain dehydrogenase; Provisional	94.67
PRK08655	437	prephenate dehydrogenase; Provisional	94.66
PRK08339	263	short chain dehydrogenase; Provisional	94.65
PRK05867	253	short chain dehydrogenase; Provisional	94.65
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.64
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.63
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	94.62
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.61
PLN02858	1378	fructose-bisphosphate aldolase	94.56
TIGR01142	380	purT phosphoribosylglycinamide formyltransferase 2	94.55
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	94.53
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	94.53
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	94.49
PRK12548	289	shikimate 5-dehydrogenase; Provisional	94.49
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.47
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	94.46
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	94.46
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	94.44
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	94.43
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	94.42
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	94.41
PRK08265	261	short chain dehydrogenase; Provisional	94.38
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	94.36
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	94.33
PRK07831	262	short chain dehydrogenase; Provisional	94.33
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	94.32
COG0057	335	GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt	94.31
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	94.27
PRK07680	273	late competence protein ComER; Validated	94.23
PRK06125	259	short chain dehydrogenase; Provisional	94.2
PRK13940	414	glutamyl-tRNA reductase; Provisional	94.17
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	94.14
PRK07062	265	short chain dehydrogenase; Provisional	94.13
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	94.13
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	94.13
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	94.12
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	94.11
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	94.11
PRK08589	272	short chain dehydrogenase; Validated	94.07
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	94.05
PRK06139	330	short chain dehydrogenase; Provisional	94.03
PRK06172	253	short chain dehydrogenase; Provisional	93.99
PRK08303	305	short chain dehydrogenase; Provisional	93.98
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	93.94
PRK07074	257	short chain dehydrogenase; Provisional	93.94
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	93.92
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.89
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.88
PRK09288	395	purT phosphoribosylglycinamide formyltransferase 2	93.88
PRK09496	453	trkA potassium transporter peripheral membrane com	93.87
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.86
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	93.85
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	93.85
PTZ00431	260	pyrroline carboxylate reductase; Provisional	93.84
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	93.76
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.74
PRK05866	293	short chain dehydrogenase; Provisional	93.74
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	93.74
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	93.73
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	93.7
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	93.7
PRK09242	257	tropinone reductase; Provisional	93.68
PRK06197	306	short chain dehydrogenase; Provisional	93.65
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	93.65
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.65
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	93.65
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	93.63
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	93.62
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.61
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	93.6
PRK08264	238	short chain dehydrogenase; Validated	93.59
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	93.59
PRK05875	276	short chain dehydrogenase; Provisional	93.58
PRK07063	260	short chain dehydrogenase; Provisional	93.57
PRK08328	231	hypothetical protein; Provisional	93.54
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	93.51
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	93.51
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	93.46
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	93.46
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	93.45
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	93.43
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	93.42
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	93.36
CHL00194	317	ycf39 Ycf39; Provisional	93.36
PRK05872	296	short chain dehydrogenase; Provisional	93.35
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	93.35
PRK06124	256	gluconate 5-dehydrogenase; Provisional	93.33
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	93.32
PRK06114	254	short chain dehydrogenase; Provisional	93.3
PRK13303	265	L-aspartate dehydrogenase; Provisional	93.28
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.23
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	93.22
PRK05562	223	precorrin-2 dehydrogenase; Provisional	93.22
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	93.21
PRK05993	277	short chain dehydrogenase; Provisional	93.21
PRK06182	273	short chain dehydrogenase; Validated	93.2
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	93.18
PRK07577	234	short chain dehydrogenase; Provisional	93.17
PRK14982	340	acyl-ACP reductase; Provisional	93.14
PRK08703	239	short chain dehydrogenase; Provisional	93.13
PRK07814	263	short chain dehydrogenase; Provisional	93.11
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	93.11
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	93.11
PLN02858	1378	fructose-bisphosphate aldolase	93.08
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	93.08
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	93.03
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	93.0
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.98
PRK08277	278	D-mannonate oxidoreductase; Provisional	92.98
PRK08085	254	gluconate 5-dehydrogenase; Provisional	92.97
KOG0409	327	consensus Predicted dehydrogenase [General functio	92.96
PRK07326	237	short chain dehydrogenase; Provisional	92.95
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	92.95
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	92.93
PRK08278	273	short chain dehydrogenase; Provisional	92.91
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	92.9
PRK13304	265	L-aspartate dehydrogenase; Reviewed	92.9
PRK12829	264	short chain dehydrogenase; Provisional	92.87
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	92.86
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	92.85
PRK05876	275	short chain dehydrogenase; Provisional	92.85
PLN02253	280	xanthoxin dehydrogenase	92.81
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	92.78
PRK06940	275	short chain dehydrogenase; Provisional	92.78
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.75
PRK06483	236	dihydromonapterin reductase; Provisional	92.73
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	92.72
PRK07478	254	short chain dehydrogenase; Provisional	92.72
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.71
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	92.7
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	92.68
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	92.67
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	92.66
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	92.64
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	92.61
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	92.61
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	92.61
PRK07067	257	sorbitol dehydrogenase; Provisional	92.56
PRK06057	255	short chain dehydrogenase; Provisional	92.52
PRK06194	287	hypothetical protein; Provisional	92.5
PRK07856	252	short chain dehydrogenase; Provisional	92.5
PRK07060	245	short chain dehydrogenase; Provisional	92.44
PRK06153	393	hypothetical protein; Provisional	92.43
PRK07576	264	short chain dehydrogenase; Provisional	92.39
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	92.34
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	92.33
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	92.3
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	92.28
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	92.26
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	92.24
PRK06179	270	short chain dehydrogenase; Provisional	92.22
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	92.16
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	92.15
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	92.14
PRK07454	241	short chain dehydrogenase; Provisional	92.1
PRK07109	334	short chain dehydrogenase; Provisional	92.07
PRK03562	621	glutathione-regulated potassium-efflux system prot	92.07
PRK10669	558	putative cation:proton antiport protein; Provision	92.07
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	92.03
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	92.03
PRK08628	258	short chain dehydrogenase; Provisional	92.01
PRK08936	261	glucose-1-dehydrogenase; Provisional	92.01
PRK07806	248	short chain dehydrogenase; Provisional	92.01
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	92.0
PRK03659	601	glutathione-regulated potassium-efflux system prot	92.0
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	91.99
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	91.94
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	91.9
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	91.88
PRK09186	256	flagellin modification protein A; Provisional	91.85
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	91.83
PRK05717	255	oxidoreductase; Validated	91.81
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	91.78
PRK12744	257	short chain dehydrogenase; Provisional	91.75
KOG2250	514	consensus Glutamate/leucine/phenylalanine/valine d	91.74
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	91.74
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	91.68
PRK10637	457	cysG siroheme synthase; Provisional	91.68
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	91.67
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	91.67
PRK07097	265	gluconate 5-dehydrogenase; Provisional	91.66
PLN02740	381	Alcohol dehydrogenase-like	91.66
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	91.64
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	91.63
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	91.6
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	91.59
PRK15116	268	sulfur acceptor protein CsdL; Provisional	91.59
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	91.57
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	91.54
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	91.54
PRK07774	250	short chain dehydrogenase; Provisional	91.54
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	91.52
PRK06914	280	short chain dehydrogenase; Provisional	91.5
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	91.49
PLN02586	360	probable cinnamyl alcohol dehydrogenase	91.47
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	91.46
PRK08324	681	short chain dehydrogenase; Validated	91.41
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	91.4
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	91.39
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	91.39
PLN03209	576	translocon at the inner envelope of chloroplast su	91.37
PRK03815	401	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.36
PRK06180	277	short chain dehydrogenase; Provisional	91.35
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.32
KOG0455	364	consensus Homoserine dehydrogenase [Amino acid tra	91.31
PRK06500	249	short chain dehydrogenase; Provisional	91.31
COG0540	316	PyrB Aspartate carbamoyltransferase, catalytic cha	91.29
PRK06138	252	short chain dehydrogenase; Provisional	91.27
PRK12939	250	short chain dehydrogenase; Provisional	91.26
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	91.24
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	91.23
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	91.19
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	91.18
PRK08223	287	hypothetical protein; Validated	91.15
PRK06701	290	short chain dehydrogenase; Provisional	91.11
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	91.09
PTZ00117	319	malate dehydrogenase; Provisional	91.07
PRK12742	237	oxidoreductase; Provisional	91.05
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	91.01
PRK05854	313	short chain dehydrogenase; Provisional	91.0
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	91.0
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	90.96
PRK06111	450	acetyl-CoA carboxylase biotin carboxylase subunit;	90.95
PRK07985	294	oxidoreductase; Provisional	90.94
PRK08251	248	short chain dehydrogenase; Provisional	90.93
PRK12859	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	90.93
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	90.92
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	90.91
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	90.88
PRK07677	252	short chain dehydrogenase; Provisional	90.86
PRK09072	263	short chain dehydrogenase; Provisional	90.85
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	90.83
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	90.8
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	90.8
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	90.78
PRK07825	273	short chain dehydrogenase; Provisional	90.77
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	90.75
COG0281	432	SfcA Malic enzyme [Energy production and conversio	90.72
PLN02427	386	UDP-apiose/xylose synthase	90.68
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	90.64
PRK07904	253	short chain dehydrogenase; Provisional	90.63
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	90.59
PRK06128	300	oxidoreductase; Provisional	90.58
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	90.56
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	90.56
PLN02353	473	probable UDP-glucose 6-dehydrogenase	90.53
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.51
KOG1207	245	consensus Diacetyl reductase/L-xylulose reductase	90.5
PRK12367	245	short chain dehydrogenase; Provisional	90.5
PRK08213	259	gluconate 5-dehydrogenase; Provisional	90.48
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	90.46
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	90.44
TIGR00514	449	accC acetyl-CoA carboxylase, biotin carboxylase su	90.42
PLN02178	375	cinnamyl-alcohol dehydrogenase	90.42
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	90.41
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	90.39
PRK08017	256	oxidoreductase; Provisional	90.39
PLN02695	370	GDP-D-mannose-3',5'-epimerase	90.38
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	90.37
PTZ00082	321	L-lactate dehydrogenase; Provisional	90.31
PRK06196	315	oxidoreductase; Provisional	90.28
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	90.27
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	90.26
PRK08267	260	short chain dehydrogenase; Provisional	90.25
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	90.17
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	90.15
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	90.15
PRK06223	307	malate dehydrogenase; Reviewed	90.14
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	90.14
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	90.11
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	90.08
PRK07411	390	hypothetical protein; Validated	90.06
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	90.03
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	89.95
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	89.9
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	89.9
PRK07791	286	short chain dehydrogenase; Provisional	89.89
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	89.89
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	89.85
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	89.85
PRK08177	225	short chain dehydrogenase; Provisional	89.78
PRK06198	260	short chain dehydrogenase; Provisional	89.76
PRK08289	477	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	89.76
PLN02240	352	UDP-glucose 4-epimerase	89.74
PTZ00058	561	glutathione reductase; Provisional	89.69
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	89.64
PRK08226	263	short chain dehydrogenase; Provisional	89.62
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	89.6
COG2910	211	Putative NADH-flavin reductase [General function p	89.6
PRK08340	259	glucose-1-dehydrogenase; Provisional	89.55
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	89.51
PLN02896	353	cinnamyl-alcohol dehydrogenase	89.47
PRK06270	341	homoserine dehydrogenase; Provisional	89.44
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	89.44
PLN02358	338	glyceraldehyde-3-phosphate dehydrogenase	89.42
PLN02572	442	UDP-sulfoquinovose synthase	89.35
PRK07035	252	short chain dehydrogenase; Provisional	89.32
PRK08643	256	acetoin reductase; Validated	89.29
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	89.29
PRK07201	657	short chain dehydrogenase; Provisional	89.25
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	89.17
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	89.09
PLN02653	340	GDP-mannose 4,6-dehydratase	89.07
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	89.06
PRK07236	386	hypothetical protein; Provisional	89.03
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	88.92
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	88.91
PTZ00434	361	cytosolic glyceraldehyde 3-phosphate dehydrogenase	88.91
PRK12827	249	short chain dehydrogenase; Provisional	88.86
PRK12862	763	malic enzyme; Reviewed	88.86
PRK05586	447	biotin carboxylase; Validated	88.81
PRK00048	257	dihydrodipicolinate reductase; Provisional	88.81
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	88.81
PLN02514	357	cinnamyl-alcohol dehydrogenase	88.76
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	88.74
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.72
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	88.66
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	88.61
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	88.6
PLN02780	320	ketoreductase/ oxidoreductase	88.59
PRK12861	764	malic enzyme; Reviewed	88.56
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	88.55
PRK10675	338	UDP-galactose-4-epimerase; Provisional	88.48
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	88.44
PRK07024	257	short chain dehydrogenase; Provisional	88.41
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	88.4
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	88.38
TIGR00521	390	coaBC_dfp phosphopantothenoylcysteine decarboxylas	88.37
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	88.27
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	88.16
PRK06720	169	hypothetical protein; Provisional	88.14
COG0027	394	PurT Formate-dependent phosphoribosylglycinamide f	88.14
PRK07102	243	short chain dehydrogenase; Provisional	88.13
PRK06141	314	ornithine cyclodeaminase; Validated	88.13
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	88.13
PRK12833	467	acetyl-CoA carboxylase biotin carboxylase subunit;	88.1
PRK06300	299	enoyl-(acyl carrier protein) reductase; Provisiona	88.07
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	88.04
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	88.04
PLN03096	395	glyceraldehyde-3-phosphate dehydrogenase A; Provis	87.93
TIGR02415	254	23BDH acetoin reductases. One member of this famil	87.91
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	87.88
PRK07775	274	short chain dehydrogenase; Provisional	87.83
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	87.81

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=100.00  E-value=3.2e-59  Score=399.91  Aligned_cols=199  Identities=37%  Similarity=0.548  Sum_probs=184.6

Q ss_pred             CCCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCCC
Q 045521            1 VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEMG   74 (204)
Q Consensus         1 t~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~~   74 (204)
                      |++++++++.+|+||+|++.++|+|+||+++++++||.|+|+|+.++.+||||++++||++.|+      .+++|.|.+.
T Consensus        54 ~~v~~~~l~~~~~Lk~I~~~g~Gvd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~  133 (324)
T COG0111          54 TPVTEEVLAAAPNLKAIGRAGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRK  133 (324)
T ss_pred             CCCCHHHHhhCCCceEEEEccccccccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCcccc
Confidence            6899999999999999999999999999999999999999999999999999999999999999      5688999963


Q ss_pred             CccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC-CC---CC---------------------------
Q 045521           75 YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN-TK---YK---------------------------  123 (204)
Q Consensus        75 ~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~-~~---~~---------------------------  123 (204)
                      ...+.+|+||||||||+|+||+++|+++++|||+|++||++..+. ..   +.                           
T Consensus       134 ~~~g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g  213 (324)
T COG0111         134 AFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRG  213 (324)
T ss_pred             ccccccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhc
Confidence            344679999999999999999999999999999999999954331 11   00                           


Q ss_pred             ---------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCC-CcCCCCceEEcccCCCCcHHHHHH
Q 045521          124 ---------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPE-ELFGLENVVLLPHAASGTEETRKA  181 (204)
Q Consensus       124 ---------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~-~l~~~~nvilTPH~a~~t~~~~~~  181 (204)
                                           |++||++||++||++|+|+||+||||++||++++ |||++|||++|||+|+.|.|++.+
T Consensus       214 ~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~~~  293 (324)
T COG0111         214 LINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQER  293 (324)
T ss_pred             ccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHHHHHH
Confidence                                 9999999999999999999999999999999886 999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCC
Q 045521          182 TADIVIENLEACFLNKPL  199 (204)
Q Consensus       182 ~~~~~~~nl~~~~~g~~~  199 (204)
                      +..++++|+.+|++|+++
T Consensus       294 ~~~~~~~~i~~~l~g~~~  311 (324)
T COG0111         294 VAEIVAENIVRYLAGGPV  311 (324)
T ss_pred             HHHHHHHHHHHHHcCCCC
Confidence            999999999999999984

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=100.00  E-value=1.6e-58  Score=396.43  Aligned_cols=203  Identities=37%  Similarity=0.559  Sum_probs=186.3

Q ss_pred             CCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCCC-
Q 045521            2 GADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEMG-   74 (204)
Q Consensus         2 ~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~~-   74 (204)
                      ++++++++++|+||+|++.|+|+|+||+++|+++||+|+|+||+++++||||++++||+++|+      .+++|.|... 
T Consensus        55 ~~~~~~l~~~p~Lk~I~~~g~G~d~id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~  134 (323)
T PRK15409         55 KVDAALLEKMPKLRAASTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASI  134 (323)
T ss_pred             CCCHHHHhhCCCCeEEEECceecccccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccC
Confidence            689999999999999999999999999999999999999999999999999999999999999      5788999731 


Q ss_pred             --CccccccCCCEEEEEeCChHHHHHHHHHh-hcCCEEEEEcCCCCCCC------CCC----------------------
Q 045521           75 --YKLTTKISGRSVGIIGLGRIGMAVAKRAE-AFGCFISYRSRAEKPNT------KYK----------------------  123 (204)
Q Consensus        75 --~~~~~~l~g~tvGIvG~G~IG~~va~~~~-~fg~~V~~~~r~~~~~~------~~~----------------------  123 (204)
                        ...+.+|+||||||||+|+||+++|++++ +|||+|+|++|+..+..      .+.                      
T Consensus       135 ~~~~~g~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T  214 (323)
T PRK15409        135 GPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDET  214 (323)
T ss_pred             ccccccCCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChHH
Confidence              12477999999999999999999999998 99999999998743211      010                      


Q ss_pred             -----------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCC-CcCCCCceEEcccCCCCcHHHH
Q 045521          124 -----------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPE-ELFGLENVVLLPHAASGTEETR  179 (204)
Q Consensus       124 -----------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~-~l~~~~nvilTPH~a~~t~~~~  179 (204)
                                             |++|||+||++||++|+|+||+||||++||++.+ |||++|||++|||+|+.|.+++
T Consensus       215 ~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~  294 (323)
T PRK15409        215 HHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETR  294 (323)
T ss_pred             hhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHH
Confidence                                   9999999999999999999999999999998754 9999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCCCC
Q 045521          180 KATADIVIENLEACFLNKPLLTPVV  204 (204)
Q Consensus       180 ~~~~~~~~~nl~~~~~g~~~~~~v~  204 (204)
                      .++.+.+++|+.+|++|+++.+.||
T Consensus       295 ~~~~~~~~~ni~~~~~g~~~~~~vn  319 (323)
T PRK15409        295 YNMAACAVDNLIDALQGKVEKNCVN  319 (323)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCcccC
Confidence            9999999999999999999999886

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=100.00  E-value=2.9e-58  Score=393.82  Aligned_cols=204  Identities=47%  Similarity=0.692  Sum_probs=187.7

Q ss_pred             CCCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCCC
Q 045521            1 VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEMG   74 (204)
Q Consensus         1 t~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~~   74 (204)
                      +++++++++++|+||+|++.|+||||||+++|+++||.|+|+|++++++||||++++||++.|+      .+++|.|...
T Consensus        54 ~~i~~~~l~~~p~LKlIa~~~~G~D~vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~  133 (324)
T COG1052          54 DRIDAEVLEKLPGLKLIATRSAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLS  133 (324)
T ss_pred             CCcCHHHHHhCCCcEEEEEeccccCcccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCccccc
Confidence            4689999999999999999999999999999999999999999999999999999999999999      5788999852


Q ss_pred             ----CccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCC------CCC---------------------
Q 045521           75 ----YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNT------KYK---------------------  123 (204)
Q Consensus        75 ----~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~------~~~---------------------  123 (204)
                          ...+.+++|||+||+|+|+||+++|+++++|||+|+||+|++++..      .|.                     
T Consensus       134 ~~~~~~~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~l~ell~~sDii~l~~Plt~~  213 (324)
T COG1052         134 GGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNPEAEKELGARYVDLDELLAESDIISLHCPLTPE  213 (324)
T ss_pred             CCcccccccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCChHHHhhcCceeccHHHHHHhCCEEEEeCCCChH
Confidence                2457899999999999999999999999999999999999874211      111                     


Q ss_pred             ------------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCC-CCCcCCCCc---eEEcccCCCCc
Q 045521          124 ------------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQV-PEELFGLEN---VVLLPHAASGT  175 (204)
Q Consensus       124 ------------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~-~~~l~~~~n---vilTPH~a~~t  175 (204)
                                              |++||++||++||++|+|+||+||||+.||.+ ++||++++|   |++|||+|+.|
T Consensus       214 T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at  293 (324)
T COG1052         214 TRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASAT  293 (324)
T ss_pred             HhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEcccccccc
Confidence                                    99999999999999999999999999999986 568887777   99999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 045521          176 EETRKATADIVIENLEACFLNKPLLTPVV  204 (204)
Q Consensus       176 ~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  204 (204)
                      .+++.+|.+.+++|+.+|++|+++.++|+
T Consensus       294 ~ea~~~m~~~~~~nl~~~~~g~~~~~~v~  322 (324)
T COG1052         294 EEARKAMAELALENLEAFFDGGVPPNEVN  322 (324)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence            99999999999999999999999999885

>PRK06487 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=4.4e-57  Score=387.00  Aligned_cols=203  Identities=32%  Similarity=0.492  Sum_probs=182.5

Q ss_pred             CCCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCCC
Q 045521            1 VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEMG   74 (204)
Q Consensus         1 t~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~~   74 (204)
                      +++++++++++|+||||+++|+|+|++|+++++++||.|+|+||+++.+||||++++||++.|+      .+++|.|.+.
T Consensus        54 ~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~  133 (317)
T PRK06487         54 VALDAAALAAAPQLKLILVAATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQS  133 (317)
T ss_pred             CCCCHHHHhhCCCCeEEEEcCccccccCHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccC
Confidence            3689999999999999999999999999999999999999999999999999999999999999      4678999741


Q ss_pred             C------ccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCC-CCC------------------------
Q 045521           75 Y------KLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNT-KYK------------------------  123 (204)
Q Consensus        75 ~------~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~-~~~------------------------  123 (204)
                      .      ..+.+|+||||||||+|+||+++|+++++|||+|++|+|+.++.. .+.                        
T Consensus       134 ~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~~~~~~~~l~ell~~sDiv~l~lPlt~~T~~  213 (317)
T PRK06487        134 SQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRH  213 (317)
T ss_pred             cccccccCcccccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCcccccccCHHHHHHhCCEEEECCCCChHHhc
Confidence            1      124689999999999999999999999999999999998643210 000                        


Q ss_pred             ---------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCC-CcCC--CCceEEcccCCCCcHHHH
Q 045521          124 ---------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPE-ELFG--LENVVLLPHAASGTEETR  179 (204)
Q Consensus       124 ---------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~-~l~~--~~nvilTPH~a~~t~~~~  179 (204)
                                           |++|||+||++||++|+|+||+||||++||++.+ |||+  +|||++|||+|+.|.++.
T Consensus       214 li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~e~~  293 (317)
T PRK06487        214 LIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREAR  293 (317)
T ss_pred             CcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCHHHH
Confidence                                 9999999999999999999999999999998864 8995  899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCCCC
Q 045521          180 KATADIVIENLEACFLNKPLLTPVV  204 (204)
Q Consensus       180 ~~~~~~~~~nl~~~~~g~~~~~~v~  204 (204)
                      .++.+.+++||.+|++|+++ +.||
T Consensus       294 ~~~~~~~~~ni~~~~~g~~~-~~v~  317 (317)
T PRK06487        294 QRIVGQLAENARAFFAGKPL-RVVS  317 (317)
T ss_pred             HHHHHHHHHHHHHHHcCCCC-cCCC
Confidence            99999999999999999864 5554

>PRK13243 glyoxylate reductase; Reviewed

Probab=100.00  E-value=4e-57  Score=389.56  Aligned_cols=204  Identities=48%  Similarity=0.662  Sum_probs=187.3

Q ss_pred             CCCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCCC
Q 045521            1 VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEMG   74 (204)
Q Consensus         1 t~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~~   74 (204)
                      +++++++++++|+||||+++|+|+|+||+++|+++||.|+|+||+++.+||||++++||++.|+      .+++|.|.+.
T Consensus        55 ~~~~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~  134 (333)
T PRK13243         55 ERIDCEVFEAAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRR  134 (333)
T ss_pred             CCCCHHHHhhCCCCeEEEecCccccccCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcc
Confidence            3689999999999999999999999999999999999999999999999999999999999999      4678999741


Q ss_pred             -------CccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCC------CCC------------------
Q 045521           75 -------YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNT------KYK------------------  123 (204)
Q Consensus        75 -------~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~------~~~------------------  123 (204)
                             ...+.+|+||||||||+|+||+.+|+++++|||+|++|+|+.++..      .+.                  
T Consensus       135 ~~~~~~~~~~g~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~  214 (333)
T PRK13243        135 GVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPL  214 (333)
T ss_pred             ccccccccccccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCC
Confidence                   1146799999999999999999999999999999999998754310      000                  


Q ss_pred             ---------------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCcCCCCceEEcccCCCCcH
Q 045521          124 ---------------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTE  176 (204)
Q Consensus       124 ---------------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l~~~~nvilTPH~a~~t~  176 (204)
                                                 |++||++||+++|++|+|+||+||||++||++++|||++|||++|||+|+.|.
T Consensus       215 t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~~~pL~~~~nvilTPHia~~t~  294 (333)
T PRK13243        215 TKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIGSATF  294 (333)
T ss_pred             ChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCCCchhhcCCCEEECCcCCcCHH
Confidence                                       99999999999999999999999999999998779999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 045521          177 ETRKATADIVIENLEACFLNKPLLTPVV  204 (204)
Q Consensus       177 ~~~~~~~~~~~~nl~~~~~g~~~~~~v~  204 (204)
                      ++..++.+.+++|+.+|++|+++.|.||
T Consensus       295 e~~~~~~~~~~~ni~~~~~g~~~~~~v~  322 (333)
T PRK13243        295 EAREGMAELVAENLIAFKRGEVPPTLVN  322 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCcccC
Confidence            9999999999999999999999999886

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=100.00  E-value=1.3e-56  Score=383.07  Aligned_cols=197  Identities=35%  Similarity=0.556  Sum_probs=178.7

Q ss_pred             CCCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCC-
Q 045521            1 VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEM-   73 (204)
Q Consensus         1 t~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~-   73 (204)
                      +++++++++++|+||||++.|+|+|+||+++|+++||.|+|+||+++.+||||++++||+++|+      .+++|.|.+ 
T Consensus        51 ~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~  130 (311)
T PRK08410         51 VVIDKEVLSQLPNLKLICITATGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSES  130 (311)
T ss_pred             CCCCHHHHhhCCCCeEEEEcccccccccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcC
Confidence            3689999999999999999999999999999999999999999999999999999999999999      578899974 


Q ss_pred             C-C----ccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC-CCCC------------------------
Q 045521           74 G-Y----KLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN-TKYK------------------------  123 (204)
Q Consensus        74 ~-~----~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~-~~~~------------------------  123 (204)
                      . .    ..+.+|+||||||||+|+||+++|+++++|||+|++|+|+.... ..+.                        
T Consensus       131 ~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~T  210 (311)
T PRK08410        131 PIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKT  210 (311)
T ss_pred             CCccccCccccccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCchh
Confidence            1 1    12468999999999999999999999999999999999865321 1110                        


Q ss_pred             -----------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCC-CcCCC---CceEEcccCCCCcH
Q 045521          124 -----------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPE-ELFGL---ENVVLLPHAASGTE  176 (204)
Q Consensus       124 -----------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~-~l~~~---~nvilTPH~a~~t~  176 (204)
                                             |++|||+||++||++|+|+ |+||||++||++++ |||++   |||++|||+|+.|.
T Consensus       211 ~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~  289 (311)
T PRK08410        211 KNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASK  289 (311)
T ss_pred             hcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCH
Confidence                                   9999999999999999999 99999999998765 89986   89999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCC
Q 045521          177 ETRKATADIVIENLEACFLNKP  198 (204)
Q Consensus       177 ~~~~~~~~~~~~nl~~~~~g~~  198 (204)
                      ++..++.+.+++|+.+|++|++
T Consensus       290 e~~~~~~~~~~~nl~~~~~g~~  311 (311)
T PRK08410        290 EARKTLIEKVKENIKDFLEGGK  311 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999863

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=2.9e-56  Score=393.22  Aligned_cols=204  Identities=28%  Similarity=0.396  Sum_probs=186.9

Q ss_pred             CCCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCCC
Q 045521            1 VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEMG   74 (204)
Q Consensus         1 t~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~~   74 (204)
                      +++++++++++|+||||+++|+|+|+||+++|+++||.|+|+||+++.+||||++++||++.|+      .+++|.|.+.
T Consensus        63 ~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~  142 (409)
T PRK11790         63 TQLTEEVLAAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKS  142 (409)
T ss_pred             CCCCHHHHhhCCCCeEEEECceecccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCccccc
Confidence            3689999999999999999999999999999999999999999999999999999999999999      4678999853


Q ss_pred             CccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCC-------CCC------------------------
Q 045521           75 YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNT-------KYK------------------------  123 (204)
Q Consensus        75 ~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~-------~~~------------------------  123 (204)
                      ...+.+|+||||||||+|+||+++|+++++|||+|++|+++.....       ++.                        
T Consensus       143 ~~~~~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~  222 (409)
T PRK11790        143 AAGSFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIG  222 (409)
T ss_pred             ccCcccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccC
Confidence            2346899999999999999999999999999999999998643211       000                        


Q ss_pred             ------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCC-----CCcCCCCceEEcccCCCCcHHHHH
Q 045521          124 ------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVP-----EELFGLENVVLLPHAASGTEETRK  180 (204)
Q Consensus       124 ------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-----~~l~~~~nvilTPH~a~~t~~~~~  180 (204)
                                        |++||++||++||++|+|+||+||||++||++.     +|||++|||++|||+|++|.++..
T Consensus       223 ~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~ea~~  302 (409)
T PRK11790        223 AEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQEAQE  302 (409)
T ss_pred             HHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHHHHHH
Confidence                              999999999999999999999999999999875     489999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCCCCCCCC
Q 045521          181 ATADIVIENLEACFLNKPLLTPVV  204 (204)
Q Consensus       181 ~~~~~~~~nl~~~~~g~~~~~~v~  204 (204)
                      ++.+.+++|+.+|++|+++.+.||
T Consensus       303 ~~~~~~~~nl~~~~~~~~~~~~vn  326 (409)
T PRK11790        303 NIGLEVAGKLVKYSDNGSTLSAVN  326 (409)
T ss_pred             HHHHHHHHHHHHHHcCCCcCccee
Confidence            999999999999999999988876

>PRK06932 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=6.1e-56  Score=379.36  Aligned_cols=198  Identities=29%  Similarity=0.452  Sum_probs=178.4

Q ss_pred             CCCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCCC
Q 045521            1 VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEMG   74 (204)
Q Consensus         1 t~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~~   74 (204)
                      +++++++++++|+||||++.++|+|+||+++|+++||.|+|+||+++.+||||++++||++.|+      .++++.|.+.
T Consensus        53 ~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l~l~~~R~~~~~~~~~~~~~W~~~  132 (314)
T PRK06932         53 VLFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALKHSLMGWYRDQLSDRWATC  132 (314)
T ss_pred             CCCCHHHHhhCcCCeEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHHHHHHHHhChHHHHHHHHcCCCCcC
Confidence            3689999999999999999999999999999999999999999999999999999999999999      4678899741


Q ss_pred             --C----ccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCC--CCC-----------------------
Q 045521           75 --Y----KLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNT--KYK-----------------------  123 (204)
Q Consensus        75 --~----~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~--~~~-----------------------  123 (204)
                        +    ..+.+|+||||||||+|+||+++|+++++|||+|+|++++.....  .+.                       
T Consensus       133 ~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~~~~~~~~l~ell~~sDiv~l~~Plt~~T~  212 (314)
T PRK06932        133 KQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASVCREGYTPFEEVLKQADIVTLHCPLTETTQ  212 (314)
T ss_pred             ccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccccccccCCHHHHHHhCCEEEEcCCCChHHh
Confidence              1    124689999999999999999999999999999999997642110  111                       


Q ss_pred             ----------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCC-CcC----CCCceEEcccCCCCcH
Q 045521          124 ----------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPE-ELF----GLENVVLLPHAASGTE  176 (204)
Q Consensus       124 ----------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~-~l~----~~~nvilTPH~a~~t~  176 (204)
                                            |++||++||++||++|+|+||+||||++||++.+ |||    ++|||++|||+|+.|.
T Consensus       213 ~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~~~~pl~~~~~~~pnvilTPHia~~t~  292 (314)
T PRK06932        213 NLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITPHIAWASD  292 (314)
T ss_pred             cccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCCCCCChhhHhhcCCCCEEECCccccCcH
Confidence                                  9999999999999999999999999999998764 898    5899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCC
Q 045521          177 ETRKATADIVIENLEACFLNKP  198 (204)
Q Consensus       177 ~~~~~~~~~~~~nl~~~~~g~~  198 (204)
                      ++.+++.+.+++|+.+|++|++
T Consensus       293 e~~~~~~~~~~~ni~~~~~~g~  314 (314)
T PRK06932        293 SAVTTLVNKVAQNIEEFVQQGK  314 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999998763

>PLN03139 formate dehydrogenase; Provisional

Probab=100.00  E-value=1.4e-55  Score=384.51  Aligned_cols=198  Identities=25%  Similarity=0.344  Sum_probs=181.5

Q ss_pred             CCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCC-C
Q 045521            2 GADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEM-G   74 (204)
Q Consensus         2 ~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~-~   74 (204)
                      ++++++++++|+||||++.|+|+||||+++|+++||.|+|++|+++.+||||++++||++.|+      .+++|.|.. .
T Consensus       110 ~~~~e~l~~ap~LK~I~~~g~G~D~iDl~aa~~~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~  189 (386)
T PLN03139        110 YVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAG  189 (386)
T ss_pred             CCCHHHHhhCCCccEEEECCccccccCHHHHHHCCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCcccc
Confidence            589999999999999999999999999999999999999999999999999999999999999      467899974 1


Q ss_pred             -CccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC-----CC---C-C---------------------
Q 045521           75 -YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN-----TK---Y-K---------------------  123 (204)
Q Consensus        75 -~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~-----~~---~-~---------------------  123 (204)
                       ...+.+|.||||||||+|+||+++|+++++|||+|++|+|+..+.     ..   + .                     
T Consensus       190 ~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T  269 (386)
T PLN03139        190 IAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKT  269 (386)
T ss_pred             ccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHH
Confidence             234679999999999999999999999999999999999874221     00   0 0                     


Q ss_pred             -----------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCC-CcCCCCceEEcccCCCCcHHHH
Q 045521          124 -----------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPE-ELFGLENVVLLPHAASGTEETR  179 (204)
Q Consensus       124 -----------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~-~l~~~~nvilTPH~a~~t~~~~  179 (204)
                                             |++||++||++||++|+|+||+||||++||++.+ |||++|||++|||+||.|.+++
T Consensus       270 ~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~  349 (386)
T PLN03139        270 RGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQ  349 (386)
T ss_pred             HHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHH
Confidence                                   9999999999999999999999999999998765 9999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCC
Q 045521          180 KATADIVIENLEACFLNKPL  199 (204)
Q Consensus       180 ~~~~~~~~~nl~~~~~g~~~  199 (204)
                      .++.+.+++||.+|++|+++
T Consensus       350 ~r~~~~~~~nl~~~~~G~~~  369 (386)
T PLN03139        350 LRYAAGVKDMLDRYFKGEDF  369 (386)
T ss_pred             HHHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999864

>PRK07574 formate dehydrogenase; Provisional

Probab=100.00  E-value=1.6e-55  Score=384.29  Aligned_cols=201  Identities=27%  Similarity=0.379  Sum_probs=184.5

Q ss_pred             CCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCC-C
Q 045521            2 GADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEM-G   74 (204)
Q Consensus         2 ~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~-~   74 (204)
                      ++++++++++|+||||+++|+|+|++|+++|+++||.|+|++++++.+||||++++||+++|+      .+++|.|.+ .
T Consensus       103 ~~~~e~l~~~p~LK~I~~~g~G~D~id~~aa~~~gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~  182 (385)
T PRK07574        103 YLTAERIAKAPNLKLAITAGIGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIAD  182 (385)
T ss_pred             CCCHHHHhhCCCCcEEEECCcccccccHHHHHHCCcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCccc
Confidence            589999999999999999999999999999999999999999999999999999999999999      467899985 2


Q ss_pred             -CccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC-----C--C-CC----------------------
Q 045521           75 -YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN-----T--K-YK----------------------  123 (204)
Q Consensus        75 -~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~-----~--~-~~----------------------  123 (204)
                       ...+.+|+||||||||+|+||+++|++|++|||+|++|+|+..+.     .  . +.                      
T Consensus       183 ~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T  262 (385)
T PRK07574        183 CVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPET  262 (385)
T ss_pred             ccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHH
Confidence             134678999999999999999999999999999999999875211     0  0 01                      


Q ss_pred             -----------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCC-CcCCCCceEEcccCCCCcHHHH
Q 045521          124 -----------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPE-ELFGLENVVLLPHAASGTEETR  179 (204)
Q Consensus       124 -----------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~-~l~~~~nvilTPH~a~~t~~~~  179 (204)
                                             |++||++||++||++|+|+||+||||++||++.+ |||++|||++|||+|+.|.+++
T Consensus       263 ~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~  342 (385)
T PRK07574        263 EHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQ  342 (385)
T ss_pred             HHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHH
Confidence                                   9999999999999999999999999999998765 9999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCC
Q 045521          180 KATADIVIENLEACFLNKPLLTP  202 (204)
Q Consensus       180 ~~~~~~~~~nl~~~~~g~~~~~~  202 (204)
                      +++.+.+++||++|++|+++.|+
T Consensus       343 ~~~~~~~~~ni~~~~~G~~~~~~  365 (385)
T PRK07574        343 ARYAAGTREILECFFEGRPIRDE  365 (385)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCC
Confidence            99999999999999999998875

>PLN02306 hydroxypyruvate reductase

Probab=100.00  E-value=5.8e-55  Score=381.46  Aligned_cols=204  Identities=30%  Similarity=0.426  Sum_probs=185.0

Q ss_pred             CCCCHHHHhcCCC--ceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCC
Q 045521            1 VGADAELIDSLPK--LEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGE   72 (204)
Q Consensus         1 t~i~~~~l~~~~~--Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~   72 (204)
                      +++++++++++|+  ||+|+++++|+||||+++|+++||.|+|+||+++.+||||++++||++.|+      .+++|.|.
T Consensus        72 ~~i~~~~l~~~~~l~lk~I~~~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~  151 (386)
T PLN02306         72 EDWGETLFSALSKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYE  151 (386)
T ss_pred             CCcCHHHHHhCCcCCceEEEECCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCc
Confidence            3689999999996  699999999999999999999999999999999999999999999999999      36778885


Q ss_pred             C---CCccccccCCCEEEEEeCChHHHHHHHHHh-hcCCEEEEEcCCCCCC-------------------------CCCC
Q 045521           73 M---GYKLTTKISGRSVGIIGLGRIGMAVAKRAE-AFGCFISYRSRAEKPN-------------------------TKYK  123 (204)
Q Consensus        73 ~---~~~~~~~l~g~tvGIvG~G~IG~~va~~~~-~fg~~V~~~~r~~~~~-------------------------~~~~  123 (204)
                      +   ....+.+|+||||||||+|+||+++|++++ +|||+|++||++.+..                         .++.
T Consensus       152 ~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~  231 (386)
T PLN02306        152 GWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSME  231 (386)
T ss_pred             cccccccCCcCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHH
Confidence            3   122467899999999999999999999985 9999999999865310                         0100


Q ss_pred             ------------------------------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCcCC
Q 045521          124 ------------------------------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFG  161 (204)
Q Consensus       124 ------------------------------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l~~  161 (204)
                                                                |++|||+||++||++|+|+||+||||++||++++|||+
T Consensus       232 ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~~~~L~~  311 (386)
T PLN02306        232 EVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPGLAD  311 (386)
T ss_pred             HHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCCcchHhh
Confidence                                                      99999999999999999999999999999987779999


Q ss_pred             CCceEEcccCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 045521          162 LENVVLLPHAASGTEETRKATADIVIENLEACFLNKPLLTPVV  204 (204)
Q Consensus       162 ~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  204 (204)
                      +|||++|||+|+.|.++.+++.+.+++|+.+|++|+++.|.||
T Consensus       312 ~pNVilTPHiag~T~e~~~~~~~~~~~ni~~~~~g~~~~~~~~  354 (386)
T PLN02306        312 MKNAVVVPHIASASKWTREGMATLAALNVLGKLKGYPVWGDPN  354 (386)
T ss_pred             CCCEEECCccccCcHHHHHHHHHHHHHHHHHHHcCCCCccccc
Confidence            9999999999999999999999999999999999999999886

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=100.00  E-value=5.2e-55  Score=396.05  Aligned_cols=204  Identities=34%  Similarity=0.524  Sum_probs=187.6

Q ss_pred             CCCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCCC
Q 045521            1 VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEMG   74 (204)
Q Consensus         1 t~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~~   74 (204)
                      +++++++++++|+||||+++|+|+|++|+++|+++||.|+|+||+++.+||||++++||+++|+      .+++|.|.+.
T Consensus        50 ~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~  129 (525)
T TIGR01327        50 TKVTEEVIAAAPKLKVIGRAGVGVDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRK  129 (525)
T ss_pred             CCcCHHHHhhCCCceEEEECCcccchhcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCcccc
Confidence            4789999999999999999999999999999999999999999999999999999999999999      4678999853


Q ss_pred             CccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC----C------CCC---------------------
Q 045521           75 YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN----T------KYK---------------------  123 (204)
Q Consensus        75 ~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~----~------~~~---------------------  123 (204)
                      ...+.+|+||||||||+|+||+++|++|++|||+|++|+|+..+.    .      ...                     
T Consensus       130 ~~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~  209 (525)
T TIGR01327       130 AFMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRG  209 (525)
T ss_pred             ccCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhcc
Confidence            335789999999999999999999999999999999999853211    0      000                     


Q ss_pred             ---------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCcCCCCceEEcccCCCCcHHHHHHH
Q 045521          124 ---------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKAT  182 (204)
Q Consensus       124 ---------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l~~~~nvilTPH~a~~t~~~~~~~  182 (204)
                                           |++||++||++||++|+|+||+||||++||++++|||++|||++|||+|+.|.+++.++
T Consensus       210 li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi~TPHia~~t~e~~~~~  289 (525)
T TIGR01327       210 LIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVIATPHLGASTREAQENV  289 (525)
T ss_pred             CcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeEECCCccccHHHHHHHH
Confidence                                 99999999999999999999999999999987779999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCCCCC
Q 045521          183 ADIVIENLEACFLNKPLLTPVV  204 (204)
Q Consensus       183 ~~~~~~nl~~~~~g~~~~~~v~  204 (204)
                      .+.+++|+.+|++|+++.+.||
T Consensus       290 ~~~~~~ni~~~~~g~~~~~~vn  311 (525)
T TIGR01327       290 ATQVAEQVLDALKGLPVPNAVN  311 (525)
T ss_pred             HHHHHHHHHHHHcCCCCCceee
Confidence            9999999999999999998876

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.3e-54  Score=393.60  Aligned_cols=204  Identities=33%  Similarity=0.506  Sum_probs=187.7

Q ss_pred             CCCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCCC
Q 045521            1 VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEMG   74 (204)
Q Consensus         1 t~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~~   74 (204)
                      +++++++++++|+||||+++|+|+|++|+++|+++||.|+|+|++++.+||||++++||+++|+      .+++|.|.+.
T Consensus        52 ~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~  131 (526)
T PRK13581         52 TKVTAEVLEAAKNLKVIGRAGVGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERK  131 (526)
T ss_pred             CCCCHHHHhhCCCCeEEEECCcccccccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCcc
Confidence            4689999999999999999999999999999999999999999999999999999999999999      4678999853


Q ss_pred             CccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCC----CC---C------------------------
Q 045521           75 YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNT----KY---K------------------------  123 (204)
Q Consensus        75 ~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~----~~---~------------------------  123 (204)
                      ...+.+|.||||||||+|+||+.+|+++++|||+|++|+|+..+..    .+   .                        
T Consensus       132 ~~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~l  211 (526)
T PRK13581        132 KFMGVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPERAAQLGVELVSLDELLARADFITLHTPLTPETRGL  211 (526)
T ss_pred             CccccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcC
Confidence            2357799999999999999999999999999999999998542110    00   0                        


Q ss_pred             --------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCcCCCCceEEcccCCCCcHHHHHHHH
Q 045521          124 --------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATA  183 (204)
Q Consensus       124 --------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l~~~~nvilTPH~a~~t~~~~~~~~  183 (204)
                                          |++||++||++||++|+|+||+||||++||++++|||++|||++|||+|+.|.++++++.
T Consensus       212 i~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~  291 (526)
T PRK13581        212 IGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVVVTPHLGASTAEAQENVA  291 (526)
T ss_pred             cCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCeeEcCccccchHHHHHHHH
Confidence                                999999999999999999999999999999887799999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCCCCC
Q 045521          184 DIVIENLEACFLNKPLLTPVV  204 (204)
Q Consensus       184 ~~~~~nl~~~~~g~~~~~~v~  204 (204)
                      +.+++|+.+|++|+++.|.||
T Consensus       292 ~~~~~ni~~~~~g~~~~~~vn  312 (526)
T PRK13581        292 IQVAEQVIDALRGGPVPNAVN  312 (526)
T ss_pred             HHHHHHHHHHHcCCCcCceee
Confidence            999999999999999999886

>PLN02928 oxidoreductase family protein

Probab=100.00  E-value=5.1e-54  Score=371.87  Aligned_cols=199  Identities=26%  Similarity=0.403  Sum_probs=181.1

Q ss_pred             CCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCC---CchhHHHHHHHHHHHHHhh------HHHhcCCC
Q 045521            2 GADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDV---LTDDVADAAIGLTLAVLRR------FVRSEDGE   72 (204)
Q Consensus         2 ~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~---~~~~vAE~~l~~~L~~~R~------~~~~~~w~   72 (204)
                      ++++++++.+|+||||++.++|+|++|++++.++||.|+|+|++   ++.+||||+++++|+++|+      .++++.|.
T Consensus        71 ~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~  150 (347)
T PLN02928         71 RLDADIIARASQMKLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLG  150 (347)
T ss_pred             CCCHHHHhcCCCceEEEECCcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCcc
Confidence            58899999999999999999999999999999999999999986   7899999999999999999      46778897


Q ss_pred             CCCccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC-------------------CCCC----------
Q 045521           73 MGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN-------------------TKYK----------  123 (204)
Q Consensus        73 ~~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~-------------------~~~~----------  123 (204)
                      +  +.+.+|+||||||||+|+||+++|+++++|||+|++|+|+..+.                   ..+.          
T Consensus       151 ~--~~~~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aD  228 (347)
T PLN02928        151 E--PIGDTLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEAD  228 (347)
T ss_pred             c--ccccCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCC
Confidence            4  34678999999999999999999999999999999999863210                   0010          


Q ss_pred             -----------------------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCC-CcCCCCceEE
Q 045521          124 -----------------------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPE-ELFGLENVVL  167 (204)
Q Consensus       124 -----------------------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~-~l~~~~nvil  167 (204)
                                                         |++||++||++||++|+|+||+||||++||++++ |||++|||++
T Consensus       229 iVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nvii  308 (347)
T PLN02928        229 IVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVII  308 (347)
T ss_pred             EEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEE
Confidence                                               9999999999999999999999999999998764 9999999999


Q ss_pred             cccCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 045521          168 LPHAASGTEETRKATADIVIENLEACFLNKPLLTP  202 (204)
Q Consensus       168 TPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~  202 (204)
                      |||+|+.|.++++++.+.+++|+.+|++|+++.+.
T Consensus       309 TPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~  343 (347)
T PLN02928        309 TPHVAGVTEYSYRSMGKIVGDAALQLHAGRPLTGI  343 (347)
T ss_pred             CCcCCCChHHHHHHHHHHHHHHHHHHHCCCCCCce
Confidence            99999999999999999999999999999987653

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=100.00  E-value=4.4e-53  Score=363.83  Aligned_cols=204  Identities=24%  Similarity=0.362  Sum_probs=182.8

Q ss_pred             CCCCHHHHhcCC--CceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCC
Q 045521            1 VGADAELIDSLP--KLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGE   72 (204)
Q Consensus         1 t~i~~~~l~~~~--~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~   72 (204)
                      +++++++++++|  +||+|++.++|+|+||+++|+++||.|+|+|++++++||||++++||++.|+      .+++|.|.
T Consensus        55 ~~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~  134 (330)
T PRK12480         55 GKLENDVYPKLESYGIKQIAQRTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFT  134 (330)
T ss_pred             CCCCHHHHHhhhhcCceEEEecccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcc
Confidence            378999999998  8999999999999999999999999999999999999999999999999999      35667653


Q ss_pred             C-CCccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCC---C--C-----------------------
Q 045521           73 M-GYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTK---Y--K-----------------------  123 (204)
Q Consensus        73 ~-~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~---~--~-----------------------  123 (204)
                      . ....+.+|+|+||||||+|+||+.+|+++++|||+|++|+++......   +  .                       
T Consensus       135 w~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t~~t~~  214 (330)
T PRK12480        135 WQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANKESYH  214 (330)
T ss_pred             cccccCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCcHHHHH
Confidence            1 112467899999999999999999999999999999999987532110   0  0                       


Q ss_pred             ---------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCC----------C----CCcCCCCceEEc
Q 045521          124 ---------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQV----------P----EELFGLENVVLL  168 (204)
Q Consensus       124 ---------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~----------~----~~l~~~~nvilT  168 (204)
                                           |++||++||++||++|+|+||+||||++||+.          +    +|||++|||++|
T Consensus       215 li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilT  294 (330)
T PRK12480        215 LFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVT  294 (330)
T ss_pred             HHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEEC
Confidence                                 99999999999999999999999999999962          1    269999999999


Q ss_pred             ccCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 045521          169 PHAASGTEETRKATADIVIENLEACFLNKPLLTPVV  204 (204)
Q Consensus       169 PH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  204 (204)
                      ||+|+.|.++++++.+.+++|+.+|++|+++.++||
T Consensus       295 PHia~~t~~~~~~~~~~~~~n~~~~~~~~~~~~~~~  330 (330)
T PRK12480        295 PHIAFFSDEAVQNLVEGGLNAALSVINTGTCETRLN  330 (330)
T ss_pred             CcccccHHHHHHHHHHHHHHHHHHHHhCCCCcccCC
Confidence            999999999999999999999999999999999986

>PRK08605 D-lactate dehydrogenase; Validated

Probab=100.00  E-value=1.6e-51  Score=354.76  Aligned_cols=204  Identities=25%  Similarity=0.334  Sum_probs=182.4

Q ss_pred             CCCCHHHHhcCCC--ceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCC
Q 045521            1 VGADAELIDSLPK--LEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGE   72 (204)
Q Consensus         1 t~i~~~~l~~~~~--Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~   72 (204)
                      +++++++++++|+  ||+|++.|+|+|++|+++|+++||.|+|+||+++.+||||++++||++.|+      .++++.|.
T Consensus        55 ~~~~~~~l~~~~~~~lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~  134 (332)
T PRK08605         55 IPLSEAIYKLLNELGIKQIAQRSAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFR  134 (332)
T ss_pred             CCCCHHHHHhhhhcCceEEEEcccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcc
Confidence            4789999999997  999999999999999999999999999999999999999999999999999      36677764


Q ss_pred             C-CCccccccCCCEEEEEeCChHHHHHHHHH-hhcCCEEEEEcCCCCCC--------CCCC-------------------
Q 045521           73 M-GYKLTTKISGRSVGIIGLGRIGMAVAKRA-EAFGCFISYRSRAEKPN--------TKYK-------------------  123 (204)
Q Consensus        73 ~-~~~~~~~l~g~tvGIvG~G~IG~~va~~~-~~fg~~V~~~~r~~~~~--------~~~~-------------------  123 (204)
                      . ....+++|+|+||||||+|+||+++|+++ ++|||+|++++++....        .+..                   
T Consensus       135 ~~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvIvl~lP~t~~t  214 (332)
T PRK08605        135 WEPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAATYVDYKDTIEEAVEGADIVTLHMPATKYN  214 (332)
T ss_pred             cccccccceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHHhhccccCCHHHHHHhCCEEEEeCCCCcch
Confidence            1 11246799999999999999999999999 89999999999865321        0000                   


Q ss_pred             -----------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCC--CCC------------CcCCCCceE
Q 045521          124 -----------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQ--VPE------------ELFGLENVV  166 (204)
Q Consensus       124 -----------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~--~~~------------~l~~~~nvi  166 (204)
                                             |.++|+++|+++|++|+|+||+||||+.||.  +.+            +||++|||+
T Consensus       215 ~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvi  294 (332)
T PRK08605        215 HYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVI  294 (332)
T ss_pred             hhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEE
Confidence                                   9999999999999999999999999999982  222            499999999


Q ss_pred             EcccCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 045521          167 LLPHAASGTEETRKATADIVIENLEACFLNKPLLTPVV  204 (204)
Q Consensus       167 lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  204 (204)
                      +|||+|++|.++.+++...+++|+.+|++|++..+.||
T Consensus       295 lTPHia~~t~e~~~~~~~~~~~n~~~~~~g~~~~~~~~  332 (332)
T PRK08605        295 LTPHIAFYTDAAVKNLIVDALDATLEVLQTGTTRLRVN  332 (332)
T ss_pred             ECCcccccHHHHHHHHHHHHHHHHHHHHcCCCCCCCcC
Confidence            99999999999999999999999999999999999886

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=100.00  E-value=3.3e-51  Score=342.76  Aligned_cols=202  Identities=31%  Similarity=0.456  Sum_probs=183.1

Q ss_pred             CCCCHHHHh-cCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCC
Q 045521            1 VGADAELID-SLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEM   73 (204)
Q Consensus         1 t~i~~~~l~-~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~   73 (204)
                      |++++++++ ...+||+|.+.++|+||+|++++.++||.|.|+|.+|+.++||+++++++++.|+      .+++|+|.+
T Consensus        57 tkvtadvl~aa~~~lkvVgrag~G~dNVDL~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr  136 (406)
T KOG0068|consen   57 TKVTADVLEAAAGGLKVVGRAGIGVDNVDLKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNR  136 (406)
T ss_pred             CeecHHHHHhhcCCeEEEEecccCccccChhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceee
Confidence            789999999 5668999999999999999999999999999999999999999999999999999      578999997


Q ss_pred             CCccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCC------------------CCC------------
Q 045521           74 GYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNT------------------KYK------------  123 (204)
Q Consensus        74 ~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~------------------~~~------------  123 (204)
                      ....|.+|+|||+||+|+|+||+++|+++++|||+|++||+......                  +|.            
T Consensus       137 ~~~~G~el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~  216 (406)
T KOG0068|consen  137 VKYLGWELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALAEAFGVQLVSLEEILPKADFITLHVPLTPSTEK  216 (406)
T ss_pred             cceeeeEEeccEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHHHhccceeeeHHHHHhhcCEEEEccCCCcchhh
Confidence            44578999999999999999999999999999999999987543210                  110            


Q ss_pred             ---------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCC---CCCcCCCCceEEcccCCCCcHHHH
Q 045521          124 ---------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQV---PEELFGLENVVLLPHAASGTEETR  179 (204)
Q Consensus       124 ---------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~---~~~l~~~~nvilTPH~a~~t~~~~  179 (204)
                                           |.+||++||++||++|+++|||+|||+.||..   .+.|.++|||++|||+|++|.|++
T Consensus       217 lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq  296 (406)
T KOG0068|consen  217 LLNDETFAKMKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQ  296 (406)
T ss_pred             ccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHH
Confidence                                 99999999999999999999999999999976   358999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCCC
Q 045521          180 KATADIVIENLEACFLNKPLLTPV  203 (204)
Q Consensus       180 ~~~~~~~~~nl~~~~~g~~~~~~v  203 (204)
                      .+....+++++.+|++| .....|
T Consensus       297 ~~iaievaea~~~~~~~-~~~g~V  319 (406)
T KOG0068|consen  297 SRIAIEVAEAVSDYING-NSAGSV  319 (406)
T ss_pred             HHHHHHHHHHHHHHhcc-Ccccee
Confidence            99999999999999998 433333

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=100.00  E-value=9e-51  Score=345.27  Aligned_cols=202  Identities=51%  Similarity=0.822  Sum_probs=183.8

Q ss_pred             CCHHHHhcC-CCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCC--
Q 045521            3 ADAELIDSL-PKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEM--   73 (204)
Q Consensus         3 i~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~--   73 (204)
                      ++.+++.+. |++|+|.++|+|+||||+++|++|||+|+|+|+.+.++|||++++++|.++|+      ++++|.|..  
T Consensus        73 ~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~  152 (336)
T KOG0069|consen   73 FTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSLLLALLRRFSEGNEMVRNGGWGWAG  152 (336)
T ss_pred             HhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccccC
Confidence            355666665 99999999999999999999999999999999999999999999999999999      678899852  


Q ss_pred             CCccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCC----------CC--------------------
Q 045521           74 GYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTK----------YK--------------------  123 (204)
Q Consensus        74 ~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~----------~~--------------------  123 (204)
                      .++.+..+.||||||+|+|+||+++|++|++|||.+.|++|++.+...          +.                    
T Consensus       153 ~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~ivv~~pLt~~T~  232 (336)
T KOG0069|consen  153 GWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIVVNCPLTKETR  232 (336)
T ss_pred             CccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEEEecCCCHHHH
Confidence            456688999999999999999999999999999999999997653211          00                    


Q ss_pred             ----------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCcCCCCceEEcccCCCCcHHHHHH
Q 045521          124 ----------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKA  181 (204)
Q Consensus       124 ----------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l~~~~nvilTPH~a~~t~~~~~~  181 (204)
                                            |.++|+++|++||++|+|.+++||||++||.+++||++++|+++|||+|+.|.+++.+
T Consensus       233 ~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP~~~~~l~~~dnvv~~PHigs~t~~t~~~  312 (336)
T KOG0069|consen  233 HLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEPPVDHPLLTLDNVVILPHIGSATLETREK  312 (336)
T ss_pred             HHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCCCCCcchhcccceeEecccccCcHHHHHH
Confidence                                  9999999999999999999999999999996667999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCCCC
Q 045521          182 TADIVIENLEACFLNKPLLTPVV  204 (204)
Q Consensus       182 ~~~~~~~nl~~~~~g~~~~~~v~  204 (204)
                      |...++.|+.++++|+++.++++
T Consensus       313 m~~~v~~n~~~~~~g~~~~~~~~  335 (336)
T KOG0069|consen  313 MAEIVLNNLLAFFSGKPLLTPVL  335 (336)
T ss_pred             HHHHHHHHHHHHHccCCCCCcCC
Confidence            99999999999999999888764

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=100.00  E-value=5.3e-50  Score=342.24  Aligned_cols=196  Identities=23%  Similarity=0.313  Sum_probs=170.7

Q ss_pred             CHHHHhcCCCceEEEECCCCCCCCChhh-----HhhCCcEEEeCCC-CCchhHHHHHHHHHHHHHhh------HHHhcCC
Q 045521            4 DAELIDSLPKLEIVATCSAGLDKIDLVK-----CKEKGIQVTNTPD-VLTDDVADAAIGLTLAVLRR------FVRSEDG   71 (204)
Q Consensus         4 ~~~~l~~~~~Lk~I~~~~~G~d~id~~~-----~~~~gI~v~n~~~-~~~~~vAE~~l~~~L~~~R~------~~~~~~w   71 (204)
                      +.++++ .|+||||++.|+|+|++|.+.     +.++||.|+|+++ .++.+||||++++||++.|+      .++++.|
T Consensus        48 ~~~~l~-~~~Lk~I~~~~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w  126 (312)
T PRK15469         48 PVEMLA-GRDLKAVFALGAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHW  126 (312)
T ss_pred             ChHHhc-cCCceEEEEcccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHcChHHHHHHHHhCCc
Confidence            456675 589999999999999998322     4458999999864 68999999999999999999      3567899


Q ss_pred             CCCCccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCC------CC----------------------
Q 045521           72 EMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTK------YK----------------------  123 (204)
Q Consensus        72 ~~~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~------~~----------------------  123 (204)
                      .+  ....+++||||||||+|+||+++|+++++|||+|++|+++.+....      +.                      
T Consensus       127 ~~--~~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T  204 (312)
T PRK15469        127 QP--LPEYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNTPET  204 (312)
T ss_pred             CC--CCCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCCCCHHH
Confidence            74  1245799999999999999999999999999999999986543110      00                      


Q ss_pred             -----------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCC-CcCCCCceEEcccCCCCcHHHH
Q 045521          124 -----------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPE-ELFGLENVVLLPHAASGTEETR  179 (204)
Q Consensus       124 -----------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~-~l~~~~nvilTPH~a~~t~~~~  179 (204)
                                             |++||++||++||++|+|+||+||||++||++.+ |||++|||++|||+|+.|.+. 
T Consensus       205 ~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~nvi~TPHiag~t~~~-  283 (312)
T PRK15469        205 VGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHVAAVTRPA-  283 (312)
T ss_pred             HHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCCCeEECCcCCCCcCHH-
Confidence                                   9999999999999999999999999999998865 999999999999999999874 


Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCCCC
Q 045521          180 KATADIVIENLEACFLNKPLLTPVV  204 (204)
Q Consensus       180 ~~~~~~~~~nl~~~~~g~~~~~~v~  204 (204)
                       ++...+.+|+++|++|+++.|.||
T Consensus       284 -~~~~~~~~n~~~~~~g~~~~~~V~  307 (312)
T PRK15469        284 -EAVEYISRTIAQLEKGERVCGQVD  307 (312)
T ss_pred             -HHHHHHHHHHHHHHcCCCCcccCC
Confidence             688999999999999999999986

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=100.00  E-value=9.9e-49  Score=340.50  Aligned_cols=181  Identities=27%  Similarity=0.374  Sum_probs=165.0

Q ss_pred             CCCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhhHHHhcCCCCCCccccc
Q 045521            1 VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTK   80 (204)
Q Consensus         1 t~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~w~~~~~~~~~   80 (204)
                      |++++++++ .|+||||+++++|+||||+++++++||.|+|+||+++.+||||++++||++.|+            .+.+
T Consensus        47 t~v~~~ll~-~~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~------------~g~~  113 (378)
T PRK15438         47 TKVNESLLA-GKPIKFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAER------------DGFS  113 (378)
T ss_pred             CCCCHHHhc-CCCCeEEEECcccccccCHHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhcc------------CCCC
Confidence            578999996 699999999999999999999999999999999999999999999999999985            2457


Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCC---CCC----------------------------------
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNT---KYK----------------------------------  123 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~---~~~----------------------------------  123 (204)
                      |+||||||||+|+||+++|+++++|||+|++||+......   .+.                                  
T Consensus       114 L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~  193 (378)
T PRK15438        114 LHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKL  193 (378)
T ss_pred             cCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHH
Confidence            9999999999999999999999999999999997532110   111                                  


Q ss_pred             ---------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCcCCCCceEEcccCCCCcHHHHHHHHHHHHH
Q 045521          124 ---------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATADIVIE  188 (204)
Q Consensus       124 ---------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l~~~~nvilTPH~a~~t~~~~~~~~~~~~~  188 (204)
                                     |++||++||+++|++|++.||+||||++||.++++||..++ ++|||+||+|.++..++..++++
T Consensus       194 l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~~~~~Ll~~~~-i~TPHiAg~s~e~~~~~~~~~~~  272 (378)
T PRK15438        194 IRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVD-IGTPHIAGYTLEGKARGTTQVFE  272 (378)
T ss_pred             HhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCCCchhhhhcCC-EECCccCcCcHHHHHHHHHHHHH
Confidence                           99999999999999999999999999999987778987665 99999999999999999999999


Q ss_pred             HHHHHHc
Q 045521          189 NLEACFL  195 (204)
Q Consensus       189 nl~~~~~  195 (204)
                      |+.+|+.
T Consensus       273 ~l~~~~~  279 (378)
T PRK15438        273 AYSKFIG  279 (378)
T ss_pred             HHHHHHc
Confidence            9999994

>PRK06436 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.5e-48  Score=331.84  Aligned_cols=189  Identities=28%  Similarity=0.379  Sum_probs=166.8

Q ss_pred             cCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCCCCccccccCC
Q 045521           10 SLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEMGYKLTTKISG   83 (204)
Q Consensus        10 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~~~~~~~~l~g   83 (204)
                      .+|+||||++.++|+|++|+++|++++|.++|. |+++.+||||++++||++.|+      .+++|.|.+.  .+.+|+|
T Consensus        46 ~~~~Lk~I~~~~aG~D~id~~~~~~~~i~~~~~-g~~~~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~--~~~~L~g  122 (303)
T PRK06436         46 PGKKTKMIQSLSAGVDHIDVSGIPENVVLCSNA-GAYSISVAEHAFALLLAWAKNICENNYNMKNGNFKQS--PTKLLYN  122 (303)
T ss_pred             CCCCeEEEEECCcccCcccHHHHHhCCeEEEcC-CCCcHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCCC--CCCCCCC
Confidence            458999999999999999999999888877774 889999999999999999999      5678999852  3578999


Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC-C-C-CC-------------------------------------
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN-T-K-YK-------------------------------------  123 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~-~-~-~~-------------------------------------  123 (204)
                      |||||||+|+||+++|+++++|||+|++|+|+..+. . . +.                                     
T Consensus       123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~g  202 (303)
T PRK06436        123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVNDGISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKG  202 (303)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcccCcccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCC
Confidence            999999999999999999999999999999864321 0 0 11                                     


Q ss_pred             --------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCcCCCCceEEcccCC-CCcHHHHHHHHHHHHHHHHHHH
Q 045521          124 --------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAA-SGTEETRKATADIVIENLEACF  194 (204)
Q Consensus       124 --------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l~~~~nvilTPH~a-~~t~~~~~~~~~~~~~nl~~~~  194 (204)
                              |++||++||+++|++|++.||+||||++||++++.  .+|||++|||++ +.|.++.+++.+.+++|+.+|+
T Consensus       203 a~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~--~~~nviiTPHi~g~~t~e~~~~~~~~~~~ni~~~~  280 (303)
T PRK06436        203 LAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITET--NPDNVILSPHVAGGMSGEIMQPAVALAFENIKNFF  280 (303)
T ss_pred             eEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccC--CCCCEEECCccccccCHHHHHHHHHHHHHHHHHHH
Confidence                    99999999999999999999999999999986653  689999999976 5899999999999999999999


Q ss_pred             cCCCCCCCCC
Q 045521          195 LNKPLLTPVV  204 (204)
Q Consensus       195 ~g~~~~~~v~  204 (204)
                      +|++ .|.|+
T Consensus       281 ~g~~-~~~V~  289 (303)
T PRK06436        281 EGKP-KNIVR  289 (303)
T ss_pred             cCCC-CceEc
Confidence            9987 57764

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=100.00  E-value=3.7e-48  Score=337.71  Aligned_cols=184  Identities=27%  Similarity=0.413  Sum_probs=168.0

Q ss_pred             CCCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhhHHHhcCCCCCCccccc
Q 045521            1 VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTK   80 (204)
Q Consensus         1 t~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~w~~~~~~~~~   80 (204)
                      |++++++++. |+||||+++++|+||||+++++++||.|+|+||+++.+||||+++++|++.|+            .+.+
T Consensus        47 t~v~~~ll~~-~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~------------~g~~  113 (381)
T PRK00257         47 TRVDRALLEG-SRVRFVGTCTIGTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER------------EGVD  113 (381)
T ss_pred             CCCCHHHhcC-CCCeEEEECCccccccCHHHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc------------cCCC
Confidence            5789999984 89999999999999999999999999999999999999999999999999985            2468


Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCC---CCC----------------------------------
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNT---KYK----------------------------------  123 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~---~~~----------------------------------  123 (204)
                      |+||||||||+|+||+++|+++++|||+|++||+......   .+.                                  
T Consensus       114 l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~  193 (381)
T PRK00257        114 LAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAF  193 (381)
T ss_pred             cCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHH
Confidence            9999999999999999999999999999999997532110   000                                  


Q ss_pred             ---------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCcCCCCceEEcccCCCCcHHHHHHHHHHHHH
Q 045521          124 ---------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATADIVIE  188 (204)
Q Consensus       124 ---------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l~~~~nvilTPH~a~~t~~~~~~~~~~~~~  188 (204)
                                     |++||++||+++|++|++.+|+||||++||.++++||.. |+++|||+||+|.++..++.+++++
T Consensus       194 l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~-nvi~TPHiAg~s~e~~~r~~~~~~~  272 (381)
T PRK00257        194 LASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQIDLELADL-CTIATPHIAGYSLDGKARGTAQIYQ  272 (381)
T ss_pred             HhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCChhhhhC-CEEEcCccccCCHHHHHHHHHHHHH
Confidence                           999999999999999999999999999999877789986 9999999999999999999999999


Q ss_pred             HHHHHHcCCC
Q 045521          189 NLEACFLNKP  198 (204)
Q Consensus       189 nl~~~~~g~~  198 (204)
                      |+.+|+.+.+
T Consensus       273 nl~~~~~~~~  282 (381)
T PRK00257        273 ALCRFFGIPA  282 (381)
T ss_pred             HHHHHHcCCC
Confidence            9999998764

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=100.00  E-value=4.6e-36  Score=237.65  Aligned_cols=118  Identities=46%  Similarity=0.673  Sum_probs=99.4

Q ss_pred             HHHHHHHHhh------HHHhcCCC-CCCccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCC-----C-
Q 045521           55 IGLTLAVLRR------FVRSEDGE-MGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNT-----K-  121 (204)
Q Consensus        55 l~~~L~~~R~------~~~~~~w~-~~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~-----~-  121 (204)
                      +++||++.|+      .++++.|. +....+.+|+|+||||||+|+||+++|+++++|||+|+||+|+.++..     . 
T Consensus         1 i~l~L~~~R~~~~~~~~~~~~~W~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~   80 (178)
T PF02826_consen    1 IALMLALLRRLPEYHEAQRNGEWASRERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV   80 (178)
T ss_dssp             HHHHHHHHTTHHHHHHHHHTTBHHHHTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE
T ss_pred             ChHHHHHHhCHHHHHHHHHcCCCCCCcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc
Confidence            6899999999      56789992 223457899999999999999999999999999999999999876321     0 


Q ss_pred             -CC---------------------------------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCC
Q 045521          122 -YK---------------------------------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQV  155 (204)
Q Consensus       122 -~~---------------------------------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~  155 (204)
                       +.                                             |++|||+||+++|++|+|+||+||||++||++
T Consensus        81 ~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~  160 (178)
T PF02826_consen   81 EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFEPEPLP  160 (178)
T ss_dssp             EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-SSSSSS
T ss_pred             eeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCCCCCCC
Confidence             00                                             99999999999999999999999999999998


Q ss_pred             CC-CcCCCCceEEcccCC
Q 045521          156 PE-ELFGLENVVLLPHAA  172 (204)
Q Consensus       156 ~~-~l~~~~nvilTPH~a  172 (204)
                      .+ |||++|||++|||+|
T Consensus       161 ~~~~l~~~~nvi~TPH~a  178 (178)
T PF02826_consen  161 ADSPLWDLPNVILTPHIA  178 (178)
T ss_dssp             TTHHHHTSTTEEEESS-T
T ss_pred             CCChHHcCCCEEEeCccC
Confidence            76 999999999999986

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>KOG0067 consensus Transcription factor CtBP [Transcription]

Probab=99.92  E-value=3.5e-25  Score=188.06  Aligned_cols=190  Identities=28%  Similarity=0.430  Sum_probs=164.6

Q ss_pred             CCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCCCC
Q 045521            2 GADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEMGY   75 (204)
Q Consensus         2 ~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~~~   75 (204)
                      .++++-+++++-||++...+.|+|++|+.++.+.||.|||.|+..-+.+|+-++.++|.++|+      ..++|.|.+..
T Consensus        84 ~l~reDlEkfkalRv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~hIl~l~rrntw~cq~l~eg~~~q~~  163 (435)
T KOG0067|consen   84 TLPREDLEKFKALRVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCHILNLYRRNTWLCQALREGTCTQGL  163 (435)
T ss_pred             ccchhhHHHhhhhceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHHHHHhhhcccchhhhhhcccceeech
Confidence            478899999999999999999999999999999999999999999999999999999999999      45778776311


Q ss_pred             -------ccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCC---------------CC----------
Q 045521           76 -------KLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTK---------------YK----------  123 (204)
Q Consensus        76 -------~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~---------------~~----------  123 (204)
                             .-....+|.++|++|+|++|++++.++++||..|++||+......+               |.          
T Consensus       164 ~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~~g~~~~lg~~rVytlqd~~~~sd~~S~hc~~  243 (435)
T KOG0067|consen  164 EQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLIDGIDKSLGLQRVYTLQDLLYQSDCVSLHCNL  243 (435)
T ss_pred             hhhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchhhhhhhhhcccceecccchhhhhccceeeeccc
Confidence                   1134689999999999999999999999999999999876432100               00          


Q ss_pred             ---------------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCC--CCCcCCCCceEEcccCCCC
Q 045521          124 ---------------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQV--PEELFGLENVVLLPHAASG  174 (204)
Q Consensus       124 ---------------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~--~~~l~~~~nvilTPH~a~~  174 (204)
                                                 |.+||+.+|.++|++|++.+++       |..  ..||.+.||.++|||.+++
T Consensus       244 ~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa-------~~~~~~~~l~d~pn~ic~~~ta~~  316 (435)
T KOG0067|consen  244 NEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAA-------PRSFKQGPLKDAPNLICTPHTAWY  316 (435)
T ss_pred             CcccccccccccceeecccceEeeecccccCChHHHHhhhccCceeccc-------CcccccccccCCCCCCCCcccchh
Confidence                                       9999999999999999999888       221  2378899999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHcCCC
Q 045521          175 TEETRKATADIVIENLEACFLNKP  198 (204)
Q Consensus       175 t~~~~~~~~~~~~~nl~~~~~g~~  198 (204)
                      ++.+..++.+.+...+++-+.|..
T Consensus       317 ~e~~~~e~re~aa~eiR~ai~g~i  340 (435)
T KOG0067|consen  317 SEAASVELREVAALEIRRAITGRI  340 (435)
T ss_pred             hHHHHHHHHHHHhhhhhhccCCCC
Confidence            999999999999999998887754

>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.80  E-value=2.1e-19  Score=135.63  Aligned_cols=53  Identities=42%  Similarity=0.679  Sum_probs=49.0

Q ss_pred             CCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHH
Q 045521            2 GADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAA   54 (204)
Q Consensus         2 ~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~   54 (204)
                      ++++++++++|+||||++.|+|+|+||+++|+++||.|+|+||+++.+||||+
T Consensus        49 ~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~a~~~gI~V~n~~g~~~~aVAE~a  101 (133)
T PF00389_consen   49 PLTAEVLEAAPNLKLISTAGAGVDNIDLEAAKERGIPVTNVPGYNAEAVAEHA  101 (133)
T ss_dssp             TBSHHHHHHHTT-SEEEESSSSCTTB-HHHHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred             CcCHHHHhccceeEEEEEcccccCcccHHHHhhCeEEEEEeCCcCCcchhccc
Confidence            48999999999999999999999999999999999999999999999999999

The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.60  E-value=2.2e-15  Score=127.71  Aligned_cols=98  Identities=22%  Similarity=0.310  Sum_probs=87.1

Q ss_pred             CCCHHHHhcCCCceEEEECCCCCCCCChh-hHhhCCcEEE------eCCCCCchhHHHHHHHHHHHHHhhHHHhcCCCCC
Q 045521            2 GADAELIDSLPKLEIVATCSAGLDKIDLV-KCKEKGIQVT------NTPDVLTDDVADAAIGLTLAVLRRFVRSEDGEMG   74 (204)
Q Consensus         2 ~i~~~~l~~~~~Lk~I~~~~~G~d~id~~-~~~~~gI~v~------n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~w~~~   74 (204)
                      ++++++++.+|   .++...+|+++.|++ +|+++||+|+      |++.+++.++||+++++++...            
T Consensus        81 ~l~~~~l~~~~---~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~~------------  145 (287)
T TIGR02853        81 VLTPELLESTK---GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEHT------------  145 (287)
T ss_pred             cccHHHHHhcC---CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHhc------------
Confidence            57889999988   367788999999999 8999999999      8899999999999999888442            


Q ss_pred             CccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           75 YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        75 ~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                         +.+++|++++|+|+|.||+.+|+.|++||++|.+++|+..
T Consensus       146 ---~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~  185 (287)
T TIGR02853       146 ---DFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSA  185 (287)
T ss_pred             ---CCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence               3478999999999999999999999999999999998753

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=99.48  E-value=2.7e-13  Score=121.00  Aligned_cols=127  Identities=20%  Similarity=0.305  Sum_probs=97.1

Q ss_pred             EECCCCCCCCC-hhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhhHHHhcCCCCCCccccccCCCEEEEEeCChHHH
Q 045521           18 ATCSAGLDKID-LVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTKISGRSVGIIGLGRIGM   96 (204)
Q Consensus        18 ~~~~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~w~~~~~~~~~l~g~tvGIvG~G~IG~   96 (204)
                      =-+++|+..+- ++.....+|+|+|+|++++.+++|+++++++++....+|.+        +..+.||||+|+|+|+||+
T Consensus       196 EeTttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~~R~~--------~~~LaGKtVgVIG~G~IGr  267 (476)
T PTZ00075        196 EETTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLIDGIFRAT--------DVMIAGKTVVVCGYGDVGK  267 (476)
T ss_pred             ecchHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHHHHHHHhc--------CCCcCCCEEEEECCCHHHH
Confidence            34667776652 22223468999999999999999999999999996666554        2479999999999999999


Q ss_pred             HHHHHHhhcCCEEEEEcCCCCCC-----CCCC----------------------------------c------ceeCHHH
Q 045521           97 AVAKRAEAFGCFISYRSRAEKPN-----TKYK----------------------------------G------ALVDESE  131 (204)
Q Consensus        97 ~va~~~~~fg~~V~~~~r~~~~~-----~~~~----------------------------------G------~lvd~~a  131 (204)
                      .+|+++++|||+|+++++.+...     .++.                                  |      +..|++.
T Consensus       268 ~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~atGt~~iI~~e~~~~MKpGAiLINvGr~d~Ei  347 (476)
T PTZ00075        268 GCAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTATGNKDIITLEHMRRMKNNAIVGNIGHFDNEI  347 (476)
T ss_pred             HHHHHHHHCCCEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEECCCcccccCHHHHhccCCCcEEEEcCCCchHH
Confidence            99999999999999986553211     0100                                  2      2238889


Q ss_pred             HHHHHHcCCceEEEeeCCCCCCCCC
Q 045521          132 LVSALLEDRLAAAVLDVFEHEPQVP  156 (204)
Q Consensus       132 L~~aL~~g~i~ga~lDV~~~EP~~~  156 (204)
                      ++++|+++.    ++|+++.||...
T Consensus       348 ~i~aL~~~~----~vdv~evep~v~  368 (476)
T PTZ00075        348 QVAELEAYP----GIEIVEIKPQVD  368 (476)
T ss_pred             hHHHHHhcC----CceeecccCCCC
Confidence            999998754    789999998654

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=99.15  E-value=2.3e-10  Score=97.53  Aligned_cols=98  Identities=20%  Similarity=0.294  Sum_probs=81.8

Q ss_pred             CCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCC------CchhHHHHHHHHHHHHHhhHHHhcCCCCCCc
Q 045521            3 ADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDV------LTDDVADAAIGLTLAVLRRFVRSEDGEMGYK   76 (204)
Q Consensus         3 i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~------~~~~vAE~~l~~~L~~~R~~~~~~~w~~~~~   76 (204)
                      ++++.++.+|+...+. .|.+.++++ +.+.++||.+.+....      ++.++||.++.+.+...              
T Consensus        83 ~~~~~l~~l~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~~ns~~~aegav~~a~~~~--------------  146 (296)
T PRK08306         83 LTEELLELTPEHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVAILNSIPTAEGAIMMAIEHT--------------  146 (296)
T ss_pred             chHHHHHhcCCCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhhhhccHhHHHHHHHHHHHhC--------------
Confidence            4788999999997554 588889987 7889999999987654      88999999777654211              


Q ss_pred             cccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           77 LTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        77 ~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                       +.++.|++++|+|+|.+|+.+++.|+.+|++|.+++|+..
T Consensus       147 -~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~  186 (296)
T PRK08306        147 -PITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSA  186 (296)
T ss_pred             -CCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence             2467899999999999999999999999999999998753

>PLN02494 adenosylhomocysteinase

Probab=98.76  E-value=6.7e-09  Score=92.90  Aligned_cols=73  Identities=18%  Similarity=0.181  Sum_probs=61.0

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC-----CCCC-------------------------------
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN-----TKYK-------------------------------  123 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~-----~~~~-------------------------------  123 (204)
                      .+.||+|+|+|+|.||+.+|+++++|||+|+++++.+...     .++.                               
T Consensus       251 ~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVVI~tTGt~~vI~~e~L~~  330 (477)
T PLN02494        251 MIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLTLEDVVSEADIFVTTTGNKDIIMVDHMRK  330 (477)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEEEECCCCccchHHHHHhc
Confidence            4789999999999999999999999999999997765310     1110                               


Q ss_pred             -------------cceeCHHHHHHH--HHcCCceEEEeeCCCCCC
Q 045521          124 -------------GALVDESELVSA--LLEDRLAAAVLDVFEHEP  153 (204)
Q Consensus       124 -------------G~lvd~~aL~~a--L~~g~i~ga~lDV~~~EP  153 (204)
                                   +..||+++|.++  ++++.++ +.+|+|+.|-
T Consensus       331 MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~d  374 (477)
T PLN02494        331 MKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFPD  374 (477)
T ss_pred             CCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcCC
Confidence                         678999999998  9999998 9999998753

>TIGR00936 ahcY adenosylhomocysteinase

Probab=98.44  E-value=2.8e-07  Score=81.62  Aligned_cols=72  Identities=21%  Similarity=0.288  Sum_probs=58.0

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC-----CCC------------C-------------------
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN-----TKY------------K-------------------  123 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~-----~~~------------~-------------------  123 (204)
                      .+.|++|+|+|+|.||+.+|+++++||++|+++++.+...     .++            +                   
T Consensus       192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~~leeal~~aDVVItaTG~~~vI~~~~~~~  271 (406)
T TIGR00936       192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKIGDIFITATGNKDVIRGEHFEN  271 (406)
T ss_pred             CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeCCHHHHHhcCCEEEECCCCHHHHHHHHHhc
Confidence            4789999999999999999999999999999986554210     000            0                   


Q ss_pred             ------------cce-eCHHHHHHHHHcCCceEEEeeCCCC
Q 045521          124 ------------GAL-VDESELVSALLEDRLAAAVLDVFEH  151 (204)
Q Consensus       124 ------------G~l-vd~~aL~~aL~~g~i~ga~lDV~~~  151 (204)
                                  +.+ ||.++|.+++.+.+..+..+|+|.-
T Consensus       272 mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~  312 (406)
T TIGR00936       272 MKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL  312 (406)
T ss_pred             CCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence                        565 9999999998887777799999873

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=98.36  E-value=4.6e-07  Score=77.74  Aligned_cols=38  Identities=26%  Similarity=0.406  Sum_probs=34.6

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..|+||||||||+|+||+++|++|++|||+|+++++..
T Consensus        12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~   49 (335)
T PRK13403         12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPG   49 (335)
T ss_pred             hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcc
Confidence            46999999999999999999999999999998886543

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.34  E-value=1.9e-07  Score=75.25  Aligned_cols=92  Identities=17%  Similarity=0.371  Sum_probs=64.6

Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC--------C-----------CCC-------cceeCHHH
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN--------T-----------KYK-------GALVDESE  131 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~--------~-----------~~~-------G~lvd~~a  131 (204)
                      +.+++||+++|+|+|++|+.+|+.|..+|++|+++|++....        .           ..+       +.+|+++.
T Consensus        23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~~~l~~~~~Dv~vp~A~~~~I~~~~  102 (200)
T cd01075          23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAPEEIYSVDADVFAPCALGGVINDDT  102 (200)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcchhhccccCCEEEecccccccCHHH
Confidence            457899999999999999999999999999999988754210        0           000       67788777


Q ss_pred             HHHHHHcCCceEEEeeCCCCCCCCCCCcCCCCceEEcccCC
Q 045521          132 LVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAA  172 (204)
Q Consensus       132 L~~aL~~g~i~ga~lDV~~~EP~~~~~l~~~~nvilTPH~a  172 (204)
                      + +.|+.+.|.+.+-+.+.. |. ....+.-..+++-|.+.
T Consensus       103 ~-~~l~~~~v~~~AN~~~~~-~~-~~~~L~~~Gi~~~Pd~~  140 (200)
T cd01075         103 I-PQLKAKAIAGAANNQLAD-PR-HGQMLHERGILYAPDYV  140 (200)
T ss_pred             H-HHcCCCEEEECCcCccCC-Hh-HHHHHHHCCCEEeCcee
Confidence            6 667777777777666543 10 12444455677777443

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=98.16  E-value=6.3e-06  Score=73.47  Aligned_cols=91  Identities=18%  Similarity=0.227  Sum_probs=63.0

Q ss_pred             EECCCCCCCC-ChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhhHHHhcCCCC-CCccccccCCCEEEEEeCChHH
Q 045521           18 ATCSAGLDKI-DLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRSEDGEM-GYKLTTKISGRSVGIIGLGRIG   95 (204)
Q Consensus        18 ~~~~~G~d~i-d~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~w~~-~~~~~~~l~g~tvGIvG~G~IG   95 (204)
                      =-+++|+..+ ......+.+++|.|++..+..+.-|...+.-         ++.|.. .......+.|++|+|+|+|.||
T Consensus       154 EeTttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~---------~s~~~ai~rat~~~l~Gk~VlViG~G~IG  224 (425)
T PRK05476        154 EETTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTG---------ESLLDGIKRATNVLIAGKVVVVAGYGDVG  224 (425)
T ss_pred             ecchHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHH---------hhhHHHHHHhccCCCCCCEEEEECCCHHH
Confidence            3466777665 2223345789999999988887555333222         222320 0001235799999999999999


Q ss_pred             HHHHHHHhhcCCEEEEEcCCCC
Q 045521           96 MAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        96 ~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      +.+|++|+++|++|+++++.+.
T Consensus       225 ~~vA~~lr~~Ga~ViV~d~dp~  246 (425)
T PRK05476        225 KGCAQRLRGLGARVIVTEVDPI  246 (425)
T ss_pred             HHHHHHHHhCCCEEEEEcCCch
Confidence            9999999999999999987653

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=98.14  E-value=9.4e-06  Score=66.72  Aligned_cols=57  Identities=23%  Similarity=0.352  Sum_probs=44.7

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCccee-----CHHHHHHHHHc-CCce
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALV-----DESELVSALLE-DRLA  142 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lv-----d~~aL~~aL~~-g~i~  142 (204)
                      .+|++++|.|.|||++|+.+|++|..+|++|++++.+.       |.++     |.++|.+..+. |.+.
T Consensus        27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~-------g~~~~~~Gld~~~l~~~~~~~g~l~   89 (227)
T cd01076          27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSD-------GTIYNPDGLDVPALLAYKKEHGSVL   89 (227)
T ss_pred             CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC-------CeEECCCCCCHHHHHHHHHhcCCcc
Confidence            46899999999999999999999999999999776553       3333     67777766553 4444

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=98.10  E-value=1.2e-05  Score=67.02  Aligned_cols=105  Identities=13%  Similarity=0.188  Sum_probs=66.6

Q ss_pred             chhHHHHHHHHHHHHHhhHHHhcCCCCCCccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcce
Q 045521           47 TDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGAL  126 (204)
Q Consensus        47 ~~~vAE~~l~~~L~~~R~~~~~~~w~~~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~l  126 (204)
                      .++++--++..+..++++            .+.+|+|+||.|.|||++|+.+|++|..+|++|++++.+.       |.+
T Consensus        14 ~~aTg~Gv~~~~~~~~~~------------~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~-------G~i   74 (254)
T cd05313          14 PEATGYGLVYFVEEMLKD------------RNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSK-------GYV   74 (254)
T ss_pred             CchhHHHHHHHHHHHHHh------------cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC-------ceE
Confidence            445554455555555543            2457899999999999999999999999999999776643       444


Q ss_pred             e-----CHHHHHHH---HHcCC--ceEEEeeCC-CCCCCCCCCcCCCCceEEcccC
Q 045521          127 V-----DESELVSA---LLEDR--LAAAVLDVF-EHEPQVPEELFGLENVVLLPHA  171 (204)
Q Consensus       127 v-----d~~aL~~a---L~~g~--i~ga~lDV~-~~EP~~~~~l~~~~nvilTPH~  171 (204)
                      .     |.++|.+.   -++..  +..+. +-+ ..++..+..+|.+|--|+-|=-
T Consensus        75 ~~~~Gld~~~l~~l~~~~~~~~~~v~~~~-~~~~~a~~~~~~~~~~~~~DIliPcA  129 (254)
T cd05313          75 YDPDGFTGEKLAELKEIKEVRRGRVSEYA-KKYGTAKYFEGKKPWEVPCDIAFPCA  129 (254)
T ss_pred             ECCCCCCHHHHHHHHHHHHhcCCcHHHHh-hcCCCCEEeCCcchhcCCCcEEEecc
Confidence            4     44455222   22222  33221 111 1344445678888888888853

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PLN02477 glutamate dehydrogenase

Probab=97.92  E-value=3.2e-05  Score=68.72  Aligned_cols=82  Identities=26%  Similarity=0.298  Sum_probs=57.0

Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCccee-----CHHHHHHHHHc-CCceEEEeeCCCC
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALV-----DESELVSALLE-DRLAAAVLDVFEH  151 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lv-----d~~aL~~aL~~-g~i~ga~lDV~~~  151 (204)
                      +.+|.|+||.|.|||++|+.+|++|...|++|++++.+.       |.++     |.++|++.-++ |.+.++    ...
T Consensus       201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~-------G~iy~~~GLD~~~L~~~k~~~g~l~~~----~~a  269 (410)
T PLN02477        201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDIT-------GAVKNENGLDIPALRKHVAEGGGLKGF----PGG  269 (410)
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCC-------CeEECCCCCCHHHHHHHHHhcCchhcc----ccc
Confidence            457999999999999999999999999999999775543       3343     56677665443 334322    223


Q ss_pred             CCCCCCCcCCCCceEEccc
Q 045521          152 EPQVPEELFGLENVVLLPH  170 (204)
Q Consensus       152 EP~~~~~l~~~~nvilTPH  170 (204)
                      ++..+..+|..|--|+-|=
T Consensus       270 ~~i~~~e~l~~~~DvliP~  288 (410)
T PLN02477        270 DPIDPDDILVEPCDVLIPA  288 (410)
T ss_pred             eEecCccceeccccEEeec
Confidence            4444456666676677665

>PRK14031 glutamate dehydrogenase; Provisional

Probab=97.87  E-value=5.9e-05  Score=67.53  Aligned_cols=86  Identities=19%  Similarity=0.266  Sum_probs=56.6

Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcce-----eCHHHHH--HHHH---cCCceEEEee
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGAL-----VDESELV--SALL---EDRLAAAVLD  147 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~l-----vd~~aL~--~aL~---~g~i~ga~lD  147 (204)
                      +.+|.|+||.|.|+|++|+..|+.|..+|++|++++.+.       |.+     +|.++|.  ..++   .+++.++.- 
T Consensus       223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~-------G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~-  294 (444)
T PRK14031        223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSD-------GYIYDPDGIDREKLDYIMELKNLYRGRIREYAE-  294 (444)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC-------CeEECCCCCCHHHHHHHHHHHhhcCCchhhhHh-
Confidence            457999999999999999999999999999999977644       333     6666664  1122   355654321 


Q ss_pred             CCCCCCCCCCCcCCCCceEEcccC
Q 045521          148 VFEHEPQVPEELFGLENVVLLPHA  171 (204)
Q Consensus       148 V~~~EP~~~~~l~~~~nvilTPH~  171 (204)
                      -+..+....+.+|+.+--|+-|=.
T Consensus       295 ~~ga~~i~~d~~~~~~cDIliPaA  318 (444)
T PRK14031        295 KYGCKYVEGARPWGEKGDIALPSA  318 (444)
T ss_pred             hcCCEEcCCcccccCCCcEEeecc
Confidence            111122233456666666666643

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=97.83  E-value=2.6e-05  Score=60.71  Aligned_cols=38  Identities=21%  Similarity=0.489  Sum_probs=29.8

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..+.||++.|+|||.+|+-+|+.|+++|++|..++..+
T Consensus        19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP   56 (162)
T PF00670_consen   19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP   56 (162)
T ss_dssp             S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred             eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence            46899999999999999999999999999999988754

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK09414 glutamate dehydrogenase; Provisional

Probab=97.82  E-value=0.00018  Score=64.56  Aligned_cols=105  Identities=17%  Similarity=0.238  Sum_probs=69.1

Q ss_pred             chhHHHHHHHHHHHHHhhHHHhcCCCCCCccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcce
Q 045521           47 TDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGAL  126 (204)
Q Consensus        47 ~~~vAE~~l~~~L~~~R~~~~~~~w~~~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~l  126 (204)
                      .++++--++..+...+++            .+.+|.|+||.|.|||++|+.+|+.|..+|++|++++.+.       |.+
T Consensus       208 ~~aTg~Gv~~~~~~~~~~------------~~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~-------G~i  268 (445)
T PRK09414        208 TEATGYGLVYFAEEMLKA------------RGDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSS-------GYV  268 (445)
T ss_pred             CCcccHHHHHHHHHHHHh------------cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCC-------ceE
Confidence            445555555555544443            1457899999999999999999999999999999885432       222


Q ss_pred             -----eCHHHHHHHHHc--CCceEEEeeCCCCCCCCCCCcCCCCceEEcccC
Q 045521          127 -----VDESELVSALLE--DRLAAAVLDVFEHEPQVPEELFGLENVVLLPHA  171 (204)
Q Consensus       127 -----vd~~aL~~aL~~--g~i~ga~lDV~~~EP~~~~~l~~~~nvilTPH~  171 (204)
                           +|.++|++.-++  |.+.++. +-+..++..+..+|..+--|+-|=.
T Consensus       269 yn~~GLD~~~L~~~k~~~~~~l~~~~-~~~~~~~i~~~~i~~~d~DVliPaA  319 (445)
T PRK09414        269 YDEEGIDLEKLKEIKEVRRGRISEYA-EEFGAEYLEGGSPWSVPCDIALPCA  319 (445)
T ss_pred             ECCCCCCHHHHHHHHHhcCCchhhhh-hhcCCeecCCccccccCCcEEEecC
Confidence                 477788776654  3565432 1112233344567777777777743

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=97.80  E-value=8.4e-05  Score=66.58  Aligned_cols=87  Identities=15%  Similarity=0.224  Sum_probs=58.0

Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcce-----eCHHHH--HHHHH---cCCceEEEee
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGAL-----VDESEL--VSALL---EDRLAAAVLD  147 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~l-----vd~~aL--~~aL~---~g~i~ga~lD  147 (204)
                      +.+|.|+||.|-|+|++|+.+|++|..+|++|+.++.+.       |.+     +|.++|  +..++   .|.+..+.--
T Consensus       232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~-------G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~  304 (454)
T PTZ00079        232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSD-------GYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKH  304 (454)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCC-------CcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhc
Confidence            457999999999999999999999999999999776554       333     355555  22222   2555543110


Q ss_pred             CCCCCCCCCCCcCCCCceEEcccC
Q 045521          148 VFEHEPQVPEELFGLENVVLLPHA  171 (204)
Q Consensus       148 V~~~EP~~~~~l~~~~nvilTPH~  171 (204)
                      ....+..+...+|..|--|+.|=-
T Consensus       305 ~~~a~~~~~~~~~~~~cDI~iPcA  328 (454)
T PTZ00079        305 SSTAKYVPGKKPWEVPCDIAFPCA  328 (454)
T ss_pred             cCCcEEeCCcCcccCCccEEEecc
Confidence            111223334578888888888853

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=97.76  E-value=3.6e-05  Score=67.76  Aligned_cols=88  Identities=24%  Similarity=0.351  Sum_probs=61.8

Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCC
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHEPQVPE  157 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~  157 (204)
                      +.+|+|+||.|-|+|++|+.+|+.+...|++|+.+|.+....  |.-.=+|.++|. .+++ +. +-..+-+..++++.+
T Consensus       202 g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i--~~~~Gld~~~l~-~~~~-~~-~~v~~~~ga~~i~~~  276 (411)
T COG0334         202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGI--YDEDGLDVEALL-ELKE-RR-GSVAEYAGAEYITNE  276 (411)
T ss_pred             CCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCce--ecCCCCCHHHHH-HHhh-hh-hhHHhhcCceEcccc
Confidence            445899999999999999999999999999999988765310  111225667777 3332 11 122233345667667


Q ss_pred             CcCCCCceEEccc
Q 045521          158 ELFGLENVVLLPH  170 (204)
Q Consensus       158 ~l~~~~nvilTPH  170 (204)
                      .+|..|--|+.|-
T Consensus       277 e~~~~~cDIl~Pc  289 (411)
T COG0334         277 ELLEVDCDILIPC  289 (411)
T ss_pred             ccccccCcEEccc
Confidence            8899888888885

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.69  E-value=6.9e-05  Score=61.18  Aligned_cols=60  Identities=22%  Similarity=0.307  Sum_probs=43.3

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHc-CCc
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLE-DRL  141 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~-g~i  141 (204)
                      .+|.|++|.|.|||++|+.+|+.|...|++|++++.+...  -|.- =+|.+++++..+. +.+
T Consensus        19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~--i~~~-Gld~~~l~~~~~~~~~~   79 (217)
T cd05211          19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGY--IYDP-GITTEELINYAVALGGS   79 (217)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCc--EECC-CCCHHHHHHHHHhhCCc
Confidence            4689999999999999999999999999998776554310  0111 1667777776543 434

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK14030 glutamate dehydrogenase; Provisional

Probab=97.67  E-value=0.00032  Score=62.91  Aligned_cols=87  Identities=18%  Similarity=0.299  Sum_probs=56.8

Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCccee-----CHHH---HHHHHHc-CCceEEEeeC
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALV-----DESE---LVSALLE-DRLAAAVLDV  148 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lv-----d~~a---L~~aL~~-g~i~ga~lDV  148 (204)
                      +.+|.|+||.|-|+|++|+.+|++|..+|++|++++.+.       |.+.     |.++   |.+.-++ |.+.....+-
T Consensus       223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~-------G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~  295 (445)
T PRK14030        223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPD-------GYIYDPDGISGEKIDYMLELRASGNDIVAPYAEK  295 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCC-------ceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhc
Confidence            457999999999999999999999999999999977654       4444     4555   3333222 2221001111


Q ss_pred             C-CCCCCCCCCcCCCCceEEcccC
Q 045521          149 F-EHEPQVPEELFGLENVVLLPHA  171 (204)
Q Consensus       149 ~-~~EP~~~~~l~~~~nvilTPH~  171 (204)
                      | ..++.+...+|.+|--|+-|=-
T Consensus       296 ~~ga~~i~~~~~~~~~cDVliPcA  319 (445)
T PRK14030        296 FPGSTFFAGKKPWEQKVDIALPCA  319 (445)
T ss_pred             CCCCEEcCCccceeccccEEeecc
Confidence            2 1233344578888888888853

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=97.62  E-value=7.8e-05  Score=64.50  Aligned_cols=37  Identities=32%  Similarity=0.389  Sum_probs=33.4

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      ..|+|+||||||+|++|+++|+.|+.+|++|+++++.
T Consensus        13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~   49 (330)
T PRK05479         13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLRE   49 (330)
T ss_pred             hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECC
Confidence            4689999999999999999999999999999876554

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=97.59  E-value=0.0001  Score=65.59  Aligned_cols=38  Identities=18%  Similarity=0.308  Sum_probs=34.7

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..+.|++|+|+|+|.||+.++++++++|++|+++++.+
T Consensus       198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~  235 (413)
T cd00401         198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP  235 (413)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            34789999999999999999999999999999987764

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=97.37  E-value=0.00028  Score=60.76  Aligned_cols=34  Identities=32%  Similarity=0.427  Sum_probs=30.4

Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcC
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR  114 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r  114 (204)
                      |+||+|||||+|++|+++|+.|+.+|++|+++.+
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~   34 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLR   34 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEEC
Confidence            5799999999999999999999999999875443

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PLN02712 arogenate dehydrogenase

Probab=97.25  E-value=0.00044  Score=65.22  Aligned_cols=39  Identities=26%  Similarity=0.330  Sum_probs=36.2

Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +.++.+++|||||+|.||+.+|+.++.+|.+|.+++|+.
T Consensus       364 ~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~  402 (667)
T PLN02712        364 VNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSD  402 (667)
T ss_pred             cCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECCh
Confidence            567899999999999999999999999999999999874

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.21  E-value=0.0016  Score=58.77  Aligned_cols=84  Identities=17%  Similarity=0.243  Sum_probs=54.8

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEE  158 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~  158 (204)
                      .-+.+++|+|+|+|..|+.+|+.|+..|++|.++|+...+.         ..++.+.|++-.+     .++.... .+..
T Consensus        10 ~~~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~---------~~~~~~~l~~~gi-----~~~~~~~-~~~~   74 (458)
T PRK01710         10 KFIKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEE---------LGEVSNELKELGV-----KLVLGEN-YLDK   74 (458)
T ss_pred             hhhcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCcc---------chHHHHHHHhCCC-----EEEeCCC-ChHH
Confidence            34678999999999999999999999999999999765321         1223333443212     1111110 0122


Q ss_pred             cCCCCceEEcccCCCCcHH
Q 045521          159 LFGLENVVLLPHAASGTEE  177 (204)
Q Consensus       159 l~~~~nvilTPH~a~~t~~  177 (204)
                      +.+.+-|+.||++.....+
T Consensus        75 ~~~~dlVV~Spgi~~~~p~   93 (458)
T PRK01710         75 LDGFDVIFKTPSMRIDSPE   93 (458)
T ss_pred             hccCCEEEECCCCCCCchH
Confidence            4456789999999865443

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=97.20  E-value=0.00058  Score=53.01  Aligned_cols=34  Identities=29%  Similarity=0.537  Sum_probs=29.5

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      ++||+||+|+.|+.+|+.|..-|.+|.+|+|++.
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~   35 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPE   35 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHH
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchh
Confidence            5899999999999999999999999999998753

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.10  E-value=0.00071  Score=57.95  Aligned_cols=36  Identities=36%  Similarity=0.599  Sum_probs=34.2

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .|+.+||+|+|.+|+.-.+.+|||||+|+++|++.+
T Consensus       181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~  216 (360)
T KOG0023|consen  181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSK  216 (360)
T ss_pred             CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCch
Confidence            799999999999999999999999999999999863

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.98  E-value=0.0026  Score=55.20  Aligned_cols=37  Identities=27%  Similarity=0.486  Sum_probs=34.4

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKP  118 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~  118 (204)
                      .|++|+|+|+|..|....+.++++|++|++++++.++
T Consensus       166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K  202 (339)
T COG1064         166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEK  202 (339)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHH
Confidence            4999999999999999999999999999999998753

>PLN02256 arogenate dehydrogenase

Probab=96.89  E-value=0.0016  Score=55.78  Aligned_cols=37  Identities=30%  Similarity=0.425  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +-++++|+|||+|.||+.+|+.++.+|.+|.+++++.
T Consensus        33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~   69 (304)
T PLN02256         33 KSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD   69 (304)
T ss_pred             cCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence            4577899999999999999999999999999998764

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=96.89  E-value=0.0028  Score=43.89  Aligned_cols=36  Identities=25%  Similarity=0.444  Sum_probs=32.4

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhc-CCEEEEEcC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAF-GCFISYRSR  114 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~f-g~~V~~~~r  114 (204)
                      ..+++++++|+|.|.+|+.++..+..+ +.+|..++|
T Consensus        19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            458899999999999999999999998 678888887

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.84  E-value=0.0038  Score=55.81  Aligned_cols=38  Identities=29%  Similarity=0.365  Sum_probs=34.2

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcC-CEEEEEcCCCC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFG-CFISYRSRAEK  117 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg-~~V~~~~r~~~  117 (204)
                      .+.|++|+|+|+|.||+.+++.|+.+| .+|+.++|+..
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~  215 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYE  215 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHH
Confidence            478999999999999999999999999 68999988753

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=96.83  E-value=0.0022  Score=48.26  Aligned_cols=38  Identities=32%  Similarity=0.453  Sum_probs=35.1

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcCCCC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSRAEK  117 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r~~~  117 (204)
                      +++++++.|+|.|.+|+.++..|...|++ |+.++|+..
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~   47 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPE   47 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHH
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHH
Confidence            68999999999999999999999999998 888898753

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.79  E-value=0.0022  Score=54.85  Aligned_cols=36  Identities=28%  Similarity=0.363  Sum_probs=32.9

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .+++|+|||+|.+|+.+|+.+...|.+|..|+|+..
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~   38 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG   38 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            467899999999999999999999999999998754

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=96.78  E-value=0.0008  Score=60.36  Aligned_cols=41  Identities=20%  Similarity=0.254  Sum_probs=27.8

Q ss_pred             CCCC-CCcc-ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEE
Q 045521           70 DGEM-GYKL-TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFIS  110 (204)
Q Consensus        70 ~w~~-~~~~-~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~  110 (204)
                      .|.+ .++. ...|+||||+|||||+||++-|.-++-.|.+|.
T Consensus        21 ~~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVv   63 (487)
T PRK05225         21 FMDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDIS   63 (487)
T ss_pred             ecchhhccchhHHhCCCEEEEEccCHHHHHHhCCCccccceeE
Confidence            5665 4433 356999999999999999944444444444444

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=96.71  E-value=0.0023  Score=44.81  Aligned_cols=32  Identities=38%  Similarity=0.528  Sum_probs=28.6

Q ss_pred             EEEEEeCChHHHHHHHHHhhcC---CEEE-EEcCCC
Q 045521           85 SVGIIGLGRIGMAVAKRAEAFG---CFIS-YRSRAE  116 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~fg---~~V~-~~~r~~  116 (204)
                      ||||||+|++|+++++.+..-|   .+|. +++|++
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~   36 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSP   36 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcH
Confidence            7999999999999999999999   8998 447765

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.69  E-value=0.0098  Score=53.88  Aligned_cols=80  Identities=23%  Similarity=0.239  Sum_probs=53.1

Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCcC
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELF  160 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l~  160 (204)
                      +.||+|+|+|+|.-|+.+|+.|+..|++|+.+|.....         +.+... .|+++-.   ..  +...+  +..+.
T Consensus         6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~---------~~~~~~-~l~~~~~---~~--~~~~~--~~~~~   68 (468)
T PRK04690          6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAV---------EAREVG-ALADAAL---LV--ETEAS--AQRLA   68 (468)
T ss_pred             cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcc---------cchHHH-HHhhcCE---EE--eCCCC--hHHcc
Confidence            57999999999999999999999999999988854321         112222 2544311   11  11111  12244


Q ss_pred             CCCceEEcccCCCCcHH
Q 045521          161 GLENVVLLPHAASGTEE  177 (204)
Q Consensus       161 ~~~nvilTPH~a~~t~~  177 (204)
                      +.+-||.||++.-...+
T Consensus        69 ~~d~vV~SpgI~~~~p~   85 (468)
T PRK04690         69 AFDVVVKSPGISPYRPE   85 (468)
T ss_pred             CCCEEEECCCCCCCCHH
Confidence            56789999999976654

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=96.65  E-value=0.002  Score=53.51  Aligned_cols=52  Identities=29%  Similarity=0.466  Sum_probs=41.5

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcce-----eCHHHHHHHHHc
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGAL-----VDESELVSALLE  138 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~l-----vd~~aL~~aL~~  138 (204)
                      +++|+||.|-|+|++|+.+|+.|...|++|++++.+.       |.+     +|.++|.+.-++
T Consensus        29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~-------G~i~~~~Gld~~~l~~~~~~   85 (244)
T PF00208_consen   29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSS-------GAIYDPDGLDVEELLRIKEE   85 (244)
T ss_dssp             SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESS-------EEEEETTEEHHHHHHHHHHH
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCc-------eEEEcCCCchHHHHHHHHHH
Confidence            5899999999999999999999999999998875432       223     356777776444

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=96.65  E-value=0.0023  Score=54.18  Aligned_cols=32  Identities=25%  Similarity=0.405  Sum_probs=30.1

Q ss_pred             EEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +|||||+|.+|+.+|+.+...|.+|.+|+|++
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~   32 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP   32 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            48999999999999999999999999999875

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=96.64  E-value=0.0056  Score=46.37  Aligned_cols=32  Identities=22%  Similarity=0.336  Sum_probs=27.0

Q ss_pred             EEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           86 VGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        86 vGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      +-|+|.|+++++++++++.+|++|..+|+.+.
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e   32 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE   32 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence            46899999999999999999999998887654

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=96.62  E-value=0.0028  Score=53.67  Aligned_cols=34  Identities=29%  Similarity=0.428  Sum_probs=31.3

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      ++|||||+|.+|+.+|+.+...|.+|.+|+|++.
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~   36 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPE   36 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            5899999999999999999999999999998753

>TIGR00518 alaDH alanine dehydrogenase

Probab=96.60  E-value=0.0035  Score=55.16  Aligned_cols=37  Identities=27%  Similarity=0.339  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+.+++|.|+|+|.+|+.+++.++.+|++|.+++++.
T Consensus       164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~  200 (370)
T TIGR00518       164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI  200 (370)
T ss_pred             CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            3678899999999999999999999999999998753

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.60  E-value=0.0043  Score=48.07  Aligned_cols=42  Identities=29%  Similarity=0.388  Sum_probs=37.2

Q ss_pred             CccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           75 YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        75 ~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +|...+|+|++|.|||-|.+|.+.++.|...|++|..+++..
T Consensus         5 ~P~~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~   46 (157)
T PRK06719          5 YPLMFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEI   46 (157)
T ss_pred             cceEEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCcc
Confidence            455678999999999999999999999999999998887643

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=96.47  E-value=0.0045  Score=52.18  Aligned_cols=33  Identities=33%  Similarity=0.494  Sum_probs=30.1

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|||||+|.||+.+|..++..|.+|.+++++.
T Consensus         1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~   33 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE   33 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence            379999999999999999999999999998864

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.44  E-value=0.0061  Score=49.16  Aligned_cols=41  Identities=24%  Similarity=0.267  Sum_probs=36.7

Q ss_pred             ccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           76 KLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        76 ~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      |...+|.||+|.|||.|.+|.+.++.|...|++|+.+++..
T Consensus         3 Pl~l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~   43 (202)
T PRK06718          3 PLMIDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPEL   43 (202)
T ss_pred             ceEEEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            44568999999999999999999999999999999988754

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=96.43  E-value=0.0062  Score=47.43  Aligned_cols=37  Identities=24%  Similarity=0.384  Sum_probs=30.4

Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      |++|||.|||||+-|++-|.-|+--|.+|++-.|...
T Consensus         2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s   38 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGS   38 (165)
T ss_dssp             HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTC
T ss_pred             cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCC
Confidence            6899999999999999999999999999987665543

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.39  E-value=0.0051  Score=44.10  Aligned_cols=36  Identities=19%  Similarity=0.270  Sum_probs=32.0

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      .++|++|.|||.|.+|.+=++.|...|++|+.+++.
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~   39 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE   39 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence            589999999999999999999999999999999886

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=96.38  E-value=0.0044  Score=52.79  Aligned_cols=33  Identities=33%  Similarity=0.448  Sum_probs=30.7

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|||||+|.+|+.+|+.+...|.+|.+|+|++
T Consensus         1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~   33 (301)
T PRK09599          1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNP   33 (301)
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCH
Confidence            379999999999999999999999999999875

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=96.37  E-value=0.012  Score=52.77  Aligned_cols=37  Identities=35%  Similarity=0.495  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~  116 (204)
                      .+.|++|+|+|.|.||+.+++.++..|+ +|+.++|+.
T Consensus       179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~  216 (423)
T PRK00045        179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTL  216 (423)
T ss_pred             CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCH
Confidence            3789999999999999999999999998 788888864

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=96.37  E-value=0.0054  Score=52.25  Aligned_cols=32  Identities=28%  Similarity=0.446  Sum_probs=30.1

Q ss_pred             EEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +|||||+|++|+.+|+.+...|.+|.+|+|++
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~   33 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQ   33 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence            79999999999999999999999999999875

>PLN02712 arogenate dehydrogenase

Probab=96.37  E-value=0.0053  Score=58.06  Aligned_cols=38  Identities=26%  Similarity=0.381  Sum_probs=33.2

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..-+.++|||||+|.||+.+|+.++.+|.+|.+++++.
T Consensus        48 ~~~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   85 (667)
T PLN02712         48 DNTTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSD   85 (667)
T ss_pred             ccCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            34456799999999999999999999999999998863

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.35  E-value=0.0076  Score=48.75  Aligned_cols=42  Identities=17%  Similarity=0.266  Sum_probs=37.2

Q ss_pred             ccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           76 KLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        76 ~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      |...+|+|++|.|||-|.+|.+-++.|..+|++|+.+++...
T Consensus         2 P~~l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~   43 (205)
T TIGR01470         2 PVFANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELE   43 (205)
T ss_pred             CeEEEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            344579999999999999999999999999999999988654

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=96.32  E-value=0.0095  Score=45.19  Aligned_cols=38  Identities=29%  Similarity=0.365  Sum_probs=33.3

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcC-CEEEEEcCCC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFG-CFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg-~~V~~~~r~~  116 (204)
                      .++.+++++|+|+|.+|+.+++.+...| .+|..++|+.
T Consensus        15 ~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~   53 (155)
T cd01065          15 IELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL   53 (155)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence            3467899999999999999999999886 6788888875

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=96.32  E-value=0.02  Score=50.40  Aligned_cols=66  Identities=15%  Similarity=0.147  Sum_probs=50.4

Q ss_pred             CchhHHHHHHHHHHHHHhhHHHhcCCCCCCccccccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           46 LTDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        46 ~~~~vAE~~l~~~L~~~R~~~~~~~w~~~~~~~~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..+..++..+-.++...|..+++..+..     .....++|+||| +|.+|+.+|+.++.-|..|.++++..
T Consensus        66 l~~~~~~~i~~~i~~~s~~~q~~~~~~~-----~~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~  132 (374)
T PRK11199         66 VPPDLIEDVLRRVMRESYSSENDKGFKT-----LNPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD  132 (374)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhHHhcccc-----cCcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence            3455567788888888887555544432     112458999999 99999999999999999999999754

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=96.28  E-value=0.0068  Score=51.40  Aligned_cols=33  Identities=27%  Similarity=0.469  Sum_probs=30.9

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|||||+|.+|..+|..+...|.+|+.++++.
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~   37 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP   37 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            689999999999999999999999999998865

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=96.24  E-value=0.0084  Score=54.07  Aligned_cols=78  Identities=22%  Similarity=0.244  Sum_probs=53.1

Q ss_pred             ccCCCEEEEEeCChHHHH-HHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCC
Q 045521           80 KISGRSVGIIGLGRIGMA-VAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEE  158 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~-va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~  158 (204)
                      ..+++++.|+|+|.+|.. +|+.|+..|.+|.+.|....+            . .+.|++-.+.     ++...+  +..
T Consensus         4 ~~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~------------~-~~~l~~~gi~-----~~~~~~--~~~   63 (461)
T PRK00421          4 LRRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESA------------V-TQRLLELGAI-----IFIGHD--AEN   63 (461)
T ss_pred             cCCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCCh------------H-HHHHHHCCCE-----EeCCCC--HHH
Confidence            356789999999999999 799999999999999875421            1 1224432222     221111  123


Q ss_pred             cCCCCceEEcccCCCCcHH
Q 045521          159 LFGLENVVLLPHAASGTEE  177 (204)
Q Consensus       159 l~~~~nvilTPH~a~~t~~  177 (204)
                      +-+.+-|++||++.....+
T Consensus        64 ~~~~d~vv~spgi~~~~~~   82 (461)
T PRK00421         64 IKDADVVVYSSAIPDDNPE   82 (461)
T ss_pred             CCCCCEEEECCCCCCCCHH
Confidence            4456789999999876654

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.14  E-value=0.041  Score=49.22  Aligned_cols=37  Identities=27%  Similarity=0.483  Sum_probs=34.3

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++.+|++.|+|.|.+|.++|+.|...|.+|.++++..
T Consensus         2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4789999999999999999999999999999998864

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.13  E-value=0.015  Score=46.17  Aligned_cols=33  Identities=24%  Similarity=0.359  Sum_probs=26.8

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|+|+|+|.+|.-+|..+...|.+|+++|...
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~   33 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE   33 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence            589999999999999999999999999999764

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=96.13  E-value=0.017  Score=50.63  Aligned_cols=55  Identities=20%  Similarity=0.229  Sum_probs=44.1

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCC------CCcceeCHHHHHHHHH
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTK------YKGALVDESELVSALL  137 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~------~~G~lvd~~aL~~aL~  137 (204)
                      .+||||||-|..|+.++..++.+|.+|+.+++.+.....      +.+..-|.++|.+..+
T Consensus         2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~   62 (372)
T PRK06019          2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAE   62 (372)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHh
Confidence            379999999999999999999999999999886543211      1166678888888776

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=96.13  E-value=0.021  Score=47.50  Aligned_cols=34  Identities=21%  Similarity=0.473  Sum_probs=30.5

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      --++-|+|.|++++.++++++.+|++|..+|+.+
T Consensus       100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~  133 (246)
T TIGR02964       100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSRE  133 (246)
T ss_pred             CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCc
Confidence            3699999999999999999999999998877553

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.12  E-value=0.0061  Score=52.33  Aligned_cols=58  Identities=31%  Similarity=0.406  Sum_probs=42.5

Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcC-CEEEEEcCCCCCC----CCCCcceeCHHHHHHHHHc
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFG-CFISYRSRAEKPN----TKYKGALVDESELVSALLE  138 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg-~~V~~~~r~~~~~----~~~~G~lvd~~aL~~aL~~  138 (204)
                      +.+++|+|+|.|.||+.+++.++..| .+|..++|+....    ..+.+..++.+++.+++..
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~  238 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNE  238 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhc
Confidence            68999999999999999999999876 4688888875421    1122345565666666654

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=96.10  E-value=0.0076  Score=51.35  Aligned_cols=34  Identities=26%  Similarity=0.446  Sum_probs=30.9

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      ++|||||+|.+|..+|+.+...|.+|.+|+|++.
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~   34 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQD   34 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            3799999999999999999999999999998753

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=96.08  E-value=0.0093  Score=50.76  Aligned_cols=34  Identities=21%  Similarity=0.333  Sum_probs=31.1

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      ++|||||+|.+|..+|+.+...|.+|.+|+|++.
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~   35 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQ   35 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            4799999999999999999999999999998754

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=95.97  E-value=0.042  Score=43.56  Aligned_cols=39  Identities=18%  Similarity=0.265  Sum_probs=34.4

Q ss_pred             ccccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           78 TTKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +..++++++.|+|. |.+|+.+++.+...|.+|..++|+.
T Consensus        23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~   62 (194)
T cd01078          23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDL   62 (194)
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            34688999999995 9999999999999999999888864

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=95.97  E-value=0.013  Score=46.37  Aligned_cols=33  Identities=24%  Similarity=0.410  Sum_probs=28.6

Q ss_pred             EEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      +|+|||.|.+|+.+|..+...|++|..+++++.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   33 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE   33 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            699999999999999999999999999998653

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=95.96  E-value=0.015  Score=49.10  Aligned_cols=40  Identities=23%  Similarity=0.311  Sum_probs=35.7

Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHHhhcC-CEEEEEcCCCC
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRAEAFG-CFISYRSRAEK  117 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg-~~V~~~~r~~~  117 (204)
                      +..+.++++.|+|.|.+|+.++..|..+| .+|..++|+..
T Consensus       118 ~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~  158 (278)
T PRK00258        118 GVDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVE  158 (278)
T ss_pred             CCCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence            34688999999999999999999999999 68999999753

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.94  E-value=0.011  Score=51.10  Aligned_cols=33  Identities=30%  Similarity=0.314  Sum_probs=31.1

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|+|||.|.||..+|..+...|++|..+|+++
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~   40 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP   40 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            689999999999999999999999999999865

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.93  E-value=0.0069  Score=49.67  Aligned_cols=52  Identities=31%  Similarity=0.396  Sum_probs=40.3

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCC-----CCC-----cceeCHHHHHHH
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNT-----KYK-----GALVDESELVSA  135 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~-----~~~-----G~lvd~~aL~~a  135 (204)
                      +++.|+|+|+.|+.+|+.|...|..|+.+++......     .+.     |.--|++.|.+|
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~a   62 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEA   62 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhc
Confidence            5799999999999999999999999998887653211     111     666777777766

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.92  E-value=0.016  Score=45.41  Aligned_cols=66  Identities=20%  Similarity=0.206  Sum_probs=47.8

Q ss_pred             cccCCCEEEEEeCChH-HHHHHHHHhhcCCEEEEEcCCCCCCC----CCC--------cceeCHHHHHHHHHcCCceEEE
Q 045521           79 TKISGRSVGIIGLGRI-GMAVAKRAEAFGCFISYRSRAEKPNT----KYK--------GALVDESELVSALLEDRLAAAV  145 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~I-G~~va~~~~~fg~~V~~~~r~~~~~~----~~~--------G~lvd~~aL~~aL~~g~i~ga~  145 (204)
                      .+|.||++.|+|.|.+ |+.+|+.|+..|++|...+|+.....    ..+        ..+++.+.+    +.+   ...
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~~~l~~aDiVIsat~~~~ii~~~~~----~~~---~vi  112 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLKEHTKQADIVIVAVGKPGLVKGDMV----KPG---AVV  112 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHHHHHhhCCEEEEcCCCCceecHHHc----cCC---eEE
Confidence            4699999999999995 99999999999999988888753211    111        347777754    334   467


Q ss_pred             eeCCCC
Q 045521          146 LDVFEH  151 (204)
Q Consensus       146 lDV~~~  151 (204)
                      +|+--+
T Consensus       113 IDla~p  118 (168)
T cd01080         113 IDVGIN  118 (168)
T ss_pred             EEccCC
Confidence            787643

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK06545 prephenate dehydrogenase; Validated

Probab=95.89  E-value=0.01  Score=51.91  Aligned_cols=33  Identities=33%  Similarity=0.320  Sum_probs=28.9

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|+|||+|.||..+|+.++..|.+|..+++.+
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~   33 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDP   33 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCC
Confidence            579999999999999999999998887776654

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=95.87  E-value=0.0097  Score=51.86  Aligned_cols=36  Identities=22%  Similarity=0.431  Sum_probs=32.7

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      -+.||++.|.|||..|+-+|.+++++|++|++..-.
T Consensus       206 liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvD  241 (420)
T COG0499         206 LLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVD  241 (420)
T ss_pred             eecCceEEEecccccchHHHHHhhcCCCeEEEEecC
Confidence            478999999999999999999999999999886543

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=95.86  E-value=0.023  Score=50.27  Aligned_cols=33  Identities=24%  Similarity=0.402  Sum_probs=30.6

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcC-CEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFG-CFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg-~~V~~~~r~~  116 (204)
                      ++|.|||.|.||+.+|..|..-| .+|+..||+.
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~   35 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK   35 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence            68999999999999999998888 9999999985

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=95.79  E-value=0.035  Score=44.95  Aligned_cols=86  Identities=15%  Similarity=0.176  Sum_probs=53.3

Q ss_pred             CCchhHHHHHHHHHHHHHhhHHHhcCCCCCCccccccCCCEEEEEeCChHHHHHHHHH--hhcCCEEEE-EcCCCCCCCC
Q 045521           45 VLTDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRA--EAFGCFISY-RSRAEKPNTK  121 (204)
Q Consensus        45 ~~~~~vAE~~l~~~L~~~R~~~~~~~w~~~~~~~~~l~g~tvGIvG~G~IG~~va~~~--~~fg~~V~~-~~r~~~~~~~  121 (204)
                      ......++|.+..++...|+..           +.. ..++++|+|+|.+|+.+++.+  ...|+++.+ +|+.+.....
T Consensus        58 ~~G~~~~gy~v~~l~~~~~~~l-----------~~~-~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~  125 (213)
T PRK05472         58 EFGKRGVGYNVEELLEFIEKIL-----------GLD-RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGT  125 (213)
T ss_pred             hcCCCCCCeeHHHHHHHHHHHh-----------CCC-CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCC
Confidence            3446667788888888888732           111 356899999999999999863  467898865 5554322111


Q ss_pred             -CCc-ceeCHHHHHHHHHcCCce
Q 045521          122 -YKG-ALVDESELVSALLEDRLA  142 (204)
Q Consensus       122 -~~G-~lvd~~aL~~aL~~g~i~  142 (204)
                       ..| ++...+++.+.+++.++-
T Consensus       126 ~i~g~~v~~~~~l~~li~~~~iD  148 (213)
T PRK05472        126 KIGGIPVYHIDELEEVVKENDIE  148 (213)
T ss_pred             EeCCeEEcCHHHHHHHHHHCCCC
Confidence             111 123445566666655444

>PRK04148 hypothetical protein; Provisional

Probab=95.75  E-value=0.043  Score=41.48  Aligned_cols=57  Identities=23%  Similarity=0.215  Sum_probs=45.4

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCceEEEeeCCCCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHEP  153 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP  153 (204)
                      +++++.+||+| -|..+|..|+..|.+|++.|.++             +++..+.+. .+....-|+|++.+
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~-------------~aV~~a~~~-~~~~v~dDlf~p~~   72 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINE-------------KAVEKAKKL-GLNAFVDDLFNPNL   72 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCH-------------HHHHHHHHh-CCeEEECcCCCCCH
Confidence            56899999999 99999999999999999998764             454444444 45667889997764

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.69  E-value=0.034  Score=45.92  Aligned_cols=36  Identities=14%  Similarity=0.366  Sum_probs=32.1

Q ss_pred             ccCCCEEEEEeC---ChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           80 KISGRSVGIIGL---GRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        80 ~l~g~tvGIvG~---G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      .+.||++.|.|-   +.||+++|+.+..-|++|+..+|.
T Consensus         4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~   42 (257)
T PRK08594          4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAG   42 (257)
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCc
Confidence            578999999997   589999999999999999887664

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.69  E-value=0.015  Score=49.70  Aligned_cols=33  Identities=33%  Similarity=0.269  Sum_probs=30.7

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|+|||.|.+|..+|..+...|.+|..|++++
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~   35 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP   35 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence            479999999999999999999999999999874

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=95.66  E-value=0.044  Score=47.94  Aligned_cols=36  Identities=25%  Similarity=0.374  Sum_probs=32.7

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKP  118 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~  118 (204)
                      .+||||||=|..|+.++.-++.+|.+|+..++....
T Consensus         1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~   36 (375)
T COG0026           1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADA   36 (375)
T ss_pred             CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCC
Confidence            479999999999999999999999999999986643

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=95.65  E-value=0.022  Score=48.59  Aligned_cols=35  Identities=29%  Similarity=0.384  Sum_probs=30.3

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCC--EEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGC--FISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~--~V~~~~r~~  116 (204)
                      ..++|+|||+|.||..+++.++..|.  +|.+++|+.
T Consensus         5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~   41 (307)
T PRK07502          5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA   41 (307)
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence            35789999999999999999988774  899998864

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.62  E-value=0.019  Score=48.54  Aligned_cols=33  Identities=21%  Similarity=0.424  Sum_probs=30.7

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|+|||.|.+|..+|..+...|.+|+.++++.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE   36 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            689999999999999999999999999998865

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=95.61  E-value=0.02  Score=48.30  Aligned_cols=36  Identities=33%  Similarity=0.397  Sum_probs=29.3

Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhh--cCCEEE-EEcCCC
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEA--FGCFIS-YRSRAE  116 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~--fg~~V~-~~~r~~  116 (204)
                      +...+|||||+|+||+.+++.+..  .++++. .++|.+
T Consensus         4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~   42 (271)
T PRK13302          4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDP   42 (271)
T ss_pred             CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCH
Confidence            456899999999999999999875  588886 566654

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=95.58  E-value=0.075  Score=47.96  Aligned_cols=38  Identities=26%  Similarity=0.508  Sum_probs=34.3

Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCC
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKP  118 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~  118 (204)
                      ..+++|.|+|+|.-|..+++.|+..|++|+++|..+.+
T Consensus         5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~   42 (448)
T COG0771           5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP   42 (448)
T ss_pred             ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence            44999999999999999999999999999999876544

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.58  E-value=0.019  Score=48.58  Aligned_cols=33  Identities=15%  Similarity=0.214  Sum_probs=30.5

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|+|||.|.+|..+|..+..-|.+|+.+++++
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   34 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ   34 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence            589999999999999999998999999998864

>PLN02272 glyceraldehyde-3-phosphate dehydrogenase

Probab=95.57  E-value=0.018  Score=51.44  Aligned_cols=29  Identities=31%  Similarity=0.378  Sum_probs=26.0

Q ss_pred             CEEEEEeCChHHHHHHHHHhh-cCCEEEEE
Q 045521           84 RSVGIIGLGRIGMAVAKRAEA-FGCFISYR  112 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~-fg~~V~~~  112 (204)
                      .+|||.|||+||+.++|.+.. ++++|+++
T Consensus        86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaI  115 (421)
T PLN02272         86 TKIGINGFGRIGRLVLRIATSRDDIEVVAV  115 (421)
T ss_pred             eEEEEECcCHHHHHHHHHHhhcCCcEEEEe
Confidence            499999999999999999875 89998874

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=95.56  E-value=0.022  Score=46.14  Aligned_cols=33  Identities=33%  Similarity=0.369  Sum_probs=29.3

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++++|+|.|+||..+|+++..-|-+|.+-+|..
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~   34 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRG   34 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCCeEEEecCCC
Confidence            589999999999999999999999998775543

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.51  E-value=0.038  Score=45.44  Aligned_cols=36  Identities=19%  Similarity=0.411  Sum_probs=32.3

Q ss_pred             ccCCCEEEEEeCC---hHHHHHHHHHhhcCCEEEEEcCC
Q 045521           80 KISGRSVGIIGLG---RIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        80 ~l~g~tvGIvG~G---~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      .+.||++.|.|-+   .||+++|+.|..-|++|+..+|.
T Consensus         4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~   42 (252)
T PRK06079          4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQN   42 (252)
T ss_pred             ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCc
Confidence            4789999999985   79999999999999999887765

>PRK06841 short chain dehydrogenase; Provisional

Probab=95.46  E-value=0.045  Score=44.61  Aligned_cols=37  Identities=30%  Similarity=0.393  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++.||++.|.|. |.||+.+|+.+...|++|+..+|+.
T Consensus        12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~   49 (255)
T PRK06841         12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSE   49 (255)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            578999999995 9999999999999999999888864

>PRK08862 short chain dehydrogenase; Provisional

Probab=95.45  E-value=0.038  Score=44.92  Aligned_cols=37  Identities=14%  Similarity=0.231  Sum_probs=32.8

Q ss_pred             ccCCCEEEEEeCC-hHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGLG-RIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~G-~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +++||++.|.|.+ .||+++|+.+...|++|+..+|+.
T Consensus         2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~   39 (227)
T PRK08862          2 DIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQ   39 (227)
T ss_pred             CCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            4789999999975 499999999999999999988864

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=95.44  E-value=0.058  Score=36.44  Aligned_cols=52  Identities=23%  Similarity=0.282  Sum_probs=39.9

Q ss_pred             EEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHH---HHHHHHcCCc
Q 045521           85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESE---LVSALLEDRL  141 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~a---L~~aL~~g~i  141 (204)
                      ++.|||-|.||-++|..++.+|.+|..+.+.+...     ...|++.   +.+.|++..+
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~-----~~~~~~~~~~~~~~l~~~gV   55 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL-----PGFDPDAAKILEEYLRKRGV   55 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS-----TTSSHHHHHHHHHHHHHTTE
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh-----hhcCHHHHHHHHHHHHHCCC
Confidence            57899999999999999999999999888876553     2245444   4556666544

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=95.42  E-value=0.038  Score=49.35  Aligned_cols=34  Identities=21%  Similarity=0.272  Sum_probs=31.5

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      ++|+|||+|.+|..+|..|..-|.+|+++|+++.
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~   37 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH   37 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence            6899999999999999999999999999998654

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.42  E-value=0.031  Score=49.96  Aligned_cols=37  Identities=22%  Similarity=0.364  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++.||++.|+|.|.+|..+|+.|...|++|.+.++..
T Consensus         2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~   38 (447)
T PRK02472          2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP   38 (447)
T ss_pred             CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            3679999999999999999999999999999988654

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.38  E-value=0.029  Score=49.93  Aligned_cols=35  Identities=20%  Similarity=0.316  Sum_probs=31.7

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..++|.|+|+|.+|..+|+.|+..|.+|.++|+..
T Consensus         2 ~~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~   36 (418)
T PRK00683          2 GLQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL   36 (418)
T ss_pred             CCCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            35789999999999999999999999999998754

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=95.36  E-value=0.031  Score=50.90  Aligned_cols=39  Identities=21%  Similarity=0.310  Sum_probs=35.3

Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +.++++++++|+|.|.+|+.++..+...|++|..++|+.
T Consensus       327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~  365 (477)
T PRK09310        327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTK  365 (477)
T ss_pred             CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            456789999999999999999999999999998888864

>PRK06392 homoserine dehydrogenase; Provisional

Probab=95.34  E-value=0.033  Score=48.30  Aligned_cols=55  Identities=25%  Similarity=0.384  Sum_probs=34.3

Q ss_pred             EEEEEeCChHHHHHHHHHhh--------cCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCc
Q 045521           85 SVGIIGLGRIGMAVAKRAEA--------FGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRL  141 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~--------fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i  141 (204)
                      +|+|+|||+||+.+++.+..        ++.+|.++..+....  +...=+|.+.+.+..++|.+
T Consensus         2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l--~~~~Gldl~~l~~~~~~g~l   64 (326)
T PRK06392          2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSY--YNERGLDIGKIISYKEKGRL   64 (326)
T ss_pred             EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcc--cCCcCCChHHHHHHHhcCcc
Confidence            79999999999999999865        677876654332110  00011455566665554433

>PRK08507 prephenate dehydrogenase; Validated

Probab=95.33  E-value=0.03  Score=47.03  Aligned_cols=33  Identities=27%  Similarity=0.378  Sum_probs=28.1

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcC--CEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFG--CFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg--~~V~~~~r~~  116 (204)
                      ++|+|||+|.+|+.+|+.++.-|  .+|++++++.
T Consensus         1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~   35 (275)
T PRK08507          1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNE   35 (275)
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCH
Confidence            37999999999999999998666  4788888764

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=95.33  E-value=0.029  Score=45.16  Aligned_cols=37  Identities=24%  Similarity=0.271  Sum_probs=33.3

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRA  115 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~  115 (204)
                      ..|.+++|.|+|+|.+|..+|+.|...|. ++..+|+.
T Consensus        17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             HHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            46999999999999999999999999998 67777765

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.32  E-value=0.028  Score=47.95  Aligned_cols=33  Identities=24%  Similarity=0.335  Sum_probs=30.2

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|+|||.|.+|..+|..+..-|.+|+.++++.
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~   37 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME   37 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            689999999999999999999999999998754

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=95.30  E-value=0.026  Score=47.97  Aligned_cols=32  Identities=25%  Similarity=0.400  Sum_probs=29.5

Q ss_pred             EEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +|||||+|++|+.+|+.+..-|.+|.++++++
T Consensus         2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~   33 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGP   33 (292)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            69999999999999999999999998888764

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.30  E-value=0.029  Score=46.64  Aligned_cols=33  Identities=24%  Similarity=0.272  Sum_probs=29.0

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcC---CEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFG---CFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg---~~V~~~~r~~  116 (204)
                      ++|+|||+|.||+.+++.+..-|   .+|..++|+.
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~   38 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSP   38 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCH
Confidence            57999999999999999998777   6788888864

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.27  E-value=0.036  Score=46.64  Aligned_cols=35  Identities=20%  Similarity=0.228  Sum_probs=29.7

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcC----CEEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFG----CFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg----~~V~~~~r~~  116 (204)
                      ..++|||||+|++|+.+++.+..-|    .+|.+++|+.
T Consensus         2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~   40 (279)
T PRK07679          2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSN   40 (279)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCC
Confidence            4579999999999999999998766    5788888864

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.25  E-value=0.039  Score=47.20  Aligned_cols=111  Identities=14%  Similarity=0.100  Sum_probs=66.3

Q ss_pred             ccccCCCEEEEEeCC-hHHHHHHHHHhhcCCEEEEEcCCCCCCCC----CC--------cceeCHHHHHHHHHcCCceEE
Q 045521           78 TTKISGRSVGIIGLG-RIGMAVAKRAEAFGCFISYRSRAEKPNTK----YK--------GALVDESELVSALLEDRLAAA  144 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G-~IG~~va~~~~~fg~~V~~~~r~~~~~~~----~~--------G~lvd~~aL~~aL~~g~i~ga  144 (204)
                      +.++.||+|+|||.| .+|+.+|.+|..-|+.|..+.+......+    .+        ...|+.+-    ++.|.   .
T Consensus       154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~e~~~~ADIVIsavg~~~~v~~~~----ik~Ga---i  226 (301)
T PRK14194        154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAKALCRQADIVVAAVGRPRLIDADW----LKPGA---V  226 (301)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHHHHHhcCCEEEEecCChhcccHhh----ccCCc---E
Confidence            568999999999996 99999999999999999988654432111    01        34444332    56664   4


Q ss_pred             EeeCCCCC-CCCC-CCcC---CCC-----ceEEcccCCCCcHHHHHHHHHHHHHHHHHHHc
Q 045521          145 VLDVFEHE-PQVP-EELF---GLE-----NVVLLPHAASGTEETRKATADIVIENLEACFL  195 (204)
Q Consensus       145 ~lDV~~~E-P~~~-~~l~---~~~-----nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~  195 (204)
                      .+||--+. +... ..+.   +.+     --.+||=-+|.-.-+..-+.+.+++..+++..
T Consensus       227 VIDvgin~~~~~g~~kl~GDvdf~~~~~~a~~iTPVPGGVGp~Tva~L~~N~~~a~~~~~~  287 (301)
T PRK14194        227 VIDVGINRIDDDGRSRLVGDVDFDSALPVVSAITPVPGGVGPMTIAFLMKNTVTAARLQAH  287 (301)
T ss_pred             EEEecccccCCCCCcceecccchHHHHhhcceecCCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence            67775332 1000 0111   111     24589877776554444444555554455443

>PRK06523 short chain dehydrogenase; Provisional

Probab=95.25  E-value=0.078  Score=43.38  Aligned_cols=59  Identities=15%  Similarity=0.173  Sum_probs=44.4

Q ss_pred             ccccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCCC-----CCcceeCHHHHHHHH
Q 045521           78 TTKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNTK-----YKGALVDESELVSAL  136 (204)
Q Consensus        78 ~~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~~-----~~G~lvd~~aL~~aL  136 (204)
                      ..+++||++.|.|. |.||+++++.+...|++|+..+|.......     +.+.+-|++++.+++
T Consensus         4 ~~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~D~~~~~~~~~~~   68 (260)
T PRK06523          4 FLELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPDDLPEGVEFVAADLTTAEGCAAVA   68 (260)
T ss_pred             CcCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhhhcCCceeEEecCCCCHHHHHHHH
Confidence            34689999999995 899999999999999999988876532211     126677777665443

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.23  E-value=0.033  Score=50.71  Aligned_cols=36  Identities=25%  Similarity=0.290  Sum_probs=32.9

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      .+.|++|.|+|+|.+|...++.|+..|++|.++|+.
T Consensus         9 ~~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~   44 (488)
T PRK03369          9 LLPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD   44 (488)
T ss_pred             ccCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            357899999999999999999999999999998864

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=95.20  E-value=0.034  Score=44.74  Aligned_cols=37  Identities=27%  Similarity=0.316  Sum_probs=33.4

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRA  115 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~  115 (204)
                      ..|..++|+|+|+|.+|..+|..|...|. +++.+|+.
T Consensus        17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            46899999999999999999999999999 58888765

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=95.17  E-value=0.05  Score=44.47  Aligned_cols=37  Identities=24%  Similarity=0.355  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+.||++.|.|. |.||+++++.|..-|++|+..+|+.
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~   44 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDP   44 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCH
Confidence            478999999995 9999999999999999999888864

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=95.16  E-value=0.028  Score=41.99  Aligned_cols=34  Identities=32%  Similarity=0.397  Sum_probs=28.3

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRA  115 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~  115 (204)
                      +.++|.|+|+|.+|..+++.|...|+ ++..+|..
T Consensus         1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence            36899999999999999999998898 57766654

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.11  E-value=0.036  Score=46.91  Aligned_cols=33  Identities=24%  Similarity=0.450  Sum_probs=30.6

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|+|||.|.+|..+|..+..-|.+|..|+++.
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA   37 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            689999999999999999999999999998864

>PLN02688 pyrroline-5-carboxylate reductase

Probab=95.11  E-value=0.035  Score=46.15  Aligned_cols=33  Identities=33%  Similarity=0.405  Sum_probs=28.1

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCC----EEEEE-cCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGC----FISYR-SRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~----~V~~~-~r~~  116 (204)
                      .+||+||+|++|+.+++.+..-|.    +|+++ +|+.
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~   38 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNP   38 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCH
Confidence            479999999999999999987776    78777 7754

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.10  E-value=0.039  Score=50.31  Aligned_cols=37  Identities=27%  Similarity=0.481  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++.+++|.|+|+|.+|..+|+.|+..|.+|.++|...
T Consensus         4 ~~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   40 (498)
T PRK02006          4 DLQGPMVLVLGLGESGLAMARWCARHGARLRVADTRE   40 (498)
T ss_pred             ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence            3678999999999999999999999999999988653

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.10  E-value=0.038  Score=49.74  Aligned_cols=36  Identities=28%  Similarity=0.420  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      ++.|++|.|+|+|.+|..+|+.|+..|.+|.++|..
T Consensus         6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~   41 (460)
T PRK01390          6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDN   41 (460)
T ss_pred             ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCC
Confidence            478999999999999999999999999999999865

>PRK08818 prephenate dehydrogenase; Provisional

Probab=95.09  E-value=0.039  Score=48.66  Aligned_cols=36  Identities=25%  Similarity=0.295  Sum_probs=31.5

Q ss_pred             cCCCEEEEEeC-ChHHHHHHHHHhh-cCCEEEEEcCCC
Q 045521           81 ISGRSVGIIGL-GRIGMAVAKRAEA-FGCFISYRSRAE  116 (204)
Q Consensus        81 l~g~tvGIvG~-G~IG~~va~~~~~-fg~~V~~~~r~~  116 (204)
                      +.-.||+|||+ |.||+.+|+.++. ++.+|+++|+..
T Consensus         2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d   39 (370)
T PRK08818          2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPAD   39 (370)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence            35679999999 9999999999985 699999999853

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.07  E-value=0.04  Score=47.39  Aligned_cols=34  Identities=29%  Similarity=0.411  Sum_probs=30.9

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .++|+|||.|.+|..+|..|..-|.+|..|+|+.
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~   37 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRP   37 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            3589999999999999999999999999999864

>PRK06398 aldose dehydrogenase; Validated

Probab=95.04  E-value=0.088  Score=43.34  Aligned_cols=58  Identities=16%  Similarity=0.215  Sum_probs=44.9

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCCC---CCcceeCHHHHHHHHH
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNTK---YKGALVDESELVSALL  137 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~---~~G~lvd~~aL~~aL~  137 (204)
                      +++||++.|.| -|.||+++|+.+..-|++|+..+|+......   +...+-|++++.++++
T Consensus         3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~D~~~~~~i~~~~~   64 (258)
T PRK06398          3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPSYNDVDYFKVDVSNKEQVIKGID   64 (258)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCccccCceEEEEccCCCHHHHHHHHH
Confidence            57899999999 4799999999999999999998886543221   2266777777666554

>PRK12828 short chain dehydrogenase; Provisional

Probab=95.02  E-value=0.089  Score=42.08  Aligned_cols=58  Identities=28%  Similarity=0.327  Sum_probs=43.5

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCC---------C---CCcceeCHHHHHHHHH
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNT---------K---YKGALVDESELVSALL  137 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~---------~---~~G~lvd~~aL~~aL~  137 (204)
                      .+++||+.|.| .|.||+.+++.+..-|.+|+..+|+..+..         .   ..+.+-|++++.++++
T Consensus         4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   74 (239)
T PRK12828          4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVD   74 (239)
T ss_pred             CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHH
Confidence            47899999999 499999999999888999999988653210         0   1156667777766555

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.02  E-value=0.043  Score=49.81  Aligned_cols=37  Identities=19%  Similarity=0.265  Sum_probs=34.1

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      ..+.+++|.|+|+|.+|+.+|+.|...|++|.++|+.
T Consensus        11 ~~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~   47 (473)
T PRK00141         11 PQELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDN   47 (473)
T ss_pred             ccccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence            3578999999999999999999999999999999975

>PRK08374 homoserine dehydrogenase; Provisional

Probab=94.97  E-value=0.13  Score=44.78  Aligned_cols=53  Identities=21%  Similarity=0.239  Sum_probs=33.5

Q ss_pred             CEEEEEeCChHHHHHHHHHhh--------cC--CEEEEEcCCCCCCCCCCcceeCHHHHHHHHHc
Q 045521           84 RSVGIIGLGRIGMAVAKRAEA--------FG--CFISYRSRAEKPNTKYKGALVDESELVSALLE  138 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~--------fg--~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~  138 (204)
                      -+|+|+|||++|+.+++.+..        +|  .+|.++..+....  |.-.=+|.+.+.+..++
T Consensus         3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~--~~~~Gid~~~l~~~~~~   65 (336)
T PRK08374          3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTI--WLPEDIDLREAKEVKEN   65 (336)
T ss_pred             eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccc--cCCCCCChHHHHHhhhc
Confidence            489999999999999998865        56  6776654322110  00011556666665555

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=94.96  E-value=0.083  Score=49.24  Aligned_cols=60  Identities=18%  Similarity=0.272  Sum_probs=46.3

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCC-C-----CCcceeCHHHHHHHHHc
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNT-K-----YKGALVDESELVSALLE  138 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~-~-----~~G~lvd~~aL~~aL~~  138 (204)
                      ..+..|||||||-|..|+.++..++.+|.+|+.+++.+.... .     +.++.-|.++|.+..++
T Consensus        18 ~~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~   83 (577)
T PLN02948         18 HGVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKR   83 (577)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHH
Confidence            357899999999999999999999999999999887654211 1     11666777777766554

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=94.96  E-value=0.043  Score=44.56  Aligned_cols=33  Identities=27%  Similarity=0.325  Sum_probs=29.4

Q ss_pred             CEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|+||| .|++|+.+++.+..-|.+|..++|+.
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~   34 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL   34 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence            3799997 99999999999998899998888864

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=94.93  E-value=0.034  Score=42.86  Aligned_cols=29  Identities=34%  Similarity=0.373  Sum_probs=24.6

Q ss_pred             EEEEEeCChHHHHHHHHHh-hcCCEEEEEc
Q 045521           85 SVGIIGLGRIGMAVAKRAE-AFGCFISYRS  113 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~-~fg~~V~~~~  113 (204)
                      +|||-|||+|||.+++.+. .-.++|.+++
T Consensus         2 kVgINGfGRIGR~v~r~~~~~~~~evvaIn   31 (151)
T PF00044_consen    2 KVGINGFGRIGRLVLRAALDQPDIEVVAIN   31 (151)
T ss_dssp             EEEEESTSHHHHHHHHHHHTSTTEEEEEEE
T ss_pred             EEEEECCCcccHHHHHhhcccceEEEEEEe
Confidence            7999999999999999986 5667777664

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....

>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein

Probab=94.91  E-value=0.074  Score=46.18  Aligned_cols=54  Identities=19%  Similarity=0.270  Sum_probs=42.3

Q ss_pred             EEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCC------CCcceeCHHHHHHHHHc
Q 045521           85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTK------YKGALVDESELVSALLE  138 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~------~~G~lvd~~aL~~aL~~  138 (204)
                      ||||||-|..|+.+++.++.+|.+|+.++..+.....      +.+..-|.+++.+..+.
T Consensus         1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~   60 (352)
T TIGR01161         1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAES   60 (352)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhh
Confidence            6999999999999999999999999999876532211      12666788888777664

Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=94.88  E-value=0.08  Score=47.29  Aligned_cols=33  Identities=18%  Similarity=0.282  Sum_probs=30.2

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +++.|+|+|.+|+.+++.|...|.+|.++++++
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~   33 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDE   33 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            479999999999999999999999999998864

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=94.87  E-value=0.15  Score=46.82  Aligned_cols=37  Identities=24%  Similarity=0.351  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ...+.+|.|+|.|.||...+..++.+|++|..+|+++
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~  198 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP  198 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4579999999999999999999999999998888754

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=94.86  E-value=0.059  Score=45.70  Aligned_cols=39  Identities=23%  Similarity=0.197  Sum_probs=34.7

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCCC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAEK  117 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~~  117 (204)
                      ..+.+++|.|+|.|..|++++..|...|+ +|..++|+..
T Consensus       123 ~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~  162 (284)
T PRK12549        123 PDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPA  162 (284)
T ss_pred             cCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence            35788999999999999999999999998 6889999753

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.84  E-value=0.037  Score=46.56  Aligned_cols=33  Identities=21%  Similarity=0.449  Sum_probs=30.2

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|+|||.|.+|..+|..+...|.+|+.+++++
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~   36 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD   36 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence            589999999999999999999999999998754

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=94.83  E-value=0.041  Score=50.02  Aligned_cols=34  Identities=29%  Similarity=0.429  Sum_probs=31.4

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .+|||||+|.+|+.+|+.|..-|.+|.+|+|++.
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~   35 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE   35 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            4799999999999999999999999999999764

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=94.83  E-value=0.063  Score=44.57  Aligned_cols=33  Identities=27%  Similarity=0.420  Sum_probs=30.8

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +++|.||+|+.|..++++|.--|-+|++||+.+
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~   33 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQ   33 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhCCCeEEEEcCCH
Confidence            478999999999999999999999999999865

>PLN00203 glutamyl-tRNA reductase

Probab=94.82  E-value=0.043  Score=50.44  Aligned_cols=37  Identities=27%  Similarity=0.450  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~  116 (204)
                      ++.+++|+|||.|.+|+.+++.|...|+ +|+.++|+.
T Consensus       263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~  300 (519)
T PLN00203        263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSE  300 (519)
T ss_pred             CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            3789999999999999999999999997 688888874

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.82  E-value=0.041  Score=46.69  Aligned_cols=34  Identities=24%  Similarity=0.456  Sum_probs=31.1

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      ++|||||.|.+|..+|..+...|.+|+.+|+++.
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   39 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE   39 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            4899999999999999999999999999988754

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=94.79  E-value=0.046  Score=44.72  Aligned_cols=36  Identities=22%  Similarity=0.331  Sum_probs=31.2

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSR  114 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r  114 (204)
                      ..|.+++|.|+|+|.+|..+|+.|...|. ++..+|.
T Consensus        17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~   53 (228)
T cd00757          17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDD   53 (228)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            46899999999999999999999999998 4555554

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=94.76  E-value=0.041  Score=50.30  Aligned_cols=33  Identities=24%  Similarity=0.113  Sum_probs=30.5

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|||||.|.+|..+|..+..-|.+|..||+++
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~   37 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP   37 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            589999999999999999998899999999864

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=94.76  E-value=0.051  Score=46.31  Aligned_cols=33  Identities=21%  Similarity=0.308  Sum_probs=30.0

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|+|||.|.+|..+|..+..-|.+|..++|++
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~   34 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDP   34 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            479999999999999999999999999998864

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=94.72  E-value=0.044  Score=46.61  Aligned_cols=35  Identities=23%  Similarity=0.348  Sum_probs=32.6

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKP  118 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~  118 (204)
                      .+||+||+|..|+.+|++|..-|..|.+|+|++.+
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~k   35 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEK   35 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhh
Confidence            48999999999999999999999999999998755

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=94.70  E-value=0.033  Score=49.19  Aligned_cols=63  Identities=27%  Similarity=0.359  Sum_probs=47.2

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCC------CCcceeCHHH-HHHHHHcCCceEEEeeC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTK------YKGALVDESE-LVSALLEDRLAAAVLDV  148 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~------~~G~lvd~~a-L~~aL~~g~i~ga~lDV  148 (204)
                      .|+||+|+|-||.-+|-.+..-|.+|+++|-..+....      +.-+ ++.+. |.++..+|+++ |..|.
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e-~~~~~~v~~~v~~g~lr-aTtd~   79 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEE-PDLDEVVKEAVESGKLR-ATTDP   79 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeec-CcHHHHHHHHHhcCCce-EecCh
Confidence            89999999999999999999999999999875532211      1122 34455 66788899997 66554

>PRK07890 short chain dehydrogenase; Provisional

Probab=94.69  E-value=0.078  Score=43.21  Aligned_cols=36  Identities=25%  Similarity=0.408  Sum_probs=32.8

Q ss_pred             cCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           81 ISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        81 l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +.+|++.|.|- |.||+.+|+.+..-|++|+..+|+.
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~   39 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTA   39 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCH
Confidence            67899999995 8999999999999999999988865

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.68  E-value=0.068  Score=45.44  Aligned_cols=104  Identities=13%  Similarity=0.084  Sum_probs=62.2

Q ss_pred             ccccCCCEEEEEeCChH-HHHHHHHHhhcCCEEEEEcCCCCCCC------CCC------cceeCHHHHHHHHHcCCceEE
Q 045521           78 TTKISGRSVGIIGLGRI-GMAVAKRAEAFGCFISYRSRAEKPNT------KYK------GALVDESELVSALLEDRLAAA  144 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~I-G~~va~~~~~fg~~V~~~~r~~~~~~------~~~------G~lvd~~aL~~aL~~g~i~ga  144 (204)
                      +.++.||++.|||.|.| |+-++.+|...|+.|+.+....+...      +..      -.+++.    +.++.|.   .
T Consensus       153 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~~l~~~~~~ADIVV~avG~~~~i~~----~~ik~ga---v  225 (285)
T PRK14189        153 GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTRDLAAHTRQADIVVAAVGKRNVLTA----DMVKPGA---T  225 (285)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCCCHHHHhhhCCEEEEcCCCcCccCH----HHcCCCC---E
Confidence            45789999999999999 99999999999999987654332111      100      344554    5566664   4


Q ss_pred             EeeCCCCC-C---CCCC-Cc--CCCCceEEcccCCCCcHHHHHHHHHHHHH
Q 045521          145 VLDVFEHE-P---QVPE-EL--FGLENVVLLPHAASGTEETRKATADIVIE  188 (204)
Q Consensus       145 ~lDV~~~E-P---~~~~-~l--~~~~nvilTPH~a~~t~~~~~~~~~~~~~  188 (204)
                      .+||--+. +   +..+ .+  ...---.+||=-+|--.-+..-+.+.+++
T Consensus       226 VIDVGin~~~~gkl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~Ll~N~~~  276 (285)
T PRK14189        226 VIDVGMNRDDAGKLCGDVDFAGVKEVAGYITPVPGGVGPMTITMLLVNTIE  276 (285)
T ss_pred             EEEccccccCCCCeeCCccHHHHHhhceEecCCCCCchHHHHHHHHHHHHH
Confidence            67775432 1   1011 11  11113468998777655443344344433

>PRK06949 short chain dehydrogenase; Provisional

Probab=94.67  E-value=0.1  Score=42.55  Aligned_cols=38  Identities=18%  Similarity=0.270  Sum_probs=34.0

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..+.+|++.|.|- |.||+.+++.+...|++|+..+|+.
T Consensus         5 ~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~   43 (258)
T PRK06949          5 INLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRV   43 (258)
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3578999999995 9999999999999999999888764

>PRK08655 prephenate dehydrogenase; Provisional

Probab=94.66  E-value=0.051  Score=48.89  Aligned_cols=33  Identities=24%  Similarity=0.306  Sum_probs=30.0

Q ss_pred             CEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|+||| +|.||+.+|+.++..|.+|.+++|+.
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~   34 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDP   34 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            4799997 99999999999999999999998864

>PRK08339 short chain dehydrogenase; Provisional

Probab=94.65  E-value=0.11  Score=42.96  Aligned_cols=37  Identities=27%  Similarity=0.269  Sum_probs=33.0

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+.||++.|.|. |.||+++|+.|...|++|+..+|+.
T Consensus         5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~   42 (263)
T PRK08339          5 DLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNE   42 (263)
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence            478999999996 6899999999999999999888764

>PRK05867 short chain dehydrogenase; Provisional

Probab=94.65  E-value=0.086  Score=43.07  Aligned_cols=37  Identities=24%  Similarity=0.267  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+.||++.|.|. |.||+++++.|...|.+|+..+|+.
T Consensus         6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~   43 (253)
T PRK05867          6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHL   43 (253)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCH
Confidence            478999999996 8999999999999999999888764

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.64  E-value=0.051  Score=45.90  Aligned_cols=33  Identities=18%  Similarity=0.337  Sum_probs=30.3

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|+|||.|.+|..+|..+..-|.+|..++++.
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD   36 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            589999999999999999998899999998764

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.63  E-value=0.067  Score=48.41  Aligned_cols=84  Identities=18%  Similarity=0.106  Sum_probs=53.7

Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCC
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHEPQVPE  157 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~  157 (204)
                      +..+.+++|.|+|.|.+|.++|+.|+..|.+|.++++....         ..+.+.+.|++..+.     ++..+...  
T Consensus        11 ~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~---------~~~~~~~~l~~~gv~-----~~~~~~~~--   74 (480)
T PRK01438         11 HSDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDE---------RHRALAAILEALGAT-----VRLGPGPT--   74 (480)
T ss_pred             ccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchh---------hhHHHHHHHHHcCCE-----EEECCCcc--
Confidence            34678999999999999999999999999999998865321         112344455543222     21111100  


Q ss_pred             CcCCCCceEEcccCCCCcHH
Q 045521          158 ELFGLENVVLLPHAASGTEE  177 (204)
Q Consensus       158 ~l~~~~nvilTPH~a~~t~~  177 (204)
                      .....+-||++|-+-..+..
T Consensus        75 ~~~~~D~Vv~s~Gi~~~~~~   94 (480)
T PRK01438         75 LPEDTDLVVTSPGWRPDAPL   94 (480)
T ss_pred             ccCCCCEEEECCCcCCCCHH
Confidence            12234667788877666654

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=94.62  E-value=0.062  Score=45.98  Aligned_cols=34  Identities=26%  Similarity=0.377  Sum_probs=30.4

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .++|+|||.|.||..+|.+|...|.+|..+.|..
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            4689999999999999999999999998887753

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.61  E-value=0.069  Score=47.85  Aligned_cols=82  Identities=15%  Similarity=0.167  Sum_probs=53.0

Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCcC
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELF  160 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l~  160 (204)
                      +.++++.|+|.|.+|..+|+.|...|.+|.++|....+.            ..+.|++-   +.++.++..+. +..-+.
T Consensus         3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~------------~~~~l~~~---~~gi~~~~g~~-~~~~~~   66 (445)
T PRK04308          3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPE------------RVAQIGKM---FDGLVFYTGRL-KDALDN   66 (445)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCch------------hHHHHhhc---cCCcEEEeCCC-CHHHHh
Confidence            678999999999999999999999999999988754321            12234331   01122222211 011123


Q ss_pred             CCCceEEcccCCCCcHHH
Q 045521          161 GLENVVLLPHAASGTEET  178 (204)
Q Consensus       161 ~~~nvilTPH~a~~t~~~  178 (204)
                      +.+-|+.||++.....+.
T Consensus        67 ~~d~vv~spgi~~~~p~~   84 (445)
T PRK04308         67 GFDILALSPGISERQPDI   84 (445)
T ss_pred             CCCEEEECCCCCCCCHHH
Confidence            567899999999766543

>PLN02858 fructose-bisphosphate aldolase

Probab=94.56  E-value=0.042  Score=56.03  Aligned_cols=36  Identities=19%  Similarity=0.286  Sum_probs=32.8

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      ..++||+||+|++|..+|+.|...|.+|.+|+|++.
T Consensus       323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~  358 (1378)
T PLN02858        323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKP  358 (1378)
T ss_pred             CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            358999999999999999999999999999998753

>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2

Probab=94.55  E-value=0.12  Score=45.17  Aligned_cols=60  Identities=20%  Similarity=0.292  Sum_probs=47.0

Q ss_pred             EEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCC-C-----CCcceeCHHHHHHHHHcCCceEE
Q 045521           85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNT-K-----YKGALVDESELVSALLEDRLAAA  144 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~-~-----~~G~lvd~~aL~~aL~~g~i~ga  144 (204)
                      +|||+|-|..|+.+++.++.+|.+|+.+++.+.... .     +.+...|.++|.+..++.++-+.
T Consensus         1 kililG~g~~~~~l~~aa~~~G~~v~~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~v   66 (380)
T TIGR01142         1 RVLLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVINMLDGDALRAVIEREKPDYI   66 (380)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhhhCceEEEcCCCCHHHHHHHHHHhCCCEE
Confidence            589999999999999999999999999888654211 1     11566789999998887666543

This enzyme is an alternative to PurN (TIGR00639)

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=94.53  E-value=0.042  Score=48.88  Aligned_cols=34  Identities=21%  Similarity=0.394  Sum_probs=30.8

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      ++|+|||+|.+|..+|..+..-|.+|++++++..
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~   34 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE   34 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence            3799999999999999999999999999998653

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=94.53  E-value=0.057  Score=46.98  Aligned_cols=37  Identities=30%  Similarity=0.380  Sum_probs=32.9

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRA  115 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~  115 (204)
                      ..|++++|.|||+|.+|..+|+.|...|. ++..+|+.
T Consensus        20 ~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D   57 (338)
T PRK12475         20 RKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRD   57 (338)
T ss_pred             HhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            46999999999999999999999999998 67777764

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.49  E-value=0.089  Score=43.36  Aligned_cols=37  Identities=19%  Similarity=0.328  Sum_probs=32.8

Q ss_pred             ccCCCEEEEEeC---ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL---GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~---G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+.||++.|.|.   +.||+++|+.+..-|++|+..+|+.
T Consensus         4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~   43 (256)
T PRK07889          4 LLEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGR   43 (256)
T ss_pred             cccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCcc
Confidence            478999999996   7999999999999999998887653

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=94.49  E-value=0.074  Score=45.19  Aligned_cols=38  Identities=18%  Similarity=0.327  Sum_probs=34.2

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcCCC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r~~  116 (204)
                      ..+.+|++.|+|.|.+|++++..|...|++ |..++|+.
T Consensus       122 ~~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        122 VDVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            357899999999999999999999999997 98888875

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.47  E-value=0.077  Score=45.15  Aligned_cols=102  Identities=16%  Similarity=0.135  Sum_probs=63.0

Q ss_pred             ccccCCCEEEEEeCCh-HHHHHHHHHhhcCCEEEEEcCCCCCCCC----CC--------cceeCHHHHHHHHHcCCceEE
Q 045521           78 TTKISGRSVGIIGLGR-IGMAVAKRAEAFGCFISYRSRAEKPNTK----YK--------GALVDESELVSALLEDRLAAA  144 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~-IG~~va~~~~~fg~~V~~~~r~~~~~~~----~~--------G~lvd~~aL~~aL~~g~i~ga  144 (204)
                      +.+|+||++.|||.|. +|+-+|.+|...|++|+.+.++......    .+        ..+|..+    .++.|   ..
T Consensus       153 ~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVIsAvg~p~~i~~~----~vk~g---av  225 (286)
T PRK14175        153 DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMASYLKDADVIVSAVGKPGLVTKD----VVKEG---AV  225 (286)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHHHHhhCCEEEECCCCCcccCHH----HcCCC---cE
Confidence            4579999999999999 9999999999999999776654322111    11        3356664    35666   46


Q ss_pred             EeeCCCCCCCCCCCcC--------CCCceEEcccCCCCcHHHHHHHHHHHH
Q 045521          145 VLDVFEHEPQVPEELF--------GLENVVLLPHAASGTEETRKATADIVI  187 (204)
Q Consensus       145 ~lDV~~~EP~~~~~l~--------~~~nvilTPH~a~~t~~~~~~~~~~~~  187 (204)
                      .+||--+. .....+.        .----.+||=-+|.-.-+...+.+.++
T Consensus       226 VIDvGi~~-~~~gkl~GDvd~~~~~~~a~~iTPVPGGVGp~T~a~L~~n~~  275 (286)
T PRK14175        226 IIDVGNTP-DENGKLKGDVDYDAVKEIAGAITPVPGGVGPLTITMVLNNTL  275 (286)
T ss_pred             EEEcCCCc-CCCCCeecCccHHHHHhhccCcCCCCCCCHHHHHHHHHHHHH
Confidence            78886543 1111111        011245899877776544433333333

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=94.46  E-value=0.031  Score=41.84  Aligned_cols=36  Identities=33%  Similarity=0.469  Sum_probs=28.4

Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcCCEEEE-EcCCC
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISY-RSRAE  116 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~-~~r~~  116 (204)
                      -...+|||||.|++|+.+++.|+.-|.+|.. ++|+.
T Consensus         8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~   44 (127)
T PF10727_consen    8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSP   44 (127)
T ss_dssp             ----EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCc
Confidence            3467999999999999999999999999865 46653

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=94.46  E-value=0.042  Score=50.19  Aligned_cols=33  Identities=27%  Similarity=0.387  Sum_probs=30.8

Q ss_pred             EEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      +||+||+|..|+.+|+.+..-|.+|.+|+|+..
T Consensus         8 ~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~   40 (493)
T PLN02350          8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS   40 (493)
T ss_pred             CEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHH
Confidence            699999999999999999999999999999753

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=94.44  E-value=0.085  Score=44.23  Aligned_cols=38  Identities=26%  Similarity=0.221  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      ...+++++|+|.|.+|+.++..+...|.+|..++|+..
T Consensus       114 ~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~  151 (270)
T TIGR00507       114 LRPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVS  151 (270)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            35689999999999999999999999999999988753

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=94.43  E-value=0.062  Score=45.55  Aligned_cols=32  Identities=31%  Similarity=0.539  Sum_probs=27.3

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR  114 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r  114 (204)
                      -++|+|+|+|.||+.+|+.++.-|..|..+++
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~   34 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGR   34 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEee
Confidence            47899999999999999999998888744443

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=94.42  E-value=0.075  Score=41.35  Aligned_cols=37  Identities=22%  Similarity=0.350  Sum_probs=31.1

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      ..+...+|.|+|.|++|+..++.|+++|++|..++..
T Consensus        16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~   52 (168)
T PF01262_consen   16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER   52 (168)
T ss_dssp             TEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred             CCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCC
Confidence            4577899999999999999999999999999988765

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=94.41  E-value=0.094  Score=45.16  Aligned_cols=78  Identities=17%  Similarity=0.089  Sum_probs=48.9

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCC--EEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCc
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGC--FISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEEL  159 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~--~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l  159 (204)
                      ++++|+|||.|+||..+|-.+...|.  ++..+|.....   ..|...|.++....+ . +..... +-       ...+
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~---~~g~~~Dl~~~~~~~-~-~~~i~~-~~-------~~~~   71 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEK---AEGDAMDLSHAVPFT-S-PTKIYA-GD-------YSDC   71 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCch---hHHHHHHHHhhcccc-C-CeEEEe-CC-------HHHh
Confidence            57899999999999999999987777  78888875322   114444444444222 1 121111 11       1246


Q ss_pred             CCCCceEEcccCC
Q 045521          160 FGLENVVLLPHAA  172 (204)
Q Consensus       160 ~~~~nvilTPH~a  172 (204)
                      .+.+=||+|....
T Consensus        72 ~~adivIitag~~   84 (315)
T PRK00066         72 KDADLVVITAGAP   84 (315)
T ss_pred             CCCCEEEEecCCC
Confidence            6677788887664

>PRK08265 short chain dehydrogenase; Provisional

Probab=94.38  E-value=0.13  Score=42.35  Aligned_cols=37  Identities=24%  Similarity=0.258  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+++|++.|.|. |.||+++|+.+...|++|+..+|+.
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~   40 (261)
T PRK08265          3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDA   40 (261)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            478999999995 9999999999999999999988865

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=94.36  E-value=0.068  Score=45.02  Aligned_cols=33  Identities=21%  Similarity=0.270  Sum_probs=28.0

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcC----CEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFG----CFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg----~~V~~~~r~~  116 (204)
                      .+|+|||+|++|+.+++.+..-|    .+|..++|+.
T Consensus         2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~   38 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSK   38 (277)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCc
Confidence            47999999999999999998776    5788887753

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=94.33  E-value=0.18  Score=41.31  Aligned_cols=38  Identities=29%  Similarity=0.287  Sum_probs=34.1

Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHHhhcCCE---EEEEcCC
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCF---ISYRSRA  115 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~---V~~~~r~  115 (204)
                      +.+++++++.|+|.|..|+.+|+.+...|++   |..++|+
T Consensus        20 g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          20 GKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             CCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            3468999999999999999999999999985   8888887

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK07831 short chain dehydrogenase; Provisional

Probab=94.33  E-value=0.1  Score=42.78  Aligned_cols=37  Identities=30%  Similarity=0.358  Sum_probs=32.6

Q ss_pred             ccCCCEEEEEeC-C-hHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-G-RIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G-~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+.+|++.|.|- | .||+++++.+...|++|+..+|..
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~   52 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHE   52 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCH
Confidence            467999999996 6 699999999999999998887754

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=94.32  E-value=0.065  Score=45.16  Aligned_cols=33  Identities=21%  Similarity=0.303  Sum_probs=29.5

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|+|+|.|.+|..+|..|..-|.+|..++|+.
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~   33 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRG   33 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence            369999999999999999998899999888743

>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]

Probab=94.31  E-value=0.059  Score=46.53  Aligned_cols=31  Identities=32%  Similarity=0.302  Sum_probs=26.9

Q ss_pred             CEEEEEeCChHHHHHHHHHhhc--CCEEEEEcC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAF--GCFISYRSR  114 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~f--g~~V~~~~r  114 (204)
                      -+|||=|||+|||.+++.+..-  .|+|+++..
T Consensus         2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd   34 (335)
T COG0057           2 IKVAINGFGRIGRLVARAALERDGDIEVVAIND   34 (335)
T ss_pred             cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEec
Confidence            3799999999999999999865  499988765

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=94.27  E-value=0.061  Score=51.35  Aligned_cols=33  Identities=33%  Similarity=0.338  Sum_probs=29.7

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcC--CEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFG--CFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg--~~V~~~~r~~  116 (204)
                      ++|+|||+|.+|+.+++.++..|  .+|++++++.
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~   38 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRA   38 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECCh
Confidence            78999999999999999999887  5799898864

>PRK07680 late competence protein ComER; Validated

Probab=94.23  E-value=0.082  Score=44.28  Aligned_cols=32  Identities=22%  Similarity=0.443  Sum_probs=27.7

Q ss_pred             EEEEEeCChHHHHHHHHHhhcC----CEEEEEcCCC
Q 045521           85 SVGIIGLGRIGMAVAKRAEAFG----CFISYRSRAE  116 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~fg----~~V~~~~r~~  116 (204)
                      +|||||+|++|+.+++.+..-|    .+|.+++|+.
T Consensus         2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~   37 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTP   37 (273)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCH
Confidence            6999999999999999998777    3688888864

>PRK06125 short chain dehydrogenase; Provisional

Probab=94.20  E-value=0.18  Score=41.23  Aligned_cols=37  Identities=32%  Similarity=0.496  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+.||++.|.|. |.||+.+++.+...|++|+..+|+.
T Consensus         4 ~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~   41 (259)
T PRK06125          4 HLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDA   41 (259)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence            478999999997 7899999999999999999888764

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=94.17  E-value=0.22  Score=44.53  Aligned_cols=59  Identities=24%  Similarity=0.291  Sum_probs=44.1

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCCCCCC----CCC-cceeCHHHHHHHHHc
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAEKPNT----KYK-GALVDESELVSALLE  138 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~~~~~----~~~-G~lvd~~aL~~aL~~  138 (204)
                      .+.|+++.|+|.|.+|+.+++.|...|. +|+.++|+.....    .+. +..+..+++.+.|.+
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~  242 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKK  242 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhcc
Confidence            5889999999999999999999999996 6888888754211    122 455666666666654

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=94.14  E-value=0.092  Score=44.23  Aligned_cols=34  Identities=21%  Similarity=0.296  Sum_probs=28.3

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCC----EEEEEcCCC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGC----FISYRSRAE  116 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~----~V~~~~r~~  116 (204)
                      .++|||||+|++|+.+++-+..-|.    +|++++|+.
T Consensus         2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~   39 (272)
T PRK12491          2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNV   39 (272)
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCH
Confidence            3589999999999999999976553    688888764

>PRK07062 short chain dehydrogenase; Provisional

Probab=94.13  E-value=0.14  Score=42.12  Aligned_cols=38  Identities=24%  Similarity=0.332  Sum_probs=34.0

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..++||++.|.|. |.||+++++.+..-|++|+..+|+.
T Consensus         4 ~~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~   42 (265)
T PRK07062          4 IQLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDE   42 (265)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCH
Confidence            3588999999996 6899999999999999999888864

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=94.13  E-value=0.15  Score=47.89  Aligned_cols=71  Identities=17%  Similarity=0.303  Sum_probs=53.9

Q ss_pred             CcEEEeCC-CCCchhHHHHHHHHHHHHHhhHHHhcCCCC--CCccccccCCCEEEEEeCChHHHHHHHHHhhcCCE-EEE
Q 045521           36 GIQVTNTP-DVLTDDVADAAIGLTLAVLRRFVRSEDGEM--GYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCF-ISY  111 (204)
Q Consensus        36 gI~v~n~~-~~~~~~vAE~~l~~~L~~~R~~~~~~~w~~--~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~  111 (204)
                      +-++.+-. -.....+||.++-|=|.|+|       |.-  +.. -..|++.+|.|+|+|.+|..+|+.|.+.|.. ++.
T Consensus       296 ~pr~~dL~~~mdP~~la~~avdlnlkLmk-------WRllP~l~-~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~Itl  367 (664)
T TIGR01381       296 QPISVDLSKEFDPKRLAERSVDLNLKLMK-------WRLHPDLQ-LERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITF  367 (664)
T ss_pred             CceEechhhhcCHHHHHHHHHHHHHHHHh-------hhcCChhh-HHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEE
Confidence            34555533 45578899999999999887       552  111 2568999999999999999999999999985 555


Q ss_pred             EcC
Q 045521          112 RSR  114 (204)
Q Consensus       112 ~~r  114 (204)
                      +|.
T Consensus       368 VD~  370 (664)
T TIGR01381       368 VDN  370 (664)
T ss_pred             EcC
Confidence            543

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=94.13  E-value=0.055  Score=49.15  Aligned_cols=33  Identities=27%  Similarity=0.486  Sum_probs=30.2

Q ss_pred             EEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .|||||+|.+|+.+|+.+..-|.+|.+|+|++.
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~   33 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPE   33 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            389999999999999999999999999998753

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=94.12  E-value=0.099  Score=45.50  Aligned_cols=38  Identities=29%  Similarity=0.291  Sum_probs=33.8

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~  116 (204)
                      .++.++++.|||.|.+|+.+++.|..-|. +|+..+|+.
T Consensus       170 ~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~  208 (338)
T PRK00676        170 QKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQ  208 (338)
T ss_pred             CCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            35899999999999999999999999995 588888874

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=94.11  E-value=0.077  Score=41.06  Aligned_cols=62  Identities=24%  Similarity=0.287  Sum_probs=47.2

Q ss_pred             EEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCC---C---CCcceeCHHHHHHHHHcCCceEEEeeCCC
Q 045521           86 VGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNT---K---YKGALVDESELVSALLEDRLAAAVLDVFE  150 (204)
Q Consensus        86 vGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~---~---~~G~lvd~~aL~~aL~~g~i~ga~lDV~~  150 (204)
                      |.|+| .|.+|+.+++.|..-|.+|....|++.+..   .   ..|.+-|.+++.++|+.-.   +.+++..
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~~~d---~vi~~~~   69 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALKGAD---AVIHAAG   69 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHTTSS---EEEECCH
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhhhcc---hhhhhhh
Confidence            57899 599999999999999999999998865422   1   1188889999999998422   4455553

...

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=94.11  E-value=0.16  Score=41.26  Aligned_cols=41  Identities=20%  Similarity=0.233  Sum_probs=37.5

Q ss_pred             ccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           76 KLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        76 ~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +...+|.||+|.|||-|.+|.+=++.+...|++|+.++++.
T Consensus         5 Pl~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~   45 (210)
T COG1648           5 PLFLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEF   45 (210)
T ss_pred             ceEEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCc
Confidence            44568999999999999999999999999999999998875

>PRK08589 short chain dehydrogenase; Validated

Probab=94.07  E-value=0.17  Score=41.98  Aligned_cols=36  Identities=22%  Similarity=0.244  Sum_probs=32.9

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      .+.||++.|.|. |.||+++|+.+..-|++|+..+|+
T Consensus         3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~   39 (272)
T PRK08589          3 RLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA   39 (272)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            478999999996 889999999999999999988876

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=94.05  E-value=0.074  Score=45.79  Aligned_cols=33  Identities=27%  Similarity=0.435  Sum_probs=29.9

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|+|||.|.+|..+|..|..-|.+|..++|+.
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~   35 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR   35 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence            579999999999999999998899999988753

>PRK06139 short chain dehydrogenase; Provisional

Probab=94.03  E-value=0.13  Score=44.37  Aligned_cols=38  Identities=29%  Similarity=0.329  Sum_probs=34.0

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..+.+|++.|.|. |.||+++|+.+..-|++|+..+|+.
T Consensus         3 ~~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~   41 (330)
T PRK06139          3 GPLHGAVVVITGASSGIGQATAEAFARRGARLVLAARDE   41 (330)
T ss_pred             cCCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3578999999997 8999999999999999999888864

>PRK06172 short chain dehydrogenase; Provisional

Probab=93.99  E-value=0.16  Score=41.28  Aligned_cols=38  Identities=24%  Similarity=0.216  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .+.+|++.|.|. |.||+.+++.+..-|++|+..+|+..
T Consensus         4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~   42 (253)
T PRK06172          4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAA   42 (253)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            478999999995 89999999999999999999888653

>PRK08303 short chain dehydrogenase; Provisional

Probab=93.98  E-value=0.34  Score=41.25  Aligned_cols=39  Identities=18%  Similarity=0.250  Sum_probs=33.9

Q ss_pred             ccccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           78 TTKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ...+.||++.|.|- +.||+++|+.+..-|++|+..+|+.
T Consensus         3 ~~~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~   42 (305)
T PRK08303          3 MKPLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRST   42 (305)
T ss_pred             CcCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeccc
Confidence            34689999999997 4799999999999999998887763

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=93.94  E-value=0.078  Score=46.16  Aligned_cols=35  Identities=26%  Similarity=0.385  Sum_probs=32.2

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .-++|||||||+.|+-+|+.+..-|..++..||+.
T Consensus        51 ~tl~IaIIGfGnmGqflAetli~aGh~li~hsRsd   85 (480)
T KOG2380|consen   51 ATLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD   85 (480)
T ss_pred             cceEEEEEecCcHHHHHHHHHHhcCceeEecCcch
Confidence            35689999999999999999999999999999875

>PRK07074 short chain dehydrogenase; Provisional

Probab=93.94  E-value=0.14  Score=41.70  Aligned_cols=34  Identities=29%  Similarity=0.271  Sum_probs=30.5

Q ss_pred             CCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           83 GRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        83 g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +|++.|.|. |.||+++++.|..-|++|+..+|+.
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~   36 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDA   36 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            678999996 8999999999999999999888764

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=93.92  E-value=0.087  Score=45.88  Aligned_cols=37  Identities=30%  Similarity=0.370  Sum_probs=32.9

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRA  115 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~  115 (204)
                      ..|..++|.|+|+|.+|..+|+.|...|. ++..+|+.
T Consensus        20 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         20 QKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            46899999999999999999999999998 77777753

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.89  E-value=0.11  Score=47.05  Aligned_cols=33  Identities=18%  Similarity=0.401  Sum_probs=30.0

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      .||+|+|+|+|.-|+++++.|+. |++|+.+|..
T Consensus         5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~   37 (454)
T PRK01368          5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDL   37 (454)
T ss_pred             CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence            58999999999999999999996 9999998843

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.88  E-value=0.11  Score=46.61  Aligned_cols=35  Identities=23%  Similarity=0.302  Sum_probs=31.8

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++-+++|+|+|.+|..+|+.|+..|.+|.++|...
T Consensus         5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   39 (448)
T PRK03803          5 SDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE   39 (448)
T ss_pred             cCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence            46699999999999999999999999999998754

>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated

Probab=93.88  E-value=0.27  Score=43.19  Aligned_cols=62  Identities=19%  Similarity=0.252  Sum_probs=47.7

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCC-C-----CCcceeCHHHHHHHHHcCCceE
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNT-K-----YKGALVDESELVSALLEDRLAA  143 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~-~-----~~G~lvd~~aL~~aL~~g~i~g  143 (204)
                      ..++|+|+|-|..|+.+++.++.+|.+|+.++..+.... .     +.....|.++|.+.+++.++-+
T Consensus        11 ~~~~ilIiG~g~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~   78 (395)
T PRK09288         11 SATRVMLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSHVIDMLDGDALRAVIEREKPDY   78 (395)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchHHhhhheEECCCCCHHHHHHHHHHhCCCE
Confidence            456999999999999999999999999988877653211 1     1155678899999888766653

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=93.87  E-value=0.21  Score=44.59  Aligned_cols=36  Identities=31%  Similarity=0.310  Sum_probs=32.7

Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +..+++.|+|+|.+|+.+++.|...|.+|+.+++.+
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~  264 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDP  264 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            457899999999999999999999999999998765

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.86  E-value=0.13  Score=41.57  Aligned_cols=37  Identities=16%  Similarity=0.204  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +++|+++.|.|. |.||+.+++.+...|++|+..+|+.
T Consensus         2 ~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~   39 (253)
T PRK08217          2 DLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQ   39 (253)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            378999999997 9999999999999999998888764

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=93.85  E-value=0.11  Score=43.08  Aligned_cols=36  Identities=25%  Similarity=0.388  Sum_probs=31.1

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSR  114 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r  114 (204)
                      ..|++++|.|+|+|.+|..+++.|...|. ++..+|.
T Consensus        28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~   64 (245)
T PRK05690         28 EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDF   64 (245)
T ss_pred             HHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            46999999999999999999999998887 4665554

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=93.85  E-value=0.064  Score=46.02  Aligned_cols=34  Identities=24%  Similarity=0.456  Sum_probs=31.2

Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcC
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR  114 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r  114 (204)
                      +.||.+-|.|||.+|+-.|..||+||++|+...-
T Consensus       212 ~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEi  245 (434)
T KOG1370|consen  212 IAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEI  245 (434)
T ss_pred             ecccEEEEeccCccchhHHHHHhhcCcEEEEecc
Confidence            6899999999999999999999999999987543

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=93.84  E-value=0.12  Score=43.02  Aligned_cols=35  Identities=34%  Similarity=0.491  Sum_probs=28.0

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcC----CEEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFG----CFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg----~~V~~~~r~~  116 (204)
                      ...+|||||+|++|+.+++.+..-+    -+|++++|+.
T Consensus         2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~   40 (260)
T PTZ00431          2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSK   40 (260)
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCCh
Confidence            4568999999999999999997544    2488877754

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=93.76  E-value=0.12  Score=38.79  Aligned_cols=32  Identities=25%  Similarity=0.327  Sum_probs=27.7

Q ss_pred             EEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521           85 SVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE  116 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~  116 (204)
                      +|.|+|+|.+|.++++.|...|. ++..+|...
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            58999999999999999999998 577777643

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.74  E-value=0.31  Score=39.77  Aligned_cols=58  Identities=16%  Similarity=0.161  Sum_probs=41.1

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCC--------C-CCCcceeCHHHHHHHHH
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPN--------T-KYKGALVDESELVSALL  137 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~--------~-~~~G~lvd~~aL~~aL~  137 (204)
                      .+.||++.|.| .|.||+++|+.+...|++|+...++....        . .+...+-|++++.++++
T Consensus         4 ~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~Dl~~~~~~~~~~~   71 (255)
T PRK06463          4 RFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKELREKGVFTIKCDVGNRDQVKKSKE   71 (255)
T ss_pred             CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhCCCeEEEecCCCHHHHHHHHH
Confidence            46899999999 59999999999999999997765432210        0 11155666776665554

>PRK05866 short chain dehydrogenase; Provisional

Probab=93.74  E-value=0.17  Score=42.73  Aligned_cols=39  Identities=23%  Similarity=0.355  Sum_probs=34.9

Q ss_pred             ccccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           78 TTKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +..+.++++.|.|. |.||+++|+.+..-|++|+..+|+.
T Consensus        35 ~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~   74 (293)
T PRK05866         35 PVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARRE   74 (293)
T ss_pred             CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45789999999995 9999999999999999999888864

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=93.74  E-value=0.16  Score=45.08  Aligned_cols=32  Identities=13%  Similarity=0.086  Sum_probs=28.1

Q ss_pred             EEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      +|+|||+|.+|..+|..+. .|.+|+++|++..
T Consensus         2 kI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~   33 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIA-QNHEVVALDILPS   33 (388)
T ss_pred             EEEEECCCHHHHHHHHHHH-hCCcEEEEECCHH
Confidence            7999999999999997776 4999999998753

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=93.73  E-value=0.11  Score=46.49  Aligned_cols=38  Identities=29%  Similarity=0.418  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCCC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAEK  117 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~~  117 (204)
                      +|.++++.|||+|.+|+-+|+.|..-|. +|+..+|+..
T Consensus       175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~e  213 (414)
T COG0373         175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLE  213 (414)
T ss_pred             ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHH
Confidence            4899999999999999999999999995 5777888754

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=93.70  E-value=0.32  Score=40.26  Aligned_cols=36  Identities=25%  Similarity=0.337  Sum_probs=30.7

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSR  114 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r  114 (204)
                      ..|++++|.|+|+|.+|..+|+.|...|.. +..+|+
T Consensus        20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~   56 (240)
T TIGR02355        20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDF   56 (240)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeC
Confidence            468999999999999999999999988874 555554

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=93.70  E-value=0.095  Score=43.49  Aligned_cols=32  Identities=25%  Similarity=0.253  Sum_probs=26.0

Q ss_pred             EEEEEeCChHHHHHHHHHhhcCCE---EEEEcCCC
Q 045521           85 SVGIIGLGRIGMAVAKRAEAFGCF---ISYRSRAE  116 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~fg~~---V~~~~r~~  116 (204)
                      +|||||+|++|+.+++.+..-|..   |.+++|+.
T Consensus         2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~   36 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNA   36 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCH
Confidence            799999999999999999766643   46677754

>PRK09242 tropinone reductase; Provisional

Probab=93.68  E-value=0.18  Score=41.24  Aligned_cols=37  Identities=24%  Similarity=0.417  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+.||++.|.|. |.||+.+++.+...|++|+..+|+.
T Consensus         6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~   43 (257)
T PRK09242          6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDA   43 (257)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence            578999999995 8999999999999999999888764

>PRK06197 short chain dehydrogenase; Provisional

Probab=93.65  E-value=0.16  Score=42.83  Aligned_cols=48  Identities=19%  Similarity=0.170  Sum_probs=37.7

Q ss_pred             HhcCCCCCCccccccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           67 RSEDGEMGYKLTTKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        67 ~~~~w~~~~~~~~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +.+.|...  ...++.||++.|.|. |.||+++|+.+..-|++|+..+|..
T Consensus         2 ~~~~~~~~--~~~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~   50 (306)
T PRK06197          2 KMTKWTAA--DIPDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNL   50 (306)
T ss_pred             CCCCCCcc--ccccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence            34566531  124689999999995 9999999999999999998887753

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=93.65  E-value=0.33  Score=39.83  Aligned_cols=58  Identities=16%  Similarity=0.212  Sum_probs=44.5

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCCC-----CCcceeCHHHHHHHHH
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNTK-----YKGALVDESELVSALL  137 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~-----~~G~lvd~~aL~~aL~  137 (204)
                      .+.+|++.|.| .|.||+++++.|..-|++|+..+++......     +...+-|++++.++++
T Consensus         6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   69 (266)
T PRK06171          6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDGQHENYQFVPTDVSSAEEVNHTVA   69 (266)
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccccccCceEEEEccCCCHHHHHHHHH
Confidence            57899999999 5899999999999999999888876543211     1266777777766554

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.65  E-value=0.14  Score=43.45  Aligned_cols=103  Identities=11%  Similarity=0.085  Sum_probs=61.5

Q ss_pred             ccccCCCEEEEEeCCh-HHHHHHHHHhhcCCEEEEEcCCCCCC----CCCC--------cceeCHHHHHHHHHcCCceEE
Q 045521           78 TTKISGRSVGIIGLGR-IGMAVAKRAEAFGCFISYRSRAEKPN----TKYK--------GALVDESELVSALLEDRLAAA  144 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~-IG~~va~~~~~fg~~V~~~~r~~~~~----~~~~--------G~lvd~~aL~~aL~~g~i~ga  144 (204)
                      +.++.||++.|+|.|. +|+.++.+|...|++|+.+.+..+..    ..++        ...|+.+    .++.|.   .
T Consensus       154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~L~~~~~~aDIvI~AtG~~~~v~~~----~lk~ga---v  226 (283)
T PRK14192        154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLPELVKQADIIVGAVGKPELIKKD----WIKQGA---V  226 (283)
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchhHHHHhccCCEEEEccCCCCcCCHH----HcCCCC---E
Confidence            4578999999999998 99999999999999998776643211    0111        2345543    356664   4


Q ss_pred             EeeCCCCC-C--CCCC---CcCCCCceEEcccCCCCcHHHHHHHHHHHH
Q 045521          145 VLDVFEHE-P--QVPE---ELFGLENVVLLPHAASGTEETRKATADIVI  187 (204)
Q Consensus       145 ~lDV~~~E-P--~~~~---~l~~~~nvilTPH~a~~t~~~~~~~~~~~~  187 (204)
                      .+||-.+. .  ...+   +-...-.-.+||=-+|.-.-+...+.+.++
T Consensus       227 ViDvg~n~~~~~~~GDvd~~~~~~~a~~itPvPGGVGp~T~a~L~~n~~  275 (283)
T PRK14192        227 VVDAGFHPRDGGGVGDIELQGIEEIASAYTPVPGGVGPMTINTLIRQTV  275 (283)
T ss_pred             EEEEEEeecCCCCcccccHHHhhccceEeCCCCCcChHHHHHHHHHHHH
Confidence            67775331 1  1101   111112345799888776544444433333

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.65  E-value=0.25  Score=40.79  Aligned_cols=36  Identities=19%  Similarity=0.309  Sum_probs=31.1

Q ss_pred             ccCCCEEEEEe---CChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           80 KISGRSVGIIG---LGRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        80 ~l~g~tvGIvG---~G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      .+.||++.|.|   -+.||+++|+.+...|++|+...+.
T Consensus         3 ~~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~   41 (261)
T PRK08690          3 FLQGKKILITGMISERSIAYGIAKACREQGAELAFTYVV   41 (261)
T ss_pred             ccCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCc
Confidence            37899999999   4589999999999999999876553

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=93.63  E-value=0.1  Score=43.81  Aligned_cols=32  Identities=31%  Similarity=0.417  Sum_probs=24.2

Q ss_pred             CEEEEEeCChHHHHHHHHHhh---cCCEEEE-EcCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEA---FGCFISY-RSRA  115 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~---fg~~V~~-~~r~  115 (204)
                      ++|||||||.||+.+++.+..   .++++.+ ++|.
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~   38 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNA   38 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCC
Confidence            689999999999999998864   2356544 4443

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=93.62  E-value=0.18  Score=43.18  Aligned_cols=33  Identities=24%  Similarity=0.216  Sum_probs=28.6

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcC--CEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFG--CFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg--~~V~~~~r~~  116 (204)
                      ++|+|||.|.+|..+|..+...|  -+|..+|+..
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~   35 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK   35 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence            37999999999999999998878  5788888864

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.61  E-value=0.15  Score=45.59  Aligned_cols=37  Identities=27%  Similarity=0.263  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++.++++.|+|+|.+|...++.|+..|.+|.++|...
T Consensus         3 ~~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~   39 (438)
T PRK03806          3 DYQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRI   39 (438)
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            3568999999999999999999999999999988654

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=93.60  E-value=0.11  Score=47.65  Aligned_cols=35  Identities=23%  Similarity=0.328  Sum_probs=31.6

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      =++|||||.|..|+.+|..+..-|.+|..|+++..
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e   39 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE   39 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            36899999999999999999999999999998753

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK08264 short chain dehydrogenase; Validated

Probab=93.59  E-value=0.23  Score=39.97  Aligned_cols=59  Identities=22%  Similarity=0.231  Sum_probs=46.0

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCC-EEEEEcCCCCCCCCC-------CcceeCHHHHHHHHHc
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGC-FISYRSRAEKPNTKY-------KGALVDESELVSALLE  138 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~-~V~~~~r~~~~~~~~-------~G~lvd~~aL~~aL~~  138 (204)
                      ++.++++.|.| .|.||+++|+.|..-|. +|+..+|+..+...+       .+.+-|.+.+.+.++.
T Consensus         3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   70 (238)
T PRK08264          3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTDLGPRVVPLQLDVTDPASVAAAAEA   70 (238)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhhcCCceEEEEecCCCHHHHHHHHHh
Confidence            46889999999 59999999999999999 998888865432211       1677788888777764

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=93.59  E-value=0.56  Score=43.12  Aligned_cols=37  Identities=24%  Similarity=0.366  Sum_probs=33.1

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+.+.++.|+|+|.+|...+..++.+|++|..++++.
T Consensus       161 ~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~  197 (511)
T TIGR00561       161 KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP  197 (511)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4568999999999999999999999999998887653

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK05875 short chain dehydrogenase; Provisional

Probab=93.58  E-value=0.18  Score=41.64  Aligned_cols=37  Identities=24%  Similarity=0.231  Sum_probs=33.1

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+.+|++.|.|. |.||+.+++.+..-|++|+..+|+.
T Consensus         4 ~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~   41 (276)
T PRK05875          4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNP   41 (276)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            368999999996 8999999999999999999888764

>PRK07063 short chain dehydrogenase; Provisional

Probab=93.57  E-value=0.21  Score=40.87  Aligned_cols=37  Identities=19%  Similarity=0.326  Sum_probs=33.0

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+.+|++.|.| .|.||+++++.+..-|++|+..+|..
T Consensus         4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~   41 (260)
T PRK07063          4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDA   41 (260)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            47899999999 48999999999999999999888754

>PRK08328 hypothetical protein; Provisional

Probab=93.54  E-value=0.12  Score=42.51  Aligned_cols=36  Identities=28%  Similarity=0.366  Sum_probs=31.2

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSR  114 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r  114 (204)
                      ..|++++|.|+|+|.+|..+++.|...|.. +..+|.
T Consensus        23 ~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~   59 (231)
T PRK08328         23 EKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDE   59 (231)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            468999999999999999999999999984 555554

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=93.51  E-value=0.27  Score=40.34  Aligned_cols=37  Identities=22%  Similarity=0.333  Sum_probs=32.3

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      ..+.||++.|.|. +.||+++|+.+..-|++|+...++
T Consensus         4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~   41 (260)
T PRK08416          4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNS   41 (260)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence            4689999999996 889999999999999999876543

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.51  E-value=0.24  Score=41.31  Aligned_cols=35  Identities=23%  Similarity=0.422  Sum_probs=32.0

Q ss_pred             cCCCEEEEEeCC---hHHHHHHHHHhhcCCEEEEEcCC
Q 045521           81 ISGRSVGIIGLG---RIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        81 l~g~tvGIvG~G---~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      +.||++.|.|.+   .||+++|+.|..-|++|+..+|+
T Consensus         5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~   42 (271)
T PRK06505          5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQG   42 (271)
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCc
Confidence            789999999997   69999999999999999887764

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=93.46  E-value=0.097  Score=43.00  Aligned_cols=33  Identities=27%  Similarity=0.383  Sum_probs=25.7

Q ss_pred             CEEEEEeCChHHHHHHHHHhh--cCCEE-EEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEA--FGCFI-SYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~--fg~~V-~~~~r~~  116 (204)
                      .+|||||||.||+.+.+.++.  ...+. ..||++.
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~   36 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDE   36 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCH
Confidence            379999999999999999973  45554 5567654

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=93.46  E-value=0.14  Score=38.59  Aligned_cols=31  Identities=35%  Similarity=0.419  Sum_probs=28.4

Q ss_pred             EEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           86 VGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        86 vGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      |.|+|.|.||..+|.+|+.-|.+|..++|..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            6899999999999999998999999988853

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=93.45  E-value=0.15  Score=39.26  Aligned_cols=32  Identities=28%  Similarity=0.413  Sum_probs=29.8

Q ss_pred             EEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +|+|+|.|+.|.++|..+..-|-+|..|+|..
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            68999999999999999999999999999863

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=93.43  E-value=0.34  Score=39.61  Aligned_cols=36  Identities=19%  Similarity=0.268  Sum_probs=32.2

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      ++.||++.|.|. |.||+++|+.+...|++|++.++.
T Consensus         7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~   43 (253)
T PRK08993          7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIV   43 (253)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCc
Confidence            588999999995 689999999999999999888764

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.42  E-value=0.29  Score=40.43  Aligned_cols=35  Identities=23%  Similarity=0.376  Sum_probs=30.5

Q ss_pred             ccCCCEEEEEeC---ChHHHHHHHHHhhcCCEEEEEcC
Q 045521           80 KISGRSVGIIGL---GRIGMAVAKRAEAFGCFISYRSR  114 (204)
Q Consensus        80 ~l~g~tvGIvG~---G~IG~~va~~~~~fg~~V~~~~r  114 (204)
                      .+.||++.|.|.   +.||+++|+.+...|++|+..++
T Consensus         3 ~l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~   40 (260)
T PRK06997          3 FLAGKRILITGLLSNRSIAYGIAKACKREGAELAFTYV   40 (260)
T ss_pred             ccCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEcc
Confidence            378999999994   68999999999999999987654

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=93.36  E-value=0.16  Score=43.02  Aligned_cols=38  Identities=21%  Similarity=0.232  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCCC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAEK  117 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~~  117 (204)
                      .++++++.|||.|..|++++..|...|+ +|..++|+..
T Consensus       122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~  160 (282)
T TIGR01809       122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPD  160 (282)
T ss_pred             ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHH
Confidence            4789999999999999999999999998 5888898753

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>CHL00194 ycf39 Ycf39; Provisional

Probab=93.36  E-value=0.15  Score=43.39  Aligned_cols=55  Identities=20%  Similarity=0.232  Sum_probs=43.0

Q ss_pred             CEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCC-----C---CCcceeCHHHHHHHHHc
Q 045521           84 RSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNT-----K---YKGALVDESELVSALLE  138 (204)
Q Consensus        84 ~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~-----~---~~G~lvd~~aL~~aL~~  138 (204)
                      ++|.|.| .|.||+.+++.|..-|.+|.+.+|+..+..     .   +.|.+-|.++|.++++.
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g   64 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKG   64 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCC
Confidence            4789999 699999999999988999998888643211     1   11778888888888874

>PRK05872 short chain dehydrogenase; Provisional

Probab=93.35  E-value=0.2  Score=42.21  Aligned_cols=38  Identities=29%  Similarity=0.425  Sum_probs=33.9

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..+.||++.|.|. |.||+++|+.+..-|++|+..+|+.
T Consensus         5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~   43 (296)
T PRK05872          5 TSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEE   43 (296)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999995 8899999999999999998888754

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=93.35  E-value=0.098  Score=44.76  Aligned_cols=35  Identities=31%  Similarity=0.385  Sum_probs=31.1

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR  114 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r  114 (204)
                      -|.||||+|||||+-|++=|.-|+--|.+|++=-|
T Consensus        15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr   49 (338)
T COG0059          15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLR   49 (338)
T ss_pred             HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEec
Confidence            58999999999999999999999999999865433

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=93.33  E-value=0.22  Score=40.55  Aligned_cols=37  Identities=16%  Similarity=0.356  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+.||++.|.|. |.||+.+++.+..-|++|+..+|+.
T Consensus         8 ~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~   45 (256)
T PRK06124          8 SLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNA   45 (256)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence            488999999995 8999999999998999999988864

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=93.32  E-value=0.13  Score=47.17  Aligned_cols=34  Identities=24%  Similarity=0.370  Sum_probs=31.1

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      ++|||||.|.+|+.+|..+..-|.+|..+|++..
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e   41 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG   41 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            6899999999999999999888999999998753

>PRK06114 short chain dehydrogenase; Provisional

Probab=93.30  E-value=0.45  Score=38.83  Aligned_cols=37  Identities=16%  Similarity=0.171  Sum_probs=33.0

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+.||++.|.| -|.||+++|+.+...|++|+..+|+.
T Consensus         5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~   42 (254)
T PRK06114          5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRT   42 (254)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCc
Confidence            57899999999 57999999999999999998888754

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=93.28  E-value=0.13  Score=43.16  Aligned_cols=28  Identities=32%  Similarity=0.443  Sum_probs=23.2

Q ss_pred             CEEEEEeCChHHHHHHHHHhhc-CCEEEE
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAF-GCFISY  111 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~f-g~~V~~  111 (204)
                      .+|||+|+|+||+.+++.+... ++++.+
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~   30 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDW   30 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEE
Confidence            4899999999999999998765 566643

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.23  E-value=0.19  Score=40.43  Aligned_cols=38  Identities=37%  Similarity=0.520  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      ++++|++.|.|. |.||+.+++.+..-|++|+..+|+..
T Consensus         2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~   40 (238)
T PRK05786          2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNEN   40 (238)
T ss_pred             CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            378999999996 78999999999999999999888653

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.22  E-value=0.3  Score=40.30  Aligned_cols=37  Identities=22%  Similarity=0.331  Sum_probs=32.1

Q ss_pred             cccCCCEEEEEeCC---hHHHHHHHHHhhcCCEEEEEcCC
Q 045521           79 TKISGRSVGIIGLG---RIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        79 ~~l~g~tvGIvG~G---~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      ..++||++.|.|.+   .||+++|+.+..-|++|+..+|+
T Consensus         4 ~~~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~   43 (260)
T PRK06603          4 GLLQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQS   43 (260)
T ss_pred             cccCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCc
Confidence            35789999999996   49999999999999999877664

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=93.22  E-value=0.19  Score=41.29  Aligned_cols=43  Identities=21%  Similarity=0.213  Sum_probs=37.0

Q ss_pred             CccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           75 YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        75 ~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      ++...+++|++|.|||-|.++.+=++.|..+|++|+.+++...
T Consensus        17 ~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~   59 (223)
T PRK05562         17 MFISLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFS   59 (223)
T ss_pred             eeeEEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            3445578899999999999999999999999999999988653

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.21  E-value=0.31  Score=40.49  Aligned_cols=35  Identities=17%  Similarity=0.398  Sum_probs=31.5

Q ss_pred             cCCCEEEEEeCC---hHHHHHHHHHhhcCCEEEEEcCC
Q 045521           81 ISGRSVGIIGLG---RIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        81 l~g~tvGIvG~G---~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      +.||++.|.|.+   .||+++|+.+..-|++|+..+|+
T Consensus         4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~   41 (262)
T PRK07984          4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN   41 (262)
T ss_pred             cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc
Confidence            789999999986   69999999999999999877665

>PRK05993 short chain dehydrogenase; Provisional

Probab=93.21  E-value=0.32  Score=40.41  Aligned_cols=56  Identities=18%  Similarity=0.202  Sum_probs=41.3

Q ss_pred             CCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCC-----CC---CCcceeCHHHHHHHHH
Q 045521           82 SGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPN-----TK---YKGALVDESELVSALL  137 (204)
Q Consensus        82 ~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~-----~~---~~G~lvd~~aL~~aL~  137 (204)
                      .+|++.|.|. |.||+++|+.+..-|.+|+..+|+....     ..   +.+.+-|++++.++++
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~   67 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEAEGLEAFQLDYAEPESIAALVA   67 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCceEEEccCCCHHHHHHHHH
Confidence            3689999997 9999999999999999999988865321     01   1266667776655544

>PRK06182 short chain dehydrogenase; Validated

Probab=93.20  E-value=0.35  Score=39.98  Aligned_cols=56  Identities=21%  Similarity=0.203  Sum_probs=41.0

Q ss_pred             CCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCC--------CCCcceeCHHHHHHHHH
Q 045521           82 SGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNT--------KYKGALVDESELVSALL  137 (204)
Q Consensus        82 ~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~--------~~~G~lvd~~aL~~aL~  137 (204)
                      .+|++.|.|. |.||+++++.+..-|++|+..+|+.....        .+.+.+-|++++.++++
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~   66 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVD   66 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHH
Confidence            5789999995 89999999999999999998887643210        01156666666655554

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=93.18  E-value=0.33  Score=40.00  Aligned_cols=35  Identities=17%  Similarity=0.323  Sum_probs=30.4

Q ss_pred             ccCCCEEEEEeC---ChHHHHHHHHHhhcCCEEEEEcC
Q 045521           80 KISGRSVGIIGL---GRIGMAVAKRAEAFGCFISYRSR  114 (204)
Q Consensus        80 ~l~g~tvGIvG~---G~IG~~va~~~~~fg~~V~~~~r  114 (204)
                      ++.||++.|.|.   +.||+++|+.+..-|++|+...+
T Consensus         3 ~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~   40 (258)
T PRK07370          3 DLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYL   40 (258)
T ss_pred             ccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEec
Confidence            478999999997   48999999999999999976543

>PRK07577 short chain dehydrogenase; Provisional

Probab=93.17  E-value=0.39  Score=38.42  Aligned_cols=56  Identities=23%  Similarity=0.300  Sum_probs=42.2

Q ss_pred             CCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCCC---CCcceeCHHHHHHHHH
Q 045521           82 SGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNTK---YKGALVDESELVSALL  137 (204)
Q Consensus        82 ~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~~---~~G~lvd~~aL~~aL~  137 (204)
                      .+|++.|.|. |.||+.+++.+..-|++|+..+|+......   +.+.+-|++++.++++
T Consensus         2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~D~~~~~~~~~~~~   61 (234)
T PRK07577          2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAIDDFPGELFACDLADIEQTAATLA   61 (234)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCcccccCceEEEeeCCCHHHHHHHHH
Confidence            5789999996 899999999999999999998886543211   1266677776655444

>PRK14982 acyl-ACP reductase; Provisional

Probab=93.14  E-value=0.18  Score=44.03  Aligned_cols=39  Identities=26%  Similarity=0.425  Sum_probs=32.9

Q ss_pred             ccccCCCEEEEEeC-ChHHHHHHHHHh-hcCC-EEEEEcCCC
Q 045521           78 TTKISGRSVGIIGL-GRIGMAVAKRAE-AFGC-FISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG~-G~IG~~va~~~~-~fg~-~V~~~~r~~  116 (204)
                      +.++++|+|.|+|. |.||+.+++.+. ..|. +++.++|+.
T Consensus       150 g~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~  191 (340)
T PRK14982        150 GIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQ  191 (340)
T ss_pred             ccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCH
Confidence            45799999999998 899999999996 4664 788888864

>PRK08703 short chain dehydrogenase; Provisional

Probab=93.13  E-value=0.19  Score=40.57  Aligned_cols=38  Identities=24%  Similarity=0.344  Sum_probs=34.0

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..|++|++.|.|. |.||+.+++.+...|++|+..+|+.
T Consensus         2 ~~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~   40 (239)
T PRK08703          2 ATLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQ   40 (239)
T ss_pred             CCCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence            3578999999995 8999999999999999999998865

>PRK07814 short chain dehydrogenase; Provisional

Probab=93.11  E-value=0.24  Score=40.76  Aligned_cols=37  Identities=19%  Similarity=0.280  Sum_probs=32.9

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+.++++.|.|- |.||+++++.|..-|++|+..+|+.
T Consensus         7 ~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~   44 (263)
T PRK07814          7 RLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTE   44 (263)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            478999999995 5799999999999999999988865

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=93.11  E-value=0.18  Score=36.18  Aligned_cols=31  Identities=35%  Similarity=0.452  Sum_probs=26.2

Q ss_pred             EEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           86 VGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        86 vGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      |-|+|+|.+|+.+++.|+..+.+|..+++.+
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~   31 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP   31 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence            5699999999999999999776898888754

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=93.11  E-value=0.14  Score=41.54  Aligned_cols=37  Identities=24%  Similarity=0.310  Sum_probs=31.9

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcCC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSRA  115 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r~  115 (204)
                      ..|+.++|.|+|+|.+|..+|+.|...|.. +..+|..
T Consensus        24 ~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         24 EKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             HHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            468999999999999999999999988885 6666653

>PLN02858 fructose-bisphosphate aldolase

Probab=93.08  E-value=0.12  Score=52.84  Aligned_cols=36  Identities=19%  Similarity=0.237  Sum_probs=32.8

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      +.++||+||+|.+|..+|+.|..-|.+|.+|+|++.
T Consensus         3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~   38 (1378)
T PLN02858          3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTP   38 (1378)
T ss_pred             CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            467899999999999999999999999999999754

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=93.08  E-value=0.18  Score=46.47  Aligned_cols=37  Identities=27%  Similarity=0.378  Sum_probs=34.1

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+.+|++.|+|.|.+|++++..|...|++|+.++|+.
T Consensus       376 ~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~  412 (529)
T PLN02520        376 PLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTY  412 (529)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            5789999999999999999999999999999888864

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=93.03  E-value=0.21  Score=40.44  Aligned_cols=37  Identities=22%  Similarity=0.289  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+.||++.|.|. |.||+.+|+.+..-|++|+..+|+.
T Consensus         2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~   39 (248)
T TIGR01832         2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE   39 (248)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch
Confidence            478999999996 8999999999999999999888754

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=93.00  E-value=0.17  Score=38.89  Aligned_cols=28  Identities=32%  Similarity=0.328  Sum_probs=23.6

Q ss_pred             EEEEEeCChHHHHHHHHHh-hcCCEEEEE
Q 045521           85 SVGIIGLGRIGMAVAKRAE-AFGCFISYR  112 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~-~fg~~V~~~  112 (204)
                      +|||+|+|+||+.+++.+. .-++++.+.
T Consensus         2 kv~I~G~GriGr~v~~~~~~~~~~~lvai   30 (149)
T smart00846        2 KVGINGFGRIGRLVLRALLERPDIEVVAI   30 (149)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEe
Confidence            7999999999999999886 457887654

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.98  E-value=0.29  Score=39.36  Aligned_cols=37  Identities=27%  Similarity=0.346  Sum_probs=32.5

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEE-cCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYR-SRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~-~r~~  116 (204)
                      ++.+|++.|.|. |.||+.+++.+..-|++|+.. +|+.
T Consensus         2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~   40 (247)
T PRK05565          2 KLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINE   40 (247)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence            478899999995 999999999999899999887 7754

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=92.98  E-value=0.28  Score=40.60  Aligned_cols=38  Identities=26%  Similarity=0.349  Sum_probs=33.9

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..+++|++.|.|. |.||+++++.|..-|++|+..+|+.
T Consensus         6 ~~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~   44 (278)
T PRK08277          6 FSLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQ   44 (278)
T ss_pred             eccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3678999999996 8999999999999999999888764

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=92.97  E-value=0.29  Score=39.85  Aligned_cols=37  Identities=22%  Similarity=0.376  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+.+|++.|.| .|.||+++++.|..-|++|+..+|+.
T Consensus         6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~   43 (254)
T PRK08085          6 SLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITA   43 (254)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCH
Confidence            57899999999 58999999999999999999888764

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=92.96  E-value=0.13  Score=44.02  Aligned_cols=39  Identities=26%  Similarity=0.406  Sum_probs=35.2

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKP  118 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~  118 (204)
                      ..+.++||.||+|..|..++.-|-.-|.+|++|+|+...
T Consensus        32 ~~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k   70 (327)
T KOG0409|consen   32 TPSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDK   70 (327)
T ss_pred             CcccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHH
Confidence            446899999999999999999999999999999998653

>PRK07326 short chain dehydrogenase; Provisional

Probab=92.95  E-value=0.25  Score=39.59  Aligned_cols=57  Identities=25%  Similarity=0.309  Sum_probs=43.0

Q ss_pred             cCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCC----------CC---CCcceeCHHHHHHHHH
Q 045521           81 ISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPN----------TK---YKGALVDESELVSALL  137 (204)
Q Consensus        81 l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~----------~~---~~G~lvd~~aL~~aL~  137 (204)
                      +.++++.|.| .|.||+.+++.+..-|.+|+..+|.+...          ..   +.+.+-|++++.++++
T Consensus         4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~   74 (237)
T PRK07326          4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVD   74 (237)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHH
Confidence            5689999998 49999999999998899999988865321          00   1166777777766665

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=92.95  E-value=0.15  Score=43.03  Aligned_cols=31  Identities=19%  Similarity=0.379  Sum_probs=28.5

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSR  114 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r  114 (204)
                      ++|+|+|.|.+|..+|..|..-|.+|..++|
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            3799999999999999999988999988887

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=92.93  E-value=0.12  Score=44.99  Aligned_cols=29  Identities=28%  Similarity=0.330  Sum_probs=23.8

Q ss_pred             EEEEeCChHHHHHHHHHhh-cCCEEEEEcC
Q 045521           86 VGIIGLGRIGMAVAKRAEA-FGCFISYRSR  114 (204)
Q Consensus        86 vGIvG~G~IG~~va~~~~~-fg~~V~~~~r  114 (204)
                      |||+|||+||+.+++.+.. =+|+|.++..
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD   30 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTK   30 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEec
Confidence            6999999999999999764 4688877654

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PRK08278 short chain dehydrogenase; Provisional

Probab=92.91  E-value=0.34  Score=40.19  Aligned_cols=38  Identities=32%  Similarity=0.448  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .+.||++.|.| .|.||+.+|+.+...|++|+..+|+..
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~   41 (273)
T PRK08278          3 SLSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAE   41 (273)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccc
Confidence            46899999999 589999999999999999988887643

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=92.90  E-value=0.17  Score=48.92  Aligned_cols=75  Identities=23%  Similarity=0.136  Sum_probs=50.1

Q ss_pred             CEEEEEeCChHHHHH-HHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCcCCC
Q 045521           84 RSVGIIGLGRIGMAV-AKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGL  162 (204)
Q Consensus        84 ~tvGIvG~G~IG~~v-a~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l~~~  162 (204)
                      +++.|+|+|.+|... |+.|+..|.+|.+.|....+             ..+.|++-     ++.++...+  ...+-..
T Consensus         5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~-------------~~~~L~~~-----gi~~~~g~~--~~~~~~~   64 (809)
T PRK14573          5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGK-------------TVEKLKAK-----GARFFLGHQ--EEHVPED   64 (809)
T ss_pred             ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCCh-------------HHHHHHHC-----CCEEeCCCC--HHHcCCC
Confidence            369999999999998 99999999999999875421             12234432     222332221  1223345


Q ss_pred             CceEEcccCCCCcHHH
Q 045521          163 ENVVLLPHAASGTEET  178 (204)
Q Consensus       163 ~nvilTPH~a~~t~~~  178 (204)
                      +-|++||.+.....+.
T Consensus        65 d~vV~SpgI~~~~p~~   80 (809)
T PRK14573         65 AVVVYSSSISKDNVEY   80 (809)
T ss_pred             CEEEECCCcCCCCHHH
Confidence            7799999998776653

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=92.90  E-value=0.15  Score=42.70  Aligned_cols=33  Identities=21%  Similarity=0.300  Sum_probs=26.1

Q ss_pred             CEEEEEeCChHHHHHHHHHhhc--CCEEE-EEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAF--GCFIS-YRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~f--g~~V~-~~~r~~  116 (204)
                      .+|||||+|.||+.+++.+...  ++++. .++++.
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~   37 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNL   37 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCH
Confidence            4799999999999999988764  57754 466654

>PRK12829 short chain dehydrogenase; Provisional

Probab=92.87  E-value=0.3  Score=39.79  Aligned_cols=59  Identities=17%  Similarity=0.173  Sum_probs=45.5

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCC---------C--C-CCcceeCHHHHHHHHHc
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPN---------T--K-YKGALVDESELVSALLE  138 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~---------~--~-~~G~lvd~~aL~~aL~~  138 (204)
                      .+.++++.|.|. |.||+.+++.|...|++|+..+|+....         .  . ..+.+-|++++.+++++
T Consensus         8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   79 (264)
T PRK12829          8 PLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDT   79 (264)
T ss_pred             ccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHH
Confidence            478999999995 9999999999999999999888764311         0  0 12677788887776654

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=92.86  E-value=0.33  Score=41.85  Aligned_cols=59  Identities=22%  Similarity=0.168  Sum_probs=45.5

Q ss_pred             cCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCC----------C---CCcceeCHHHHHHHHHcC
Q 045521           81 ISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNT----------K---YKGALVDESELVSALLED  139 (204)
Q Consensus        81 l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~----------~---~~G~lvd~~aL~~aL~~g  139 (204)
                      ++||+|.|.|. |-||+.+++.|..-|.+|++.+|......          .   +.+.+-|.+++.++++..
T Consensus         2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~   74 (349)
T TIGR02622         2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEF   74 (349)
T ss_pred             cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhc
Confidence            46899999994 99999999999999999998887543211          0   116777888888877753

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=92.85  E-value=0.8  Score=39.32  Aligned_cols=80  Identities=21%  Similarity=0.198  Sum_probs=50.4

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCceEEEeeCCCCC----CC---CC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHE----PQ---VP  156 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~ga~lDV~~~E----P~---~~  156 (204)
                      ++|.|+|.|.||..++-+|...|..|+.+.|.++               ++++++.-+.   +.-...+    +.   ..
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~---------------~~~l~~~GL~---i~~~~~~~~~~~~~~~~~   62 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR---------------LEALKKKGLR---IEDEGGNFTTPVVAATDA   62 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH---------------HHHHHhCCeE---EecCCCccccccccccCh
Confidence            4899999999999999999999977887777532               4567666332   2211111    11   11


Q ss_pred             CCcCCCCceEEcccCCCCcHHHHHHH
Q 045521          157 EELFGLENVVLLPHAASGTEETRKAT  182 (204)
Q Consensus       157 ~~l~~~~nvilTPH~a~~t~~~~~~~  182 (204)
                      ..+-..+.+|+|+- ++.++++...+
T Consensus        63 ~~~~~~Dlviv~vK-a~q~~~al~~l   87 (307)
T COG1893          63 EALGPADLVIVTVK-AYQLEEALPSL   87 (307)
T ss_pred             hhcCCCCEEEEEec-cccHHHHHHHh
Confidence            23456677777776 44555544443

>PRK05876 short chain dehydrogenase; Provisional

Probab=92.85  E-value=0.26  Score=41.05  Aligned_cols=37  Identities=22%  Similarity=0.291  Sum_probs=33.0

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++.||++.|.| .|.||+++|+.|..-|++|+..++..
T Consensus         3 ~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~   40 (275)
T PRK05876          3 GFPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDK   40 (275)
T ss_pred             CcCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            47899999998 78999999999999999998887754

>PLN02253 xanthoxin dehydrogenase

Probab=92.81  E-value=0.27  Score=40.71  Aligned_cols=38  Identities=13%  Similarity=0.259  Sum_probs=33.4

Q ss_pred             cccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..+.||++.|.| .|.||+++++.+..-|++|+..++..
T Consensus        14 ~~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~   52 (280)
T PLN02253         14 QRLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQD   52 (280)
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence            468899999999 47999999999999999998887753

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=92.78  E-value=0.16  Score=44.26  Aligned_cols=29  Identities=31%  Similarity=0.290  Sum_probs=23.8

Q ss_pred             CEEEEEeCChHHHHHHHHHhh-cCCEEEEE
Q 045521           84 RSVGIIGLGRIGMAVAKRAEA-FGCFISYR  112 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~-fg~~V~~~  112 (204)
                      .+|||+|+|+||+++++.+.. =+|++.+.
T Consensus         2 ikVaI~G~GrIGr~va~al~~~~d~eLvav   31 (341)
T PRK04207          2 IKVGVNGYGTIGKRVADAVAAQPDMELVGV   31 (341)
T ss_pred             eEEEEECCCHHHHHHHHHHhcCCCcEEEEE
Confidence            379999999999999998864 46787654

>PRK06940 short chain dehydrogenase; Provisional

Probab=92.78  E-value=0.29  Score=40.79  Aligned_cols=33  Identities=33%  Similarity=0.418  Sum_probs=29.4

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +|++.|-|.|.||+++|+.+. -|.+|+..+|+.
T Consensus         2 ~k~~lItGa~gIG~~la~~l~-~G~~Vv~~~r~~   34 (275)
T PRK06940          2 KEVVVVIGAGGIGQAIARRVG-AGKKVLLADYNE   34 (275)
T ss_pred             CCEEEEECCChHHHHHHHHHh-CCCEEEEEeCCH
Confidence            688999999999999999996 799999888754

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.75  E-value=0.26  Score=42.17  Aligned_cols=39  Identities=23%  Similarity=0.291  Sum_probs=34.8

Q ss_pred             ccccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEE-cCCC
Q 045521           78 TTKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYR-SRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~-~r~~  116 (204)
                      +.++.||+|+||| .|.+|+.+|.+|..-|+.|..+ +|+.
T Consensus       153 ~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~  193 (296)
T PRK14188        153 HGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR  193 (296)
T ss_pred             CCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC
Confidence            4578999999999 9999999999999999999988 4654

>PRK06483 dihydromonapterin reductase; Provisional

Probab=92.73  E-value=0.49  Score=38.03  Aligned_cols=34  Identities=29%  Similarity=0.262  Sum_probs=30.2

Q ss_pred             CCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           83 GRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        83 g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +|++.|.|. |.||+++|+.|..-|++|+..+|+.
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~   36 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTH   36 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCc
Confidence            578999996 7899999999999999999888765

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=92.72  E-value=0.4  Score=39.17  Aligned_cols=37  Identities=16%  Similarity=0.166  Sum_probs=33.1

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      .++.||++.|.|. |.||+.+++.+...|++|+..+|.
T Consensus        11 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~   48 (258)
T PRK06935         11 FSLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG   48 (258)
T ss_pred             ccCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            3589999999995 899999999999999999888775

>PRK07478 short chain dehydrogenase; Provisional

Probab=92.72  E-value=0.31  Score=39.68  Aligned_cols=37  Identities=27%  Similarity=0.337  Sum_probs=33.1

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++.+|++.|.|. |.||+++++.+..-|.+|+..+|+.
T Consensus         3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~   40 (254)
T PRK07478          3 RLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQ   40 (254)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            478999999995 7999999999999999999888764

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.71  E-value=0.22  Score=40.28  Aligned_cols=58  Identities=22%  Similarity=0.373  Sum_probs=43.2

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCC-------------CCCcceeCHHHHHHHHH
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNT-------------KYKGALVDESELVSALL  137 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~-------------~~~G~lvd~~aL~~aL~  137 (204)
                      ++.++++.|.|. |.||+++++.+...|++|+..+|+.....             .+.+.+-|++.+.++++
T Consensus         2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   73 (251)
T PRK07231          2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVA   73 (251)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence            468999999995 89999999999999999999988753210             01156666666655544

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=92.70  E-value=0.2  Score=44.98  Aligned_cols=73  Identities=22%  Similarity=0.244  Sum_probs=48.4

Q ss_pred             EEEEeCChHHHH-HHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCcCCCCc
Q 045521           86 VGIIGLGRIGMA-VAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLEN  164 (204)
Q Consensus        86 vGIvG~G~IG~~-va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l~~~~n  164 (204)
                      +-++|.|.+|.. +|+.|+..|.+|.++|....+             ..+.|++-.+. ...+ +..     ..+...+-
T Consensus         2 ~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~-------------~~~~l~~~gi~-~~~g-~~~-----~~~~~~d~   61 (448)
T TIGR01082         2 IHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENA-------------TTKRLEALGIP-IYIG-HSA-----ENLDDADV   61 (448)
T ss_pred             EEEEEECHHHHHHHHHHHHHCCCeEEEECCCcch-------------HHHHHHHCcCE-EeCC-CCH-----HHCCCCCE
Confidence            678999999998 999999999999999875421             22334442222 1111 221     12334678


Q ss_pred             eEEcccCCCCcHHH
Q 045521          165 VVLLPHAASGTEET  178 (204)
Q Consensus       165 vilTPH~a~~t~~~  178 (204)
                      |++||++.....+.
T Consensus        62 vV~spgi~~~~p~~   75 (448)
T TIGR01082        62 VVVSAAIKDDNPEI   75 (448)
T ss_pred             EEECCCCCCCCHHH
Confidence            99999998766543

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=92.68  E-value=0.34  Score=39.28  Aligned_cols=57  Identities=16%  Similarity=0.243  Sum_probs=43.5

Q ss_pred             cCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCC-----------C---CCcceeCHHHHHHHHH
Q 045521           81 ISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNT-----------K---YKGALVDESELVSALL  137 (204)
Q Consensus        81 l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~-----------~---~~G~lvd~~aL~~aL~  137 (204)
                      +++|++.|.| .|.||+.+++.+...|.+|+..+|...+..           .   +.+.+-|++++.++++
T Consensus         2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~   73 (258)
T PRK12429          2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGID   73 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence            5789999999 699999999999999999998887653210           1   1266777777766655

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=92.67  E-value=0.16  Score=40.73  Aligned_cols=37  Identities=19%  Similarity=0.280  Sum_probs=32.4

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcCC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSRA  115 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r~  115 (204)
                      ..|++++|.|+|+|.+|.++++.|...|+. +..+|..
T Consensus        17 ~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d   54 (197)
T cd01492          17 KRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR   54 (197)
T ss_pred             HHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            569999999999999999999999999985 6666654

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=92.66  E-value=0.16  Score=43.33  Aligned_cols=32  Identities=25%  Similarity=0.240  Sum_probs=29.4

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      ++|.|+|.|.||..+|-+|..-|.+|..+.|.
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~   34 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRD   34 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence            47999999999999999999999999888885

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=92.64  E-value=0.19  Score=44.85  Aligned_cols=33  Identities=27%  Similarity=0.382  Sum_probs=29.7

Q ss_pred             EEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      ++.|+|+|.+|..+|+.|+..|.+|.+.|....
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~   33 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPN   33 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCC
Confidence            378999999999999999999999999987543

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=92.61  E-value=0.41  Score=39.88  Aligned_cols=37  Identities=22%  Similarity=0.371  Sum_probs=32.0

Q ss_pred             cccCCCEEEEEeC---ChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           79 TKISGRSVGIIGL---GRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        79 ~~l~g~tvGIvG~---G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      ..+.||++.|.|-   +.||+++|+.|..-|++|+...|.
T Consensus         6 ~~~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~   45 (272)
T PRK08159          6 GLMAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQG   45 (272)
T ss_pred             ccccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCc
Confidence            3478999999998   479999999999999999876654

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=92.61  E-value=0.17  Score=40.59  Aligned_cols=37  Identities=30%  Similarity=0.362  Sum_probs=31.7

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcCC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSRA  115 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r~  115 (204)
                      ..|++++|.|+|+|.+|.++++.|...|.+ +..+|..
T Consensus        15 ~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d   52 (198)
T cd01485          15 NKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR   52 (198)
T ss_pred             HHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            468999999999999999999999988886 6566543

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=92.61  E-value=0.2  Score=42.94  Aligned_cols=32  Identities=22%  Similarity=0.354  Sum_probs=29.3

Q ss_pred             EEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +|+|+|.|.+|..+|..|..-|.+|..++|+.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence            69999999999999999999999999888853

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=92.56  E-value=0.42  Score=38.97  Aligned_cols=58  Identities=17%  Similarity=0.172  Sum_probs=43.3

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCC------C-----CCcceeCHHHHHHHHH
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNT------K-----YKGALVDESELVSALL  137 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~------~-----~~G~lvd~~aL~~aL~  137 (204)
                      .+.+|++.|.| .|.||+++|+.|...|++|+..+|......      .     +.+.+-|++++.++++
T Consensus         3 ~l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   72 (257)
T PRK07067          3 RLQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVA   72 (257)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHH
Confidence            37789999999 499999999999999999998887653210      0     1156667777666555

>PRK06057 short chain dehydrogenase; Provisional

Probab=92.52  E-value=0.26  Score=40.22  Aligned_cols=58  Identities=22%  Similarity=0.287  Sum_probs=43.3

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCC------CC---CCcceeCHHHHHHHHH
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPN------TK---YKGALVDESELVSALL  137 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~------~~---~~G~lvd~~aL~~aL~  137 (204)
                      .+.|+++.|.|. |.||+.+++.+...|++|+..+|+....      ..   +...+-|++++.++++
T Consensus         4 ~~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   71 (255)
T PRK06057          4 RLAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVGGLFVPTDVTDEDAVNALFD   71 (255)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcCCcEEEeeCCCHHHHHHHHH
Confidence            478999999997 9999999999999999998888764321      00   1156666666655554

>PRK06194 hypothetical protein; Provisional

Probab=92.50  E-value=0.36  Score=40.08  Aligned_cols=58  Identities=16%  Similarity=0.247  Sum_probs=42.7

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCC-----------CC---CCcceeCHHHHHHHHH
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPN-----------TK---YKGALVDESELVSALL  137 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~-----------~~---~~G~lvd~~aL~~aL~  137 (204)
                      ++.++++.|.| .|.||+.+++.|..-|++|+..+|.....           ..   +.+.+-|.+++.++++
T Consensus         3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~   75 (287)
T PRK06194          3 DFAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALAD   75 (287)
T ss_pred             CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence            46789999999 48999999999999999999888754210           00   1266667776665554

>PRK07856 short chain dehydrogenase; Provisional

Probab=92.50  E-value=0.46  Score=38.66  Aligned_cols=58  Identities=19%  Similarity=0.232  Sum_probs=43.3

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCC---CC---CCcceeCHHHHHHHHH
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPN---TK---YKGALVDESELVSALL  137 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~---~~---~~G~lvd~~aL~~aL~  137 (204)
                      ++.||++.|.|. |.||+++++.|..-|.+|+..+|+....   ..   +.+.+-|++++.++++
T Consensus         3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   67 (252)
T PRK07856          3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPETVDGRPAEFHAADVRDPDQVAALVD   67 (252)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhhhhcCCceEEEEccCCCHHHHHHHHH
Confidence            478999999995 7899999999999999999888865321   01   1266667777665554

>PRK07060 short chain dehydrogenase; Provisional

Probab=92.44  E-value=0.33  Score=39.09  Aligned_cols=60  Identities=23%  Similarity=0.239  Sum_probs=45.2

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCC------C---CCcceeCHHHHHHHHHc
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNT------K---YKGALVDESELVSALLE  138 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~------~---~~G~lvd~~aL~~aL~~  138 (204)
                      ..+.++++.|.|. |.||+.+++.+..-|.+|+..+|+.....      .   +.+.+-|++.+.++++.
T Consensus         5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~   74 (245)
T PRK07060          5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGETGCEPLRLDVGDDAAIRAALAA   74 (245)
T ss_pred             cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHH
Confidence            3578999999997 89999999999999999999988653210      0   11566677777776664

>PRK06153 hypothetical protein; Provisional

Probab=92.43  E-value=0.17  Score=44.87  Aligned_cols=35  Identities=26%  Similarity=0.350  Sum_probs=30.6

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSR  114 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r  114 (204)
                      .|++++|+|||+|.+|..++..|...|. ++..+|.
T Consensus       173 kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~  208 (393)
T PRK06153        173 KLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDG  208 (393)
T ss_pred             HHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECC
Confidence            6899999999999999999999998887 5666654

>PRK07576 short chain dehydrogenase; Provisional

Probab=92.39  E-value=0.28  Score=40.43  Aligned_cols=38  Identities=21%  Similarity=0.384  Sum_probs=34.1

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .++.+|++.|.|. |.||+.+++.+...|++|+..+|+.
T Consensus         5 ~~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~   43 (264)
T PRK07576          5 FDFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQ   43 (264)
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4688999999997 8999999999999999999888764

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.34  E-value=0.37  Score=39.56  Aligned_cols=37  Identities=32%  Similarity=0.426  Sum_probs=33.5

Q ss_pred             CCCEEEEEeC--ChHHHHHHHHHhhcCCEEEEEcCCCCC
Q 045521           82 SGRSVGIIGL--GRIGMAVAKRAEAFGCFISYRSRAEKP  118 (204)
Q Consensus        82 ~g~tvGIvG~--G~IG~~va~~~~~fg~~V~~~~r~~~~  118 (204)
                      .-|.|.|.|+  |.||.++|+.+..-|+.|++..|+..+
T Consensus         6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~   44 (289)
T KOG1209|consen    6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEP   44 (289)
T ss_pred             CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccch
Confidence            4589999998  999999999999999999999998755

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=92.33  E-value=0.24  Score=41.31  Aligned_cols=35  Identities=29%  Similarity=0.456  Sum_probs=31.0

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r~~  116 (204)
                      .|++|.|+|.|.||...++.++.+|++ |+..+++.
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~  155 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSP  155 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            689999999999999999999999997 77776543

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=92.30  E-value=0.41  Score=40.29  Aligned_cols=55  Identities=24%  Similarity=0.233  Sum_probs=42.4

Q ss_pred             CEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCC-----CC---CcceeCHHHHHHHHHc
Q 045521           84 RSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNT-----KY---KGALVDESELVSALLE  138 (204)
Q Consensus        84 ~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~-----~~---~G~lvd~~aL~~aL~~  138 (204)
                      +++.|.| .|.||+.+++.|..-|.+|...+|+.....     ..   .+.+-|.+++.++++.
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~   64 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAG   64 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhC
Confidence            4789998 599999999999999999999888654321     11   1777788888887764

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=92.28  E-value=0.66  Score=38.85  Aligned_cols=65  Identities=20%  Similarity=0.132  Sum_probs=49.8

Q ss_pred             CEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCCC--------CCcceeCHHHHHHHHHcCCceEEEeeCCC
Q 045521           84 RSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNTK--------YKGALVDESELVSALLEDRLAAAVLDVFE  150 (204)
Q Consensus        84 ~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~~--------~~G~lvd~~aL~~aL~~g~i~ga~lDV~~  150 (204)
                      ++|.|+|- |. |+.+++.|...|.+|++..++......        ......|.++|.+.+++.++. +.+|...
T Consensus         1 m~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~-~VIDAtH   74 (256)
T TIGR00715         1 MTVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQALTVHTGALDPQELREFLKRHSID-ILVDATH   74 (256)
T ss_pred             CeEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCccccccccCCceEEECCCCHHHHHHHHHhcCCC-EEEEcCC
Confidence            46788886 77 999999999999999887766532211        114557899999999998887 8889764

This enzyme was found to be a monomer by gel filtration.

>cd08230 glucose_DH Glucose dehydrogenase

Probab=92.26  E-value=0.25  Score=42.63  Aligned_cols=34  Identities=24%  Similarity=0.250  Sum_probs=31.5

Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcC
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR  114 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r  114 (204)
                      ..|++|.|+|.|.||+..++.++..|++|+..++
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~  204 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNR  204 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEec
Confidence            3689999999999999999999999999998876

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=92.24  E-value=0.64  Score=38.01  Aligned_cols=37  Identities=24%  Similarity=0.208  Sum_probs=32.9

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++.||++.|.| -|.||+++|+.+..-|++|+..+|+.
T Consensus         5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~   42 (251)
T PRK12481          5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE   42 (251)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch
Confidence            57899999999 58999999999999999998887753

>PRK06179 short chain dehydrogenase; Provisional

Probab=92.22  E-value=0.51  Score=38.78  Aligned_cols=57  Identities=19%  Similarity=0.200  Sum_probs=44.0

Q ss_pred             CCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCC---C---CCcceeCHHHHHHHHHc
Q 045521           82 SGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNT---K---YKGALVDESELVSALLE  138 (204)
Q Consensus        82 ~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~---~---~~G~lvd~~aL~~aL~~  138 (204)
                      .++++.|.| .|.||+++++.|..-|++|+..+|......   .   +.+.+-|.+++.++++.
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~   66 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAPIPGVELLELDVTDDASVQAAVDE   66 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhccccCCCeeEEeecCCHHHHHHHHHH
Confidence            467899999 589999999999999999999888643221   1   22778888888777764

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=92.16  E-value=0.3  Score=39.33  Aligned_cols=37  Identities=27%  Similarity=0.282  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+.+|++.|.| .|.||+.+++.+..-|.+|+..+|+.
T Consensus         3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~   40 (251)
T PRK12826          3 DLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICG   40 (251)
T ss_pred             CCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence            47899999999 79999999999999999999988864

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=92.15  E-value=0.25  Score=41.91  Aligned_cols=33  Identities=21%  Similarity=0.170  Sum_probs=28.5

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEE-EEEcC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFI-SYRSR  114 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V-~~~~r  114 (204)
                      .++++.|+|.|.||...++.++.+|+++ ...++
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~  177 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWET  177 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence            5789999999999999999999999985 44544

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=92.14  E-value=0.44  Score=39.66  Aligned_cols=53  Identities=17%  Similarity=0.172  Sum_probs=42.2

Q ss_pred             EEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCC--C---CCcceeCHHHHHHHHH
Q 045521           85 SVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNT--K---YKGALVDESELVSALL  137 (204)
Q Consensus        85 tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~--~---~~G~lvd~~aL~~aL~  137 (204)
                      +|.|.|. |.||+.+++.|..-|.+|.+.+|++....  .   ..+..-|.+.|.++++
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~   59 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFS   59 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHh
Confidence            4678886 99999999999988999999988764321  1   2278888999999986

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK07454 short chain dehydrogenase; Provisional

Probab=92.10  E-value=0.37  Score=38.85  Aligned_cols=35  Identities=26%  Similarity=0.187  Sum_probs=31.3

Q ss_pred             CCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+|++.|.|- |.||+.+++.|..-|++|+..+|+.
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~   40 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQ   40 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999995 9999999999999999999998865

>PRK07109 short chain dehydrogenase; Provisional

Probab=92.07  E-value=0.39  Score=41.39  Aligned_cols=38  Identities=26%  Similarity=0.302  Sum_probs=33.6

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..+.++++.|.|. |.||+++++.+..-|++|+..+|+.
T Consensus         4 ~~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~   42 (334)
T PRK07109          4 KPIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGE   42 (334)
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3578999999995 8999999999999999998888764

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=92.07  E-value=0.41  Score=45.08  Aligned_cols=34  Identities=24%  Similarity=0.283  Sum_probs=30.8

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ...|-|+|+|++|+.+++.|+..|.+++..|..+
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~  433 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDP  433 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCH
Confidence            4689999999999999999999999998888764

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=92.07  E-value=0.34  Score=44.87  Aligned_cols=33  Identities=18%  Similarity=0.310  Sum_probs=30.1

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..+-|+|+|++|+.+++.++..|.+|+..|..+
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~  450 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSR  450 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCH
Confidence            578899999999999999999999999988764

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=92.03  E-value=0.32  Score=44.05  Aligned_cols=35  Identities=29%  Similarity=0.446  Sum_probs=31.9

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKP  118 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~  118 (204)
                      +++.|||-|-||-++|..++.||++|..+.+..+-
T Consensus       174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~i  208 (454)
T COG1249         174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI  208 (454)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence            68999999999999999999999999988876653

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=92.03  E-value=0.27  Score=42.53  Aligned_cols=34  Identities=24%  Similarity=0.255  Sum_probs=28.1

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhc-CCEEEE-EcCCC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAF-GCFISY-RSRAE  116 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~f-g~~V~~-~~r~~  116 (204)
                      .-+|||+|+|+||+.+++.+... ++++.+ ++++.
T Consensus         3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~   38 (324)
T TIGR01921         3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRG   38 (324)
T ss_pred             CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCc
Confidence            36899999999999999999765 799865 57663

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PRK08628 short chain dehydrogenase; Provisional

Probab=92.01  E-value=0.33  Score=39.57  Aligned_cols=39  Identities=21%  Similarity=0.263  Sum_probs=34.0

Q ss_pred             cccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           79 TKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        79 ~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .+|.|+++.|.| .|.||+.+|+.+...|++|+..+|...
T Consensus         3 ~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~   42 (258)
T PRK08628          3 LNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAP   42 (258)
T ss_pred             CCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChh
Confidence            358999999999 579999999999999999988877653

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=92.01  E-value=0.67  Score=37.91  Aligned_cols=36  Identities=25%  Similarity=0.271  Sum_probs=32.0

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      .+++|++.|.| -|.||+++|+.+...|++|+...|+
T Consensus         4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~   40 (261)
T PRK08936          4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRS   40 (261)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            58899999999 5889999999999999999877664

>PRK07806 short chain dehydrogenase; Provisional

Probab=92.01  E-value=0.34  Score=39.16  Aligned_cols=58  Identities=21%  Similarity=0.314  Sum_probs=43.6

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCC------------C---CCCcceeCHHHHHHHHH
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPN------------T---KYKGALVDESELVSALL  137 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~------------~---~~~G~lvd~~aL~~aL~  137 (204)
                      .+.+|++.|.|. |.||+.+++.+..-|.+|+..+|+..+.            .   .+.+.+-|.+++.++++
T Consensus         3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~   76 (248)
T PRK07806          3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMD   76 (248)
T ss_pred             CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence            478899999995 9999999999999999998877754211            0   01267778877766655

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=92.00  E-value=0.31  Score=39.85  Aligned_cols=34  Identities=21%  Similarity=0.193  Sum_probs=26.3

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcC---CE-EEEEcCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFG---CF-ISYRSRA  115 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg---~~-V~~~~r~  115 (204)
                      ..++|+|||.|++|+.+++.+..-+   .+ ++.++|+
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~   40 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRS   40 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCC
Confidence            4678999999999999999886544   33 6666654

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=92.00  E-value=0.93  Score=42.50  Aligned_cols=34  Identities=26%  Similarity=0.295  Sum_probs=30.8

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ...+-|+|+|++|+.+++.|+..|.+++..|..+
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~  433 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDI  433 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCH
Confidence            4579999999999999999999999999988754

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=91.99  E-value=0.26  Score=40.59  Aligned_cols=36  Identities=22%  Similarity=0.347  Sum_probs=30.7

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSR  114 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r  114 (204)
                      ..|++++|.|+|+|.+|..+++.|...|. +++.+|.
T Consensus         7 ~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~   43 (231)
T cd00755           7 EKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDF   43 (231)
T ss_pred             HHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            35899999999999999999999988887 5666654

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=91.94  E-value=0.25  Score=42.63  Aligned_cols=35  Identities=37%  Similarity=0.495  Sum_probs=31.6

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~  116 (204)
                      .|+|+.|.|+|.+|.+++.-+++.|+ +|+++|-.+
T Consensus       192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~  227 (375)
T KOG0022|consen  192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINP  227 (375)
T ss_pred             CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCH
Confidence            58999999999999999999999998 688887654

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=91.90  E-value=0.19  Score=45.04  Aligned_cols=32  Identities=22%  Similarity=0.285  Sum_probs=28.8

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+|||||+|.+|.-+|..+.. |.+|++||+..
T Consensus         7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~   38 (425)
T PRK15182          7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNK   38 (425)
T ss_pred             CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCH
Confidence            689999999999999999876 79999998764

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=91.88  E-value=0.27  Score=42.25  Aligned_cols=36  Identities=22%  Similarity=0.413  Sum_probs=31.1

Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE  116 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~  116 (204)
                      ..|++|.|.|.|.+|+..+++++..|+ +|++.++++
T Consensus       168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~  204 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSP  204 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCH
Confidence            368999999999999999999999999 577776543

>PRK09186 flagellin modification protein A; Provisional

Probab=91.85  E-value=0.33  Score=39.43  Aligned_cols=57  Identities=21%  Similarity=0.260  Sum_probs=43.2

Q ss_pred             cCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCC---------------CCC-CcceeCHHHHHHHHH
Q 045521           81 ISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPN---------------TKY-KGALVDESELVSALL  137 (204)
Q Consensus        81 l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~---------------~~~-~G~lvd~~aL~~aL~  137 (204)
                      +.||++.|.|. |.||+.+|+.|..-|++|+..+|+....               ..+ .+.+-|.+++.++++
T Consensus         2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~   75 (256)
T PRK09186          2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLS   75 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHH
Confidence            57899999995 8999999999999999999888764321               011 266667777766655

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=91.83  E-value=0.39  Score=37.65  Aligned_cols=38  Identities=18%  Similarity=0.311  Sum_probs=32.1

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .++.||+|.|||-|+.|-.++..|...|-+|..+.|++
T Consensus       163 ~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~  200 (203)
T PF13738_consen  163 EDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP  200 (203)
T ss_dssp             GGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred             hhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence            46889999999999999999999999999998888875

...

>PRK05717 oxidoreductase; Validated

Probab=91.81  E-value=0.36  Score=39.42  Aligned_cols=38  Identities=21%  Similarity=0.217  Sum_probs=33.6

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..+.||++.|.|- |.||+.+|+.+..-|++|+..+++.
T Consensus         6 ~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~   44 (255)
T PRK05717          6 PGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDR   44 (255)
T ss_pred             cccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCH
Confidence            4688999999995 8999999999999999998887654

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=91.78  E-value=0.34  Score=39.88  Aligned_cols=38  Identities=16%  Similarity=0.303  Sum_probs=33.0

Q ss_pred             cccCCCEEEEEeCC---hHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGLG---RIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~G---~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..+.||++.|.|.+   .||+++|+.+..-|++|+..+|..
T Consensus         6 ~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~   46 (258)
T PRK07533          6 LPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLND   46 (258)
T ss_pred             cccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence            35789999999975   799999999999999998777653

>PRK12744 short chain dehydrogenase; Provisional

Probab=91.75  E-value=0.7  Score=37.70  Aligned_cols=35  Identities=23%  Similarity=0.237  Sum_probs=30.1

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSR  114 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r  114 (204)
                      .+.+|++.|.| .|.||+.+|+.+...|++|+...+
T Consensus         5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~   40 (257)
T PRK12744          5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHY   40 (257)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEec
Confidence            47899999999 689999999999999999665543

>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]

Probab=91.74  E-value=0.26  Score=44.63  Aligned_cols=38  Identities=29%  Similarity=0.399  Sum_probs=34.5

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..+.|+|+-|-|+|++|+..++++...|.+|+.++.+.
T Consensus       247 ~~~kgkr~~i~G~Gnv~~~aa~~l~~~G~kvvavsD~~  284 (514)
T KOG2250|consen  247 KGIKGKRVVIQGFGNVGGHAAKKLSEKGAKVVAVSDSK  284 (514)
T ss_pred             CCcCceEEEEeCCCchHHHHHHHHHhcCCEEEEEEcCc
Confidence            46789999999999999999999999999999887654

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=91.74  E-value=0.32  Score=45.07  Aligned_cols=37  Identities=22%  Similarity=0.355  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .-.|++|.|||.|.+|...|..|+..|.+|+.+++..
T Consensus       134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~  170 (564)
T PRK12771        134 PDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGP  170 (564)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            3579999999999999999999999999999888654

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=91.68  E-value=0.28  Score=43.26  Aligned_cols=36  Identities=19%  Similarity=0.341  Sum_probs=31.9

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSR  114 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r  114 (204)
                      ..|++++|.|+|+|.+|..+++.|...|. ++..+|+
T Consensus        37 ~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~   73 (370)
T PRK05600         37 ERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDD   73 (370)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeC
Confidence            46999999999999999999999999998 6666665

>PRK10637 cysG siroheme synthase; Provisional

Probab=91.68  E-value=0.29  Score=44.28  Aligned_cols=42  Identities=14%  Similarity=0.155  Sum_probs=37.0

Q ss_pred             CccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           75 YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        75 ~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +|...+|+||+|.|||-|.++.+=++.|..+|++|..+++..
T Consensus         4 ~P~~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~   45 (457)
T PRK10637          4 LPIFCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAF   45 (457)
T ss_pred             eceEEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            345568999999999999999999999999999999998754

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=91.67  E-value=0.48  Score=39.34  Aligned_cols=63  Identities=24%  Similarity=0.285  Sum_probs=50.1

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCceEEEeeCCCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHE  152 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~ga~lDV~~~E  152 (204)
                      .+.+|++.|=|. ..||.++|+.+..-|.+|+...|+...          .++|.+.+.+++.....+||.+.+
T Consensus         3 ~~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~dr----------L~~la~~~~~~~~~~~~~DVtD~~   66 (246)
T COG4221           3 TLKGKVALITGASSGIGEATARALAEAGAKVVLAARREER----------LEALADEIGAGAALALALDVTDRA   66 (246)
T ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHH----------HHHHHHhhccCceEEEeeccCCHH
Confidence            467899999996 579999999999999999988887432          356666666667777888888764

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=91.67  E-value=0.24  Score=43.58  Aligned_cols=37  Identities=22%  Similarity=0.271  Sum_probs=32.3

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRA  115 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~  115 (204)
                      ..|.+++|.|+|+|.+|..+++.|...|. ++..+|+.
T Consensus       131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        131 RRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             HHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            36899999999999999999999999998 57666654

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=91.66  E-value=0.51  Score=38.80  Aligned_cols=37  Identities=27%  Similarity=0.367  Sum_probs=32.9

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+.+|++.|.|. |.||+++++.+...|++|+..+|+.
T Consensus         7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~   44 (265)
T PRK07097          7 SLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQ   44 (265)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCH
Confidence            578999999995 7999999999999999998887764

>PLN02740 Alcohol dehydrogenase-like

Probab=91.66  E-value=0.31  Score=42.61  Aligned_cols=34  Identities=44%  Similarity=0.549  Sum_probs=30.6

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRA  115 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~  115 (204)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.+++
T Consensus       198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~  232 (381)
T PLN02740        198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDIN  232 (381)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCC
Confidence            58999999999999999999999999 58877654

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=91.64  E-value=0.35  Score=41.11  Aligned_cols=109  Identities=12%  Similarity=0.126  Sum_probs=64.2

Q ss_pred             ccccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCCC----CC--------cceeCHHHHHHHHHcCCceEE
Q 045521           78 TTKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNTK----YK--------GALVDESELVSALLEDRLAAA  144 (204)
Q Consensus        78 ~~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~~----~~--------G~lvd~~aL~~aL~~g~i~ga  144 (204)
                      +.++.||+++|||. |-+|+-+|.+|..-|+.|..+....+...+    .+        .+.|+.+-    ++.|.   .
T Consensus       153 ~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVI~avg~~~~v~~~~----ik~Ga---v  225 (284)
T PRK14179        153 NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTRNLAEVARKADILVVAIGRGHFVTKEF----VKEGA---V  225 (284)
T ss_pred             CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCCCHHHHHhhCCEEEEecCccccCCHHH----ccCCc---E
Confidence            56799999999999 999999999999999999887332211000    11        44455432    66664   3


Q ss_pred             EeeCCCCC-C---CCCC-CcCCC--CceEEcccCCCCcHHHHHHHHHHHHHHHHHH
Q 045521          145 VLDVFEHE-P---QVPE-ELFGL--ENVVLLPHAASGTEETRKATADIVIENLEAC  193 (204)
Q Consensus       145 ~lDV~~~E-P---~~~~-~l~~~--~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~  193 (204)
                      .+||--+. +   +..+ .+-..  ---.+||=-+|--.-+..-+.+.+++..+++
T Consensus       226 VIDvgin~~~~gkl~GDVdf~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~  281 (284)
T PRK14179        226 VIDVGMNRDENGKLIGDVDFDEVAEVASYITPVPGGVGPMTITMLMEQTYQAALRS  281 (284)
T ss_pred             EEEecceecCCCCeecCccHHHHHhhccEecCCCCCchHHHHHHHHHHHHHHHHHH
Confidence            56765332 1   1011 11111  1235899877776544444445454444444

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=91.63  E-value=0.54  Score=38.96  Aligned_cols=48  Identities=19%  Similarity=0.212  Sum_probs=39.2

Q ss_pred             EEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcC
Q 045521           85 SVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLED  139 (204)
Q Consensus        85 tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g  139 (204)
                      +|.|+| .|.||+.+++.|..-|.+|...+|..       +.+-|.+++.+++++.
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~-------~d~~~~~~~~~~~~~~   49 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQ-------LDLTDPEALERLLRAI   49 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCcc-------cCCCCHHHHHHHHHhC
Confidence            477889 59999999999998999999888863       5667777887777764

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=91.60  E-value=0.15  Score=44.81  Aligned_cols=57  Identities=30%  Similarity=0.459  Sum_probs=36.0

Q ss_pred             EEEEeCChHHHHHHHHHhhcC-C-EEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCceEEEeeCCCCC
Q 045521           86 VGIIGLGRIGMAVAKRAEAFG-C-FISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHE  152 (204)
Q Consensus        86 vGIvG~G~IG~~va~~~~~fg-~-~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~ga~lDV~~~E  152 (204)
                      |+|+|.|.+|+.+++.|...+ . +|+..+|+....          +.+.+.+...++....+|+.+.|
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~----------~~~~~~~~~~~~~~~~~d~~~~~   59 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKA----------ERLAEKLLGDRVEAVQVDVNDPE   59 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHH----------HHHHT--TTTTEEEEE--TTTHH
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHH----------HHHHhhccccceeEEEEecCCHH
Confidence            689999999999999997655 4 898888875321          22333334566777777776544

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=91.59  E-value=0.33  Score=41.63  Aligned_cols=35  Identities=26%  Similarity=0.379  Sum_probs=31.4

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|.+|.|.|.|.+|+..++.++.+|++|++.+++.
T Consensus       165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~  199 (329)
T TIGR02822       165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGA  199 (329)
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCCh
Confidence            58999999999999999999999999998876653

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=91.59  E-value=0.33  Score=40.98  Aligned_cols=36  Identities=17%  Similarity=0.284  Sum_probs=30.9

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSR  114 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r  114 (204)
                      ..|++++|.|+|+|.+|..+|+.|...|. ++..+|.
T Consensus        26 ~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~   62 (268)
T PRK15116         26 QLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDM   62 (268)
T ss_pred             HHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeC
Confidence            46899999999999999999999998884 5666654

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=91.57  E-value=0.72  Score=37.30  Aligned_cols=60  Identities=20%  Similarity=0.174  Sum_probs=44.6

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCCC-----CCcceeCHHHHHHHHHc
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNTK-----YKGALVDESELVSALLE  138 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~~-----~~G~lvd~~aL~~aL~~  138 (204)
                      .++.+|++.|.|. |.||+.+++.+..-|.+|+..+|.......     +...+-|++.+.+++++
T Consensus         4 ~~~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   69 (252)
T PRK08220          4 MDFSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAFLTQEDYPFATFVLDVSDAAAVAQVCQR   69 (252)
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecchhhhcCCceEEEEecCCCHHHHHHHHHH
Confidence            3588999999995 789999999999999999988876511111     22666777777666653

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=91.54  E-value=0.35  Score=41.30  Aligned_cols=34  Identities=29%  Similarity=0.322  Sum_probs=29.3

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCC--EEEEEcCCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGC--FISYRSRAEK  117 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~--~V~~~~r~~~  117 (204)
                      ++|+|||.|.+|+.+|..|...|.  +|..+|+...
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~   36 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE   36 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            489999999999999999988884  7888888653

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=91.54  E-value=0.33  Score=41.79  Aligned_cols=35  Identities=26%  Similarity=0.339  Sum_probs=31.5

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|.+|.|.|.|.||...++.++..|.+|++.++++
T Consensus       166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~  200 (349)
T TIGR03201       166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDP  200 (349)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH
Confidence            48999999999999999999999999998876643

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK07774 short chain dehydrogenase; Provisional

Probab=91.54  E-value=0.44  Score=38.55  Aligned_cols=37  Identities=19%  Similarity=0.234  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+.+|++.|.|. |.||+.+++.+...|++|+..+|..
T Consensus         3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~   40 (250)
T PRK07774          3 RFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINA   40 (250)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            468899999996 9999999999999999999988864

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=91.52  E-value=0.32  Score=35.92  Aligned_cols=32  Identities=34%  Similarity=0.479  Sum_probs=27.0

Q ss_pred             EEEEEeC-ChHHHHHHHHHhh-cCCEEE-EEcCCC
Q 045521           85 SVGIIGL-GRIGMAVAKRAEA-FGCFIS-YRSRAE  116 (204)
Q Consensus        85 tvGIvG~-G~IG~~va~~~~~-fg~~V~-~~~r~~  116 (204)
                      +|+|+|+ |++|+.+++.+.. =++++. ++++..
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~   36 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP   36 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC
Confidence            7999999 9999999999987 778864 556655

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK06914 short chain dehydrogenase; Provisional

Probab=91.50  E-value=0.68  Score=38.25  Aligned_cols=35  Identities=11%  Similarity=0.149  Sum_probs=31.0

Q ss_pred             CCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+|++.|.| .|.||+.+++.+..-|++|+..+|+.
T Consensus         2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~   37 (280)
T PRK06914          2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNP   37 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCH
Confidence            578999999 58999999999999999999888764

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=91.49  E-value=0.41  Score=39.28  Aligned_cols=36  Identities=22%  Similarity=0.315  Sum_probs=32.4

Q ss_pred             cCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           81 ISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        81 l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +.+|++.|.|. |.||+.+++.|..-|++|+..+|+.
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~   39 (262)
T TIGR03325         3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSA   39 (262)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            67999999995 7899999999999999999888764

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=91.47  E-value=0.39  Score=41.75  Aligned_cols=34  Identities=32%  Similarity=0.615  Sum_probs=30.5

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      .|++|.|.|.|.||+.+++.++.+|++|+..+.+
T Consensus       183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~  216 (360)
T PLN02586        183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSS  216 (360)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            6899999999999999999999999998776543

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=91.46  E-value=0.31  Score=42.67  Aligned_cols=36  Identities=19%  Similarity=0.242  Sum_probs=30.9

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSR  114 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r  114 (204)
                      ..|++++|.|+|+|.+|..+++.|...|.. +..+|.
T Consensus        24 ~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~   60 (355)
T PRK05597         24 QSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDD   60 (355)
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeC
Confidence            468999999999999999999999988884 555554

>PRK08324 short chain dehydrogenase; Validated

Probab=91.41  E-value=0.44  Score=45.25  Aligned_cols=39  Identities=31%  Similarity=0.425  Sum_probs=34.7

Q ss_pred             ccccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           78 TTKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ...+.||++.|.| .|.||+.+++.+...|++|+..+|+.
T Consensus       417 ~~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~  456 (681)
T PRK08324        417 PKPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDE  456 (681)
T ss_pred             CcCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCH
Confidence            3457899999999 59999999999999999999988865

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=91.40  E-value=0.25  Score=42.78  Aligned_cols=28  Identities=32%  Similarity=0.362  Sum_probs=22.8

Q ss_pred             EEEEEeCChHHHHHHHHHhhcC----CEEEEE
Q 045521           85 SVGIIGLGRIGMAVAKRAEAFG----CFISYR  112 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~fg----~~V~~~  112 (204)
                      +|||+|||+||+.+.+.+...+    ++|...
T Consensus         1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaI   32 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALYESGERLGIEVVAL   32 (325)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEE
Confidence            5899999999999999987543    677654

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=91.39  E-value=0.36  Score=42.05  Aligned_cols=34  Identities=29%  Similarity=0.405  Sum_probs=30.7

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRA  115 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~  115 (204)
                      .|.+|.|.|.|.||+..+.+++.+|+ +|+..+++
T Consensus       185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~  219 (368)
T TIGR02818       185 EGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDIN  219 (368)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            58999999999999999999999999 78877654

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=91.39  E-value=0.17  Score=42.72  Aligned_cols=30  Identities=23%  Similarity=0.243  Sum_probs=27.3

Q ss_pred             EEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           88 IIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        88 IvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      |||+|.+|..+|+.+...|.+|.+|+|+..
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~   30 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPD   30 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEEEeCCHH
Confidence            589999999999999999999999998753

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=91.37  E-value=0.47  Score=44.19  Aligned_cols=36  Identities=14%  Similarity=0.212  Sum_probs=32.1

Q ss_pred             cCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           81 ISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        81 l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      -.|+++.|.|. |.||+++++.|...|++|....|..
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~  114 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSA  114 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            47899999995 9999999999999999998887754

>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.36  E-value=0.38  Score=42.84  Aligned_cols=30  Identities=17%  Similarity=0.120  Sum_probs=27.9

Q ss_pred             EEEEEeCChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      +|.|+|+|..|..+|+.|+ .|.+|.+.|..
T Consensus         2 ~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~   31 (401)
T PRK03815          2 KISLFGYGKTTKALAKFLK-KFGGVDIFDDK   31 (401)
T ss_pred             eEEEEeECHHHHHHHHHHh-CCCeEEEEcCC
Confidence            6899999999999999999 99999999854

>PRK06180 short chain dehydrogenase; Provisional

Probab=91.35  E-value=0.29  Score=40.62  Aligned_cols=56  Identities=21%  Similarity=0.152  Sum_probs=42.3

Q ss_pred             CCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCC-----------CCCcceeCHHHHHHHHH
Q 045521           82 SGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNT-----------KYKGALVDESELVSALL  137 (204)
Q Consensus        82 ~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~-----------~~~G~lvd~~aL~~aL~  137 (204)
                      .++++.|.|. |.||+++++.|..-|++|+..+|+.....           .+.+.+-|++++.++++
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~   70 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVA   70 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHH
Confidence            4788999995 89999999999999999999888643210           01266777777776665

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=91.32  E-value=0.43  Score=38.23  Aligned_cols=38  Identities=26%  Similarity=0.293  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      ++.||++.|.| .|.||+.+++.|..-|++|+..+|...
T Consensus         2 ~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~   40 (235)
T PRK06550          2 EFMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDK   40 (235)
T ss_pred             CCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            47899999999 588999999999999999998887653

>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=91.31  E-value=0.38  Score=40.31  Aligned_cols=93  Identities=13%  Similarity=0.146  Sum_probs=61.0

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCC---------EEEEEcCCCCCCC--CCC----------------cceeCHHHHHHH
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGC---------FISYRSRAEKPNT--KYK----------------GALVDESELVSA  135 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~---------~V~~~~r~~~~~~--~~~----------------G~lvd~~aL~~a  135 (204)
                      .-.|.++|+|.||+++.+.+.+|.-         +|++.+.......  +|.                |.....+||++.
T Consensus         3 ~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~~~~skD~~p~nl~sewk~~L~~st~~alsLdaLia~   82 (364)
T KOG0455|consen    3 KVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSESLVASKDVLPENLNSEWKSELIKSTGSALSLDALIAK   82 (364)
T ss_pred             cccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEecccccccccccChhhhchHHHHHHHHhcCCcccHHHHHHH
Confidence            3468999999999999988876643         3444443322111  110                777779999999


Q ss_pred             HHcCCceEEEeeCCCCCCCCCC--CcCCCCceEEcccCCCCc
Q 045521          136 LLEDRLAAAVLDVFEHEPQVPE--ELFGLENVVLLPHAASGT  175 (204)
Q Consensus       136 L~~g~i~ga~lDV~~~EP~~~~--~l~~~~nvilTPH~a~~t  175 (204)
                      |.....--+..|-...+-....  .+.+..-.|.||.--..|
T Consensus        83 L~~sp~p~ilVDntaS~~ia~~y~Kfv~~gi~IatpNKKafs  124 (364)
T KOG0455|consen   83 LLGSPTPLILVDNTASMEIAEIYMKFVDLGICIATPNKKAFS  124 (364)
T ss_pred             HcCCCCceEEEecccHHHHHHHHHHHHhcCceEecCCccccc
Confidence            9988777777787765432221  356667788888655443

>PRK06500 short chain dehydrogenase; Provisional

Probab=91.31  E-value=0.46  Score=38.31  Aligned_cols=37  Identities=24%  Similarity=0.381  Sum_probs=33.0

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+.||++.|.|. |.||+.+++.+...|++|+..+|+.
T Consensus         3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~   40 (249)
T PRK06500          3 RLQGKTALITGGTSGIGLETARQFLAEGARVAITGRDP   40 (249)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCH
Confidence            367899999995 9999999999999999999888763

>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]

Probab=91.29  E-value=1.1  Score=38.51  Aligned_cols=86  Identities=15%  Similarity=0.239  Sum_probs=54.7

Q ss_pred             CCceEEEECCCCCCCCChhhHhhCCc-EEEeCCC-CCchhHHHHHHHHHHHHHhhHHHhcCCCCCCccccccCCCEEEEE
Q 045521           12 PKLEIVATCSAGLDKIDLVKCKEKGI-QVTNTPD-VLTDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTKISGRSVGII   89 (204)
Q Consensus        12 ~~Lk~I~~~~~G~d~id~~~~~~~gI-~v~n~~~-~~~~~vAE~~l~~~L~~~R~~~~~~~w~~~~~~~~~l~g~tvGIv   89 (204)
                      ++.=+|=....|+-.+   ++..-++ +|.|+.+ .+..+  -.++.=++...+.            .| .+.|++|+|+
T Consensus       103 ~D~iViRH~~egaa~~---~a~~~~~~pvINaGDG~~qHP--TQ~LLDl~TI~~~------------~G-~~~gl~iaiv  164 (316)
T COG0540         103 VDAIVIRHPEEGAARL---LAEFSGVNPVINAGDGSHQHP--TQALLDLYTIREE------------FG-RLDGLKIAIV  164 (316)
T ss_pred             CCEEEEeCccccHHHH---HHHhcCCCceEECCCCCCCCc--cHHHHHHHHHHHH------------hC-CcCCcEEEEE
Confidence            3333444444444333   3333466 6888643 22222  2344444444432            22 3899999999


Q ss_pred             e---CChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           90 G---LGRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        90 G---~G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      |   +|+..+..++.|+.||++|..++|.
T Consensus       165 GDlkhsRva~S~~~~L~~~ga~v~lvsP~  193 (316)
T COG0540         165 GDLKHSRVAHSNIQALKRFGAEVYLVSPE  193 (316)
T ss_pred             ccccchHHHHHHHHHHHHcCCEEEEECch
Confidence            9   8999999999999999999999875

>PRK06138 short chain dehydrogenase; Provisional

Probab=91.27  E-value=0.45  Score=38.47  Aligned_cols=58  Identities=19%  Similarity=0.234  Sum_probs=43.3

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCC-------------CCCcceeCHHHHHHHHH
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNT-------------KYKGALVDESELVSALL  137 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~-------------~~~G~lvd~~aL~~aL~  137 (204)
                      .+.||++.|.|. |.||+.+++.+..-|++|+..+|+.....             .+.+.+-|++++.++++
T Consensus         2 ~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   73 (252)
T PRK06138          2 RLAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVD   73 (252)
T ss_pred             CCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH
Confidence            368999999996 89999999999989999988887643110             01166667777766655

>PRK12939 short chain dehydrogenase; Provisional

Probab=91.26  E-value=0.51  Score=38.03  Aligned_cols=58  Identities=14%  Similarity=0.241  Sum_probs=42.6

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCC--------------CCCcceeCHHHHHHHHH
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNT--------------KYKGALVDESELVSALL  137 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~--------------~~~G~lvd~~aL~~aL~  137 (204)
                      .+.+|++.|.|. |.||+.+++.+..-|++|+..+|+.....              .+.+.+-|++++.++++
T Consensus         4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~   76 (250)
T PRK12939          4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFD   76 (250)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence            467999999995 99999999999999999988877543100              01256666776655554

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=91.24  E-value=0.61  Score=38.01  Aligned_cols=37  Identities=19%  Similarity=0.249  Sum_probs=32.9

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+.+|++.|.| -|.||+.+++.+..-|++|+..+|+.
T Consensus         8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~   45 (255)
T PRK06113          8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINA   45 (255)
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCH
Confidence            57899999999 58999999999999999998887754

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=91.23  E-value=0.37  Score=41.10  Aligned_cols=34  Identities=21%  Similarity=0.311  Sum_probs=31.1

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSRA  115 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r~  115 (204)
                      .|.+|.|+|.|.||..+++.++.+|++ |++.+++
T Consensus       163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~  197 (339)
T cd08239         163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPS  197 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            489999999999999999999999999 8887664

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=91.19  E-value=0.39  Score=40.46  Aligned_cols=34  Identities=29%  Similarity=0.401  Sum_probs=29.1

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcC----CEEEEEcCCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFG----CFISYRSRAEK  117 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg----~~V~~~~r~~~  117 (204)
                      +++|+||+|++|++++.-+..-|    -+|++.+|+..
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e   39 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEE   39 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHH
Confidence            58999999999999999998777    57888887653

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=91.18  E-value=0.4  Score=39.17  Aligned_cols=36  Identities=25%  Similarity=0.278  Sum_probs=32.1

Q ss_pred             ccCCCEEEEEeCC---hHHHHHHHHHhhcCCEEEEEcCC
Q 045521           80 KISGRSVGIIGLG---RIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        80 ~l~g~tvGIvG~G---~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      .+.+|++.|.|.+   .||+.+|+.+...|++|+..+|+
T Consensus         2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~   40 (256)
T PRK12748          2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWS   40 (256)
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCC
Confidence            4689999999974   69999999999999999988876

>PRK08223 hypothetical protein; Validated

Probab=91.15  E-value=0.32  Score=41.39  Aligned_cols=36  Identities=19%  Similarity=0.256  Sum_probs=30.5

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSR  114 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r  114 (204)
                      ..|++++|.|+|+|.+|..+++.|...|.. +..+|.
T Consensus        23 ~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~   59 (287)
T PRK08223         23 QRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADF   59 (287)
T ss_pred             HHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeC
Confidence            469999999999999999999999988874 444443

>PRK06701 short chain dehydrogenase; Provisional

Probab=91.11  E-value=0.93  Score=38.09  Aligned_cols=38  Identities=32%  Similarity=0.223  Sum_probs=33.5

Q ss_pred             cccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..+.||++.|.| .|.||..+++.+..-|++|+..++..
T Consensus        42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~   80 (290)
T PRK06701         42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDE   80 (290)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            468899999999 58899999999999999998887754

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=91.09  E-value=0.47  Score=40.38  Aligned_cols=106  Identities=14%  Similarity=0.119  Sum_probs=64.4

Q ss_pred             ccccCCCEEEEEeCCh-HHHHHHHHHhhcCCEEEEEcCCCCCCCC----CC--------cceeCHHHHHHHHHcCCceEE
Q 045521           78 TTKISGRSVGIIGLGR-IGMAVAKRAEAFGCFISYRSRAEKPNTK----YK--------GALVDESELVSALLEDRLAAA  144 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~-IG~~va~~~~~fg~~V~~~~r~~~~~~~----~~--------G~lvd~~aL~~aL~~g~i~ga  144 (204)
                      +.+++||++.|||.|. +|+-+|.+|..-|+.|+.+.+..+.-.+    .+        ...|..    +.++.|.   .
T Consensus       154 ~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvi~avG~p~~v~~----~~vk~ga---v  226 (285)
T PRK10792        154 GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLRHHVRNADLLVVAVGKPGFIPG----EWIKPGA---I  226 (285)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCCHHHHHhhCCEEEEcCCCcccccH----HHcCCCc---E
Confidence            4579999999999999 9999999999999999876544322111    00        333443    4556664   4


Q ss_pred             EeeCCCCC----CCCCC-C---cCCCCceEEcccCCCCcHHHHHHHHHHHHHHHH
Q 045521          145 VLDVFEHE----PQVPE-E---LFGLENVVLLPHAASGTEETRKATADIVIENLE  191 (204)
Q Consensus       145 ~lDV~~~E----P~~~~-~---l~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~  191 (204)
                      .+||--+.    .+..+ .   ..+. --.+||=-||...-+...+.+.+++..+
T Consensus       227 VIDvGin~~~~gk~~GDvd~~~~~~~-a~~itPvPGGVGp~T~a~L~~N~~~a~~  280 (285)
T PRK10792        227 VIDVGINRLEDGKLVGDVEFETAAER-ASWITPVPGGVGPMTVATLLENTLQACE  280 (285)
T ss_pred             EEEcccccccCCCcCCCcCHHHHHhh-ccCcCCCCCCChHHHHHHHHHHHHHHHH
Confidence            67775332    11111 1   1111 3458998888776555455444444433

>PTZ00117 malate dehydrogenase; Provisional

Probab=91.07  E-value=0.47  Score=40.87  Aligned_cols=36  Identities=19%  Similarity=0.241  Sum_probs=30.6

Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcC-CEEEEEcCCC
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFG-CFISYRSRAE  116 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg-~~V~~~~r~~  116 (204)
                      +..++|+|||.|.+|..++..+...| .++..+|...
T Consensus         3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~   39 (319)
T PTZ00117          3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK   39 (319)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence            45789999999999999999988777 6888888754

>PRK12742 oxidoreductase; Provisional

Probab=91.05  E-value=0.53  Score=37.71  Aligned_cols=59  Identities=17%  Similarity=0.302  Sum_probs=41.4

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCC---------CC-CCcceeCHHHHHHHHHc
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPN---------TK-YKGALVDESELVSALLE  138 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~---------~~-~~G~lvd~~aL~~aL~~  138 (204)
                      .+.+|++.|.|. |.||+++++.+...|++|+...+.....         .. +...+-|++.+.++++.
T Consensus         3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~   72 (237)
T PRK12742          3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVQTDSADRDAVIDVVRK   72 (237)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHhCCeEEecCCCCHHHHHHHHHH
Confidence            478999999995 8999999999999999997665432110         00 11445566777666654

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=91.01  E-value=0.5  Score=38.19  Aligned_cols=36  Identities=28%  Similarity=0.480  Sum_probs=32.3

Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..|++|.|.|.|.+|+.++++++..|.+|+..+++.
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~  168 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSD  168 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH
Confidence            368899999999999999999999999998887753

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK05854 short chain dehydrogenase; Provisional

Probab=91.00  E-value=0.59  Score=39.80  Aligned_cols=38  Identities=24%  Similarity=0.424  Sum_probs=33.9

Q ss_pred             cccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+++||++.|.| .+.||+++|+.|..-|++|+..+|+.
T Consensus        10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~   48 (313)
T PRK05854         10 PDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNR   48 (313)
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            468999999999 57899999999999999999888864

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=91.00  E-value=0.72  Score=39.46  Aligned_cols=57  Identities=28%  Similarity=0.267  Sum_probs=42.6

Q ss_pred             cCCCEEEEEe-CChHHHHHHHHHhhcC--CEEEEEcCCCCCC---------CC---CCcceeCHHHHHHHHH
Q 045521           81 ISGRSVGIIG-LGRIGMAVAKRAEAFG--CFISYRSRAEKPN---------TK---YKGALVDESELVSALL  137 (204)
Q Consensus        81 l~g~tvGIvG-~G~IG~~va~~~~~fg--~~V~~~~r~~~~~---------~~---~~G~lvd~~aL~~aL~  137 (204)
                      +.||++.|.| .|.||+.+++.|..-|  .+|..++|.....         ..   +.+.+-|.+.+.++++
T Consensus         2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~   73 (324)
T TIGR03589         2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALR   73 (324)
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHh
Confidence            5789999999 4999999999998765  6888887654211         01   1278888888888775

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=90.96  E-value=0.43  Score=39.89  Aligned_cols=35  Identities=20%  Similarity=0.331  Sum_probs=31.4

Q ss_pred             cCCCEEEEEeCC---hHHHHHHHHHhhcCCEEEEEcCC
Q 045521           81 ISGRSVGIIGLG---RIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        81 l~g~tvGIvG~G---~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      +.||++.|.|.+   .||+++|+.+..-|++|+..+|+
T Consensus         3 l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~   40 (274)
T PRK08415          3 MKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLN   40 (274)
T ss_pred             cCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecC
Confidence            679999999984   79999999999999999887765

>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated

Probab=90.95  E-value=0.8  Score=40.97  Aligned_cols=59  Identities=10%  Similarity=0.175  Sum_probs=43.6

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCC--------C-------CcceeCHHHHHHHHHcCCce
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTK--------Y-------KGALVDESELVSALLEDRLA  142 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~--------~-------~G~lvd~~aL~~aL~~g~i~  142 (204)
                      |+|+|+|-|.+|..+++.++.+|++++.++........        +       .+...|.++|++..++.++-
T Consensus         3 ~~ililg~g~~~~~~~~~a~~lG~~~v~~~~~~~~~a~~~~~ad~~~~~~~~~~~~~~~d~~~l~~~~~~~~id   76 (450)
T PRK06111          3 QKVLIANRGEIAVRIIRTCQKLGIRTVAIYSEADRDALHVKMADEAYLIGGPRVQESYLNLEKIIEIAKKTGAE   76 (450)
T ss_pred             ceEEEECCcHHHHHHHHHHHHcCCeEEEEechhhccCcchhhCCEEEEcCCCCccccccCHHHHHHHHHHhCCC
Confidence            79999999999999999999999999887644322110        0       12445778888887776653

>PRK07985 oxidoreductase; Provisional

Probab=90.94  E-value=0.99  Score=38.02  Aligned_cols=36  Identities=19%  Similarity=0.158  Sum_probs=31.9

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      .+.||++.|.|. |.||+++|+.|...|++|+..++.
T Consensus        46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~   82 (294)
T PRK07985         46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLP   82 (294)
T ss_pred             ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCC
Confidence            488999999995 899999999999999999877654

>PRK08251 short chain dehydrogenase; Provisional

Probab=90.93  E-value=0.79  Score=37.01  Aligned_cols=34  Identities=21%  Similarity=0.260  Sum_probs=30.6

Q ss_pred             CCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           83 GRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        83 g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +|++.|.| .|.||+.+++.+..-|++|+..+|+.
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~   36 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRT   36 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            68899998 79999999999999999999888765

>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=90.93  E-value=0.46  Score=38.93  Aligned_cols=35  Identities=20%  Similarity=0.333  Sum_probs=31.1

Q ss_pred             ccCCCEEEEEeCC---hHHHHHHHHHhhcCCEEEEEcC
Q 045521           80 KISGRSVGIIGLG---RIGMAVAKRAEAFGCFISYRSR  114 (204)
Q Consensus        80 ~l~g~tvGIvG~G---~IG~~va~~~~~fg~~V~~~~r  114 (204)
                      .|.||++.|.|..   .||+++|+.+...|++|+..++
T Consensus         3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~   40 (256)
T PRK12859          3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYW   40 (256)
T ss_pred             CcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEec
Confidence            5899999999985   7999999999999999987643

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=90.92  E-value=0.53  Score=40.02  Aligned_cols=39  Identities=21%  Similarity=0.332  Sum_probs=34.0

Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~  116 (204)
                      +.++.+|++.|+|.|..+++++-.+...|+ +|..++|+.
T Consensus       119 ~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~  158 (288)
T PRK12749        119 GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD  158 (288)
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            346789999999999999999998888897 688899874

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=90.91  E-value=0.68  Score=37.17  Aligned_cols=37  Identities=27%  Similarity=0.440  Sum_probs=32.2

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +++++++.|.| .|.||+++++.+..-|..|...++..
T Consensus         3 ~~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~   40 (245)
T PRK12936          3 DLSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRV   40 (245)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCH
Confidence            47899999999 69999999999999999988776653

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=90.88  E-value=0.44  Score=41.31  Aligned_cols=35  Identities=37%  Similarity=0.485  Sum_probs=31.4

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~  116 (204)
                      .|.+|.|.|.|.||+..+++++.+|+ +|++.+++.
T Consensus       187 ~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~  222 (369)
T cd08301         187 KGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNP  222 (369)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence            58999999999999999999999999 788876643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>PRK07677 short chain dehydrogenase; Provisional

Probab=90.86  E-value=0.78  Score=37.32  Aligned_cols=34  Identities=29%  Similarity=0.322  Sum_probs=30.1

Q ss_pred             CCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           83 GRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        83 g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ||++.|.|. |.||+.+++.+...|++|+..+|+.
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~   35 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTK   35 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            689999996 6799999999999999999888764

>PRK09072 short chain dehydrogenase; Provisional

Probab=90.85  E-value=0.51  Score=38.69  Aligned_cols=37  Identities=27%  Similarity=0.365  Sum_probs=33.0

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+.++++.|.| .|.||+.+++.+...|.+|+..+|..
T Consensus         2 ~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~   39 (263)
T PRK09072          2 DLKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNA   39 (263)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence            36789999999 59999999999999999999988864

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=90.83  E-value=0.54  Score=40.06  Aligned_cols=38  Identities=18%  Similarity=0.197  Sum_probs=33.7

Q ss_pred             ccccCCCEEEEEeCCh-HHHHHHHHHhhcCCEEEEEcCC
Q 045521           78 TTKISGRSVGIIGLGR-IGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~-IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      +.++.||++.|||.++ +|+-+|.+|..-|+.|..+...
T Consensus       159 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~  197 (287)
T PRK14176        159 GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF  197 (287)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEecc
Confidence            4578999999999999 9999999999999999776543

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=90.80  E-value=0.46  Score=38.89  Aligned_cols=58  Identities=19%  Similarity=0.323  Sum_probs=42.6

Q ss_pred             cccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCC-------CCC---CcceeC-HHHHHHHH
Q 045521           79 TKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPN-------TKY---KGALVD-ESELVSAL  136 (204)
Q Consensus        79 ~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~-------~~~---~G~lvd-~~aL~~aL  136 (204)
                      ....+++|.|+| .|.||+.+++.|..-|.+|++..|.....       ...   .|.+-| .+++.+++
T Consensus        13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~   82 (251)
T PLN00141         13 ENVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAI   82 (251)
T ss_pred             ccccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHh
Confidence            456789999999 59999999999988899998877754221       011   155556 46777777

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=90.80  E-value=0.93  Score=40.52  Aligned_cols=37  Identities=19%  Similarity=0.262  Sum_probs=33.2

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      ..+.|+++.|.|. |.||+.+|+.+...|++|+..++.
T Consensus       206 ~~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~  243 (450)
T PRK08261        206 RPLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVP  243 (450)
T ss_pred             cCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3578999999997 999999999999999999988774

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=90.78  E-value=0.54  Score=38.33  Aligned_cols=37  Identities=35%  Similarity=0.467  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+.+|++.|.|. |.||+++++.|..-|++|+..+|+.
T Consensus         5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~   42 (260)
T PRK12823          5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSE   42 (260)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCch
Confidence            478999999996 8899999999999999999888863

>PRK07825 short chain dehydrogenase; Provisional

Probab=90.77  E-value=0.52  Score=38.84  Aligned_cols=37  Identities=30%  Similarity=0.455  Sum_probs=32.7

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++.|+++.|.|. |.||+++++.|..-|++|+..+|+.
T Consensus         2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~   39 (273)
T PRK07825          2 DLRGKVVAITGGARGIGLATARALAALGARVAIGDLDE   39 (273)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence            467899999995 8999999999999999998888754

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=90.75  E-value=0.43  Score=43.01  Aligned_cols=40  Identities=20%  Similarity=0.397  Sum_probs=35.7

Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      ..+++||+|+|||.|+.|-.++.-|..-|.+|..+-|++.
T Consensus       170 ~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~  209 (443)
T COG2072         170 PEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPP  209 (443)
T ss_pred             ccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCC
Confidence            4579999999999999999999999999999988777653

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=90.72  E-value=1  Score=40.17  Aligned_cols=67  Identities=24%  Similarity=0.224  Sum_probs=53.4

Q ss_pred             hCCcEEEeCCCCCchhHHHHHHHHHHHHHhhHHHhcCCCCCCccccccCCCEEEEEeCChHHHHHHHHHhhcCCE---EE
Q 045521           34 EKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCF---IS  110 (204)
Q Consensus        34 ~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~w~~~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~---V~  110 (204)
                      +..|+|.|.. .+.  +|=-+++-+++.+|-            .++.|+..+|.+.|.|.-|-.+++++++.|++   |+
T Consensus       165 ~~~IPvFhDD-qqG--Taiv~lA~llnalk~------------~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~  229 (432)
T COG0281         165 RMNIPVFHDD-QQG--TAIVTLAALLNALKL------------TGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIF  229 (432)
T ss_pred             cCCCCccccc-ccH--HHHHHHHHHHHHHHH------------hCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEE
Confidence            4579999974 333  344577888888863            46789999999999999999999999999994   77


Q ss_pred             EEcCC
Q 045521          111 YRSRA  115 (204)
Q Consensus       111 ~~~r~  115 (204)
                      .+|+.
T Consensus       230 ~~D~~  234 (432)
T COG0281         230 VVDRK  234 (432)
T ss_pred             EEecC
Confidence            77765

>PLN02427 UDP-apiose/xylose synthase

Probab=90.68  E-value=0.65  Score=40.61  Aligned_cols=39  Identities=15%  Similarity=0.080  Sum_probs=33.1

Q ss_pred             ccccCCCEEEEEe-CChHHHHHHHHHhhc-CCEEEEEcCCC
Q 045521           78 TTKISGRSVGIIG-LGRIGMAVAKRAEAF-GCFISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG-~G~IG~~va~~~~~f-g~~V~~~~r~~  116 (204)
                      |+.++.++|.|.| .|-||+.+++.|..- |.+|+.++|..
T Consensus         9 ~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~   49 (386)
T PLN02427          9 GKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYN   49 (386)
T ss_pred             CCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCc
Confidence            5667888999999 599999999999876 58999888653

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=90.64  E-value=1  Score=38.21  Aligned_cols=38  Identities=26%  Similarity=0.333  Sum_probs=33.3

Q ss_pred             ccccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           78 TTKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        78 ~~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      ..++.||++.|.|. |.||+++|+.|..-|++|+..++.
T Consensus         7 ~~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~   45 (306)
T PRK07792          7 TTDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVA   45 (306)
T ss_pred             CcCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCC
Confidence            35689999999995 789999999999999999888764

>PRK07904 short chain dehydrogenase; Provisional

Probab=90.63  E-value=1.2  Score=36.56  Aligned_cols=36  Identities=14%  Similarity=0.271  Sum_probs=30.3

Q ss_pred             CCCEEEEEe-CChHHHHHHHHHhhc-CCEEEEEcCCCC
Q 045521           82 SGRSVGIIG-LGRIGMAVAKRAEAF-GCFISYRSRAEK  117 (204)
Q Consensus        82 ~g~tvGIvG-~G~IG~~va~~~~~f-g~~V~~~~r~~~  117 (204)
                      .++++.|.| .|.||+++|+.+..- |++|+..+|+..
T Consensus         7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~   44 (253)
T PRK07904          7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDD   44 (253)
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcc
Confidence            578999999 589999999998877 499988888653

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=90.59  E-value=0.67  Score=37.45  Aligned_cols=58  Identities=26%  Similarity=0.302  Sum_probs=40.6

Q ss_pred             cCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEE-EcCCCCCC-----------CC---CCcceeCHHHHHHHHHc
Q 045521           81 ISGRSVGIIGL-GRIGMAVAKRAEAFGCFISY-RSRAEKPN-----------TK---YKGALVDESELVSALLE  138 (204)
Q Consensus        81 l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~-~~r~~~~~-----------~~---~~G~lvd~~aL~~aL~~  138 (204)
                      +.|+++.|.|- |.||+.+++.+...|.+|+. ..|...+.           ..   +.+.+-|++.+.+++++
T Consensus         2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   75 (250)
T PRK08063          2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQ   75 (250)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHH
Confidence            56899999994 89999999999999999865 45543210           00   11666677776666553

>PRK06128 oxidoreductase; Provisional

Probab=90.58  E-value=0.88  Score=38.30  Aligned_cols=36  Identities=28%  Similarity=0.274  Sum_probs=31.4

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      .++||++.|.|- |.||+.+|+.+..-|++|+...+.
T Consensus        52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~   88 (300)
T PRK06128         52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLP   88 (300)
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence            588999999995 899999999999999999765543

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=90.56  E-value=0.83  Score=40.34  Aligned_cols=61  Identities=20%  Similarity=0.231  Sum_probs=47.2

Q ss_pred             ccccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCC-------------CC---CCcceeCHHHHHHHHHc
Q 045521           78 TTKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPN-------------TK---YKGALVDESELVSALLE  138 (204)
Q Consensus        78 ~~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~-------------~~---~~G~lvd~~aL~~aL~~  138 (204)
                      +....+++|.|.|- |.||+.+++.|..-|.+|...+|.....             ..   ..|.+-|.+.+.++++.
T Consensus        55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~  132 (390)
T PLN02657         55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFS  132 (390)
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHH
Confidence            45578899999995 9999999999998999999888765321             01   11778888888888874

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=90.56  E-value=0.47  Score=41.20  Aligned_cols=34  Identities=35%  Similarity=0.512  Sum_probs=30.7

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRA  115 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~  115 (204)
                      .|.+|.|+|.|.||+..+++++.+|+ +|+..+++
T Consensus       186 ~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~  220 (368)
T cd08300         186 PGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDIN  220 (368)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            58999999999999999999999999 68877654

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=90.53  E-value=0.75  Score=41.93  Aligned_cols=33  Identities=12%  Similarity=0.021  Sum_probs=28.8

Q ss_pred             CEEEEEeCChHHHHHHHHHhhc--CCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAF--GCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~f--g~~V~~~~r~~  116 (204)
                      ++|+|+|+|.+|..+|-.+...  |.+|+++|...
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~   36 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV   36 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence            5799999999999999999754  78999998764

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.51  E-value=0.47  Score=42.56  Aligned_cols=82  Identities=24%  Similarity=0.230  Sum_probs=51.0

Q ss_pred             EEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCceEEEeeCCCCCCCCC-CCcCCCC
Q 045521           85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHEPQVP-EELFGLE  163 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~l~~~~  163 (204)
                      +|.|+|+|..|...|+.|...|.+|.++|+...+.         ...+.+.|++-.+. .-+.. +.++-.. ..+.+.+
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~---------~~~~~~~l~~~gi~-~~~g~-~~~~~~~~~~~~~~d   70 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPE---------LLERQQELEQEGIT-VKLGK-PLELESFQPWLDQPD   70 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchh---------hHHHHHHHHHcCCE-EEECC-ccchhhhhHHhhcCC
Confidence            68999999999999999999999999999765431         23333445442222 11111 1111000 1233457


Q ss_pred             ceEEcccCCCCcHH
Q 045521          164 NVVLLPHAASGTEE  177 (204)
Q Consensus       164 nvilTPH~a~~t~~  177 (204)
                      -|++||++.....+
T Consensus        71 ~vv~s~gi~~~~~~   84 (459)
T PRK02705         71 LVVVSPGIPWDHPT   84 (459)
T ss_pred             EEEECCCCCCCCHH
Confidence            79999999866554

>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=90.50  E-value=0.24  Score=39.36  Aligned_cols=60  Identities=23%  Similarity=0.246  Sum_probs=45.0

Q ss_pred             cccCCCEEEEEeCC-hHHHHHHHHHhhcCCEEEEEcCCCCCCC-------C----CCcceeCHHHHHHHHHc
Q 045521           79 TKISGRSVGIIGLG-RIGMAVAKRAEAFGCFISYRSRAEKPNT-------K----YKGALVDESELVSALLE  138 (204)
Q Consensus        79 ~~l~g~tvGIvG~G-~IG~~va~~~~~fg~~V~~~~r~~~~~~-------~----~~G~lvd~~aL~~aL~~  138 (204)
                      ..|.|+.|.+-|.| .||+++.+.|..-|++|+.+.|.+..-.       .    ..|.+-+.+++.++|-+
T Consensus         3 t~laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV~e~p~~I~Pi~~Dls~wea~~~~l~~   74 (245)
T KOG1207|consen    3 TSLAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKETPSLIIPIVGDLSAWEALFKLLVP   74 (245)
T ss_pred             ccccceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHHHHHHhhCCcceeeeEecccHHHHHHHhhcc
Confidence            35899999999987 5999999999999999999999763210       1    11555666776666543

>PRK12367 short chain dehydrogenase; Provisional

Probab=90.50  E-value=0.54  Score=38.68  Aligned_cols=38  Identities=26%  Similarity=0.435  Sum_probs=33.7

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..+.||++.|.|. |.||+++|+.+..-|++|+..+|..
T Consensus        10 ~~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~   48 (245)
T PRK12367         10 STWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSK   48 (245)
T ss_pred             HhhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCc
Confidence            4688999999996 7899999999999999998887764

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=90.48  E-value=0.6  Score=38.12  Aligned_cols=38  Identities=18%  Similarity=0.350  Sum_probs=33.8

Q ss_pred             cccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .++.||++.|.| .|.||+.+|+.+...|.+|+..+|+.
T Consensus         8 ~~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~   46 (259)
T PRK08213          8 FDLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKA   46 (259)
T ss_pred             hCcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence            457899999999 59999999999999999998888754

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=90.46  E-value=0.54  Score=38.10  Aligned_cols=38  Identities=21%  Similarity=0.228  Sum_probs=33.6

Q ss_pred             cccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..+++|++.|.| .|.||..+++.|...|++|+..+|+.
T Consensus         8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~   46 (247)
T PRK08945          8 DLLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTE   46 (247)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCH
Confidence            357899999998 68899999999999999999888864

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=90.44  E-value=0.5  Score=39.84  Aligned_cols=35  Identities=23%  Similarity=0.233  Sum_probs=30.6

Q ss_pred             CCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +||+|.|.| .|-||+.+++.|..-|.+|.+..|..
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~   38 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDP   38 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence            478999999 69999999999999999998776643

>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit

Probab=90.42  E-value=0.86  Score=40.96  Aligned_cols=31  Identities=13%  Similarity=0.188  Sum_probs=28.8

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSR  114 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r  114 (204)
                      |+|+|+|-|.++..+++.++.+|++|++++.
T Consensus         3 kkili~g~g~~~~~~~~aa~~lG~~vv~~~~   33 (449)
T TIGR00514         3 DKILIANRGEIALRILRACKELGIKTVAVHS   33 (449)
T ss_pred             ceEEEeCCCHHHHHHHHHHHHcCCeEEEEEC
Confidence            6999999999999999999999999988754

This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=90.42  E-value=0.52  Score=41.33  Aligned_cols=34  Identities=38%  Similarity=0.653  Sum_probs=31.0

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      .|++|.|.|.|.||+..+++++.+|++|+..+++
T Consensus       178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~  211 (375)
T PLN02178        178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRS  211 (375)
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCC
Confidence            5899999999999999999999999998877654

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=90.41  E-value=1.2  Score=39.64  Aligned_cols=60  Identities=23%  Similarity=0.308  Sum_probs=45.4

Q ss_pred             cccCCCEEEEEeC-----------------ChHHHHHHHHHhhcCCEEEEEcCCCCCCCCC---CcceeCHHHHHHHHHc
Q 045521           79 TKISGRSVGIIGL-----------------GRIGMAVAKRAEAFGCFISYRSRAEKPNTKY---KGALVDESELVSALLE  138 (204)
Q Consensus        79 ~~l~g~tvGIvG~-----------------G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~---~G~lvd~~aL~~aL~~  138 (204)
                      .++.||++.|-|-                 |.+|.++|+.+...|++|+++++........   .-.+-+.+++.+++++
T Consensus       184 ~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~~~~~~~~~~~dv~~~~~~~~~v~~  263 (399)
T PRK05579        184 KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVNLPTPAGVKRIDVESAQEMLDAVLA  263 (399)
T ss_pred             cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCccccCCCCcEEEccCCHHHHHHHHHH
Confidence            4589999999997                 7899999999999999999887654221111   1345677888888864

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=90.39  E-value=0.53  Score=37.62  Aligned_cols=38  Identities=26%  Similarity=0.343  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      ++.++++.|.| .|.||+.+++.+..-|.+|+..+|++.
T Consensus         2 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~   40 (246)
T PRK05653          2 SLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEE   40 (246)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            35688999999 499999999999999999998888753

>PRK08017 oxidoreductase; Provisional

Probab=90.39  E-value=0.53  Score=38.19  Aligned_cols=53  Identities=23%  Similarity=0.149  Sum_probs=38.7

Q ss_pred             CEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCC-----C---CCcceeCHHHHHHHH
Q 045521           84 RSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNT-----K---YKGALVDESELVSAL  136 (204)
Q Consensus        84 ~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~-----~---~~G~lvd~~aL~~aL  136 (204)
                      |++.|.|. |.||+++++.+..-|.+|+..+|+.....     .   +.+.+-|.+++.+++
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   64 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMNSLGFTGILLDLDDPESVERAA   64 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHHhCCCeEEEeecCCHHHHHHHH
Confidence            68999998 99999999999999999988887653211     1   115555666655444

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=90.38  E-value=0.97  Score=39.51  Aligned_cols=56  Identities=18%  Similarity=0.141  Sum_probs=42.0

Q ss_pred             CCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCC-------CC-CCcceeCHHHHHHHHH
Q 045521           82 SGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPN-------TK-YKGALVDESELVSALL  137 (204)
Q Consensus        82 ~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~-------~~-~~G~lvd~~aL~~aL~  137 (204)
                      .+|+|.|.|- |-||+.+++.|..-|.+|...+|.....       .. +.+.+-|.+.+.++++
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~   84 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTK   84 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHh
Confidence            5789999996 9999999999999999999988753211       01 1166667777776665

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=90.37  E-value=0.43  Score=41.22  Aligned_cols=34  Identities=32%  Similarity=0.354  Sum_probs=30.3

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSRA  115 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r~  115 (204)
                      .|++|.|.|.|.||+..++.++.+|++ |++.+++
T Consensus       176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~  210 (358)
T TIGR03451       176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDID  210 (358)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            589999999999999999999999995 8777654

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=90.31  E-value=0.61  Score=40.27  Aligned_cols=37  Identities=22%  Similarity=0.203  Sum_probs=30.8

Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcC-CEEEEEcCCCC
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFG-CFISYRSRAEK  117 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg-~~V~~~~r~~~  117 (204)
                      +..++|+|||.|.+|..+|..+..-| ++|..+|..+.
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~   41 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN   41 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence            45589999999999999999987667 48888887654

>PRK06196 oxidoreductase; Provisional

Probab=90.28  E-value=0.59  Score=39.66  Aligned_cols=38  Identities=16%  Similarity=0.334  Sum_probs=33.8

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..+.||++.|.|. |.||+++++.+..-|++|+..+|+.
T Consensus        22 ~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~   60 (315)
T PRK06196         22 HDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRP   60 (315)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3578999999996 8999999999999999999888864

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=90.27  E-value=0.62  Score=39.52  Aligned_cols=38  Identities=24%  Similarity=0.203  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCCC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAEK  117 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~~  117 (204)
                      ++.+|++.|+|.|..|++++--|...|+ +|..++|+..
T Consensus       124 ~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~  162 (283)
T PRK14027        124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTS  162 (283)
T ss_pred             CcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHH
Confidence            5778999999999999999999999998 5788888753

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=90.26  E-value=0.93  Score=36.92  Aligned_cols=34  Identities=12%  Similarity=0.124  Sum_probs=30.3

Q ss_pred             CCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           83 GRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        83 g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +|++.|.|- |.||+.+++.|...|++|+..+|+.
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~   36 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINS   36 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            689999996 7999999999999999998888764

>PRK08267 short chain dehydrogenase; Provisional

Probab=90.25  E-value=0.67  Score=37.83  Aligned_cols=54  Identities=24%  Similarity=0.113  Sum_probs=39.1

Q ss_pred             CEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCC---------C---CCcceeCHHHHHHHHH
Q 045521           84 RSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNT---------K---YKGALVDESELVSALL  137 (204)
Q Consensus        84 ~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~---------~---~~G~lvd~~aL~~aL~  137 (204)
                      |++.|.| -|.||+++++.+..-|.+|...+|+.....         .   +.+.+-|++++.++++
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~   68 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALA   68 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHH
Confidence            6889998 589999999999999999998887654210         0   1155666666655544

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=90.17  E-value=0.63  Score=38.14  Aligned_cols=36  Identities=28%  Similarity=0.314  Sum_probs=32.5

Q ss_pred             cCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           81 ISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        81 l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +.||++.|.|. |.||+++++.|...|++|+..+|+.
T Consensus         4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~   40 (263)
T PRK06200          4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSA   40 (263)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            68999999995 7899999999999999999888864

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=90.15  E-value=0.67  Score=37.40  Aligned_cols=36  Identities=19%  Similarity=0.246  Sum_probs=32.0

Q ss_pred             cCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           81 ISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        81 l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      |.++++.|.| .|.||+.+++.|..-|.+|+..+|+.
T Consensus         1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~   37 (250)
T TIGR03206         1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNR   37 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCH
Confidence            4689999999 58999999999999999998887764

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=90.15  E-value=0.44  Score=37.36  Aligned_cols=31  Identities=26%  Similarity=0.306  Sum_probs=26.8

Q ss_pred             EEEEEeCChHHHHHHHHHhhcCCE-EEEEcCC
Q 045521           85 SVGIIGLGRIGMAVAKRAEAFGCF-ISYRSRA  115 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r~  115 (204)
                      +|+|+|+|.+|..+++.|...|.. +..+|..
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D   32 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD   32 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            589999999999999999988885 7777654

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK06223 malate dehydrogenase; Reviewed

Probab=90.14  E-value=0.58  Score=39.81  Aligned_cols=33  Identities=21%  Similarity=0.274  Sum_probs=28.2

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~  116 (204)
                      ++|+|||.|.+|..+|..+...|. +|..+|+..
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~   36 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVE   36 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence            589999999999999999976554 898888844

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=90.14  E-value=0.61  Score=38.79  Aligned_cols=34  Identities=18%  Similarity=0.174  Sum_probs=28.1

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcC-----------CEEEEEcCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFG-----------CFISYRSRA  115 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg-----------~~V~~~~r~  115 (204)
                      +..+|.|||+|.+|..+++.|...|           .++..+|..
T Consensus        10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D   54 (244)
T TIGR03736        10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDD   54 (244)
T ss_pred             CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCC
Confidence            6789999999999999999997653           277777753

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=90.11  E-value=1.1  Score=38.51  Aligned_cols=55  Identities=24%  Similarity=0.178  Sum_probs=41.6

Q ss_pred             CEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCC-----------------CCC---CcceeCHHHHHHHHHc
Q 045521           84 RSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPN-----------------TKY---KGALVDESELVSALLE  138 (204)
Q Consensus        84 ~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~-----------------~~~---~G~lvd~~aL~~aL~~  138 (204)
                      |+|.|.| .|-||+.+++.|...|.+|+.++|.....                 ...   .|.+-|.+.+.++++.
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~   76 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDE   76 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHh
Confidence            5788888 59999999999999999999887754210                 001   1777788888777775

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=90.08  E-value=0.67  Score=37.65  Aligned_cols=37  Identities=16%  Similarity=0.323  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+.+|++.|.|. |.||+.+++.|..-|.+|+..+|.+
T Consensus         4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~   41 (262)
T PRK13394          4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQ   41 (262)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCh
Confidence            467999999997 9999999999999999998888765

>PRK07411 hypothetical protein; Validated

Probab=90.06  E-value=0.45  Score=42.20  Aligned_cols=36  Identities=25%  Similarity=0.222  Sum_probs=30.8

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSR  114 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r  114 (204)
                      ..|+.++|+|||+|.+|..+++.|...|.. +..+|.
T Consensus        34 ~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~   70 (390)
T PRK07411         34 KRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDF   70 (390)
T ss_pred             HHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            469999999999999999999999988874 555554

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=90.03  E-value=0.49  Score=34.58  Aligned_cols=32  Identities=19%  Similarity=0.226  Sum_probs=24.5

Q ss_pred             EEEEEe-CChHHHHHHHHHhh-cCCEEEE-EcCCC
Q 045521           85 SVGIIG-LGRIGMAVAKRAEA-FGCFISY-RSRAE  116 (204)
Q Consensus        85 tvGIvG-~G~IG~~va~~~~~-fg~~V~~-~~r~~  116 (204)
                      +|+||| .|.+|+.+.++|.. ..+++.. ++++.
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~   35 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR   35 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc
Confidence            699999 99999999999964 5666544 44443

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=89.95  E-value=0.62  Score=40.28  Aligned_cols=35  Identities=26%  Similarity=0.467  Sum_probs=31.4

Q ss_pred             CCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|.+|.|.|. |.||+..+++++.+|++|++.+++.
T Consensus       158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~  193 (348)
T PLN03154        158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSS  193 (348)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCH
Confidence            5899999999 9999999999999999998876543

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=89.90  E-value=0.54  Score=40.85  Aligned_cols=35  Identities=31%  Similarity=0.487  Sum_probs=31.0

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~  116 (204)
                      .|.+|.|.|.|.||+..+.+++..|+ +|+..+++.
T Consensus       191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~  226 (371)
T cd08281         191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNE  226 (371)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCH
Confidence            58999999999999999999999999 588776643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=89.90  E-value=0.63  Score=40.37  Aligned_cols=35  Identities=26%  Similarity=0.374  Sum_probs=31.0

Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCC
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRA  115 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~  115 (204)
                      -.|.+|.|+|.|.+|...+++++.+|+ +|++.+++
T Consensus       183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~  218 (365)
T cd08277         183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDIN  218 (365)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            358999999999999999999999999 68877654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>PRK07791 short chain dehydrogenase; Provisional

Probab=89.89  E-value=1.1  Score=37.54  Aligned_cols=37  Identities=30%  Similarity=0.281  Sum_probs=32.0

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+.||++.|.|. +.||+++|+.+...|++|+..++..
T Consensus         3 ~l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~   40 (286)
T PRK07791          3 LLDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGV   40 (286)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCc
Confidence            378999999995 7999999999999999998876643

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=89.89  E-value=0.98  Score=38.12  Aligned_cols=51  Identities=12%  Similarity=0.285  Sum_probs=39.9

Q ss_pred             CEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHc
Q 045521           84 RSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLE  138 (204)
Q Consensus        84 ~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~  138 (204)
                      ++|.|.|. |-||+.+++.|..-| +|+..++...   .+.|.+-|.+++.+++++
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~~---~~~~Dl~d~~~~~~~~~~   52 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPLG-NLIALDVHST---DYCGDFSNPEGVAETVRK   52 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhccC-CEEEeccccc---cccCCCCCHHHHHHHHHh
Confidence            47899995 999999999998888 8888887532   123677788888777774

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=89.85  E-value=0.66  Score=39.19  Aligned_cols=36  Identities=25%  Similarity=0.424  Sum_probs=31.7

Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      -.|.+|.|+|.|.+|+.++++++.+|.+|+..+++.
T Consensus       161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~  196 (330)
T cd08245         161 RPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSP  196 (330)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            357899999999999999999999999998876654

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=89.85  E-value=0.48  Score=42.05  Aligned_cols=36  Identities=19%  Similarity=0.218  Sum_probs=30.7

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSR  114 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r  114 (204)
                      ..|++++|.|+|+|.+|..+|+.|...|.. +..+|.
T Consensus        38 ~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~   74 (392)
T PRK07878         38 KRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEF   74 (392)
T ss_pred             HHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence            468999999999999999999999888874 566654

>PRK08177 short chain dehydrogenase; Provisional

Probab=89.78  E-value=0.69  Score=36.98  Aligned_cols=34  Identities=24%  Similarity=0.348  Sum_probs=30.4

Q ss_pred             CEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           84 RSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        84 ~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      |++.|.| .|.||+.+++.+...|++|+..+|+..
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~   36 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQ   36 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCc
Confidence            5788898 799999999999999999999988754

>PRK06198 short chain dehydrogenase; Provisional

Probab=89.76  E-value=0.67  Score=37.73  Aligned_cols=37  Identities=19%  Similarity=0.311  Sum_probs=33.0

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCE-EEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCF-ISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~-V~~~~r~~  116 (204)
                      .+.+|++.|.|. |.||+.+++.+...|++ |+..+|+.
T Consensus         3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~   41 (260)
T PRK06198          3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNA   41 (260)
T ss_pred             CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCH
Confidence            578999999995 89999999999999999 88888764

>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=89.76  E-value=0.99  Score=40.94  Aligned_cols=32  Identities=31%  Similarity=0.368  Sum_probs=26.5

Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhh-----cCCEEEEE
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEA-----FGCFISYR  112 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~-----fg~~V~~~  112 (204)
                      ...++|||-|||+||+.++|.+-.     -+++|.+.
T Consensus       125 ~~~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAI  161 (477)
T PRK08289        125 IEPRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAI  161 (477)
T ss_pred             CCCceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEE
Confidence            457899999999999999998742     46788776

>PLN02240 UDP-glucose 4-epimerase

Probab=89.74  E-value=0.78  Score=39.25  Aligned_cols=59  Identities=19%  Similarity=0.236  Sum_probs=42.9

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCC---------------CC---CCcceeCHHHHHHHHHc
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPN---------------TK---YKGALVDESELVSALLE  138 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~---------------~~---~~G~lvd~~aL~~aL~~  138 (204)
                      .+.+++|.|.| .|.||+.+++.|..-|.+|++.++.....               ..   ..+.+-|.+.+.++++.
T Consensus         2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~   79 (352)
T PLN02240          2 SLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFAS   79 (352)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHh
Confidence            46789999998 59999999999998899999887542110               01   11666677777666654

>PTZ00058 glutathione reductase; Provisional

Probab=89.69  E-value=0.79  Score=42.68  Aligned_cols=35  Identities=20%  Similarity=0.373  Sum_probs=31.9

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      +++|.|||-|.||-++|..+..+|.+|..+.+..+
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~  271 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNR  271 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccc
Confidence            79999999999999999999999999988877543

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=89.64  E-value=0.63  Score=33.39  Aligned_cols=32  Identities=25%  Similarity=0.235  Sum_probs=25.0

Q ss_pred             EEEEEeCChHHHHHHHHHhhc--CCEEE-EEcCCC
Q 045521           85 SVGIIGLGRIGMAVAKRAEAF--GCFIS-YRSRAE  116 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~f--g~~V~-~~~r~~  116 (204)
                      ++||||+|.+|+...+-+...  ++++. .+++++
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~   36 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDP   36 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSH
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCH
Confidence            799999999999999887765  56765 456654

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK08226 short chain dehydrogenase; Provisional

Probab=89.62  E-value=0.77  Score=37.48  Aligned_cols=37  Identities=24%  Similarity=0.360  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+.+|++.|.| .|.||+.+++.|..-|.+|+..+|+.
T Consensus         3 ~~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~   40 (263)
T PRK08226          3 KLTGKTALITGALQGIGEGIARVFARHGANLILLDISP   40 (263)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCH
Confidence            46899999999 78999999999999999999988864

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=89.60  E-value=0.68  Score=39.52  Aligned_cols=35  Identities=23%  Similarity=0.460  Sum_probs=31.3

Q ss_pred             CCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|.+|.|.|. |.+|+.++++++.+|++|+...++.
T Consensus       151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~  186 (338)
T cd08295         151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSD  186 (338)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            5899999998 9999999999999999998766543

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=89.60  E-value=1.8  Score=34.76  Aligned_cols=35  Identities=26%  Similarity=0.320  Sum_probs=30.9

Q ss_pred             CEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCC
Q 045521           84 RSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKP  118 (204)
Q Consensus        84 ~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~  118 (204)
                      ++|+||| -|++|+++++-++.=|-+|+++-|++.+
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K   36 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASK   36 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHh
Confidence            5799999 5999999999999999999998887644

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=89.55  E-value=0.8  Score=37.45  Aligned_cols=33  Identities=27%  Similarity=0.259  Sum_probs=28.2

Q ss_pred             CEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +++.|.|- |.||+++|+.+..-|++|+..+|+.
T Consensus         1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~   34 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNE   34 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            36778884 7899999999999999999888764

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=89.51  E-value=0.71  Score=39.30  Aligned_cols=35  Identities=26%  Similarity=0.374  Sum_probs=31.8

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|++|.|.|.|.+|+.+++.++++|++|++.+++.
T Consensus       163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~  197 (333)
T cd08296         163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGS  197 (333)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCh
Confidence            58899999999999999999999999998887653

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=89.47  E-value=0.75  Score=39.63  Aligned_cols=39  Identities=18%  Similarity=0.134  Sum_probs=34.0

Q ss_pred             ccccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           78 TTKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +++.++++|.|.| .|-||+.+++.|..-|.+|+..+|..
T Consensus         5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~   44 (353)
T PLN02896          5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDP   44 (353)
T ss_pred             ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            5678899999999 69999999999998899998876643

>PRK06270 homoserine dehydrogenase; Provisional

Probab=89.44  E-value=0.51  Score=41.07  Aligned_cols=29  Identities=21%  Similarity=0.292  Sum_probs=23.7

Q ss_pred             CEEEEEeCChHHHHHHHHHhhc----------CCEEEEE
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAF----------GCFISYR  112 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~f----------g~~V~~~  112 (204)
                      -+|||+|+|.||+.+++.++..          +++|.+.
T Consensus         3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai   41 (341)
T PRK06270          3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAI   41 (341)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEE
Confidence            3799999999999999998643          6777554

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=89.44  E-value=0.67  Score=39.88  Aligned_cols=34  Identities=21%  Similarity=0.324  Sum_probs=31.1

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRA  115 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~  115 (204)
                      .|++|.|.|.|.+|+.++++++.+|+ +|++.+++
T Consensus       177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~  211 (361)
T cd08231         177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGS  211 (361)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            68999999999999999999999999 88877654

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>PLN02358 glyceraldehyde-3-phosphate dehydrogenase

Probab=89.42  E-value=0.57  Score=40.82  Aligned_cols=29  Identities=31%  Similarity=0.347  Sum_probs=23.6

Q ss_pred             CEEEEEeCChHHHHHHHHHhhc-CCEEEEE
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAF-GCFISYR  112 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~f-g~~V~~~  112 (204)
                      .+|||+|+|+||+..++.+... +.++.++
T Consensus         6 lrVaI~G~GrIGr~~~r~~~~~~~velvaI   35 (338)
T PLN02358          6 IRIGINGFGRIGRLVARVVLQRDDVELVAV   35 (338)
T ss_pred             eEEEEEeecHHHHHHHHHHhhCCCcEEEEE
Confidence            5999999999999999987643 5777653

>PLN02572 UDP-sulfoquinovose synthase

Probab=89.35  E-value=1.6  Score=39.24  Aligned_cols=37  Identities=22%  Similarity=0.229  Sum_probs=32.7

Q ss_pred             ccccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcC
Q 045521           78 TTKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSR  114 (204)
Q Consensus        78 ~~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r  114 (204)
                      ...+.+++|.|.| .|-||+.+++.|..-|.+|..+++
T Consensus        42 ~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~   79 (442)
T PLN02572         42 SSSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDN   79 (442)
T ss_pred             CccccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEec
Confidence            3568899999999 599999999999999999988764

>PRK07035 short chain dehydrogenase; Provisional

Probab=89.32  E-value=0.84  Score=37.01  Aligned_cols=37  Identities=27%  Similarity=0.337  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+.+|++.|.| -|.||+++++.+..-|++|+..+|+.
T Consensus         5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~   42 (252)
T PRK07035          5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKL   42 (252)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999999 68999999999999999999888764

>PRK08643 acetoin reductase; Validated

Probab=89.29  E-value=1  Score=36.60  Aligned_cols=34  Identities=26%  Similarity=0.265  Sum_probs=30.0

Q ss_pred             CCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           83 GRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        83 g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +|++.|.| -|.||+.+++.+..-|++|+..+|+.
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~   36 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNE   36 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            68888988 58999999999999999998888764

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=89.29  E-value=0.75  Score=39.25  Aligned_cols=35  Identities=34%  Similarity=0.626  Sum_probs=31.5

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|.++.|.|.|.+|+.++++++.+|++|++.+++.
T Consensus       169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~  203 (337)
T cd05283         169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSP  203 (337)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCH
Confidence            57899999999999999999999999998877653

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>PRK07201 short chain dehydrogenase; Provisional

Probab=89.25  E-value=0.81  Score=42.80  Aligned_cols=37  Identities=27%  Similarity=0.332  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .++||++.|.|- |.||+++++.+..-|++|+..+|+.
T Consensus       368 ~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~  405 (657)
T PRK07201        368 PLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNG  405 (657)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            577999999995 8899999999999999999988764

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=89.17  E-value=0.83  Score=34.53  Aligned_cols=77  Identities=22%  Similarity=0.155  Sum_probs=45.4

Q ss_pred             CEEEEEeC-ChHHHHHHHHHh--hcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCcC
Q 045521           84 RSVGIIGL-GRIGMAVAKRAE--AFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELF  160 (204)
Q Consensus        84 ~tvGIvG~-G~IG~~va~~~~--~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l~  160 (204)
                      .+|+|||. |++|+.+|-.+.  .+.-++..+|+....   ..|...|.++....+......      ...   ....+.
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~---~~g~a~Dl~~~~~~~~~~~~i------~~~---~~~~~~   68 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDK---AEGEALDLSHASAPLPSPVRI------TSG---DYEALK   68 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHH---HHHHHHHHHHHHHGSTEEEEE------EES---SGGGGT
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCccc---ceeeehhhhhhhhhccccccc------ccc---cccccc
Confidence            37999999 999999999885  566688888876321   014444444444333221111      111   113466


Q ss_pred             CCCceEEcccCC
Q 045521          161 GLENVVLLPHAA  172 (204)
Q Consensus       161 ~~~nvilTPH~a  172 (204)
                      +.+=|++|--..
T Consensus        69 ~aDivvitag~~   80 (141)
T PF00056_consen   69 DADIVVITAGVP   80 (141)
T ss_dssp             TESEEEETTSTS
T ss_pred             cccEEEEecccc
Confidence            677788875443

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=89.09  E-value=0.84  Score=38.42  Aligned_cols=35  Identities=23%  Similarity=0.408  Sum_probs=31.3

Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      -.|.+|.|.|.|.+|+.+++.++.+|.+|++.+++
T Consensus       154 ~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~  188 (319)
T cd08242         154 TPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRH  188 (319)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCC
Confidence            35899999999999999999999999998877653

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=89.07  E-value=0.74  Score=39.36  Aligned_cols=37  Identities=16%  Similarity=0.094  Sum_probs=32.5

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++.+++|.|.|. |-||+.+++.|..-|.+|+..+|..
T Consensus         3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~   40 (340)
T PLN02653          3 DPPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRS   40 (340)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeccc
Confidence            567899999995 9999999999999999998877643

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=89.06  E-value=2  Score=38.12  Aligned_cols=49  Identities=29%  Similarity=0.321  Sum_probs=39.4

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHH
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALL  137 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~  137 (204)
                      .|.+|.++=.|.-|.+.+++++.+|.+|..++...       |+-+|.+++.++|+
T Consensus        79 pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~w-------g~~v~p~~v~~~L~  127 (383)
T COG0075          79 PGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEW-------GEAVDPEEVEEALD  127 (383)
T ss_pred             CCCeEEEEeCChHHHHHHHHHHHhCCceEEEeCCC-------CCCCCHHHHHHHHh
Confidence            58899999999999999999999999998877654       44455555555555

>PRK07236 hypothetical protein; Provisional

Probab=89.03  E-value=1.5  Score=38.29  Aligned_cols=57  Identities=23%  Similarity=0.195  Sum_probs=40.9

Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcc-eeCHHHHHHHHHc
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGA-LVDESELVSALLE  138 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~-lvd~~aL~~aL~~  138 (204)
                      +...+|.|||.|-.|..+|..|+..|.+|..+.+.+.......+. .+.. ...+.|++
T Consensus         4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~-~~~~~l~~   61 (386)
T PRK07236          4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQP-ELLRALAE   61 (386)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCH-HHHHHHHH
Confidence            456899999999999999999999999999998875432222122 2343 35556654

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=88.92  E-value=0.3  Score=43.33  Aligned_cols=35  Identities=23%  Similarity=0.437  Sum_probs=32.0

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      ...+|+||+|-.|+.+|.-...-|.+|.+|+|+..
T Consensus         3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~   37 (473)
T COG0362           3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTE   37 (473)
T ss_pred             ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHH
Confidence            45799999999999999999999999999999864

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=88.91  E-value=0.74  Score=37.84  Aligned_cols=34  Identities=29%  Similarity=0.451  Sum_probs=30.9

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSRA  115 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r~  115 (204)
                      .|.++.|.|.|.+|+.+++.++.+|++ |+..+++
T Consensus        97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~  131 (277)
T cd08255          97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPD  131 (277)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCC
Confidence            689999999999999999999999999 8877754

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional

Probab=88.91  E-value=0.61  Score=40.92  Aligned_cols=30  Identities=30%  Similarity=0.255  Sum_probs=23.7

Q ss_pred             CEEEEEeCChHHHHHHHHHhhc-----CCEEEEEc
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAF-----GCFISYRS  113 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~f-----g~~V~~~~  113 (204)
                      .+|||=|||+|||.+.|.+-.-     +++|.+..
T Consensus         4 ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAIN   38 (361)
T PTZ00434          4 IKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVV   38 (361)
T ss_pred             eEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEe
Confidence            4899999999999999986532     46776654

>PRK12827 short chain dehydrogenase; Provisional

Probab=88.86  E-value=1.3  Score=35.60  Aligned_cols=36  Identities=31%  Similarity=0.316  Sum_probs=31.3

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      .+.++++.|.| .|.||+.+|+.|..-|.+|+..++.
T Consensus         3 ~~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~   39 (249)
T PRK12827          3 SLDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIH   39 (249)
T ss_pred             CcCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCc
Confidence            36789999999 6999999999999999999886653

>PRK12862 malic enzyme; Reviewed

Probab=88.86  E-value=2.2  Score=41.24  Aligned_cols=65  Identities=18%  Similarity=0.099  Sum_probs=52.4

Q ss_pred             CcEEEeCCCCCchhHHHHHHHHHHHHHhhHHHhcCCCCCCccccccCCCEEEEEeCChHHHHHHHHHhhcCC---EEEEE
Q 045521           36 GIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGC---FISYR  112 (204)
Q Consensus        36 gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~w~~~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~---~V~~~  112 (204)
                      +|++.|. +....  |=-+++-+++.+|-            .++.|.+.+|.|.|.|.-|-.+|+++...|.   +++.+
T Consensus       161 ~ip~f~D-D~~GT--a~v~la~l~~a~~~------------~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~  225 (763)
T PRK12862        161 KIPVFHD-DQHGT--AIIVAAALLNGLKL------------VGKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVT  225 (763)
T ss_pred             CCceEec-CcccH--HHHHHHHHHHHHHH------------hCCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEE
Confidence            6999998 44333  44478888888874            3567999999999999999999999999999   67777


Q ss_pred             cCC
Q 045521          113 SRA  115 (204)
Q Consensus       113 ~r~  115 (204)
                      |+.
T Consensus       226 D~~  228 (763)
T PRK12862        226 DIK  228 (763)
T ss_pred             cCC
Confidence            754

>PRK05586 biotin carboxylase; Validated

Probab=88.81  E-value=1.3  Score=39.91  Aligned_cols=29  Identities=14%  Similarity=0.210  Sum_probs=26.5

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEE
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYR  112 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~  112 (204)
                      |+|+|+|-|.+|.++++.++.+|++++.+
T Consensus         3 kkvli~g~G~~~~~~~~aa~~lG~~~v~v   31 (447)
T PRK05586          3 KKILIANRGEIAVRIIRACREMGIETVAV   31 (447)
T ss_pred             ceEEEECCcHHHHHHHHHHHHcCCcEEEE
Confidence            79999999999999999999999996544

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=88.81  E-value=0.87  Score=37.94  Aligned_cols=33  Identities=24%  Similarity=0.309  Sum_probs=26.5

Q ss_pred             CEEEEEeC-ChHHHHHHHHHhhc-CCEEEE-EcCCC
Q 045521           84 RSVGIIGL-GRIGMAVAKRAEAF-GCFISY-RSRAE  116 (204)
Q Consensus        84 ~tvGIvG~-G~IG~~va~~~~~f-g~~V~~-~~r~~  116 (204)
                      .+|+|+|+ |++|+.+++.+... ++++.+ +++..
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~   37 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPG   37 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC
Confidence            47999998 99999999998764 688765 55544

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=88.81  E-value=1.5  Score=36.97  Aligned_cols=47  Identities=26%  Similarity=0.358  Sum_probs=35.1

Q ss_pred             EEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHH
Q 045521           85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESE  131 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~a  131 (204)
                      .|.|||.|-.|..+|..|+..|.+|+.+.+.+.+.....|..+...+
T Consensus         3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~   49 (356)
T PF01494_consen    3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNS   49 (356)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHH
T ss_pred             eEEEECCCHHHHHHHHHHHhcccccccchhccccccccccccccccc
Confidence            58999999999999999999999999999876554333355555444

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=88.76  E-value=0.76  Score=39.80  Aligned_cols=35  Identities=37%  Similarity=0.507  Sum_probs=31.0

Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      ..|.+|.|.|.|.||+.++++++..|++|+..+++
T Consensus       179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~  213 (357)
T PLN02514        179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSS  213 (357)
T ss_pred             CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCC
Confidence            36899999999999999999999999998776654

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=88.74  E-value=2  Score=36.50  Aligned_cols=54  Identities=24%  Similarity=0.260  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHhhHHHhcCCCCCCccccccCCCEEEEEeCChHHHHHHHHHhhc----CC-------EEEEEcCC
Q 045521           50 VADAAIGLTLAVLRRFVRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAF----GC-------FISYRSRA  115 (204)
Q Consensus        50 vAE~~l~~~L~~~R~~~~~~~w~~~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~f----g~-------~V~~~~r~  115 (204)
                      +|=-+++-+|+.+|-            .+..|.+.++.|+|.|..|-.+|+++...    |+       +++.+|+.
T Consensus         4 Ta~V~lAgllnAlk~------------~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~   68 (279)
T cd05312           4 TAAVALAGLLAALRI------------TGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSK   68 (279)
T ss_pred             HHHHHHHHHHHHHHH------------hCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCC
Confidence            344567777877764            35679999999999999999999999876    87       67777765

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.72  E-value=0.88  Score=40.76  Aligned_cols=79  Identities=27%  Similarity=0.303  Sum_probs=49.8

Q ss_pred             cCC-CEEEEEeCChHHHHHHHHHhhc--CCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCC
Q 045521           81 ISG-RSVGIIGLGRIGMAVAKRAEAF--GCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHEPQVPE  157 (204)
Q Consensus        81 l~g-~tvGIvG~G~IG~~va~~~~~f--g~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~  157 (204)
                      +.+ ++|.|+|+|.+|...++.+...  |.+|.++|....+.            ..+.|++| +     .++..+. .+.
T Consensus         4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~------------~~~~l~~g-~-----~~~~g~~-~~~   64 (438)
T PRK04663          4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPP------------GQEQLPED-V-----ELHSGGW-NLE   64 (438)
T ss_pred             ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCch------------hHHHhhcC-C-----EEEeCCC-ChH
Confidence            566 8899999999999999999877  58899988653210            11224332 1     1211110 011


Q ss_pred             CcCCCCceEEcccCCCCcHHH
Q 045521          158 ELFGLENVVLLPHAASGTEET  178 (204)
Q Consensus       158 ~l~~~~nvilTPH~a~~t~~~  178 (204)
                      .+-+.+-|++||++.....+.
T Consensus        65 ~~~~~d~vV~SpgI~~~~p~~   85 (438)
T PRK04663         65 WLLEADLVVTNPGIALATPEI   85 (438)
T ss_pred             HhccCCEEEECCCCCCCCHHH
Confidence            233467799999998766543

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=88.66  E-value=2.1  Score=41.22  Aligned_cols=66  Identities=21%  Similarity=0.165  Sum_probs=52.6

Q ss_pred             CCcEEEeCCCCCchhHHHHHHHHHHHHHhhHHHhcCCCCCCccccccCCCEEEEEeCChHHHHHHHHHhhcCC---EEEE
Q 045521           35 KGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGC---FISY  111 (204)
Q Consensus        35 ~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~w~~~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~---~V~~  111 (204)
                      .+|+|.|. +.+..  |=-+++-+++.+|-            .++.+.+.++.|.|.|.-|-.+++++...|+   +|+.
T Consensus       152 ~~ip~f~D-D~~GT--a~v~lA~l~na~~~------------~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~  216 (752)
T PRK07232        152 MDIPVFHD-DQHGT--AIISAAALLNALEL------------VGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIV  216 (752)
T ss_pred             cCCCeecc-ccchH--HHHHHHHHHHHHHH------------hCCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEE
Confidence            36999998 44433  44478888888874            3567999999999999999999999999998   6777


Q ss_pred             EcCC
Q 045521          112 RSRA  115 (204)
Q Consensus       112 ~~r~  115 (204)
                      +|+.
T Consensus       217 ~D~~  220 (752)
T PRK07232        217 CDSK  220 (752)
T ss_pred             EcCC
Confidence            7764

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=88.61  E-value=1.2  Score=34.56  Aligned_cols=39  Identities=15%  Similarity=0.257  Sum_probs=29.7

Q ss_pred             ccccCCCEEEEEeCCh-HHHHHHHHHhhcCCEEEEEcCCC
Q 045521           78 TTKISGRSVGIIGLGR-IGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~-IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +.+++||++.|||-+. +|+-++.+|..-|+.|.....+.
T Consensus        31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T   70 (160)
T PF02882_consen   31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT   70 (160)
T ss_dssp             T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS
T ss_pred             CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC
Confidence            4579999999999985 89999999999999997765443

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=88.60  E-value=0.77  Score=39.33  Aligned_cols=34  Identities=32%  Similarity=0.456  Sum_probs=29.9

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSRA  115 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r~  115 (204)
                      .|++|.|.|.|.+|+..++.++.+|++ |+..+++
T Consensus       160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~  194 (347)
T PRK10309        160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDIN  194 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence            589999999999999999999999998 5666553

>PLN02780 ketoreductase/ oxidoreductase

Probab=88.59  E-value=1  Score=38.59  Aligned_cols=36  Identities=19%  Similarity=0.121  Sum_probs=32.2

Q ss_pred             cCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           81 ISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        81 l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..|+++.|.|. |.||+++|+.+..-|++|+..+|+.
T Consensus        51 ~~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~   87 (320)
T PLN02780         51 KYGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNP   87 (320)
T ss_pred             ccCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCH
Confidence            36999999995 7899999999999999999988864

>PRK12861 malic enzyme; Reviewed

Probab=88.56  E-value=1.7  Score=41.85  Aligned_cols=65  Identities=18%  Similarity=0.081  Sum_probs=52.4

Q ss_pred             CcEEEeCCCCCchhHHHHHHHHHHHHHhhHHHhcCCCCCCccccccCCCEEEEEeCChHHHHHHHHHhhcCC---EEEEE
Q 045521           36 GIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGC---FISYR  112 (204)
Q Consensus        36 gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~w~~~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~---~V~~~  112 (204)
                      .|++.|. +....  |=-+++-+++.+|-            .++.|.+.+|.+.|.|.-|..+++++...|.   +++.+
T Consensus       157 ~ipvf~D-D~qGT--a~v~lA~llnal~~------------~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~  221 (764)
T PRK12861        157 KIPVFHD-DQHGT--AITVSAAFINGLKV------------VGKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVT  221 (764)
T ss_pred             CCCeecc-ccchH--HHHHHHHHHHHHHH------------hCCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEE
Confidence            7999998 44333  44478888888874            3567999999999999999999999999998   68777


Q ss_pred             cCC
Q 045521          113 SRA  115 (204)
Q Consensus       113 ~r~  115 (204)
                      |+.
T Consensus       222 D~~  224 (764)
T PRK12861        222 DIE  224 (764)
T ss_pred             cCC
Confidence            754

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=88.55  E-value=1  Score=34.70  Aligned_cols=35  Identities=14%  Similarity=0.288  Sum_probs=31.6

Q ss_pred             CCCEEEEEe--CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIG--LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG--~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|+||+++|  .+++.+.++..+..||+++.+..+..
T Consensus         1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~   37 (158)
T PF00185_consen    1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEG   37 (158)
T ss_dssp             TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGG
T ss_pred             CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCc
Confidence            489999999  48999999999999999998888865

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=88.48  E-value=1.8  Score=36.70  Aligned_cols=58  Identities=17%  Similarity=0.181  Sum_probs=41.9

Q ss_pred             CEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCC--------------CC-CCcceeCHHHHHHHHHcCCc
Q 045521           84 RSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPN--------------TK-YKGALVDESELVSALLEDRL  141 (204)
Q Consensus        84 ~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~--------------~~-~~G~lvd~~aL~~aL~~g~i  141 (204)
                      ++|.|.| .|.||+.+++.|..-|.+|+++++..+..              .. +.+.+-|.+++.++++...+
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~   74 (338)
T PRK10675          1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDHAI   74 (338)
T ss_pred             CeEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCCC
Confidence            4788999 69999999999998899998886532211              00 12677788888888875433

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=88.44  E-value=1.9  Score=36.82  Aligned_cols=66  Identities=23%  Similarity=0.222  Sum_probs=49.5

Q ss_pred             ccccCCCEEEEEeCC-hHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHH-cCCceEEEeeCCCCCC
Q 045521           78 TTKISGRSVGIIGLG-RIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALL-EDRLAAAVLDVFEHEP  153 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G-~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~-~g~i~ga~lDV~~~EP  153 (204)
                      .++++|++|.|=|-| .+|+++|.-+...|+++..+|...+..          +.-.+-++ .|+..++--|+.+.|-
T Consensus        33 ~k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~----------~etv~~~~~~g~~~~y~cdis~~ee  100 (300)
T KOG1201|consen   33 LKSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGN----------EETVKEIRKIGEAKAYTCDISDREE  100 (300)
T ss_pred             hhhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccch----------HHHHHHHHhcCceeEEEecCCCHHH
Confidence            468999999999987 589999999999999999998876432          11222222 2677888888887653

>PRK07024 short chain dehydrogenase; Provisional

Probab=88.41  E-value=0.86  Score=37.23  Aligned_cols=34  Identities=26%  Similarity=0.265  Sum_probs=29.9

Q ss_pred             CCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           83 GRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        83 g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++++.|.| .|.||+++++.|..-|++|+..+|+.
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~   36 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGATLGLVARRT   36 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            47899998 78999999999999999999888754

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=88.40  E-value=0.87  Score=40.63  Aligned_cols=36  Identities=28%  Similarity=0.392  Sum_probs=32.0

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .+++|.|||.|.+|-++|..++.+|.+|..+.+...
T Consensus       156 ~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~  191 (438)
T PRK07251        156 LPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAST  191 (438)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc
Confidence            368999999999999999999999999988877543

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=88.38  E-value=0.72  Score=39.68  Aligned_cols=35  Identities=14%  Similarity=0.263  Sum_probs=29.6

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhh-cC-CEEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEA-FG-CFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~-fg-~~V~~~~r~~  116 (204)
                      .|.+|.|+|.|.||...+..++. +| .+|+..+++.
T Consensus       163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~  199 (341)
T cd08237         163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQ  199 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcH
Confidence            58999999999999999999985 54 6788877654

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic

Probab=88.37  E-value=2.1  Score=38.01  Aligned_cols=59  Identities=22%  Similarity=0.237  Sum_probs=42.2

Q ss_pred             cccCCCEEEEEeC-----------------ChHHHHHHHHHhhcCCEEEEEcCCCCCCC-CC--CcceeCHHHHHHHHH
Q 045521           79 TKISGRSVGIIGL-----------------GRIGMAVAKRAEAFGCFISYRSRAEKPNT-KY--KGALVDESELVSALL  137 (204)
Q Consensus        79 ~~l~g~tvGIvG~-----------------G~IG~~va~~~~~fg~~V~~~~r~~~~~~-~~--~G~lvd~~aL~~aL~  137 (204)
                      .++.||++.|-|-                 |.+|.++|+.+...|++|+++.+...... .+  ...+-+.+++++++.
T Consensus       181 ~~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~  259 (390)
T TIGR00521       181 EDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLLTPPGVKSIKVSTAEEMLEAAL  259 (390)
T ss_pred             cccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccCCCCCcEEEEeccHHHHHHHHH
Confidence            4589999999997                 57999999999999999988765432211 11  145556777755444

This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=88.27  E-value=0.81  Score=39.62  Aligned_cols=33  Identities=27%  Similarity=0.431  Sum_probs=28.5

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSR  114 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r  114 (204)
                      .|.+|.|+|.|.||-.....+|+||+. |++.+-
T Consensus       169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~  202 (354)
T KOG0024|consen  169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDL  202 (354)
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeec
Confidence            589999999999999999999999985 655543

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=88.16  E-value=0.94  Score=42.82  Aligned_cols=37  Identities=30%  Similarity=0.396  Sum_probs=33.4

Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      -.|++|.|||.|..|...|..|...|.+|+.+++...
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~  361 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPE  361 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            4699999999999999999999999999999987543

>PRK06720 hypothetical protein; Provisional

Probab=88.14  E-value=1.1  Score=34.83  Aligned_cols=37  Identities=22%  Similarity=0.246  Sum_probs=32.4

Q ss_pred             ccCCCEEEEEeCC-hHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGLG-RIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~G-~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+.||++.|.|-+ .||+.+++.+..-|++|+..+++.
T Consensus        13 ~l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~   50 (169)
T PRK06720         13 KLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQ   50 (169)
T ss_pred             ccCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCH
Confidence            4789999999975 599999999999999998888753

>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]

Probab=88.14  E-value=1.3  Score=38.34  Aligned_cols=57  Identities=21%  Similarity=0.300  Sum_probs=42.3

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC------CCCCcceeCHHHHHHHHHc
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN------TKYKGALVDESELVSALLE  138 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~------~~~~G~lvd~~aL~~aL~~  138 (204)
                      ..++|.++|-|..|+++|--++.+|.+|+.+||+....      ..|.....|-++|-+-++.
T Consensus        11 ~a~kvmLLGSGELGKEvaIe~QRLG~eViAVDrY~~APAmqVAhrs~Vi~MlD~~al~avv~r   73 (394)
T COG0027          11 QATKVMLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVIDMLDGDALRAVVER   73 (394)
T ss_pred             CCeEEEEecCCccchHHHHHHHhcCCEEEEecCcCCChhhhhhhheeeeeccCHHHHHHHHHh
Confidence            45789999999999999999999999999999986532      1233444555555544443

>PRK07102 short chain dehydrogenase; Provisional

Probab=88.13  E-value=1.5  Score=35.36  Aligned_cols=33  Identities=30%  Similarity=0.361  Sum_probs=29.7

Q ss_pred             CEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      |++.|.| .|.||+.+++.+..-|.+|+..+|+.
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~   35 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGARLYLAARDV   35 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            6888999 69999999999999999999888865

>PRK06141 ornithine cyclodeaminase; Validated

Probab=88.13  E-value=0.94  Score=38.89  Aligned_cols=38  Identities=13%  Similarity=0.129  Sum_probs=30.3

Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhh-cC-CEEEEEcCCCCC
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEA-FG-CFISYRSRAEKP  118 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~-fg-~~V~~~~r~~~~  118 (204)
                      ...++|+|||.|..|+..++.+.. ++ -+|..|+|++..
T Consensus       123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~  162 (314)
T PRK06141        123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAK  162 (314)
T ss_pred             CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHH
Confidence            357899999999999999985543 55 568999997643

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=88.13  E-value=0.98  Score=38.16  Aligned_cols=35  Identities=26%  Similarity=0.369  Sum_probs=30.5

Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcCC
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSRA  115 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r~  115 (204)
                      -.|.+|.|+|.|.+|+.+++++++.|++ |...+++
T Consensus       158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~  193 (334)
T cd08234         158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPN  193 (334)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCC
Confidence            3578999999999999999999999998 7766654

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional

Probab=88.10  E-value=2  Score=38.99  Aligned_cols=59  Identities=14%  Similarity=0.211  Sum_probs=41.9

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC------C-C-C-Cc------ceeCHHHHHHHHHcCCce
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN------T-K-Y-KG------ALVDESELVSALLEDRLA  142 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~------~-~-~-~G------~lvd~~aL~~aL~~g~i~  142 (204)
                      |+|.|+|-|.|+.++++.++.+|.+++.+.......      . . + .|      ...|.++|+++.++-++-
T Consensus         6 ~~vLi~~~geia~~ii~aa~~lG~~~v~~~s~~d~~~~~~~~aD~~~~i~p~~~~~~y~d~~~i~~~a~~~~~d   79 (467)
T PRK12833          6 RKVLVANRGEIAVRIIRAARELGMRTVAACSDADRDSLAARMADEAVHIGPSHAAKSYLNPAAILAAARQCGAD   79 (467)
T ss_pred             cEEEEECCcHHHHHHHHHHHHcCCeEEEEECCCCCCChhHHhCCEEEecCCCCccccccCHHHHHHHHHHhCCC
Confidence            799999999999999999999999987543211110      0 0 1 02      456778888888776653

>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional

Probab=88.07  E-value=1.1  Score=38.29  Aligned_cols=36  Identities=25%  Similarity=0.382  Sum_probs=32.3

Q ss_pred             ccccCCCEEEEEeCC---hHHHHHHHHHhhcCCEEEEEc
Q 045521           78 TTKISGRSVGIIGLG---RIGMAVAKRAEAFGCFISYRS  113 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G---~IG~~va~~~~~fg~~V~~~~  113 (204)
                      ..++.||++.|-|.|   .||+++|+.|..-|++|+..+
T Consensus         3 ~~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~   41 (299)
T PRK06300          3 KIDLTGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGT   41 (299)
T ss_pred             CcCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEe
Confidence            357899999999996   999999999999999998754

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=88.04  E-value=1.3  Score=35.57  Aligned_cols=37  Identities=30%  Similarity=0.328  Sum_probs=32.7

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+.++++.|.| .|.||+.+++.|..-|++|+..+|+.
T Consensus         4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~   41 (239)
T PRK07666          4 SLQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTE   41 (239)
T ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            46789999999 57999999999999999999988865

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=88.04  E-value=0.97  Score=40.40  Aligned_cols=37  Identities=22%  Similarity=0.416  Sum_probs=33.0

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .++||++.|.|. |.||+++++.+..-|++|+..+|+.
T Consensus       175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~  212 (406)
T PRK07424        175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNS  212 (406)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            578999999996 8999999999999999999887754

>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=87.93  E-value=0.77  Score=40.85  Aligned_cols=27  Identities=26%  Similarity=0.240  Sum_probs=22.1

Q ss_pred             CEEEEEeCChHHHHHHHHHhhc---CCEEE
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAF---GCFIS  110 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~f---g~~V~  110 (204)
                      .+|||.|||+||+.+.+.+..-   ..+|.
T Consensus        61 ~kVaInGfGrIGR~vlr~l~~~~~~~~evv   90 (395)
T PLN03096         61 IKVAINGFGRIGRNFLRCWHGRKDSPLDVV   90 (395)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCCCeEEE
Confidence            5899999999999999998643   34666

>TIGR02415 23BDH acetoin reductases

Probab=87.91  E-value=0.66  Score=37.56  Aligned_cols=54  Identities=22%  Similarity=0.291  Sum_probs=39.3

Q ss_pred             CEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCC---------CC-----CCcceeCHHHHHHHHH
Q 045521           84 RSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPN---------TK-----YKGALVDESELVSALL  137 (204)
Q Consensus        84 ~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~---------~~-----~~G~lvd~~aL~~aL~  137 (204)
                      ||+.|.| .|.||+.+++.|..-|++|+.++|+....         ..     +.+.+-|++++.++++
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~   69 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAID   69 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH
Confidence            5788999 59999999999999999998887753210         00     1166677777766554

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=87.88  E-value=1  Score=38.11  Aligned_cols=34  Identities=24%  Similarity=0.378  Sum_probs=30.5

Q ss_pred             CCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           82 SGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        82 ~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      .|.+|.|.| .|.+|+.++++++.+|++|+...++
T Consensus       138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s  172 (325)
T TIGR02825       138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGS  172 (325)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCC
Confidence            589999999 5999999999999999999877654

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PRK07775 short chain dehydrogenase; Provisional

Probab=87.83  E-value=1.7  Score=36.02  Aligned_cols=36  Identities=25%  Similarity=0.227  Sum_probs=31.4

Q ss_pred             cCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           81 ISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        81 l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +.+|++.|.| .|.||+++++.|..-|++|+..+|+.
T Consensus         8 ~~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~   44 (274)
T PRK07775          8 PDRRPALVAGASSGIGAATAIELAAAGFPVALGARRV   44 (274)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            6678999999 59999999999999999998877643

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=87.81  E-value=1.1  Score=37.36  Aligned_cols=34  Identities=32%  Similarity=0.489  Sum_probs=30.8

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSRA  115 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r~  115 (204)
                      .|.+|.|.|.|.+|+.++++++.+|++ |++.++.
T Consensus       129 ~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~  163 (312)
T cd08269         129 AGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRR  163 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCC
Confidence            689999999999999999999999999 8777654

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	204
3ba1_A	333	Structure Of Hydroxyphenylpyruvate Reductase From C		3e-71
4dgs_A	340	The Crystals Structure Of Dehydrogenase From Rhizob		3e-30
4g2n_A	345	Crystal Structure Of Putative D-Isomer Specific 2-H		2e-23
2dbr_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		2e-22
2dbq_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		3e-22
2d0i_A	333	Crystal Structure Ph0520 Protein From Pyrococcus Ho		5e-20
2gcg_A	330	Ternary Crystal Structure Of Human Glyoxylate Reduc		3e-19
2h1s_A	328	Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE RE		6e-19
1gdh_A	320	Crystal Structure Of A Nad-Dependent D-Glycerate De		8e-19
2cuk_A	311	Crystal Structure Of Tt0316 Protein From Thermus Th		5e-18
2g76_A	335	Crystal Structure Of Human 3-Phosphoglycerate Dehyd		3e-15
1ygy_A	529	Crystal Structure Of D-3-Phosphoglycerate Dehydroge		3e-15
3ddn_A	528	Crystal Structure Of Hydroxypyruvic Acid Phosphate		3e-15
1wwk_A	307	Crystal Structure Of Phosphoglycerate Dehydrogenase		4e-14
3k5p_A	416	Crystal Structure Of Amino Acid-Binding Act: D-Isom		4e-14
4e5p_A	332	Thermostable Phosphite Dehydrogenase A176r Variant		6e-13
4e5m_A	329	Thermostable Phosphite Dehydrogenase E175aA176R IN		6e-13
3kb6_A	334	Crystal Structure Of D-lactate Dehydrogenase From A		6e-13
4e5k_A	329	Thermostable Phosphite Dehydrogenase In Complex Wit		2e-12
4e5n_A	330	Thermostable Phosphite Dehydrogenase In Complex Wit		2e-12
2ekl_A	313	Structure Of St1218 Protein From Sulfolobus Tokodai		6e-12
2w2k_A	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		7e-12
4ebf_A	334	Semet Thermostable Phosphite Dehydrogenase Glu175-A		9e-12
2w2l_D	348	Crystal Structure Of The Holo Forms Of Rhodotorula		1e-11
2w2k_B	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		3e-11
1sc6_A	404	Crystal Structure Of W139g D-3-Phosphoglycerate Deh		6e-09
1hku_A	358	CtbpBARS: A DUAL-Function Protein Involved In Trans		7e-09
1hku_A	358	CtbpBARS: A DUAL-Function Protein Involved In Trans		2e-04
1hl3_A	358	CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK		7e-09
1hl3_A	358	CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK		2e-04
1mx3_A	347	Crystal Structure Of Ctbp Dehydrogenase Core Holo F		8e-09
1mx3_A	347	Crystal Structure Of Ctbp Dehydrogenase Core Holo F		7e-04
2p9g_A	410	Crystal Structure Of Serine Bound G336v,G337v Doubl		9e-09
2p9c_A	410	Crystal Structure Of Serine Bound G336v Mutant Of E		9e-09
1psd_A	409	The Allosteric Ligand Site In The Vmax-Type Coopera		3e-08
2ome_A	336	Crystal Structure Of Human Ctbp2 Dehydrogenase Comp		3e-08
2ome_A	336	Crystal Structure Of Human Ctbp2 Dehydrogenase Comp		8e-04
1yba_A	410	The Active Form Of Phosphoglycerate Dehydrogenase L		4e-08
1dxy_A	333	Structure Of D-2-Hydroxyisocaproate Dehydrogenase L		5e-08
3ga0_A	358	Ctbp1BARS GLY172->glu Mutant Structure: Impairing N		7e-08
3ga0_A	358	Ctbp1BARS GLY172->glu Mutant Structure: Impairing N		2e-04
3evt_A	324	Crystal Structure Of Phosphoglycerate Dehydrogenase		4e-07
3gg9_A	352	Crystal Structure Of Putative D-3-Phosphoglycerate		6e-07
1j49_A	333	Insights Into Domain Closure, Substrate Specificity		7e-07
1j4a_A	333	Insights Into Domain Closure, Substrate Specificity		8e-07
2gsd_A	402	Nad-dependent Formate Dehydrogenase From Bacterium		1e-06
3fn4_A	401	Apo-form Of Nad-dependent Formate Dehydrogenase Fro		1e-06
3hg7_A	324	Crystal Structure Of D-Isomer Specific 2-Hydroxyaci		1e-06
2dld_A	337	D-Lactate Dehydrogenase Complexed With Nadh And Oxa		1e-06
2yq4_A	343	Crystal Structure Of D-isomer Specific 2-hydroxyaci		1e-05
2go1_A	401	Nad-Dependent Formate Dehydrogenase From Pseudomona		1e-04
2gug_A	401	Nad-dependent Formate Dehydrogenase From Pseudomona		2e-04
2nac_A	393	High Resolution Structures Of Holo And Apo Formate		2e-04
3n7u_A	351	Nad-Dependent Formate Dehydrogenase From Higher-Pla		2e-04
3naq_A	357	Apo-Form Of Nad-Dependent Formate Dehydrogenase Fro		2e-04
1xdw_A	331	Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase		7e-04

>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu Length = 333

Iteration: 1
 Score =  263 bits (673), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 149/258 (57%), Positives = 171/258 (66%), Gaps = 55/258 (21%)
Query: 2   GADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAV 61
           GADAELID+LPKLEIV++ S GLDK+DL+KC+EKG++VTNTPDVLTDDVAD AIGL LAV
Sbjct: 76  GADAELIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAV 135
Query: 62  LRR------FVRSEDGEMG-YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR 114
           LRR      +VR    + G +KLTTK SG+ VGIIGLGRIG+AVA+RAEAF C ISY SR
Sbjct: 136 LRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSR 195
Query: 115 AEKPNTKY------------------------------------------------KGAL 126
           ++KPNT Y                                                +G  
Sbjct: 196 SKKPNTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPH 255
Query: 127 VDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATADIV 186
           VDE ELVSAL+E RL  A LDVFE EP+VPE+LFGLENVVLLPH  SGT ETRK  AD+V
Sbjct: 256 VDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLV 315
Query: 187 IENLEACFLNKPLLTPVV 204
           + NLEA F  KPLLTPVV
Sbjct: 316 VGNLEAHFSGKPLLTPVV 333

>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium Meliloti Length = 340

Iteration: 1
 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 86/249 (34%), Positives = 111/249 (44%), Gaps = 56/249 (22%)
Query: 2   GADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAV 61
           G   E  + LP L I+A    G DK+DL + + + I VT TP VL DDVAD  I L LAV
Sbjct: 82  GLSNEWXEKLPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALXLAV 141
Query: 62  LR------RFVRSEDGEMGYKLTTKIS--GRSVGIIGLGRIGMAVAKRAEAFGCFISYRS 113
           LR      R VR      G +L    S  G+ +G++GLG+IG A+A RAEAFG  + Y +
Sbjct: 142 LRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGXSVRYWN 201
Query: 114 RAEKPNTKY------------------------------------------------KGA 125
           R+      +                                                +G 
Sbjct: 202 RSTLSGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGN 261
Query: 126 LVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATADI 185
           +VDE  L+ AL    +A A LDVF +EP +  E     N VL PH  S T ETR A   +
Sbjct: 262 VVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLXPHQGSATVETRXAXGKL 321
Query: 186 VIENLEACF 194
           V+ NL A F
Sbjct: 322 VLANLAAHF 330

>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. Js6 66 Length = 345

Iteration: 1
 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/250 (32%), Positives = 109/250 (43%), Gaps = 63/250 (25%)
Query: 5   AELIDSL-PKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
           AE+I  L P L+ +AT S G D ID    +  GI+V +TPDVL+D  A+ A  L L   R
Sbjct: 85  AEVIRKLQPGLKTIATLSVGYDHIDXAAARSLGIKVLHTPDVLSDACAEIAXLLVLNACR 144
Query: 64  ------RFVRSEDGEMGYK----LTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRS 113
                 R VRS     G+     L   ++GR +GI G GRIG A+A RA  FG  I Y +
Sbjct: 145 RGYEADRXVRSGSWP-GWGPTQLLGXGLTGRRLGIFGXGRIGRAIATRARGFGLAIHYHN 203
Query: 114 RAE-------------------------------KPNTK--------------------Y 122
           R                                 +P  K                     
Sbjct: 204 RTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINIS 263
Query: 123 KGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKAT 182
           +G L+++  L+ AL    L AA LDVF +EP +      L+N+ L PH  S T ETR A 
Sbjct: 264 RGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHETRDAX 323
Query: 183 ADIVIENLEA 192
             ++I+ +EA
Sbjct: 324 GWLLIQGIEA 333

>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1) Length = 334

Iteration: 1
 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/251 (37%), Positives = 122/251 (48%), Gaps = 64/251 (25%)
Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
           D E+ ++ PKL IVA  + G D ID+ +  ++GI VTNTPDVLTD  AD A  L LA  R
Sbjct: 58  DKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATAR 117
Query: 64  ------RFVRSEDGEM-------GYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFIS 110
                 RFVRS + +         + L   + G+++GIIGLGRIG A+AKRA+ F   I 
Sbjct: 118 HVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRIL 177
Query: 111 YRSRAEKP------NTKYK----------------------------------------- 123
           Y SR  K       N ++K                                         
Sbjct: 178 YYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILI 237
Query: 124 ----GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETR 179
               G +VD + LV AL E  +A A LDVFE EP   EELF L+NVVL PH  S +   R
Sbjct: 238 NIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGAR 297
Query: 180 KATADIVIENL 190
           +  A++V +NL
Sbjct: 298 EGMAELVAKNL 308

>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41) Length = 334

Iteration: 1
 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 94/251 (37%), Positives = 122/251 (48%), Gaps = 64/251 (25%)
Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
           D E+ ++ PKL IVA  + G D ID+ +  ++GI VTNTPDVLTD  AD A  L LA  R
Sbjct: 58  DKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATAR 117
Query: 64  ------RFVRSEDGEM-------GYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFIS 110
                 RFVRS + +         + L   + G+++GIIGLGRIG A+AKRA+ F   I 
Sbjct: 118 HVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNXRIL 177
Query: 111 YRSRAEKP------NTKYK----------------------------------------- 123
           Y SR  K       N ++K                                         
Sbjct: 178 YYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLXKKTAILI 237
Query: 124 ----GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETR 179
               G +VD + LV AL E  +A A LDVFE EP   EELF L+NVVL PH  S +   R
Sbjct: 238 NIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGAR 297
Query: 180 KATADIVIENL 190
           +  A++V +NL
Sbjct: 298 EGXAELVAKNL 308

>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii Ot3 Length = 333

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 110/248 (44%), Gaps = 63/248 (25%)
Query: 6   ELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR-- 63
           E++++  +L++++  SAG D IDL +  ++GI VT    +L++ VA+  +GL + ++R  
Sbjct: 57  EVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKI 116
Query: 64  ----RFVRSEDGE------MGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRS 113
               +F+R  + E       G+K    + G+ VGI+G+G IG A+A+R   FG  + Y S
Sbjct: 117 HYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWS 176
Query: 114 RAEKPNT---------------------------------------------KY-----K 123
           R  K N                                              KY     +
Sbjct: 177 RHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGKYLVNIGR 236
Query: 124 GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLE-NVVLLPHAASGTEETRKAT 182
           GALVDE  +  A+ + +L     DVFE EP    ELF  E   VL PH A    E ++  
Sbjct: 237 GALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQEDV 296
Query: 183 ADIVIENL 190
               +ENL
Sbjct: 297 GFRAVENL 304

>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate ReductaseHYDROXYPYRUVATE REDUCTASE Length = 330

Iteration: 1
 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 111/254 (43%), Gaps = 72/254 (28%)
Query: 13  KLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRS---- 68
            L++++T S G+D + L + K++GI+V  TPDVLTD  A+ A+ L L   RR   +    
Sbjct: 76  NLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEV 135
Query: 69  EDGEM---------GYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGC--FISYRSRAEK 117
           ++G           GY LT      +VGIIGLGRIG A+A+R + FG   F+ Y  R  +
Sbjct: 136 KNGGWTSWKPLWLCGYGLTQS----TVGIIGLGRIGQAIARRLKPFGVQRFL-YTGRQPR 190
Query: 118 P-------------------------------------NTKY--------------KGAL 126
           P                                     N  +              +G +
Sbjct: 191 PEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDV 250
Query: 127 VDESELVSALLEDRLAAAVLDVFEHEP-QVPEELFGLENVVLLPHAASGTEETRKATADI 185
           V++ +L  AL   ++AAA LDV   EP      L  L+N V+LPH  S T  TR   + +
Sbjct: 251 VNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLL 310
Query: 186 VIENLEACFLNKPL 199
              NL A    +P+
Sbjct: 311 AANNLLAGLRGEPM 324

>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO Sapiens Length = 328

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 110/253 (43%), Gaps = 72/253 (28%)
Query: 13  KLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRS---- 68
            L++++T S G+D + L + K++GI+V  TPDVLTD  A+ A+ L L   RR   +    
Sbjct: 74  NLKVISTXSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEV 133
Query: 69  EDGEM---------GYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGC--FISYRSRAEK 117
           ++G           GY LT      +VGIIGLGRIG A+A+R + FG   F+ Y  R  +
Sbjct: 134 KNGGWTSWKPLWLCGYGLTQS----TVGIIGLGRIGQAIARRLKPFGVQRFL-YTGRQPR 188
Query: 118 P-------------------------------------NTKY--------------KGAL 126
           P                                     N  +              +G +
Sbjct: 189 PEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKXKETAVFINISRGDV 248
Query: 127 VDESELVSALLEDRLAAAVLDVFEHEP-QVPEELFGLENVVLLPHAASGTEETRKATADI 185
           V++ +L  AL   ++AAA LDV   EP      L  L+N V+LPH  S T  TR   + +
Sbjct: 249 VNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTXSLL 308
Query: 186 VIENLEACFLNKP 198
              NL A    +P
Sbjct: 309 AANNLLAGLRGEP 321

>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate Dehydrogenase At 2.4 Angstroms Resolution Length = 320

Iteration: 1
 Score = 90.1 bits (222), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 76/252 (30%), Positives = 106/252 (42%), Gaps = 63/252 (25%)
Query: 6   ELIDSLPK-LEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR 64
           E+ID +P+ ++ ++T S G D IDL  CK +GI+V N P  +T   A+ A+ L L   RR
Sbjct: 59  EVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARR 118
Query: 65  F--------VRSEDGEMGYKLT-TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISY--RS 113
                     RS  G    +L   K+  +++GI G G IG A+AKRA+ F   I Y    
Sbjct: 119 AGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTH 178
Query: 114 RAEK-------------------------------PNTKY-------------------- 122
           RA                                 P T+Y                    
Sbjct: 179 RASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTA 238
Query: 123 KGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKAT 182
           +G LVD   +V+AL   RLA A  DVF  EP + E  + L N  L PH  S   + R+  
Sbjct: 239 RGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQAREDM 298
Query: 183 ADIVIENLEACF 194
           A    + ++A F
Sbjct: 299 AHQANDLIDALF 310

>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus Thermophilus Hb8 Length = 311

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 89/258 (34%), Positives = 120/258 (46%), Gaps = 59/258 (22%)
Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
           DAE++D    L+++A  S G+D +DL   +E+GI+VT+TP VLT+  AD  + L LAV R
Sbjct: 56  DAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVAR 115
Query: 64  RFVR----SEDG-----EMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR 114
           R V     + DG          L   + G ++G++G+GRIG AVAKRA AFG  + Y +R
Sbjct: 116 RVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHAR 175
Query: 115 AEKP-----------------------------------------------NTKYKGALV 127
             KP                                               NT  +GALV
Sbjct: 176 TPKPLPYPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTA-RGALV 234
Query: 128 DESELVSALLEDRLAAAVLDVFEHEPQVP-EELFGLENVVLLPHAASGTEETRKATADIV 186
           D   LV A L   L  A LDV + EP  P   L+ L N V+ PH  S    TR+  A++ 
Sbjct: 235 DTEALVEA-LRGHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVA 293
Query: 187 IENLEACFLNKPLLTPVV 204
           +ENL A    +    PVV
Sbjct: 294 VENLLAVLEGREPPNPVV 311

>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate Dehydrogenase Length = 335

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 103/232 (44%), Gaps = 57/232 (24%)
Query: 5   AELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR 64
           A++I++  KL++V     G+D +DL     KGI V NTP+  +   A+   G+ + + R+
Sbjct: 81  ADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQ 140
Query: 65  FVRS----EDGEMGYK--LTTKISGRSVGIIGLGRIGMAVAKRAE--------------- 103
             ++    +DG+   K  + T+++G+++GI+GLGRIG  VA R +               
Sbjct: 141 IPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISP 200
Query: 104 ----AFG------------C-FISYRSRAEKPNTKY-------------------KGALV 127
               +FG            C FI+  +      T                     +G +V
Sbjct: 201 EVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIV 260
Query: 128 DESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETR 179
           DE  L+ AL   + A A LDVF  EP     L   ENV+  PH  + T+E +
Sbjct: 261 DEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQ 312

>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase From Mycobacterium Tuberculosis Length = 529

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 105/240 (43%), Gaps = 58/240 (24%)
Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
           DAE++ + PKL+IVA    GLD +D+     +G+ V N P       A+ A+ L LA  R
Sbjct: 57  DAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASR 116
Query: 64  RFVRSEDG--EMGYKLT----TKISGRSVGIIGLGRIGMAVAKRAEAFGCFI----SYRS 113
           +   ++    E  +K +    T+I G++VG++GLGRIG  VA+R  AFG ++     Y S
Sbjct: 117 QIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVS 176
Query: 114 RAE-------------------------------------------KPN----TKYKGAL 126
            A                                            KP        +G L
Sbjct: 177 PARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGL 236
Query: 127 VDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETR-KATADI 185
           VDE+ L  A+    + AA LDVF  EP     LF L  VV+ PH  + T E + +A  D+
Sbjct: 237 VDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRAGTDV 296

>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound D-3- Phosphoglycerate Dehydrogenase In Mycobacterium Tuberculosis Length = 528

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 105/240 (43%), Gaps = 58/240 (24%)
Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
           DAE++ + PKL+IVA    GLD +D+     +G+ V N P       A+ A+ L LA  R
Sbjct: 56  DAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASR 115
Query: 64  RFVRSEDG--EMGYKLT----TKISGRSVGIIGLGRIGMAVAKRAEAFGCFI----SYRS 113
           +   ++    E  +K +    T+I G++VG++GLGRIG  VA+R  AFG ++     Y S
Sbjct: 116 QIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVS 175
Query: 114 RAE-------------------------------------------KPN----TKYKGAL 126
            A                                            KP        +G L
Sbjct: 176 PARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGL 235
Query: 127 VDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETR-KATADI 185
           VDE+ L  A+    + AA LDVF  EP     LF L  VV+ PH  + T E + +A  D+
Sbjct: 236 VDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRAGTDV 295

>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 307

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 109/233 (46%), Gaps = 60/233 (25%)
Query: 7   LIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFV 66
           +I+S PKL+++A    GLD ID+   KEKGI+V N P   +  VA+ A+GL  +V R+  
Sbjct: 60  VIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIA 119
Query: 67  ----RSEDGEMGYK--LTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFI------SYRSR 114
               +  +G    K  +  ++ G+++GIIG GRIG  VAK A A G  I          R
Sbjct: 120 FADRKMREGVWAKKEAMGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNEER 179
Query: 115 AEKPNTKY---------------------------------------------KGALVDE 129
           A++ N K+                                             +G +VD 
Sbjct: 180 AKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDT 239
Query: 130 SELVSALLEDRLAAAVLDVFEHEPQVPEE--LFGLENVVLLPHAASGTEETRK 180
           + LV AL E  +A A LDVFE EP +P++  L   +NVVL PH  + T E ++
Sbjct: 240 NALVKALKEGWIAGAGLDVFEEEP-LPKDHPLTKFDNVVLTPHIGASTVEAQE 291

>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain From Brucella Melitensis Length = 416

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 96/235 (40%), Gaps = 60/235 (25%)
Query: 6   ELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR- 64
           E+  +  +L  V   S G ++++L   +++GI V N P   T  VA+  IG  + ++RR 
Sbjct: 73  EIFAAANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRI 132
Query: 65  FVRSEDGEMGYKLTTKIS-----GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK-- 117
           F RS     G    T I      G+++GI+G G IG  V   AE+ G  + Y   ++K  
Sbjct: 133 FPRSVSAHAGGWEKTAIGSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQ 192
Query: 118 ------------------------PNTKY-----------------------KGALVDES 130
                                   P++K                        +G+ VD  
Sbjct: 193 YGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLE 252
Query: 131 ELVSALLEDRLAAAVLDVFEHEPQVPEELF-----GLENVVLLPHAASGTEETRK 180
            L   L E  LA A +DVF  EP    E F     GLENV+L PH    TEE ++
Sbjct: 253 ALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEEAQE 307

>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In Complex With Nad Length = 332

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 8/119 (6%)
Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
           DA+ + + P+L ++     G D  D+  C  +G+ +T  PD+LT   A+ AIGL + + R
Sbjct: 58  DADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 117
Query: 64  R------FVRSED--GEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR 114
                  FVRS    G       T +   +VG +G+G IG+A+A R + +G  + Y +R
Sbjct: 118 HLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHAR 176

>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX WITH NADP Length = 329

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 8/119 (6%)
Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
           DA+ + + P+L ++     G D  D+  C  +G+ +T  PD+LT   A+ AIGL + + R
Sbjct: 58  DADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 117
Query: 64  R------FVRSED--GEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR 114
                  FVRS    G       T +   +VG +G+G IG+A+A R + +G  + Y +R
Sbjct: 118 HLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHAR 176

>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex Aeolicus Complexed With Nad And Lactic Acid Length = 334

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 75/143 (52%), Gaps = 14/143 (9%)
Query: 6   ELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRF 65
           EL+   P+L+++ T S G D IDL  CK+KGI VT+ P    + VA+      L +++R 
Sbjct: 57  ELLSKXPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAXILTLVKRL 116
Query: 66  VRSED--GEMGYKLTTKISGR-----SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKP 118
            R ED   ++ +   ++I  R     ++G+IG GRIG  VA    AFG  +      ++ 
Sbjct: 117 KRIEDRVKKLNFSQDSEILARELNRLTLGVIGTGRIGSRVAXYGLAFGXKVLCYDVVKRE 176
Query: 119 NTKYKGA-------LVDESELVS 134
           + K KG        L+ ES+++S
Sbjct: 177 DLKEKGCVYTSLDELLKESDVIS 199

>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad And Sulfite Length = 329

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 94/244 (38%), Gaps = 68/244 (27%)
Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
           DA+ + + P+L ++     G D  D+  C  +G+ +T  PD+LT   A+ AIGL + + R
Sbjct: 58  DADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 117
Query: 64  R------FVRSED--GEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYR-SR 114
                  FVRS    G       T +   +VG +G+G IG+A+A R + +G  + Y  ++
Sbjct: 118 HLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAK 177
Query: 115 AEKPNTKYK--------------------------------------------------- 123
           A    T+ +                                                   
Sbjct: 178 ALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCR 237
Query: 124 GALVDESELVSALLEDRLAAAVLDVFEHE--------PQVPEELFGLENVVLLPHAASGT 175
           G++VDE+ +++AL   +L     DVFE E         Q+   L    N +  PH  S  
Sbjct: 238 GSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAV 297
Query: 176 EETR 179
              R
Sbjct: 298 RAVR 301

>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad Length = 330

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 94/244 (38%), Gaps = 68/244 (27%)
Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
           DA+ + + P+L ++     G D  D+  C  +G+ +T  PD+LT   A+ AIGL + + R
Sbjct: 58  DADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 117
Query: 64  R------FVRSED--GEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYR-SR 114
                  FVRS    G       T +   +VG +G+G IG+A+A R + +G  + Y  ++
Sbjct: 118 HLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAK 177
Query: 115 AEKPNTKYK--------------------------------------------------- 123
           A    T+ +                                                   
Sbjct: 178 ALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCR 237
Query: 124 GALVDESELVSALLEDRLAAAVLDVFEHE--------PQVPEELFGLENVVLLPHAASGT 175
           G++VDE+ +++AL   +L     DVFE E         Q+   L    N +  PH  S  
Sbjct: 238 GSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAV 297
Query: 176 EETR 179
              R
Sbjct: 298 RAVR 301

>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii Length = 313

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 103/243 (42%), Gaps = 58/243 (23%)
Query: 6   ELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRF 65
           ++I+   KL+I+A    GLD ID  + +++ I+V   P   TD   +  IGL +A  R+ 
Sbjct: 61  DVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKM 120
Query: 66  VRS----EDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGC------FISYRSRA 115
             S    + G        +++G+++GI+G GRIG  V   A A G        +  R +A
Sbjct: 121 YTSMALAKSGIFKKIEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREKA 180
Query: 116 EKPNTKYKG--ALVDESELVS------------------ALLED---------------- 139
           EK N K      L+  S+++S                   L++D                
Sbjct: 181 EKINAKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGK 240
Query: 140 ---------RLAAAVLDVFEHEPQVPE---ELFGLENVVLLPHAASGTEETRKATADIVI 187
                    ++ A   DVF +EP   E   EL   E V++  H  + T+E +K  A++  
Sbjct: 241 ALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKRVAEMTT 300
Query: 188 ENL 190
           +NL
Sbjct: 301 QNL 303

>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a. Length = 348

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 109/268 (40%), Gaps = 69/268 (25%)
Query: 4   DAELIDSLPK-LEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVL 62
           +A+LI  LP  L++ A   AG D +DL    E+G+   N+        +D A+ L L+V 
Sbjct: 70  NADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVF 129
Query: 63  R------RFVRSEDGEMGYKLTTKIS-------GRSVGIIGLGRIGMAVAKRA-EAFGCF 108
           R      R  R+ D E   ++  +I        G  +G +GLG I   +A++A    G  
Sbjct: 130 RLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMK 189
Query: 109 ISY---------------------------RS----------------------RAEKPN 119
           + Y                           RS                       A KP 
Sbjct: 190 LVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPG 249
Query: 120 TKY----KGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGT 175
           ++     +G ++ +  L++AL   +L +A LDV E EPQV +EL  +++V L  H     
Sbjct: 250 SRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGVA 309
Query: 176 EETRKATADIVIENLEACFLN-KPLLTP 202
            ET      + + N++   L  KPLLTP
Sbjct: 310 IETFHEFERLTMTNIDRFLLQGKPLLTP 337

>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala Mutant Length = 334

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 8/118 (6%)
Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
           DA+ + + P+L ++     G D  D+  C  +G+ +T  PD+LT   A+ AIGL + + R
Sbjct: 59  DADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 118
Query: 64  R------FVRSED--GEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRS 113
                  FVRS    G       T +   +VG +G G IG+A A R + +G  + Y +
Sbjct: 119 HLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGXGAIGLAXADRLQGWGATLQYHA 176

>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 2.5a Length = 348

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 109/268 (40%), Gaps = 69/268 (25%)
Query: 4   DAELIDSLPK-LEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVL 62
           +A++I  LP  L++ A   AG D +DL    E+G+   N+        +D A+ L L+V 
Sbjct: 70  NADIISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVF 129
Query: 63  R------RFVRSEDGEMGYKLTTKIS-------GRSVGIIGLGRIGMAVAKRA-EAFGCF 108
           R      R  R+ D E   ++  +I        G  +G +GLG I   +A++A    G  
Sbjct: 130 RLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMK 189
Query: 109 ISY---------------------------RS----------------------RAEKPN 119
           + Y                           RS                       A KP 
Sbjct: 190 LVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPG 249
Query: 120 TKY----KGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGT 175
           ++     +G ++ +  L++AL   +L +A LDV E EPQV +EL  +++V L  H     
Sbjct: 250 SRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGVA 309
Query: 176 EETRKATADIVIENLEACFLN-KPLLTP 202
            ET      + + N++   L  KPLLTP
Sbjct: 310 IETFHEFERLTMTNIDRFLLQGKPLLTP 337

>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a Length = 348

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 108/268 (40%), Gaps = 69/268 (25%)
Query: 4   DAELIDSLPK-LEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVL 62
           +A+LI  LP  L++ A   AG D +DL    E+G+   N+        +D A+ L L+V 
Sbjct: 70  NADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVF 129
Query: 63  R------RFVRSEDGEMGYKLTTKIS-------GRSVGIIGLGRIGMAVAKRA-EAFGCF 108
           R      R  R+ D E   ++  +I        G  +G +GLG I   +A++A    G  
Sbjct: 130 RLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMK 189
Query: 109 ISY---------------------------RS----------------------RAEKPN 119
           + Y                           RS                       A KP 
Sbjct: 190 LVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPG 249
Query: 120 TKY----KGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGT 175
           ++     +G ++ +  L++AL   +L +A LDV E EP V +EL  +++V L  H     
Sbjct: 250 SRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPNVSKELIEMKHVTLTTHIGGVA 309
Query: 176 EETRKATADIVIENLEACFLN-KPLLTP 202
            ET      + + N++   L  KPLLTP
Sbjct: 310 IETFHEFERLTMTNIDRFLLQGKPLLTP 337

>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate Dehydrogenase Complexed With Nad+ Length = 404

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 95/236 (40%), Gaps = 62/236 (26%)
Query: 6   ELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRF 65
           ++I++  KL  +   + G +++DL    ++GI V N P   T  VA+  IG  L +LR  
Sbjct: 62  DVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGV 121
Query: 66  ----VRSEDGEMGYKL---TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYR------ 112
                ++  G +G KL   + +  G+ +GIIG G IG  +   AE+ G ++ +       
Sbjct: 122 PEANAKAHRG-VGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGXYVYFYDIENKL 180
Query: 113 -----------------------SRAEKPNTKY--------------------KGALVDE 129
                                     E P+TK                     +G +VD 
Sbjct: 181 PLGNATQVQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDI 240
Query: 130 SELVSALLEDRLAAAVLDVFEHEPQVPEELFG-----LENVVLLPHAASGTEETRK 180
             L  AL    LA A +DVF  EP    + F       +NV+L PH    T+E ++
Sbjct: 241 PALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQE 296

>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In Transcription Corepression And Golgi Membrane Fission Length = 358

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 13/114 (11%)
Query: 6   ELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRF 65
           E ++    L I+    +G D ID+    + GI V N P    ++ AD+ +   L + RR 
Sbjct: 81  EDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRT 140
Query: 66  V----------RSEDGEMGYKLTT---KISGRSVGIIGLGRIGMAVAKRAEAFG 106
                      R +  E   ++ +   +I G ++GIIGLGR+G AVA RA+AFG
Sbjct: 141 TWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFG 194

>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In Transcription Corepression And Golgi Membrane Fission Length = 358

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 46/95 (48%), Gaps = 19/95 (20%)
Query: 123 KGALVDESELVSALLEDRLAAAVLDVFEHEP----QVPEELFGLENVVLLPHAASGTE-- 176
           +G LVDE  L  AL E R+  A LDV E EP    Q P  L    N++  PHAA  +E  
Sbjct: 263 RGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGP--LKDAPNLICTPHAAWYSEQA 320
Query: 177 ----------ETRKATADIVIENLEACFLNKPLLT 201
                     E R+A    + ++L+ C +NK  LT
Sbjct: 321 SIEMREEAAREIRRAITGRIPDSLKNC-VNKDHLT 354

>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK PEPTIDE Length = 358

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 13/114 (11%)
Query: 6   ELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRF 65
           E ++    L I+    +G D ID+    + GI V N P    ++ AD+ +   L + RR 
Sbjct: 81  EDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRT 140
Query: 66  V----------RSEDGEMGYKLTT---KISGRSVGIIGLGRIGMAVAKRAEAFG 106
                      R +  E   ++ +   +I G ++GIIGLGR+G AVA RA+AFG
Sbjct: 141 TWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFG 194

>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK PEPTIDE Length = 358

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 46/95 (48%), Gaps = 19/95 (20%)
Query: 123 KGALVDESELVSALLEDRLAAAVLDVFEHEP----QVPEELFGLENVVLLPHAASGTE-- 176
           +G LVDE  L  AL E R+  A LDV E EP    Q P  L    N++  PHAA  +E  
Sbjct: 263 RGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGP--LKDAPNLICTPHAAWYSEQA 320
Query: 177 ----------ETRKATADIVIENLEACFLNKPLLT 201
                     E R+A    + ++L+ C +NK  LT
Sbjct: 321 SIEMREEAAREIRRAITGRIPDSLKNC-VNKDHLT 354

>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form Length = 347

Iteration: 1
 Score = 57.0 bits (136), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 13/114 (11%)
Query: 6   ELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRF 65
           E ++    L I+    +G D ID+    + GI V N P    ++ AD+ +   L + RR 
Sbjct: 78  EDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRA 137
Query: 66  V----------RSEDGEMGYKLTT---KISGRSVGIIGLGRIGMAVAKRAEAFG 106
                      R +  E   ++ +   +I G ++GIIGLGR+G AVA RA+AFG
Sbjct: 138 TWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFG 191

>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form Length = 347

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 123 KGALVDESELVSALLEDRLAAAVLDVFEHEP----QVPEELFGLENVVLLPHAASGTEE 177
           +G LVDE  L  AL E R+  A LDV E EP    Q P  L    N++  PHAA  +E+
Sbjct: 260 RGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGP--LKDAPNLICTPHAAWYSEQ 316

>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 56.6 bits (135), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 93/236 (39%), Gaps = 62/236 (26%)
Query: 6   ELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRF 65
           ++I++  KL  +   + G +++DL    ++GI V N P   T  VA+  IG  L +L R 
Sbjct: 68  DVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIG-ELLLLLRG 126
Query: 66  VRSEDGEMGYKLTTKIS-------GRSVGIIGLGRIGMAVAKRAEAFGCFISYR------ 112
           V   + +    +  K++       G+ +GIIG G IG  +   AE+ G ++ +       
Sbjct: 127 VPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKL 186
Query: 113 -----------------------SRAEKPNTK--------------------YKGALVDE 129
                                     E P+TK                     +G +VD 
Sbjct: 187 PLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDI 246
Query: 130 SELVSALLEDRLAAAVLDVFEHEPQVPEELFG-----LENVVLLPHAASGTEETRK 180
             L  AL    LA A +DVF  EP    + F       +NV+L PH    T+E ++
Sbjct: 247 PALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQE 302

>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 56.6 bits (135), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 93/236 (39%), Gaps = 62/236 (26%)
Query: 6   ELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRF 65
           ++I++  KL  +   + G +++DL    ++GI V N P   T  VA+  IG  L +L R 
Sbjct: 68  DVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIG-ELLLLLRG 126
Query: 66  VRSEDGEMGYKLTTKIS-------GRSVGIIGLGRIGMAVAKRAEAFGCFISYR------ 112
           V   + +    +  K++       G+ +GIIG G IG  +   AE+ G ++ +       
Sbjct: 127 VPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKL 186
Query: 113 -----------------------SRAEKPNTK--------------------YKGALVDE 129
                                     E P+TK                     +G +VD 
Sbjct: 187 PLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDI 246
Query: 130 SELVSALLEDRLAAAVLDVFEHEPQVPEELFG-----LENVVLLPHAASGTEETRK 180
             L  AL    LA A +DVF  EP    + F       +NV+L PH    T+E ++
Sbjct: 247 PALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQE 302

>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative Enzyme Phosphoglycerate Dehydrogenase Length = 409

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 92/236 (38%), Gaps = 62/236 (26%)
Query: 6   ELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRF 65
           ++I++  KL  +     G +++DL    ++GI V N P   T  VA+  IG  L +L R 
Sbjct: 67  DVINAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIG-ELLLLLRG 125
Query: 66  VRSEDGEMGYKLTTKIS-------GRSVGIIGLGRIGMAVAKRAEAFGCFISYR------ 112
           V   + +    +  K++       G+ +GIIG G IG  +   AE+ G ++ +       
Sbjct: 126 VPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKL 185
Query: 113 -----------------------SRAEKPNTKY--------------------KGALVDE 129
                                     E P+TK                     +G +VD 
Sbjct: 186 PLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDI 245
Query: 130 SELVSALLEDRLAAAVLDVFEHEPQVPEELFG-----LENVVLLPHAASGTEETRK 180
             L  AL    LA A +DVF  EP    + F       +NV+L PH    T+E ++
Sbjct: 246 PALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQE 301

>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed With Nad(H) Length = 336

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 13/114 (11%)
Query: 6   ELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRF 65
           E ++    L ++    +G D +D+    E GI V N P    ++ AD+ I   L + RR 
Sbjct: 62  EDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTICHILNLYRRN 121
Query: 66  V----------RSEDGEMGYKLTT---KISGRSVGIIGLGRIGMAVAKRAEAFG 106
                      R +  E   ++ +   +I G ++G+IG GR G AVA RA+AFG
Sbjct: 122 TWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFG 175

>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed With Nad(H) Length = 336

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 42/94 (44%), Gaps = 19/94 (20%)
Query: 123 KGALVDESELVSALLEDRLAAAVLDVFEHEP----QVPEELFGLENVVLLPHAASGTE-- 176
           +G LVDE  L  AL E R+  A LDV E EP    Q P  L    N++  PH A  +E  
Sbjct: 244 RGGLVDEKALAQALKEGRIRGAALDVHESEPFSFAQGP--LKDAPNLICTPHTAWYSEQA 301
Query: 177 ----------ETRKATADIVIENLEACFLNKPLL 200
                     E R+A    + E+L  C +NK   
Sbjct: 302 SLEMREAAATEIRRAITGRIPESLRNC-VNKEFF 334

>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 92/236 (38%), Gaps = 62/236 (26%)
Query: 6   ELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRF 65
           ++I++  KL  +     G +++DL    ++GI V N P   T  VA+  IG  L +L R 
Sbjct: 68  DVINAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIG-ELLLLLRG 126
Query: 66  VRSEDGEMGYKLTTKIS-------GRSVGIIGLGRIGMAVAKRAEAFGCFISYR------ 112
           V   + +    +  K++       G+ +GIIG G IG  +   AE+ G ++ +       
Sbjct: 127 VPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGXYVYFYDIENKL 186
Query: 113 -----------------------SRAEKPNTKY--------------------KGALVDE 129
                                     E P+TK                     +G +VD 
Sbjct: 187 PLGNATQVQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDI 246
Query: 130 SELVSALLEDRLAAAVLDVFEHEPQVPEELFG-----LENVVLLPHAASGTEETRK 180
             L  AL    LA A +DVF  EP    + F       +NV+L PH    T+E ++
Sbjct: 247 PALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQE 302

>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase Length = 333

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 101/256 (39%), Gaps = 75/256 (29%)
Query: 14  LEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRF------VR 67
           ++ +   + G D ID+   K+ GI+++N P      +A+ A+  TL +LR        ++
Sbjct: 69  IKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQ 128
Query: 68  SEDGE-MGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFG----CFISYRSRAEKPNTKY 122
           + D E  G  +  ++  ++VG++G G IG    K  + FG     +  Y  + + P+  Y
Sbjct: 129 AGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDY 188
Query: 123 ---------------------------------------------KGALVDESELVSALL 137
                                                        +  L+D   ++S L 
Sbjct: 189 VSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLK 248
Query: 138 EDRLAAAVLDVFEHEPQ--------------VPEELFGLENVVLLPHAASGTEETRKATA 183
             +LA   +D +E+E +              + +EL G+ NVVL PH A  TE    A  
Sbjct: 249 SGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTE---TAVH 305
Query: 184 DIVIENLEAC--FLNK 197
           ++V  +L+    FL K
Sbjct: 306 NMVYFSLQHLVDFLTK 321

>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H) Binding And Dimerization Length = 358

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 13/114 (11%)
Query: 6   ELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRF 65
           E ++    L I+    +G D ID+    + GI V N P    ++ AD+ +   L + RR 
Sbjct: 81  EDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRT 140
Query: 66  V----------RSEDGEMGYKLTT---KISGRSVGIIGLGRIGMAVAKRAEAFG 106
                      R +  E   ++ +   +I G ++GIIGL R+G AVA RA+AFG
Sbjct: 141 TWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLERVGQAVALRAKAFG 194

>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H) Binding And Dimerization Length = 358

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 46/95 (48%), Gaps = 19/95 (20%)
Query: 123 KGALVDESELVSALLEDRLAAAVLDVFEHEP----QVPEELFGLENVVLLPHAASGTE-- 176
           +G LVDE  L  AL E R+  A LDV E EP    Q P  L    N++  PHAA  +E  
Sbjct: 263 RGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGP--LKDAPNLICTPHAAWYSEQA 320
Query: 177 ----------ETRKATADIVIENLEACFLNKPLLT 201
                     E R+A    + ++L+ C +NK  LT
Sbjct: 321 SIEMREEAAREIRRAITGRIPDSLKNC-VNKDHLT 354

>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Lactobacillus Plantarum Length = 324

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/237 (21%), Positives = 95/237 (40%), Gaps = 60/237 (25%)
Query: 13  KLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRSEDGE 72
           +L+ V   SAG+D + L   +  G+ V NT  +  D ++++ +   L+V+R +  +   +
Sbjct: 61  QLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQ 120
Query: 73  MGYK------LTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKP-------- 118
            G +       T+ ++G+ + I G G+IG ++A +A A G  +   +    P        
Sbjct: 121 RGARQWALPMTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHETV 180
Query: 119 -----------------------------------NTKYKGALV--------DESELVSA 135
                                               TK +  L+        D + L++A
Sbjct: 181 AFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTA 240
Query: 136 LLEDRLAAAVLDVFEHEPQVPEE--LFGLENVVLLPHAASGTEETRKATADIVIENL 190
           L   +L+ A LDV E EP +P +  L+  ++V++ PH +      R     I   N 
Sbjct: 241 LDHHQLSMAALDVTEPEP-LPTDHPLWQRDDVLITPHISGQIAHFRATVFPIFAANF 296

>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate Dehydrogenase Oxidoreductase From Ralstonia Solanacearum Length = 352

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 101/259 (38%), Gaps = 76/259 (29%)
Query: 6   ELIDSLPKLEIVATCS-----AGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLA 60
           +L+D LPKL+I++        AG   IDL  C +KG+ V           A+    L +A
Sbjct: 64  QLLDRLPKLKIISQTGRVSRDAG-GHIDLEACTDKGVVVLEGKGSPVAP-AELTWALVMA 121
Query: 61  VLRR---FVRS-EDG---EMGYKLTTK---------ISGRSVGIIGLGRIGMAVAKRAEA 104
             RR   +V S + G   + G K TT          + G+++GI G G+IG  VA    A
Sbjct: 122 AQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRA 181
Query: 105 FGCFI--------SYRSRAE---------------------------------------- 116
           FG  +          R+RA+                                        
Sbjct: 182 FGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRM 241
Query: 117 KPNTKY----KGALVDESELVSALLEDRLAAAVLDVFEHEPQVP-EELFGLENVVLLPHA 171
           KP   +    +  LV+E+ +V+AL   R   A +DVFE EP +    L  +EN +  PH 
Sbjct: 242 KPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHI 301
Query: 172 ASGTEETRKATADIVIENL 190
                E+ +    I  +N+
Sbjct: 302 GYVERESYEMYFGIAFQNI 320

>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 71/177 (40%), Gaps = 27/177 (15%)
Query: 21  SAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEMG 74
           + G+D ID+ K KE G Q+TN P    + +A+ A      +LR+       V   D    
Sbjct: 78  NVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWA 137
Query: 75  YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVS 134
             +  ++  + VG++G G IG    +  E FG  +        P  + KG  VD      
Sbjct: 138 PTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDS----- 192
Query: 135 ALLEDRLAAAVLDVFE-HEPQVPEELFGLENVVLLPHAASGTEETRKATADIVIENL 190
             L+D    A  DV   H P VP  +  + +           E   K   D+VI N+
Sbjct: 193 --LDDLYKQA--DVISLHVPDVPANVHMIND-----------ESIAKMKQDVVIVNV 234

>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 71/177 (40%), Gaps = 27/177 (15%)
Query: 21  SAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEMG 74
           + G+D ID+ K KE G Q+TN P    + +A+ A      +LR+       V   D    
Sbjct: 78  NVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWA 137
Query: 75  YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVS 134
             +  ++  + VG++G G IG    +  E FG  +        P  + KG  VD      
Sbjct: 138 PTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDS----- 192
Query: 135 ALLEDRLAAAVLDVFE-HEPQVPEELFGLENVVLLPHAASGTEETRKATADIVIENL 190
             L+D    A  DV   H P VP  +  + +           E   K   D+VI N+
Sbjct: 193 --LDDLYKQA--DVISLHVPDVPANVHMIND-----------ESIAKMKQDVVIVNV 234

>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c2 In Complex With Nad And Azide Length = 402

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 8/122 (6%)
Query: 5   AELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR 64
           AE I   PKL++  T   G D +DL    +  I V       ++ VA+  + + L ++R 
Sbjct: 106 AERIAKAPKLKLALTAGIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRN 165
Query: 65  FVRSEDG--EMGYKL------TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116
           ++ S D     G+ +      +  + G  VG +  GRIG+ V +    F   + Y  R  
Sbjct: 166 YIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHYTDRHR 225
Query: 117 KP 118
            P
Sbjct: 226 LP 227

>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c-1 In Closed Conformation Length = 401

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 8/122 (6%)
Query: 5   AELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR 64
           AE I   PKL++  T   G D +DL    +  I V       ++ VA+  + + L ++R 
Sbjct: 105 AERIAKAPKLKLALTAGIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRN 164
Query: 65  FVRSEDG--EMGYKL------TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116
           ++ S D     G+ +      +  + G  VG +  GRIG+ V +    F   + Y  R  
Sbjct: 165 YIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHYTDRHR 224
Query: 117 KP 118
            P
Sbjct: 225 LP 226

>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid Dehydrogenase Family Protein From Aeromonas Salmonicida Subsp. Salmonicida A449 Length = 324

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/218 (21%), Positives = 90/218 (41%), Gaps = 59/218 (27%)
Query: 13  KLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRF--VRSED 70
           KL    +  AG+D +   +C+ +  Q+TN   +    +++   G  L+++R+    R + 
Sbjct: 67  KLSWFQSTYAGVDVLLDARCR-RDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQ 125
Query: 71  GEMGYKLT--TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKY------ 122
            +  ++      + GR++ I+G G IG  +A   + FG  +   SR+ +    +      
Sbjct: 126 KQRLWQSHPYQGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFDQVYQL 185
Query: 123 ---------------------------------------------KGALVDESELVSALL 137
                                                        +G  ++E +L++AL 
Sbjct: 186 PALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALR 245
Query: 138 EDRLAAAVLDVFEHEPQVPEE--LFGLENVVLLPHAAS 173
             +L  AVLDVFE EP +P +  L+G  N+++ PH ++
Sbjct: 246 TGKLGMAVLDVFEQEP-LPADSPLWGQPNLIITPHNSA 282

>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate Length = 337

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 62/143 (43%), Gaps = 16/143 (11%)
Query: 21  SAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRSE------DGEMG 74
           + G+D ID+ K KE G Q+TN P    + +A+ A      VLR+  R +      D    
Sbjct: 78  NVGVDNIDMDKAKELGFQITNVPVYSPNAIAEHAAIQAARVLRQDKRMDEKMAKRDLRWA 137
Query: 75  YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVS 134
             +  ++  + VG++G G IG    +  E FG  +      + P  + KG  VD      
Sbjct: 138 PTIGREVRDQVVGVVGTGHIGQVFMRIMEGFGAKVIAYDIFKNPELEKKGYYVDS----- 192
Query: 135 ALLEDRLAAAVLDVFE-HEPQVP 156
             L+D    A  DV   H P VP
Sbjct: 193 --LDDLYKQA--DVISLHVPDVP 211

>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid Dehydrogenase From Lactobacillus Delbrueckii Ssp. Bulgaricus Length = 343

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 91/236 (38%), Gaps = 71/236 (30%)
Query: 23  GLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR-----RFVRSEDGEMGYK- 76
           G + I+    K+  + VTN P      +A+  +   + +LR     R+    D +  +  
Sbjct: 80  GFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWPS 139
Query: 77  --LTTKISGRSVGIIGLGRIGMAVAKRAEAFGC---------------FISY-------- 111
             ++ +I   +VG+IG+G IG AVA+   A G                F++Y        
Sbjct: 140 NLISNEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPEFEPFLTYTDFDTVLK 199
Query: 112 ---------------------RSRAEKPNTKY-----KGALVDESELVSALLEDRLAAAV 145
                                +   E   + Y     +G LVD   L+ AL +  +A A 
Sbjct: 200 EADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAG 259
Query: 146 LDV-------FEH----EPQVPEE---LFGLENVVLLPHAASGTEETRKATADIVI 187
           LD        F H    + ++PE+   L  + NVV+ PH+A  TE + +    I +
Sbjct: 260 LDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVITPHSAFYTETSIRNMVQICL 315

>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas Sp.101 Length = 401

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 8/123 (6%)
Query: 6   ELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRF 65
           E I     L++  T   G D +DL    ++ + V       +  VA+  + + L+++R +
Sbjct: 107 ERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNY 166
Query: 66  VRSEDG--EMGYKLTTKIS------GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK 117
           + S +   + G+ +   +S         VG +  GRIG+AV +R   F   + Y  R   
Sbjct: 167 LPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRL 226
Query: 118 PNT 120
           P +
Sbjct: 227 PES 229

>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas Sp.101 In Complex With Formate Length = 401

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 8/123 (6%)
Query: 6   ELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRF 65
           E I     L++  T   G D +DL    ++ + V       +  VA+  + + L+++R +
Sbjct: 107 ERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNY 166
Query: 66  VRSEDG--EMGYKLTTKIS------GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK 117
           + S +   + G+ +   +S         VG +  GRIG+AV +R   F   + Y  R   
Sbjct: 167 LPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRL 226
Query: 118 PNT 120
           P +
Sbjct: 227 PES 229

>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate Dehydrogenase Length = 393

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 8/123 (6%)
Query: 6   ELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRF 65
           E I     L++  T   G D +DL    ++ + V       +  VA+  + + L+++R +
Sbjct: 106 ERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNY 165
Query: 66  VRSEDG--EMGYKLTTKIS------GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK 117
           + S +   + G+ +   +S         VG +  GRIG+AV +R   F   + Y  R   
Sbjct: 166 LPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRL 225
Query: 118 PNT 120
           P +
Sbjct: 226 PES 228

>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid Thaliana In Complex With Nad And Azide Length = 351

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 10/121 (8%)
Query: 5   AELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR 64
           AE I     L+++ T   G D IDL      G+ V          VA+  +   L ++R 
Sbjct: 78  AERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRN 137
Query: 65  FVRSED----GE-----MGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA 115
           FV   +    GE     + Y+    + G+++G +G GRIG  + +R + FGC + Y  R 
Sbjct: 138 FVPGYNQVVKGEWNVAGIAYR-AYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRL 196
Query: 116 E 116
           +
Sbjct: 197 Q 197

>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabidopsis Thaliana Length = 357

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 10/121 (8%)
Query: 5   AELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR 64
           AE I     L+++ T   G D IDL      G+ V          VA+  +   L ++R 
Sbjct: 84  AERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRN 143
Query: 65  FVRSED----GE-----MGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA 115
           FV   +    GE     + Y+    + G+++G +G GRIG  + +R + FGC + Y  R 
Sbjct: 144 FVPGYNQVVKGEWNVAGIAYR-AYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRL 202
Query: 116 E 116
           +
Sbjct: 203 Q 203

>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From Acidaminococcus Fermentans Length = 331

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 9/113 (7%)
Query: 3   ADAELIDSLPKLEI--VATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLA 60
           A+ + +D   KL +  + T +AG D ID    KE G  +   P    + +A+ A+   + 
Sbjct: 57  ANKQNLDIYKKLGVKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMM 116
Query: 61  VLRR--FVRSEDGEMGYK-----LTTKISGRSVGIIGLGRIGMAVAKRAEAFG 106
           +LR   +  S   +  +K      + ++   +VG++GLGRIG   A+     G
Sbjct: 117 LLRHTAYTTSRTAKKNFKVDAFMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMG 169

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	204
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	5e-90
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	2e-89
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	1e-74
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	3e-71
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	1e-69
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	4e-68
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	7e-67
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	8e-65
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	6e-62
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	7e-60
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	1e-55
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	6e-52
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	1e-50
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	4e-47
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	7e-47
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	2e-45
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	9e-44
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	3e-42
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	7e-40
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	9e-39
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	1e-38
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	2e-38
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	3e-38
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	9e-38
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	1e-37
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	2e-36
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	1e-32
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	3e-30
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	5e-28
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	2e-27
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	2e-25
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	2e-25
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	1e-05

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333

 Score =  266 bits (682), Expect = 5e-90
 Identities = 147/258 (56%), Positives = 167/258 (64%), Gaps = 55/258 (21%)

Query: 2   GADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAV 61
           GADAELID+LPKLEIV++ S GLDK+DL+KC+EKG++VTNTPDVLTDDVAD AIGL LAV
Sbjct: 76  GADAELIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAV 135

Query: 62  LRRFVRSE----DGE---MGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR 114
           LRR    +     G      +KLTTK SG+ VGIIGLGRIG+AVA+RAEAF C ISY SR
Sbjct: 136 LRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSR 195

Query: 115 AEKPNTKYK------------------------------------------------GAL 126
           ++KPNT Y                                                 G  
Sbjct: 196 SKKPNTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPH 255

Query: 127 VDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATADIV 186
           VDE ELVSAL+E RL  A LDVFE EP+VPE+LFGLENVVLLPH  SGT ETRK  AD+V
Sbjct: 256 VDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLV 315

Query: 187 IENLEACFLNKPLLTPVV 204
           + NLEA F  KPLLTPVV
Sbjct: 316 VGNLEAHFSGKPLLTPVV 333

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340

 Score =  265 bits (679), Expect = 2e-89
 Identities = 83/258 (32%), Positives = 110/258 (42%), Gaps = 56/258 (21%)

Query: 2   GADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAV 61
           G   E ++ LP L I+A    G DK+DL + + + I VT TP VL DDVAD  I L LAV
Sbjct: 82  GLSNEWMEKLPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAV 141

Query: 62  LRRFVRSE--------DGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRS 113
           LRR    +               L     G+ +G++GLG+IG A+A RAEAFG  + Y +
Sbjct: 142 LRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWN 201

Query: 114 RAEKPNTKYK------------------------------------------------GA 125
           R+      +                                                 G 
Sbjct: 202 RSTLSGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGN 261

Query: 126 LVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATADI 185
           +VDE  L+ AL    +A A LDVF +EP +  E     N VL+PH  S T ETR A   +
Sbjct: 262 VVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLMPHQGSATVETRMAMGKL 321

Query: 186 VIENLEACFLNKPLLTPV 203
           V+ NL A F  +     V
Sbjct: 322 VLANLAAHFAGEKAPNTV 339

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345

 Score =  227 bits (582), Expect = 1e-74
 Identities = 79/261 (30%), Positives = 111/261 (42%), Gaps = 61/261 (23%)

Query: 4   DAELIDSL-PKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVL 62
            AE+I  L P L+ +AT S G D ID+   +  GI+V +TPDVL+D  A+ A+ L L   
Sbjct: 84  TAEVIRKLQPGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNAC 143

Query: 63  RR------FVRS---EDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRS 113
           RR       VRS           L   ++GR +GI G+GRIG A+A RA  FG  I Y +
Sbjct: 144 RRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHN 203

Query: 114 R------AEKPNTKYK-------------------------------------------- 123
           R       E+    +                                             
Sbjct: 204 RTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINIS 263

Query: 124 -GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKAT 182
            G L+++  L+ AL    L AA LDVF +EP +      L+N+ L PH  S T ETR A 
Sbjct: 264 RGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHETRDAM 323

Query: 183 ADIVIENLEACFLNKPLLTPV 203
             ++I+ +EA   +      +
Sbjct: 324 GWLLIQGIEALNQSDVPDNLI 344

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348

 Score =  218 bits (558), Expect = 3e-71
 Identities = 66/269 (24%), Positives = 101/269 (37%), Gaps = 69/269 (25%)

Query: 4   DAELIDSLPK-LEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVL 62
           +A+LI  LP  L++ A   AG D +DL    E+G+   N+        +D A+ L L+V 
Sbjct: 70  NADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVF 129

Query: 63  RRFVRSED-------------GEMGYKLTTKISGRSVGIIGLGRIGMAVAKRA-EAFGCF 108
           R    SE                   K      G  +G +GLG I   +A++A    G  
Sbjct: 130 RLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMK 189

Query: 109 ISY--RSR----AEK---------------------------PNTKY------------- 122
           + Y   +      EK                             T +             
Sbjct: 190 LVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPG 249

Query: 123 -------KGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGT 175
                  +G ++ +  L++AL   +L +A LDV E EPQV +EL  +++V L  H     
Sbjct: 250 SRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGVA 309

Query: 176 EETRKATADIVIENLEACFLN-KPLLTPV 203
            ET      + + N++   L  KPLLTP 
Sbjct: 310 IETFHEFERLTMTNIDRFLLQGKPLLTPA 338

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334

 Score =  214 bits (547), Expect = 1e-69
 Identities = 95/264 (35%), Positives = 124/264 (46%), Gaps = 64/264 (24%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
           D E+ ++ PKL IVA  + G D ID+ +  ++GI VTNTPDVLTD  AD A  L LA  R
Sbjct: 58  DKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATAR 117

Query: 64  R------FVRS---EDGEMGYKLT----TKISGRSVGIIGLGRIGMAVAKRAEAFGCFIS 110
                  FVRS   +   + +         + G+++GIIGLGRIG A+AKRA+ F   I 
Sbjct: 118 HVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRIL 177

Query: 111 YRSRAEKP------NTKYK----------------------------------------- 123
           Y SR  K       N ++K                                         
Sbjct: 178 YYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILI 237

Query: 124 ----GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETR 179
               G +VD + LV AL E  +A A LDVFE EP   EELF L+NVVL PH  S +   R
Sbjct: 238 NIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGAR 297

Query: 180 KATADIVIENLEACFLNKPLLTPV 203
           +  A++V +NL A    +   T V
Sbjct: 298 EGMAELVAKNLIAFKRGEIPPTLV 321

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311

 Score =  209 bits (535), Expect = 4e-68
 Identities = 85/257 (33%), Positives = 117/257 (45%), Gaps = 57/257 (22%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
           DAE++D    L+++A  S G+D +DL   +E+GI+VT+TP VLT+  AD  + L LAV R
Sbjct: 56  DAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVAR 115

Query: 64  R------FVRS---EDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR 114
           R      + R    +       L   + G ++G++G+GRIG AVAKRA AFG  + Y +R
Sbjct: 116 RVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHAR 175

Query: 115 AEKP-NTKYK---------------------------------------------GALVD 128
             KP    +                                              GALVD
Sbjct: 176 TPKPLPYPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVD 235

Query: 129 ESELVSALLEDRLAAAVLDVFEHEPQVP-EELFGLENVVLLPHAASGTEETRKATADIVI 187
              LV A L   L  A LDV + EP  P   L+ L N V+ PH  S    TR+  A++ +
Sbjct: 236 TEALVEA-LRGHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAV 294

Query: 188 ENLEACFLNKPLLTPVV 204
           ENL A    +    PVV
Sbjct: 295 ENLLAVLEGREPPNPVV 311

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320

 Score =  207 bits (528), Expect = 7e-67
 Identities = 74/263 (28%), Positives = 108/263 (41%), Gaps = 63/263 (23%)

Query: 4   DAELIDSLPK-LEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVL 62
             E+ID +P+ ++ ++T S G D IDL  CK +GI+V N P  +T   A+ A+ L L   
Sbjct: 57  RKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSA 116

Query: 63  RR------FVRS---EDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISY-- 111
           RR       +R+      E    +  K+  +++GI G G IG A+AKRA+ F   I Y  
Sbjct: 117 RRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFD 176

Query: 112 RSRAEK-------------------------------PNTKY------------------ 122
             RA                                 P T+Y                  
Sbjct: 177 THRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVN 236

Query: 123 --KGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRK 180
             +G LVD   +V+AL   RLA A  DVF  EP + E  + L N  L PH  S   + R+
Sbjct: 237 TARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQARE 296

Query: 181 ATADIVIENLEACFLNKPLLTPV 203
             A    + ++A F    +   +
Sbjct: 297 DMAHQANDLIDALFGGADMSYAL 319

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330

 Score =  202 bits (515), Expect = 8e-65
 Identities = 72/263 (27%), Positives = 113/263 (42%), Gaps = 63/263 (23%)

Query: 4   DAELIDSL-PKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVL 62
           D  ++D+    L++++T S G+D + L + K++GI+V  TPDVLTD  A+ A+ L L   
Sbjct: 66  DKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTC 125

Query: 63  RRFVRSE----DGE-----MGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFG-CFISYR 112
           RR   +     +G        +     ++  +VGIIGLGRIG A+A+R + FG     Y 
Sbjct: 126 RRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYT 185

Query: 113 SRAEKP------NTKYK------------------------------------------- 123
            R  +P        ++                                            
Sbjct: 186 GRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINI 245

Query: 124 --GALVDESELVSALLEDRLAAAVLDVFEHEP-QVPEELFGLENVVLLPHAASGTEETRK 180
             G +V++ +L  AL   ++AAA LDV   EP      L  L+N V+LPH  S T  TR 
Sbjct: 246 SRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRN 305

Query: 181 ATADIVIENLEACFLNKPLLTPV 203
             + +   NL A    +P+ + +
Sbjct: 306 TMSLLAANNLLAGLRGEPMPSEL 328

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Length = 330

 Score =  194 bits (496), Expect = 6e-62
 Identities = 55/272 (20%), Positives = 97/272 (35%), Gaps = 76/272 (27%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
           DA+ + + P+L ++     G D  D+  C  +G+ +T  PD+LT   A+ AIGL + + R
Sbjct: 58  DADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 117

Query: 64  RFVRSE----DGE--------MGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISY 111
               ++     G+         G    T +   +VG +G+G IG+A+A R + +G  + Y
Sbjct: 118 HLRAADAFVRSGKFRGWQPRFYG----TGLDNATVGFLGMGAIGLAMADRLQGWGATLQY 173

Query: 112 RSR-------AEKPNTKYK----------------------------------------- 123
                      ++   +                                           
Sbjct: 174 HEAKALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLV 233

Query: 124 ----GALVDESELVSALLEDRLAAAVLDVFEHE--------PQVPEELFGLENVVLLPHA 171
               G++VDE+ +++AL   +L     DVFE E         Q+   L    N +  PH 
Sbjct: 234 NPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHI 293

Query: 172 ASGTEETRKATADIVIENLEACFLNKPLLTPV 203
            S     R        +N+      +  +  V
Sbjct: 294 GSAVRAVRLEIERCAAQNILQALAGERPINAV 325

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303

 Score =  188 bits (480), Expect = 7e-60
 Identities = 50/256 (19%), Positives = 77/256 (30%), Gaps = 57/256 (22%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
            AE +  +P+L+ +   +AGLD +         + V        D VA+ A+ L LA  +
Sbjct: 41  TAEELAKMPRLKFIQVVTAGLDHLPWESIPP-HVTVAGNAGSNADAVAEFALALLLAPYK 99

Query: 64  RFVRSED----GE-MGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISY--RSRAE 116
           R ++  +    G+         I G  V ++GLG IG  V K   A G  +    R+  E
Sbjct: 100 RIIQYGEKMKRGDYGRDVEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE 159

Query: 117 KPNTKYK---------------------------------------------GALVDESE 131
            P                                                    ++D   
Sbjct: 160 GPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDG 219

Query: 132 LVSALLEDRLAAAVLDVFEHEPQVPE--ELFGLENVVLLPHAASGTEETR--KATADIVI 187
           ++  L E        DV+       +  E F L NVV  P  A G    R  +      +
Sbjct: 220 VLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGYGNERVWRQMVMEAV 279

Query: 188 ENLEACFLNKPLLTPV 203
            NL             
Sbjct: 280 RNLITYATGGRPRNIA 295

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Length = 333

 Score =  178 bits (454), Expect = 1e-55
 Identities = 64/263 (24%), Positives = 106/263 (40%), Gaps = 63/263 (23%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
             E++++  +L++++  SAG D IDL +  ++GI VT    +L++ VA+  +GL + ++R
Sbjct: 55  TREVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMR 114

Query: 64  RFV------------RSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISY 111
           +                     G+K    + G+ VGI+G+G IG A+A+R   FG  + Y
Sbjct: 115 KIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYY 174

Query: 112 ------RSRAEKPNTKY------------------------------------------- 122
                  +  ++   +Y                                           
Sbjct: 175 WSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGKYLVNI 234

Query: 123 -KGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLE-NVVLLPHAASGTEETRK 180
            +GALVDE  +  A+ + +L     DVFE EP    ELF  E   VL PH A    E ++
Sbjct: 235 GRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQE 294

Query: 181 ATADIVIENLEACFLNKPLLTPV 203
                 +ENL      +     V
Sbjct: 295 DVGFRAVENLLKVLRGEVPEDLV 317

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Length = 393

 Score =  170 bits (433), Expect = 6e-52
 Identities = 47/267 (17%), Positives = 81/267 (30%), Gaps = 70/267 (26%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
             E I     L++  T   G D +DL    ++ + V       +  VA+  + + L+++R
Sbjct: 104 TPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVR 163

Query: 64  RFV------------RSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGC---- 107
            ++             ++     Y L        VG +  GRIG+AV +R   F      
Sbjct: 164 NYLPSHEWARKGGWNIADCVSHAYDLE----AMHVGTVAAGRIGLAVLRRLAPFDVHLHY 219

Query: 108 ---FISYRSRAEKPNTKYK----------------------------------------- 123
                   S  ++ N  +                                          
Sbjct: 220 TDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYI 279

Query: 124 -----GALVDESELVSALLEDRLAAAVLDVFEHEPQVPE-ELFGLENVVLLPHAASGTEE 177
                G L D   +  AL   RLA    DV+  +P   +     +    + PH +  T  
Sbjct: 280 VNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLT 339

Query: 178 TRKATADIVIENLEACFLNKPLLTPVV 204
            +   A    E LE  F  +P+    +
Sbjct: 340 AQARYAAGTREILECFFEGRPIRDEYL 366

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score =  165 bits (419), Expect = 1e-50
 Identities = 54/260 (20%), Positives = 100/260 (38%), Gaps = 60/260 (23%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
              L     +L+ V   SAG+D + L   +  G+ V NT  +  D ++++ +   L+V+R
Sbjct: 52  KTILARPTNQLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVR 111

Query: 64  RFVRSEDGEMGYK------LTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISY--RSRA 115
            +  +   + G +       T+ ++G+ + I G G+IG ++A +A A G  +     +  
Sbjct: 112 GYHAAWLNQRGARQWALPMTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGH 171

Query: 116 EK-----------------------------PNTKY--------------------KGAL 126
                                          P T +                    +G  
Sbjct: 172 PADHFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPA 231

Query: 127 VDESELVSALLEDRLAAAVLDVFEHEPQVPEE--LFGLENVVLLPHAASGTEETRKATAD 184
           VD + L++AL   +L+ A LDV E EP +P +  L+  ++V++ PH +      R     
Sbjct: 232 VDTTALMTALDHHQLSMAALDVTEPEP-LPTDHPLWQRDDVLITPHISGQIAHFRATVFP 290

Query: 185 IVIENLEACFLNKPLLTPVV 204
           I   N      +  L+   V
Sbjct: 291 IFAANFAQFVKDGTLVRNQV 310

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347

 Score =  157 bits (398), Expect = 4e-47
 Identities = 61/267 (22%), Positives = 94/267 (35%), Gaps = 67/267 (25%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
             E ++    L I+    +G D ID+    + GI V N P    ++ AD+ +   L + R
Sbjct: 76  TREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYR 135

Query: 64  RFV------------RSEDGEMGYKLT-TKISGRSVGIIGLGRIGMAVAKRAEAFGCFIS 110
           R              +S +          +I G ++GIIGLGR+G AVA RA+AFG  + 
Sbjct: 136 RATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVL 195

Query: 111 Y------RSRAEK--------------------------PNTKY-----------KGA-- 125
           +                                       +  +           +GA  
Sbjct: 196 FYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFL 255

Query: 126 -------LVDESELVSALLEDRLAAAVLDVFEHEPQVPEE--LFGLENVVLLPHAASGTE 176
                  LVDE  L  AL E R+  A LDV E EP    +  L    N++  PHAA  +E
Sbjct: 256 VNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSE 315

Query: 177 ETRKATADIVIENLEACFLNKPLLTPV 203
           +      +     +      +   +  
Sbjct: 316 QASIEMREEAAREIRRAITGRIPDSLK 342

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290

 Score =  154 bits (392), Expect = 7e-47
 Identities = 48/248 (19%), Positives = 86/248 (34%), Gaps = 56/248 (22%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
             +      + +++   SAG+D ID+    E  +  +N     +  VA+ A  L LA  +
Sbjct: 40  IKDRYVLGKRTKMIQAISAGVDHIDVNGIPENVVLCSNAG-AYSISVAEHAFALLLAHAK 98

Query: 64  RFVRSED----GEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISY---RSRAE 116
             + + +    G      TT + G+++GI+G G IG  VA  A+AFG  +      S  +
Sbjct: 99  NILENNELMKAGIFRQSPTTLLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQ 158

Query: 117 KPNTKYK---------------------------------------------GALVDESE 131
             +   +                                               +V + +
Sbjct: 159 NVDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPD 218

Query: 132 LVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPH-AASGTEETRKATADIVIENL 190
           ++  L E      + DV+ +EP        L N +L PH A   + E       +  EN+
Sbjct: 219 MIGFLKERSDVWYLSDVWWNEP--EITETNLRNAILSPHVAGGMSGEIMDIAIQLAFENV 276

Query: 191 EACFLNKP 198
              F  + 
Sbjct: 277 RNFFEGEG 284

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351

 Score =  148 bits (376), Expect = 9e-44
 Identities = 49/267 (18%), Positives = 87/267 (32%), Gaps = 70/267 (26%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
            AE I     L+++ T   G D IDL      G+ V          VA+  +   L ++R
Sbjct: 77  TAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMR 136

Query: 64  RFV------------RSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISY 111
            FV             +      Y L     G+++G +G GRIG  + +R + FGC + Y
Sbjct: 137 NFVPGYNQVVKGEWNVAGIAYRAYDLE----GKTIGTVGAGRIGKLLLQRLKPFGCNLLY 192

Query: 112 -------RSRAEKPNTKY------------------------------------------ 122
                      ++   K+                                          
Sbjct: 193 HDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLI 252

Query: 123 ----KGALVDESELVSALLEDRLAAAVLDVFEHEPQVPE-ELFGLENVVLLPHAASGTEE 177
               +GA+++   +V A+    +     DV++ +P   +     + N  + PH +  T +
Sbjct: 253 VNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTID 312

Query: 178 TRKATADIVIENLEACFLNKPLLTPVV 204
            +   A    + LE  F  +   T   
Sbjct: 313 AQLRYAAGTKDMLERYFKGEDFPTENY 339

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Length = 307

 Score =  143 bits (362), Expect = 3e-42
 Identities = 78/249 (31%), Positives = 108/249 (43%), Gaps = 66/249 (26%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
              +I+S PKL+++A    GLD ID+   KEKGI+V N P   +  VA+ A+GL  +V R
Sbjct: 57  TRRVIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVAR 116

Query: 64  RFVRS----EDGE------MGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISY-- 111
           +   +     +G       MG +L     G+++GIIG GRIG  VAK A A G  I    
Sbjct: 117 KIAFADRKMREGVWAKKEAMGIELE----GKTIGIIGFGRIGYQVAKIANALGMNILLYD 172

Query: 112 ----RSRAEKPNTKYK-------------------------------------------- 123
                 RA++ N K+                                             
Sbjct: 173 PYPNEERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTS 232

Query: 124 -GALVDESELVSALLEDRLAAAVLDVFEHEPQVPE-ELFGLENVVLLPHAASGTEETRKA 181
            G +VD + LV AL E  +A A LDVFE EP   +  L   +NVVL PH  + T E ++ 
Sbjct: 233 RGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQER 292

Query: 182 TADIVIENL 190
               V E +
Sbjct: 293 AGVEVAEKV 301

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333

 Score =  137 bits (348), Expect = 7e-40
 Identities = 52/277 (18%), Positives = 88/277 (31%), Gaps = 80/277 (28%)

Query: 3   ADAELIDSLPK--LEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLA 60
             AE + +L    +  ++  + G+D ID+ K KE G Q+TN P    + +A+ A      
Sbjct: 58  YIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAAR 117

Query: 61  VLRRFVRSE----------DGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGC-FI 109
           +LR+    +             +G ++      + VG++G G IG    +  E FG   I
Sbjct: 118 ILRQDKAMDEKVARHDLRWAPTIGREV----RDQVVGVVGTGHIGQVFMQIMEGFGAKVI 173

Query: 110 SY----RSRAEKPNTKY------------------------------------KGA---- 125
           +Y        EK                                         +      
Sbjct: 174 TYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVN 233

Query: 126 -----LVDESELVSALLEDRLAAAVLDVFEHEPQVP--------------EELFGLENVV 166
                LVD   ++  L   ++    +DV+E E  +                +L    NV+
Sbjct: 234 VSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVL 293

Query: 167 LLPHAASGTEETRKATADIVIENLEACFLNKPLLTPV 203
           + P  A  T    +       +N       K   TPV
Sbjct: 294 VTPKTAFYTTHAVRNMVVKAFDNNLELVEGKEAETPV 330

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Length = 335

 Score =  135 bits (341), Expect = 9e-39
 Identities = 67/258 (25%), Positives = 105/258 (40%), Gaps = 67/258 (25%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
            A++I++  KL++V     G+D +DL     KGI V NTP+  +   A+   G+ + + R
Sbjct: 80  TADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLAR 139

Query: 64  RFVRS----EDGE------MGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGC------ 107
           +  ++    +DG+      MG +L     G+++GI+GLGRIG  VA R ++FG       
Sbjct: 140 QIPQATASMKDGKWERKKFMGTELN----GKTLGILGLGRIGREVATRMQSFGMKTIGYD 195

Query: 108 -FISYRSRAEK-------------------------PNTKY------------------- 122
             IS    +                           P+T                     
Sbjct: 196 PIIS-PEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNC 254

Query: 123 -KGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKA 181
            +G +VDE  L+ AL   + A A LDVF  EP     L   ENV+  PH  + T+E +  
Sbjct: 255 ARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSR 314

Query: 182 TADIVIENLEACFLNKPL 199
             + +          K L
Sbjct: 315 CGEEIAVQFVDMVKGKSL 332

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352

 Score =  135 bits (341), Expect = 1e-38
 Identities = 63/280 (22%), Positives = 91/280 (32%), Gaps = 83/280 (29%)

Query: 4   DAELIDSLPKLEIVATC----SAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTL 59
             +L+D LPKL+I++            IDL  C +KG+ V           A+    L +
Sbjct: 62  TRQLLDRLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVVLEGKGS-PVAPAELTWALVM 120

Query: 60  AVLRRFV------------RSEDGEMGYKLTTKI----SGRSVGIIGLGRIGMAVAKRAE 103
           A  RR              +S            I     G+++GI G G+IG  VA    
Sbjct: 121 AAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGR 180

Query: 104 AFGC-------FISYRSRAEK--------------------------PNTKY-------- 122
           AFG          S + RA                              T+         
Sbjct: 181 AFGMNVLVWGRENS-KERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLT 239

Query: 123 ---KGA---------LVDESELVSALLEDRLAAAVLDVFEHEPQVPEE-LFGLENVVLLP 169
                A         LV+E+ +V+AL   R   A +DVFE EP +    L  +EN +  P
Sbjct: 240 RMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTP 299

Query: 170 HAASGTEETRKATADIVIENLEACF-------LNKPLLTP 202
           H      E+ +    I  +N+            N   L P
Sbjct: 300 HIGYVERESYEMYFGIAFQNILDILQGNVDSVANPTALAP 339

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529

 Score =  137 bits (348), Expect = 2e-38
 Identities = 68/261 (26%), Positives = 104/261 (39%), Gaps = 65/261 (24%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
           DAE++ + PKL+IVA    GLD +D+     +G+ V N P       A+ A+ L LA  R
Sbjct: 57  DAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASR 116

Query: 64  RFVRS----EDGE------MGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISY-- 111
           +   +     +         G ++     G++VG++GLGRIG  VA+R  AFG ++    
Sbjct: 117 QIPAADASLREHTWKRSSFSGTEIF----GKTVGVVGLGRIGQLVAQRIAAFGAYVVAYD 172

Query: 112 ----RSRAEKPNTKY--------------------------------------------- 122
                +RA +   +                                              
Sbjct: 173 PYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAA 232

Query: 123 KGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKAT 182
           +G LVDE+ L  A+    + AA LDVF  EP     LF L  VV+ PH  + T E +   
Sbjct: 233 RGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRA 292

Query: 183 ADIVIENLEACFLNKPLLTPV 203
              V E++      + +   V
Sbjct: 293 GTDVAESVRLALAGEFVPDAV 313

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333

 Score =  133 bits (337), Expect = 3e-38
 Identities = 54/275 (19%), Positives = 97/275 (35%), Gaps = 76/275 (27%)

Query: 3   ADAELIDSL--PKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLA 60
             A + + +    ++ +   + G D ID+   K+ GI+++N P      +A+ A+  TL 
Sbjct: 56  YAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLY 115

Query: 61  VLRR----FVRSEDGEMGYKLTTK-----ISGRSVGIIGLGRIGMAVAKRAEAFGCFI-- 109
           +LR       + + G+  Y+         +  ++VG++G G IG    K  + FG  +  
Sbjct: 116 LLRNMGKVQAQLQAGD--YEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIA 173

Query: 110 --SYRSRAEKPNTKYK-------------------------------------------- 123
              Y  + + P+  Y                                             
Sbjct: 174 YDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTA 233

Query: 124 -GALVDESELVSALLEDRLAAAVLDVFEHEP--------------QVPEELFGLENVVLL 168
              L+D   ++S L   +LA   +D +E+E                + +EL G+ NVVL 
Sbjct: 234 RPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLS 293

Query: 169 PHAASGTEETRKATADIVIENLEACFLNKPLLTPV 203
           PH A  TE          +++L          T V
Sbjct: 294 PHIAYYTETAVHNMVYFSLQHLVDFLTKGETSTEV 328

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313

 Score =  131 bits (333), Expect = 9e-38
 Identities = 60/259 (23%), Positives = 101/259 (38%), Gaps = 66/259 (25%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
             ++I+   KL+I+A    GLD ID  + +++ I+V   P   TD   +  IGL +A  R
Sbjct: 59  TKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAAR 118

Query: 64  RFVRS----EDGE----MGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISY---- 111
           +   S    + G      G +L     G+++GI+G GRIG  V   A A G  +      
Sbjct: 119 KMYTSMALAKSGIFKKIEGLELA----GKTIGIVGFGRIGTKVGIIANAMGMKVLAYDIL 174

Query: 112 --RSRAEK-------------------------PNTKY--------------------KG 124
             R +AEK                          + K                     + 
Sbjct: 175 DIREKAEKINAKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRA 234

Query: 125 ALVDESELVSALLEDRLAAAVLDVFEHEP---QVPEELFGLENVVLLPHAASGTEETRKA 181
             V+   L+  + + ++ A   DVF +EP   +   EL   E V++  H  + T+E +K 
Sbjct: 235 VAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKR 294

Query: 182 TADIVIENLEACFLNKPLL 200
            A++  +NL        ++
Sbjct: 295 VAEMTTQNLLNAMKELGMI 313

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331

 Score =  131 bits (333), Expect = 1e-37
 Identities = 49/276 (17%), Positives = 90/276 (32%), Gaps = 77/276 (27%)

Query: 3   ADAELIDSLPKLEI--VATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLA 60
           A+ + +D   KL +  + T +AG D ID    KE G  +   P    + +A+ A+   + 
Sbjct: 57  ANKQNLDIYKKLGVKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMM 116

Query: 61  VLRRFV----RSEDGEMGYKLTTKISGRS-----VGIIGLGRIGMAVAKRAEAFGCFI-- 109
           +LR       R+      +K+   +  +      VG++GLGRIG   A+     G  +  
Sbjct: 117 LLRHTAYTTSRTAKKN--FKVDAFMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIG 174

Query: 110 --SYRSRAEKPNTKY--------------------------------------------- 122
              +  +  +                                                  
Sbjct: 175 EDVFEIKGIEDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCA 234

Query: 123 KGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEE---------------LFGLENVVL 167
           +G LVD   ++ A+   +L     DV + E  V  +               +     V++
Sbjct: 235 RGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLI 294

Query: 168 LPHAASGTEETRKATADIVIENLEACFLNKPLLTPV 203
            PH  S T+E  K   ++  +NL+           +
Sbjct: 295 TPHLGSYTDEAVKNMVEVSYQNLKDLAETGDCPNKI 330

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364

 Score =  129 bits (327), Expect = 2e-36
 Identities = 55/274 (20%), Positives = 86/274 (31%), Gaps = 78/274 (28%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKG--IQVTNTPDVLTDDVADAAIGLTLAV 61
             E ID   KL++V     G D IDL    + G  I V          VA+  +   L +
Sbjct: 75  TKERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVL 134

Query: 62  LRRFV------------RSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGC-F 108
           +R FV             +   +  Y +     G+++  IG GRIG  V +R   F    
Sbjct: 135 VRNFVPAHEQIINHDWEVAAIAKDAYDIE----GKTIATIGAGRIGYRVLERLVPFNPKE 190

Query: 109 ISY-------RSRAEK--------------------------PNTKY-----------KG 124
           + Y       +   EK                            TK            KG
Sbjct: 191 LLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKG 250

Query: 125 A---------LVDESELVSALLEDRLAAAVLDVFEHEPQVPE-ELFGLENV-----VLLP 169
           A         +    ++ +AL   +L     DV+  +P   +     + N       + P
Sbjct: 251 AWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTP 310

Query: 170 HAASGTEETRKATADIVIENLEACFLNKPLLTPV 203
           H +  T + +   A   +  LE+ F  K    P 
Sbjct: 311 HYSGTTLDAQTRYAQGTVNILESFFTGKFDYRPQ 344

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324

 Score =  118 bits (299), Expect = 1e-32
 Identities = 54/256 (21%), Positives = 97/256 (37%), Gaps = 61/256 (23%)

Query: 5   AELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR 64
             L+    KL    +  AG+D + L     +  Q+TN   +    +++   G  L+++R+
Sbjct: 59  KPLLAKANKLSWFQSTYAGVDVL-LDARCRRDYQLTNVRGIFGPLMSEYVFGHLLSLMRQ 117

Query: 65  FVRSED----GEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK--- 117
                +              + GR++ I+G G IG  +A   + FG  +   SR+ +   
Sbjct: 118 LPLYREQQKQRLWQSHPYQGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERA 177

Query: 118 -------------------------PNTKY--------------KGA---------LVDE 129
                                    P T+                GA          ++E
Sbjct: 178 GFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINE 237

Query: 130 SELVSALLEDRLAAAVLDVFEHEPQVPEE--LFGLENVVLLPHAASGTEETRKATADIVI 187
            +L++AL   +L  AVLDVFE EP +P +  L+G  N+++ PH ++ +       A I +
Sbjct: 238 GDLLTALRTGKLGMAVLDVFEQEP-LPADSPLWGQPNLIITPHNSAYS--FPDDVAQIFV 294

Query: 188 ENLEACFLNKPLLTPV 203
            N       +PL   +
Sbjct: 295 RNYIRFIDGQPLDGKI 310

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404

 Score =  113 bits (285), Expect = 3e-30
 Identities = 61/264 (23%), Positives = 94/264 (35%), Gaps = 68/264 (25%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
             ++I++  KL  +   + G +++DL    ++GI V N P   T  VA+  IG  L +LR
Sbjct: 60  TEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLR 119

Query: 64  R-FVRSE---DGE------MGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFIS--- 110
                +     G         ++      G+ +GIIG G IG  +   AE+ G ++    
Sbjct: 120 GVPEANAKAHRGVGNKLAAGSFEAR----GKKLGIIGYGHIGTQLGILAESLGMYVYFYD 175

Query: 111 -YRSRAEK-------------------------PNTKY-----------KGA-------- 125
                                            P+TK             G+        
Sbjct: 176 IENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRG 235

Query: 126 -LVDESELVSALLEDRLAAAVLDVFEHEPQVPEE-----LFGLENVVLLPHAASGTEETR 179
            +VD   L  AL    LA A +DVF  EP    +     L   +NV+L PH    T+E +
Sbjct: 236 TVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQ 295

Query: 180 KATADIVIENLEACFLNKPLLTPV 203
           +     V   L     N   L+ V
Sbjct: 296 ENIGLEVAGKLIKYSDNGSTLSAV 319

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Length = 416

 Score =  108 bits (271), Expect = 5e-28
 Identities = 67/264 (25%), Positives = 97/264 (36%), Gaps = 68/264 (25%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
             E+  +  +L  V   S G ++++L   +++GI V N P   T  VA+  IG  + ++R
Sbjct: 71  TEEIFAAANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMR 130

Query: 64  R-FVRSE---DGE------MGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISY-- 111
           R F RS     G          ++     G+++GI+G G IG  V   AE+ G  + Y  
Sbjct: 131 RIFPRSVSAHAGGWEKTAIGSREVR----GKTLGIVGYGNIGSQVGNLAESLGMTVRYYD 186

Query: 112 -RSRAEK--------------------------PNTKY-----------KGA-------- 125
              + +                            +T             KGA        
Sbjct: 187 TSDKLQYGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARG 246

Query: 126 -LVDESELVSALLEDRLAAAVLDVFEHEPQVPEE-----LFGLENVVLLPHAASGTEETR 179
             VD   L   L E  LA A +DVF  EP    E     L GLENV+L PH    TEE +
Sbjct: 247 SDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEEAQ 306

Query: 180 KATADIVIENLEACFLNKPLLTPV 203
           +     V   L         +  V
Sbjct: 307 ERIGTEVTRKLVEYSDVGSTVGAV 330

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315

 Score =  104 bits (262), Expect = 2e-27
 Identities = 54/261 (20%), Positives = 89/261 (34%), Gaps = 66/261 (25%)

Query: 6   ELIDSLPKLEIVATCSAGLDKI-----DLVKCKEKGIQVTNTPDV-LTDDVADAAIGLTL 59
             + +  +L+ V    AG+D I        +  +  I +    D  +   + + A+   L
Sbjct: 52  VEMLAGRRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVL 111

Query: 60  AVLRRFVRSE----DGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA 115
              RRF   +                   SVGI+G G +G  VA+  +A+G  +   SR+
Sbjct: 112 HWFRRFDDYQALKNQALWKPLPEYTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRS 171

Query: 116 EK-------------------------------PNTKY-----------KGA-------- 125
            K                                 T              GA        
Sbjct: 172 RKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARG 231

Query: 126 -LVDESELVSALLEDRLAAAVLDVFEHEPQVPEE--LFGLENVVLLPHAASGTEETRKAT 182
             V E++L++AL   +L  A+LDVF  EP +P+E  L+    V + PH A+ T       
Sbjct: 232 VHVQEADLLAALDSGKLKGAMLDVFSQEP-LPQESPLWRHPRVAMTPHIAAVT--RPAEA 288

Query: 183 ADIVIENLEACFLNKPLLTPV 203
            D +   +      +P+   V
Sbjct: 289 IDYISRTITQLEKGEPVTGQV 309

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381

 Score =  100 bits (252), Expect = 2e-25
 Identities = 47/253 (18%), Positives = 83/253 (32%), Gaps = 67/253 (26%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
           +  L+     +  V T +AG D +D    K+ GI  +  P      V +      L +  
Sbjct: 53  NESLLSG-TPINFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAE 111

Query: 64  RFVRSEDGEMGYKLTTKISGRSVGIIGLGRI-----------GMAV-----AKRAEAFGC 107
           R         G+ L      R++GI+G+G +           G+        + A     
Sbjct: 112 R--------DGFSLR----DRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARGDEG 159

Query: 108 -------------FIS----------YRSR----AE-----KPNTKY----KGALVDESE 131
                         ++          Y++            KP        +G +VD + 
Sbjct: 160 DFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAA 219

Query: 132 LVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATADIVIENLE 191
           L++ L   +  + VLDV+E EP +   L    ++    H A  T E +      V E   
Sbjct: 220 LLARLNAGQPLSVVLDVWEGEPDLNVALLEAVDIG-TSHIAGYTLEGKARGTTQVFEAYS 278

Query: 192 ACFLNKPLLTPVV 204
           A F+ +     + 
Sbjct: 279 A-FIGREQRVALE 290

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380

 Score =  100 bits (251), Expect = 2e-25
 Identities = 47/236 (19%), Positives = 76/236 (32%), Gaps = 67/236 (28%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
               +     +  V TC+ G D +DL    E GI  ++ P      V D  +G  L  + 
Sbjct: 50  SRAALAG-SPVRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGC-LLAMA 107

Query: 64  RFVRSEDGEMGYKLTTKISGRSVGIIGLGRI-----------GMAVA-----KRAEAFGC 107
               ++           ++ R+ G++G G++           G  V      ++A     
Sbjct: 108 EVRGAD-----------LAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAREPDG 156

Query: 108 -------------FIS----------YRSR----AE-----KPNTKY----KGALVDESE 131
                         IS          + +R           +P T      +GA+VD   
Sbjct: 157 EFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQA 216

Query: 132 LVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPH-AASGTEETRKATADIV 186
           L   L         LDV+E EPQ  +       ++  PH A    E   + TA I 
Sbjct: 217 LRRLLEGGADLEVALDVWEGEPQ-ADPELAARCLIATPHIAGYSLEGKLRGTAQIY 271

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 43.4 bits (102), Expect = 1e-05
 Identities = 27/140 (19%), Positives = 49/140 (35%), Gaps = 17/140 (12%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
             E+I+  P   +V +  +          K+    +     ++  D         +A+  
Sbjct: 87  TEEMIEKTPNHCVVYSGISNTYLNQC--MKKTNRTL---VKLMERD--------DIAIYN 133

Query: 64  RFVRSEDG-EMGYKLTTK-ISGRSVGIIGLGRIGMAVAKRAEAFGC--FISYRSRAEKPN 119
               +E    M  + T   I G +V ++GLGR+GM+VA++  A G    +  R       
Sbjct: 134 SIPTAEGTIMMAIQHTDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLAR 193

Query: 120 TKYKGALVDESELVSALLED 139
               G         +  L D
Sbjct: 194 IAEMGMEPFHISKAAQELRD 213

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	204
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	100.0
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	100.0
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	100.0
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	100.0
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	100.0
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	100.0
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	100.0
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	100.0
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	100.0
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	100.0
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	100.0
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	100.0
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	100.0
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	100.0
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	100.0
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	100.0
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	100.0
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	100.0
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	100.0
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	100.0
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	100.0
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	100.0
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	100.0
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	100.0
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	100.0
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	100.0
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	100.0
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	100.0
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	100.0
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	100.0
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	100.0
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	100.0
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	100.0
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	99.94
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	99.94
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.81
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	99.72
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	99.66
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.65
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	99.61
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	99.47
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	99.35
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	99.13
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	98.98
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	98.79
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	98.56
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	98.48
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	98.23
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	97.99
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	97.96
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	97.76
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	97.74
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	97.6
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	97.51
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	97.48
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	97.42
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	97.41
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.41
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	97.4
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	97.4
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.36
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	97.34
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	97.31
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	97.29
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	97.29
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	97.29
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	97.26
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	97.24
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	97.23
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	97.22
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.21
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	97.18
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.16
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	97.14
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	97.13
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	97.13
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.11
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	97.06
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	96.11
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	97.04
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	97.04
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.03
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	96.99
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.91
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	96.9
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	96.85
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	96.85
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	96.83
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	96.82
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.8
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	96.78
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	96.77
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	96.75
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	96.73
3qha_A	296	Putative oxidoreductase; seattle structural genomi	96.73
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.69
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	96.68
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	96.65
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.62
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.59
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	96.58
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	96.56
1bgv_A	449	Glutamate dehydrogenase; oxidoreductase; HET: GLU;	96.55
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	96.53
4ezb_A	317	Uncharacterized conserved protein; structural geno	96.51
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	96.5
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	96.43
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	96.42
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	96.41
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	96.4
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	96.38
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	96.35
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	96.35
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	96.33
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.31
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	96.31
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	96.28
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	96.27
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	96.25
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	96.22
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	96.2
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	96.18
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	96.18
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	96.15
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	96.12
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	96.09
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	96.08
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	96.06
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	96.03
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.02
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	96.01
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	95.94
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	95.94
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	95.91
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	95.91
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	95.9
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	95.87
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	95.84
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	95.8
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	95.77
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	95.77
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	95.76
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	95.76
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	95.75
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	95.73
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	95.7
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	95.67
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	95.62
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	95.6
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	95.52
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	95.52
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	95.51
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	95.47
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.45
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	95.43
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	95.42
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	95.41
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	95.39
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	95.39
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	95.38
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	95.37
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	95.36
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	95.34
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	95.32
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	95.3
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	95.27
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	95.26
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	95.26
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	95.25
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	95.25
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	95.23
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	95.21
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	95.13
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	95.13
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	95.11
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	95.1
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	95.09
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	95.08
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	95.08
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	95.07
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	95.07
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	95.06
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	95.05
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	95.03
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	95.03
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	95.02
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	95.02
3rih_A	293	Short chain dehydrogenase or reductase; structural	95.02
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	95.0
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	95.0
3l07_A	285	Bifunctional protein fold; structural genomics, ID	94.97
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	94.93
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	94.93
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	94.93
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	94.92
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	94.92
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	94.92
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	94.91
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	94.91
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	94.9
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	94.9
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	94.89
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	94.89
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	94.87
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	94.86
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	94.86
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	94.86
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	94.85
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	94.84
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	94.84
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	94.82
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	94.78
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	94.77
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	94.76
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	94.74
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	94.74
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	94.72
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	94.71
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	94.71
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	94.69
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	94.68
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	94.68
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	94.66
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	94.63
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	94.63
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	94.62
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	94.6
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	94.6
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	94.59
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	94.56
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	94.55
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	94.54
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	94.54
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	94.54
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	94.52
3on5_A	362	BH1974 protein; structural genomics, joint center	94.51
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	94.49
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	94.48
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	94.47
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	94.47
3imf_A	257	Short chain dehydrogenase; structural genomics, in	94.46
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	94.46
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	94.42
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	94.42
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	94.4
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	94.38
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	94.37
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	94.37
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	94.37
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	94.37
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	94.35
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	94.34
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	94.34
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	94.33
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	94.33
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	94.32
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	94.32
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	94.32
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	94.31
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	94.3
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	94.3
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	94.3
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	94.29
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	94.29
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	94.29
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	94.29
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	94.28
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	94.27
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	94.26
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	94.25
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	94.25
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	94.21
1xq6_A	253	Unknown protein; structural genomics, protein stru	94.21
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	94.21
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	94.19
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	94.19
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	94.17
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	94.17
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	94.16
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	94.16
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	94.15
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	94.15
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	94.14
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	94.11
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	94.09
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	94.07
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	94.06
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	94.04
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	94.03
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	94.02
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	94.02
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	94.01
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	93.99
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	93.98
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	93.98
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	93.98
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	93.97
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	93.97
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	93.97
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	93.97
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	93.96
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	93.94
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	93.93
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	93.93
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	93.91
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	93.89
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	93.87
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	93.87
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	93.85
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	93.84
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	93.84
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	93.84
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	93.79
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	93.79
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	93.78
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	93.77
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	93.76
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	93.74
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	93.74
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	93.73
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	93.71
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	93.7
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	93.7
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	93.69
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	93.67
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	93.67
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	93.66
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	93.66
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	93.65
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	93.65
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	93.64
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	93.62
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	93.62
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	93.6
4dqx_A	277	Probable oxidoreductase protein; structural genomi	93.6
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	93.6
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	93.59
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	93.59
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	93.59
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	93.58
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	93.57
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	93.55
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	93.55
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	93.55
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	93.54
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	93.54
3cxt_A	291	Dehydrogenase with different specificities; rossma	93.5
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	93.5
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	93.49
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	93.49
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	93.48
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	93.48
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	93.47
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	93.47
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	93.47
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	93.43
4eye_A	342	Probable oxidoreductase; structural genomics, niai	93.42
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	93.42
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	93.41
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	93.4
1obf_O	335	Glyceraldehyde 3-phosphate dehydrogenase; glycolyt	93.4
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	93.39
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	93.38
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	93.37
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	93.36
3gms_A	340	Putative NADPH:quinone reductase; structural genom	93.35
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	93.35
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	93.35
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	93.34
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	93.34
2duw_A	145	Putative COA-binding protein; ligand binding prote	93.32
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	93.31
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	93.31
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	93.28
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	93.28
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	93.27
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	93.27
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	93.25
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	93.24
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	93.24
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	93.24
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	93.24
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	93.23
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	93.23
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	93.22
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	93.2
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	93.2
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	93.16
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	93.16
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	93.15
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	93.13
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	93.13
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	93.1
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	93.09
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	93.06
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	93.04
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	93.02
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	92.99
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	92.99
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	92.98
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	92.97
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	92.97
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	92.97
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	92.96
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	92.95
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	92.92
2g82_O	331	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G	92.9
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	92.88
2ep7_A	342	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; o	92.86
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	92.84
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	92.83
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	92.81
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	92.81
1xkq_A	280	Short-chain reductase family member (5D234); parra	92.8
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	92.79
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	92.76
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	92.76
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	92.76
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	92.75
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	92.73
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	92.72
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	92.71
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	92.7
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	92.7
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	92.69
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	92.68
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	92.68
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	92.65
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	92.64
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	92.64
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	92.63
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	92.59
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	92.57
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	92.56
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	92.55
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	92.55
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	92.55
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	92.54
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	92.51
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	92.51
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	92.49
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	92.48
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	92.47
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	92.47
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	92.46
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	92.45
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	92.38
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	92.37
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	92.37
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	92.37
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	92.37
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	92.35
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	92.35
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	92.34
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	92.34
1kjq_A	391	GART 2, phosphoribosylglycinamide formyltransferas	92.3
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	92.3
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	92.27
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	92.27
1xhl_A	297	Short-chain dehydrogenase/reductase family member	92.23
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	92.21
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	92.19
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	92.18
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	92.16
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	92.14
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	92.12
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	92.1
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	92.09
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	92.05
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	92.02
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	91.98
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	91.98
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	91.97
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	91.96
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	91.95
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	91.95
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	91.94
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	91.93
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	91.92
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	91.92
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	91.9
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	91.86
4dim_A	403	Phosphoribosylglycinamide synthetase; structural g	91.86
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	91.83
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	91.81
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	91.81
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	91.79
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	91.79
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	91.78
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	91.77
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	91.77
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	91.77
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	91.76
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	91.75
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	91.7
3hja_A	356	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; n	91.69
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	91.68
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	91.67

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=100.00  E-value=2.5e-58  Score=396.49  Aligned_cols=204  Identities=42%  Similarity=0.638  Sum_probs=174.4

Q ss_pred             CCCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCC-
Q 045521            1 VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEM-   73 (204)
Q Consensus         1 t~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~-   73 (204)
                      +++++++++++|+||+|++.|+|+|+||+++|+++||.|+|+||+++++||||++++||++.|+      .+++|.|.+ 
T Consensus        81 ~~i~~~~l~~~p~Lk~I~~~g~G~d~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~  160 (340)
T 4dgs_A           81 AGLSNEWMEKLPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRLVREGRWAAG  160 (340)
T ss_dssp             TCBCHHHHHHCSSCCEEEEESSCCTTBCHHHHHHTTCEEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC---
T ss_pred             CCCCHHHHhhCCCCEEEEECCCCccccCHHHHHhCCEEEEECCCCCcchHHHHHHHHHHHHHhChHHHHHHHhcCCcccc
Confidence            4789999999999999999999999999999999999999999999999999999999999999      578899985 


Q ss_pred             -CCccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCC-----------------------------
Q 045521           74 -GYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYK-----------------------------  123 (204)
Q Consensus        74 -~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~-----------------------------  123 (204)
                       .++.+.+|+||||||||+|+||+++|+++++|||+|++|+|++.....+.                             
T Consensus       161 ~~~~~~~~l~gktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li  240 (340)
T 4dgs_A          161 EQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIV  240 (340)
T ss_dssp             ---CCCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCTTSCCEECSSHHHHHHTCSEEEECC----------
T ss_pred             cCcCccccccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCcccccCceecCCHHHHHhcCCEEEEeCCCCHHHHHHh
Confidence             23457899999999999999999999999999999999999865422110                             


Q ss_pred             -------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCcCCCCceEEcccCCCCcHHHHHHHHH
Q 045521          124 -------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATAD  184 (204)
Q Consensus       124 -------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l~~~~nvilTPH~a~~t~~~~~~~~~  184 (204)
                                         |++||++||+++|++|+|+||+||||++||++++|||++|||++|||+|+.|.++++++.+
T Consensus       241 ~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDVf~~EP~~~~~L~~~~nvilTPHia~~t~e~~~~~~~  320 (340)
T 4dgs_A          241 DASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLMPHQGSATVETRMAMGK  320 (340)
T ss_dssp             CHHHHHHTTTTCEEEECSCC--------------CCSSEEEESCCSSSSSCCSHHHHSSSEEECSSCSSCCHHHHHHHHH
T ss_pred             hHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEeCCcCCCCCCccchhhCCCEEEcCcCCcCCHHHHHHHHH
Confidence                               9999999999999999999999999999999888999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCCCCC
Q 045521          185 IVIENLEACFLNKPLLTPVV  204 (204)
Q Consensus       185 ~~~~nl~~~~~g~~~~~~v~  204 (204)
                      .+++|+.+|++|+++.|+||
T Consensus       321 ~~~~nl~~~~~g~~~~~~Vn  340 (340)
T 4dgs_A          321 LVLANLAAHFAGEKAPNTVN  340 (340)
T ss_dssp             HHHHHHHHHHTTSCCTTBC-
T ss_pred             HHHHHHHHHHcCCCCCCCcC
Confidence            99999999999999999997

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=100.00  E-value=6.5e-59  Score=399.68  Aligned_cols=203  Identities=29%  Similarity=0.413  Sum_probs=183.2

Q ss_pred             CCCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCC-
Q 045521            1 VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEM-   73 (204)
Q Consensus         1 t~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~-   73 (204)
                      +++++++|+++|+||+|+++|+|+||||+++|+++||.|+|+||+++.+||||+++++|++.|+      .++++.|.. 
T Consensus        52 ~~i~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~r~~~~~~~~~~~~~~~~~  131 (334)
T 3kb6_A           52 DKLTEELLSKMPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLKRIEDRVKKLNFSQD  131 (334)
T ss_dssp             SCBCHHHHHTCTTCCEEEESSSCCTTBCHHHHHHHTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC
T ss_pred             CCCCHHHHhcCCCCcEEEECCcccchhcHHHHHHCCCEEEECCCcCcHHHHHHHHHHHHHHhhccccccccccccccccc
Confidence            4789999999999999999999999999999999999999999999999999999999999999      456788874 


Q ss_pred             CCccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCC-----CCC-------------------------
Q 045521           74 GYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNT-----KYK-------------------------  123 (204)
Q Consensus        74 ~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~-----~~~-------------------------  123 (204)
                      ....+.+|+||||||||+|+||+++|+++++|||+|++||++.++..     .+.                         
T Consensus       132 ~~~~~~~l~g~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~~~~~~~l~ell~~sDivslh~Plt~~T~~l  211 (334)
T 3kb6_A          132 SEILARELNRLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKREDLKEKGCVYTSLDELLKESDVISLHVPYTKETHHM  211 (334)
T ss_dssp             GGGCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHTTCEECCHHHHHHHCSEEEECCCCCTTTTTC
T ss_pred             cccccceecCcEEEEECcchHHHHHHHhhcccCceeeecCCccchhhhhcCceecCHHHHHhhCCEEEEcCCCChhhccC
Confidence            33457899999999999999999999999999999999998764310     000                         


Q ss_pred             --------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCC----------------CcCCCCceEE
Q 045521          124 --------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPE----------------ELFGLENVVL  167 (204)
Q Consensus       124 --------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~----------------~l~~~~nvil  167 (204)
                                          |++|||+||++||++|+|+||+||||++||++.+                |||++|||++
T Consensus       212 i~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~EPl~~~~~~~~~~~~~~~~~~~~L~~~~nvil  291 (334)
T 3kb6_A          212 INEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVII  291 (334)
T ss_dssp             BCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHHHHHTTGGGGTCCCHHHHHHHHHHTSTTEEE
T ss_pred             cCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCceEEEEeCCCCCCCcccccccccccccccccchhhccCCCEEE
Confidence                                9999999999999999999999999999996421                5889999999


Q ss_pred             cccCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 045521          168 LPHAASGTEETRKATADIVIENLEACFLNKPLLTPV  203 (204)
Q Consensus       168 TPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v  203 (204)
                      |||+|++|.++++++.+.+++|+.+|++|+++...+
T Consensus       292 TPHia~~T~ea~~~~~~~~~~ni~~~l~Ge~~~~~~  327 (334)
T 3kb6_A          292 TPHIAYYTDKSLERIREETVKVVKAFVKGDLEQIKG  327 (334)
T ss_dssp             CCSCTTCBHHHHHHHHHHHHHHHHHHHHTCGGGGGG
T ss_pred             CCchhhChHHHHHHHHHHHHHHHHHHHcCCCCcCCC
Confidence            999999999999999999999999999999765443

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=100.00  E-value=3.1e-57  Score=390.31  Aligned_cols=204  Identities=38%  Similarity=0.551  Sum_probs=187.4

Q ss_pred             CCCCHHHHhcC-CCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCC
Q 045521            1 VGADAELIDSL-PKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEM   73 (204)
Q Consensus         1 t~i~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~   73 (204)
                      +++++++++++ |+||||++.|+|+|+||+++|+++||.|+|+||+++++||||++++||++.|+      .+++|.|.+
T Consensus        81 ~~i~~~~l~~~~~~Lk~I~~~~~G~D~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~  160 (345)
T 4g2n_A           81 EAITAEVIRKLQPGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRMVRSGSWPG  160 (345)
T ss_dssp             SCBCHHHHHHTTTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCC
T ss_pred             CCCCHHHHHhhcCCceEEEEcCCcccccCHHHHHhCCEEEEECCcccchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcc
Confidence            47899999997 79999999999999999999999999999999999999999999999999999      578899984


Q ss_pred             ---CCccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC-----CC-C-C--------------------
Q 045521           74 ---GYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN-----TK-Y-K--------------------  123 (204)
Q Consensus        74 ---~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~-----~~-~-~--------------------  123 (204)
                         ....+.+|+||||||||+|+||+.+|+++++|||+|++|+|++.+.     .. . .                    
T Consensus       161 ~~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~g~~~~~~l~ell~~sDvV~l~~Plt~~  240 (345)
T 4g2n_A          161 WGPTQLLGMGLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPE  240 (345)
T ss_dssp             CCTTTTCBCCCTTCEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHTTCEECSSHHHHHHTCSEEEECSCCCGG
T ss_pred             cCcccccccccCCCEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhhcCCeEeCCHHHHHhhCCEEEEecCCCHH
Confidence               1234789999999999999999999999999999999999975321     00 0 0                    


Q ss_pred             ------------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCcCCCCceEEcccCCCCcHHHH
Q 045521          124 ------------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETR  179 (204)
Q Consensus       124 ------------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l~~~~nvilTPH~a~~t~~~~  179 (204)
                                              |++||++||+++|++|+|+||+||||++||.+++|||++|||++|||+|++|.+++
T Consensus       241 T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~~  320 (345)
T 4g2n_A          241 LKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHETR  320 (345)
T ss_dssp             GTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECCSCTTCBHHHH
T ss_pred             HHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCceEEEecCCCCCCCCCchHHhCCCEEEcCccCcCCHHHH
Confidence                                    99999999999999999999999999999955569999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCCCC
Q 045521          180 KATADIVIENLEACFLNKPLLTPVV  204 (204)
Q Consensus       180 ~~~~~~~~~nl~~~~~g~~~~~~v~  204 (204)
                      +++.+.+++|+.+|++|+++.|+|+
T Consensus       321 ~~~~~~~~~ni~~~l~g~~~~~~V~  345 (345)
T 4g2n_A          321 DAMGWLLIQGIEALNQSDVPDNLIS  345 (345)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCTTBCC
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCCcC
Confidence            9999999999999999999999986

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=100.00  E-value=1.7e-55  Score=386.50  Aligned_cols=204  Identities=30%  Similarity=0.413  Sum_probs=187.9

Q ss_pred             CCCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCCC
Q 045521            1 VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEMG   74 (204)
Q Consensus         1 t~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~~   74 (204)
                      |++++++++++|+||+|++.++|+|+||+++|+++||.|+|+||+++++||||+++++|++.|+      .+++|.|.+.
T Consensus        68 ~~i~~~~l~~~p~Lk~I~~~~~G~d~IDl~~a~~~GI~V~n~p~~n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~  147 (416)
T 3k5p_A           68 TQLTEEIFAAANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKT  147 (416)
T ss_dssp             CCBCHHHHHHCTTCCEEEECSSCCTTBCHHHHHHTTCCEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC
T ss_pred             CCCCHHHHHhCCCcEEEEECccccCccCHHHHHhcCcEEEeCCCcccHHHHHHHHHHHHHHhcccHHHHHhhhccccccc
Confidence            5789999999999999999999999999999999999999999999999999999999999999      5788999863


Q ss_pred             CccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCC----CC---------------------------
Q 045521           75 YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTK----YK---------------------------  123 (204)
Q Consensus        75 ~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~----~~---------------------------  123 (204)
                      ...+.+|+||||||||+|+||+.+|+++++|||+|++||++.+....    +.                           
T Consensus       148 ~~~~~el~gktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~~~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~  227 (416)
T 3k5p_A          148 AIGSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQYGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLIT  227 (416)
T ss_dssp             CTTCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCCBTTBEECSSHHHHHHHCSEEEECCCC-----CCBC
T ss_pred             CCCCccCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhcccCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcC
Confidence            33468999999999999999999999999999999999987542211    00                           


Q ss_pred             ------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCC-----CCcCCCCceEEcccCCCCcHHHHH
Q 045521          124 ------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVP-----EELFGLENVVLLPHAASGTEETRK  180 (204)
Q Consensus       124 ------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-----~~l~~~~nvilTPH~a~~t~~~~~  180 (204)
                                        |++||++||+++|++|+|+||+||||++||+++     +|||++|||++|||+|++|.|+.+
T Consensus       228 ~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~i~gAalDVf~~EP~~~~~~~~~pL~~~~nvilTPHig~~T~ea~~  307 (416)
T 3k5p_A          228 EAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEEAQE  307 (416)
T ss_dssp             HHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEECCCSSCCSSTTSCCCCTTTTCTTEEECCSCTTCCHHHHH
T ss_pred             HHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCccEEEeCCCCCCCCCcccccchhHhcCCCEEECCCCCCCCHHHHH
Confidence                              999999999999999999999999999999865     489999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCCCCCCCC
Q 045521          181 ATADIVIENLEACFLNKPLLTPVV  204 (204)
Q Consensus       181 ~~~~~~~~nl~~~~~g~~~~~~v~  204 (204)
                      ++...+++|+.+|++++.+.+.||
T Consensus       308 ~~~~~~~~nl~~~l~~g~~~~~Vn  331 (416)
T 3k5p_A          308 RIGTEVTRKLVEYSDVGSTVGAVN  331 (416)
T ss_dssp             HHHHHHHHHHHHHHHHCCCTTBSS
T ss_pred             HHHHHHHHHHHHHHhhCCCCceee
Confidence            999999999999999988888886

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=100.00  E-value=6.2e-56  Score=380.69  Aligned_cols=204  Identities=28%  Similarity=0.476  Sum_probs=187.4

Q ss_pred             CCCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCC-
Q 045521            1 VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEM-   73 (204)
Q Consensus         1 t~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~-   73 (204)
                      +++++++++++|+||||++.|+|+|+||+++|+++||.|+|+||+++.+||||++++||++.|+      .+++|.|.+ 
T Consensus        55 ~~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~  134 (330)
T 4e5n_A           55 DRVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGW  134 (330)
T ss_dssp             CCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSC
T ss_pred             CCCCHHHHhhCCCCcEEEECCCcccccCHHHHHhcCcEEEeCCCCCchHHHHHHHHHHHHHHhChHHHHHHHHhCCcccc
Confidence            4689999999999999999999999999999999999999999999999999999999999999      578899973 


Q ss_pred             -CCccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC-------CCCC----------------------
Q 045521           74 -GYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN-------TKYK----------------------  123 (204)
Q Consensus        74 -~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~-------~~~~----------------------  123 (204)
                       ....+.+|+||||||||+|+||+.+|+++++|||+|++|+|+....       ..+.                      
T Consensus       135 ~~~~~~~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t  214 (330)
T 4e5n_A          135 QPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQVACSELFASSDFILLALPLNADT  214 (330)
T ss_dssp             CSCCCCCCSTTCEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTEEECCHHHHHHHCSEEEECCCCSTTT
T ss_pred             CccccCCccCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCceeCCHHHHHhhCCEEEEcCCCCHHH
Confidence             2234789999999999999999999999999999999999986210       0000                      


Q ss_pred             -----------------------cceeCHHHHHHHHHcCCceEEEeeCCCCC-------CCCCC-CcCCCCceEEcccCC
Q 045521          124 -----------------------GALVDESELVSALLEDRLAAAVLDVFEHE-------PQVPE-ELFGLENVVLLPHAA  172 (204)
Q Consensus       124 -----------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~E-------P~~~~-~l~~~~nvilTPH~a  172 (204)
                                             |++||++||+++|++|+|+||+||||++|       |++.+ |||++|||++|||+|
T Consensus       215 ~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~E~~~~~~~Pl~~~~~L~~~~nvilTPHia  294 (330)
T 4e5n_A          215 LHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIG  294 (330)
T ss_dssp             TTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCGGGCTTCTTCCSSCCHHHHTCSSEEECSSCT
T ss_pred             HHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCccEEEecccccccccccCCCCCCCchHHcCCCEEECCcCC
Confidence                                   99999999999999999999999999999       97654 999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 045521          173 SGTEETRKATADIVIENLEACFLNKPLLTPVV  204 (204)
Q Consensus       173 ~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  204 (204)
                      ++|.++.+++.+.+++|+.+|++|+++.|.||
T Consensus       295 ~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn  326 (330)
T 4e5n_A          295 SAVRAVRLEIERCAAQNILQALAGERPINAVN  326 (330)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHTTSCCTTBSS
T ss_pred             CChHHHHHHHHHHHHHHHHHHHcCCCCCCccC
Confidence            99999999999999999999999999999987

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=100.00  E-value=3.9e-55  Score=384.53  Aligned_cols=204  Identities=29%  Similarity=0.392  Sum_probs=178.9

Q ss_pred             CCCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCCC
Q 045521            1 VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEMG   74 (204)
Q Consensus         1 t~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~~   74 (204)
                      |++++++++++|+||+|+++++|+|+||+++|+++||.|+|+|++++.+||||++++||++.|+      .+++|.|.+.
T Consensus        57 ~~~~~~~l~~~~~Lk~I~~~~~G~d~iD~~~a~~~GI~V~n~p~~n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~  136 (404)
T 1sc6_A           57 THLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKL  136 (404)
T ss_dssp             CCBCHHHHHHCSSCCEEEECSSCCTTBCHHHHHHTTCCEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC--
T ss_pred             CCCCHHHHhhCCCCcEEEECCcccCccCHHHHHhCCCEEEecCcccHHHHHHHHHHHHHHHHhChHHHHHHHHcCCcccc
Confidence            4789999999999999999999999999999999999999999999999999999999999999      5788999853


Q ss_pred             CccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCC----C-C--------------------------
Q 045521           75 YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTK----Y-K--------------------------  123 (204)
Q Consensus        75 ~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~----~-~--------------------------  123 (204)
                      ...+.+|+|||+||||+|+||+.+|+++++|||+|++|+|+......    . .                          
T Consensus       137 ~~~~~el~gktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~  216 (404)
T 1sc6_A          137 AAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMG  216 (404)
T ss_dssp             ---CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCCTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBC
T ss_pred             CCCccccCCCEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhccCCceecCCHHHHHhcCCEEEEccCCChHHHHHhh
Confidence            23468999999999999999999999999999999999986543211    0 0                          


Q ss_pred             ------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCC-----CCcCCCCceEEcccCCCCcHHHHH
Q 045521          124 ------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVP-----EELFGLENVVLLPHAASGTEETRK  180 (204)
Q Consensus       124 ------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-----~~l~~~~nvilTPH~a~~t~~~~~  180 (204)
                                        |++||++||+++|++|+|+||+||||++||++.     +|||++|||++|||+|++|.|+.+
T Consensus       217 ~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gA~lDVf~~EP~~~~~~~~~pL~~~~nvilTPHi~~~T~ea~~  296 (404)
T 1sc6_A          217 AKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQE  296 (404)
T ss_dssp             HHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC---------CTTTGGGTTCTTEEEECCCSCCSHHHHH
T ss_pred             HHHHhhcCCCeEEEECCCChHHhHHHHHHHHHcCCccEEEEeecCCCCCCccccccchhhcCCCEEECCCCCCCcHHHHH
Confidence                              999999999999999999999999999999863     489999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCCCCCCCC
Q 045521          181 ATADIVIENLEACFLNKPLLTPVV  204 (204)
Q Consensus       181 ~~~~~~~~nl~~~~~g~~~~~~v~  204 (204)
                      ++...+++|+.+|++|+++.+.||
T Consensus       297 ~~~~~~~~nl~~~l~g~~~~~~vn  320 (404)
T 1sc6_A          297 NIGLEVAGKLIKYSDNGSTLSAVN  320 (404)
T ss_dssp             HHHHHHHHHHHHHHHHCCCTTBSS
T ss_pred             HHHHHHHHHHHHHHcCCCCcceec
Confidence            999999999999999999888886

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=100.00  E-value=3.1e-55  Score=374.97  Aligned_cols=196  Identities=26%  Similarity=0.415  Sum_probs=179.1

Q ss_pred             CHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCCCCcc
Q 045521            4 DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEMGYKL   77 (204)
Q Consensus         4 ~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~~~~~   77 (204)
                      ++++++++|+||||++.|+|+|+||+++++ +||.|+|+||+++.+||||++++||++.|+      .+++|.|.+  ..
T Consensus        58 ~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~-~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~--~~  134 (324)
T 3hg7_A           58 AKPLLAKANKLSWFQSTYAGVDVLLDARCR-RDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQS--HP  134 (324)
T ss_dssp             HGGGGGGCTTCCEEEESSSCCGGGSCTTSC-CSSEEECCCSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCC--CC
T ss_pred             CHHHHhhCCCceEEEECCCCCCccChHHHh-CCEEEEECCCcChHHHHHHHHHHHHHHHhChHHHHHHHhhCCCcC--CC
Confidence            467899999999999999999999999885 499999999999999999999999999999      568899985  24


Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCC----------------------------------
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYK----------------------------------  123 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~----------------------------------  123 (204)
                      +.+|+|+||||||+|+||+.+|+++++|||+|++|+|++++...+.                                  
T Consensus       135 ~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~  214 (324)
T 3hg7_A          135 YQGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTA  214 (324)
T ss_dssp             CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTCSEEECGGGHHHHHHTCSEEEECCCCCSSSTTSBCT
T ss_pred             CcccccceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhhhhcccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHH
Confidence            6799999999999999999999999999999999998764322110                                  


Q ss_pred             -----------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCC-CcCCCCceEEcccCCCCcHHHHHHHHHH
Q 045521          124 -----------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPE-ELFGLENVVLLPHAASGTEETRKATADI  185 (204)
Q Consensus       124 -----------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~-~l~~~~nvilTPH~a~~t~~~~~~~~~~  185 (204)
                                       |++||++||+++|++|+|+||+||||++||++.+ |||++|||++|||+|+.|.+  .++.+.
T Consensus       215 ~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~--~~~~~~  292 (324)
T 3hg7_A          215 SRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYSFP--DDVAQI  292 (324)
T ss_dssp             TTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSSSEEEESCCSSSSCCTTCTTTTCTTEEECCSCSSCCCH--HHHHHH
T ss_pred             HHHhcCCCCcEEEECCCchhhCHHHHHHHHHcCCceEEEeccCCCCCCCCCChhhcCCCEEEeCCCccccHH--HHHHHH
Confidence                             9999999999999999999999999999998765 99999999999999999976  579999


Q ss_pred             HHHHHHHHHcCCCCCCCCC
Q 045521          186 VIENLEACFLNKPLLTPVV  204 (204)
Q Consensus       186 ~~~nl~~~~~g~~~~~~v~  204 (204)
                      +++|+.+|++|+++.|.||
T Consensus       293 ~~~nl~~~~~G~~~~~~V~  311 (324)
T 3hg7_A          293 FVRNYIRFIDGQPLDGKID  311 (324)
T ss_dssp             HHHHHHHHHTTCCCTTBCC
T ss_pred             HHHHHHHHHcCCCCcceEC
Confidence            9999999999999999987

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=100.00  E-value=3.8e-55  Score=374.68  Aligned_cols=199  Identities=25%  Similarity=0.396  Sum_probs=181.3

Q ss_pred             HHHH-hcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh---H----HHhcCCCCCCc
Q 045521            5 AELI-DSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR---F----VRSEDGEMGYK   76 (204)
Q Consensus         5 ~~~l-~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~---~----~~~~~w~~~~~   76 (204)
                      ++++ +++|+||||++.|+|+|+||+++++++||.|+|+||+++.+||||++++||++.|+   +    ++++.|.+.. 
T Consensus        52 ~~~l~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~~W~~~~-  130 (324)
T 3evt_A           52 KTILARPTNQLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGARQWALPM-  130 (324)
T ss_dssp             HHHHHSTTCCCCEEECSSSCCTTSCHHHHHHTTCEEECCTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCSSCSS-
T ss_pred             HHHHHhhCCCceEEEECCccccccCHHHHHHCCcEEEECCCcCchHHHHHHHHHHHHHHhChhHHHHHHHhcCCcccCC-
Confidence            6888 78999999999999999999999999999999999999999999999999999999   3    4568898522 


Q ss_pred             cccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCC---------------------------------
Q 045521           77 LTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYK---------------------------------  123 (204)
Q Consensus        77 ~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~---------------------------------  123 (204)
                      .+.+|+||||||||+|+||+.+|+++++|||+|++|+|+.++...+.                                 
T Consensus       131 ~~~~l~gktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~  210 (324)
T 3evt_A          131 TTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHETVAFTATADALATANFIVNALPLTPTTHHLFS  210 (324)
T ss_dssp             CCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTCSEEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBS
T ss_pred             CCccccCCeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhHhhccccCCHHHHHhhCCEEEEcCCCchHHHHhcC
Confidence            47899999999999999999999999999999999998765322110                                 


Q ss_pred             ------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCC-CcCCCCceEEcccCCCCcHHHHHHHHH
Q 045521          124 ------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPE-ELFGLENVVLLPHAASGTEETRKATAD  184 (204)
Q Consensus       124 ------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~-~l~~~~nvilTPH~a~~t~~~~~~~~~  184 (204)
                                        |++||++||+++|++|+|+||+||||++||++.+ |||++|||++|||+|+.|.++.+++.+
T Consensus       211 ~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~  290 (324)
T 3evt_A          211 TELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHISGQIAHFRATVFP  290 (324)
T ss_dssp             HHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSSSCCTTCGGGGCSSEEECCSCTTCCCCHHHHHHH
T ss_pred             HHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCCCCCCCCCCChhhcCCCEEEcCccccChHHHHHHHHH
Confidence                              9999999999999999999999999999998764 999999999999999999999999999


Q ss_pred             HHHHHHHHHHcC-CCCCCCCC
Q 045521          185 IVIENLEACFLN-KPLLTPVV  204 (204)
Q Consensus       185 ~~~~nl~~~~~g-~~~~~~v~  204 (204)
                      .+++|+.+|++| +++.|.||
T Consensus       291 ~~~~nl~~~l~~~~~~~n~V~  311 (324)
T 3evt_A          291 IFAANFAQFVKDGTLVRNQVD  311 (324)
T ss_dssp             HHHHHHHHHHHHSCCCSCBCC
T ss_pred             HHHHHHHHHHhCCCCCCceEC
Confidence            999999999975 46788886

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=100.00  E-value=4e-55  Score=379.34  Aligned_cols=203  Identities=22%  Similarity=0.308  Sum_probs=184.1

Q ss_pred             CCCCHHHHhcCCCceEEEEC-CCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcC--C
Q 045521            1 VGADAELIDSLPKLEIVATC-SAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSED--G   71 (204)
Q Consensus         1 t~i~~~~l~~~~~Lk~I~~~-~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~--w   71 (204)
                      +++++++++++|+||+|++. ++|+|+||+++|+++||.|+|+||+++.+||||+++++|++.|+      .+++|.  |
T Consensus        84 ~~i~~~~l~~~p~Lk~I~~~~~~G~d~iD~~~a~~~GI~V~n~~~~~~~~vAE~~l~l~L~~~R~~~~~~~~~r~g~~~w  163 (365)
T 4hy3_A           84 PPLSAETLARMPALRSILNVESNLLNNMPYEVLFQRGIHVVTTGQVFAEPVAEIGLGFALALARGIVDADIAFQEGTELW  163 (365)
T ss_dssp             CCCCHHHHTTCTTCCEEECCSSSCCSCSCTTHHHHSCCEEEECGGGGHHHHHHHHHHHHHHHHHTTTHHHHHHHHTCCCC
T ss_pred             CCCCHHHHhhCCCCeEEEEecccccCcccHHHHhcCCeEEEeCCCccchHHHHHHHHHHHHHHhchhHHHHHHHcCCccc
Confidence            47899999999999999975 89999999999999999999999999999999999999999999      467887  5


Q ss_pred             CC-CCccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC----CCC--C---------------------
Q 045521           72 EM-GYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN----TKY--K---------------------  123 (204)
Q Consensus        72 ~~-~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~----~~~--~---------------------  123 (204)
                      .. ....+.+|+||||||||+|+||+.+|+++++|||+|++|+|+.++.    .++  .                     
T Consensus       164 ~~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~Plt~~  243 (365)
T 4hy3_A          164 GGEGNASARLIAGSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPRSMLEENGVEPASLEDVLTKSDFIFVVAAVTSE  243 (365)
T ss_dssp             SSSSTTSCCCSSSSEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSCHHHHHHTTCEECCHHHHHHSCSEEEECSCSSCC
T ss_pred             cccccccccccCCCEEEEecCCcccHHHHHhhhhCCCEEEEECCCCCHHHHhhcCeeeCCHHHHHhcCCEEEEcCcCCHH
Confidence            43 2235789999999999999999999999999999999999875321    000  0                     


Q ss_pred             ------------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCC-CcCCCCceEEcccCCCCcHHH
Q 045521          124 ------------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPE-ELFGLENVVLLPHAASGTEET  178 (204)
Q Consensus       124 ------------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~-~l~~~~nvilTPH~a~~t~~~  178 (204)
                                              |++||++||+++|++|+|+ |+||||++||++.+ |||++|||++|||+|+.|.++
T Consensus       244 T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~-aaLDV~~~EPl~~~~pL~~~~nvilTPHia~~t~e~  322 (365)
T 4hy3_A          244 NKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIV-AASDVYPEEPLPLDHPVRSLKGFIRSAHRAGALDSA  322 (365)
T ss_dssp             ---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSE-EEESCCSSSSCCTTCGGGTCTTEEECCSCSSCCHHH
T ss_pred             HHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCce-EEeeCCCCCCCCCCChhhcCCCEEECCccccCHHHH
Confidence                                    9999999999999999999 99999999998764 999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCCC
Q 045521          179 RKATADIVIENLEACFLNKPLLTPVV  204 (204)
Q Consensus       179 ~~~~~~~~~~nl~~~~~g~~~~~~v~  204 (204)
                      +.++.+.+++||.+|++|+++.++||
T Consensus       323 ~~~~~~~~~~ni~~~~~G~~~~~~vn  348 (365)
T 4hy3_A          323 FKKMGDMVLEDMDLMDRGLPPMRCKR  348 (365)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCSSEE
T ss_pred             HHHHHHHHHHHHHHHHcCCCcccccc
Confidence            99999999999999999999998875

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=100.00  E-value=1.9e-55  Score=380.03  Aligned_cols=202  Identities=23%  Similarity=0.354  Sum_probs=183.3

Q ss_pred             CCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCC-C
Q 045521            2 GADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEM-G   74 (204)
Q Consensus         2 ~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~-~   74 (204)
                      ++++++++++|+||+|++.|+|+||||+++|+++||.|+|+||+++.+||||++++||++.|+      .+++|.|.. .
T Consensus        75 ~~~~~~l~~~p~Lk~i~~~g~G~d~id~~~a~~~gI~V~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~  154 (351)
T 3jtm_A           75 YVTAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAG  154 (351)
T ss_dssp             CBCHHHHHHCSSCCEEEESSSCCTTBCHHHHHHTTCEEEECTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHHH
T ss_pred             CCCHHHHhhCCCCeEEEEeCeeecccCHHHHHhcCeeEEECCCcCchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCcccc
Confidence            489999999999999999999999999999999999999999999999999999999999999      578899984 1


Q ss_pred             -CccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC----------C-CC-------C------------
Q 045521           75 -YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN----------T-KY-------K------------  123 (204)
Q Consensus        75 -~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~----------~-~~-------~------------  123 (204)
                       ...+.+|+||||||||+|+||+.+|+++++|||+|++|+|++.+.          . ..       +            
T Consensus       155 ~~~~~~~l~gktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t  234 (351)
T 3jtm_A          155 IAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKT  234 (351)
T ss_dssp             HHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTTT
T ss_pred             ccCCcccccCCEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHH
Confidence             123678999999999999999999999999999999999875321          0 00       0            


Q ss_pred             -----------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCC-CcCCCCceEEcccCCCCcHHHH
Q 045521          124 -----------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPE-ELFGLENVVLLPHAASGTEETR  179 (204)
Q Consensus       124 -----------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~-~l~~~~nvilTPH~a~~t~~~~  179 (204)
                                             |++||++||+++|++|+|+||+||||++||++.+ |||++|||++|||+|+.|.++.
T Consensus       235 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~pL~~~~nvilTPHia~~t~ea~  314 (351)
T 3jtm_A          235 RGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQ  314 (351)
T ss_dssp             TTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCGGGSHHHH
T ss_pred             HHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHHhCCccEEEeCCCCCCCCCCCChhhcCCCEEECCcCCCCCHHHH
Confidence                                   9999999999999999999999999999998765 9999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCC--CCCCC
Q 045521          180 KATADIVIENLEACFLNKP--LLTPV  203 (204)
Q Consensus       180 ~~~~~~~~~nl~~~~~g~~--~~~~v  203 (204)
                      .++.+.+.+|+.+|++|++  +.|.|
T Consensus       315 ~~~~~~~~~nl~~~~~g~~~~~~~~i  340 (351)
T 3jtm_A          315 LRYAAGTKDMLERYFKGEDFPTENYI  340 (351)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCGGGEE
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCceEE
Confidence            9999999999999999996  55543

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=100.00  E-value=4.2e-55  Score=376.75  Aligned_cols=204  Identities=26%  Similarity=0.326  Sum_probs=181.7

Q ss_pred             CCCCHH-HHhcCC--CceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHH-hcC
Q 045521            1 VGADAE-LIDSLP--KLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVR-SED   70 (204)
Q Consensus         1 t~i~~~-~l~~~~--~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~-~~~   70 (204)
                      ++++++ +++++|  +||+|++.|+|+|+||+++|+++||.|+|+||+++.+||||+++++|++.|+      .++ +|.
T Consensus        55 ~~~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~g~  134 (343)
T 2yq5_A           55 GPVDEEVVYQKLSEYGVKCIGLRIVGFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHD  134 (343)
T ss_dssp             SCBCCHHHHHHHHHTTCCEEEESSSCCTTBCSSTTCC--CEEECCSCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCC
T ss_pred             CCcCHHHHHHhccccCceEEEECceeecccchhHHHhCCEEEEECCCCCcHHHHHHHHHHHHHHHhchHHHHHHHHHcCC
Confidence            478999 999986  6999999999999999999999999999999999999999999999999999      456 776


Q ss_pred             CCC-CCccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCC----CC----------------------
Q 045521           71 GEM-GYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTK----YK----------------------  123 (204)
Q Consensus        71 w~~-~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~----~~----------------------  123 (204)
                      |.. ....+.+|+||||||||+|+||+.+|+++++|||+|++|+|+..+...    +.                      
T Consensus       135 ~~w~~~~~~~~l~gktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~Plt~~t  214 (343)
T 2yq5_A          135 FTWPSNLISNEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPEFEPFLTYTDFDTVLKEADIVSLHTPLFPST  214 (343)
T ss_dssp             CCCCGGGCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGGGTTTCEECCHHHHHHHCSEEEECCCCCTTT
T ss_pred             cccccCCCccccCCCeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhhhhccccccCHHHHHhcCCEEEEcCCCCHHH
Confidence            642 234578999999999999999999999999999999999998653211    10                      


Q ss_pred             -----------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCC--CCCC------------CcCCCCceE
Q 045521          124 -----------------------GALVDESELVSALLEDRLAAAVLDVFEHEP--QVPE------------ELFGLENVV  166 (204)
Q Consensus       124 -----------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP--~~~~------------~l~~~~nvi  166 (204)
                                             |++||++||+++|++|+|+||+||||++||  ++.+            |||++|||+
T Consensus       215 ~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~l~~~~~pL~~~~nvi  294 (343)
T 2yq5_A          215 ENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVV  294 (343)
T ss_dssp             TTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSCEEESCCTTGGGTTTCCSCCTTTSCHHHHHHTTCTTEE
T ss_pred             HHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCCcEEEecccccCCCccccccccccccccchhHHhcCCCEE
Confidence                                   999999999999999999999999999999  3433            799999999


Q ss_pred             EcccCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 045521          167 LLPHAASGTEETRKATADIVIENLEACFLNKPLLTPVV  204 (204)
Q Consensus       167 lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  204 (204)
                      +|||+|++|.++++++.+.+++|+.+|++|+++.|.||
T Consensus       295 lTPHia~~t~ea~~~~~~~~~~ni~~~l~g~~~~~~v~  332 (343)
T 2yq5_A          295 ITPHSAFYTETSIRNMVQICLTDQLTIAKGGRPRSIVN  332 (343)
T ss_dssp             ECSSCTTCBHHHHHHHHHHHHHHHHHHHTTCCCTTBC-
T ss_pred             ECCccccchHHHHHHHHHHHHHHHHHHHcCCCCCceEC
Confidence            99999999999999999999999999999999999886

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=100.00  E-value=2.2e-54  Score=373.65  Aligned_cols=202  Identities=27%  Similarity=0.389  Sum_probs=183.4

Q ss_pred             CCCCHHHHhcCCCceEEEECCCCC----CCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcC
Q 045521            1 VGADAELIDSLPKLEIVATCSAGL----DKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSED   70 (204)
Q Consensus         1 t~i~~~~l~~~~~Lk~I~~~~~G~----d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~   70 (204)
                      +++++++++++|+||+|++.|+|+    |+||+++|+++||.|+|+||+ +.+||||++++||++.|+      .+++|.
T Consensus        59 ~~~~~~~l~~~~~Lk~I~~~g~G~~~~~d~id~~~a~~~gI~V~n~pg~-~~~vAE~al~l~L~~~R~~~~~~~~~~~g~  137 (352)
T 3gg9_A           59 TRVTRQLLDRLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVVLEGKGS-PVAPAELTWALVMAAQRRIPQYVASLKHGA  137 (352)
T ss_dssp             SCBCHHHHTTCTTCCEEEESSCCCCSSSCSBCHHHHHHHTCEEECCCCC-SHHHHHHHHHHHHHHHTTHHHHHHHHHTTC
T ss_pred             CCCCHHHHhhCCCCeEEEEeCcccCCccCcccHHHHHhCCeEEEECCCC-cHHHHHHHHHHHHHHHhhHHHHHHHHHcCC
Confidence            468999999999999999999999    999999999999999999999 999999999999999999      467899


Q ss_pred             CCCCC----------ccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC----CC---C-C---------
Q 045521           71 GEMGY----------KLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN----TK---Y-K---------  123 (204)
Q Consensus        71 w~~~~----------~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~----~~---~-~---------  123 (204)
                      |.+..          ..+.+|+||||||||+|.||+.+|+++++|||+|++|+|+.+..    .+   . .         
T Consensus       138 W~~~~~~~~~~~~~~~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aD  217 (352)
T 3gg9_A          138 WQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSD  217 (352)
T ss_dssp             TTCCCCCCTTSCTTTTSBCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHTTCEECSSHHHHHHHCS
T ss_pred             CCcccccccccccccccCccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCHHHHHhcCceEeCCHHHHHhhCC
Confidence            98521          24789999999999999999999999999999999999864210    00   0 0         


Q ss_pred             -----------------------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCC-CCcCCCCceEE
Q 045521          124 -----------------------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVP-EELFGLENVVL  167 (204)
Q Consensus       124 -----------------------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~l~~~~nvil  167 (204)
                                                         |++||++||+++|++|+|+||+||||++||++. +|||++|||++
T Consensus       218 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvil  297 (352)
T 3gg9_A          218 VLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCIC  297 (352)
T ss_dssp             EEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCSSSCCCSCCGGGGCTTEEE
T ss_pred             EEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEecccCCCCCCCCChhhcCCCEEE
Confidence                                               999999999999999999999999999999875 59999999999


Q ss_pred             cccCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 045521          168 LPHAASGTEETRKATADIVIENLEACFLNKPLLTPVV  204 (204)
Q Consensus       168 TPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  204 (204)
                      |||+|+.|.++.+++.+.+++|+.+|++|+| .|.||
T Consensus       298 TPHia~~t~e~~~~~~~~~~~ni~~~~~G~p-~~~Vn  333 (352)
T 3gg9_A          298 TPHIGYVERESYEMYFGIAFQNILDILQGNV-DSVAN  333 (352)
T ss_dssp             CCSCTTCBHHHHHHHHHHHHHHHHHHHTTCC-TTBSC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHcCCC-CcccC
Confidence            9999999999999999999999999999976 47776

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=100.00  E-value=4.4e-54  Score=369.71  Aligned_cols=204  Identities=25%  Similarity=0.349  Sum_probs=184.2

Q ss_pred             CCCCHHHHhcCCC--ceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCC
Q 045521            1 VGADAELIDSLPK--LEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGE   72 (204)
Q Consensus         1 t~i~~~~l~~~~~--Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~   72 (204)
                      +++++++++++|+  ||||++.|+|+|+||+++|+++||.|+|+||+++++||||++++||++.|+      .+++|.|.
T Consensus        56 ~~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~  135 (333)
T 1j4a_A           56 LDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLR  135 (333)
T ss_dssp             SCBCHHHHHHHHHTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCC
T ss_pred             CCCCHHHHHhccccCCeEEEECCcccccccHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCc
Confidence            3689999999988  999999999999999999999999999999999999999999999999999      46788886


Q ss_pred             CCCccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC-------C-CCC---------------------
Q 045521           73 MGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN-------T-KYK---------------------  123 (204)
Q Consensus        73 ~~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~-------~-~~~---------------------  123 (204)
                      .....+.+++|+||||||+|+||+.+|+++++|||+|++|+|+..+.       . ...                     
T Consensus       136 ~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~p~~~~t~~  215 (333)
T 1j4a_A          136 WAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVH  215 (333)
T ss_dssp             CTTCCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHTTCBCSCHHHHHHHCSEEEECSCCCGGGTT
T ss_pred             cCCcccccCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchhHHhhCeecCCHHHHHhhCCEEEEcCCCcHHHHH
Confidence            32234679999999999999999999999999999999999876421       0 100                     


Q ss_pred             ---------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCC--CC--------C----CcCCCCceEEc
Q 045521          124 ---------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQ--VP--------E----ELFGLENVVLL  168 (204)
Q Consensus       124 ---------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~--~~--------~----~l~~~~nvilT  168 (204)
                                           |++||++||+++|++|+|+||+||||++||.  ++        +    |||++|||++|
T Consensus       216 li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~l~~~~~~~~~~~p~~~~L~~~~nvilT  295 (333)
T 1j4a_A          216 MINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVT  295 (333)
T ss_dssp             CBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEEC
T ss_pred             HHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCccccccccccCCccchhhHHhCCCEEEC
Confidence                                 9999999999999999999999999999993  22        2    49999999999


Q ss_pred             ccCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 045521          169 PHAASGTEETRKATADIVIENLEACFLNKPLLTPVV  204 (204)
Q Consensus       169 PH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  204 (204)
                      ||+|++|.++.+++.+.+++|+.+|++|+++.|.||
T Consensus       296 PHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  331 (333)
T 1j4a_A          296 PKTAFYTTHAVRNMVVKAFDNNLELVEGKEAETPVK  331 (333)
T ss_dssp             SSCTTCBHHHHHHHHHHHHHHHHHHHTTCCCSSBCC
T ss_pred             CccccCHHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Confidence            999999999999999999999999999999999886

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=5.1e-54  Score=369.32  Aligned_cols=204  Identities=26%  Similarity=0.384  Sum_probs=184.2

Q ss_pred             CCCCHHHHhcCCC--ceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCC
Q 045521            1 VGADAELIDSLPK--LEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGE   72 (204)
Q Consensus         1 t~i~~~~l~~~~~--Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~   72 (204)
                      +++++++++++|+  ||||++.++|+|+||+++|+++||.|+|+||+++.+||||++++||++.|+      .+++|.|.
T Consensus        54 ~~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~  133 (333)
T 1dxy_A           54 TPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYE  133 (333)
T ss_dssp             SCBCHHHHHHHHHTTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHH
T ss_pred             CCCCHHHHHhCcccCceEEEEcCcccCccCHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHhhhHHHHHHHHHcCCcc
Confidence            3689999999998  999999999999999999999999999999999999999999999999999      56788884


Q ss_pred             C-CCccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCC----CCC------------------------
Q 045521           73 M-GYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNT----KYK------------------------  123 (204)
Q Consensus        73 ~-~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~----~~~------------------------  123 (204)
                      . ....+.+|+|+||||||+|+||+.+|+++++|||+|++|+|+..+..    .+.                        
T Consensus       134 ~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~P~~~~t~~  213 (333)
T 1dxy_A          134 KAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTH  213 (333)
T ss_dssp             HHTCCCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSCCTTCEECCHHHHHHHCSEEEECCCCCGGGTT
T ss_pred             cccCCCccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchhhHhccccCCHHHHHhcCCEEEEcCCCchhHHH
Confidence            2 12346799999999999999999999999999999999998764321    000                        


Q ss_pred             ---------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCC-----------CC---CCcCCCCceEEc
Q 045521          124 ---------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQ-----------VP---EELFGLENVVLL  168 (204)
Q Consensus       124 ---------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~-----------~~---~~l~~~~nvilT  168 (204)
                                           |++||++||+++|++|+|+||+||||++||+           +.   +|||++|||++|
T Consensus       214 li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~pL~~~~nvi~T  293 (333)
T 1dxy_A          214 IINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLS  293 (333)
T ss_dssp             SBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEEC
T ss_pred             HhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCccEEEEecCCCCCCcccccccccccCccchhHHhcCCCEEEC
Confidence                                 9999999999999999999999999999983           22   379999999999


Q ss_pred             ccCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 045521          169 PHAASGTEETRKATADIVIENLEACFLNKPLLTPVV  204 (204)
Q Consensus       169 PH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  204 (204)
                      ||+|++|.++..++.+.+++|+.+|++|+++.|.||
T Consensus       294 PHia~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~v~  329 (333)
T 1dxy_A          294 PHIAYYTETAVHNMVYFSLQHLVDFLTKGETSTEVT  329 (333)
T ss_dssp             SSCTTCSHHHHHHHHHHHHHHHHHHHHHSCCTTEEC
T ss_pred             CccccChHHHHHHHHHHHHHHHHHHHcCCCCCceeC
Confidence            999999999999999999999999999999998876

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=100.00  E-value=1.3e-53  Score=366.61  Aligned_cols=204  Identities=24%  Similarity=0.332  Sum_probs=184.5

Q ss_pred             CCCCHHHHhcCCC--ceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCC
Q 045521            1 VGADAELIDSLPK--LEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGE   72 (204)
Q Consensus         1 t~i~~~~l~~~~~--Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~   72 (204)
                      +++++++++++|+  ||+|++.|+|+|+||+++++++||.|+|+||+++.+||||++++||++.|+      .+++|.|.
T Consensus        55 ~~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~  134 (331)
T 1xdw_A           55 CFANKQNLDIYKKLGVKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFK  134 (331)
T ss_dssp             CCBCHHHHHHHHHHTCCEEEESSSCCTTBCHHHHHHTTCCEECCCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCC
T ss_pred             CCCCHHHHhhCcccCceEEEEccccccccCHHHHHhCCcEEEeCCCCCcHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCc
Confidence            3689999999998  999999999999999999999999999999999999999999999999998      46778885


Q ss_pred             C-CCccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCC----CCC------------------------
Q 045521           73 M-GYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNT----KYK------------------------  123 (204)
Q Consensus        73 ~-~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~----~~~------------------------  123 (204)
                      . ....+.++.|+||||||+|+||+.+|+++++|||+|++|+|+..+..    .+.                        
T Consensus       135 ~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~p~t~~t~~  214 (331)
T 1xdw_A          135 VDAFMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKGIEDYCTQVSLDEVLEKSDIITIHAPYIKENGA  214 (331)
T ss_dssp             CCSTTCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSCTTTCEECCHHHHHHHCSEEEECCCCCTTTCC
T ss_pred             cccCcCccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHHHHhccccCCHHHHHhhCCEEEEecCCchHHHH
Confidence            2 22346789999999999999999999999999999999998764321    000                        


Q ss_pred             ---------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCC--CC--------C----CcCCC-CceEE
Q 045521          124 ---------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQ--VP--------E----ELFGL-ENVVL  167 (204)
Q Consensus       124 ---------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~--~~--------~----~l~~~-~nvil  167 (204)
                                           |++||++||+++|++|+|+||+||||++||+  +.        +    |||++ |||++
T Consensus       215 li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~~nvil  294 (331)
T 1xdw_A          215 VVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLI  294 (331)
T ss_dssp             SBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTGGGTTTCCCTTSCCSSHHHHHHHHTTTTEEE
T ss_pred             HhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHHhCCceEEEEecCCCCCCcccccccccccCccchHHHHhCCCCEEE
Confidence                                 9999999999999999999999999999994  21        2    69999 99999


Q ss_pred             cccCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 045521          168 LPHAASGTEETRKATADIVIENLEACFLNKPLLTPVV  204 (204)
Q Consensus       168 TPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  204 (204)
                      |||+|++|.++..++.+.+++|+.+|++|+++.|.||
T Consensus       295 TPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  331 (331)
T 1xdw_A          295 TPHLGSYTDEAVKNMVEVSYQNLKDLAETGDCPNKIK  331 (331)
T ss_dssp             CCSCTTCSHHHHHHHHHHHHHHHHHHHHHSCCTTBCC
T ss_pred             cCccccChHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence            9999999999999999999999999999999999986

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=100.00  E-value=9.5e-53  Score=361.24  Aligned_cols=204  Identities=73%  Similarity=1.078  Sum_probs=188.9

Q ss_pred             CCCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCC-
Q 045521            1 VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEM-   73 (204)
Q Consensus         1 t~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~-   73 (204)
                      +++++++++++|+||||++.++|+|+||+++|+++||.|+|+||+++.+||||++++||++.|+      .+++|.|.+ 
T Consensus        75 ~~~~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~  154 (333)
T 3ba1_A           75 AGADAELIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWKFG  154 (333)
T ss_dssp             SCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHHTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTGGGGC
T ss_pred             CCCCHHHHhhCCCCcEEEEcCccccccCHHHHHhCCcEEEECCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcc
Confidence            3689999999999999999999999999999999999999999999999999999999999999      578899974 


Q ss_pred             CCccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCC------------------------------
Q 045521           74 GYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYK------------------------------  123 (204)
Q Consensus        74 ~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~------------------------------  123 (204)
                      ....+.+|+|+||||||+|+||+.+|+++++|||+|++++|+.....++.                              
T Consensus       155 ~~~~~~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~  234 (333)
T 3ba1_A          155 DFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNTNYTYYGSVVELASNSDILVVACPLTPETTHIIN  234 (333)
T ss_dssp             CCCCCCCCTTCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTTCCSEEESCHHHHHHTCSEEEECSCCCGGGTTCBC
T ss_pred             ccccccccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhccCceecCCHHHHHhcCCEEEEecCCChHHHHHhh
Confidence            23347799999999999999999999999999999999998764321110                              


Q ss_pred             ------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCcCCCCceEEcccCCCCcHHHHHHHHHH
Q 045521          124 ------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATADI  185 (204)
Q Consensus       124 ------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l~~~~nvilTPH~a~~t~~~~~~~~~~  185 (204)
                                        |.++|+++|.++|++|+++||++|||++||++.+|||++|||++|||+|+.|.++..++.+.
T Consensus       235 ~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~L~~~~nviltPH~~~~t~e~~~~~~~~  314 (333)
T 3ba1_A          235 REVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADL  314 (333)
T ss_dssp             HHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCCTTTTCCCGGGGGCTTEEECSSCTTCSHHHHHHHHHH
T ss_pred             HHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecCCCCCCCcchhhcCCCEEECCcCCCCCHHHHHHHHHH
Confidence                              99999999999999999999999999999987789999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCC
Q 045521          186 VIENLEACFLNKPLLTPVV  204 (204)
Q Consensus       186 ~~~nl~~~~~g~~~~~~v~  204 (204)
                      +++|+.+|++|+++.|+||
T Consensus       315 ~~~nl~~~~~g~~~~~~Vn  333 (333)
T 3ba1_A          315 VVGNLEAHFSGKPLLTPVV  333 (333)
T ss_dssp             HHHHHHHHHHTCCCSSBCC
T ss_pred             HHHHHHHHHcCCCCCCCCC
Confidence            9999999999999999987

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=100.00  E-value=3.6e-53  Score=361.30  Aligned_cols=197  Identities=26%  Similarity=0.326  Sum_probs=177.2

Q ss_pred             CCHHHHhcCCCceEEEECCCCCCCC-C-hhh---HhhCCcEEEeCCCCC-chhHHHHHHHHHHHHHhh------HHHhcC
Q 045521            3 ADAELIDSLPKLEIVATCSAGLDKI-D-LVK---CKEKGIQVTNTPDVL-TDDVADAAIGLTLAVLRR------FVRSED   70 (204)
Q Consensus         3 i~~~~l~~~~~Lk~I~~~~~G~d~i-d-~~~---~~~~gI~v~n~~~~~-~~~vAE~~l~~~L~~~R~------~~~~~~   70 (204)
                      .+++++++ |+||||++.|+|+|+| | +++   +.++||.|+|++++. +.+||||+++++|++.|+      .+++|.
T Consensus        50 ~~~~~l~~-~~Lk~I~~~~aG~d~i~d~~~a~~~~~~~gi~v~~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~  128 (315)
T 3pp8_A           50 PPVEMLAG-RRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDYQALKNQAL  128 (315)
T ss_dssp             CCHHHHTT-CCCSEEEESSSCCHHHHHHHHHCTTSSCTTSCEEEC--CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTC
T ss_pred             CCHHHhCC-CCceEEEECCEecccccchhhhhhhhhcCCCEEEEcCCCCccHHHHHHHHHHHHHHHhCChHHHHHHHhcc
Confidence            57899999 9999999999999999 7 886   788999999998764 799999999999999999      467899


Q ss_pred             CCCCCccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCC---------------------------
Q 045521           71 GEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYK---------------------------  123 (204)
Q Consensus        71 w~~~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~---------------------------  123 (204)
                      |.+.  .+.+|+||||||||+|+||+.+|+++++|||+|++|+|+++......                           
T Consensus       129 W~~~--~~~~l~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~  206 (315)
T 3pp8_A          129 WKPL--PEYTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQ  206 (315)
T ss_dssp             CCCC--CCCCSTTCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTCEEEESHHHHHHHHHTCSEEEECCCCCGG
T ss_pred             cCCC--CCCCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhhhhhcccCCHHHHHhhCCEEEEecCCchh
Confidence            9852  46789999999999999999999999999999999998765321110                           


Q ss_pred             ------------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCC-CcCCCCceEEcccCCCCcHHH
Q 045521          124 ------------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPE-ELFGLENVVLLPHAASGTEET  178 (204)
Q Consensus       124 ------------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~-~l~~~~nvilTPH~a~~t~~~  178 (204)
                                              |++||++||++||++|+|+||+||||++||++.+ |||++|||++|||+|+.|.+ 
T Consensus       207 t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~-  285 (315)
T 3pp8_A          207 TVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAAVTRP-  285 (315)
T ss_dssp             GTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGGCTTEEECSSCSSCCCH-
T ss_pred             hhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhCCccEEEcCCCCCCCCCCCChhhcCCCEEECCCCCcccHH-
Confidence                                    9999999999999999999999999999998764 99999999999999999986 


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCCC
Q 045521          179 RKATADIVIENLEACFLNKPLLTPVV  204 (204)
Q Consensus       179 ~~~~~~~~~~nl~~~~~g~~~~~~v~  204 (204)
                       .++.+.+++|+.+|++|+++.|.||
T Consensus       286 -~~~~~~~~~ni~~~~~G~~~~~~V~  310 (315)
T 3pp8_A          286 -AEAIDYISRTITQLEKGEPVTGQVD  310 (315)
T ss_dssp             -HHHHHHHHHHHHHHHHTCCCCCBCC
T ss_pred             -HHHHHHHHHHHHHHHcCCCCCceEC
Confidence             5899999999999999999999987

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=100.00  E-value=3.4e-53  Score=370.39  Aligned_cols=202  Identities=23%  Similarity=0.330  Sum_probs=184.3

Q ss_pred             CCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCC-C
Q 045521            2 GADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEM-G   74 (204)
Q Consensus         2 ~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~-~   74 (204)
                      ++++++++++|+||||++.++|+||||+++|+++||.|+|+|++++.+||||++++||++.|+      .+++|.|.. .
T Consensus       102 ~i~~~~l~~~p~Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~~g~~~~~VAE~al~liL~~~R~~~~~~~~~~~g~W~~~~  181 (393)
T 2nac_A          102 YLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIAD  181 (393)
T ss_dssp             CBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTCEEEECTTTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHH
T ss_pred             CCCHHHHhhCCCCcEEEEcCccccccCHHHHhcCCEEEEeCCCcccHHHHHHHHHHHHHHHhccHHHHHHHHcCCCCccc
Confidence            689999999999999999999999999999999999999999999999999999999999998      468899973 1


Q ss_pred             -CccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC-----------CCCC-------------------
Q 045521           75 -YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN-----------TKYK-------------------  123 (204)
Q Consensus        75 -~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~-----------~~~~-------------------  123 (204)
                       ...+.+|+|+||||||+|+||+.+|+++++|||+|++++|+..+.           ....                   
T Consensus       182 ~~~~~~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~~~l~ell~~aDvV~l~~Plt~~t  261 (393)
T 2nac_A          182 CVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPET  261 (393)
T ss_dssp             HHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTT
T ss_pred             cccCCccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCceecCCHHHHHhcCCEEEEecCCchHH
Confidence             123678999999999999999999999999999999999875321           0000                   


Q ss_pred             -----------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCC-CCcCCCCceEEcccCCCCcHHHH
Q 045521          124 -----------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVP-EELFGLENVVLLPHAASGTEETR  179 (204)
Q Consensus       124 -----------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~l~~~~nvilTPH~a~~t~~~~  179 (204)
                                             |++||++||+++|++|+|+||+||||++||++. +|||++|||++|||+|+.|.++.
T Consensus       262 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~pL~~~~nvilTPHia~~T~e~~  341 (393)
T 2nac_A          262 EHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQ  341 (393)
T ss_dssp             TTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCTTCSHHHH
T ss_pred             HHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcCCeeEEEEEecCCCCCCCCChhHcCCCEEECCCCCcCcHHHH
Confidence                                   999999999999999999999999999999875 49999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCCC
Q 045521          180 KATADIVIENLEACFLNKPLLTPV  203 (204)
Q Consensus       180 ~~~~~~~~~nl~~~~~g~~~~~~v  203 (204)
                      .++.+.+++|+++|++|+++.|.|
T Consensus       342 ~~~~~~~~~nl~~~~~G~~~~~~~  365 (393)
T 2nac_A          342 ARYAAGTREILECFFEGRPIRDEY  365 (393)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCGGG
T ss_pred             HHHHHHHHHHHHHHHcCCCCccee
Confidence            999999999999999999998865

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.3e-53  Score=365.27  Aligned_cols=201  Identities=30%  Similarity=0.459  Sum_probs=178.2

Q ss_pred             CCCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCCC
Q 045521            1 VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEMG   74 (204)
Q Consensus         1 t~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~~   74 (204)
                      +++++++++++|+||||++.++|+|+||+++|+++||.|+|+||+++.+||||++++||++.|+      .+++|.|.+.
T Consensus        77 ~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~  156 (335)
T 2g76_A           77 TKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERK  156 (335)
T ss_dssp             SCBCHHHHHHCSSCCEEEESSSSCTTBCHHHHHHHTCEEECCSSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCTG
T ss_pred             CCCCHHHHhhCCCCcEEEECCCCcchhChHHHHhCCeEEEECCCccchHHHHHHHHHHHHHHhchHHHHHHHHcCCCCcc
Confidence            3689999999999999999999999999999999999999999999999999999999999999      5788999752


Q ss_pred             CccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC----CC--C-C------------------------
Q 045521           75 YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN----TK--Y-K------------------------  123 (204)
Q Consensus        75 ~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~----~~--~-~------------------------  123 (204)
                      ...+.+|+|+||||||+|.||+.+|+++++|||+|++|+|+..+.    .+  + .                        
T Consensus       157 ~~~~~~l~g~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~l  236 (335)
T 2g76_A          157 KFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGL  236 (335)
T ss_dssp             GGCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCHHHHHHTTCEECCHHHHGGGCSEEEECCCCCTTTTTS
T ss_pred             CCCCcCCCcCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchhhhhhcCceeCCHHHHHhcCCEEEEecCCCHHHHHh
Confidence            234679999999999999999999999999999999999865321    00  0 0                        


Q ss_pred             --------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCcCCCCceEEcccCCCCcHHHHHHHH
Q 045521          124 --------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATA  183 (204)
Q Consensus       124 --------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l~~~~nvilTPH~a~~t~~~~~~~~  183 (204)
                                          |++||+++|+++|++|+|+||+||||++||.+++|||++||+++|||++++|.++.+++.
T Consensus       237 i~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~L~~~~nvilTPH~~~~t~e~~~~~~  316 (335)
T 2g76_A          237 LNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRCG  316 (335)
T ss_dssp             BCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCSCCHHHHSTTEEECSSCTTCBHHHHHHHH
T ss_pred             hCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHhCCccEEEEeecCCCCCCCchHHhCCCEEECCcCCCCCHHHHHHHH
Confidence                                999999999999999999999999999999766799999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCC
Q 045521          184 DIVIENLEACFLNKPLLT  201 (204)
Q Consensus       184 ~~~~~nl~~~~~g~~~~~  201 (204)
                      +.+++|+.+|++|+++.|
T Consensus       317 ~~~~~nl~~~~~g~~~~n  334 (335)
T 2g76_A          317 EEIAVQFVDMVKGKSLTG  334 (335)
T ss_dssp             HHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHcCCCCCC
Confidence            999999999999999876

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=100.00  E-value=1.2e-51  Score=351.61  Aligned_cols=203  Identities=42%  Similarity=0.626  Sum_probs=185.0

Q ss_pred             CCCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCC-
Q 045521            1 VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEM-   73 (204)
Q Consensus         1 t~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~-   73 (204)
                      +++++++++++|+||||++.|+|+|+||+++++++||.|+|+||+++.+||||++++||++.|+      .+++|.|.+ 
T Consensus        53 ~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~  132 (311)
T 2cuk_A           53 DRIDAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAW  132 (311)
T ss_dssp             SCBCHHHHHHSTTCCEEECSSSCCTTBCHHHHHTTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC
T ss_pred             CCCCHHHHhhCCCCeEEEECCcCccccCHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCcc
Confidence            3689999999999999999999999999999999999999999999999999999999999999      578899963 


Q ss_pred             C--CccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCC-CCC---------------------------
Q 045521           74 G--YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNT-KYK---------------------------  123 (204)
Q Consensus        74 ~--~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~-~~~---------------------------  123 (204)
                      .  ...+.++.|+||||||+|+||+.+|+++++|||+|++++|+..+.. .+.                           
T Consensus       133 ~~~~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~  212 (311)
T 2cuk_A          133 HPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLPYPFLSLEELLKEADVVSLHTPLTPETHRLLN  212 (311)
T ss_dssp             CTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSSSCBCCHHHHHHHCSEEEECCCCCTTTTTCBC
T ss_pred             ccccccCcCCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccccccCCHHHHHhhCCEEEEeCCCChHHHhhcC
Confidence            1  1246799999999999999999999999999999999998764311 010                           


Q ss_pred             ------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCC-CCcCCCCceEEcccCCCCcHHHHHHHHH
Q 045521          124 ------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVP-EELFGLENVVLLPHAASGTEETRKATAD  184 (204)
Q Consensus       124 ------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~l~~~~nvilTPH~a~~t~~~~~~~~~  184 (204)
                                        |.++|+++|.++|+ |+|+||++|||++||++. +|||++||+++|||+++.|.++..++.+
T Consensus       213 ~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~-g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~~~  291 (311)
T 2cuk_A          213 RERLFAMKRGAILLNTARGALVDTEALVEALR-GHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAE  291 (311)
T ss_dssp             HHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT-TTSSEEEESSCSSSSCCTTSGGGGCTTEEECCSCTTCBHHHHHHHHH
T ss_pred             HHHHhhCCCCcEEEECCCCCccCHHHHHHHHh-CcCCEEEEeeCCCCCCCCCChhhhCCCEEECCcCCCCCHHHHHHHHH
Confidence                              99999999999999 999999999999999765 5999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCCCCC
Q 045521          185 IVIENLEACFLNKPLLTPVV  204 (204)
Q Consensus       185 ~~~~nl~~~~~g~~~~~~v~  204 (204)
                      .+++|+.+|++|+++.|.|.
T Consensus       292 ~~~~nl~~~~~g~~~~~~v~  311 (311)
T 2cuk_A          292 VAVENLLAVLEGREPPNPVV  311 (311)
T ss_dssp             HHHHHHHHHHTTCCCSSBCC
T ss_pred             HHHHHHHHHHcCCCCCCccC
Confidence            99999999999999988773

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=100.00  E-value=4.9e-53  Score=366.97  Aligned_cols=197  Identities=25%  Similarity=0.305  Sum_probs=179.2

Q ss_pred             CCCHHHHhcCCCceEEEECCCCCCCCChhhHhhC--CcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCC
Q 045521            2 GADAELIDSLPKLEIVATCSAGLDKIDLVKCKEK--GIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEM   73 (204)
Q Consensus         2 ~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~--gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~   73 (204)
                      ++++++++++|+||||++.++|+|+||+++|+++  ||.|+|+||+++.+||||++++||++.|+      .+++|.|..
T Consensus        73 ~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~~~gI~V~n~pg~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~  152 (364)
T 2j6i_A           73 YITKERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEV  152 (364)
T ss_dssp             CBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHHTCCCEEEECTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCH
T ss_pred             CCCHHHHhhCCCCeEEEECCcccccccHHHHHhcCCCEEEEECCCcCcHHHHHHHHHHHHHHHhChHHHHHHHHhCCCCc
Confidence            4789999999999999999999999999999999  99999999999999999999999999999      578899973


Q ss_pred             -CC-ccccccCCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcCCCCCC-----CC---C-C------------------
Q 045521           74 -GY-KLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSRAEKPN-----TK---Y-K------------------  123 (204)
Q Consensus        74 -~~-~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r~~~~~-----~~---~-~------------------  123 (204)
                       .. ..+.+|+|+||||||+|+||+.+|+++++|||+ |++++|+..+.     .+   . .                  
T Consensus       153 ~~~~~~~~~l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t  232 (364)
T 2j6i_A          153 AAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLH  232 (364)
T ss_dssp             HHHHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCS
T ss_pred             CcccCCcccCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCC
Confidence             11 246799999999999999999999999999997 99999865211     00   0 0                  


Q ss_pred             --------------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCC-CCcCCC--C---ceEEcccC
Q 045521          124 --------------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVP-EELFGL--E---NVVLLPHA  171 (204)
Q Consensus       124 --------------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~l~~~--~---nvilTPH~  171 (204)
                                                |++||++||+++|++|+|+||+||||++||++. +|||.+  |   ||++|||+
T Consensus       233 ~~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~g~i~gA~LDVf~~EP~~~~~pL~~~~~~~~~nvilTPHi  312 (364)
T 2j6i_A          233 AGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHY  312 (364)
T ss_dssp             TTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCHHHHCCCTTSCCEEECCSC
T ss_pred             hHHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHHHcCCCcEEEEecCCCCCCCCCChHHhccCCccCcEEECCcc
Confidence                                      999999999999999999999999999999876 499999  9   99999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 045521          172 ASGTEETRKATADIVIENLEACFLNKP  198 (204)
Q Consensus       172 a~~t~~~~~~~~~~~~~nl~~~~~g~~  198 (204)
                      |+.|.++..++.+.+++|+.+|++|++
T Consensus       313 a~~t~e~~~~~~~~~~~nl~~~~~g~~  339 (364)
T 2j6i_A          313 SGTTLDAQTRYAQGTVNILESFFTGKF  339 (364)
T ss_dssp             GGGSHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CcCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence            999999999999999999999999993

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=100.00  E-value=1.4e-51  Score=351.49  Aligned_cols=196  Identities=27%  Similarity=0.408  Sum_probs=182.0

Q ss_pred             CCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCCCC
Q 045521            2 GADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEMGY   75 (204)
Q Consensus         2 ~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~~~   75 (204)
                      ++++++++++|+||||++.|+|+|++|+++++++||.|+|+||+++.+||||++++||++.|+      .+++|.|..  
T Consensus        57 ~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~--  134 (313)
T 2ekl_A           57 KVTKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFKK--  134 (313)
T ss_dssp             CBCHHHHHHCTTCCEEEECSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCC--
T ss_pred             CCCHHHHhhCCCCeEEEEcCCCCCccCHHHHHhCCeEEEeCCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCC--
Confidence            689999999999999999999999999999999999999999999999999999999999999      578899963  


Q ss_pred             ccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC----CC--C-C-------------------------
Q 045521           76 KLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN----TK--Y-K-------------------------  123 (204)
Q Consensus        76 ~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~----~~--~-~-------------------------  123 (204)
                      ..+.++.|+||||||+|+||+.+|+++++|||+|++++|+..+.    .+  + .                         
T Consensus       135 ~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvVvl~~P~~~~t~~li  214 (313)
T 2ekl_A          135 IEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREKAEKINAKAVSLEELLKNSDVISLHVTVSKDAKPII  214 (313)
T ss_dssp             CCCCCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCCTTSCCSB
T ss_pred             CCCCCCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchhHHHhcCceecCHHHHHhhCCEEEEeccCChHHHHhh
Confidence            34678999999999999999999999999999999999876421    00  0 0                         


Q ss_pred             -------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCC---CcCCCCceEEcccCCCCcHHHHHH
Q 045521          124 -------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPE---ELFGLENVVLLPHAASGTEETRKA  181 (204)
Q Consensus       124 -------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~---~l~~~~nvilTPH~a~~t~~~~~~  181 (204)
                                         |+++|+++|.++|++|+|+||+||||++||++++   |||++|||++|||++++|.++.++
T Consensus       215 ~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~~~L~~~~nviltPH~~~~t~~~~~~  294 (313)
T 2ekl_A          215 DYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKR  294 (313)
T ss_dssp             CHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCEEEEEESCCSSSSCCSHHHHHHHHSTTEEECCSCTTCSHHHHHH
T ss_pred             CHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCCcEEEEecCCCCCCCCcccchHhhCCCEEECCccCcCcHHHHHH
Confidence                               9999999999999999999999999999999887   999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCC
Q 045521          182 TADIVIENLEACFLNKPL  199 (204)
Q Consensus       182 ~~~~~~~nl~~~~~g~~~  199 (204)
                      +.+.+++|+.+|++|+++
T Consensus       295 ~~~~~~~n~~~~~~g~~l  312 (313)
T 2ekl_A          295 VAEMTTQNLLNAMKELGM  312 (313)
T ss_dssp             HHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHcCCCC
Confidence            999999999999999986

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=100.00  E-value=2.3e-51  Score=349.24  Aligned_cols=195  Identities=36%  Similarity=0.538  Sum_probs=178.9

Q ss_pred             CCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCCCC
Q 045521            2 GADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEMGY   75 (204)
Q Consensus         2 ~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~~~   75 (204)
                      ++++++++++|+||||++.++|+|+||+++++++||.|+|+||+++.+||||++++||++.|+      .+++|.|.+..
T Consensus        55 ~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~  134 (307)
T 1wwk_A           55 KVTRRVIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWAKKE  134 (307)
T ss_dssp             CBCHHHHTTCTTCCEEEESSSCCTTBCHHHHHHHTCEEECCGGGGHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCTTT
T ss_pred             CCCHHHHhhCCCCeEEEECCccccccCHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccC
Confidence            589999999999999999999999999999999999999999999999999999999999999      56789997522


Q ss_pred             ccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC----CC--C-C-------------------------
Q 045521           76 KLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN----TK--Y-K-------------------------  123 (204)
Q Consensus        76 ~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~----~~--~-~-------------------------  123 (204)
                      ..+.+|.|+||||||+|+||+.+|+++++|||+|++++|+..+.    .+  + .                         
T Consensus       135 ~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~p~~~~t~~li  214 (307)
T 1wwk_A          135 AMGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNEERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLI  214 (307)
T ss_dssp             CCBCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCSTTTTTCB
T ss_pred             cCCcccCCceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCChhhHhhcCccccCHHHHHhhCCEEEEecCCChHHhhhc
Confidence            34679999999999999999999999999999999999876421    00  0 0                         


Q ss_pred             -------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCC-CCcCCCCceEEcccCCCCcHHHHHHHH
Q 045521          124 -------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVP-EELFGLENVVLLPHAASGTEETRKATA  183 (204)
Q Consensus       124 -------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~l~~~~nvilTPH~a~~t~~~~~~~~  183 (204)
                                         |++||+++|.++|++|+|+||++|||++||++. +|||++||+++|||++++|.++..++.
T Consensus       215 ~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~~  294 (307)
T 1wwk_A          215 NEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAG  294 (307)
T ss_dssp             CHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECSSCTTCBHHHHHHHH
T ss_pred             CHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEecCCCCCCCCCChHHhCCCEEECCccccCcHHHHHHHH
Confidence                               999999999999999999999999999999854 599999999999999999999999999


Q ss_pred             HHHHHHHHHHHcC
Q 045521          184 DIVIENLEACFLN  196 (204)
Q Consensus       184 ~~~~~nl~~~~~g  196 (204)
                      +.+++|+.+|++|
T Consensus       295 ~~~~~nl~~~~~g  307 (307)
T 1wwk_A          295 VEVAEKVVKILKG  307 (307)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHcC
Confidence            9999999999976

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=100.00  E-value=1.2e-50  Score=349.93  Aligned_cols=204  Identities=30%  Similarity=0.416  Sum_probs=182.9

Q ss_pred             CCCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCCC
Q 045521            1 VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEMG   74 (204)
Q Consensus         1 t~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~~   74 (204)
                      +++++++++++|+||+|++.++|+|+||+++|+++||.|+|+||+++++||||++++||++.|+      .+++|.|.+.
T Consensus        73 ~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~  152 (347)
T 1mx3_A           73 ITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQS  152 (347)
T ss_dssp             SCBCHHHHTTCSSCCEEEESSSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCS
T ss_pred             CCCCHHHHhhCCCCCEEEEcccccCcccHHHHHhCCceEEECCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccc
Confidence            3689999999999999999999999999999999999999999999999999999999999999      4678999631


Q ss_pred             C------cc-ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCC----C---C-C----------------
Q 045521           75 Y------KL-TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNT----K---Y-K----------------  123 (204)
Q Consensus        75 ~------~~-~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~----~---~-~----------------  123 (204)
                      .      .. +.+|+|+||||||+|+||+.+|+++++|||+|++|+|+..+..    +   + .                
T Consensus       153 ~~~~~~~~~~~~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P  232 (347)
T 1mx3_A          153 VEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCG  232 (347)
T ss_dssp             HHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHHHHHCSEEEECCC
T ss_pred             cccccccccCccCCCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchhhHhhcCCeecCCHHHHHhcCCEEEEcCC
Confidence            1      01 2689999999999999999999999999999999998653210    0   0 0                


Q ss_pred             ----------------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCC--CCcCCCCceEEcccCCC
Q 045521          124 ----------------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVP--EELFGLENVVLLPHAAS  173 (204)
Q Consensus       124 ----------------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~--~~l~~~~nvilTPH~a~  173 (204)
                                                  |+++|+++|+++|++|+|+||++|||+.||++.  +|||.+||+++|||+++
T Consensus       233 ~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~~L~~~~nvi~tPHia~  312 (347)
T 1mx3_A          233 LNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAW  312 (347)
T ss_dssp             CCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSEEECSSCTT
T ss_pred             CCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhCCCcEEEEeecccCCCCCCCchHHhCCCEEEEchHHH
Confidence                                        999999999999999999999999999999863  58999999999999999


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHcCCCCC---CCCC
Q 045521          174 GTEETRKATADIVIENLEACFLNKPLL---TPVV  204 (204)
Q Consensus       174 ~t~~~~~~~~~~~~~nl~~~~~g~~~~---~~v~  204 (204)
                      +|+++.+++.+.+++|+.+|++|+++.   |+||
T Consensus       313 ~t~~~~~~~~~~~~~ni~~~~~g~~~~~l~~~v~  346 (347)
T 1mx3_A          313 YSEQASIEMREEAAREIRRAITGRIPDSLKNCVN  346 (347)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHSCTTTTCSSBCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCcccCCCCC
Confidence            999999999999999999999998765   7665

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=1.3e-50  Score=343.93  Aligned_cols=200  Identities=25%  Similarity=0.318  Sum_probs=181.0

Q ss_pred             CCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCCCCc
Q 045521            3 ADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEMGYK   76 (204)
Q Consensus         3 i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~~~~   76 (204)
                      .++++++++|+||||++.|+|+|+||++++ ++||.|+|+||+++.+||||++++||++.|+      .+++|.|.+.. 
T Consensus        40 ~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~-~~gi~v~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~-  117 (303)
T 1qp8_A           40 ITAEELAKMPRLKFIQVVTAGLDHLPWESI-PPHVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDV-  117 (303)
T ss_dssp             CCHHHHHHCTTCCCEEBSSSCCTTSCCTTS-CTTSCEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCS-
T ss_pred             CCHHHHhhCCCCcEEEECCcCcccccHHHH-hcCCEEEECCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCC-
Confidence            467899999999999999999999999985 7999999999999999999999999999999      56889997421 


Q ss_pred             cccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC-----CCCC----------------------------
Q 045521           77 LTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN-----TKYK----------------------------  123 (204)
Q Consensus        77 ~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~-----~~~~----------------------------  123 (204)
                      ...+|+|+||||||+|+||+.+|+++++|||+|++++|+..+.     ....                            
T Consensus       118 ~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l  197 (303)
T 1qp8_A          118 EIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEGPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHL  197 (303)
T ss_dssp             CCCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCSSSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHH
T ss_pred             CCCCCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCccccCcccCCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHH
Confidence            2358999999999999999999999999999999999875411     0000                            


Q ss_pred             --------------cceeCHHHHHHHHHcCCceEEEeeCC-CCCCCCC-CCcCCCCceEEcccCCCC--cHHHHHHHHHH
Q 045521          124 --------------GALVDESELVSALLEDRLAAAVLDVF-EHEPQVP-EELFGLENVVLLPHAASG--TEETRKATADI  185 (204)
Q Consensus       124 --------------G~lvd~~aL~~aL~~g~i~ga~lDV~-~~EP~~~-~~l~~~~nvilTPH~a~~--t~~~~~~~~~~  185 (204)
                                    |+++|+++|.++|++|+|+||++||| ++||++. +|||++||+++|||+++.  |.++++++.+.
T Consensus       198 ~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~~~~ep~~~~~~L~~~~nviltPH~~~~~~t~e~~~~~~~~  277 (303)
T 1qp8_A          198 ALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGYGNERVWRQMVME  277 (303)
T ss_dssp             TTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTCCGGGHHHHTSTTEEECCSCSSSSSCHHHHHHHHHH
T ss_pred             hhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEeccCCCCCCCCCCChhhcCCCEEECCCcCCCCCCHHHHHHHHHH
Confidence                          99999999999999999999999999 8899875 499999999999999998  99999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCC
Q 045521          186 VIENLEACFLNKPLLTPVV  204 (204)
Q Consensus       186 ~~~nl~~~~~g~~~~~~v~  204 (204)
                      +++|+.+|++|+++.|.||
T Consensus       278 ~~~nl~~~~~g~~~~~~v~  296 (303)
T 1qp8_A          278 AVRNLITYATGGRPRNIAK  296 (303)
T ss_dssp             HHHHHHHHHTTSCCSCBCC
T ss_pred             HHHHHHHHHcCCCCCceeC
Confidence            9999999999999999886

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=1.4e-50  Score=346.18  Aligned_cols=200  Identities=34%  Similarity=0.518  Sum_probs=181.3

Q ss_pred             CCCCHHHHhcCCC-ceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCC
Q 045521            1 VGADAELIDSLPK-LEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEM   73 (204)
Q Consensus         1 t~i~~~~l~~~~~-Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~   73 (204)
                      +++++++++++|+ ||||++.|+|+|+||+++|+++||.|+|+||+++.+||||++++||++.|+      .+++|.|.+
T Consensus        54 ~~~~~~~l~~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~  133 (320)
T 1gdh_A           54 EKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPG  133 (320)
T ss_dssp             SCBCHHHHHHSCTTCCEEEEESSCCTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCC
T ss_pred             CCCCHHHHHhCCccceEEEECCcccccccHHHHHhCCcEEEEcCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHcCCCCc
Confidence            3689999999999 999999999999999999999999999999999999999999999999999      578899963


Q ss_pred             ---CCccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcC-CCCCC---------C-CCC----------------
Q 045521           74 ---GYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR-AEKPN---------T-KYK----------------  123 (204)
Q Consensus        74 ---~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r-~~~~~---------~-~~~----------------  123 (204)
                         ....+.++.|+||||||+|+||+.+|+++++|||+|++++| +..+.         . ...                
T Consensus       134 ~~~~~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~~p~~  213 (320)
T 1gdh_A          134 WEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPST  213 (320)
T ss_dssp             CCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCC
T ss_pred             cccccccCcCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcChhhhhhcCcEEcCCHHHHHhhCCEEEEeccCc
Confidence               12346799999999999999999999999999999999999 65321         0 000                


Q ss_pred             --------------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCcCCCCceEEcccCCCCcHH
Q 045521          124 --------------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEE  177 (204)
Q Consensus       124 --------------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l~~~~nvilTPH~a~~t~~  177 (204)
                                                |++||+++|.++|++|+|+||++|||++||...+|||++||+++|||++++|.+
T Consensus       214 ~~t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~gA~lDv~~~eP~~~~~L~~~~nviltPH~~~~t~~  293 (320)
T 1gdh_A          214 PETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQ  293 (320)
T ss_dssp             TTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECSSCTTCBHH
T ss_pred             hHHHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCCChhhhCCCEEECCcCCcCcHH
Confidence                                      999999999999999999999999999999445699999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCCC
Q 045521          178 TRKATADIVIENLEACFLNKPLLT  201 (204)
Q Consensus       178 ~~~~~~~~~~~nl~~~~~g~~~~~  201 (204)
                      +..++.+.+ +|+.+|++|+++.+
T Consensus       294 ~~~~~~~~~-~nl~~~~~g~~~~~  316 (320)
T 1gdh_A          294 AREDMAHQA-NDLIDALFGGADMS  316 (320)
T ss_dssp             HHHHHHHHH-HHHHHHHHTTSCCT
T ss_pred             HHHHHHHHH-HHHHHHHcCCCCcc
Confidence            999999999 99999999998764

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=100.00  E-value=5.6e-50  Score=346.04  Aligned_cols=203  Identities=29%  Similarity=0.418  Sum_probs=184.1

Q ss_pred             CCCHHHHhcCC-CceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcC---C
Q 045521            2 GADAELIDSLP-KLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSED---G   71 (204)
Q Consensus         2 ~i~~~~l~~~~-~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~---w   71 (204)
                      ++++++++++| +||||++.++|+|+||+++|+++||.|+|+||+++.+||||++++||++.|+      .+++|.   |
T Consensus        68 ~~~~~~l~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAe~~~~l~L~~~R~~~~~~~~~~~g~~~~w  147 (348)
T 2w2k_A           68 PWNADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPETF  147 (348)
T ss_dssp             CBCHHHHTTSCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHTTCCHHHH
T ss_pred             CCCHHHHHhcccCceEEEECCccccccCHHHHHhCCcEEEECCCCCcHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccc
Confidence            68999999998 6999999999999999999999999999999999999999999999999999      567888   9


Q ss_pred             CC-C---CccccccCCCEEEEEeCChHHHHHHHHHh-hcCCEEEEEcCCCCCC-------C----CCC------------
Q 045521           72 EM-G---YKLTTKISGRSVGIIGLGRIGMAVAKRAE-AFGCFISYRSRAEKPN-------T----KYK------------  123 (204)
Q Consensus        72 ~~-~---~~~~~~l~g~tvGIvG~G~IG~~va~~~~-~fg~~V~~~~r~~~~~-------~----~~~------------  123 (204)
                      .+ .   ...+.+|+|+||||||+|+||+.+|++++ +|||+|++++|+....       .    +..            
T Consensus       148 ~~~~~~~~~~~~~l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~  227 (348)
T 2w2k_A          148 NRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVS  227 (348)
T ss_dssp             HHHHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEEC
T ss_pred             ccccccccccCcCCCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEe
Confidence            42 1   13467999999999999999999999999 9999999999875320       0    000            


Q ss_pred             ------------------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCcCCCCceEEcccCCC
Q 045521          124 ------------------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAAS  173 (204)
Q Consensus       124 ------------------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l~~~~nvilTPH~a~  173 (204)
                                                    |+++|+++|.++|++|+|.||++|||++||...+|||++|||++|||+++
T Consensus       228 vp~~~~t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~~~~L~~~~nviltPH~~~  307 (348)
T 2w2k_A          228 VPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGG  307 (348)
T ss_dssp             CCCSGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTTTSCCHHHHTSSSEEECCSCTT
T ss_pred             CCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCCCCCCCchhhcCCCEEEcCcCCC
Confidence                                          99999999999999999999999999999954458999999999999999


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 045521          174 GTEETRKATADIVIENLEACFLNKPLLTPVV  204 (204)
Q Consensus       174 ~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  204 (204)
                      .|.++..++.+.+++|+.+|++|+++.|.||
T Consensus       308 ~t~e~~~~~~~~~~~ni~~~~~g~~~~~~v~  338 (348)
T 2w2k_A          308 VAIETFHEFERLTMTNIDRFLLQGKPLLTPA  338 (348)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHTCCCCSSBC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHcCCCCcceec
Confidence            9999999999999999999999999999886

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.2e-49  Score=342.12  Aligned_cols=204  Identities=33%  Similarity=0.514  Sum_probs=186.1

Q ss_pred             CCCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCC-
Q 045521            1 VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEM-   73 (204)
Q Consensus         1 t~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~-   73 (204)
                      +++++++++++|+||||++.++|+|+||+++++++||.|+|+||+++.+||||++++||++.|+      .+++|.|.+ 
T Consensus        52 ~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~  131 (333)
T 2d0i_A           52 TKITREVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESH  131 (333)
T ss_dssp             SCBCHHHHTTCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCH
T ss_pred             CCCCHHHHhhCCCceEEEECCcccccccHHHHHhCCcEEEeCCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCcC
Confidence            3689999999999999999999999999999999999999999999999999999999999999      578899963 


Q ss_pred             C-Cccc----cccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC---------CCC-------C---------
Q 045521           74 G-YKLT----TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN---------TKY-------K---------  123 (204)
Q Consensus        74 ~-~~~~----~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~---------~~~-------~---------  123 (204)
                      . ...+    .+|+|+||||||+|.||+.+|+++++|||+|++++|+....         .+.       +         
T Consensus       132 ~~~~~~~~~~~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~e~l~~aDiVil~vp~~  211 (333)
T 2d0i_A          132 AKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLT  211 (333)
T ss_dssp             HHHHTTSCCCCCSTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCHHHHHHHTEEECCHHHHHHHCSEEEECCCCC
T ss_pred             cccccCCcccCCCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchhhhhhcCceecCHHHHHhhCCEEEEcCCCC
Confidence            1 1234    78999999999999999999999999999999999876420         000       0         


Q ss_pred             -------------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCcCCCC-ceEEcccCCCCcHH
Q 045521          124 -------------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLE-NVVLLPHAASGTEE  177 (204)
Q Consensus       124 -------------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l~~~~-nvilTPH~a~~t~~  177 (204)
                                               |.++|+++|.++|++|+|+||++|||++||++.+|||++| ||++|||+++.|.+
T Consensus       212 ~~t~~~i~~~~~~~mk~gilin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~~~~L~~~~~nviltPh~~~~t~~  291 (333)
T 2d0i_A          212 RDTYHIINEERVKKLEGKYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALE  291 (333)
T ss_dssp             TTTTTSBCHHHHHHTBTCEEEECSCGGGBCHHHHHHHHHTTCBCEEEESCCSSSSCSCCGGGGCTTTEEECCSCTTCCHH
T ss_pred             hHHHHHhCHHHHhhCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEecCCCCCCCCCchHHcCCCCEEEcCccCCCcHH
Confidence                                     8999999999999999999999999999998766999999 99999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 045521          178 TRKATADIVIENLEACFLNKPLLTPVV  204 (204)
Q Consensus       178 ~~~~~~~~~~~nl~~~~~g~~~~~~v~  204 (204)
                      +..++.+.+++|+.+|++|+++.|.||
T Consensus       292 ~~~~~~~~~~~n~~~~~~g~~~~~~v~  318 (333)
T 2d0i_A          292 AQEDVGFRAVENLLKVLRGEVPEDLVN  318 (333)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCTTBSC
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCcCccC
Confidence            999999999999999999999999886

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=100.00  E-value=2e-49  Score=340.93  Aligned_cols=204  Identities=46%  Similarity=0.632  Sum_probs=184.5

Q ss_pred             CCCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCC--
Q 045521            1 VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGE--   72 (204)
Q Consensus         1 t~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~--   72 (204)
                      +++++++++++|+||||++.|+|+|+||+++++++||.|+|+||+++.+||||++++||++.|+      .+++|.|.  
T Consensus        55 ~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~w~~~  134 (334)
T 2dbq_A           55 ERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKR  134 (334)
T ss_dssp             SCBCHHHHHTCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTSHHHHT
T ss_pred             CCCCHHHHhhCCCceEEEECCcccccccHHHHHhCCCEEEeCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCccc
Confidence            3689999999999999999999999999999999999999999999999999999999999999      46788885  


Q ss_pred             --C---CCccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC---------CCCC---------------
Q 045521           73 --M---GYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN---------TKYK---------------  123 (204)
Q Consensus        73 --~---~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~---------~~~~---------------  123 (204)
                        +   ....+.+|.|+||||||+|.||+.+|+++++|||+|++++|+....         .+..               
T Consensus       135 ~~~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~~~l~~aDvVil~vp~  214 (334)
T 2dbq_A          135 GVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPL  214 (334)
T ss_dssp             TCCCCTTTTCCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHCCEECCHHHHHHHCSEEEECCCC
T ss_pred             ccccccccccccCCCCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcchhhHhhcCcccCCHHHHHhhCCEEEECCCC
Confidence              1   1123678999999999999999999999999999999999876421         0000               


Q ss_pred             ---------------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCcCCCCceEEcccCCCCcH
Q 045521          124 ---------------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTE  176 (204)
Q Consensus       124 ---------------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l~~~~nvilTPH~a~~t~  176 (204)
                                                 |.++|+++|.++|++|+|+||++|||++||...+|||++|||++|||+++.|.
T Consensus       215 ~~~t~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~EP~~~~~L~~~~~vi~tPh~~~~t~  294 (334)
T 2dbq_A          215 TRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASF  294 (334)
T ss_dssp             CTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCCHHHHHCTTEEECSSCTTCSH
T ss_pred             ChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEecCCCCCCCCCchhhcCCCEEECCccCCCcH
Confidence                                       99999999999999999999999999999933459999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 045521          177 ETRKATADIVIENLEACFLNKPLLTPVV  204 (204)
Q Consensus       177 ~~~~~~~~~~~~nl~~~~~g~~~~~~v~  204 (204)
                      ++..++.+.+++|+.+|++|+++.|.||
T Consensus       295 ~~~~~~~~~~~~n~~~~~~g~~~~~~v~  322 (334)
T 2dbq_A          295 GAREGMAELVAKNLIAFKRGEIPPTLVN  322 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCTTBSC
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCccccC
Confidence            9999999999999999999999999886

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=100.00  E-value=5.4e-49  Score=337.66  Aligned_cols=203  Identities=34%  Similarity=0.513  Sum_probs=185.0

Q ss_pred             CCCHHHHhcC-CCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCC-
Q 045521            2 GADAELIDSL-PKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEM-   73 (204)
Q Consensus         2 ~i~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~-   73 (204)
                      ++++++++++ |+||||++.++|+|+||+++++++||.|+|+||+++.+||||++++||++.|+      .+++|.|.+ 
T Consensus        64 ~~~~~~l~~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~  143 (330)
T 2gcg_A           64 HVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSW  143 (330)
T ss_dssp             CBCHHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSC
T ss_pred             CCCHHHHHhcCCCceEEEECCcccccccHHHHHhCCceEEeCCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCccc
Confidence            6899999999 99999999999999999999999999999999999999999999999999999      568899973 


Q ss_pred             --CCccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC-----CC--C-C--------------------
Q 045521           74 --GYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN-----TK--Y-K--------------------  123 (204)
Q Consensus        74 --~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~-----~~--~-~--------------------  123 (204)
                        ....+.++.|+||||||+|.||+.+|+++++|||+|++++|+....     .+  + .                    
T Consensus       144 ~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~l~e~l~~aDvVi~~vp~~~~  223 (330)
T 2gcg_A          144 KPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPA  223 (330)
T ss_dssp             CTTSSCBCCCTTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEECCHHHHHHHCSEEEECCCCCTT
T ss_pred             CcccccCcCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCceeCCHHHHHhhCCEEEEeCCCChH
Confidence              1123679999999999999999999999999999999999764310     00  0 0                    


Q ss_pred             ------------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCC-CcCCCCceEEcccCCCCcHHH
Q 045521          124 ------------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPE-ELFGLENVVLLPHAASGTEET  178 (204)
Q Consensus       124 ------------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~-~l~~~~nvilTPH~a~~t~~~  178 (204)
                                              |.++|+++|.++|++|++.|+++|||++||++.+ |||++|||++|||+|+.|.++
T Consensus       224 t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~epl~~~~~l~~~~nvi~tPh~~~~t~~~  303 (330)
T 2gcg_A          224 TEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRT  303 (330)
T ss_dssp             TTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECCSCTTCBHHH
T ss_pred             HHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCccEEEeCCCCCCCCCCCChhhcCCCEEECCCCCCCcHHH
Confidence                                    8999999999999999999999999999997664 999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCCC
Q 045521          179 RKATADIVIENLEACFLNKPLLTPVV  204 (204)
Q Consensus       179 ~~~~~~~~~~nl~~~~~g~~~~~~v~  204 (204)
                      ..++.+.+++|+.+|++|+++.|.||
T Consensus       304 ~~~~~~~~~~n~~~~~~g~~~~~~v~  329 (330)
T 2gcg_A          304 RNTMSLLAANNLLAGLRGEPMPSELK  329 (330)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCTTEEC
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence            99999999999999999999999886

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=100.00  E-value=8.8e-49  Score=330.57  Aligned_cols=184  Identities=26%  Similarity=0.331  Sum_probs=164.2

Q ss_pred             cCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCCCCccccccCC
Q 045521           10 SLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEMGYKLTTKISG   83 (204)
Q Consensus        10 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~~~~~~~~l~g   83 (204)
                      ++|+||||++.|+|+|+||++++++++|.++| +|.++.+||||++++||++.|+      .+++|.|.+.  ...+|+|
T Consensus        46 ~~~~Lk~I~~~~~G~d~id~~~~~~~~~~~~~-~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~--~~~~l~g  122 (290)
T 3gvx_A           46 LGKRTKMIQAISAGVDHIDVNGIPENVVLCSN-AGAYSISVAEHAFALLLAHAKNILENNELMKAGIFRQS--PTTLLYG  122 (290)
T ss_dssp             CCSSCCEEEECSSCCTTSCGGGSCTTSEEECC-HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC--CCCCCTT
T ss_pred             hhhhhHHHHHHhcCCceeecCCCccceEEeec-CCcceeeHHHHHHHHHHHHHHhhhhhhhHhhhcccccC--Cceeeec
Confidence            68999999999999999999999887665555 5889999999999999999999      5688999852  2368999


Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCC----------------------------------------
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYK----------------------------------------  123 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~----------------------------------------  123 (204)
                      +||||||+|+||+.+|+++++|||+|++|+|+..+.....                                        
T Consensus       123 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~g  202 (290)
T 3gvx_A          123 KALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKN  202 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTCSEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTT
T ss_pred             chheeeccCchhHHHHHHHHhhCcEEEEEeccccccccccccCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhcC
Confidence            9999999999999999999999999999998764321100                                        


Q ss_pred             --------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCcCCCCceEEcccCC-CCcHHHHHHHHHHHHHHHHHHH
Q 045521          124 --------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAA-SGTEETRKATADIVIENLEACF  194 (204)
Q Consensus       124 --------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l~~~~nvilTPH~a-~~t~~~~~~~~~~~~~nl~~~~  194 (204)
                              |+++|++||+++|++|+|.||++|||++||+  +|||++|||++|||+| ++|.++.+++.+.+++|+.+|+
T Consensus       203 ailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~--~pL~~~~nvilTPHiag~~t~e~~~~~~~~~~~ni~~~~  280 (290)
T 3gvx_A          203 LTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPE--ITETNLRNAILSPHVAGGMSGEIMDIAIQLAFENVRNFF  280 (290)
T ss_dssp             CEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTS--CCSCCCSSEEECCSCSSCBTTBCCHHHHHHHHHHHHHHT
T ss_pred             ceEEEeehhcccCCcchhhhhhhccceEEeeccccCCcc--cchhhhhhhhcCccccCCccchHHHHHHHHHHHHHHhhh
Confidence                    9999999999999999999999999999997  8999999999999999 9999999999999999999999


Q ss_pred             cCCC
Q 045521          195 LNKP  198 (204)
Q Consensus       195 ~g~~  198 (204)
                      +|+.
T Consensus       281 ~~~~  284 (290)
T 3gvx_A          281 EGEG  284 (290)
T ss_dssp             C---
T ss_pred             cCCC
Confidence            9874

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=100.00  E-value=3e-48  Score=337.23  Aligned_cols=184  Identities=24%  Similarity=0.335  Sum_probs=166.9

Q ss_pred             CCCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhhHHHhcCCCCCCccccc
Q 045521            1 VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTK   80 (204)
Q Consensus         1 t~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~w~~~~~~~~~   80 (204)
                      |++++++++ .++||||++.++|+||||+++++++||.|+|+||+++.+||||+++++|++.|+            .+.+
T Consensus        50 ~~v~~~ll~-~~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~n~pg~~~~~VAE~~l~~lL~l~r~------------~g~~  116 (381)
T 3oet_A           50 TKVNESLLS-GTPINFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAER------------DGFS  116 (381)
T ss_dssp             SCBSHHHHT-TSCCCEEEESSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHH------------TTCC
T ss_pred             CCCCHHHHc-CCCCEEEEEccccccccCHHHHHhCCEEEEECCCcCcchhHHHHHHHHHHHHHh------------cCCc
Confidence            468999999 677999999999999999999999999999999999999999999999999986            2468


Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC---CCC--------------------------C--------
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN---TKY--------------------------K--------  123 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~---~~~--------------------------~--------  123 (204)
                      |+||||||||+|+||+.+|+++++|||+|++|+|+....   ..+                          .        
T Consensus       117 l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~~~  196 (381)
T 3oet_A          117 LRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETL  196 (381)
T ss_dssp             GGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHTTCCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCHHH
T ss_pred             cCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHhccCcccCCHHHHHhhCCEEEEcCcCCccccccchhhcCHHH
Confidence            999999999999999999999999999999998642100   000                          0        


Q ss_pred             ---------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCcCCCCceEEcccCCCCcHHHHHHHHHHHHH
Q 045521          124 ---------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATADIVIE  188 (204)
Q Consensus       124 ---------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l~~~~nvilTPH~a~~t~~~~~~~~~~~~~  188 (204)
                                     |++||++||+++|++|++.||+||||++||+++++||.++ +++|||+||+|.|+..++..++++
T Consensus       197 l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDV~e~EP~~~~~L~~~~-~i~TPHiag~t~e~~~~~~~~~~~  275 (381)
T 3oet_A          197 IRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAV-DIGTSHIAGYTLEGKARGTTQVFE  275 (381)
T ss_dssp             HHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSCCHHHHHHS-SEECSSCTTCCHHHHHHHHHHHHH
T ss_pred             HhcCCCCcEEEECCCCcccCHHHHHHHHHhCCCeEEEeeccccCCCCcchhhhCC-EEECCccCcCcHHHHHHHHHHHHH
Confidence                           9999999999999999999999999999999888899775 899999999999999999999999


Q ss_pred             HHHHHHcCCC
Q 045521          189 NLEACFLNKP  198 (204)
Q Consensus       189 nl~~~~~g~~  198 (204)
                      |+.+|+.+.+
T Consensus       276 ~l~~~l~~~~  285 (381)
T 3oet_A          276 AYSAFIGREQ  285 (381)
T ss_dssp             HHHHHTTCCC
T ss_pred             HHHHHHcCCc
Confidence            9999998754

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=100.00  E-value=3.8e-47  Score=344.21  Aligned_cols=204  Identities=34%  Similarity=0.505  Sum_probs=186.6

Q ss_pred             CCCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCCC
Q 045521            1 VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEMG   74 (204)
Q Consensus         1 t~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~~   74 (204)
                      |++++++++++|+||||++.|+|+||+|+++|+++||.|+|+|++++.+||||++++||++.|+      .+++|.|.+.
T Consensus        54 ~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~g~w~~~  133 (529)
T 1ygy_A           54 TTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRS  133 (529)
T ss_dssp             SCBCHHHHHTCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGG
T ss_pred             CCCCHHHHhhCCCCcEEEECCcCcCccCHhHHHhCCeEEEECCCcchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCccc
Confidence            4789999999999999999999999999999999999999999999999999999999999999      5788999852


Q ss_pred             CccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC---------CCC-------C---------------
Q 045521           75 YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN---------TKY-------K---------------  123 (204)
Q Consensus        75 ~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~---------~~~-------~---------------  123 (204)
                      ...+.+|+|+||||||+|+||+.+|+++++|||+|++|+|+....         ...       +               
T Consensus       134 ~~~~~~l~g~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~e~~~~aDvV~l~~P~~~~t~~~  213 (529)
T 1ygy_A          134 SFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGL  213 (529)
T ss_dssp             GCCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHHHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTC
T ss_pred             CcCccccCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCcEEcCHHHHHhcCCEEEECCCCchHHHHH
Confidence            234789999999999999999999999999999999999865210         000       0               


Q ss_pred             --------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCcCCCCceEEcccCCCCcHHHHHHHH
Q 045521          124 --------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATA  183 (204)
Q Consensus       124 --------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l~~~~nvilTPH~a~~t~~~~~~~~  183 (204)
                                          |.++|+++|.++|++|+|+||++|||+.||...+|||+++|+++|||+++.|.++.+++.
T Consensus       214 i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~vilTPh~~~~t~ea~~~~~  293 (529)
T 1ygy_A          214 IDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRAG  293 (529)
T ss_dssp             BCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEEECSSCSSCBHHHHHHHH
T ss_pred             hCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCEEEccccCCCCHHHHHHHH
Confidence                                999999999999999999999999999999877799999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCCCCC
Q 045521          184 DIVIENLEACFLNKPLLTPVV  204 (204)
Q Consensus       184 ~~~~~nl~~~~~g~~~~~~v~  204 (204)
                      ..+++|+.+|+.|+++.+.|+
T Consensus       294 ~~~~~~l~~~l~~~~~~~~v~  314 (529)
T 1ygy_A          294 TDVAESVRLALAGEFVPDAVN  314 (529)
T ss_dssp             HHHHHHHHHHHTTCCCTTBCS
T ss_pred             HHHHHHHHHHHcCCCCCcccC
Confidence            999999999999998877764

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=100.00  E-value=3.8e-47  Score=330.79  Aligned_cols=184  Identities=23%  Similarity=0.301  Sum_probs=167.9

Q ss_pred             CCCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhhHHHhcCCCCCCccccc
Q 045521            1 VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTK   80 (204)
Q Consensus         1 t~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~w~~~~~~~~~   80 (204)
                      |++++++++ +|+||||++.++|+||||+++++++||.|+|+||+++.+||||++++||++.|+      |      +.+
T Consensus        47 ~~~~~~~l~-~~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~n~pg~~~~~vAE~~l~~lL~l~r~------~------~~~  113 (380)
T 2o4c_A           47 TEVSRAALA-GSPVRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEV------R------GAD  113 (380)
T ss_dssp             SCBCHHHHT-TSCCCEEEECSSCSTTBCHHHHHHHTCEEECCTTTTHHHHHHHHHHHHHHHHHH------H------TCC
T ss_pred             CCCCHHHhc-CCCceEEEEcCcccchhhHHHHHhCCCEEEeCCCcChHHHHHHHHHHHHHHHhh------h------hcc
Confidence            468999999 899999999999999999999999999999999999999999999999999997      2      357


Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCC------CC-------------------CC----C--------
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKP------NT-------------------KY----K--------  123 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~------~~-------------------~~----~--------  123 (204)
                      |+|+||||||+|+||+.+|+++++|||+|++++++...      ..                   ..    .        
T Consensus       114 l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~g~~~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~~~~  193 (380)
T 2o4c_A          114 LAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAREPDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPR  193 (380)
T ss_dssp             GGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHHSTTSCCCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBCHHH
T ss_pred             cCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhhccCcccCCHHHHHHhCCEEEEeccCccccccchhhhcCHHH
Confidence            99999999999999999999999999999999864210      00                   00    0        


Q ss_pred             ---------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCcCCCCceEEcccCCCCcHHHHHHHHHHHHH
Q 045521          124 ---------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATADIVIE  188 (204)
Q Consensus       124 ---------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l~~~~nvilTPH~a~~t~~~~~~~~~~~~~  188 (204)
                                     |++||++||+++|++|+|.||+||||++||+++++|+. +|+++|||+|++|.++..++.+++++
T Consensus       194 l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i~~A~LDV~~~EP~~~~~l~~-~nvi~TPHiag~t~e~~~~~~~~~~~  272 (380)
T 2o4c_A          194 LAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQADPELAA-RCLIATPHIAGYSLEGKLRGTAQIYQ  272 (380)
T ss_dssp             HHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSCCHHHHT-TCSEECSSCTTCCHHHHHHHHHHHHH
T ss_pred             HhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCceEEeeeeccCCCCchhhcc-CCEEEccccCcCCHHHHHHHHHHHHH
Confidence                           99999999999999999999999999999987778887 49999999999999999999999999


Q ss_pred             HHHHHHcCCC
Q 045521          189 NLEACFLNKP  198 (204)
Q Consensus       189 nl~~~~~g~~  198 (204)
                      |+.+|++|++
T Consensus       273 nl~~~l~g~~  282 (380)
T 2o4c_A          273 AYCAWRGIAE  282 (380)
T ss_dssp             HHHHHHTCCC
T ss_pred             HHHHHHcCCC
Confidence            9999999985

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=99.94  E-value=4.7e-29  Score=222.87  Aligned_cols=179  Identities=13%  Similarity=0.127  Sum_probs=143.9

Q ss_pred             CCceEEE-ECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhhHHHhcCCCCCCccccccCCCEEEEEe
Q 045521           12 PKLEIVA-TCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTKISGRSVGIIG   90 (204)
Q Consensus        12 ~~Lk~I~-~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~w~~~~~~~~~l~g~tvGIvG   90 (204)
                      |+++.|+ .+++|+|++  ++++++||.|+|+++++. +|||+.+-.+.. .++...+| |.+  ..+.++.||||||+|
T Consensus       212 ~~l~gi~eet~~Gvd~l--~a~~~~Gilv~n~~~vn~-sVae~l~r~~~~-~~~~l~~g-w~~--~~g~~L~GktVgIIG  284 (494)
T 3d64_A          212 AHIKGVTEETTTGVHRL--YQMEKDGRLPFPAFNVND-SVTKSKFDNLYG-CRESLVDG-IKR--ATDVMIAGKIAVVAG  284 (494)
T ss_dssp             TTCCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHHHHHHHHH-HHTTHHHH-HHH--HHCCCCTTCEEEEEC
T ss_pred             hCcEEEEEEcccCHhhH--HHHHHCCCEEEECCCccH-HHHHHHHhhhHh-hhhhhhhh-hhh--ccccccCCCEEEEEc
Confidence            7899998 889999988  789999999999999999 999965433222 22233444 753  235689999999999


Q ss_pred             CChHHHHHHHHHhhcCCEEEEEcCCCCCC-----CCCC------------------------------------------
Q 045521           91 LGRIGMAVAKRAEAFGCFISYRSRAEKPN-----TKYK------------------------------------------  123 (204)
Q Consensus        91 ~G~IG~~va~~~~~fg~~V~~~~r~~~~~-----~~~~------------------------------------------  123 (204)
                      +|.||+.+|+++++|||+|+++++++...     .++.                                          
T Consensus       285 ~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~~~l~ell~~aDiVi~~~~t~~lI~~~~l~~MK~gAilINvg  364 (494)
T 3d64_A          285 YGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVVTMEYAADKADIFVTATGNYHVINHDHMKAMRHNAIVCNIG  364 (494)
T ss_dssp             CSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECSSSSCSBCHHHHHHCCTTEEEEECS
T ss_pred             cCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEeCCHHHHHhcCCEEEECCCcccccCHHHHhhCCCCcEEEEcC
Confidence            99999999999999999999999875321     0100                                          


Q ss_pred             -cce-eCHHHHHHHHHcCCceEEEeeCCCCCCCCC-CCcCCC--CceEEcccCC-CCcHH-HHHHHHHHHHHHHHHHHcC
Q 045521          124 -GAL-VDESELVSALLEDRLAAAVLDVFEHEPQVP-EELFGL--ENVVLLPHAA-SGTEE-TRKATADIVIENLEACFLN  196 (204)
Q Consensus       124 -G~l-vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~l~~~--~nvilTPH~a-~~t~~-~~~~~~~~~~~nl~~~~~g  196 (204)
                       |.+ ||+++| +||++|+|+ +++|   .||+++ +|||.+  ||+++| |+| +++.+ ...++..++++|+.+|++|
T Consensus       365 rg~veID~~aL-~AL~~g~I~-~~~D---v~plp~~~pL~~l~~~nvv~t-H~atg~~~~~~~~~~a~~~~~ni~~~~~g  438 (494)
T 3d64_A          365 HFDSEIDVAST-RQYQWENIK-PQVD---HIIFPDGKRVILLAEGRLVNL-GCATGHPSFVMSNSFTNQTLAQIELFTRG  438 (494)
T ss_dssp             SSSCSBCCGGG-TTSEEEEEE-TTEE---EEECTTSCEEEEEGGGSBHHH-HTSCCSCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCcchhchHHH-HhhhcCccc-eeEE---EEECCCCCchhhcCCCCEEEE-eCcCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence             888 699999 999999997 4445   456654 589988  999999 999 66755 6778889999999999999


Q ss_pred             CCCCCCC
Q 045521          197 KPLLTPV  203 (204)
Q Consensus       197 ~~~~~~v  203 (204)
                      +++.|.|
T Consensus       439 ~~~~n~V  445 (494)
T 3d64_A          439 GEYANKV  445 (494)
T ss_dssp             GGSCSSE
T ss_pred             CCCCCce
Confidence            9988876

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=99.94  E-value=8.4e-29  Score=220.52  Aligned_cols=182  Identities=14%  Similarity=0.096  Sum_probs=147.3

Q ss_pred             CCCceEEE-ECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhhHHHhcCCCCCCccccccCCCEEEEE
Q 045521           11 LPKLEIVA-TCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTKISGRSVGII   89 (204)
Q Consensus        11 ~~~Lk~I~-~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~w~~~~~~~~~l~g~tvGIv   89 (204)
                      +|+++.|+ .+++|+|++  +++.++||.++|+++++. +|||+.+-.+. ..++.+++| |.+  ..+.++.|||||||
T Consensus       191 ~~~l~gi~eet~~Gvd~l--~a~~~~Gilv~p~~~vn~-sVae~l~r~~~-~~~~~l~~g-w~r--~~~~~l~GktVgII  263 (479)
T 1v8b_A          191 AKKIIGVSEETTTGVLRL--KKMDKQNELLFTAINVND-AVTKQKYDNVY-GCRHSLPDG-LMR--ATDFLISGKIVVIC  263 (479)
T ss_dssp             HTTCCEEEECSHHHHHHH--HHHHHTTCCCSEEEECTT-SHHHHTTHHHH-HHHHHHHHH-HHH--HHCCCCTTSEEEEE
T ss_pred             hcCeEEEEEeeCccHhHH--HHHHHcCCEEeccCCccH-HHHHHHHhchH-hHHHHHhhh-hhh--ccccccCCCEEEEE
Confidence            37899998 889999988  789999999999999999 99994332221 122244556 864  23568999999999


Q ss_pred             eCChHHHHHHHHHhhcCCEEEEEcCCCCCC-----CCCC-----------------------------------------
Q 045521           90 GLGRIGMAVAKRAEAFGCFISYRSRAEKPN-----TKYK-----------------------------------------  123 (204)
Q Consensus        90 G~G~IG~~va~~~~~fg~~V~~~~r~~~~~-----~~~~-----------------------------------------  123 (204)
                      |+|.||+.+|+++++|||+|+++++++...     ..+.                                         
T Consensus       264 G~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~~~~l~ell~~aDiVi~~~~t~~lI~~~~l~~MK~gailiNv  343 (479)
T 1v8b_A          264 GYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCTGNVDVIKLEHLLKMKNNAVVGNI  343 (479)
T ss_dssp             CCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECCSSSSSBCHHHHTTCCTTCEEEEC
T ss_pred             eeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCCEecCHHHHHhcCCEEEECCChhhhcCHHHHhhcCCCcEEEEe
Confidence            999999999999999999999999875321     0000                                         


Q ss_pred             --cce-eCHHHHHH--HHHcCCceEEEeeCCCCCCCCCCCcCCC--CceEEcccCC-CCcHH-HHHHHHHHHHHHHHHHH
Q 045521          124 --GAL-VDESELVS--ALLEDRLAAAVLDVFEHEPQVPEELFGL--ENVVLLPHAA-SGTEE-TRKATADIVIENLEACF  194 (204)
Q Consensus       124 --G~l-vd~~aL~~--aL~~g~i~ga~lDV~~~EP~~~~~l~~~--~nvilTPH~a-~~t~~-~~~~~~~~~~~nl~~~~  194 (204)
                        |.+ ||+++|.+  +|++|+|+ +++|||+.++  .+|||.+  ||+++| |+| +++.+ ...++..++++|+..|+
T Consensus       344 grg~~EId~~aL~~~~AL~~g~I~-a~lDv~plp~--~~~l~~l~~~nvv~t-H~atghp~e~~~~s~a~~~~~ni~~~~  419 (479)
T 1v8b_A          344 GHFDDEIQVNELFNYKGIHIENVK-PQVDRITLPN--GNKIIVLARGRLLNL-GCATGHPAFVMSFSFCNQTFAQLDLWQ  419 (479)
T ss_dssp             SSTTTSBCHHHHHTSTTCEEEEEE-TTEEEEECTT--SCEEEEEGGGSBHHH-HSSCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCccccchhhhccccceeeeEe-eeEEEEECCC--CCeeeEecCCCEEEE-eccCCCCchhHHHHHHHHHHHHHHHHH
Confidence              888 99999999  99999998 8999984322  3588888  999999 999 67766 56778899999999999


Q ss_pred             cCC--CCCCCC
Q 045521          195 LNK--PLLTPV  203 (204)
Q Consensus       195 ~g~--~~~~~v  203 (204)
                      +|+  ++.|.|
T Consensus       420 ~g~~~~l~n~V  430 (479)
T 1v8b_A          420 NKDTNKYENKV  430 (479)
T ss_dssp             TTTSSSCCSSE
T ss_pred             cCCCCcCCcce
Confidence            999  888765

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=99.81  E-value=2.5e-20  Score=156.81  Aligned_cols=97  Identities=24%  Similarity=0.352  Sum_probs=89.3

Q ss_pred             CCCHHHHhcCCCceEEEECCCCCCCCCh-hhHhhCCcEEEeCC------CCCchhHHHHHHHHHHHHHhhHHHhcCCCCC
Q 045521            2 GADAELIDSLPKLEIVATCSAGLDKIDL-VKCKEKGIQVTNTP------DVLTDDVADAAIGLTLAVLRRFVRSEDGEMG   74 (204)
Q Consensus         2 ~i~~~~l~~~~~Lk~I~~~~~G~d~id~-~~~~~~gI~v~n~~------~~~~~~vAE~~l~~~L~~~R~~~~~~~w~~~   74 (204)
                      ++++++++.+|+||+|+   +|+|++|+ ++++++||.|+|++      ++++.+|||++++++|...            
T Consensus        85 ~~~~~~l~~~~~l~~i~---~G~d~id~~~~~~~~gi~v~~~~~~~~~~~~~~~svae~a~~~~l~~~------------  149 (293)
T 3d4o_A           85 VLTEEMIEKTPNHCVVY---SGISNTYLNQCMKKTNRTLVKLMERDDIAIYNSIPTAEGTIMMAIQHT------------  149 (293)
T ss_dssp             BCCHHHHHTSCTTCEEE---ESSCCHHHHHHHHHHTCEEEEGGGCHHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred             cchHHHHHhCCCCCEEE---ecCCCHHHHHHHHHcCCeEEEecCCceeeeeccHhHHHHHHHHHHHhc------------
Confidence            47899999999999997   89999998 89999999999998      8899999999999988642            


Q ss_pred             CccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           75 YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        75 ~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                         +.++.|+||||||+|+||+.+|+++++|||+|++++|+.
T Consensus       150 ---~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          150 ---DFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             ---SSCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             ---CCCCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence               357999999999999999999999999999999999875

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=99.72  E-value=1.8e-19  Score=161.22  Aligned_cols=180  Identities=13%  Similarity=0.106  Sum_probs=132.8

Q ss_pred             Cce-EEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhhHHHhcCCCCCCccccccCCCEEEEEeC
Q 045521           13 KLE-IVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTKISGRSVGIIGL   91 (204)
Q Consensus        13 ~Lk-~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~w~~~~~~~~~l~g~tvGIvG~   91 (204)
                      +++ .+-..++|+|++  .++.++||.++|+++++. +|||+.+-.+.. .+.....+ |.+  ..+..+.|++|+|+|+
T Consensus       210 ~i~GvveetgtGVd~l--~a~~~~Gilv~~~~~vn~-sVae~~~r~l~~-~~~s~~~g-~~r--~~~~~l~GktV~IiG~  282 (494)
T 3ce6_A          210 SVKGVTEETTTGVLRL--YQFAAAGDLAFPAINVND-SVTKSKFDNKYG-TRHSLIDG-INR--GTDALIGGKKVLICGY  282 (494)
T ss_dssp             HCCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHHTTHHHHH-HHHHHHHH-HHH--HHCCCCTTCEEEEECC
T ss_pred             CeEEEEEEeCCChhHH--HHHHHcCCEEEecCCccH-HHHHHHHhhhhh-hhhhhhHH-HHh--ccCCCCCcCEEEEEcc
Confidence            444 445889999998  678899999999999998 999964433221 12222222 432  1134689999999999


Q ss_pred             ChHHHHHHHHHhhcCCEEEEEcCCCCCC-----CC------------CC-------------------------------
Q 045521           92 GRIGMAVAKRAEAFGCFISYRSRAEKPN-----TK------------YK-------------------------------  123 (204)
Q Consensus        92 G~IG~~va~~~~~fg~~V~~~~r~~~~~-----~~------------~~-------------------------------  123 (204)
                      |.||+.+|+++++||++|+++++++...     .+            .+                               
T Consensus       283 G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~~~~l~e~l~~aDvVi~atgt~~~i~~~~l~~mk~ggilvnvG~  362 (494)
T 3ce6_A          283 GDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDVVTVEEAIGDADIVVTATGNKDIIMLEHIKAMKDHAILGNIGH  362 (494)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHGGGCSEEEECSSSSCSBCHHHHHHSCTTCEEEECSS
T ss_pred             CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCEEecHHHHHhCCCEEEECCCCHHHHHHHHHHhcCCCcEEEEeCC
Confidence            9999999999999999999999865320     00            00                               


Q ss_pred             cce-eCHHHHHH-HHHcCCceEEEeeCCCCCCCCC-CCcCCCCceE----EcccCCCCcHHHHHHHHHHHHHHHHHHHcC
Q 045521          124 GAL-VDESELVS-ALLEDRLAAAVLDVFEHEPQVP-EELFGLENVV----LLPHAASGTEETRKATADIVIENLEACFLN  196 (204)
Q Consensus       124 G~l-vd~~aL~~-aL~~g~i~ga~lDV~~~EP~~~-~~l~~~~nvi----lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g  196 (204)
                      +.. ||+++|.+ +|++++|. +++|+++.++... -.++..+|++    +|||+++.+.++   +.+++.+++..|.+|
T Consensus       363 ~~~eId~~aL~~~aL~~~~I~-~~ldv~~~~~~~~~l~LL~~grlvnL~~~TPH~a~~~~~s---~~~qa~~ai~~~~~g  438 (494)
T 3ce6_A          363 FDNEIDMAGLERSGATRVNVK-PQVDLWTFGDTGRSIIVLSEGRLLNLGNATGHPSFVMSNS---FANQTIAQIELWTKN  438 (494)
T ss_dssp             SGGGBCHHHHHHTTCEEEEEE-TTEEEEECTTTCCEEEEEGGGSCHHHHHSCCSCHHHHHHH---HHHHHHHHHHHHHTG
T ss_pred             CCCccCHHHHHHhhhccceEE-EEEEEeecCCcchHHHHHhCCCEEeccCCCCCccccchHH---HHHHHHHHHHHHHcC
Confidence            556 89999998 89889988 6679986643211 1466778888    999999888765   477899999999998


Q ss_pred             CCCCCCC
Q 045521          197 KPLLTPV  203 (204)
Q Consensus       197 ~~~~~~v  203 (204)
                      +++.+.|
T Consensus       439 ~~~~~~V  445 (494)
T 3ce6_A          439 DEYDNEV  445 (494)
T ss_dssp             GGCCSSE
T ss_pred             CCCCCEE
Confidence            8766543

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=99.66  E-value=3.3e-17  Score=144.10  Aligned_cols=131  Identities=16%  Similarity=0.258  Sum_probs=102.4

Q ss_pred             chhHHHHHHHHHHHHHhhHHHhcCCCCCCccccc-cCCCEEEEEeCChHHHHHHHHHhh-cCCEEEEEcCCCCC------
Q 045521           47 TDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTK-ISGRSVGIIGLGRIGMAVAKRAEA-FGCFISYRSRAEKP------  118 (204)
Q Consensus        47 ~~~vAE~~l~~~L~~~R~~~~~~~w~~~~~~~~~-l~g~tvGIvG~G~IG~~va~~~~~-fg~~V~~~~r~~~~------  118 (204)
                      ..+++--++..+...++.            .+.+ |+||||||+|+|+||+.+|+++++ |||+|++++++...      
T Consensus       187 ~~aTg~Gv~~~~~~~~~~------------~G~~~l~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD~~g~~~~~~g  254 (419)
T 1gtm_A          187 IEATARGASYTIREAAKV------------LGWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDG  254 (419)
T ss_dssp             TTHHHHHHHHHHHHHHHH------------TTCSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEE
T ss_pred             CcchhhHHHHHHHHHHHH------------hCCcccCCCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeCCCccccCccC
Confidence            345555555555555543            2456 999999999999999999999999 99999988543200      


Q ss_pred             -----------C----CCC------C-----------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCC--CC
Q 045521          119 -----------N----TKY------K-----------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVP--EE  158 (204)
Q Consensus       119 -----------~----~~~------~-----------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~--~~  158 (204)
                                 .    ..+      .                 |.+||+++ +++|++++|.+++     +||+++  ++
T Consensus       255 vdl~~L~~~~d~~~~l~~l~~t~~i~~~~l~~mk~dilIn~ArG~~Vde~a-~~aL~~~~I~~aA-----neP~t~~a~~  328 (419)
T 1gtm_A          255 LNADEVLKWKNEHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVITKKN-ADNIKAKIVAEVA-----NGPVTPEADE  328 (419)
T ss_dssp             ECHHHHHHHHHHHSSSTTCTTSEEECHHHHHHSCCSEEEECSCSCCBCTTG-GGGCCCSEEECCS-----SSCBCHHHHH
T ss_pred             CCHHHHHHHHHhcCEeecCccCeeeCHHHHHhCCCCEEEECCCcccCCHHH-HHHhcCCEEEEee-----CCCCCcchHH
Confidence                       0    000      0                 99999999 6999999999887     899765  38


Q ss_pred             cCCCCceEEcccC----C-----------------CCcHHHHHHHHHHHHHHHHHHHc
Q 045521          159 LFGLENVVLLPHA----A-----------------SGTEETRKATADIVIENLEACFL  195 (204)
Q Consensus       159 l~~~~nvilTPH~----a-----------------~~t~~~~~~~~~~~~~nl~~~~~  195 (204)
                      ||..+||++|||+    |                 +.+++...++.+.+.+++.++++
T Consensus       329 ll~~~~V~itPhiaaNaGGvt~s~~E~~qn~~~~~w~~~ev~~~l~~~m~~~~~~~~~  386 (419)
T 1gtm_A          329 ILFEKGILQIPDFLCNAGGVTVSYFEWVQNITGYYWTIEEVRERLDKKMTKAFYDVYN  386 (419)
T ss_dssp             HHHHTTCEEECHHHHTTHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCEEEECchhhhCCcceeeeehhhhcccccccCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999    5                 56777888888888899888873

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.65  E-value=9.3e-17  Score=135.33  Aligned_cols=100  Identities=18%  Similarity=0.257  Sum_probs=82.7

Q ss_pred             CCHHHHhcCCCceEEEECCCCCCCCC-hhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh-HHHhcCCCC-CCcccc
Q 045521            3 ADAELIDSLPKLEIVATCSAGLDKID-LVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR-FVRSEDGEM-GYKLTT   79 (204)
Q Consensus         3 i~~~~l~~~~~Lk~I~~~~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~-~~~~~~w~~-~~~~~~   79 (204)
                      +++++++.+|++|+|+   +|+|++| +++++++||.|+|+|+++  ++         ++.|+ ...+|.|.. ....+.
T Consensus        88 ~~~~~l~~~~~l~~i~---~g~~~~d~~~~~~~~gi~v~~~~~~~--~v---------~~~r~~~~~~g~~~~~~~~~~~  153 (300)
T 2rir_A           88 LKQDHLDRTPAHCVIF---SGISNAYLENIAAQAKRKLVKLFERD--DI---------AIYNSIPTVEGTIMLAIQHTDY  153 (300)
T ss_dssp             CCHHHHHTSCTTCEEE---ESSCCHHHHHHHHHTTCCEEEGGGSH--HH---------HHHHHHHHHHHHHHHHHHTCSS
T ss_pred             chHHHHhhcCCCCEEE---EecCCHHHHHHHHHCCCEEEeecCCC--ce---------EEEcCccHHHHHHHHHHHhcCC
Confidence            7899999999999998   8999999 999999999999999874  33         22344 233555642 012357


Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +++|+||||||+|+||+.+|+++++|||+|++++|+.
T Consensus       154 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          154 TIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             CSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            8999999999999999999999999999999999875

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=99.61  E-value=7.7e-16  Score=133.80  Aligned_cols=169  Identities=17%  Similarity=0.176  Sum_probs=117.8

Q ss_pred             CCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEE----------eCCCCCchhHHHHHHHHHHHHH-hh--HHHh
Q 045521            2 GADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVT----------NTPDVLTDDVADAAIGLTLAVL-RR--FVRS   68 (204)
Q Consensus         2 ~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~----------n~~~~~~~~vAE~~l~~~L~~~-R~--~~~~   68 (204)
                      ++++++....|+..++.....++|...++++.++||++.          |.|.+  .++||++..+++.+. |+  ..+.
T Consensus        77 p~~~e~~~l~~~~~l~~~~~~~~~~~~l~~l~~~gi~~ia~e~v~~~~~~~p~~--s~~ae~ag~~a~~~a~r~l~~~~~  154 (377)
T 2vhw_A           77 PIAAEYGRLRHGQILFTFLHLAASRACTDALLDSGTTSIAYETVQTADGALPLL--APMSEVAGRLAAQVGAYHLMRTQG  154 (377)
T ss_dssp             CCGGGGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTT--HHHHHHHHHHHHHHHHHHTSGGGT
T ss_pred             CChHHHhhcCCCCEEEEEecccCCHHHHHHHHHcCCeEEEeeeccccCCCcccc--CchHHHHHHHHHHHHHHHHHHhcC
Confidence            455677777788888888888899999999999999997          55554  466799985555544 66  3444


Q ss_pred             cCCCCCCccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC--------CCC-----------------C
Q 045521           69 EDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN--------TKY-----------------K  123 (204)
Q Consensus        69 ~~w~~~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~--------~~~-----------------~  123 (204)
                      +.|..... ..++.|+||+|+|+|.||+.+++++++||++|++++++....        ...                 +
T Consensus       155 g~~~~~~~-~~~l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aD  233 (377)
T 2vhw_A          155 GRGVLMGG-VPGVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRAD  233 (377)
T ss_dssp             SCCCCTTC-BTTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCS
T ss_pred             CCcccccC-CCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCC
Confidence            54431011 236899999999999999999999999999999999864320        000                 0


Q ss_pred             ---------c----ceeCHHHHHHHHHcCCceEEEeeC-------CCC-CCCCC-CCcCCCCceE--EcccCCCCcHH
Q 045521          124 ---------G----ALVDESELVSALLEDRLAAAVLDV-------FEH-EPQVP-EELFGLENVV--LLPHAASGTEE  177 (204)
Q Consensus       124 ---------G----~lvd~~aL~~aL~~g~i~ga~lDV-------~~~-EP~~~-~~l~~~~nvi--lTPH~a~~t~~  177 (204)
                               +    .++.++ .++.++.|   +..+|+       |+. ||.+. .|+|..+|++  +|||+++.+..
T Consensus       234 vVi~~~~~p~~~t~~li~~~-~l~~mk~g---~~iV~va~~~Ggv~e~~ep~~~~~~~~~~~~v~i~~~phl~~~~~~  307 (377)
T 2vhw_A          234 LVIGAVLVPGAKAPKLVSNS-LVAHMKPG---AVLVDIAIDQGGCFEGSRPTTYDHPTFAVHDTLFYCVANMPASVPK  307 (377)
T ss_dssp             EEEECCCCTTSCCCCCBCHH-HHTTSCTT---CEEEEGGGGTTCSBTTCCCBCSSSCEEEETTEEEECBTTGGGGSHH
T ss_pred             EEEECCCcCCCCCcceecHH-HHhcCCCC---cEEEEEecCCCCccccccCCCCCCCEEEECCEEEEecCCcchhhHH
Confidence                     1    123333 33445544   334454       333 77654 4899999998  99999998876

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=99.47  E-value=4.2e-15  Score=130.22  Aligned_cols=183  Identities=13%  Similarity=0.202  Sum_probs=134.6

Q ss_pred             CCceEEEECCCCCCCCChhhHh-----hCCcEEEeCCCCCchhHHHHHHHHHHHHHhhH-----HHhcCCCCCC---ccc
Q 045521           12 PKLEIVATCSAGLDKIDLVKCK-----EKGIQVTNTPDVLTDDVADAAIGLTLAVLRRF-----VRSEDGEMGY---KLT   78 (204)
Q Consensus        12 ~~Lk~I~~~~~G~d~id~~~~~-----~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~-----~~~~~w~~~~---~~~   78 (204)
                      +.+++|...++|+|++++.+..     ++++.+++.+|. ..+++++.+..++.+.|+.     ...+.|.-.+   ...
T Consensus        80 ~a~~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~-~~~~~~~~~~~a~~~~k~v~~~~~~~~~~~s~a~~av~~a  158 (404)
T 1gpj_A           80 EAVRHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGT-LDEALKIVFRRAINLGKRAREETRISEGAVSIGSAAVELA  158 (404)
T ss_dssp             HHHHHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHHHHSSTTCSCCSHHHHHHHHH
T ss_pred             hHhhhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCC-chHHHHHHHHHHhhhhccCcchhhhcCCCccHHHHHHHHH
Confidence            4578888999999999999887     788999998887 5789999999999999881     1123443100   111


Q ss_pred             ----cccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCCCCC-----------CCCC-------------------
Q 045521           79 ----TKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAEKPN-----------TKYK-------------------  123 (204)
Q Consensus        79 ----~~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~~~~-----------~~~~-------------------  123 (204)
                          .++.|++|+|+|+|.||+.+++.++.+|+ +|++++|+....           ..+.                   
T Consensus       159 ~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~~  238 (404)
T 1gpj_A          159 ERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAP  238 (404)
T ss_dssp             HHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSS
T ss_pred             HHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCCC
Confidence                14799999999999999999999999999 999999875321           0011                   


Q ss_pred             cceeCHHHHHH-HHHc--CCceEEEeeCCCCCCCC-CCCcCCCCceEE--cccCCCCcHHHHH----------HHHHHHH
Q 045521          124 GALVDESELVS-ALLE--DRLAAAVLDVFEHEPQV-PEELFGLENVVL--LPHAASGTEETRK----------ATADIVI  187 (204)
Q Consensus       124 G~lvd~~aL~~-aL~~--g~i~ga~lDV~~~EP~~-~~~l~~~~nvil--TPH~a~~t~~~~~----------~~~~~~~  187 (204)
                      ..+++.+.+-. .++.  +. ....+|+..  |.+ +++++++|||++  +||++..+.+..+          .+..+.+
T Consensus       239 ~~~~~~~~l~~~~lk~r~~~-~~v~vdia~--P~~i~~~l~~l~~v~l~d~d~l~~~~~~~~~~r~~~~~~~~~li~q~~  315 (404)
T 1gpj_A          239 HPVIHVDDVREALRKRDRRS-PILIIDIAN--PRDVEEGVENIEDVEVRTIDDLRVIARENLERRRKEIPKVEKLIEEEL  315 (404)
T ss_dssp             SCCBCHHHHHHHHHHCSSCC-CEEEEECCS--SCSBCTTGGGSTTEEEEEHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             CceecHHHHHHHHHhccCCC-CEEEEEccC--CCCCCccccccCCeEEEeHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33456566554 4542  22 236778875  543 458999999999  9999988887654          6777888


Q ss_pred             HHHHHHHcCCC
Q 045521          188 ENLEACFLNKP  198 (204)
Q Consensus       188 ~nl~~~~~g~~  198 (204)
                      +++..|+.+.+
T Consensus       316 ~~f~~w~~~~~  326 (404)
T 1gpj_A          316 STVEEELEKLK  326 (404)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcc
Confidence            88888887643

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=99.35  E-value=1.3e-13  Score=119.36  Aligned_cols=192  Identities=18%  Similarity=0.146  Sum_probs=117.0

Q ss_pred             HHHhcC-CCceEEEECCCCCCCCChhhHhhCCcEEE---eCCCC-Cc----hhHHHHHH--HHHHHH--HhhHHH-hcCC
Q 045521            6 ELIDSL-PKLEIVATCSAGLDKIDLVKCKEKGIQVT---NTPDV-LT----DDVADAAI--GLTLAV--LRRFVR-SEDG   71 (204)
Q Consensus         6 ~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~v~---n~~~~-~~----~~vAE~~l--~~~L~~--~R~~~~-~~~w   71 (204)
                      +.++.+ |+.++|.....+.|..+++++.++||++.   +.+.. ..    .+++|.+-  +.++++  +++... ++.|
T Consensus        78 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gi~~ia~e~~~~~~~~~~~l~~~s~~ag~~av~~a~~~l~~~~~g~~~~  157 (369)
T 2eez_A           78 EEYGFLREGLILFTYLHLAADRGLTEAMLRSGVTGIAYETVQLPDGTLPLLVPMSEVAGRMAPQVGAQFLEKPKGGRGVL  157 (369)
T ss_dssp             GGGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTCCCTTTHHHHHHHHHHHHHHHHHHTSGGGTSCCCC
T ss_pred             HHHhhcCCCcEEEEEecccCCHHHHHHHHHCCCeEEEeeccccccCCeeecccchHHHHHHHHHHHHHHHHHhcCCCcee
Confidence            346665 78999999999999999999999999998   44432 11    44555443  333322  222211 1122


Q ss_pred             CCCCccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC------C--C-----------------CC---
Q 045521           72 EMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN------T--K-----------------YK---  123 (204)
Q Consensus        72 ~~~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~------~--~-----------------~~---  123 (204)
                      ..  . ..++.+++|+|+|.|.||+.++++++++|++|++++++....      .  .                 .+   
T Consensus       158 ~~--~-~~~l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi  234 (369)
T 2eez_A          158 LG--G-VPGVAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLI  234 (369)
T ss_dssp             TT--C-BTBBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEE
T ss_pred             cC--C-CCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEE
Confidence            21  1 246899999999999999999999999999999998864210      0  0                 00   


Q ss_pred             ---c-------ceeCHHHHHHHHHcCC-c------eEEEeeCCCCCCCCC-CCcCCCCceE---------EcccCCCC--
Q 045521          124 ---G-------ALVDESELVSALLEDR-L------AAAVLDVFEHEPQVP-EELFGLENVV---------LLPHAASG--  174 (204)
Q Consensus       124 ---G-------~lvd~~aL~~aL~~g~-i------~ga~lDV~~~EP~~~-~~l~~~~nvi---------lTPH~a~~--  174 (204)
                         |       .++.++ .++.++.|. |      .|-++|++  ||.+. .|++..+|+.         .+||+++.  
T Consensus       235 ~~~g~~~~~~~~li~~~-~l~~mk~gg~iV~v~~~~gg~~d~~--ep~~~~~~~~~~~~v~~~~v~~lp~~~p~~as~~~  311 (369)
T 2eez_A          235 GAVLVPGAKAPKLVTRD-MLSLMKEGAVIVDVAVDQGGCVETI--RPTTHAEPTYVVDGVVHYGVANMPGAVPRTSTFAL  311 (369)
T ss_dssp             ECCC-------CCSCHH-HHTTSCTTCEEEECC---------------------CEETTEEEECCSCSGGGSHHHHHHHH
T ss_pred             ECCCCCccccchhHHHH-HHHhhcCCCEEEEEecCCCCCCCcc--cCCCCCCCEEEECCEEEEeeCCcchhcHHHHHHHH
Confidence               1       122333 334444432 1      11236666  55443 4788889999         88998875  


Q ss_pred             cHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 045521          175 TEETRKATADIVIENLEACFLNKPLLTPV  203 (204)
Q Consensus       175 t~~~~~~~~~~~~~nl~~~~~g~~~~~~v  203 (204)
                      +.+.+..+.+.+.+++..++.++.+.+.+
T Consensus       312 ~~~~~~~l~~l~~~g~~~~~~~~~l~~~~  340 (369)
T 2eez_A          312 TNQTLPYVLKLAEKGLDALLEDAALLKGL  340 (369)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHSCHHHHTTE
T ss_pred             HHHHHHHHHHHHhcChhhhhcChHHhcCE
Confidence            45667888888888887787776555443

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=99.13  E-value=1.2e-11  Score=108.32  Aligned_cols=109  Identities=19%  Similarity=0.192  Sum_probs=76.6

Q ss_pred             CHHHHhcC-CCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHh--------hHHHh-----c
Q 045521            4 DAELIDSL-PKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR--------RFVRS-----E   69 (204)
Q Consensus         4 ~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R--------~~~~~-----~   69 (204)
                      +++.++.+ |++++|+..+.|+|+++++++.++||++.+.     +.|+|++.++.|.+++        +.++.     +
T Consensus        83 ~~~~i~~l~~~~~li~~~~~~~d~~~~~al~~~gI~v~~~-----e~v~~~~~a~~l~~l~~~a~~ag~~av~~~~~~~~  157 (401)
T 1x13_A           83 LDDEIALLNPGTTLVSFIWPAQNPELMQKLAERNVTVMAM-----DSVPRISRAQSLDALSSMANIAGYRAIVEAAHEFG  157 (401)
T ss_dssp             CHHHHTTCCTTCEEEECCCGGGCHHHHHHHHHTTCEEEEG-----GGCCCSGGGGGGCHHHHHHHHHHHHHHHHHHHHCS
T ss_pred             CHHHHHHhcCCCcEEEEecCCCCHHHHHHHHHCCCEEEEe-----ehhhhhhhhcccchHHHHHHHHHHHHHHHHHHhcc
Confidence            45778886 7899999999999999999999999999753     3333333222111111        11111     2


Q ss_pred             CCCC-CCccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           70 DGEM-GYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        70 ~w~~-~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .|.. ......++.|++|+|+|+|.||+.+++++++||++|+++|+++.
T Consensus       158 ~~~~~~~~~~g~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~  206 (401)
T 1x13_A          158 RFFTGQITAAGKVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  206 (401)
T ss_dssp             SCSSCEEETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGG
T ss_pred             cccCCceeeccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            2211 00001158899999999999999999999999999999998754

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=98.98  E-value=4e-10  Score=97.91  Aligned_cols=112  Identities=10%  Similarity=0.090  Sum_probs=76.4

Q ss_pred             CHHHHhcCC-CceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHH-----hhHHHhc-----CCC
Q 045521            4 DAELIDSLP-KLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVL-----RRFVRSE-----DGE   72 (204)
Q Consensus         4 ~~~~l~~~~-~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~-----R~~~~~~-----~w~   72 (204)
                      +++.++.++ ++++|.....+.|+.+++++.++||++++. .+..+.+++..+. +|+..     +..+..+     .|.
T Consensus        83 ~~~~i~~l~~~~~~i~~~~~~~~~~~~~~~~~~gi~~~~~-e~~~~~~~~~~l~-~l~~~a~~ag~~av~~~~~~~~~~~  160 (384)
T 1l7d_A           83 GTDEVALIKEGAVLMCHLGALTNRPVVEALTKRKITAYAM-ELMPRISRAQSMD-ILSSQSNLAGYRAVIDGAYEFARAF  160 (384)
T ss_dssp             SCCGGGGSCTTCEEEEECCGGGCHHHHHHHHHTTCEEEEG-GGCCCSGGGGGGC-HHHHHHHHHHHHHHHHHHHHCSSCS
T ss_pred             CHHHHHhhccCCEEEEEecccCCHHHHHHHHHCCCEEEEe-ccccccccccccc-hhhHHHHHHHHHHHHHHHHHhhhcc
Confidence            678889886 689999999999999999999999999984 2222111111111 11111     1111222     222


Q ss_pred             CCCccc-cccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           73 MGYKLT-TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        73 ~~~~~~-~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .....+ .++.|+||+|+|+|.||+.+++.+++||++|+++++++.
T Consensus       161 ~~~~~~~~~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~  206 (384)
T 1l7d_A          161 PMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA  206 (384)
T ss_dssp             SCEEETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             cchhccCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            100001 368999999999999999999999999999999998754

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=98.79  E-value=1e-08  Score=90.17  Aligned_cols=90  Identities=18%  Similarity=0.285  Sum_probs=61.1

Q ss_pred             ECCCCCCCCC-hhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhhHHHhcCCCCCCccccccCCCEEEEEeCChHHHH
Q 045521           19 TCSAGLDKID-LVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTKISGRSVGIIGLGRIGMA   97 (204)
Q Consensus        19 ~~~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~w~~~~~~~~~l~g~tvGIvG~G~IG~~   97 (204)
                      -+++|+..+. +.+..+.+|+|.|++.....+..+...+..-.+.....+.        .+.++.||||||+|+|+||+.
T Consensus       154 eTttGv~rL~~~~~~g~L~iPVinvndsvtk~~~Dn~~Gt~~slldgi~ra--------tg~~L~GktVgIiG~G~IG~~  225 (436)
T 3h9u_A          154 ETTTGVKNLYKRLQRGKLTIPAMNVNDSVTKSKFDNLYGCRESLVDGIKRA--------TDVMIAGKTACVCGYGDVGKG  225 (436)
T ss_dssp             CSHHHHHHHHHHHHHTCCCSCEEECTTSHHHHTTHHHHHHHHHHHHHHHHH--------HCCCCTTCEEEEECCSHHHHH
T ss_pred             ccCcChHHHHHHHHcCCCCCceEeechhhhhhhhhccccchHHHHHHHHHh--------cCCcccCCEEEEEeeCHHHHH
Confidence            3455655442 3344578999999986555553333333222222222111        245799999999999999999


Q ss_pred             HHHHHhhcCCEEEEEcCCC
Q 045521           98 VAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        98 va~~~~~fg~~V~~~~r~~  116 (204)
                      +|++|++|||+|+++++++
T Consensus       226 vA~~Lka~Ga~Viv~D~~p  244 (436)
T 3h9u_A          226 CAAALRGFGARVVVTEVDP  244 (436)
T ss_dssp             HHHHHHHTTCEEEEECSCH
T ss_pred             HHHHHHHCCCEEEEECCCh
Confidence            9999999999999999864

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=98.56  E-value=1.3e-07  Score=83.28  Aligned_cols=90  Identities=14%  Similarity=0.185  Sum_probs=56.5

Q ss_pred             ECCCCCCCCC-hhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhhHHHhcCCCCCCccccccCCCEEEEEeCChHHHH
Q 045521           19 TCSAGLDKID-LVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTKISGRSVGIIGLGRIGMA   97 (204)
Q Consensus        19 ~~~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~w~~~~~~~~~l~g~tvGIvG~G~IG~~   97 (204)
                      -+++|+-.+- ........+++.|+.+...    .+-+-......+... .+-. +  ..+.++.||||||+|+|+||+.
T Consensus       190 eTtTGv~rL~~m~~~g~L~~PvinVnds~t----K~~fDn~yG~~eslv-dgI~-R--atg~~L~GKTVgVIG~G~IGr~  261 (464)
T 3n58_A          190 ETTTGVNRLYQLQKKGLLPFPAINVNDSVT----KSKFDNKYGCKESLV-DGIR-R--GTDVMMAGKVAVVCGYGDVGKG  261 (464)
T ss_dssp             CSHHHHHHHHHHHHHTCCCSCEEECTTSHH----HHTTHHHHHHHHHHH-HHHH-H--HHCCCCTTCEEEEECCSHHHHH
T ss_pred             ccccchHHHHHHHHcCCCCCCEEeeccHhh----hhhhhhhhcchHHHH-HHHH-H--hcCCcccCCEEEEECcCHHHHH
Confidence            3455655431 2223346789999865433    333333222221100 0000 0  1245799999999999999999


Q ss_pred             HHHHHhhcCCEEEEEcCCC
Q 045521           98 VAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        98 va~~~~~fg~~V~~~~r~~  116 (204)
                      +|+++++|||+|+++++.+
T Consensus       262 vA~~lrafGa~Viv~d~dp  280 (464)
T 3n58_A          262 SAQSLAGAGARVKVTEVDP  280 (464)
T ss_dssp             HHHHHHHTTCEEEEECSSH
T ss_pred             HHHHHHHCCCEEEEEeCCc
Confidence            9999999999999998754

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=98.48  E-value=3.1e-07  Score=80.62  Aligned_cols=89  Identities=18%  Similarity=0.280  Sum_probs=57.3

Q ss_pred             CCCCCCCCC-hhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhhHHHhcCCCCCCccccccCCCEEEEEeCChHHHHH
Q 045521           20 CSAGLDKID-LVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAV   98 (204)
Q Consensus        20 ~~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~w~~~~~~~~~l~g~tvGIvG~G~IG~~v   98 (204)
                      +++|+-.+- .....+..++|.|+.+....+.-+...+.--.+.....+.        .+..+.||||+|+|+|.||+.+
T Consensus       164 TttGv~rl~~~~~~g~L~~Pvi~vnds~tK~~fDn~yGt~~s~~~gi~ra--------t~~~L~GktV~ViG~G~IGk~v  235 (435)
T 3gvp_A          164 SVTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILDGLKRT--------TDMMFGGKQVVVCGYGEVGKGC  235 (435)
T ss_dssp             CHHHHHHHTCC--CCCCCSCEEECTTCHHHHHHHTHHHHHHHHHHHHHHH--------HCCCCTTCEEEEECCSHHHHHH
T ss_pred             cchhHHHHHHHHHcCCCCCCEEEecchhhhhhhhhhhhhHHHHHHHHHHh--------hCceecCCEEEEEeeCHHHHHH
Confidence            445554331 2223356899999987655554442222111111111111        2457999999999999999999


Q ss_pred             HHHHhhcCCEEEEEcCCC
Q 045521           99 AKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        99 a~~~~~fg~~V~~~~r~~  116 (204)
                      |++|++|||+|+++++++
T Consensus       236 A~~Lra~Ga~Viv~D~dp  253 (435)
T 3gvp_A          236 CAALKAMGSIVYVTEIDP  253 (435)
T ss_dssp             HHHHHHTTCEEEEECSCH
T ss_pred             HHHHHHCCCEEEEEeCCh
Confidence            999999999999999865

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=98.23  E-value=4e-06  Score=72.01  Aligned_cols=89  Identities=15%  Similarity=0.229  Sum_probs=61.9

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCC-------C---C--------CCC-------cceeCHHHHHH
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKP-------N---T--------KYK-------GALVDESELVS  134 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~-------~---~--------~~~-------G~lvd~~aL~~  134 (204)
                      +|.||||+|+|+|+||+.+|+++++|||+|+++|++...       .   .        ..+       +..|+++.+ +
T Consensus       172 ~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~v~~~ell~~~~DIliP~A~~~~I~~~~~-~  250 (355)
T 1c1d_A          172 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAPCAMGGVITTEVA-R  250 (355)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGGGGCCCSEEEECSCSCCBCHHHH-H
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEEeChHHhhcCccceecHhHHHhhcCHHHH-h
Confidence            799999999999999999999999999999988865320       0   0        001       667777776 3


Q ss_pred             HHHcCCceEEEeeCCCCCCCCC---CCcCCCCceEEcccCCCC
Q 045521          135 ALLEDRLAAAVLDVFEHEPQVP---EELFGLENVVLLPHAASG  174 (204)
Q Consensus       135 aL~~g~i~ga~lDV~~~EP~~~---~~l~~~~nvilTPH~a~~  174 (204)
                      .|+..-|.    ..- +.|+.+   ...+...++++.||...+
T Consensus       251 ~lk~~iVi----e~A-N~p~t~~eA~~~L~~~gIlv~Pd~~aN  288 (355)
T 1c1d_A          251 TLDCSVVA----GAA-NNVIADEAASDILHARGILYAPDFVAN  288 (355)
T ss_dssp             HCCCSEEC----CSC-TTCBCSHHHHHHHHHTTCEECCHHHHT
T ss_pred             hCCCCEEE----ECC-CCCCCCHHHHHHHHhCCEEEECCeEEc
Confidence            44432222    222 566544   256667899999986543

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=97.99  E-value=2e-05  Score=70.20  Aligned_cols=90  Identities=16%  Similarity=0.217  Sum_probs=57.2

Q ss_pred             ECCCCCCCCC-hhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhhHHHhcCCCCCCccccccCCCEEEEEeCChHHHH
Q 045521           19 TCSAGLDKID-LVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTKISGRSVGIIGLGRIGMA   97 (204)
Q Consensus        19 ~~~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~w~~~~~~~~~l~g~tvGIvG~G~IG~~   97 (204)
                      -+++|+..+. +.+.....|+|.|+.+....+.-+...+.--.+.....+.        .+..|.||+++|+|+|.||+.
T Consensus       208 eTttGv~rL~~~~~~g~L~iPvinvnDs~tK~~fDn~yGt~~sl~dgi~r~--------tg~~L~GKtVvVtGaGgIG~a  279 (488)
T 3ond_A          208 ETTTGVKRLYQMQANGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRA--------TDVMIAGKVAVVAGYGDVGKG  279 (488)
T ss_dssp             CSHHHHHHHHHHHHTTCCCSCEEECTTSHHHHTTHHHHHHHHHHHHHHHHH--------HCCCCTTCEEEEECCSHHHHH
T ss_pred             cccccHHHHHHHHHcCCCCCceecccchhhhhHhhhhccccHHHHHHHHHH--------cCCcccCCEEEEECCCHHHHH
Confidence            3556666542 1222356799999977544432221111111111111111        234689999999999999999


Q ss_pred             HHHHHhhcCCEEEEEcCCC
Q 045521           98 VAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        98 va~~~~~fg~~V~~~~r~~  116 (204)
                      +|++|+++|++|+++++++
T Consensus       280 iA~~Laa~GA~Viv~D~~~  298 (488)
T 3ond_A          280 CAAALKQAGARVIVTEIDP  298 (488)
T ss_dssp             HHHHHHHTTCEEEEECSCH
T ss_pred             HHHHHHHCCCEEEEEcCCH
Confidence            9999999999999998864

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=97.96  E-value=2.7e-06  Score=69.69  Aligned_cols=88  Identities=18%  Similarity=0.122  Sum_probs=65.1

Q ss_pred             CCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhhHHHhcCCCCCCcccccc
Q 045521            2 GADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTKI   81 (204)
Q Consensus         2 ~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~w~~~~~~~~~l   81 (204)
                      ++.++++..++++.-++....|+|.++.    +.|-    ..|++++.     .+++.++.|.             +.++
T Consensus        62 P~k~~i~~~~~~l~~~a~~~gavn~i~~----~~g~----~~g~ntd~-----~g~~~~l~~~-------------~~~l  115 (263)
T 2d5c_A           62 PLKEAALAHLDWVSPEAQRIGAVNTVLQ----VEGR----LFGFNTDA-----PGFLEALKAG-------------GIPL  115 (263)
T ss_dssp             TCTTGGGGGCSEECHHHHHHTCCCEEEE----ETTE----EEEECCHH-----HHHHHHHHHT-------------TCCC
T ss_pred             cCHHHHHHHHHHHhHHHHHhCCCCcEEc----cCCe----EEEeCCCH-----HHHHHHHHHh-------------CCCC
Confidence            5667778888888877778888888864    3342    23455543     2444444431             2368


Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +| +++|||+|.+|+.+++.+..+|++|.+++|+.
T Consensus       116 ~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~  149 (263)
T 2d5c_A          116 KG-PALVLGAGGAGRAVAFALREAGLEVWVWNRTP  149 (263)
T ss_dssp             CS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            89 99999999999999999999999999999874

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=97.76  E-value=3e-05  Score=66.78  Aligned_cols=89  Identities=16%  Similarity=0.249  Sum_probs=59.5

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCC-------------------CCC-------cceeCHHHHH
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNT-------------------KYK-------GALVDESELV  133 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~-------------------~~~-------G~lvd~~aL~  133 (204)
                      +|.||||+|+|+|++|+.+|++|..+|++|+++|++.....                   ..+       +.+|+.+. +
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v~~~~ll~~~~DIvip~a~~~~I~~~~-~  248 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAIYGVTCDIFAPCALGAVLNDFT-I  248 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCGGGTTTCCCSEEEECSCSCCBSTTH-H
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEChHHHhccCCcEeeccchHHHhCHHH-H
Confidence            69999999999999999999999999999998887532100                   001       55666654 3


Q ss_pred             HHHHcCCceEEEeeCCCCCCCCC---CCcCCCCceEEcccCCCC
Q 045521          134 SALLEDRLAAAVLDVFEHEPQVP---EELFGLENVVLLPHAASG  174 (204)
Q Consensus       134 ~aL~~g~i~ga~lDV~~~EP~~~---~~l~~~~nvilTPH~a~~  174 (204)
                      +.|...     .++--.+.|..+   ..++...++++.||...+
T Consensus       249 ~~lg~~-----iV~e~An~p~t~~ea~~~L~~~Gi~~~Pd~~~N  287 (364)
T 1leh_A          249 PQLKAK-----VIAGSADNQLKDPRHGKYLHELGIVYAPDYVIN  287 (364)
T ss_dssp             HHCCCS-----EECCSCSCCBSSHHHHHHHHHHTCEECCHHHHT
T ss_pred             HhCCCc-----EEEeCCCCCcccHHHHHHHHhCCCEEecceeec
Confidence            444221     222233556543   145566789999987643

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=97.74  E-value=3e-05  Score=62.74  Aligned_cols=41  Identities=20%  Similarity=0.375  Sum_probs=33.1

Q ss_pred             cccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           77 LTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        77 ~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      ...++.+++|||||+|.+|+.+|+.|...|.+|.+++|++.
T Consensus        13 ~~~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~   53 (245)
T 3dtt_A           13 ENLYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPK   53 (245)
T ss_dssp             ------CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             cccccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            35689999999999999999999999999999999998754

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=97.60  E-value=2e-05  Score=65.07  Aligned_cols=38  Identities=18%  Similarity=0.238  Sum_probs=34.9

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .++.+++++|||.|.+|+.+++.|...|++|.+++|+.
T Consensus       125 ~~~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~  162 (275)
T 2hk9_A          125 PEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTK  162 (275)
T ss_dssp             TTGGGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSH
T ss_pred             CCcCCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCH
Confidence            35789999999999999999999999999999999875

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=97.51  E-value=0.00014  Score=63.60  Aligned_cols=58  Identities=24%  Similarity=0.237  Sum_probs=43.8

Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcce-----eCHHHHHHHHHc-CCce
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGAL-----VDESELVSALLE-DRLA  142 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~l-----vd~~aL~~aL~~-g~i~  142 (204)
                      +.+++|+||.|.|+|++|+.+|++|..+|++|+.++.+.       |.+     +|.++|.+..++ |.+.
T Consensus       216 g~~l~g~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~-------G~iyd~~GlD~~~l~~~~~~~g~i~  279 (424)
T 3k92_A          216 GIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDAN-------GGLYNPDGLDIPYLLDKRDSFGMVT  279 (424)
T ss_dssp             TCCGGGCEEEEECCSHHHHHHHHHHHHHTCEEEEEECSS-------CEEECTTCCCHHHHHHHCCSSSCCG
T ss_pred             CCCcccCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC-------CcEECCCCCCHHHHHHHHHHhCCCC
Confidence            457999999999999999999999999999997665543       333     456676665443 4443

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=97.48  E-value=0.00029  Score=60.52  Aligned_cols=59  Identities=20%  Similarity=0.303  Sum_probs=47.5

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC-CC-----CCcceeCHHHHHHHHHc
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN-TK-----YKGALVDESELVSALLE  138 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~-~~-----~~G~lvd~~aL~~aL~~  138 (204)
                      -+.||||+|+|.|.+|+.+++.++.+|++|+++++.+... ..     +.....|.++|.+.++.
T Consensus        11 ~~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~   75 (389)
T 3q2o_A           11 ILPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEI   75 (389)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHh
Confidence            4789999999999999999999999999999998765321 11     11666788888888876

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=97.42  E-value=0.00013  Score=63.84  Aligned_cols=39  Identities=28%  Similarity=0.354  Sum_probs=34.5

Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +.++.|+||.|.|+|++|+.++++|..+|++|+.++.+.
T Consensus       205 g~~l~gk~vaVqG~GnVG~~aa~~L~e~GakVVavsD~~  243 (421)
T 1v9l_A          205 WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDIN  243 (421)
T ss_dssp             HSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSS
T ss_pred             CCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            457999999999999999999999999999998665543

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=97.41  E-value=0.00063  Score=59.58  Aligned_cols=66  Identities=18%  Similarity=0.244  Sum_probs=45.1

Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCC---CCCCCcceeCHHHHHHHHHc-CCceE
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKP---NTKYKGALVDESELVSALLE-DRLAA  143 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~---~~~~~G~lvd~~aL~~aL~~-g~i~g  143 (204)
                      +.++.|+||.|.|+|++|+.+|++|..+|++|++++.+...   ..-|.-.=+|.++|.+..++ |.+.+
T Consensus       207 g~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~  276 (421)
T 2yfq_A          207 GIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIG  276 (421)
T ss_dssp             TCCGGGSCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC---
T ss_pred             CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCccc
Confidence            45789999999999999999999999999999976554421   11111112566788776543 55543

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.41  E-value=0.00052  Score=50.19  Aligned_cols=36  Identities=14%  Similarity=0.133  Sum_probs=31.5

Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ...+++.|+|+|.+|+.+++.|...|.+|+.+++.+
T Consensus         4 ~~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            4 NGRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             --CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            346789999999999999999999999999998853

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=97.40  E-value=0.00013  Score=63.02  Aligned_cols=38  Identities=16%  Similarity=0.239  Sum_probs=35.5

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .+.+++|+|+|+|.||+.+++.+++||++|+++|+++.
T Consensus       181 ~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  218 (381)
T 3p2y_A          181 TVKPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPE  218 (381)
T ss_dssp             EECCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGG
T ss_pred             CcCCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            57899999999999999999999999999999998753

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=97.40  E-value=0.00094  Score=58.39  Aligned_cols=59  Identities=31%  Similarity=0.443  Sum_probs=44.5

Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcce-----eCHHHHHHHHHc-CCceE
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGAL-----VDESELVSALLE-DRLAA  143 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~l-----vd~~aL~~aL~~-g~i~g  143 (204)
                      +.+|.|+||.|.|+|++|+.+|++|...|++|+.++.+.       |.+     +|.++|.+..++ |.+.+
T Consensus       213 g~~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~-------G~i~dp~Gld~~~l~~~~~~~g~v~~  277 (419)
T 3aoe_E          213 GLDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSM-------GGMYAPEGLDVAEVLSAYEATGSLPR  277 (419)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETT-------EEEECTTCCCHHHHHHHHHHHSSCSC
T ss_pred             CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCC-------CeEECCCCCCHHHHHHHHHhhCCcce
Confidence            457899999999999999999999999999998554432       233     467777765544 44543

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.36  E-value=0.00022  Score=53.33  Aligned_cols=41  Identities=24%  Similarity=0.374  Sum_probs=34.3

Q ss_pred             cccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           77 LTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        77 ~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      +...+.+++|.|+|+|.+|+.+++.|+..|.+|+++++++.
T Consensus        13 ~~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~   53 (155)
T 2g1u_A           13 MSKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY   53 (155)
T ss_dssp             ----CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             hhcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            34567899999999999999999999999999999988653

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=97.34  E-value=0.00027  Score=55.79  Aligned_cols=39  Identities=23%  Similarity=0.433  Sum_probs=32.0

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .++..++|+|||+|.+|+.+|+.+...|.+|.+++|+..
T Consensus        15 ~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           15 LYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             -----CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            468899999999999999999999999999999998754

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=97.31  E-value=0.00044  Score=60.88  Aligned_cols=87  Identities=18%  Similarity=0.258  Sum_probs=56.9

Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcce-----eCHHHHHHHHH-----cCCceEEEee
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGAL-----VDESELVSALL-----EDRLAAAVLD  147 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~l-----vd~~aL~~aL~-----~g~i~ga~lD  147 (204)
                      +.+|.|+||.|-|+|++|+.+|++|...|++|+..+.+.       |.+     +|.++|.+..+     .|++..++- 
T Consensus       230 ~~~l~Gk~vaVQG~GnVG~~aa~~L~e~GakvVavsD~~-------G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~-  301 (450)
T 4fcc_A          230 GMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSS-------GTVVDESGFTKEKLARLIEIKSSRDGRVADYAK-  301 (450)
T ss_dssp             TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETT-------EEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHH-
T ss_pred             CCCcCCCEEEEeCCChHHHHHHHHHHhcCCeEEEEecCC-------ceEEeCCCCCHHHHHHHHHHhcccCCccccccc-
Confidence            457899999999999999999999999999998876544       444     45566655443     233332210 


Q ss_pred             CCCCCCCCCCCcCCCCceEEcccCC
Q 045521          148 VFEHEPQVPEELFGLENVVLLPHAA  172 (204)
Q Consensus       148 V~~~EP~~~~~l~~~~nvilTPH~a  172 (204)
                      -+..+....+.+|+.|--|+.|=--
T Consensus       302 ~~g~~~~~~~~i~~~~~DI~iPcAl  326 (450)
T 4fcc_A          302 EFGLVYLEGQQPWSVPVDIALPCAT  326 (450)
T ss_dssp             HHTCEEEETCCGGGSCCSEEEECSC
T ss_pred             cCCcEEecCcccccCCccEEeeccc
Confidence            0111222234577777777777543

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=97.29  E-value=0.00013  Score=64.30  Aligned_cols=88  Identities=11%  Similarity=0.143  Sum_probs=57.7

Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcce-----eCHHHHHHH--HHc---CCceEEEee
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGAL-----VDESELVSA--LLE---DRLAAAVLD  147 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~l-----vd~~aL~~a--L~~---g~i~ga~lD  147 (204)
                      +.++.|+||.|-|+|++|+.+|++|...|++|+.++.+.       |.+     +|.++|.+.  +++   +++..+.-.
T Consensus       234 g~~l~g~~VaVQG~GnVG~~aa~~L~e~GakvVavsD~~-------G~iyd~~Gld~~~l~~~~~~k~~~~~~v~~~~~~  306 (456)
T 3r3j_A          234 NDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLTMSDSN-------GYILEPNGFTKEQLNYIMDIKNNQRLRLKEYLKY  306 (456)
T ss_dssp             TCCSTTCCEEEECCSHHHHHHHHHHHHHTCCBCCEECSS-------CEEECTTCCCHHHHHHHHHHHHTSCCCGGGGGGT
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC-------CcEECCCCCCHHHHHHHHHHHHhcCcchhhhhhc
Confidence            457999999999999999999999999999997554432       333     556677643  232   334422100


Q ss_pred             CCCCCCCCCCCcCCCCceEEcccCC
Q 045521          148 VFEHEPQVPEELFGLENVVLLPHAA  172 (204)
Q Consensus       148 V~~~EP~~~~~l~~~~nvilTPH~a  172 (204)
                      ....++..+..+|..|--|+-|=-.
T Consensus       307 ~~~a~~v~~~~i~~~~~DI~iPcA~  331 (456)
T 3r3j_A          307 SKTAKYFENQKPWNIPCDIAFPCAT  331 (456)
T ss_dssp             CSSCEEECSCCGGGSCCSEEEECSC
T ss_pred             CCCceEeCCccccccCccEEEeCCC
Confidence            0112223345688888888888543

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=97.29  E-value=0.00016  Score=61.40  Aligned_cols=39  Identities=31%  Similarity=0.395  Sum_probs=35.4

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      ..|.+++|||||+|.||+.+|+.++..|++|++++|+..
T Consensus        12 ~~l~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~   50 (338)
T 1np3_A           12 SIIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGS   50 (338)
T ss_dssp             HHHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTC
T ss_pred             chhcCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChH
Confidence            358899999999999999999999999999999988753

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=97.29  E-value=0.00023  Score=59.67  Aligned_cols=51  Identities=20%  Similarity=0.215  Sum_probs=30.6

Q ss_pred             HHHhcCCCC--CCccccccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCC
Q 045521           65 FVRSEDGEM--GYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRA  115 (204)
Q Consensus        65 ~~~~~~w~~--~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~  115 (204)
                      +.+.+.|.+  .++.......++|||||+|.+|+.+|+.|...|. +|.+|+|+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A            4 HHHHSSGVDLGTENLYFQSNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             ---------------------CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             ccccccccccCcccccccCCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            345666763  3333334456799999999999999999999999 99999996

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=97.26  E-value=0.00033  Score=61.04  Aligned_cols=38  Identities=16%  Similarity=0.313  Sum_probs=35.4

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .+.+.+|+|+|+|.||..++++++++|++|+++|+++.
T Consensus       187 ~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  224 (405)
T 4dio_A          187 TVPAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPA  224 (405)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            57899999999999999999999999999999998764

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=97.24  E-value=0.00033  Score=58.54  Aligned_cols=40  Identities=23%  Similarity=0.272  Sum_probs=34.4

Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .....-++|||||+|.+|+.+|+.|...|.+|.+|+|++.
T Consensus        16 ~~~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   55 (310)
T 3doj_A           16 PRGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS   55 (310)
T ss_dssp             --CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             cccccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            3445668999999999999999999999999999999764

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=97.23  E-value=0.00033  Score=61.97  Aligned_cols=85  Identities=12%  Similarity=0.176  Sum_probs=54.5

Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcce-----eCHHHHHHHH---Hc--CCceEEEee
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGAL-----VDESELVSAL---LE--DRLAAAVLD  147 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~l-----vd~~aL~~aL---~~--g~i~ga~lD  147 (204)
                      +.+|.|+||.|.|+|++|+.+|++|..+|++|+.++.+.       |.+     +|.++|.+.+   ++  |.+.++. +
T Consensus       247 G~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~-------G~i~dp~Gid~edl~~l~~~k~~~~g~v~~~~-~  318 (470)
T 2bma_A          247 NIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSN-------GYVYEPNGFTHENLEFLIDLKEEKKGRIKEYL-N  318 (470)
T ss_dssp             TCCGGGCEEEEECSSHHHHHHHHHHHHTTCEECEEEETT-------EEEECSSCCCHHHHHHHHHHHTTTTCCGGGGG-G
T ss_pred             cCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEEeCC-------ceEECCCCCCHHHHHHHHHHHHhcCCcHHHHH-h
Confidence            457899999999999999999999999999998665433       333     4444443332   22  4565431 1


Q ss_pred             CC-CCCCCCCCCcCCCCceEEccc
Q 045521          148 VF-EHEPQVPEELFGLENVVLLPH  170 (204)
Q Consensus       148 V~-~~EP~~~~~l~~~~nvilTPH  170 (204)
                      -+ ..+..++..+|..|--|+-|=
T Consensus       319 ~~~~a~~v~~~~~~~~~~DI~iPc  342 (470)
T 2bma_A          319 HSSTAKYFPNEKPWGVPCTLAFPC  342 (470)
T ss_dssp             TCSSCEECSSCCTTSSCCSEEEEC
T ss_pred             hcCCcEEecCcCeeecCccEEEec
Confidence            01 112222245677777777774

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=97.22  E-value=0.00087  Score=58.95  Aligned_cols=54  Identities=24%  Similarity=0.423  Sum_probs=42.1

Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcce-----eCHHHHHHHHHc
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGAL-----VDESELVSALLE  138 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~l-----vd~~aL~~aL~~  138 (204)
                      +.++.|+||.|.|+|++|+.+|++|...|++|+.++.+.       |.+     +|.++|.+..++
T Consensus       230 g~~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~-------G~i~dp~Gld~~~l~~~~~~  288 (440)
T 3aog_A          230 GLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHT-------GTVYNEAGIDPYDLLRHVQE  288 (440)
T ss_dssp             TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSS-------CEEECTTCCCHHHHHHHHHH
T ss_pred             CCCccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCC-------cEEECCCCCCHHHHHHHHHh
Confidence            457899999999999999999999999999998665443       333     356666665543

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.21  E-value=0.00049  Score=52.64  Aligned_cols=38  Identities=26%  Similarity=0.227  Sum_probs=34.5

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhc-CCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAF-GCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~f-g~~V~~~~r~~  116 (204)
                      .++.+++|+|+|+|.+|+.+|+.|+.. |.+|.++++++
T Consensus        35 ~~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           35 INPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             BCCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            457789999999999999999999998 99999998864

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=97.18  E-value=0.0017  Score=56.66  Aligned_cols=58  Identities=21%  Similarity=0.287  Sum_probs=44.7

Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHHhh-cCCEEEEEcCCCCCCCCCCcce-----eCHHHHHHHHHc-CCce
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRAEA-FGCFISYRSRAEKPNTKYKGAL-----VDESELVSALLE-DRLA  142 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~~~-fg~~V~~~~r~~~~~~~~~G~l-----vd~~aL~~aL~~-g~i~  142 (204)
                      +.++.|++|.|.|+|++|+.++++|.. .|++|+.++.+.       |.+     +|.++|.+..++ |++.
T Consensus       204 g~~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~-------G~i~dp~Gld~~~l~~~~~~~g~l~  268 (415)
T 2tmg_A          204 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSR-------GGIYNPEGFDVEELIRYKKEHGTVV  268 (415)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSS-------CEEECTTCCCHHHHHHHHHHSSCST
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCC-------CeEECCCCCCHHHHHHHHHhhCCcc
Confidence            457999999999999999999999999 999998665443       223     466777776654 4443

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.16  E-value=0.0004  Score=51.07  Aligned_cols=34  Identities=15%  Similarity=0.213  Sum_probs=31.1

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..++.|+|+|.+|+.+|+.|+..|.+|+++++.+
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~   40 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR   40 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            4579999999999999999999999999999864

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=97.14  E-value=0.0031  Score=53.85  Aligned_cols=102  Identities=11%  Similarity=-0.039  Sum_probs=64.2

Q ss_pred             CCceEEEECCCCCCCCChhhHhhCCcEEEeC---CCCC-----chhHHHHHH--HHHHHHHhh-HHHhcC--CCCCCccc
Q 045521           12 PKLEIVATCSAGLDKIDLVKCKEKGIQVTNT---PDVL-----TDDVADAAI--GLTLAVLRR-FVRSED--GEMGYKLT   78 (204)
Q Consensus        12 ~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~---~~~~-----~~~vAE~~l--~~~L~~~R~-~~~~~~--w~~~~~~~   78 (204)
                      +++.++......++.-.++.+.++|+...|.   |.-.     -.+++|.+-  +.++....- ....|.  +-.  .. 
T Consensus        86 ~g~~~~~y~~~~~~~~l~~~l~~~gi~~~~~etvp~k~~~~~~l~~~s~~Ag~~a~~~gA~nt~~~~~g~G~~l~--~l-  162 (361)
T 1pjc_A           86 KDQLLFTYLHLAAARELTEQLMRVGLTAIAYETVELPNRSLPLLTPMSIIAGRLSVQFGARFLERQQGGRGVLLG--GV-  162 (361)
T ss_dssp             TTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHHHHHHHHHHHHHHHHHTSGGGTSCCCCTT--CB-
T ss_pred             CCCEEEEEeccccCHHHHHHHHHcCCeEEEEeeeEcccCCccccCcchHHHHHHHHHHHHHHHhhccCCCceecc--CC-
Confidence            4555555555555544466777889888763   4211     244555444  444433221 112221  101  11 


Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..+.+++|.|+|.|.+|+.+++.++.+|++|+.++|+.
T Consensus       163 ~~l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          163 PGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             TTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            24788999999999999999999999999999998864

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=97.13  E-value=0.00094  Score=57.24  Aligned_cols=59  Identities=24%  Similarity=0.276  Sum_probs=47.6

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCC-C-----CCcceeCHHHHHHHHHc
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNT-K-----YKGALVDESELVSALLE  138 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~-~-----~~G~lvd~~aL~~aL~~  138 (204)
                      .+.++||||+|.|.+|+++++.++.+|++|+++++.+.... .     +.+..-|.++|.+..+.
T Consensus         9 ~~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~   73 (377)
T 3orq_A            9 LKFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQK   73 (377)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHh
Confidence            46899999999999999999999999999999987654221 1     11666788999888875

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=97.13  E-value=0.00059  Score=57.34  Aligned_cols=37  Identities=27%  Similarity=0.236  Sum_probs=33.1

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCC--EEEEEcCCC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGC--FISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~--~V~~~~r~~  116 (204)
                      ++.-++|||||+|.||+.+|+.++..|.  +|++++|+.
T Consensus        30 ~~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           30 SLSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             CCSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            4556899999999999999999999999  999999864

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.11  E-value=0.00022  Score=52.66  Aligned_cols=35  Identities=14%  Similarity=0.171  Sum_probs=32.5

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      +++|+|+|.|.+|+.+++.++.+|++|..++|+..
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~   55 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNID   55 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence            99999999999999999999999999989998753

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=97.06  E-value=0.00057  Score=56.99  Aligned_cols=39  Identities=23%  Similarity=0.279  Sum_probs=35.0

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .++..++|||||+|.+|+.+|+.|...|.+|.+|+|++.
T Consensus         5 ~~~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   43 (306)
T 3l6d_A            5 DESFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPG   43 (306)
T ss_dssp             CCCCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             cccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            356778999999999999999999999999999998753

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=96.11  E-value=9.1e-05  Score=58.39  Aligned_cols=37  Identities=22%  Similarity=0.319  Sum_probs=34.0

Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      +.+++|||||+|+||+.+|+.+...|++|.+++|+..
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~   53 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ   53 (201)
Confidence            6788999999999999999999999999999988754

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=97.04  E-value=0.0004  Score=61.91  Aligned_cols=45  Identities=22%  Similarity=0.356  Sum_probs=35.4

Q ss_pred             hcCCCCCCcc-ccccCC-CEEEEEeCChHHHHHHHHHhhc------CCEEEEEcC
Q 045521           68 SEDGEMGYKL-TTKISG-RSVGIIGLGRIGMAVAKRAEAF------GCFISYRSR  114 (204)
Q Consensus        68 ~~~w~~~~~~-~~~l~g-~tvGIvG~G~IG~~va~~~~~f------g~~V~~~~r  114 (204)
                      .++|..  +. ...|+| |||||||+|++|..+|+.|+..      |++|++..+
T Consensus        39 ~~~w~~--~~~~~~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r   91 (525)
T 3fr7_A           39 GGRNLF--PLLPEAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLR   91 (525)
T ss_dssp             CCGGGG--GGHHHHTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred             cccccc--ccChHHhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeC
Confidence            345652  22 457999 9999999999999999999987      999875443

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*

Probab=97.04  E-value=0.00065  Score=60.44  Aligned_cols=56  Identities=18%  Similarity=0.369  Sum_probs=43.4

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcce-----eCHHHHHHHHH-cCCce
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGAL-----VDESELVSALL-EDRLA  142 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~l-----vd~~aL~~aL~-~g~i~  142 (204)
                      +|.|+||.|.|+|++|+.+|++|..+|++|+.++.+.       |.+     +|.++|.+..+ .|.+.
T Consensus       241 ~l~g~tVaVQG~GNVG~~aa~~L~e~GakVVavsDs~-------G~iyd~~Gid~~~l~~~k~~~g~i~  302 (501)
T 3mw9_A          241 GFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESD-------GSIWNPDGIDPKELEDFKLQHGTIL  302 (501)
T ss_dssp             SSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSS-------CEEECTTCCCHHHHHHHHHHHSSST
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCC-------ceEECCCCCCHHHHHHHHHhcCCee
Confidence            5899999999999999999999999999998876543       333     56666766443 35554

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.03  E-value=0.00046  Score=49.98  Aligned_cols=37  Identities=27%  Similarity=0.465  Sum_probs=31.4

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+.++++.|+|+|.+|+.+++.|...|.+|..+++..
T Consensus         3 ~~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            3 RIKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             ---CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CCcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3567899999999999999999999999999888754

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=96.99  E-value=0.00075  Score=55.50  Aligned_cols=34  Identities=35%  Similarity=0.637  Sum_probs=31.9

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      ++|||||+|.+|+.+|+.+...|.+|.+|+|++.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE   35 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            6899999999999999999999999999999764

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.91  E-value=0.0012  Score=47.58  Aligned_cols=34  Identities=29%  Similarity=0.383  Sum_probs=30.6

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +++|+|+|+|.+|+.+++.|...|.+|..+++++
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            5789999999999999999999999999998853

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=96.90  E-value=0.00077  Score=57.41  Aligned_cols=34  Identities=29%  Similarity=0.365  Sum_probs=31.6

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      -++|||||+|.||..+|+.++..|.+|++|+|++
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   41 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSR   41 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999999999999999875

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=96.85  E-value=0.0013  Score=54.52  Aligned_cols=47  Identities=21%  Similarity=0.150  Sum_probs=35.3

Q ss_pred             HHhcCCCCCCccccccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           66 VRSEDGEMGYKLTTKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        66 ~~~~~w~~~~~~~~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .++..|.+..+     ..++||||| +|.||+.+|+.++..|.+|.+++|+..
T Consensus         9 ~~~~~~~~~~~-----~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~   56 (298)
T 2pv7_A            9 ENQFGFKTINS-----DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   56 (298)
T ss_dssp             ----CCCCSCT-----TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             hhccCccccCC-----CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc
Confidence            34556764111     356899999 999999999999999999999998753

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=96.85  E-value=0.0012  Score=55.27  Aligned_cols=38  Identities=21%  Similarity=0.399  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      ....++|||||+|.+|+.+|+.+...|.+|.+|+|++.
T Consensus        28 ~~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   65 (320)
T 4dll_A           28 DPYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPA   65 (320)
T ss_dssp             -CCCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             ccCCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHH
Confidence            34667999999999999999999999999999998753

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=96.83  E-value=0.0013  Score=56.31  Aligned_cols=36  Identities=25%  Similarity=0.385  Sum_probs=32.4

Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++.++|||||+|.+|+.+|+.|...|.+|.+|+|++
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~   55 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV   55 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            567899999999999999999999999999999875

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=96.82  E-value=0.0014  Score=53.60  Aligned_cols=33  Identities=27%  Similarity=0.248  Sum_probs=29.9

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCC--EEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGC--FISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~--~V~~~~r~~  116 (204)
                      ++|||||+|.||+.+|+.++..|.  +|++++|+.
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            589999999999999999999888  999998753

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.80  E-value=0.0015  Score=45.59  Aligned_cols=35  Identities=14%  Similarity=0.254  Sum_probs=31.8

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcC-CEEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFG-CFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg-~~V~~~~r~~  116 (204)
                      .+++|+|+|.|.||+.+++.|...| .+|..++|++
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            4689999999999999999999999 8899998864

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=96.78  E-value=0.0016  Score=54.04  Aligned_cols=35  Identities=29%  Similarity=0.356  Sum_probs=31.7

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..++|||||+|.+|+.+|+.|...|.+|.+|+|++
T Consensus         6 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A            6 TDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            34789999999999999999999999999999864

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=96.77  E-value=0.00093  Score=54.16  Aligned_cols=38  Identities=26%  Similarity=0.342  Sum_probs=32.8

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcCCC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r~~  116 (204)
                      .++.+++|||||+|.+|+.+++.+...|.+ |.+++|+.
T Consensus         6 ~~~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~   44 (266)
T 3d1l_A            6 RSIEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE   44 (266)
T ss_dssp             -CGGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH
T ss_pred             cCCCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence            456678999999999999999999988998 88888864

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=96.75  E-value=0.00082  Score=55.27  Aligned_cols=34  Identities=24%  Similarity=0.362  Sum_probs=31.5

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      ++|||||+|.+|+.+|+.+...|.+|.+|+|++.
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA   35 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            4799999999999999999999999999999764

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=96.73  E-value=0.0013  Score=54.72  Aligned_cols=35  Identities=20%  Similarity=0.377  Sum_probs=27.9

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKP  118 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~  118 (204)
                      ++||+||+|..|+.+|+.|..-|.+|++|||++..
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~   40 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASK   40 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC------
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence            57999999999999999999999999999987654

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=96.73  E-value=0.0011  Score=54.87  Aligned_cols=36  Identities=22%  Similarity=0.331  Sum_probs=32.7

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKP  118 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~  118 (204)
                      .++|||||+|.+|+.+|+.+...|.+|.+|+|++..
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~   50 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEA   50 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence            468999999999999999999999999999987653

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.69  E-value=0.0019  Score=53.12  Aligned_cols=33  Identities=18%  Similarity=0.308  Sum_probs=31.1

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|+|||.|.+|+.+|..+...|++|+.++++.
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT   37 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            699999999999999999999999999999864

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=96.65  E-value=0.0015  Score=51.56  Aligned_cols=35  Identities=29%  Similarity=0.388  Sum_probs=30.8

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..++|+|||+|.+|+.+++.+...|.+|.+++|+.
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~   61 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNP   61 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            45789999999999999999999999999998864

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.62  E-value=0.0063  Score=48.74  Aligned_cols=42  Identities=26%  Similarity=0.304  Sum_probs=37.9

Q ss_pred             CccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           75 YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        75 ~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +|...+|+|++|.|||.|.+|.+.++.|...|++|+.+++..
T Consensus        23 ~Pifl~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~   64 (223)
T 3dfz_A           23 YTVMLDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTV   64 (223)
T ss_dssp             CEEEECCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSC
T ss_pred             cccEEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            455678999999999999999999999999999999998753

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.59  E-value=0.0024  Score=47.39  Aligned_cols=35  Identities=9%  Similarity=0.021  Sum_probs=31.7

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..+++.|+|+|.+|+.+++.|...|.+|..+++.+
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            46789999999999999999999999999998863

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=96.58  E-value=0.0017  Score=53.32  Aligned_cols=34  Identities=29%  Similarity=0.386  Sum_probs=30.9

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      ++|||||+|.+|+.+++.+...|.+|.+++|++.
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~   34 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPD   34 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            3799999999999999999999999999998753

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=96.56  E-value=0.0027  Score=51.65  Aligned_cols=33  Identities=30%  Similarity=0.529  Sum_probs=30.2

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|+|||+|.+|+.+++.+...|.+|.+++|++
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   33 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            479999999999999999999999999998864

>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A

Probab=96.55  E-value=0.0075  Score=53.13  Aligned_cols=38  Identities=21%  Similarity=0.407  Sum_probs=33.9

Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      +.++.|+||.|.|+|++|+.+|++|...|++|++++.+
T Consensus       225 G~~l~g~~v~VqG~GnVG~~~a~~L~~~GakvVavsD~  262 (449)
T 1bgv_A          225 NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGP  262 (449)
T ss_dssp             TCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEET
T ss_pred             cCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEeC
Confidence            45789999999999999999999999999999875543

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=96.53  E-value=0.0025  Score=51.63  Aligned_cols=38  Identities=24%  Similarity=0.460  Sum_probs=34.0

Q ss_pred             cccCCCEEEEEeCC---hHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGLG---RIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~G---~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+|+||++.|-|.+   .||+++|+.|..-|++|+..+|+.
T Consensus         2 ~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~   42 (256)
T 4fs3_A            2 LNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKE   42 (256)
T ss_dssp             CCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence            36899999999974   699999999999999999988864

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=96.51  E-value=0.002  Score=54.04  Aligned_cols=34  Identities=12%  Similarity=0.119  Sum_probs=31.6

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcC-CEEEEEcCCC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFG-CFISYRSRAE  116 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg-~~V~~~~r~~  116 (204)
                      .++|||||+|.+|+.+|+.|...| .+|.+|+|++
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            378999999999999999999999 9999999875

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=96.50  E-value=0.0038  Score=51.08  Aligned_cols=38  Identities=18%  Similarity=0.251  Sum_probs=35.1

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .++.|+++.|+|.|.+|+.+++.|...|.+|+.++|+.
T Consensus       115 ~~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~  152 (271)
T 1nyt_A          115 FIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV  152 (271)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             cCcCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence            46789999999999999999999999999999999874

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=96.43  E-value=0.0038  Score=51.57  Aligned_cols=64  Identities=16%  Similarity=0.090  Sum_probs=47.8

Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCCCCCCCC--CcceeCHHHHHHHHHcCCc
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAEKPNTKY--KGALVDESELVSALLEDRL  141 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~~~~~~~--~G~lvd~~aL~~aL~~g~i  141 (204)
                      +.++.||++.|+|.|.+|+.++..|...|+ +|..++|+.......  ....+..+++.+++.+-.+
T Consensus       112 ~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDi  178 (277)
T 3don_A          112 YEGIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDI  178 (277)
T ss_dssp             STTGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSE
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCE
Confidence            346889999999999999999999999999 899999986543222  1344556666666654433

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*

Probab=96.42  E-value=0.0029  Score=53.87  Aligned_cols=31  Identities=32%  Similarity=0.439  Sum_probs=27.7

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEE-EcC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISY-RSR  114 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~-~~r  114 (204)
                      .+|||.|||+||+.++|.+..+||+|.+ .|+
T Consensus         8 ~kvgInGFGRIGrlv~R~~~~~~veivainDp   39 (346)
T 3h9e_O            8 LTVGINGFGRIGRLVLRACMEKGVKVVAVNDP   39 (346)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECT
T ss_pred             eEEEEECCChHHHHHHHHHHhCCCEEEEEeCC
Confidence            4899999999999999999999999877 454

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=96.41  E-value=0.0022  Score=52.25  Aligned_cols=32  Identities=25%  Similarity=0.295  Sum_probs=29.5

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|+|||+|.+|+.+++.+.. |.+|.+++|++
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~   33 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTF   33 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TSCEEEECSST
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            479999999999999999998 99999999875

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=96.40  E-value=0.0025  Score=52.96  Aligned_cols=34  Identities=21%  Similarity=0.518  Sum_probs=31.4

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      ++|||||+|.+|+.+|+.+...|.+|.+++|+..
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~   64 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAE   64 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGG
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            6899999999999999999999999999998754

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=96.38  E-value=0.0029  Score=50.93  Aligned_cols=35  Identities=26%  Similarity=0.425  Sum_probs=30.8

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcC----CEEEEEcCCCC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFG----CFISYRSRAEK  117 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg----~~V~~~~r~~~  117 (204)
                      .++|||||+|.+|+.+++.+..-|    .+|..++|+..
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~   42 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKK   42 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCcc
Confidence            468999999999999999998778    68999998764

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=96.35  E-value=0.0049  Score=51.29  Aligned_cols=61  Identities=16%  Similarity=0.139  Sum_probs=45.3

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCCCCCC----CCCc---ceeCHHHHHHHHHcC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAEKPNT----KYKG---ALVDESELVSALLED  139 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~~~~~----~~~G---~lvd~~aL~~aL~~g  139 (204)
                      .++.+++++|+|.|.+|+.++..|...|+ +|..++|+.....    .+..   ..++.+++.+++..-
T Consensus       137 ~~l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~a  205 (297)
T 2egg_A          137 ITLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEY  205 (297)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGC
T ss_pred             CCCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccC
Confidence            46789999999999999999999999998 8999999753211    0111   456666666665543

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=96.35  E-value=0.0037  Score=51.34  Aligned_cols=33  Identities=27%  Similarity=0.328  Sum_probs=30.7

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|||||+|.+|+.+++.+...|.+|.+++|++
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   37 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME   37 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            689999999999999999999999999999864

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=96.33  E-value=0.0037  Score=52.11  Aligned_cols=34  Identities=21%  Similarity=0.427  Sum_probs=31.6

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      |+||+||+|..|+.+|+.|..-|.+|.+|+|++.
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~   37 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQS   37 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHH
Confidence            5899999999999999999999999999999864

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.31  E-value=0.011  Score=44.97  Aligned_cols=57  Identities=14%  Similarity=0.263  Sum_probs=45.4

Q ss_pred             CCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCCC--------CCcceeCHHHHHHHHHc
Q 045521           82 SGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNTK--------YKGALVDESELVSALLE  138 (204)
Q Consensus        82 ~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~~--------~~G~lvd~~aL~~aL~~  138 (204)
                      .+++|.|.|. |.||+.+++.|..-|.+|+..+|+......        +.+.+-|.+++.++++.
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   67 (206)
T 1hdo_A            2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAG   67 (206)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTT
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcC
Confidence            3589999997 999999999999999999999887543211        11777888898888874

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=96.31  E-value=0.0043  Score=50.83  Aligned_cols=33  Identities=18%  Similarity=0.416  Sum_probs=30.8

Q ss_pred             CEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|+|||+ |.+|+.+|+.+...|.+|.+++|+.
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~   45 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP   45 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            58999999 9999999999999999999999864

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=96.28  E-value=0.0024  Score=50.50  Aligned_cols=35  Identities=34%  Similarity=0.321  Sum_probs=31.4

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCCEEEE-EcCCCC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGCFISY-RSRAEK  117 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~-~~r~~~  117 (204)
                      -++|+|||+|++|+.+|+.+...|.+|.+ ++|+..
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~   58 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPA   58 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHH
Confidence            36899999999999999999989999988 888754

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=96.27  E-value=0.0042  Score=50.08  Aligned_cols=31  Identities=26%  Similarity=0.415  Sum_probs=28.7

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSR  114 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r  114 (204)
                      ++|||||+|.+|+.+|+.|...|.+|.+++|
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~   31 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLE   31 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCT
T ss_pred             CeEEEEechHHHHHHHHHHHHCCCeEEEeCC
Confidence            3799999999999999999999999998877

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=96.25  E-value=0.0061  Score=49.47  Aligned_cols=34  Identities=15%  Similarity=0.158  Sum_probs=30.8

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      ++|+|||+|.+|+.+|..|..-|.+|..++|+..
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   34 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence            3799999999999999999989999999988754

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=96.22  E-value=0.0049  Score=49.62  Aligned_cols=33  Identities=27%  Similarity=0.240  Sum_probs=29.9

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcC-CEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFG-CFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg-~~V~~~~r~~  116 (204)
                      ++|+|||+|.+|+.+++.+...| .+|.+++|++
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~   34 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCH
Confidence            47999999999999999998889 8999999864

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=96.20  E-value=0.0051  Score=49.48  Aligned_cols=33  Identities=21%  Similarity=0.322  Sum_probs=30.3

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|||||+|.+|+.+++.+...|.+|.+++|++
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~   36 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSL   36 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCH
Confidence            589999999999999999999999999999864

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=96.18  E-value=0.0051  Score=50.44  Aligned_cols=33  Identities=30%  Similarity=0.444  Sum_probs=30.6

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|+|||+|.+|+.+++.+...|.+|.+++|++
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   38 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   38 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            489999999999999999999999999999864

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=96.18  E-value=0.0051  Score=50.38  Aligned_cols=34  Identities=26%  Similarity=0.291  Sum_probs=29.6

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhc--CCEEEEEcCCC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAF--GCFISYRSRAE  116 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~f--g~~V~~~~r~~  116 (204)
                      -++|||||+|.+|+.+|+.+...  |.+|.+++++.
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   41 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSD   41 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSH
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCH
Confidence            46899999999999999999765  78999998753

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=96.15  E-value=0.005  Score=50.65  Aligned_cols=36  Identities=19%  Similarity=0.220  Sum_probs=31.8

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCC---EEEEEcCCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGC---FISYRSRAEK  117 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~---~V~~~~r~~~  117 (204)
                      ..++|||||+|++|+.+++.+..-|.   +|..++|+..
T Consensus         2 ~~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~   40 (280)
T 3tri_A            2 NTSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLD   40 (280)
T ss_dssp             CCSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSH
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHH
Confidence            35789999999999999999998888   8999998753

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=96.12  E-value=0.0047  Score=49.56  Aligned_cols=34  Identities=24%  Similarity=0.323  Sum_probs=31.0

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCC----EEEEEcCCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGC----FISYRSRAEK  117 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~----~V~~~~r~~~  117 (204)
                      ++|||||+|++|+.+++.+...|.    +|..++|++.
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~   40 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTA   40 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHH
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHH
Confidence            689999999999999999999998    9999998753

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=96.09  E-value=0.0065  Score=50.58  Aligned_cols=35  Identities=20%  Similarity=0.167  Sum_probs=31.2

Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      -.-|+|||||+|.+|..+|..+. -|.+|+.||+++
T Consensus        10 ~~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~   44 (293)
T 1zej_A           10 HHHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE   44 (293)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             cCCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence            36799999999999999999999 999999999864

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=96.08  E-value=0.0047  Score=50.50  Aligned_cols=33  Identities=24%  Similarity=0.365  Sum_probs=29.8

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      ++|||||+|.+|+.+|+.+...|.+|.+++ ++.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~   36 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGP   36 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHH
Confidence            589999999999999999999999999888 543

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=96.06  E-value=0.0079  Score=50.74  Aligned_cols=39  Identities=15%  Similarity=0.142  Sum_probs=35.4

Q ss_pred             cccccCCCEEEEEeCChH-HHHHHHHHhhcCCEEEEEcCC
Q 045521           77 LTTKISGRSVGIIGLGRI-GMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        77 ~~~~l~g~tvGIvG~G~I-G~~va~~~~~fg~~V~~~~r~  115 (204)
                      .+.++.|+++.|||.|.| |+.+|++|...|++|+.++|+
T Consensus       171 ~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~  210 (320)
T 1edz_A          171 EGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN  210 (320)
T ss_dssp             TTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             cCCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCc
Confidence            455899999999999986 999999999999999988876

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=96.03  E-value=0.0051  Score=54.76  Aligned_cols=35  Identities=17%  Similarity=0.319  Sum_probs=32.2

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .++|||||+|.+|+.+|+.+...|.+|.+|+|++.
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~   38 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   38 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46899999999999999999999999999999763

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=96.02  E-value=0.0068  Score=52.76  Aligned_cols=58  Identities=19%  Similarity=0.291  Sum_probs=46.7

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC------CCCCcceeCHHHHHHHHH
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN------TKYKGALVDESELVSALL  137 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~------~~~~G~lvd~~aL~~aL~  137 (204)
                      -+.|++|+|+|-|.+|+.+++.++.+|.+|+.+++.+...      ..+.+..-|.++|.+..+
T Consensus        32 ~~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~   95 (419)
T 4e4t_A           32 ILPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAG   95 (419)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHh
Confidence            4689999999999999999999999999999988754321      012266678899988884

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=96.01  E-value=0.005  Score=54.69  Aligned_cols=38  Identities=24%  Similarity=0.457  Sum_probs=32.2

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..++.++|||||+|.+|+.+|+.+...|.+|.+|+|++
T Consensus        11 ~~~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~   48 (480)
T 2zyd_A           11 HHMSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSR   48 (480)
T ss_dssp             ----CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             cccCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            35778899999999999999999999999999999875

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=95.94  E-value=0.01  Score=49.90  Aligned_cols=39  Identities=28%  Similarity=0.336  Sum_probs=35.7

Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~  116 (204)
                      +.+++||++.|+|.|.+|++++..|...|+ +|..++|+.
T Consensus       149 ~~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~  188 (315)
T 3tnl_A          149 GHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKD  188 (315)
T ss_dssp             TCCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CCCccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCC
Confidence            456899999999999999999999999999 899999983

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=95.94  E-value=0.0098  Score=49.17  Aligned_cols=39  Identities=21%  Similarity=0.177  Sum_probs=35.4

Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~  116 (204)
                      +.++.||++.|+|.|.+|+.++..|...|+ +|..++|+.
T Consensus       121 ~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  160 (281)
T 3o8q_A          121 QVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTF  160 (281)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSH
T ss_pred             CCCccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCH
Confidence            456899999999999999999999999997 899999875

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=95.91  E-value=0.0094  Score=49.24  Aligned_cols=33  Identities=30%  Similarity=0.450  Sum_probs=30.6

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|+|||.|.+|..+|..+..-|.+|+.++++.
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   48 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   48 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            689999999999999999988899999999864

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=95.91  E-value=0.0073  Score=49.44  Aligned_cols=39  Identities=18%  Similarity=-0.002  Sum_probs=35.4

Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +.++.+++++|+|.|.+|+.++..|...|.+|..++|+.
T Consensus       114 ~~~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A          114 NWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             TCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            346789999999999999999999999999999999874

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=95.90  E-value=0.0061  Score=50.31  Aligned_cols=41  Identities=20%  Similarity=0.393  Sum_probs=36.5

Q ss_pred             ccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           76 KLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        76 ~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +...+|+|++|.|||.|.+|.+.++.|...|++|+.+++..
T Consensus         6 pl~~~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A            6 QLAHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             EEEECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             eEEEEcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            44567999999999999999999999999999999887643

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=95.87  E-value=0.013  Score=48.17  Aligned_cols=39  Identities=15%  Similarity=0.068  Sum_probs=35.3

Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~  116 (204)
                      +.++.||++.|+|.|.+|+.++..|...|+ +|..++|+.
T Consensus       115 ~~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~  154 (272)
T 3pwz_A          115 GEPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDM  154 (272)
T ss_dssp             CCCCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCCccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            446889999999999999999999999996 899999975

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=95.84  E-value=0.0035  Score=50.53  Aligned_cols=34  Identities=18%  Similarity=0.342  Sum_probs=30.9

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      ..++|||||+|.||..+|+.|+.-|.+|.++++.
T Consensus         5 ~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~   38 (232)
T 3dfu_A            5 PRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP   38 (232)
T ss_dssp             CCCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH
Confidence            3468999999999999999999999999999874

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=95.80  E-value=0.011  Score=48.39  Aligned_cols=33  Identities=15%  Similarity=0.168  Sum_probs=30.1

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|+|||.|.+|+.+|..|..-|.+|..++|++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            589999999999999999998899999998853

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=95.77  E-value=0.017  Score=44.95  Aligned_cols=55  Identities=18%  Similarity=0.168  Sum_probs=45.6

Q ss_pred             CEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCCCC-------CcceeCHHHHHHHHHc
Q 045521           84 RSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNTKY-------KGALVDESELVSALLE  138 (204)
Q Consensus        84 ~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~-------~G~lvd~~aL~~aL~~  138 (204)
                      ++|.|.| .|.||+.+++.|..-|.+|+..+|+.......       .+.+-|.+++.++++.
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~   67 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCKG   67 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHTT
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHhcC
Confidence            6899999 69999999999999999999999876543221       2888899999988874

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=95.76  E-value=0.011  Score=49.45  Aligned_cols=33  Identities=21%  Similarity=0.216  Sum_probs=30.6

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|+|||+|.+|+.+|..|...|.+|..++|++
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~   37 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   37 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            689999999999999999999999999998864

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=95.76  E-value=0.01  Score=46.07  Aligned_cols=33  Identities=33%  Similarity=0.493  Sum_probs=30.0

Q ss_pred             CEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|+|+| .|.+|+.+++.+...|.+|..++|+.
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~   34 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3799999 99999999999999999999998864

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=95.75  E-value=0.015  Score=47.85  Aligned_cols=105  Identities=12%  Similarity=0.088  Sum_probs=66.0

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCC----------------CCC--------c----ceeCHHHHHH
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNT----------------KYK--------G----ALVDESELVS  134 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~----------------~~~--------G----~lvd~~aL~~  134 (204)
                      ++++.|+|.|.+|+.++..|...|.+|..++|+.....                .++        |    ..++.+-|.+
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~~~~~~~~~l~~~DiVInaTp~Gm~~~~~l~~~~l~~  197 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCFMEPPKSAFDLIINATSASLHNELPLNKEVLKG  197 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTCEEESSCCSSCCSEEEECCTTCCCCSCSSCHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEecHHHhccCCEEEEcccCCCCCCCCCChHHHHh
Confidence            89999999999999999999999999999999864310                111        2    2466665555


Q ss_pred             HHHcCCceEEEeeCCCCCCCCCCCcCCCCceEEcccCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 045521          135 ALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATADIVIENLEACFLNKP  198 (204)
Q Consensus       135 aL~~g~i~ga~lDV~~~EP~~~~~l~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~  198 (204)
                      .+..+.   ..+|+.+. |  ..+|...-.     -.+..+.....-+..+++++.+-|..-++
T Consensus       198 ~l~~~~---~v~D~vY~-P--~T~ll~~A~-----~~G~~~~~Gl~MLv~Qa~~~f~lw~g~~~  250 (269)
T 3phh_A          198 YFKEGK---LAYDLAYG-F--LTPFLSLAK-----ELKTPFQDGKDMLIYQAALSFEKFSASQI  250 (269)
T ss_dssp             HHHHCS---EEEESCCS-S--CCHHHHHHH-----HTTCCEECSHHHHHHHHHHHHHHHTTTSS
T ss_pred             hCCCCC---EEEEeCCC-C--chHHHHHHH-----HCcCEEECCHHHHHHHHHHHHHHHhCCCC
Confidence            677664   45787764 4  223321100     00222333345566777777777764443

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=95.73  E-value=0.013  Score=51.77  Aligned_cols=72  Identities=17%  Similarity=0.027  Sum_probs=48.0

Q ss_pred             CCCCchhHHHHHHHHHHHHHhhHHHhcCCCC--C---CccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           43 PDVLTDDVADAAIGLTLAVLRRFVRSEDGEM--G---YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        43 ~~~~~~~vAE~~l~~~L~~~R~~~~~~~w~~--~---~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .|.|-..|.|.+...+|...|.   .+.|.-  .   +.......=++|+|||.|.+|..+|..+..-|.+|+.+|++..
T Consensus        12 ~~~~~~~~~~~~~~~~~~a~~~---~~~w~~p~~~~~~~~~~~~~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           12 TGENLYFQGSEVRSYLMEAHSL---AGQWSLPNDRGDHTNSEAYDVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             TSGGGGGCBCHHHHHHHHTTCC---TTSCBCSTTSCBTTSCCCCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             cccchhhhhHHHHHHHHhHHHh---hccccCCCCccccccCCcccCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            4555556666666666663332   345652  0   1011112237999999999999999999999999999998653

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=95.70  E-value=0.016  Score=47.85  Aligned_cols=39  Identities=23%  Similarity=0.198  Sum_probs=35.4

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCCC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAEK  117 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~~  117 (204)
                      .++.||++.|+|.|.+|+.++..|...|+ +|..++|+..
T Consensus       123 ~~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~  162 (283)
T 3jyo_A          123 PNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTS  162 (283)
T ss_dssp             TTCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHH
T ss_pred             cCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHH
Confidence            46899999999999999999999999999 6999999753

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=95.67  E-value=0.012  Score=48.52  Aligned_cols=37  Identities=22%  Similarity=0.203  Sum_probs=33.9

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .++.||++.|+|.|.||+++|+.|...| +|+.++|+.
T Consensus       124 ~~l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~  160 (287)
T 1nvt_A          124 GRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV  160 (287)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             CCcCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCH
Confidence            4578999999999999999999999999 999998864

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=95.62  E-value=0.0093  Score=47.95  Aligned_cols=38  Identities=26%  Similarity=0.298  Sum_probs=34.2

Q ss_pred             cccCCCEEEEEeC-C-hHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-G-RIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G-~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..+.||++.|.|. | .||+++|+.|..-|++|+..+|+.
T Consensus        18 ~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~   57 (266)
T 3o38_A           18 GLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHE   57 (266)
T ss_dssp             STTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCH
Confidence            4689999999998 8 599999999999999999988864

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=95.60  E-value=0.015  Score=48.09  Aligned_cols=39  Identities=18%  Similarity=0.095  Sum_probs=35.5

Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~  116 (204)
                      +.++.|+++.|+|.|.+|+.++..|...|+ +|..++|+.
T Consensus       117 ~~~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~  156 (282)
T 3fbt_A          117 RVEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNP  156 (282)
T ss_dssp             TCCCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            446889999999999999999999999999 899999875

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=95.52  E-value=0.011  Score=52.46  Aligned_cols=33  Identities=18%  Similarity=0.347  Sum_probs=30.7

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|||||+|.+|+.+|..+...|.+|.+++|+.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~   35 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            579999999999999999999999999999875

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=95.52  E-value=0.019  Score=48.22  Aligned_cols=39  Identities=21%  Similarity=0.339  Sum_probs=35.5

Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~  116 (204)
                      +.+++||++.|+|.|.+|++++..|...|+ +|..++|+.
T Consensus       143 ~~~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~  182 (312)
T 3t4e_A          143 GFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKD  182 (312)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CCCcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCC
Confidence            456899999999999999999999999999 799999983

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=95.51  E-value=0.014  Score=45.83  Aligned_cols=39  Identities=18%  Similarity=0.181  Sum_probs=32.1

Q ss_pred             ccccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           78 TTKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ...+.||+|.|.|. |.||+++++.|..-|.+|+..+|+.
T Consensus        16 ~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   55 (236)
T 3e8x_A           16 NLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE   55 (236)
T ss_dssp             -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             ccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence            35789999999997 9999999999999999999999875

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=95.47  E-value=0.022  Score=44.87  Aligned_cols=57  Identities=19%  Similarity=0.156  Sum_probs=44.2

Q ss_pred             cCCCEEEEEe-CChHHHHHHHHHhhcC-CEEEEEcCCCCCCCC--------CCcceeCHHHHHHHHH
Q 045521           81 ISGRSVGIIG-LGRIGMAVAKRAEAFG-CFISYRSRAEKPNTK--------YKGALVDESELVSALL  137 (204)
Q Consensus        81 l~g~tvGIvG-~G~IG~~va~~~~~fg-~~V~~~~r~~~~~~~--------~~G~lvd~~aL~~aL~  137 (204)
                      ...|+|.|.| .|.||+++++.|..-| .+|..++|+......        +.+.+-|.+++.++++
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~   87 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQ   87 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHT
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhc
Confidence            4568999999 7999999999999999 899998887543221        1167778888877776

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.45  E-value=0.016  Score=50.81  Aligned_cols=81  Identities=21%  Similarity=0.268  Sum_probs=54.7

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCc
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEEL  159 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l  159 (204)
                      ++.||+|.|||+|.+|..+|+.|+..|.+|.++|.....          +....+.|++--+.     ++....  +..+
T Consensus         6 ~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~----------~~~~~~~L~~~gi~-----~~~g~~--~~~~   68 (451)
T 3lk7_A            6 TFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFD----------ENPTAQSLLEEGIK-----VVCGSH--PLEL   68 (451)
T ss_dssp             TTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGG----------GCHHHHHHHHTTCE-----EEESCC--CGGG
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCccc----------CChHHHHHHhCCCE-----EEECCC--hHHh
Confidence            578999999999999999999999999999999885421          12334556543232     221110  1122


Q ss_pred             -CC-CCceEEcccCCCCcHH
Q 045521          160 -FG-LENVVLLPHAASGTEE  177 (204)
Q Consensus       160 -~~-~~nvilTPH~a~~t~~  177 (204)
                       -. .+-|+++|.+.-...+
T Consensus        69 ~~~~~d~vv~spgi~~~~p~   88 (451)
T 3lk7_A           69 LDEDFCYMIKNPGIPYNNPM   88 (451)
T ss_dssp             GGSCEEEEEECTTSCTTSHH
T ss_pred             hcCCCCEEEECCcCCCCChh
Confidence             22 5678999998876665

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=95.43  E-value=0.0094  Score=48.23  Aligned_cols=38  Identities=21%  Similarity=0.320  Sum_probs=33.8

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~  116 (204)
                      ..|++++|.|+|.|.+|..+++.|...|. +|..+|+..
T Consensus        27 ~~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           27 EALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             HHHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            46899999999999999999999999998 788888754

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=95.42  E-value=0.013  Score=51.07  Aligned_cols=34  Identities=24%  Similarity=0.292  Sum_probs=31.0

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +.+|.|+|+|++|+.+++.|+..|.+|+++++.+
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~   37 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDP   37 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            4579999999999999999999999999998864

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=95.41  E-value=0.035  Score=45.67  Aligned_cols=58  Identities=21%  Similarity=0.229  Sum_probs=45.2

Q ss_pred             cCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCC-----------C---CCcceeCHHHHHHHHHc
Q 045521           81 ISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNT-----------K---YKGALVDESELVSALLE  138 (204)
Q Consensus        81 l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~-----------~---~~G~lvd~~aL~~aL~~  138 (204)
                      +.+++|.|.|. |.||+.+++.|..-|.+|+..+|+.....           .   +.+.+-|.+++.++++.
T Consensus         1 m~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~   73 (345)
T 2z1m_A            1 MSGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEK   73 (345)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHh
Confidence            46899999996 99999999999999999999988754311           1   12777788888888775

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=95.39  E-value=0.013  Score=52.31  Aligned_cols=35  Identities=23%  Similarity=0.408  Sum_probs=31.9

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      ..+|||||+|.+|+.+|..+..-|.+|.+|+|++.
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~   44 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQS   44 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSH
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46899999999999999999999999999999763

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=95.39  E-value=0.027  Score=46.67  Aligned_cols=40  Identities=18%  Similarity=0.152  Sum_probs=30.5

Q ss_pred             ccccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           78 TTKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        78 ~~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      ...+.+|+|.|.|. |.||+.+++.|..-|.+|++.+|...
T Consensus        14 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~   54 (347)
T 4id9_A           14 LVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPS   54 (347)
T ss_dssp             -------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             ccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            45789999999997 99999999999999999999988754

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=95.38  E-value=0.013  Score=49.02  Aligned_cols=37  Identities=35%  Similarity=0.395  Sum_probs=31.1

Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcC----CEEEEEcCCCC
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFG----CFISYRSRAEK  117 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg----~~V~~~~r~~~  117 (204)
                      +..++|||||+|.+|..+|..|..-|    .+|.+++|+..
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~   60 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMD   60 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTT
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCcc
Confidence            44568999999999999999998888    68999998763

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=95.37  E-value=0.013  Score=51.93  Aligned_cols=34  Identities=21%  Similarity=0.425  Sum_probs=31.1

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .++|||||+|.+|+.+|+.+...|.+|.+++|+.
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~   38 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTT   38 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            3689999999999999999999999999999864

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=95.36  E-value=0.044  Score=45.32  Aligned_cols=60  Identities=18%  Similarity=0.106  Sum_probs=46.1

Q ss_pred             ccccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCC-------C---CCcceeCHHHHHHHHH
Q 045521           78 TTKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNT-------K---YKGALVDESELVSALL  137 (204)
Q Consensus        78 ~~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~-------~---~~G~lvd~~aL~~aL~  137 (204)
                      ...+.+++|.|.|. |.||+.+++.|..-|.+|+..+|......       .   +.+.+-|.+++.++++
T Consensus        15 ~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~   85 (330)
T 2pzm_A           15 VPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFD   85 (330)
T ss_dssp             CSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHH
T ss_pred             cccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHh
Confidence            46789999999996 99999999999999999999888543211       1   1166667777777665

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=95.34  E-value=0.012  Score=46.20  Aligned_cols=33  Identities=15%  Similarity=0.013  Sum_probs=30.2

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|.|+|+|.+|+.+|+.|...|.+|..+++.+
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~   33 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDR   33 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            368999999999999999999999999998765

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=95.32  E-value=0.015  Score=49.28  Aligned_cols=37  Identities=24%  Similarity=0.387  Sum_probs=34.3

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+.|++|.|+|.|.||+.++++++.+|++|+..+++.
T Consensus       178 ~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~  214 (366)
T 2cdc_A          178 TLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRRE  214 (366)
T ss_dssp             SSTTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSC
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            5679999999999999999999999999999988865

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=95.30  E-value=0.014  Score=51.81  Aligned_cols=33  Identities=27%  Similarity=0.430  Sum_probs=30.3

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|||||+|.+|+.+|..+...|.+|.+++|+.
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~   34 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            379999999999999999999999999999864

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=95.27  E-value=0.019  Score=48.71  Aligned_cols=36  Identities=36%  Similarity=0.659  Sum_probs=33.0

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .|++|.|+|.|.||+.++++++.+|++|++.+++..
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~  222 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPS  222 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            689999999999999999999999999998887653

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=95.26  E-value=0.036  Score=47.78  Aligned_cols=61  Identities=15%  Similarity=0.283  Sum_probs=45.4

Q ss_pred             cccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCC-C---CC----CCcceeCHHHHHHHHHc
Q 045521           77 LTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKP-N---TK----YKGALVDESELVSALLE  138 (204)
Q Consensus        77 ~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~-~---~~----~~G~lvd~~aL~~aL~~  138 (204)
                      ++..+.+++|+|+|-|.+|+.+++.++.+|.+|+.++ .... .   ..    ..+..-|.++|.+..+.
T Consensus        18 ~~~mm~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d-~~~~p~~~~ad~~~~~~~~~~d~~~l~~~a~~   86 (403)
T 3k5i_A           18 QGHMWNSRKVGVLGGGQLGRMLVESANRLNIQVNVLD-ADNSPAKQISAHDGHVTGSFKEREAVRQLAKT   86 (403)
T ss_dssp             ---CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE-STTCTTGGGCCSSCCEESCTTCHHHHHHHHTT
T ss_pred             eccCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE-CCCCcHHHhccccceeecCCCCHHHHHHHHHh
Confidence            3455679999999999999999999999999998887 4321 1   11    11666788888887765

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=95.26  E-value=0.028  Score=45.07  Aligned_cols=38  Identities=18%  Similarity=0.442  Sum_probs=33.3

Q ss_pred             cccCCCEEEEEeC-Ch--HHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-GR--IGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~--IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .++.||++.|.|. |.  ||+++|+.|..-|++|+..+|+.
T Consensus         3 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   43 (266)
T 3oig_A            3 FSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGE   43 (266)
T ss_dssp             SCCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCch
Confidence            3689999999997 45  99999999999999999888764

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=95.25  E-value=0.019  Score=47.64  Aligned_cols=31  Identities=23%  Similarity=0.261  Sum_probs=28.9

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSR  114 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r  114 (204)
                      ++|+|||+|.+|+.+|..|..-|.+|..++|
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            3799999999999999999888999999998

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=95.25  E-value=0.021  Score=46.51  Aligned_cols=63  Identities=19%  Similarity=0.220  Sum_probs=46.1

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHc--CCceEEEeeCCCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLE--DRLAAAVLDVFEHE  152 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~--g~i~ga~lDV~~~E  152 (204)
                      +|+||++.|-|- +.||+++|+.|..-|++|+.++|+...          .+.+.+.+++  ++......||.+.|
T Consensus         4 sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~----------~~~~~~~i~~~g~~~~~~~~Dvt~~~   69 (254)
T 4fn4_A            4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDR----------LNQIVQELRGMGKEVLGVKADVSKKK   69 (254)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH----------HHHHHHHHHHTTCCEEEEECCTTSHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHH----------HHHHHHHHHhcCCcEEEEEccCCCHH
Confidence            699999999995 679999999999999999998886421          1233444432  45566667776544

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=95.23  E-value=0.027  Score=47.28  Aligned_cols=36  Identities=36%  Similarity=0.560  Sum_probs=33.0

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .|.+|.|+|.|.||+..+++++.+|++|++.+++..
T Consensus       176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~  211 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEH  211 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSST
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            589999999999999999999999999999887654

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=95.21  E-value=0.046  Score=44.15  Aligned_cols=40  Identities=20%  Similarity=0.320  Sum_probs=35.0

Q ss_pred             ccccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           78 TTKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        78 ~~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      ..++.||++.|.|- |.||+++|+.|..-|++|+..+|+..
T Consensus         6 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   46 (271)
T 3tzq_B            6 TAELENKVAIITGACGGIGLETSRVLARAGARVVLADLPET   46 (271)
T ss_dssp             -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred             CcCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            34689999999995 88999999999999999999888754

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=95.13  E-value=0.037  Score=44.34  Aligned_cols=38  Identities=26%  Similarity=0.318  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .+.||++.|.|. |.||+++|+.|..-|++|+..+|+..
T Consensus         4 ~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~   42 (252)
T 3h7a_A            4 TPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGE   42 (252)
T ss_dssp             -CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            578999999994 68999999999999999999988653

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=95.13  E-value=0.03  Score=44.51  Aligned_cols=33  Identities=33%  Similarity=0.367  Sum_probs=28.4

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEE-EEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFI-SYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V-~~~~r~~  116 (204)
                      .+|||||+|.+|+.+++.+..-|+++ ..++++.
T Consensus         1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~   34 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRG   34 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSC
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCc
Confidence            37999999999999999998888997 5777764

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=95.11  E-value=0.02  Score=46.53  Aligned_cols=37  Identities=22%  Similarity=0.213  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCCC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAEK  117 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~~  117 (204)
                      .++| +++|+|.|..|++++..|...|+ +|..++|+..
T Consensus       106 ~~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~  143 (253)
T 3u62_A          106 EVKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIE  143 (253)
T ss_dssp             CCCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHH
T ss_pred             CCCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence            4678 99999999999999999999999 8999999754

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=95.10  E-value=0.036  Score=45.92  Aligned_cols=39  Identities=21%  Similarity=0.270  Sum_probs=34.8

Q ss_pred             ccccCCCEEEEEeCCh-HHHHHHHHHhhcCCEEEEEcCCC
Q 045521           78 TTKISGRSVGIIGLGR-IGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~-IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +.+++||++.|||.|. +|+.+|.+|...|++|+...++.
T Consensus       155 ~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t  194 (285)
T 3p2o_A          155 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT  194 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc
Confidence            4679999999999998 69999999999999998887654

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=95.09  E-value=0.025  Score=45.69  Aligned_cols=36  Identities=28%  Similarity=0.374  Sum_probs=32.5

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .+++|.|.|.|.||+.+++.|..-|.+|++.+|+..
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            468999999999999999999999999999988754

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=95.08  E-value=0.057  Score=43.10  Aligned_cols=58  Identities=16%  Similarity=0.210  Sum_probs=42.5

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCCC-----------CCcceeCHHHHHHHHH
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNTK-----------YKGALVDESELVSALL  137 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~~-----------~~G~lvd~~aL~~aL~  137 (204)
                      ++.||++.|.|. |.||+++|+.|..-|++|+..+|+......           +.+.+-|++++.++++
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~   73 (257)
T 3tpc_A            4 QLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELGAAVRFRNADVTNEADATAALA   73 (257)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC------------CEEEECCTTCHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEccCCCHHHHHHHHH
Confidence            588999999995 899999999999999999998887543211           0155566666655554

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=95.08  E-value=0.027  Score=43.72  Aligned_cols=54  Identities=19%  Similarity=0.163  Sum_probs=43.5

Q ss_pred             CEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCCC------CCcceeC-HHHHHHHHH
Q 045521           84 RSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNTK------YKGALVD-ESELVSALL  137 (204)
Q Consensus        84 ~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~------~~G~lvd-~~aL~~aL~  137 (204)
                      ++|.|.| .|.||+.+++.|..-|.+|+..+|+......      +.+.+-| .+++.++++
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~   62 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAKQLH   62 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCCTTEEEEECCTTSCHHHHHTTTT
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhcCCceEEEecccCCHHHHHHHHc
Confidence            3789999 8999999999999999999999987654322      1277888 888888776

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=95.07  E-value=0.028  Score=46.76  Aligned_cols=33  Identities=27%  Similarity=0.336  Sum_probs=30.4

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|+|||.|.||..+|..|..-|.+|..++|+.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            589999999999999999998899999999863

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=95.07  E-value=0.026  Score=47.64  Aligned_cols=36  Identities=36%  Similarity=0.545  Sum_probs=33.0

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .|++|.|+|.|.||+..+++++.+|++|++.+++..
T Consensus       179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~  214 (360)
T 1piw_A          179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR  214 (360)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            589999999999999999999999999999887654

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=95.06  E-value=0.047  Score=45.73  Aligned_cols=59  Identities=15%  Similarity=0.155  Sum_probs=44.2

Q ss_pred             cccCCCEEEEEe-CChHHHHHHHHHhhc-CCEEEEEcCCCCCCCC---------CCccee-CHHHHHHHHH
Q 045521           79 TKISGRSVGIIG-LGRIGMAVAKRAEAF-GCFISYRSRAEKPNTK---------YKGALV-DESELVSALL  137 (204)
Q Consensus        79 ~~l~g~tvGIvG-~G~IG~~va~~~~~f-g~~V~~~~r~~~~~~~---------~~G~lv-d~~aL~~aL~  137 (204)
                      ..+.+++|.|.| .|.||+.+++.|..- |.+|++.+|+......         +.|.+- |.+++.++++
T Consensus        20 ~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~   90 (372)
T 3slg_A           20 GSMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVK   90 (372)
T ss_dssp             ---CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHH
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhc
Confidence            347889999999 699999999999887 9999999987643211         116666 7777777776

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=95.05  E-value=0.022  Score=47.71  Aligned_cols=33  Identities=24%  Similarity=0.303  Sum_probs=30.2

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      .++|+|||.|.+|..+|..|..-|.+|..++|.
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            468999999999999999999889999999874

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=95.03  E-value=0.027  Score=49.40  Aligned_cols=39  Identities=10%  Similarity=0.055  Sum_probs=31.3

Q ss_pred             cccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           77 LTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        77 ~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++++..-++|+|||+|.+|..+|..+.. |.+|+++|+.+
T Consensus        30 ~~r~~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~   68 (432)
T 3pid_A           30 MGRGSEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQ   68 (432)
T ss_dssp             -----CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCH
T ss_pred             cccccCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCH
Confidence            3556667799999999999999999988 99999999864

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=95.03  E-value=0.029  Score=46.77  Aligned_cols=37  Identities=16%  Similarity=0.179  Sum_probs=31.3

Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhh-cCC-EEEEEcCCCC
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEA-FGC-FISYRSRAEK  117 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~-fg~-~V~~~~r~~~  117 (204)
                      ...++|||||+|.+|+.+++.+.. +|. +|.+|+|+..
T Consensus       133 ~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~  171 (312)
T 2i99_A          133 PSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKE  171 (312)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHH
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHH
Confidence            457899999999999999998864 587 8999998753

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=95.02  E-value=0.03  Score=45.05  Aligned_cols=57  Identities=11%  Similarity=0.207  Sum_probs=43.8

Q ss_pred             cCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCCC-----CCcceeCHHHHHHHHH
Q 045521           81 ISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNTK-----YKGALVDESELVSALL  137 (204)
Q Consensus        81 l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~-----~~G~lvd~~aL~~aL~  137 (204)
                      +.+|+|.|.| .|.||+++++.|..-|.+|+..+|+......     +.+.+-|.+++.++++
T Consensus         1 m~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~   63 (267)
T 3rft_A            1 MAMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEECVQCDLADANAVNAMVA   63 (267)
T ss_dssp             CCEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCCCTTEEEEECCTTCHHHHHHHHT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCccccCCCCEEEEcCCCCHHHHHHHHc
Confidence            3578999999 7999999999999999999998887643221     1166667777776665

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=95.02  E-value=0.047  Score=44.83  Aligned_cols=40  Identities=30%  Similarity=0.398  Sum_probs=34.3

Q ss_pred             cccccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           77 LTTKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        77 ~~~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +..+|.||++.|-|- +.||+++|+.|..-|++|+..+|+.
T Consensus        23 Ms~rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~   63 (273)
T 4fgs_A           23 MTQRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRK   63 (273)
T ss_dssp             --CTTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             hcchhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            345699999999995 5799999999999999999988864

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=95.02  E-value=0.031  Score=46.01  Aligned_cols=40  Identities=25%  Similarity=0.294  Sum_probs=35.1

Q ss_pred             ccccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           78 TTKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        78 ~~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      ..++.||++.|.|- |.||+++|+.|..-|++|+..+|+..
T Consensus        36 m~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~   76 (293)
T 3rih_A           36 MFDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPR   76 (293)
T ss_dssp             TTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            35689999999995 78999999999999999999888653

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=95.00  E-value=0.02  Score=45.66  Aligned_cols=38  Identities=24%  Similarity=0.350  Sum_probs=34.1

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .++.||++.|.|. |.||+++|+.|..-|++|+..+|+.
T Consensus         2 ~~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~   40 (247)
T 3rwb_A            2 ERLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINA   40 (247)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3589999999995 7899999999999999999988864

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=95.00  E-value=0.016  Score=49.08  Aligned_cols=32  Identities=19%  Similarity=0.115  Sum_probs=29.5

Q ss_pred             EEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +|+|||+|.+|..+|..|..-|.+|.+++|+.
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            89999999999999999988889999998864

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=94.97  E-value=0.042  Score=45.54  Aligned_cols=39  Identities=15%  Similarity=0.172  Sum_probs=34.4

Q ss_pred             ccccCCCEEEEEeCCh-HHHHHHHHHhhcCCEEEEEcCCC
Q 045521           78 TTKISGRSVGIIGLGR-IGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~-IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +.++.||++.|||.|. +|+.+|.+|...|++|+...++.
T Consensus       156 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t  195 (285)
T 3l07_A          156 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT  195 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc
Confidence            4579999999999998 69999999999999998876543

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=94.93  E-value=0.019  Score=50.50  Aligned_cols=41  Identities=15%  Similarity=0.156  Sum_probs=36.8

Q ss_pred             ccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           76 KLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        76 ~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      |...+++|++|.|+|.|.+|.+.++.|...|++|..+++..
T Consensus         5 P~~~~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~   45 (457)
T 1pjq_A            5 PIFCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (457)
T ss_dssp             EEEECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             eeEEECCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCC
Confidence            44567899999999999999999999999999999988753

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=94.93  E-value=0.019  Score=48.20  Aligned_cols=36  Identities=25%  Similarity=0.279  Sum_probs=31.2

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcC-------CEEEEEcCCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFG-------CFISYRSRAEK  117 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg-------~~V~~~~r~~~  117 (204)
                      ..++|+|||.|.+|..+|..+..-|       .+|..++|+..
T Consensus         7 ~~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            7 ASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            3468999999999999999997777       88999998754

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=94.93  E-value=0.054  Score=44.03  Aligned_cols=38  Identities=26%  Similarity=0.303  Sum_probs=34.3

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+++||++.|.|- |.||+++|+.|..-|++|+..+|+.
T Consensus        28 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   66 (276)
T 3r1i_A           28 FDLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHS   66 (276)
T ss_dssp             GCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999994 8999999999999999999988864

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=94.92  E-value=0.034  Score=44.87  Aligned_cols=64  Identities=20%  Similarity=0.254  Sum_probs=47.5

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHH---cCCceEEEeeCCCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALL---EDRLAAAVLDVFEHE  152 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~---~g~i~ga~lDV~~~E  152 (204)
                      .++.||++.|.|. |.||+++|+.|..-|++|+..+|+...          .+.+.+.++   .+++.....|+.+.+
T Consensus        16 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~----------~~~~~~~l~~~~~~~~~~~~~Dv~~~~   83 (266)
T 4egf_A           16 LRLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSE----------LDAARRALGEQFGTDVHTVAIDLAEPD   83 (266)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHH----------HHHHHHHHHHHHCCCEEEEECCTTSTT
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----------HHHHHHHHHHhcCCcEEEEEecCCCHH
Confidence            4689999999995 799999999999999999998886421          123333332   356667777887654

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=94.92  E-value=0.091  Score=42.63  Aligned_cols=39  Identities=21%  Similarity=0.285  Sum_probs=34.7

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .++.||++.|.|. |.||+++|+.|..-|++|+..+|+..
T Consensus        29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~   68 (275)
T 4imr_A           29 FGLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPG   68 (275)
T ss_dssp             HCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            4689999999995 79999999999999999999888653

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=94.92  E-value=0.031  Score=46.74  Aligned_cols=35  Identities=17%  Similarity=0.164  Sum_probs=31.0

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ...+|+|||.|++|..+|..|..-|.+|..++|++
T Consensus        13 ~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~   47 (335)
T 1z82_A           13 MEMRFFVLGAGSWGTVFAQMLHENGEEVILWARRK   47 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             cCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            35689999999999999999988899999999863

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=94.91  E-value=0.047  Score=45.17  Aligned_cols=63  Identities=16%  Similarity=0.116  Sum_probs=45.5

Q ss_pred             ccccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCC-------C---CCcceeCHHHHHHHHHcCC
Q 045521           78 TTKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNT-------K---YKGALVDESELVSALLEDR  140 (204)
Q Consensus        78 ~~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~-------~---~~G~lvd~~aL~~aL~~g~  140 (204)
                      ...+.+++|.|.| .|.||+.+++.|..-|.+|+..+|......       .   +.+.+-|.+++.++++.++
T Consensus        16 ~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~   89 (333)
T 2q1w_A           16 PRGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQ   89 (333)
T ss_dssp             -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHHHC
T ss_pred             eecCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhccC
Confidence            3467899999998 699999999999999999999888643210       1   1177778888888887643

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=94.91  E-value=0.036  Score=45.42  Aligned_cols=38  Identities=18%  Similarity=0.281  Sum_probs=34.6

Q ss_pred             cccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .++.||++.|+| .|.||+++++.|...|++|+..+|+.
T Consensus       115 ~~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~  153 (287)
T 1lu9_A          115 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL  153 (287)
T ss_dssp             SCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCH
Confidence            457899999999 99999999999999999998888864

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=94.90  E-value=0.037  Score=44.35  Aligned_cols=37  Identities=32%  Similarity=0.399  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++.||++.|.|. |.||+++|+.|..-|++|+..+|+.
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   41 (263)
T 3ai3_A            4 GISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQV   41 (263)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCH
Confidence            578999999994 8999999999999999999988864

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=94.90  E-value=0.079  Score=42.62  Aligned_cols=58  Identities=17%  Similarity=0.172  Sum_probs=45.2

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCCC---CCcceeCHHHHHHHHH
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNTK---YKGALVDESELVSALL  137 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~---~~G~lvd~~aL~~aL~  137 (204)
                      ++.||++.|.| .|.||+++|+.|..-|++|+..+|.......   +.+.+-|++++.++++
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~Dl~~~~~v~~~~~   66 (264)
T 2dtx_A            5 DLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPGEAKYDHIECDVTNPDQVKASID   66 (264)
T ss_dssp             GGTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCCSCSSEEEECCTTCHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCcccCCceEEEEecCCCHHHHHHHHH
Confidence            57899999999 5899999999999999999988886543211   1267777887766665

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=94.89  E-value=0.072  Score=42.68  Aligned_cols=60  Identities=25%  Similarity=0.322  Sum_probs=44.5

Q ss_pred             cccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCCCC---CcceeCHHHHHHHHHc
Q 045521           79 TKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNTKY---KGALVDESELVSALLE  138 (204)
Q Consensus        79 ~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~---~G~lvd~~aL~~aL~~  138 (204)
                      ..+.+|++.|.| -|.||+++|+.|..-|++|+..+|+.......   .+.+-|++++.++++.
T Consensus        17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~Dl~d~~~v~~~~~~   80 (253)
T 2nm0_A           17 RSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPEGFLAVKCDITDTEQVEQAYKE   80 (253)
T ss_dssp             ---CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSEEEECCTTSHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhhccceEEEecCCCHHHHHHHHHH
Confidence            468899999999 48999999999999999999888865432221   2677788877666653

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=94.89  E-value=0.041  Score=45.90  Aligned_cols=38  Identities=13%  Similarity=0.227  Sum_probs=34.4

Q ss_pred             ccccCCCEEEEEeCCh-HHHHHHHHHhhcCCEEEEEcCC
Q 045521           78 TTKISGRSVGIIGLGR-IGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~-IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      +.+++||++.|||.|. +|+.+|.+|...|++|+.+.++
T Consensus       160 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~  198 (300)
T 4a26_A          160 GIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSG  198 (300)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            4579999999999998 6999999999999999888764

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=94.87  E-value=0.063  Score=43.42  Aligned_cols=39  Identities=28%  Similarity=0.428  Sum_probs=34.6

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKP  118 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~  118 (204)
                      ++.||++.|.| -|.||+++|+.|..-|++|+..+|+...
T Consensus         3 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~   42 (274)
T 3e03_A            3 TLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVA   42 (274)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSC
T ss_pred             CCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchh
Confidence            57899999999 4799999999999999999998887643

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=94.86  E-value=0.062  Score=43.40  Aligned_cols=37  Identities=19%  Similarity=0.305  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEeC---ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL---GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~---G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+.||++.|.|.   |.||+++|+.|..-|++|+..+|+.
T Consensus         3 ~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~   42 (275)
T 2pd4_A            3 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE   42 (275)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence            478999999997   6999999999999999999888865

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=94.86  E-value=0.066  Score=42.56  Aligned_cols=38  Identities=21%  Similarity=0.259  Sum_probs=34.1

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      ++.+|++.|.| .|.||+++++.|..-|++|+..+|+..
T Consensus         9 ~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~   47 (265)
T 2o23_A            9 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNS   47 (265)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcH
Confidence            57899999998 589999999999999999999888754

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=94.86  E-value=0.023  Score=50.02  Aligned_cols=33  Identities=15%  Similarity=0.207  Sum_probs=30.1

Q ss_pred             CEEEEEeCChHHHHHHHHHhhc--CCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAF--GCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~f--g~~V~~~~r~~  116 (204)
                      ++|+|||+|.+|..+|..+...  |.+|++++++.
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~   40 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE   40 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            5899999999999999999877  89999999864

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=94.85  E-value=0.038  Score=45.12  Aligned_cols=39  Identities=23%  Similarity=0.283  Sum_probs=34.5

Q ss_pred             ccccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           78 TTKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ...+.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus        13 ~~~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~   52 (303)
T 1yxm_A           13 PGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKL   52 (303)
T ss_dssp             TTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4468999999998 58999999999999999999988864

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=94.84  E-value=0.043  Score=45.50  Aligned_cols=39  Identities=18%  Similarity=0.279  Sum_probs=34.6

Q ss_pred             ccccCCCEEEEEeCCh-HHHHHHHHHhhcCCEEEEEcCCC
Q 045521           78 TTKISGRSVGIIGLGR-IGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~-IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +.+++|+++.|||.|+ +|+-+|++|...|++|+.+.++.
T Consensus       154 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t  193 (288)
T 1b0a_A          154 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT  193 (288)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC
T ss_pred             CCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            4579999999999997 59999999999999998876554

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=94.84  E-value=0.25  Score=39.53  Aligned_cols=54  Identities=15%  Similarity=0.071  Sum_probs=41.7

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCceEEEeeCCC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFE  150 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~ga~lDV~~  150 (204)
                      .++|.|.|.|.||+.+++.|..-|.+|++.+|+...              .+.+....+.....|+.+
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~--------------~~~~~~~~~~~~~~D~~d   58 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQ--------------MEAIRASGAEPLLWPGEE   58 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGG--------------HHHHHHTTEEEEESSSSC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhh--------------hhhHhhCCCeEEEecccc
Confidence            479999999999999999999889999999987532              122333456666678765

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=94.82  E-value=0.029  Score=48.94  Aligned_cols=33  Identities=24%  Similarity=0.253  Sum_probs=30.4

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|+|||+|.+|..+|..+...|.+|+++++++
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~   33 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            379999999999999999999999999999864

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=94.78  E-value=0.044  Score=45.39  Aligned_cols=39  Identities=18%  Similarity=0.317  Sum_probs=34.4

Q ss_pred             ccccCCCEEEEEeCCh-HHHHHHHHHhhcCCEEEEEcCCC
Q 045521           78 TTKISGRSVGIIGLGR-IGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~-IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +.+++||++.|||.|. +|+.+|.+|...|++|+...++.
T Consensus       156 ~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T  195 (286)
T 4a5o_A          156 GADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT  195 (286)
T ss_dssp             TCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC
Confidence            4679999999999998 79999999999999998876543

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=94.77  E-value=0.08  Score=42.99  Aligned_cols=38  Identities=18%  Similarity=0.156  Sum_probs=34.1

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      +|+||++.|-|- +.||+++|+.|..-|++|+..+|+..
T Consensus         4 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~   42 (258)
T 4gkb_A            4 NLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAP   42 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcc
Confidence            689999999995 67999999999999999998888653

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=94.76  E-value=0.023  Score=46.68  Aligned_cols=31  Identities=23%  Similarity=0.338  Sum_probs=28.2

Q ss_pred             CEEEEEeCChHHHHHHHHHhhc-----C-CEEEEEcC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAF-----G-CFISYRSR  114 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~f-----g-~~V~~~~r  114 (204)
                      ++|+|||+|.+|..+|..|..-     | .+|.+++|
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            4899999999999999999876     8 89999987

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=94.74  E-value=0.062  Score=44.07  Aligned_cols=39  Identities=23%  Similarity=0.292  Sum_probs=34.8

Q ss_pred             ccccCCCEEEEEeCC---hHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           78 TTKISGRSVGIIGLG---RIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G---~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ...+.||++.|.|.+   .||+++|+.|..-|++|+..+|+.
T Consensus        25 ~~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~   66 (296)
T 3k31_A           25 GMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSE   66 (296)
T ss_dssp             CCTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             hhccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCCh
Confidence            346899999999986   899999999999999999888864

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=94.72  E-value=0.043  Score=42.55  Aligned_cols=55  Identities=18%  Similarity=0.221  Sum_probs=41.8

Q ss_pred             CCEEEEEe-CChHHHHHHHHHh-hcCCEEEEEcCCCC-CCC-------C---CCcceeCHHHHHHHHH
Q 045521           83 GRSVGIIG-LGRIGMAVAKRAE-AFGCFISYRSRAEK-PNT-------K---YKGALVDESELVSALL  137 (204)
Q Consensus        83 g~tvGIvG-~G~IG~~va~~~~-~fg~~V~~~~r~~~-~~~-------~---~~G~lvd~~aL~~aL~  137 (204)
                      -|++.|.| .|.||+++++.|. .-|.+|...+|+.. ...       .   +.+.+-|++++.++++
T Consensus         5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~   72 (221)
T 3r6d_A            5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVT   72 (221)
T ss_dssp             CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHT
T ss_pred             EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHc
Confidence            36899999 6999999999998 89999999988754 211       1   1166667777777765

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=94.71  E-value=0.07  Score=45.08  Aligned_cols=41  Identities=32%  Similarity=0.434  Sum_probs=36.0

Q ss_pred             ccccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCC
Q 045521           78 TTKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKP  118 (204)
Q Consensus        78 ~~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~  118 (204)
                      ...|.||++.|.|. |.||+++|+.|..-|++|+..+|+..+
T Consensus        40 ~~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~   81 (346)
T 3kvo_A           40 TGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQP   81 (346)
T ss_dssp             CSTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSC
T ss_pred             CCCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhh
Confidence            35689999999995 899999999999999999998887654

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=94.71  E-value=0.025  Score=46.91  Aligned_cols=33  Identities=18%  Similarity=0.337  Sum_probs=29.6

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|+|||.|.+|..+|..|..-|.+|..++|+.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            579999999999999999998899999998863

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=94.69  E-value=0.076  Score=42.89  Aligned_cols=60  Identities=22%  Similarity=0.299  Sum_probs=45.6

Q ss_pred             ccccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCCC----CCcceeCHHHHHHHHH
Q 045521           78 TTKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNTK----YKGALVDESELVSALL  137 (204)
Q Consensus        78 ~~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~~----~~G~lvd~~aL~~aL~  137 (204)
                      ..++.||++.|.|. |.||+++|+.|..-|++|+..+|.......    +...+-|++++.++++
T Consensus         9 ~~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~Dv~~~~~v~~~~~   73 (269)
T 3vtz_A            9 MEEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDVNVSDHFKIDVTNEEEVKEAVE   73 (269)
T ss_dssp             -CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--CTTSSEEEECCTTCHHHHHHHHH
T ss_pred             ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhccCceeEEEecCCCHHHHHHHHH
Confidence            45789999999996 789999999999999999998886543222    1267778877766655

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=94.68  E-value=0.083  Score=42.92  Aligned_cols=58  Identities=14%  Similarity=0.090  Sum_probs=43.9

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCCC----CCcceeCHHHHHHHHH
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNTK----YKGALVDESELVSALL  137 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~~----~~G~lvd~~aL~~aL~  137 (204)
                      +|+||++.|-|- +.||+++|+.|..-|++|+..+|+..+...    +.+.+-|++++.+..+
T Consensus         8 ~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~Dv~~~~~v~~~~~   70 (261)
T 4h15_A            8 NLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPEGLPEELFVEADLTTKEGCAIVAE   70 (261)
T ss_dssp             CCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTTSCTTTEEECCTTSHHHHHHHHH
T ss_pred             CCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhCCCcEEEEEcCCCCHHHHHHHHH
Confidence            689999999995 579999999999999999998886543211    1266677776654443

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=94.68  E-value=0.075  Score=42.71  Aligned_cols=59  Identities=17%  Similarity=0.182  Sum_probs=46.7

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCCC-----CCcceeCHHHHHHHHH
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNTK-----YKGALVDESELVSALL  137 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~~-----~~G~lvd~~aL~~aL~  137 (204)
                      .++.+|++.|.|. |.||+++|+.|..-|++|+..+|+..+...     +.+.+-|++++.++++
T Consensus        24 ~~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~Dv~d~~~v~~~~~   88 (260)
T 3un1_A           24 MRNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSADPDIHTVAGDISKPETADRIVR   88 (260)
T ss_dssp             HHTTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCCSSTTEEEEESCTTSHHHHHHHHH
T ss_pred             hCcCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhcccCceEEEEccCCCHHHHHHHHH
Confidence            4689999999995 789999999999999999999887654322     1277778888766665

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=94.66  E-value=0.027  Score=45.36  Aligned_cols=38  Identities=26%  Similarity=0.361  Sum_probs=34.1

Q ss_pred             cccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .++.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         6 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   44 (262)
T 3pk0_A            6 FDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRST   44 (262)
T ss_dssp             TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            468999999998 58999999999999999999988864

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=94.63  E-value=0.077  Score=43.22  Aligned_cols=40  Identities=30%  Similarity=0.491  Sum_probs=34.8

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKP  118 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~  118 (204)
                      .++.||++.|.|. |.||+++|+.|..-|++|+..+|+..+
T Consensus         5 m~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~   45 (285)
T 3sc4_A            5 MSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEP   45 (285)
T ss_dssp             -CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSC
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhh
Confidence            3589999999995 889999999999999999999887653

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=94.63  E-value=0.046  Score=43.52  Aligned_cols=37  Identities=27%  Similarity=0.341  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~   41 (247)
T 2jah_A            4 ALQGKVALITGASSGIGEATARALAAEGAAVAIAARRV   41 (247)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            47899999999 58999999999999999999888864

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=94.62  E-value=0.031  Score=46.88  Aligned_cols=38  Identities=21%  Similarity=0.298  Sum_probs=33.6

Q ss_pred             cccCCCEEEEEe-CChHHHHHHHHHhhc-CC-EEEEEcCCC
Q 045521           79 TKISGRSVGIIG-LGRIGMAVAKRAEAF-GC-FISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG-~G~IG~~va~~~~~f-g~-~V~~~~r~~  116 (204)
                      ..+.+|+|.|.| .|.||+.+++.|... |. +|++++|..
T Consensus        17 ~~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~   57 (344)
T 2gn4_A           17 NMLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDE   57 (344)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCH
T ss_pred             HhhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECCh
Confidence            457899999999 699999999999888 98 999998864

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=94.60  E-value=0.058  Score=43.06  Aligned_cols=38  Identities=18%  Similarity=0.180  Sum_probs=30.0

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+++||++.|.|. |.||+++|+.|..-|++|+..+|..
T Consensus         5 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   43 (257)
T 3tl3_A            5 MEIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRG   43 (257)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSC
T ss_pred             ceecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCch
Confidence            4689999999995 8999999999999999999888743

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=94.60  E-value=0.04  Score=48.44  Aligned_cols=33  Identities=15%  Similarity=0.388  Sum_probs=31.0

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|+|||+|.+|..+|..+...|.+|++++++.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence            589999999999999999999999999999875

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=94.59  E-value=0.051  Score=46.12  Aligned_cols=64  Identities=20%  Similarity=0.292  Sum_probs=48.0

Q ss_pred             CchhHHHHHHHHHHHHHhhHHHhcCCCCCCccccccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCC
Q 045521           46 LTDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRA  115 (204)
Q Consensus        46 ~~~~vAE~~l~~~L~~~R~~~~~~~w~~~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~  115 (204)
                      .....||.++-+=|.++|-    ..|.. .. ...|++++|.|||+|.+|..+|+.|...|. ++..+|+.
T Consensus         3 ~p~~~~~~~~~lnl~lm~w----Rll~~-~g-~~kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D   67 (340)
T 3rui_A            3 DPLKIADQSVDLNLKLMKW----RILPD-LN-LDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG   67 (340)
T ss_dssp             CHHHHHHHHHHHHHHHHHH----HTCTT-CC-HHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CHHHHHHHHHHHHHHHHHH----hhcch-hh-HHHHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Confidence            3456788888888888764    23332 11 236899999999999999999999999997 46666653

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=94.56  E-value=0.038  Score=46.98  Aligned_cols=36  Identities=31%  Similarity=0.569  Sum_probs=32.6

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .|.+|.|+|.|.||+..+++++.+|++|++.+++..
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~  229 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA  229 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            589999999999999999999999999988887643

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=94.55  E-value=0.037  Score=44.24  Aligned_cols=37  Identities=19%  Similarity=0.157  Sum_probs=32.9

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++.+|++.|.|. |.||+++|+.|..-|++|+..+|+.
T Consensus         4 ~~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~   41 (250)
T 3nyw_A            4 EKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSK   41 (250)
T ss_dssp             -CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            578999999995 8999999999999999999988864

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=94.54  E-value=0.024  Score=48.30  Aligned_cols=34  Identities=21%  Similarity=0.201  Sum_probs=29.6

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcC-------CEEEEEcCCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFG-------CFISYRSRAEK  117 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg-------~~V~~~~r~~~  117 (204)
                      ++|+|||.|.+|..+|..|..-|       .+|..++|+..
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            47999999999999999997666       89999988654

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=94.54  E-value=0.063  Score=43.00  Aligned_cols=38  Identities=24%  Similarity=0.484  Sum_probs=33.8

Q ss_pred             cccCCCEEEEEeC---ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL---GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~---G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..+.||++.|.|.   |.||+++|+.|..-|++|+..+|+.
T Consensus         4 ~~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~   44 (261)
T 2wyu_A            4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE   44 (261)
T ss_dssp             ECCTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCG
T ss_pred             cCCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3578999999997   6999999999999999999888764

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=94.54  E-value=0.052  Score=39.85  Aligned_cols=36  Identities=14%  Similarity=0.114  Sum_probs=31.4

Q ss_pred             cCCCEEEEEeC----ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           81 ISGRSVGIIGL----GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        81 l~g~tvGIvG~----G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++-++|+|||.    |++|+.+++.++..|.+|+.++++.
T Consensus        12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~   51 (138)
T 1y81_A           12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNY   51 (138)
T ss_dssp             --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTC
T ss_pred             cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCC
Confidence            56789999999    9999999999999999988888865

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=94.52  E-value=0.029  Score=42.98  Aligned_cols=35  Identities=29%  Similarity=0.370  Sum_probs=31.8

Q ss_pred             CCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|++|.|.| .|.||+.+++.++..|++|+..+++.
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~   73 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSD   73 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCH
Confidence            589999999 69999999999999999999888754

>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans}

Probab=94.51  E-value=0.028  Score=48.20  Aligned_cols=34  Identities=15%  Similarity=0.103  Sum_probs=30.4

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      -.++-|+|.|+++++++++++.+|++|+.+|+.+
T Consensus       199 ~~~L~I~GaGhva~aLa~la~~lgf~V~v~D~R~  232 (362)
T 3on5_A          199 KERLIIFGAGPDVPPLVTFASNVGFYTVVTDWRP  232 (362)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHHTEEEEEEESCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEECCCc
Confidence            4589999999999999999999999998887653

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=94.49  E-value=0.068  Score=44.57  Aligned_cols=111  Identities=14%  Similarity=0.104  Sum_probs=66.0

Q ss_pred             ccccCCCEEEEEeCCh-HHHHHHHHHhhcCCEEEEEcCCCCCCC----CCC--------cceeCHHHHHHHHHcCCceEE
Q 045521           78 TTKISGRSVGIIGLGR-IGMAVAKRAEAFGCFISYRSRAEKPNT----KYK--------GALVDESELVSALLEDRLAAA  144 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~-IG~~va~~~~~fg~~V~~~~r~~~~~~----~~~--------G~lvd~~aL~~aL~~g~i~ga  144 (204)
                      +.++.|+++.|||.|+ +|+-+|++|...|++|+.+.++.+...    ..+        ..+|..+-    ++.|   ..
T Consensus       160 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~~~ADIVI~Avg~p~~I~~~~----vk~G---av  232 (301)
T 1a4i_A          160 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEW----IKPG---AI  232 (301)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHHTTCSEEEECCCCTTCBCGGG----SCTT---CE
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCcccHHHHhccCCEEEECCCCcccCCHHH----cCCC---cE
Confidence            4579999999999997 699999999999999988865443210    011        22333332    2334   46


Q ss_pred             EeeCCCCC-CCC--C-C-CcC--------CCCceEEcccCCCCcHHHHHHHHHHHHHHHHHHHc
Q 045521          145 VLDVFEHE-PQV--P-E-ELF--------GLENVVLLPHAASGTEETRKATADIVIENLEACFL  195 (204)
Q Consensus       145 ~lDV~~~E-P~~--~-~-~l~--------~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~  195 (204)
                      .+||--+. +.+  . . .|.        .----.+||=-+|.-.=+..-+.+.+++..++++.
T Consensus       233 VIDVgi~~~~d~~~~~g~klvGDVdf~~v~~~a~~iTPVPGGVGpmTiamLl~Ntv~aa~~~~~  296 (301)
T 1a4i_A          233 VIDCGINYVPDDKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVESAKRFLE  296 (301)
T ss_dssp             EEECCCBC----------CCBCSBCHHHHTTTCSEECCSSSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEccCCCcccccccCCCeeeccccHHHhhhhceEeCCCCCCccHHHHHHHHHHHHHHHHHHhh
Confidence            77886532 110  0 0 111        11234689988876554445555555555555553

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=94.48  E-value=0.059  Score=44.40  Aligned_cols=36  Identities=11%  Similarity=0.063  Sum_probs=32.8

Q ss_pred             cCCCEEEEEeCCh-HHHHHHHHHhhcCCEEEEEcCCC
Q 045521           81 ISGRSVGIIGLGR-IGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        81 l~g~tvGIvG~G~-IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++||++.|||.|. +|+.+|.+|...|++|+.+.++.
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t  184 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKT  184 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            8999999999997 79999999999999998886644

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=94.47  E-value=0.044  Score=46.21  Aligned_cols=36  Identities=36%  Similarity=0.531  Sum_probs=32.9

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .|.+|.|+|.|.||+..+++++.+|++|++.+++..
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~  215 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNK  215 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChH
Confidence            689999999999999999999999999998887653

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=94.47  E-value=0.056  Score=44.68  Aligned_cols=39  Identities=18%  Similarity=0.217  Sum_probs=34.4

Q ss_pred             ccccCCCEEEEEeCChH-HHHHHHHHhhc--CCEEEEEcCCC
Q 045521           78 TTKISGRSVGIIGLGRI-GMAVAKRAEAF--GCFISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~I-G~~va~~~~~f--g~~V~~~~r~~  116 (204)
                      +.+++||++.|||.|+| |+-+|++|...  |++|+...++.
T Consensus       153 ~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t  194 (281)
T 2c2x_A          153 DISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT  194 (281)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC
T ss_pred             CCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch
Confidence            45799999999999985 99999999998  89998886654

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=94.46  E-value=0.029  Score=44.97  Aligned_cols=37  Identities=22%  Similarity=0.266  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|+||++.|.|- |.||+++|+.|..-|++|+..+|+.
T Consensus         3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   40 (257)
T 3imf_A            3 AMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTK   40 (257)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            588999999995 7899999999999999999988864

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=94.46  E-value=0.034  Score=44.55  Aligned_cols=37  Identities=22%  Similarity=0.218  Sum_probs=33.1

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+.||++.|.| .|.||+++++.|..-|++|+..+|+.
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   41 (260)
T 2z1n_A            4 GIQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNR   41 (260)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            47899999999 58999999999999999999988864

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=94.42  E-value=0.048  Score=43.80  Aligned_cols=38  Identities=32%  Similarity=0.308  Sum_probs=33.5

Q ss_pred             cccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .++.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         9 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   47 (267)
T 1iy8_A            9 TRFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSS   47 (267)
T ss_dssp             -CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            358899999998 58999999999999999999988864

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=94.42  E-value=0.035  Score=47.29  Aligned_cols=35  Identities=23%  Similarity=0.228  Sum_probs=31.6

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..++|+|||.|.+|..+|..|..-|.+|..|+|++
T Consensus        28 ~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~   62 (356)
T 3k96_A           28 FKHPIAILGAGSWGTALALVLARKGQKVRLWSYES   62 (356)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred             cCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            34689999999999999999999999999999863

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=94.40  E-value=0.043  Score=48.31  Aligned_cols=34  Identities=26%  Similarity=0.390  Sum_probs=31.0

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      =++|+|||.|.+|..+|..+..-|.+|+.++++.
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~   70 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDP   70 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            4689999999999999999999999999998764

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=94.38  E-value=0.029  Score=45.22  Aligned_cols=39  Identities=26%  Similarity=0.331  Sum_probs=31.8

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .++.||++.|.|. |.||+++|+.|..-|++|+..+|+..
T Consensus        23 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   62 (260)
T 3gem_A           23 MTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEH   62 (260)
T ss_dssp             ----CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            4689999999995 88999999999999999999888753

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=94.37  E-value=0.16  Score=41.08  Aligned_cols=39  Identities=21%  Similarity=0.165  Sum_probs=34.6

Q ss_pred             ccccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           78 TTKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ...+.||++.|.|. |.||+++|+.|..-|++|+..+|+.
T Consensus         6 ~~~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~   45 (286)
T 3uve_A            6 TGRVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICK   45 (286)
T ss_dssp             CCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CcccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccc
Confidence            45689999999995 6899999999999999999988764

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=94.37  E-value=0.076  Score=43.75  Aligned_cols=60  Identities=17%  Similarity=0.180  Sum_probs=47.0

Q ss_pred             CCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCC------------C---CCcceeCHHHHHHHHHcCCc
Q 045521           82 SGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNT------------K---YKGALVDESELVSALLEDRL  141 (204)
Q Consensus        82 ~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~------------~---~~G~lvd~~aL~~aL~~g~i  141 (204)
                      .+++|.|.| .|.||+++++.|..-|.+|+..+|......            .   +.+.+-|.+++.++++.+++
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~   79 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPI   79 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCC
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCC
Confidence            468999999 699999999999999999999988654321            1   12777788888888886543

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=94.37  E-value=0.049  Score=46.16  Aligned_cols=36  Identities=19%  Similarity=0.335  Sum_probs=32.3

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAEK  117 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~~  117 (204)
                      .|++|.|+|.|.||+..+++++.+|+ +|+..+++..
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~  231 (376)
T 1e3i_A          195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE  231 (376)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH
Confidence            58999999999999999999999999 7988876543

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=94.37  E-value=0.2  Score=40.30  Aligned_cols=38  Identities=34%  Similarity=0.225  Sum_probs=33.5

Q ss_pred             ccccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           78 TTKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        78 ~~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      ..++.||++.|.|- |.||+++|+.|..-|++|+..+|.
T Consensus         6 ~~~l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~   44 (277)
T 3tsc_A            6 AGKLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIA   44 (277)
T ss_dssp             -CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             ccccCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEecc
Confidence            34689999999995 789999999999999999998875

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=94.35  E-value=0.043  Score=44.39  Aligned_cols=38  Identities=26%  Similarity=0.278  Sum_probs=34.5

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .++.||++.|.|. |.||+++|+.|..-|++|+..+|+.
T Consensus        26 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~   64 (281)
T 3ppi_A           26 KQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAA   64 (281)
T ss_dssp             GGGTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             hccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCh
Confidence            5789999999995 8999999999999999999988864

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=94.34  E-value=0.05  Score=45.08  Aligned_cols=32  Identities=25%  Similarity=0.355  Sum_probs=29.5

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|+|||.|.||..+|..|. -|.+|..++|+.
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence            68999999999999999999 899999999864

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=94.34  E-value=0.051  Score=46.06  Aligned_cols=36  Identities=22%  Similarity=0.388  Sum_probs=32.4

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAEK  117 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~~  117 (204)
                      .|++|.|+|.|.||+..+++++.+|+ +|+..+++..
T Consensus       192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~  228 (374)
T 1cdo_A          192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPD  228 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHH
Confidence            58999999999999999999999999 8988876643

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=94.33  E-value=0.051  Score=45.46  Aligned_cols=35  Identities=26%  Similarity=0.413  Sum_probs=32.4

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|++|.|+|.|.||+.++++++.+|++|+..+++.
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~  198 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD  198 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            58899999999999999999999999999988764

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=94.33  E-value=0.043  Score=47.39  Aligned_cols=32  Identities=9%  Similarity=0.158  Sum_probs=29.2

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|+|||+|.+|..+|..|.. |.+|++++++.
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~   32 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP   32 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence            379999999999999999988 99999999864

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=94.32  E-value=0.05  Score=43.77  Aligned_cols=38  Identities=18%  Similarity=0.261  Sum_probs=33.9

Q ss_pred             cccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .++.||++.|.| -|.||+++|+.|..-|++|+..+|+.
T Consensus         4 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~   42 (265)
T 3lf2_A            4 YDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDG   42 (265)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            368999999998 47899999999999999999988864

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=94.32  E-value=0.054  Score=42.96  Aligned_cols=37  Identities=19%  Similarity=0.275  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+.+|++.|.| .|.||+++++.|..-|++|+..+|+.
T Consensus        10 ~l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~   47 (260)
T 3awd_A           10 RLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDE   47 (260)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999998 58999999999999999999988864

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=94.32  E-value=0.08  Score=44.01  Aligned_cols=59  Identities=19%  Similarity=0.195  Sum_probs=46.4

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCC----------C---CCcceeCHHHHHHHHHc
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNT----------K---YKGALVDESELVSALLE  138 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~----------~---~~G~lvd~~aL~~aL~~  138 (204)
                      .+.+++|.|.| .|.||+.+++.|..-|.+|+..+|+.....          .   +.+.+-|.+++.++++.
T Consensus         6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~   78 (357)
T 1rkx_A            6 FWQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIRE   78 (357)
T ss_dssp             HHTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHH
T ss_pred             hhCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHh
Confidence            36789999999 699999999999999999999988654321          1   11777788888877764

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=94.31  E-value=0.038  Score=49.08  Aligned_cols=34  Identities=24%  Similarity=0.390  Sum_probs=31.1

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      -++|||||.|.+|..+|..+..-|.+|+.++++.
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~   38 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISA   38 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            4689999999999999999999999999999864

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=94.30  E-value=0.021  Score=45.20  Aligned_cols=34  Identities=12%  Similarity=0.128  Sum_probs=29.3

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..+++.|+|+|.+|+.+++.|...|. |+++++.+
T Consensus         8 ~~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~   41 (234)
T 2aef_A            8 KSRHVVICGWSESTLECLRELRGSEV-FVLAEDEN   41 (234)
T ss_dssp             --CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGG
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCe-EEEEECCH
Confidence            35689999999999999999999998 99888764

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=94.30  E-value=0.025  Score=46.51  Aligned_cols=33  Identities=27%  Similarity=0.288  Sum_probs=29.7

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|+|||.|.+|..+|..|..-|.+|..++|+.
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            589999999999999999988888999888864

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=94.30  E-value=0.066  Score=42.25  Aligned_cols=36  Identities=28%  Similarity=0.404  Sum_probs=32.9

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      ++.||++.|.| .|.||+++++.|..-|++|+..+|+
T Consensus         4 ~l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~   40 (258)
T 3afn_B            4 DLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRK   40 (258)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCC
Confidence            57899999998 5899999999999999999998886

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=94.29  E-value=0.066  Score=43.46  Aligned_cols=37  Identities=19%  Similarity=0.309  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEeC---ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL---GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~---G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+.||++.|.|.   |.||+++|+.|..-|++|+..+|+.
T Consensus        18 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~   57 (285)
T 2p91_A           18 LLEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATP   57 (285)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCH
Confidence            488999999997   6999999999999999999888764

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=94.29  E-value=0.17  Score=42.63  Aligned_cols=57  Identities=14%  Similarity=0.117  Sum_probs=45.2

Q ss_pred             cCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCCC--------CCcceeCHHHHHHHHH
Q 045521           81 ISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNTK--------YKGALVDESELVSALL  137 (204)
Q Consensus        81 l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~~--------~~G~lvd~~aL~~aL~  137 (204)
                      ..+++|.|.|. |.||+.+++.|..-|.+|+..+|.......        +.+.+-|.+++.++++
T Consensus        27 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~   92 (379)
T 2c5a_A           27 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTE   92 (379)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHT
T ss_pred             ccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhC
Confidence            46789999997 999999999999899999999886543211        1177778888888875

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=94.29  E-value=0.055  Score=45.02  Aligned_cols=58  Identities=21%  Similarity=0.115  Sum_probs=43.1

Q ss_pred             cCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCC------------CC---CCcceeCHHHHHHHHHc
Q 045521           81 ISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPN------------TK---YKGALVDESELVSALLE  138 (204)
Q Consensus        81 l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~------------~~---~~G~lvd~~aL~~aL~~  138 (204)
                      +..++|.|.|. |.||+.+++.|..-|.+|...+|+....            ..   ..|.+-|.++|.+++++
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~   81 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKE   81 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhh
Confidence            45789999997 9999999999999999999998865211            01   11777778888887774

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=94.29  E-value=0.053  Score=45.95  Aligned_cols=35  Identities=26%  Similarity=0.416  Sum_probs=32.0

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~  116 (204)
                      .|++|.|+|.|.||+..+++++.+|+ +|++.+++.
T Consensus       191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~  226 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINK  226 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence            58999999999999999999999999 898887654

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=94.28  E-value=0.046  Score=46.29  Aligned_cols=35  Identities=23%  Similarity=0.388  Sum_probs=31.9

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~  116 (204)
                      .|++|.|+|.|.||+..+++++.+|+ +|+..+++.
T Consensus       191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~  226 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK  226 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCH
Confidence            58999999999999999999999999 798887654

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=94.27  E-value=0.054  Score=43.33  Aligned_cols=38  Identities=24%  Similarity=0.252  Sum_probs=34.0

Q ss_pred             cccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..+.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         4 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   42 (259)
T 4e6p_A            4 KRLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDI   42 (259)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            468899999999 48999999999999999999988864

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=94.26  E-value=0.081  Score=43.83  Aligned_cols=38  Identities=16%  Similarity=0.107  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .+.+++|.|.| .|.||+.+++.|..-|.+|++.+|...
T Consensus        22 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   60 (351)
T 3ruf_A           22 IFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFST   60 (351)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             CCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            46789999999 599999999999999999999988653

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=94.25  E-value=0.056  Score=45.37  Aligned_cols=35  Identities=34%  Similarity=0.628  Sum_probs=31.6

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|++|.|+|.|.||+..+++++.+|++|++.+++.
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~  202 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP  202 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCH
Confidence            58999999999999999999999999998877653

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=94.25  E-value=0.023  Score=46.23  Aligned_cols=38  Identities=18%  Similarity=0.273  Sum_probs=34.1

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+|+||++.|-|- +.||+++|+.|..-|++|+..+|+.
T Consensus         5 f~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~   43 (255)
T 4g81_D            5 FDLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRA   43 (255)
T ss_dssp             TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4799999999995 6799999999999999999988864

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=94.21  E-value=0.069  Score=43.55  Aligned_cols=37  Identities=14%  Similarity=0.151  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+.+|+|.|||-|.||-++|..++.+|.+|..+.+..
T Consensus       142 ~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  178 (312)
T 4gcm_A          142 FFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRD  178 (312)
T ss_dssp             GGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSS
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeccc
Confidence            4568999999999999999999999999998887654

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=94.21  E-value=0.042  Score=43.04  Aligned_cols=58  Identities=19%  Similarity=0.221  Sum_probs=45.4

Q ss_pred             cCCCEEEEEe-CChHHHHHHHHHhhc--CCEEEEEcCCCCC------CCC-CCcceeCHHHHHHHHHc
Q 045521           81 ISGRSVGIIG-LGRIGMAVAKRAEAF--GCFISYRSRAEKP------NTK-YKGALVDESELVSALLE  138 (204)
Q Consensus        81 l~g~tvGIvG-~G~IG~~va~~~~~f--g~~V~~~~r~~~~------~~~-~~G~lvd~~aL~~aL~~  138 (204)
                      ..+++|.|.| .|.||+.+++.|..-  |.+|+..+|+...      ... +.+.+-|.+++.++++.
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~   69 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQG   69 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTT
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcCCCeeEEEecCCCHHHHHHHHcC
Confidence            4578999999 699999999999888  8999998886422      111 12777888999888864

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=94.21  E-value=0.066  Score=43.54  Aligned_cols=40  Identities=18%  Similarity=0.240  Sum_probs=32.1

Q ss_pred             cccccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           77 LTTKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        77 ~~~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ...++.||++.|.| -|.||+++|+.|..-|++|+..+|+.
T Consensus        17 ~~~~l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~   57 (288)
T 2x9g_A           17 RGSHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNS   57 (288)
T ss_dssp             -----CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSC
T ss_pred             CCcCCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            34568999999999 58999999999999999999888865

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=94.19  E-value=0.045  Score=44.21  Aligned_cols=38  Identities=26%  Similarity=0.248  Sum_probs=34.0

Q ss_pred             cccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .++.+|++.|.| .|.||+++++.|..-|++|+..+|+.
T Consensus        28 ~~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~   66 (279)
T 1xg5_A           28 ERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTV   66 (279)
T ss_dssp             GGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCh
Confidence            458999999998 58999999999999999999988864

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=94.19  E-value=0.16  Score=41.15  Aligned_cols=63  Identities=19%  Similarity=0.255  Sum_probs=47.6

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHH--cCCceEEEeeCCCCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALL--EDRLAAAVLDVFEHEP  153 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~--~g~i~ga~lDV~~~EP  153 (204)
                      .+|+||++.|-|- +.||+++|+.|..-|++|+..+|...            +...+.++  .++......||.+.+-
T Consensus         5 f~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~------------~~~~~~~~~~g~~~~~~~~Dv~d~~~   70 (247)
T 4hp8_A            5 FSLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAP------------DETLDIIAKDGGNASALLIDFADPLA   70 (247)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCC------------HHHHHHHHHTTCCEEEEECCTTSTTT
T ss_pred             cCCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcH------------HHHHHHHHHhCCcEEEEEccCCCHHH
Confidence            4799999999985 68999999999999999998887531            22333333  2567778889987653

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=94.17  E-value=0.06  Score=43.13  Aligned_cols=38  Identities=29%  Similarity=0.370  Sum_probs=33.6

Q ss_pred             cccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..+.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   41 (262)
T 1zem_A            3 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNR   41 (262)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            357899999998 57999999999999999999888764

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=94.17  E-value=0.06  Score=45.31  Aligned_cols=35  Identities=29%  Similarity=0.376  Sum_probs=31.9

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~  116 (204)
                      .|.+|.|+|.|.||+..+++++.+|+ +|++.+++.
T Consensus       171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~  206 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA  206 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            58899999999999999999999999 898887654

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=94.16  E-value=0.054  Score=45.56  Aligned_cols=35  Identities=20%  Similarity=0.160  Sum_probs=31.0

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .-++|+|||.|-+|+.+|..+..-|++|..+|+++
T Consensus         5 ~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~   39 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP   39 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence            35689999999999999999999999999999864

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=94.16  E-value=0.051  Score=45.98  Aligned_cols=36  Identities=25%  Similarity=0.379  Sum_probs=32.3

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAEK  117 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~~  117 (204)
                      .|++|.|+|.|.||+..+++++.+|+ +|+..+++..
T Consensus       190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~  226 (373)
T 2fzw_A          190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKD  226 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH
Confidence            58999999999999999999999999 7988876543

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=94.15  E-value=0.058  Score=43.01  Aligned_cols=38  Identities=24%  Similarity=0.301  Sum_probs=34.1

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .++.||++.|.|. |.||+++|+.|..-|++|+..+|+.
T Consensus         5 m~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~   43 (261)
T 3n74_A            5 MSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDK   43 (261)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCH
Confidence            4689999999995 7899999999999999999998864

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=94.15  E-value=0.057  Score=43.37  Aligned_cols=39  Identities=21%  Similarity=0.322  Sum_probs=34.1

Q ss_pred             ccccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           78 TTKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ...|.||++.|.|. |.||+++|+.|..-|++|+..+|+.
T Consensus         6 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   45 (264)
T 3ucx_A            6 GGLLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTV   45 (264)
T ss_dssp             -CTTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCH
Confidence            44689999999995 6899999999999999999988864

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=94.14  E-value=0.11  Score=46.04  Aligned_cols=77  Identities=22%  Similarity=0.299  Sum_probs=53.3

Q ss_pred             CCCEEEEEeCChHHHH-HHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCcC
Q 045521           82 SGRSVGIIGLGRIGMA-VAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELF  160 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~-va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l~  160 (204)
                      ..|+|.|||.|.+|.. +|+.|+..|.+|.++|....             ...+.|++-.+     .++...  .+..+.
T Consensus        21 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~-------------~~~~~l~~~gi-----~~~~g~--~~~~~~   80 (494)
T 4hv4_A           21 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPN-------------SVTQHLTALGA-----QIYFHH--RPENVL   80 (494)
T ss_dssp             -CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCC-------------HHHHHHHHTTC-----EEESSC--CGGGGT
T ss_pred             cCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCC-------------HHHHHHHHCCC-----EEECCC--CHHHcC
Confidence            3589999999999996 89999999999999987532             23344554323     222211  112345


Q ss_pred             CCCceEEcccCCCCcHHH
Q 045521          161 GLENVVLLPHAASGTEET  178 (204)
Q Consensus       161 ~~~nvilTPH~a~~t~~~  178 (204)
                      +.+-|++||.+.-...+.
T Consensus        81 ~~d~vV~Spgi~~~~p~~   98 (494)
T 4hv4_A           81 DASVVVVSTAISADNPEI   98 (494)
T ss_dssp             TCSEEEECTTSCTTCHHH
T ss_pred             CCCEEEECCCCCCCCHHH
Confidence            678899999998776653

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=94.11  E-value=0.049  Score=47.86  Aligned_cols=35  Identities=17%  Similarity=0.176  Sum_probs=32.0

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+++|+|+|.|.||+.+++.|...|.+|..++|+.
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~   36 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL   36 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCH
Confidence            57899999999999999999999999999888864

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=94.09  E-value=0.092  Score=41.69  Aligned_cols=59  Identities=24%  Similarity=0.267  Sum_probs=45.0

Q ss_pred             cccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCCC---CCcceeCHHHHHHHHH
Q 045521           79 TKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNTK---YKGALVDESELVSALL  137 (204)
Q Consensus        79 ~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~---~~G~lvd~~aL~~aL~  137 (204)
                      .++.+|++.|.| -|.||+++++.|..-|++|+..+|+......   +.+.+-|++++.++++
T Consensus        11 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~D~~~~~~~~~~~~   73 (247)
T 1uzm_A           11 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVEVDVTDSDAVDRAFT   73 (247)
T ss_dssp             CCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSEEEECCTTCHHHHHHHHH
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHhcCeeccCCCHHHHHHHHH
Confidence            458899999999 5899999999999999999998886543222   2256667777666554

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=94.07  E-value=0.061  Score=43.76  Aligned_cols=38  Identities=18%  Similarity=0.219  Sum_probs=34.2

Q ss_pred             cccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..+.||++.|.| .|.||+++++.|..-|++|+..+|+.
T Consensus        22 ~~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~   60 (302)
T 1w6u_A           22 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   60 (302)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            468999999999 58999999999999999999988864

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=94.06  E-value=0.051  Score=45.56  Aligned_cols=35  Identities=31%  Similarity=0.395  Sum_probs=32.5

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~  116 (204)
                      .|++|.|+|.|.||+.+++.++.+|+ +|++.+++.
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~  202 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSD  202 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            79999999999999999999999999 999888754

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=94.04  E-value=0.1  Score=41.43  Aligned_cols=38  Identities=18%  Similarity=0.302  Sum_probs=33.7

Q ss_pred             cccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..+.+|++.|.| .|.||+++++.|..-|++|+..+|+.
T Consensus        10 ~~~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~   48 (265)
T 1h5q_A           10 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSA   48 (265)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcc
Confidence            358899999998 58999999999999999999988854

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=94.03  E-value=0.065  Score=43.40  Aligned_cols=37  Identities=22%  Similarity=0.274  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++.+|++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus        19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   56 (277)
T 2rhc_B           19 TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGE   56 (277)
T ss_dssp             CTTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            58899999998 58999999999999999999988864

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=94.02  E-value=0.064  Score=44.09  Aligned_cols=38  Identities=21%  Similarity=0.293  Sum_probs=34.2

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .++.||++.|.|. |.||+++|+.|..-|++|+..+|+.
T Consensus        27 ~~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~   65 (301)
T 3tjr_A           27 SGFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQ   65 (301)
T ss_dssp             CCSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             hccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4589999999995 7899999999999999999988864

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=94.02  E-value=0.059  Score=44.96  Aligned_cols=35  Identities=26%  Similarity=0.380  Sum_probs=32.4

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|++|.|+|.|.||...+++++.+|++|++.+++.
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~  200 (340)
T 3s2e_A          166 PGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDD  200 (340)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            68999999999999999999999999999987754

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=94.01  E-value=0.061  Score=45.43  Aligned_cols=35  Identities=23%  Similarity=0.274  Sum_probs=32.4

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|++|.|+|.|.||...+++++.+|++|++.+++.
T Consensus       189 ~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~  223 (363)
T 3uog_A          189 AGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSR  223 (363)
T ss_dssp             TTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCc
Confidence            58999999999999999999999999999888754

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=93.99  E-value=0.12  Score=41.78  Aligned_cols=60  Identities=22%  Similarity=0.188  Sum_probs=44.4

Q ss_pred             ccccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCCC---CCcceeCHHHHHHHHH
Q 045521           78 TTKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNTK---YKGALVDESELVSALL  137 (204)
Q Consensus        78 ~~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~~---~~G~lvd~~aL~~aL~  137 (204)
                      ..++.||++.|.|. |.||+++|+.|..-|++|+..+|.......   ..+.+-|.+++.++++
T Consensus        23 m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~Dv~~~~~~~~~~~   86 (266)
T 3uxy_A           23 MQGFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAADLHLPGDLREAAYADGLPG   86 (266)
T ss_dssp             ---CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSCCSEECCCCTTSHHHHHHHHH
T ss_pred             hhCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHhhhccCcCCCCHHHHHHHHH
Confidence            35689999999995 789999999999999999999887543221   2267777776655544

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=93.98  E-value=0.1  Score=45.63  Aligned_cols=37  Identities=19%  Similarity=0.296  Sum_probs=32.1

Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      -.|+++.|||+|.+|..+|..|...|.+|++||+++.
T Consensus         9 ~~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~   45 (431)
T 3ojo_A            9 HHGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQ   45 (431)
T ss_dssp             ---CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             ccCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4789999999999999999999999999999998754

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=93.98  E-value=0.046  Score=43.78  Aligned_cols=38  Identities=16%  Similarity=0.154  Sum_probs=34.0

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .++.||++.|.|. |.||+++|+.|..-|++|+..+|+.
T Consensus         8 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   46 (256)
T 3gaf_A            8 FHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKS   46 (256)
T ss_dssp             TCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999995 8899999999999999999888864

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=93.98  E-value=0.18  Score=39.72  Aligned_cols=59  Identities=15%  Similarity=0.082  Sum_probs=44.2

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCCC----CCcceeCHHHHHHHHHc
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNTK----YKGALVDESELVSALLE  138 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~----~~G~lvd~~aL~~aL~~  138 (204)
                      ...+|++.|.| -|.||+++++.|..-|++|+..+|+......    +.+.+-|++++.++++.
T Consensus         4 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~D~~~~~~v~~~~~~   67 (241)
T 1dhr_A            4 SGEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIVKMTDSFTEQADQVTAE   67 (241)
T ss_dssp             --CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTSSEEEECCCCSCHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhccCCcEEEEcCCCCHHHHHHHHHH
Confidence            35789999999 5899999999999999999998887543221    22667777777666653

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=93.97  E-value=0.24  Score=39.89  Aligned_cols=37  Identities=27%  Similarity=0.162  Sum_probs=33.5

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      ..+.||++.|.|- |.||+++|+.|..-|++|+..+|.
T Consensus        11 ~~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~   48 (280)
T 3pgx_A           11 GSLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDIC   48 (280)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecc
Confidence            4689999999995 789999999999999999998874

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=93.97  E-value=0.072  Score=43.92  Aligned_cols=32  Identities=22%  Similarity=0.357  Sum_probs=30.6

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEc
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRS  113 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~  113 (204)
                      .|++|.|+|.|.||+..+++++.+|++|++.+
T Consensus       142 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~  173 (315)
T 3goh_A          142 KQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS  173 (315)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE
Confidence            58999999999999999999999999999888

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=93.97  E-value=0.11  Score=45.77  Aligned_cols=61  Identities=23%  Similarity=0.286  Sum_probs=42.3

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCC-c--cee--C-HHHHHHHHHcCCce
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYK-G--ALV--D-ESELVSALLEDRLA  142 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~-G--~lv--d-~~aL~~aL~~g~i~  142 (204)
                      +=++|+|||+|-+|.-+|..+...|.+|+++|.......... |  .+.  . ++.|.+++++|++.
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~   86 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLS   86 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEE
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCee
Confidence            346999999999999999999989999999987643210000 1  011  1 34455678888886

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=93.97  E-value=0.054  Score=43.87  Aligned_cols=39  Identities=23%  Similarity=0.204  Sum_probs=33.7

Q ss_pred             ccccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           78 TTKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..++.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         6 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   45 (281)
T 3svt_A            6 QLSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNP   45 (281)
T ss_dssp             --CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3468999999999 58999999999999999999988864

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=93.96  E-value=0.12  Score=40.94  Aligned_cols=38  Identities=18%  Similarity=0.183  Sum_probs=33.7

Q ss_pred             cccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .++.+|++.|.| .|.||+++++.|..-|++|+..+|+.
T Consensus         3 ~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~   41 (264)
T 2pd6_A            3 NRLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDR   41 (264)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCh
Confidence            357899999998 58999999999999999999988764

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=93.94  E-value=0.16  Score=40.95  Aligned_cols=39  Identities=23%  Similarity=0.289  Sum_probs=34.6

Q ss_pred             cccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           79 TKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        79 ~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .++.||++.|.| -|.||+++|+.|..-|++|+..+|+..
T Consensus         6 ~~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~   45 (281)
T 3s55_A            6 ADFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCEN   45 (281)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSC
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCcc
Confidence            468999999999 578999999999999999999888643

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=93.93  E-value=0.043  Score=45.02  Aligned_cols=36  Identities=22%  Similarity=0.296  Sum_probs=32.7

Q ss_pred             CCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           82 SGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        82 ~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .|++|.|+|. |.||+.+++.++.+|++|+..+++..
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~  161 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPE  161 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5899999998 99999999999999999999887643

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=93.93  E-value=0.092  Score=41.24  Aligned_cols=57  Identities=18%  Similarity=0.122  Sum_probs=42.9

Q ss_pred             cCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCCC----CCcceeCHHHHHHHHH
Q 045521           81 ISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNTK----YKGALVDESELVSALL  137 (204)
Q Consensus        81 l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~----~~G~lvd~~aL~~aL~  137 (204)
                      +.+|++.|.| -|.||+++++.|..-|++|+..+|+......    +.+.+-|++++.++++
T Consensus         1 m~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~D~~~~~~~~~~~~   62 (236)
T 1ooe_A            1 MSSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDGNKNWTEQEQSILE   62 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTSSEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccccccccEEEeCCCCCHHHHHHHHH
Confidence            4689999998 5899999999999999999998887543221    2266667777665554

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=93.91  E-value=0.04  Score=44.85  Aligned_cols=38  Identities=26%  Similarity=0.449  Sum_probs=32.9

Q ss_pred             cccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .++.||++.|.| -|.||+++|+.|..-|++|+..+|+.
T Consensus        25 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~   63 (277)
T 3gvc_A           25 PDLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDG   63 (277)
T ss_dssp             --CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            468999999998 57899999999999999999988864

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=93.89  E-value=0.055  Score=43.34  Aligned_cols=37  Identities=24%  Similarity=0.345  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++.||++.|.|. |.||+++|+.|..-|++|+..+|+.
T Consensus         5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~   42 (255)
T 4eso_A            5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNE   42 (255)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            589999999995 7999999999999999999988864

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=93.87  E-value=0.073  Score=42.87  Aligned_cols=38  Identities=18%  Similarity=0.132  Sum_probs=34.2

Q ss_pred             cccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .++.+|++.|.| .|.||+++++.|...|++|+..+|..
T Consensus        27 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~   65 (272)
T 1yb1_A           27 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINK   65 (272)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCH
Confidence            468999999998 58999999999999999999988864

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=93.87  E-value=0.057  Score=42.67  Aligned_cols=37  Identities=16%  Similarity=0.249  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++.+|++.|.|. |.||+++|+.|..-|++|+..+|+.
T Consensus         2 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~   39 (247)
T 3lyl_A            2 SLNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQ   39 (247)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            478999999994 8999999999999999999988864

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=93.85  E-value=0.22  Score=39.42  Aligned_cols=58  Identities=19%  Similarity=0.159  Sum_probs=44.6

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCC-C---CCcceeCHHHHHHHHH
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNT-K---YKGALVDESELVSALL  137 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~-~---~~G~lvd~~aL~~aL~  137 (204)
                      ++.||++.|.|. |.||+++++.|..-|++|+..+|+..... .   +.+.+-|++++.++++
T Consensus         4 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~D~~d~~~~~~~~~   66 (250)
T 2fwm_X            4 DFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQEQYPFATEVMDVADAAQVAQVCQ   66 (250)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCSSCCSSEEEECCTTCHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhhhcCCceEEEcCCCCHHHHHHHHH
Confidence            478999999995 89999999999999999998888653211 1   1166677777776665

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=93.84  E-value=0.066  Score=43.47  Aligned_cols=39  Identities=23%  Similarity=0.260  Sum_probs=30.3

Q ss_pred             ccccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           78 TTKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ...+.+|++.|.|. |.||+++|+.|..-|++|+..+|+.
T Consensus        19 ~~m~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   58 (279)
T 3sju_A           19 SHMSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDA   58 (279)
T ss_dssp             ------CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            34578999999995 7899999999999999999988864

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=93.84  E-value=0.073  Score=43.40  Aligned_cols=56  Identities=18%  Similarity=0.125  Sum_probs=34.0

Q ss_pred             CCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHc
Q 045521           83 GRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLE  138 (204)
Q Consensus        83 g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~  138 (204)
                      +++|.|.|. |.||+.+++.|..-|.+|+..+|+......+.+.+-|.+++.++++.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~Dl~d~~~~~~~~~~   58 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPKFEQVNLLDSNAVHHIIHD   58 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC------------------CHHHHHH
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCCCCeEEecCCCHHHHHHHHHh
Confidence            689999996 99999999999999999999987643211222667777777777764

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=93.84  E-value=0.094  Score=43.34  Aligned_cols=61  Identities=15%  Similarity=0.065  Sum_probs=45.3

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcC--CEEEEEcCCCCCCC-----------C---CCcceeCHHHHHHHHHcCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFG--CFISYRSRAEKPNT-----------K---YKGALVDESELVSALLEDR  140 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg--~~V~~~~r~~~~~~-----------~---~~G~lvd~~aL~~aL~~g~  140 (204)
                      .+.+++|.|.|. |.||+.+++.|..-|  .+|++.++......           .   +.|.+-|.+++.++++..+
T Consensus        21 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~   98 (346)
T 4egb_A           21 QSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERD   98 (346)
T ss_dssp             ---CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHT
T ss_pred             ccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhcC
Confidence            467899999997 999999999998888  78888877542110           1   1188889999999988743

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=93.79  E-value=0.09  Score=43.68  Aligned_cols=38  Identities=13%  Similarity=0.026  Sum_probs=34.0

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..+.+++|.|.|. |.||+.+++.|..-|.+|++.+|..
T Consensus        23 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   61 (352)
T 1sb8_A           23 LPAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFA   61 (352)
T ss_dssp             HHHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             cCccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            3578899999997 9999999999999999999988864

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=93.79  E-value=0.077  Score=44.13  Aligned_cols=34  Identities=21%  Similarity=0.258  Sum_probs=28.7

Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      ...++|+|||.|.+|..+|..|..-|.+|..+ ++
T Consensus        17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~   50 (318)
T 3hwr_A           17 FQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-AR   50 (318)
T ss_dssp             ---CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CC
T ss_pred             ccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-Ec
Confidence            45689999999999999999999889999888 54

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=93.78  E-value=0.082  Score=42.65  Aligned_cols=37  Identities=24%  Similarity=0.376  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+.||++.|.| -|.||+++|+.|..-|++|+..+|+.
T Consensus        18 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   55 (273)
T 1ae1_A           18 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE   55 (273)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            58899999999 48999999999999999999988864

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=93.77  E-value=0.13  Score=41.32  Aligned_cols=37  Identities=24%  Similarity=0.334  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++.||++.|.|. |.||+++|+.|..-|++|+..+|+.
T Consensus         3 ~l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~   40 (263)
T 2a4k_A            3 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREE   40 (263)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            478999999995 8999999999999999999988864

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=93.76  E-value=0.063  Score=44.88  Aligned_cols=35  Identities=37%  Similarity=0.399  Sum_probs=32.5

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~  116 (204)
                      .|++|.|+|.|.||+.++++++.+|+ +|++.+++.
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~  199 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNP  199 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            79999999999999999999999999 899988754

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=93.74  E-value=0.12  Score=42.08  Aligned_cols=51  Identities=20%  Similarity=0.208  Sum_probs=42.2

Q ss_pred             CCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHc
Q 045521           82 SGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLE  138 (204)
Q Consensus        82 ~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~  138 (204)
                      .+++|.|.| .|.||+.+++.|..-|.+|++.+|+..      +.+-|.+++.+++++
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~~------~D~~d~~~~~~~~~~   53 (321)
T 1e6u_A            2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDE------LNLLDSRAVHDFFAS   53 (321)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTT------CCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCcc------CCccCHHHHHHHHHh
Confidence            468999999 599999999999999999988877532      566788888888874

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=93.74  E-value=0.085  Score=44.18  Aligned_cols=36  Identities=28%  Similarity=0.338  Sum_probs=32.6

Q ss_pred             CCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           82 SGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        82 ~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .|++|.|+|. |.||+.+++.++..|++|+..+++..
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~  205 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEG  205 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHH
Confidence            5899999999 89999999999999999998887643

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=93.73  E-value=0.054  Score=45.98  Aligned_cols=30  Identities=27%  Similarity=0.181  Sum_probs=24.8

Q ss_pred             CEEEEEeCChHHHHHHHHHhhc-CCEEEEEc
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAF-GCFISYRS  113 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~f-g~~V~~~~  113 (204)
                      .+|||+|+|+||+.+++.+... +++|.++.
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV~   33 (343)
T 2yyy_A            3 AKVLINGYGSIGKRVADAVSMQDDMEVIGVT   33 (343)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSSEEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCceEEEEe
Confidence            4899999999999999998765 58876553

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=93.71  E-value=0.085  Score=41.26  Aligned_cols=37  Identities=24%  Similarity=0.312  Sum_probs=33.3

Q ss_pred             cCCCEEEEEe-CChHHHHHHHHHhhcCC--EEEEEcCCCC
Q 045521           81 ISGRSVGIIG-LGRIGMAVAKRAEAFGC--FISYRSRAEK  117 (204)
Q Consensus        81 l~g~tvGIvG-~G~IG~~va~~~~~fg~--~V~~~~r~~~  117 (204)
                      +.+|++.|.| .|.||+++++.|..-|.  +|+..+|+..
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~   55 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKL   55 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCC
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCC
Confidence            6789999999 69999999999999999  9999888754

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=93.70  E-value=0.05  Score=43.38  Aligned_cols=37  Identities=19%  Similarity=0.341  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++.||++.|.|. |.||+++++.|..-|++|+..+|+.
T Consensus         3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~   40 (253)
T 1hxh_A            3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINE   40 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            578999999985 8999999999999999999988864

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=93.70  E-value=0.16  Score=41.21  Aligned_cols=38  Identities=21%  Similarity=0.192  Sum_probs=33.4

Q ss_pred             ccccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           78 TTKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        78 ~~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      ...+.||++.|.|. |.||+++|+.|..-|++|+..+++
T Consensus        24 m~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~   62 (280)
T 4da9_A           24 MTQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIG   62 (280)
T ss_dssp             CSCCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             hhccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            45689999999995 789999999999999999888754

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=93.69  E-value=0.078  Score=44.32  Aligned_cols=69  Identities=17%  Similarity=0.200  Sum_probs=46.9

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhc--CCEEEEEcCCCCCCC---CCC-cceeCH---HHHHHHHHcCCceEEEeeCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAF--GCFISYRSRAEKPNT---KYK-GALVDE---SELVSALLEDRLAAAVLDVFE  150 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~f--g~~V~~~~r~~~~~~---~~~-G~lvd~---~aL~~aL~~g~i~ga~lDV~~  150 (204)
                      .|++|.|+|.|.||+..+++++.+  |++|++.+++.....   .+. -.++|.   ++..+.+.+|+-.-+.+|...
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~g~g~D~vid~~g  247 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLTDGLGASIAIDLVG  247 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHHTTCCEEEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHhhcCCCccEEEECCC
Confidence            789999999999999999999999  999999887643210   010 234553   345566665532335566543

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=93.67  E-value=0.072  Score=45.57  Aligned_cols=35  Identities=26%  Similarity=0.384  Sum_probs=32.2

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~  116 (204)
                      .|++|.|+|.|.||...+++++.+|+ +|++.+++.
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~  220 (398)
T 2dph_A          185 PGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNP  220 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCH
Confidence            58999999999999999999999999 899888754

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=93.67  E-value=0.094  Score=42.22  Aligned_cols=38  Identities=21%  Similarity=0.288  Sum_probs=33.0

Q ss_pred             ccccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           78 TTKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        78 ~~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      ..+|.||++.|.|. |.||+++|+.|..-|++|+..++.
T Consensus        13 ~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~   51 (270)
T 3is3_A           13 PGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYAN   51 (270)
T ss_dssp             TTCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence            45699999999995 689999999999999999886553

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=93.66  E-value=0.079  Score=42.61  Aligned_cols=58  Identities=17%  Similarity=0.164  Sum_probs=43.3

Q ss_pred             ccCCCEEEEEe---CChHHHHHHHHHhhcCCEEEEEcCCCCCC-------C--C---CCcceeCHHHHHHHHH
Q 045521           80 KISGRSVGIIG---LGRIGMAVAKRAEAFGCFISYRSRAEKPN-------T--K---YKGALVDESELVSALL  137 (204)
Q Consensus        80 ~l~g~tvGIvG---~G~IG~~va~~~~~fg~~V~~~~r~~~~~-------~--~---~~G~lvd~~aL~~aL~  137 (204)
                      .+.||++.|.|   -|.||+++|+.|..-|++|+..+|+....       .  .   +.+.+-|++++.++++
T Consensus         4 ~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~   76 (269)
T 2h7i_A            4 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAG   76 (269)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHH
T ss_pred             ccCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHhcCCCceEEEccCCCHHHHHHHHH
Confidence            57899999999   59999999999999999999888765220       0  1   1156667776655554

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=93.66  E-value=0.063  Score=43.35  Aligned_cols=37  Identities=27%  Similarity=0.338  Sum_probs=32.0

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRA  115 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~  115 (204)
                      ..|++++|.|+|+|.+|..+++.|...|. ++..+|+.
T Consensus        24 ~~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d   61 (251)
T 1zud_1           24 QKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDD   61 (251)
T ss_dssp             HHHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred             HHHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            46899999999999999999999999998 56666653

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=93.65  E-value=0.23  Score=40.01  Aligned_cols=58  Identities=17%  Similarity=0.153  Sum_probs=43.2

Q ss_pred             cCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCCCC--------CcceeCHHHHHHHHHc
Q 045521           81 ISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNTKY--------KGALVDESELVSALLE  138 (204)
Q Consensus        81 l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~--------~G~lvd~~aL~~aL~~  138 (204)
                      ++||++.|-|- +.||+++|+.|..-|++|+..+|+.......        ...+-|++++.+.+++
T Consensus         9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~   75 (242)
T 4b79_A            9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAPRHPRIRREELDITDSQRLQRLFEA   75 (242)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTSCCCTTEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhhhhcCCeEEEEecCCCHHHHHHHHHh
Confidence            58999999995 6799999999999999999988865432111        1555666666555543

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=93.65  E-value=0.091  Score=43.70  Aligned_cols=34  Identities=26%  Similarity=0.263  Sum_probs=30.3

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE  116 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~  116 (204)
                      .++|+|||.|.+|..+|..+..-|. +|..+|+..
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            4689999999999999999987787 899999865

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=93.64  E-value=0.08  Score=46.86  Aligned_cols=34  Identities=18%  Similarity=0.271  Sum_probs=31.5

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..+|+|||+|.+|..+|..|...|.+|++++++.
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~   41 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ   41 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4699999999999999999999999999999864

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=93.62  E-value=0.11  Score=42.29  Aligned_cols=38  Identities=21%  Similarity=0.274  Sum_probs=33.1

Q ss_pred             ccccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           78 TTKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        78 ~~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      ..++.+|++.|.|. |.||+++|+.|..-|++|+..+|.
T Consensus        20 ~~~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~   58 (281)
T 3v2h_A           20 FQSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFG   58 (281)
T ss_dssp             --CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCC
T ss_pred             hhccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            34689999999994 799999999999999999998884

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=93.62  E-value=0.081  Score=46.93  Aligned_cols=35  Identities=20%  Similarity=0.287  Sum_probs=32.1

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhc-CC-EEEEEcCCCC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAF-GC-FISYRSRAEK  117 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~f-g~-~V~~~~r~~~  117 (204)
                      -++|+|||+|.+|..+|..+... |. +|+++|+...
T Consensus        18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            36899999999999999999988 99 9999998865

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=93.60  E-value=0.11  Score=40.78  Aligned_cols=58  Identities=22%  Similarity=0.103  Sum_probs=43.1

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCC-------CC---CCcceeCHHHHHHHHH
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPN-------TK---YKGALVDESELVSALL  137 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~-------~~---~~G~lvd~~aL~~aL~  137 (204)
                      .+.+|++.|.|. |.||+++++.|..-|++|+..+|+....       ..   +.+.+-|++++.++++
T Consensus         4 ~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   72 (244)
T 1cyd_A            4 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALG   72 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHT
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCCcEEecCCCHHHHHHHHH
Confidence            578999999996 8999999999999999999988864210       00   1145556666666665

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=93.60  E-value=0.13  Score=41.69  Aligned_cols=39  Identities=21%  Similarity=0.247  Sum_probs=34.6

Q ss_pred             ccccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           78 TTKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..++.||++.|.|. |.||+++|+.|..-|++|+..+|+.
T Consensus        22 ~~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~   61 (277)
T 4dqx_A           22 SMDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNE   61 (277)
T ss_dssp             CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             cCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            45689999999994 7999999999999999999988864

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=93.60  E-value=0.12  Score=40.54  Aligned_cols=37  Identities=24%  Similarity=0.374  Sum_probs=31.8

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEE-cCCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYR-SRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~-~r~~  116 (204)
                      +++||++.|.| .|.||+++++.|..-|++|+.. +|..
T Consensus         2 ~l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~   40 (247)
T 2hq1_A            2 QLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPAS   40 (247)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTC
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCH
Confidence            36899999998 5899999999999999999887 5543

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=93.59  E-value=0.069  Score=45.33  Aligned_cols=36  Identities=39%  Similarity=0.531  Sum_probs=32.5

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAEK  117 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~~  117 (204)
                      .|.+|.|+|.|.||...+++++.+|+ +|+..+++..
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~  229 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSK  229 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH
Confidence            58999999999999999999999999 7998886653

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=93.59  E-value=0.099  Score=45.14  Aligned_cols=33  Identities=30%  Similarity=0.316  Sum_probs=29.1

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcC---CEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFG---CFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg---~~V~~~~r~~  116 (204)
                      ++|+|+|.|.||+.+++.|...|   .+|...+|+.
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~   37 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTL   37 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCH
Confidence            58999999999999999998877   4898888864

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=93.59  E-value=0.1  Score=42.13  Aligned_cols=60  Identities=20%  Similarity=0.155  Sum_probs=42.7

Q ss_pred             ccccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCC-----C---CCcceeCHHHHHHHHH
Q 045521           78 TTKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNT-----K---YKGALVDESELVSALL  137 (204)
Q Consensus        78 ~~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~-----~---~~G~lvd~~aL~~aL~  137 (204)
                      ...+.+|++.|.|. |.||+++|+.|..-|++|+..+|+.....     .   +.+.+-|++++.++++
T Consensus        11 ~~~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~   79 (266)
T 3p19_A           11 GRGSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALNLPNTLCAQVDVTDKYTFDTAIT   79 (266)
T ss_dssp             ----CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHTTCCTTEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHhhcCCceEEEecCCCHHHHHHHHH
Confidence            45688999999995 89999999999999999999888642110     0   1166777777766655

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=93.58  E-value=0.08  Score=43.97  Aligned_cols=35  Identities=23%  Similarity=0.394  Sum_probs=31.9

Q ss_pred             CCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|++|.|.|. |.||+.+++.++..|++|+..+++.
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~  180 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSD  180 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence            5899999998 9999999999999999999887653

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=93.57  E-value=0.053  Score=43.88  Aligned_cols=36  Identities=25%  Similarity=0.387  Sum_probs=32.3

Q ss_pred             cCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           81 ISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        81 l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +.+|++.|.|. |.||+++|+.|..-|++|+..+|+.
T Consensus         2 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   38 (264)
T 3tfo_A            2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQ   38 (264)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            57899999995 7899999999999999999988864

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=93.55  E-value=0.11  Score=42.00  Aligned_cols=37  Identities=24%  Similarity=0.361  Sum_probs=33.3

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      .++.||++.|.|. |.||+++|+.|..-|++|+..+|.
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~   64 (273)
T 3uf0_A           27 FSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT   64 (273)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCH
Confidence            4689999999995 799999999999999999888865

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=93.55  E-value=0.071  Score=42.14  Aligned_cols=36  Identities=19%  Similarity=0.150  Sum_probs=31.1

Q ss_pred             cCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           81 ISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        81 l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +++|++.|.|. |.||+++|+.|..-|++|+..+|+.
T Consensus         1 Ms~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~   37 (235)
T 3l6e_A            1 MSLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRY   37 (235)
T ss_dssp             --CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            35799999995 7999999999999999999998864

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=93.55  E-value=0.11  Score=40.86  Aligned_cols=58  Identities=24%  Similarity=0.143  Sum_probs=42.7

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCC-------C---CCcceeCHHHHHHHHH
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNT-------K---YKGALVDESELVSALL  137 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~-------~---~~G~lvd~~aL~~aL~  137 (204)
                      .+.||++.|.|. |.||+++++.|..-|.+|+..+|+.....       .   +.+.+-|++++.++++
T Consensus         4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   72 (244)
T 3d3w_A            4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALG   72 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHT
T ss_pred             ccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCCEEEEeCCCHHHHHHHHH
Confidence            578999999996 89999999999999999998887642100       0   1145556666666655

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=93.54  E-value=0.13  Score=40.90  Aligned_cols=39  Identities=18%  Similarity=0.336  Sum_probs=34.6

Q ss_pred             ccccCCCEEEEEeC---ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           78 TTKISGRSVGIIGL---GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG~---G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ...+.+|++.|.|.   |.||+++|+.|..-|++|+..+|..
T Consensus         9 ~~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~   50 (271)
T 3ek2_A            9 MGFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGD   50 (271)
T ss_dssp             CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             ccccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecch
Confidence            45789999999996   5899999999999999999888764

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=93.54  E-value=0.17  Score=39.37  Aligned_cols=54  Identities=20%  Similarity=0.230  Sum_probs=43.1

Q ss_pred             CCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCCC---CCcceeCHHHHHHHHH
Q 045521           83 GRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNTK---YKGALVDESELVSALL  137 (204)
Q Consensus        83 g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~---~~G~lvd~~aL~~aL~  137 (204)
                      +|++.|.| .|.||+++++.|..-|++|+..+|+.. ...   +.+.+-|++++.++++
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~-~~~~~~~~~D~~~~~~~~~~~~   59 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE-GEDLIYVEGDVTREEDVRRAVA   59 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC-SSSSEEEECCTTCHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc-ccceEEEeCCCCCHHHHHHHHH
Confidence            68999998 589999999999999999999888764 211   2277778888877765

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=93.50  E-value=0.093  Score=47.00  Aligned_cols=35  Identities=34%  Similarity=0.349  Sum_probs=31.9

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKP  118 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~  118 (204)
                      +++.|+|+|++|+.+|+.|...|.+|...+..+..
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~  383 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESP  383 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHH
Confidence            78999999999999999999999999998876543

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=93.49  E-value=0.11  Score=43.83  Aligned_cols=38  Identities=21%  Similarity=0.305  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcC-CEEEEEcCCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFG-CFISYRSRAEK  117 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg-~~V~~~~r~~~  117 (204)
                      .+.+++|.|.|. |.||+.+++.|..-| .+|+..+|...
T Consensus        29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   68 (377)
T 2q1s_A           29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLS   68 (377)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTT
T ss_pred             HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCC
Confidence            578999999995 999999999999999 99999988643

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=93.49  E-value=0.097  Score=42.51  Aligned_cols=38  Identities=21%  Similarity=0.115  Sum_probs=32.3

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .+.+++|.|.|. |.||+.+++.|..-|.+|+..+|...
T Consensus         4 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            4 NTLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             ccCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            456899999997 99999999999999999999988654

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=93.48  E-value=0.1  Score=42.59  Aligned_cols=63  Identities=16%  Similarity=0.161  Sum_probs=46.9

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEc-CCCCCCCCCCcceeCHHHHHHHHH---cCCceEEEeeCCCCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRS-RAEKPNTKYKGALVDESELVSALL---EDRLAAAVLDVFEHE  152 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~-r~~~~~~~~~G~lvd~~aL~~aL~---~g~i~ga~lDV~~~E  152 (204)
                      .+.||++.|.| -|.||+++|+.|..-|++|+..+ |+...          .+.+.+.|+   .+++.....|+.+.+
T Consensus         6 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~----------~~~~~~~l~~~~~~~~~~~~~Dl~~~~   73 (291)
T 1e7w_A            6 APTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAE----------ANALSATLNARRPNSAITVQADLSNVA   73 (291)
T ss_dssp             --CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH----------HHHHHHHHHHHSTTCEEEEECCCSSSC
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHH----------HHHHHHHHhhhcCCeeEEEEeecCCcc
Confidence            57899999998 58999999999999999999888 65311          134445554   346777889998766

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=93.48  E-value=0.069  Score=44.42  Aligned_cols=35  Identities=26%  Similarity=0.389  Sum_probs=32.2

Q ss_pred             CCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|++|.|.|. |.||+.++++++.+|++|+..+++.
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~  184 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGA  184 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            5899999998 9999999999999999999888754

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=93.47  E-value=0.093  Score=44.77  Aligned_cols=35  Identities=26%  Similarity=0.433  Sum_probs=31.4

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~  116 (204)
                      .|++|.|+|.|.||...+++++.+|+ +|++.+++.
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~  220 (398)
T 1kol_A          185 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP  220 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCH
Confidence            58999999999999999999999999 688877654

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=93.47  E-value=0.098  Score=45.94  Aligned_cols=35  Identities=17%  Similarity=0.364  Sum_probs=32.1

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKP  118 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~  118 (204)
                      -+++|||+|.+|..+|..+...|.+|++|++++..
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~k   43 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARK   43 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTT
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            58999999999999999999999999999997653

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=93.47  E-value=0.12  Score=41.76  Aligned_cols=37  Identities=16%  Similarity=0.275  Sum_probs=33.0

Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      ..+++|.|||-|.||-++|..+..+|.+|..+.|...
T Consensus       150 ~~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~  186 (314)
T 4a5l_A          150 FRNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDA  186 (314)
T ss_dssp             GTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             cCCCeEEEECCChHHHHHHHHHHHhCCeeeeeccccc
Confidence            4689999999999999999999999999988876543

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=93.43  E-value=0.05  Score=47.39  Aligned_cols=37  Identities=27%  Similarity=0.283  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++.+|+|.|||.|.+|...|+.|+..|.+|.++|...
T Consensus         2 ~~~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~   38 (439)
T 2x5o_A            2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM   38 (439)
T ss_dssp             CCTTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSS
T ss_pred             CCCCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCC
Confidence            3678999999999999999999999999999888654

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=93.42  E-value=0.063  Score=44.97  Aligned_cols=35  Identities=26%  Similarity=0.396  Sum_probs=32.3

Q ss_pred             CCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|++|.|+|. |.||+..+++++.+|++|+..+++.
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~  194 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRT  194 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            5899999998 9999999999999999999888754

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=93.42  E-value=0.16  Score=38.56  Aligned_cols=52  Identities=17%  Similarity=0.199  Sum_probs=41.7

Q ss_pred             CC-EEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHc
Q 045521           83 GR-SVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLE  138 (204)
Q Consensus        83 g~-tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~  138 (204)
                      +| ++.|.| .|.||+++++.|. -|++|+..+|+..   .+.+.+-|++++.++++.
T Consensus         2 ~kM~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~---~~~~D~~~~~~~~~~~~~   55 (202)
T 3d7l_A            2 NAMKILLIGASGTLGSAVKERLE-KKAEVITAGRHSG---DVTVDITNIDSIKKMYEQ   55 (202)
T ss_dssp             CSCEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS---SEECCTTCHHHHHHHHHH
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc---ceeeecCCHHHHHHHHHH
Confidence            45 899998 5899999999999 9999999888653   223677788888777765

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=93.41  E-value=0.055  Score=47.81  Aligned_cols=40  Identities=18%  Similarity=0.241  Sum_probs=30.9

Q ss_pred             cccccCCCEEEEEeCChHHHHHHHHHhhc-CCEEEEEcCCC
Q 045521           77 LTTKISGRSVGIIGLGRIGMAVAKRAEAF-GCFISYRSRAE  116 (204)
Q Consensus        77 ~~~~l~g~tvGIvG~G~IG~~va~~~~~f-g~~V~~~~r~~  116 (204)
                      ....+.+++|+|+|.|.+|+.+++.|... |.+|..++|+.
T Consensus        17 ~~~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~   57 (467)
T 2axq_A           17 IEGRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTL   57 (467)
T ss_dssp             ------CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSH
T ss_pred             cccCCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCH
Confidence            34578899999999999999999999876 78999888864

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=93.40  E-value=0.056  Score=44.93  Aligned_cols=38  Identities=16%  Similarity=0.381  Sum_probs=34.1

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .++.||++.|.|. |.||+++|+.|..-|++|+..+|+.
T Consensus         4 ~~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~   42 (319)
T 3ioy_A            4 KDFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQ   42 (319)
T ss_dssp             CCCTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3578999999995 8999999999999999999988864

>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A*

Probab=93.40  E-value=0.067  Score=45.32  Aligned_cols=30  Identities=27%  Similarity=0.233  Sum_probs=24.5

Q ss_pred             EEEEEeCChHHHHHHHHHhhc----CCEEEEEcC
Q 045521           85 SVGIIGLGRIGMAVAKRAEAF----GCFISYRSR  114 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~f----g~~V~~~~r  114 (204)
                      +|||.|||+|||.+.+.+..-    .++|.+.+.
T Consensus         3 kVaInGfGrIGr~v~r~l~~~~~~~~~evvaInd   36 (335)
T 1obf_O            3 RVAINGYGRIGRNILRAHYEGGKSHDIEIVAIND   36 (335)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCCcEEEEEeC
Confidence            799999999999999988654    678765543

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=93.39  E-value=0.29  Score=39.34  Aligned_cols=38  Identities=16%  Similarity=0.085  Sum_probs=33.9

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..+.||++.|.|. |.||+++|+.|..-|++|+..+|..
T Consensus         6 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~   44 (287)
T 3pxx_A            6 GRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICH   44 (287)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccc
Confidence            4689999999995 7899999999999999999888763

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=93.38  E-value=0.068  Score=43.25  Aligned_cols=39  Identities=18%  Similarity=0.219  Sum_probs=34.5

Q ss_pred             ccccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           78 TTKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ...+.||++.|.|. |.||+++|+.|..-|++|+..+|..
T Consensus        23 ~~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   62 (270)
T 3ftp_A           23 DKTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTE   62 (270)
T ss_dssp             CCTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             ccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            45689999999985 7899999999999999999988864

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=93.37  E-value=0.12  Score=41.25  Aligned_cols=38  Identities=24%  Similarity=0.341  Sum_probs=33.7

Q ss_pred             cccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..+.+|++.|.| -|.||+++++.|..-|++|+..+|..
T Consensus        12 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~   50 (278)
T 2bgk_A           12 NRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIAD   50 (278)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCh
Confidence            458999999999 58999999999999999999888764

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=93.36  E-value=0.11  Score=44.61  Aligned_cols=36  Identities=28%  Similarity=0.362  Sum_probs=32.4

Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE  116 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~  116 (204)
                      -.|.+|.|+|.|.||...+++++.+|+ +|++.+++.
T Consensus       212 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~  248 (404)
T 3ip1_A          212 RPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSE  248 (404)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            368999999999999999999999999 899887654

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=93.35  E-value=0.074  Score=44.41  Aligned_cols=36  Identities=17%  Similarity=0.175  Sum_probs=32.6

Q ss_pred             CCCEEEEEeCC-hHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           82 SGRSVGIIGLG-RIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        82 ~g~tvGIvG~G-~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .|++|.|+|.| .||+..+++++.+|++|+..+++..
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~  180 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNK  180 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            58999999998 9999999999999999999887654

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=93.35  E-value=0.15  Score=41.35  Aligned_cols=55  Identities=22%  Similarity=0.187  Sum_probs=41.3

Q ss_pred             CCEEEEEeC-ChHHHHHHHHHhhcC-CEEEEEcCCCCCC-------CC---CCcceeCHHHHHHHHH
Q 045521           83 GRSVGIIGL-GRIGMAVAKRAEAFG-CFISYRSRAEKPN-------TK---YKGALVDESELVSALL  137 (204)
Q Consensus        83 g~tvGIvG~-G~IG~~va~~~~~fg-~~V~~~~r~~~~~-------~~---~~G~lvd~~aL~~aL~  137 (204)
                      .++|.|.|. |.||+.+++.|..-| .+|...+|++...       ..   ..+.+-|.++|.++++
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~   71 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALN   71 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHT
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHh
Confidence            589999997 999999999998888 9999988875431       01   1156666667666665

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=93.35  E-value=0.065  Score=45.40  Aligned_cols=30  Identities=33%  Similarity=0.379  Sum_probs=24.8

Q ss_pred             CEEEEEeCChHHHHHHHHHhhc-CCEEEEEc
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAF-GCFISYRS  113 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~f-g~~V~~~~  113 (204)
                      .+|||+|+|+||+.+++.+..- +++|.+..
T Consensus         4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~   34 (337)
T 3e5r_O            4 IKIGINGFGRIGRLVARVALQSEDVELVAVN   34 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEE
T ss_pred             eEEEEECcCHHHHHHHHHHhCCCCeEEEEEE
Confidence            3899999999999999998754 67776654

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=93.34  E-value=0.083  Score=42.55  Aligned_cols=54  Identities=15%  Similarity=0.165  Sum_probs=39.1

Q ss_pred             CEEEEEe-CChHHHHHHHHHhhc-CCEEEEEcCCCCCCCC--------CCcceeCHHHHHHHHH
Q 045521           84 RSVGIIG-LGRIGMAVAKRAEAF-GCFISYRSRAEKPNTK--------YKGALVDESELVSALL  137 (204)
Q Consensus        84 ~tvGIvG-~G~IG~~va~~~~~f-g~~V~~~~r~~~~~~~--------~~G~lvd~~aL~~aL~  137 (204)
                      ++|.|.| .|.||+.+++.|..- |.+|...+|++.....        ..+.+-|.++|.++++
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~   64 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFK   64 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTT
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHh
Confidence            3689999 599999999999887 9999998887543221        1155556666666654

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=93.34  E-value=0.1  Score=42.29  Aligned_cols=38  Identities=24%  Similarity=0.295  Sum_probs=34.0

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..|.||++.|.|. |.||+++|+.|..-|++|+..+|+.
T Consensus        23 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~   61 (277)
T 4fc7_A           23 DLLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSL   61 (277)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCH
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999995 6899999999999999999988864

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=93.32  E-value=0.074  Score=39.31  Aligned_cols=34  Identities=21%  Similarity=0.200  Sum_probs=30.7

Q ss_pred             CCEEEEEeC----ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           83 GRSVGIIGL----GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        83 g~tvGIvG~----G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      -++|+|||.    |++|..+++.++..|.+|+.+++..
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~   50 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKV   50 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCcc
Confidence            678999999    8999999999999999988888765

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=93.31  E-value=0.16  Score=41.16  Aligned_cols=37  Identities=24%  Similarity=0.344  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++.||++.|.| -|.||+++|+.|..-|++|+..+|+.
T Consensus         2 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   39 (281)
T 3zv4_A            2 KLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSA   39 (281)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCH
Confidence            47899999999 57899999999999999999988864

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=93.31  E-value=0.12  Score=41.81  Aligned_cols=38  Identities=18%  Similarity=0.066  Sum_probs=33.4

Q ss_pred             cccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..+.+|++.|.| .|.||+++++.|..-|++|+..+|+.
T Consensus        40 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~   78 (285)
T 2c07_A           40 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQ   78 (285)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             ccCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCH
Confidence            467899999998 58999999999999999998887753

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=93.28  E-value=0.095  Score=42.68  Aligned_cols=38  Identities=24%  Similarity=0.163  Sum_probs=32.0

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .++.+|++.|.|. |.||+++|+.|..-|++|+..+|+.
T Consensus        24 ~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   62 (283)
T 3v8b_A           24 MNQPSPVALITGAGSGIGRATALALAADGVTVGALGRTR   62 (283)
T ss_dssp             ---CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4688999999995 7899999999999999999888764

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=93.28  E-value=0.22  Score=39.52  Aligned_cols=57  Identities=19%  Similarity=0.186  Sum_probs=42.1

Q ss_pred             cCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCCC--CCcceeCHHHHHHHHH
Q 045521           81 ISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNTK--YKGALVDESELVSALL  137 (204)
Q Consensus        81 l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~~--~~G~lvd~~aL~~aL~  137 (204)
                      -.+|++.|.|. |.||+++|+.|..-|++|+..+|+......  +...+-|.+++.++++
T Consensus        20 ~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~d~~d~~~v~~~~~   79 (251)
T 3orf_A           20 HMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADHSFTIKDSGEEEIKSVIE   79 (251)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTSSEEEECSCSSHHHHHHHHH
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccccccceEEEeCCHHHHHHHHH
Confidence            35899999995 789999999999999999999887654321  1134667777665554

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=93.27  E-value=0.11  Score=43.51  Aligned_cols=77  Identities=25%  Similarity=0.257  Sum_probs=50.7

Q ss_pred             CCEEEEEeCChHHHH-HHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCc--
Q 045521           83 GRSVGIIGLGRIGMA-VAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEEL--  159 (204)
Q Consensus        83 g~tvGIvG~G~IG~~-va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l--  159 (204)
                      .|+|.+||.|.+|.. +|+.|+..|.+|.++|....+.            ..+.|++-.+     +++....  +..+  
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~------------~~~~L~~~gi-----~v~~g~~--~~~l~~   64 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPP------------MSTQLEALGI-----DVYEGFD--AAQLDE   64 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTT------------HHHHHHHTTC-----EEEESCC--GGGGGS
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcH------------HHHHHHhCCC-----EEECCCC--HHHcCC
Confidence            478999999999995 9999999999999999864321            2334444222     2221110  1223  


Q ss_pred             CCCCceEEcccCCCCcHHH
Q 045521          160 FGLENVVLLPHAASGTEET  178 (204)
Q Consensus       160 ~~~~nvilTPH~a~~t~~~  178 (204)
                      .+.+-|++||.+.-...+.
T Consensus        65 ~~~d~vV~Spgi~~~~p~~   83 (326)
T 3eag_A           65 FKADVYVIGNVAKRGMDVV   83 (326)
T ss_dssp             CCCSEEEECTTCCTTCHHH
T ss_pred             CCCCEEEECCCcCCCCHHH
Confidence            2467788899887666553

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=93.27  E-value=0.19  Score=40.67  Aligned_cols=56  Identities=27%  Similarity=0.337  Sum_probs=43.2

Q ss_pred             CCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCC--------------CC---CCcceeCHHHHHHHHHc
Q 045521           83 GRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPN--------------TK---YKGALVDESELVSALLE  138 (204)
Q Consensus        83 g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~--------------~~---~~G~lvd~~aL~~aL~~  138 (204)
                      .++|.|.|. |.||+.+++.|..-|.+|...+|.....              ..   ..+.+-|.++|.++++.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~   77 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKN   77 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcC
Confidence            578999995 9999999999999999999988864311              11   12677788888888774

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=93.25  E-value=0.094  Score=44.20  Aligned_cols=35  Identities=20%  Similarity=0.319  Sum_probs=32.3

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhc-CCEEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAF-GCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~f-g~~V~~~~r~~  116 (204)
                      .|.+|.|+|.|.||...+++++.+ |++|++.+++.
T Consensus       186 ~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~  221 (359)
T 1h2b_A          186 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE  221 (359)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence            588999999999999999999999 99999988754

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=93.24  E-value=0.15  Score=41.31  Aligned_cols=63  Identities=22%  Similarity=0.273  Sum_probs=42.8

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHc---CCceEEEeeCCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLE---DRLAAAVLDVFEH  151 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~---g~i~ga~lDV~~~  151 (204)
                      ..+++|++.|.|. |.||+++|+.|..-|++|+..+|+...          .+.+.+.|++   .++....+|+.+.
T Consensus         8 ~~~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~----------~~~~~~~l~~~~~~~~~~~~~Dl~~~   74 (311)
T 3o26_A            8 TVTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTK----------GHEAVEKLKNSNHENVVFHQLDVTDP   74 (311)
T ss_dssp             ----CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHH----------HHHHHHHHHTTTCCSEEEEECCTTSC
T ss_pred             ccCCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHH----------HHHHHHHHHhcCCCceEEEEccCCCc
Confidence            3578999999995 899999999999999999999886421          1223333332   2455566777654

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=93.24  E-value=0.14  Score=42.24  Aligned_cols=58  Identities=17%  Similarity=0.171  Sum_probs=42.3

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcC-------CEEEEEcCCCCCCCC--------CCcceeCHHHHHHHHH
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFG-------CFISYRSRAEKPNTK--------YKGALVDESELVSALL  137 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg-------~~V~~~~r~~~~~~~--------~~G~lvd~~aL~~aL~  137 (204)
                      .+.+++|.|.| .|.||+.+++.|..-|       .+|+..+|.......        +.+.+-|.+++.++++
T Consensus        11 ~~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~   84 (342)
T 2hrz_A           11 YFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGFSGAVDARAADLSAPGEAEKLVE   84 (342)
T ss_dssp             CCSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCTTCCSEEEEEECCTTSTTHHHHHHH
T ss_pred             CccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCccccccCCceeEEEcCCCCHHHHHHHHh
Confidence            47899999999 6999999999999889       799988876532111        1155556666665554

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=93.24  E-value=0.13  Score=40.99  Aligned_cols=39  Identities=26%  Similarity=0.268  Sum_probs=33.8

Q ss_pred             ccccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           78 TTKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..++.||++.|.|. |.||+++|+.|..-|++|+..+|+.
T Consensus        14 ~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~   53 (249)
T 1o5i_A           14 ELGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE   53 (249)
T ss_dssp             --CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             HhccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            45799999999995 8999999999999999999988863

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=93.24  E-value=0.055  Score=43.20  Aligned_cols=37  Identities=19%  Similarity=0.219  Sum_probs=32.8

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhh---cCCEEEEEcCCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEA---FGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~---fg~~V~~~~r~~  116 (204)
                      +|.||++.|.| -|.||+++|+.|..   -|++|+..+|+.
T Consensus         3 ~l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~   43 (259)
T 1oaa_A            3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSE   43 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCH
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCH
Confidence            57899999998 58999999999988   899999988864

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=93.23  E-value=0.26  Score=37.84  Aligned_cols=33  Identities=24%  Similarity=0.352  Sum_probs=29.7

Q ss_pred             CEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|.|.|. |.||+.+++.|..-|.+|...+|+.
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDP   34 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            36899996 9999999999999999999998874

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=93.23  E-value=0.25  Score=39.22  Aligned_cols=40  Identities=15%  Similarity=0.121  Sum_probs=32.7

Q ss_pred             ccccCCCEEEEEe-CChHHHHHHHHHhhcC---CEEEEEcCCCC
Q 045521           78 TTKISGRSVGIIG-LGRIGMAVAKRAEAFG---CFISYRSRAEK  117 (204)
Q Consensus        78 ~~~l~g~tvGIvG-~G~IG~~va~~~~~fg---~~V~~~~r~~~  117 (204)
                      ...+.+|++.|.| .|.||+++|+.|...|   ++|+..+|+..
T Consensus        16 ~~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~   59 (267)
T 1sny_A           16 PRGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNRE   59 (267)
T ss_dssp             ----CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTT
T ss_pred             ccCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChh
Confidence            4578999999998 5899999999999999   99999888653

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=93.22  E-value=0.11  Score=41.65  Aligned_cols=38  Identities=24%  Similarity=0.369  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      ++.+|++.|.| .|.||+++++.|..-|++|+..+|+..
T Consensus        31 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~   69 (279)
T 3ctm_A           31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHP   69 (279)
T ss_dssp             CCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            58899999998 579999999999999999998888653

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=93.20  E-value=0.081  Score=44.12  Aligned_cols=35  Identities=23%  Similarity=0.509  Sum_probs=31.9

Q ss_pred             CCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|++|.|.|. |.||+.+++.++.+|++|+..+++.
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~  190 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSK  190 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            5899999997 9999999999999999999887753

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=93.20  E-value=0.096  Score=44.26  Aligned_cols=35  Identities=23%  Similarity=0.281  Sum_probs=31.4

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~  116 (204)
                      .|++|.|+|.|.||+..+++++.+|+ +|++.+++.
T Consensus       190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~  225 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE  225 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCH
Confidence            58999999999999999999999999 688887654

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=93.16  E-value=0.089  Score=42.01  Aligned_cols=36  Identities=22%  Similarity=0.362  Sum_probs=32.4

Q ss_pred             cCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           81 ISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        81 l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +.||++.|.| -|.||+++|+.|..-|++|+..+|+.
T Consensus         2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   38 (260)
T 1x1t_A            2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            6789999998 57999999999999999999988865

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=93.16  E-value=0.17  Score=40.55  Aligned_cols=38  Identities=13%  Similarity=0.119  Sum_probs=33.5

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .++.||++.|.|. |.||+++|+.|..-|++|+..+|..
T Consensus         7 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~   45 (262)
T 3ksu_A            7 HDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQA   45 (262)
T ss_dssp             SCCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCG
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCc
Confidence            4689999999995 8999999999999999998877653

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=93.15  E-value=0.12  Score=43.71  Aligned_cols=35  Identities=29%  Similarity=0.471  Sum_probs=31.7

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~  116 (204)
                      .|++|.|+|.|.||+..+++++.+|+ +|+..+++.
T Consensus       182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~  217 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQA  217 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            58999999999999999999999999 888887654

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=93.13  E-value=0.15  Score=42.75  Aligned_cols=55  Identities=18%  Similarity=0.065  Sum_probs=41.7

Q ss_pred             CEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCC-----C------------CC---CcceeCHHHHHHHHHc
Q 045521           84 RSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPN-----T------------KY---KGALVDESELVSALLE  138 (204)
Q Consensus        84 ~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~-----~------------~~---~G~lvd~~aL~~aL~~  138 (204)
                      ++|.|.|. |.||+.+++.|..-|.+|++.+|.....     .            ..   .+.+-|.+++.++++.
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~  104 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDV  104 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHH
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHh
Confidence            68999996 9999999999999999999988765321     0            11   1566677777777764

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=93.13  E-value=0.12  Score=43.06  Aligned_cols=63  Identities=16%  Similarity=0.161  Sum_probs=47.0

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEc-CCCCCCCCCCcceeCHHHHHHHHH---cCCceEEEeeCCCCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRS-RAEKPNTKYKGALVDESELVSALL---EDRLAAAVLDVFEHE  152 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~-r~~~~~~~~~G~lvd~~aL~~aL~---~g~i~ga~lDV~~~E  152 (204)
                      .+.||++.|.| .|.||+++|+.|..-|++|+..+ |+...          .+++.+.|+   .+++.....|+.+.+
T Consensus        43 ~l~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~----------~~~~~~~l~~~~~~~~~~~~~Dl~d~~  110 (328)
T 2qhx_A           43 APTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAE----------ANALSATLNARRPNSAITVQADLSNVA  110 (328)
T ss_dssp             --CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH----------HHHHHHHHHHHSTTCEEEEECCCSSSC
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHH----------HHHHHHHHHhhcCCeEEEEEeeCCCch
Confidence            37899999998 58999999999999999999887 65311          234445554   346777889998776

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=93.10  E-value=0.16  Score=41.01  Aligned_cols=37  Identities=24%  Similarity=0.324  Sum_probs=32.4

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      ..+.||++.|.|. |.||+++|+.|..-|++|+..++.
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~   64 (271)
T 3v2g_A           27 ISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVN   64 (271)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3689999999995 789999999999999999887554

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=93.09  E-value=0.12  Score=41.40  Aligned_cols=48  Identities=17%  Similarity=0.122  Sum_probs=40.9

Q ss_pred             CEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHc
Q 045521           84 RSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLE  138 (204)
Q Consensus        84 ~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~  138 (204)
                      ++|.|.| .|.||+.+++.|..-|.+|++.+|..       +.+-|.+++.+++++
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~-------~D~~d~~~~~~~~~~   54 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNPEEYDIYPFDKKL-------LDITNISQVQQVVQE   54 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCTTTEEEEEECTTT-------SCTTCHHHHHHHHHH
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCEEEEecccc-------cCCCCHHHHHHHHHh
Confidence            3899999 59999999999998899999999854       566778888888775

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=93.06  E-value=0.17  Score=40.43  Aligned_cols=36  Identities=22%  Similarity=0.311  Sum_probs=32.5

Q ss_pred             ccCCCEEEEEeC-----------------ChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           80 KISGRSVGIIGL-----------------GRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        80 ~l~g~tvGIvG~-----------------G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      +|.||++.|-|-                 |.||.++|+.+...|++|+.+++.
T Consensus         5 ~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~   57 (226)
T 1u7z_A            5 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGP   57 (226)
T ss_dssp             TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECS
T ss_pred             CCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECC
Confidence            589999999998                 799999999999999999887654

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=93.04  E-value=0.099  Score=42.34  Aligned_cols=34  Identities=21%  Similarity=0.155  Sum_probs=30.4

Q ss_pred             CCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           83 GRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        83 g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +++|.|.|. |.||+.+++.|..-|.+|...+|..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   36 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKT   36 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCS
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCC
Confidence            578999995 9999999999988899999888865

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A

Probab=93.02  E-value=0.081  Score=45.55  Aligned_cols=29  Identities=24%  Similarity=0.145  Sum_probs=24.0

Q ss_pred             CEEEEEeCChHHHHHHHHHhhc---CCEEEEE
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAF---GCFISYR  112 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~f---g~~V~~~  112 (204)
                      .+|||+|+|+||+.+.+.+..-   +++|.++
T Consensus         3 ikVgInGfGrIGr~vlR~l~~~~~~~veIVaI   34 (380)
T 2d2i_A            3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAI   34 (380)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEE
T ss_pred             cEEEEECcCHHHHHHHHHHhcCCCCCEEEEEE
Confidence            3899999999999999998754   4777654

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=92.99  E-value=0.2  Score=41.15  Aligned_cols=54  Identities=20%  Similarity=0.257  Sum_probs=41.8

Q ss_pred             CEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCC-----C---CCcceeCHHHHHHHHH
Q 045521           84 RSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNT-----K---YKGALVDESELVSALL  137 (204)
Q Consensus        84 ~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~-----~---~~G~lvd~~aL~~aL~  137 (204)
                      ++|.|.| .|.||+.+++.|..-|.+|+..+|+.....     .   +.+.+-|.+++.++++
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~   76 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALR   76 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHc
Confidence            5899999 599999999999999999999988754321     1   1166677777777765

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=92.99  E-value=0.13  Score=42.37  Aligned_cols=35  Identities=26%  Similarity=0.326  Sum_probs=30.3

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCC--EEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGC--FISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~--~V~~~~r~~  116 (204)
                      ..++|+|||.|.+|..+|..|..-|.  +|..+++..
T Consensus         6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            34689999999999999999988888  999998863

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=92.98  E-value=0.13  Score=41.00  Aligned_cols=36  Identities=19%  Similarity=0.356  Sum_probs=32.8

Q ss_pred             cCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           81 ISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        81 l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +.||++.|.|. |.||+++++.|..-|++|+..+|+.
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~   38 (255)
T 2q2v_A            2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGD   38 (255)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            67999999996 8999999999999999999988865

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=92.97  E-value=0.14  Score=40.43  Aligned_cols=38  Identities=18%  Similarity=0.190  Sum_probs=34.2

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .++.||++.|.|. |.||+++|+.|..-|++|+..+|+.
T Consensus         5 ~~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~   43 (253)
T 3qiv_A            5 MRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINA   43 (253)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCH
Confidence            4688999999995 8999999999999999999988864

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=92.97  E-value=0.17  Score=40.30  Aligned_cols=38  Identities=21%  Similarity=0.307  Sum_probs=34.2

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..|.||++.|.|- |.||+++|+.|..-|++|+..+|+.
T Consensus         8 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   46 (252)
T 3f1l_A            8 DLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNE   46 (252)
T ss_dssp             TTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999995 7899999999999999999988864

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=92.97  E-value=0.11  Score=45.65  Aligned_cols=35  Identities=31%  Similarity=0.441  Sum_probs=31.4

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR  114 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r  114 (204)
                      -|+||||+|||||+-|++=|.-|+--|.+|++--|
T Consensus        34 ~lkgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr   68 (491)
T 3ulk_A           34 YLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALR   68 (491)
T ss_dssp             GGTTSEEEEESCSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             HHcCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeC
Confidence            48999999999999999999999999999965433

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=92.96  E-value=0.097  Score=42.85  Aligned_cols=35  Identities=20%  Similarity=0.180  Sum_probs=32.2

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~  116 (204)
                      .++++.|+|.|..|+.++..|...|+ +|..++|+.
T Consensus       118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~  153 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV  153 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            57899999999999999999999998 799999974

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=92.95  E-value=0.097  Score=44.06  Aligned_cols=35  Identities=31%  Similarity=0.358  Sum_probs=31.4

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r~~  116 (204)
                      .|++|.|+|.|.||+..+++++.+|++ |++.+++.
T Consensus       179 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~  214 (363)
T 3m6i_A          179 LGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDE  214 (363)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            589999999999999999999999998 88777654

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=92.92  E-value=0.15  Score=41.13  Aligned_cols=38  Identities=32%  Similarity=0.494  Sum_probs=34.0

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .++.||++.|.|. |.||+++|+.|..-|++|+..+|+.
T Consensus        23 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~   61 (266)
T 3grp_A           23 FKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTRE   61 (266)
T ss_dssp             TCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999995 7899999999999999999888764

>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A*

Probab=92.90  E-value=0.083  Score=44.67  Aligned_cols=29  Identities=34%  Similarity=0.504  Sum_probs=24.2

Q ss_pred             EEEEEeCChHHHHHHHHHhhcCCEEEEEc
Q 045521           85 SVGIIGLGRIGMAVAKRAEAFGCFISYRS  113 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~  113 (204)
                      +|||+|+|+||+.+.+.+..-.++|.+++
T Consensus         2 kVgInG~G~IGr~vlr~l~~~~~evvain   30 (331)
T 2g82_O            2 KVGINGFGRIGRQVFRILHSRGVEVALIN   30 (331)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEEE
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCEEEEEe
Confidence            79999999999999998754488887543

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=92.88  E-value=0.1  Score=43.81  Aligned_cols=35  Identities=26%  Similarity=0.430  Sum_probs=32.1

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~  116 (204)
                      .|.+|.|+|.|.||...+++++.+|+ +|+..+++.
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~  201 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRK  201 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCH
Confidence            58999999999999999999999999 799888764

>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus}

Probab=92.86  E-value=0.098  Score=44.41  Aligned_cols=30  Identities=30%  Similarity=0.294  Sum_probs=24.7

Q ss_pred             CEEEEEeCChHHHHHHHHHhhc-CCEEEEEc
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAF-GCFISYRS  113 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~f-g~~V~~~~  113 (204)
                      .+|||.|||+|||.+.+.+..- .++|.+.+
T Consensus         3 ikV~InGfGrIGr~v~r~l~~~~~~evvaIn   33 (342)
T 2ep7_A            3 IKVGINGFGRIGRSFFRASWGREEIEIVAIN   33 (342)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTCTTCEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCceEEEEe
Confidence            4799999999999999998654 68886654

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=92.84  E-value=0.12  Score=40.18  Aligned_cols=56  Identities=18%  Similarity=0.164  Sum_probs=44.2

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHc-CCc
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLE-DRL  141 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~-g~i  141 (204)
                      .+.+|++.|.|. |.||+++|+.|..-|++|+..+|...      ..+-|++++.+++++ |++
T Consensus         3 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~------~D~~~~~~v~~~~~~~g~i   60 (223)
T 3uce_A            3 GSDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG------LDISDEKSVYHYFETIGAF   60 (223)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT------CCTTCHHHHHHHHHHHCSE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc------cCCCCHHHHHHHHHHhCCC
Confidence            478999999995 89999999999999999999988653      456677887777764 444

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=92.83  E-value=0.097  Score=41.44  Aligned_cols=34  Identities=21%  Similarity=0.246  Sum_probs=31.0

Q ss_pred             cCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcC
Q 045521           81 ISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSR  114 (204)
Q Consensus        81 l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r  114 (204)
                      +.||++.|.| -|.||+++|+.|..-|++|+..+|
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r   36 (246)
T 2uvd_A            2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYA   36 (246)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence            6789999998 589999999999999999988877

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=92.81  E-value=0.1  Score=44.46  Aligned_cols=30  Identities=27%  Similarity=0.362  Sum_probs=25.4

Q ss_pred             CEEEEEeCChHHHHHHHHHhhc-CCEEEEEc
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAF-GCFISYRS  113 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~f-g~~V~~~~  113 (204)
                      .+|||+|+|.||+.+.|.+..- .++|.+..
T Consensus        18 ikVgI~G~G~iGr~llR~l~~~p~veivain   48 (354)
T 3cps_A           18 GTLGINGFGRIGRLVLRACMERNDITVVAIN   48 (354)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCSSCEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHcCCCeEEEEec
Confidence            3899999999999999998754 68876654

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=92.81  E-value=0.14  Score=42.79  Aligned_cols=35  Identities=26%  Similarity=0.459  Sum_probs=32.2

Q ss_pred             CCCEEEEE-eCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGII-GLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIv-G~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|++|.|+ |.|.||...+++++.+|++|++.+++.
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~  185 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRN  185 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            69999999 799999999999999999999988754

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=92.80  E-value=0.081  Score=42.80  Aligned_cols=37  Identities=24%  Similarity=0.290  Sum_probs=33.0

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+.||++.|.| -|.||+++|+.|..-|++|+..+|+.
T Consensus         3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   40 (280)
T 1xkq_A            3 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSS   40 (280)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            47899999998 58999999999999999999988864

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=92.79  E-value=0.12  Score=43.08  Aligned_cols=33  Identities=27%  Similarity=0.379  Sum_probs=29.3

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCC--EEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGC--FISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~--~V~~~~r~~  116 (204)
                      ++|+|||.|.+|..+|..+..-|.  +|..+|+..
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~   35 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            479999999999999999987787  999998863

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=92.76  E-value=0.15  Score=44.06  Aligned_cols=38  Identities=24%  Similarity=0.290  Sum_probs=35.0

Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCC
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRA  115 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~  115 (204)
                      +..+.+.+|.|+|.|..|..+|+++...|. +|+.+||+
T Consensus       187 g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          187 EKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            447899999999999999999999999999 79888886

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=92.76  E-value=0.099  Score=46.24  Aligned_cols=33  Identities=12%  Similarity=0.077  Sum_probs=29.5

Q ss_pred             CEEEEEeCChHHHHHHHHHhhc--CCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAF--GCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~f--g~~V~~~~r~~  116 (204)
                      ++|+|||+|.+|..+|..|...  |.+|++++++.
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~   44 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT   44 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            5899999999999999999766  78999999864

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=92.76  E-value=0.2  Score=40.07  Aligned_cols=37  Identities=24%  Similarity=0.327  Sum_probs=31.9

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEE-cCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYR-SRA  115 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~-~r~  115 (204)
                      .++.||++.|.|. |.||+++|+.|..-|++|+.. ++.
T Consensus         4 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~   42 (259)
T 3edm_A            4 QRFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGA   42 (259)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCC
Confidence            3589999999995 789999999999999999877 443

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=92.75  E-value=0.13  Score=43.20  Aligned_cols=35  Identities=34%  Similarity=0.476  Sum_probs=31.9

Q ss_pred             CCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|++|.|.|. |.||+.+++.++..|++|+..+++.
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~  205 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTE  205 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCh
Confidence            5899999997 9999999999999999999887753

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=92.73  E-value=0.16  Score=40.42  Aligned_cols=37  Identities=27%  Similarity=0.363  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++.||++.|.|. |.||+++|+.|..-|++|+..+|+.
T Consensus         2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   39 (254)
T 1hdc_A            2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLD   39 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            478999999995 8999999999999999999988864

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*

Probab=92.72  E-value=0.094  Score=44.43  Aligned_cols=30  Identities=27%  Similarity=0.271  Sum_probs=24.7

Q ss_pred             CEEEEEeCChHHHHHHHHHhh---c-CCEEEEEc
Q 045521           84 RSVGIIGLGRIGMAVAKRAEA---F-GCFISYRS  113 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~---f-g~~V~~~~  113 (204)
                      .+|||+|+|.||+.+.+.+..   - +++|.+..
T Consensus         3 ikVgI~G~G~iGr~l~r~l~~~~~~~~~eivai~   36 (339)
T 2x5j_O            3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAIN   36 (339)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTSGGGTEEEEEEE
T ss_pred             eEEEEECcCHHHHHHHHHHHcCCCCCCEEEEEEe
Confidence            389999999999999999876   3 67776543

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=92.71  E-value=0.14  Score=46.81  Aligned_cols=74  Identities=19%  Similarity=0.282  Sum_probs=54.2

Q ss_pred             CcEEEeCCCC-CchhHHHHHHHHHHHHHhhHHHhcCCCCCCccccccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEc
Q 045521           36 GIQVTNTPDV-LTDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRS  113 (204)
Q Consensus        36 gI~v~n~~~~-~~~~vAE~~l~~~L~~~R~~~~~~~w~~~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~  113 (204)
                      +-++.+.... .....||.+.-+-|.++|-    ..|.. .. ...|++++|.|||+|.+|..+|+.|...|. ++..+|
T Consensus       284 ~~~~~~l~~~~dp~~la~~~~~Lnlklm~w----Rllp~-~g-~ekL~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD  357 (615)
T 4gsl_A          284 APRVVDLSSLLDPLKIADQSVDLNLKLMKW----RILPD-LN-LDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVD  357 (615)
T ss_dssp             CCEEEECHHHHCHHHHHHHHHHHHHHHHHH----HTCTT-CC-HHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             ceeEEeccccCCHHHHHhhhhhhhhHHHHH----hhcch-hh-HHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEc
Confidence            3455664433 6778899999888888864    33332 10 136899999999999999999999998887 466666


Q ss_pred             CC
Q 045521          114 RA  115 (204)
Q Consensus       114 r~  115 (204)
                      +.
T Consensus       358 ~D  359 (615)
T 4gsl_A          358 NG  359 (615)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=92.70  E-value=0.15  Score=39.02  Aligned_cols=33  Identities=30%  Similarity=0.455  Sum_probs=29.8

Q ss_pred             CEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|.|.| .|.||+.+++.|..-|.+|...+|+.
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            4789999 59999999999999999999998875

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=92.70  E-value=0.1  Score=41.61  Aligned_cols=54  Identities=11%  Similarity=0.159  Sum_probs=41.0

Q ss_pred             CEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCCC-----CCcceeCHHHHHHHHH
Q 045521           84 RSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNTK-----YKGALVDESELVSALL  137 (204)
Q Consensus        84 ~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~~-----~~G~lvd~~aL~~aL~  137 (204)
                      |+|.|.|. |.||+.+++.|..-|.+|+..+|+......     +.+.+-|.+++.++++
T Consensus         3 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~   62 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEAHEEIVACDLADAQAVHDLVK   62 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCCCTTEEECCCCTTCHHHHHHHHT
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCccccCCCccEEEccCCCHHHHHHHHc
Confidence            68999997 999999999999999999999887543211     1266666666666665

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=92.69  E-value=0.14  Score=43.60  Aligned_cols=35  Identities=23%  Similarity=0.313  Sum_probs=32.0

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcC-CEEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFG-CFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg-~~V~~~~r~~  116 (204)
                      .|++|.|+|.|.||+..+++++.+| .+|++.+++.
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~  230 (380)
T 1vj0_A          195 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP  230 (380)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCH
Confidence            5899999999999999999999999 5999988764

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=92.68  E-value=0.12  Score=42.89  Aligned_cols=34  Identities=21%  Similarity=0.207  Sum_probs=26.6

Q ss_pred             CCEEEEEeCChHHHHHHHHHhh-cCCEEE-EEcCCC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEA-FGCFIS-YRSRAE  116 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~-fg~~V~-~~~r~~  116 (204)
                      -.+|||||+|+||+.+++.++. -++++. .+++++
T Consensus         9 ~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~   44 (304)
T 3bio_A            9 KIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNP   44 (304)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC--
T ss_pred             CCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCH
Confidence            4589999999999999999876 467876 467654

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=92.68  E-value=0.12  Score=41.61  Aligned_cols=35  Identities=26%  Similarity=0.266  Sum_probs=29.8

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSR  114 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r  114 (204)
                      .+.||++.|.| -|.||+++|+.|..-|++|+..+|
T Consensus         8 ~~~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r   43 (276)
T 1mxh_A            8 ASECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYR   43 (276)
T ss_dssp             ---CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence            47899999998 589999999999999999999888

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=92.65  E-value=0.15  Score=38.78  Aligned_cols=33  Identities=24%  Similarity=0.399  Sum_probs=30.1

Q ss_pred             EEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .|.|||.|..|..+|..|+..|.+|..+++.+.
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~   36 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRG   36 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            499999999999999999999999999987654

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=92.64  E-value=0.13  Score=41.51  Aligned_cols=37  Identities=22%  Similarity=0.243  Sum_probs=32.9

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      ..+.||++.|.|. |.||+++|+.|..-|++|+..++.
T Consensus        24 ~~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~   61 (269)
T 4dmm_A           24 LPLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYAS   61 (269)
T ss_dssp             CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4689999999995 789999999999999999887764

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=92.64  E-value=0.1  Score=44.28  Aligned_cols=29  Identities=24%  Similarity=0.145  Sum_probs=24.0

Q ss_pred             CEEEEEeCChHHHHHHHHHhhc---CCEEEEE
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAF---GCFISYR  112 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~f---g~~V~~~  112 (204)
                      .+|||+|+|+||+.+.+.+..-   +++|.++
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~~~evvaI   34 (339)
T 3b1j_A            3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAI   34 (339)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSCCSEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence            3899999999999999998754   4777654

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=92.63  E-value=0.17  Score=39.89  Aligned_cols=37  Identities=19%  Similarity=0.370  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++.+|++.|.| .|.||+++++.|..-|++|+..+|+.
T Consensus         8 ~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~   45 (254)
T 2wsb_A            8 RLDGACAAVTGAGSGIGLEICRAFAASGARLILIDREA   45 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999998 58999999999999999999988864

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=92.59  E-value=0.14  Score=42.56  Aligned_cols=37  Identities=24%  Similarity=0.311  Sum_probs=31.6

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRA  115 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~  115 (204)
                      ..|++++|.|||+|.+|..+++.|...|. ++..+|+.
T Consensus        32 ~kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D   69 (292)
T 3h8v_A           32 EKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYD   69 (292)
T ss_dssp             CGGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             HHHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            46899999999999999999999998886 56666653

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=92.57  E-value=0.42  Score=38.93  Aligned_cols=57  Identities=23%  Similarity=0.297  Sum_probs=44.4

Q ss_pred             CEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCC-----C---CCcceeCHHHHHHHHHcCC
Q 045521           84 RSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNT-----K---YKGALVDESELVSALLEDR  140 (204)
Q Consensus        84 ~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~-----~---~~G~lvd~~aL~~aL~~g~  140 (204)
                      ++|.|.| .|.||+.+++.|..-|.+|++.+|......     .   +.+.+-|.+++.++++++.
T Consensus         2 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   67 (330)
T 2c20_A            2 NSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITEGAKFYNGDLRDKAFLRDVFTQEN   67 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCTTSEEEECCTTCHHHHHHHHHHSC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCchhhcCCCcEEEECCCCCHHHHHHHHhhcC
Confidence            5899998 599999999999999999999887643211     1   1277888899988888643

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=92.56  E-value=0.16  Score=42.71  Aligned_cols=34  Identities=12%  Similarity=0.204  Sum_probs=31.2

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      |||+|+|-|.-|++++..++.+|.+|+.+++.+.
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~   35 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ   35 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            7999999999999999999999999998887654

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=92.55  E-value=0.15  Score=41.31  Aligned_cols=38  Identities=21%  Similarity=0.215  Sum_probs=30.9

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..+.+|++.|.|. |.||+++|+.|..-|++|+..+|+.
T Consensus        24 ~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   62 (272)
T 4dyv_A           24 SKTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRL   62 (272)
T ss_dssp             ----CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4578999999995 7899999999999999999988864

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=92.55  E-value=0.13  Score=42.45  Aligned_cols=33  Identities=42%  Similarity=0.564  Sum_probs=28.9

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcC--CEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFG--CFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg--~~V~~~~r~~  116 (204)
                      ++|+|||.|.+|..+|..+..-|  .+|..+++..
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence            58999999999999999997767  5899999864

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=92.55  E-value=0.19  Score=39.89  Aligned_cols=37  Identities=24%  Similarity=0.292  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++.||++.|.| -|.||+++|+.|..-|++|+..+|+.
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   41 (249)
T 2ew8_A            4 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVP   41 (249)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCc
Confidence            57899999998 58999999999999999999888865

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=92.54  E-value=0.29  Score=40.44  Aligned_cols=38  Identities=21%  Similarity=0.156  Sum_probs=33.6

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..+.||++.|.|. |.||+++|+.|..-|++|+..++..
T Consensus        42 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~   80 (317)
T 3oec_A           42 NRLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCR   80 (317)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEeccc
Confidence            4689999999994 7999999999999999999887753

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=92.51  E-value=0.14  Score=44.10  Aligned_cols=34  Identities=15%  Similarity=0.149  Sum_probs=30.7

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      -.++-|+|.|++|+.++++++.+|++|+.+|+.+
T Consensus       204 ~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~  237 (386)
T 2we8_A          204 RPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARP  237 (386)
T ss_dssp             CCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            4599999999999999999999999999887643

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=92.51  E-value=0.17  Score=39.55  Aligned_cols=35  Identities=23%  Similarity=0.249  Sum_probs=31.1

Q ss_pred             CCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|++.|.|. |.||+++|+.|..-|++|+..+|+.
T Consensus         1 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~   36 (235)
T 3l77_A            1 EMKVAVITGASRGIGEAIARALARDGYALALGARSV   36 (235)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4789999995 7899999999999999999988864

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=92.49  E-value=0.11  Score=43.22  Aligned_cols=35  Identities=14%  Similarity=0.243  Sum_probs=32.1

Q ss_pred             CCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|++|.|+| .|.||+..++.++.+|++|+..+++.
T Consensus       148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~  183 (334)
T 3qwb_A          148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTD  183 (334)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            689999999 89999999999999999999888753

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=92.48  E-value=0.3  Score=40.18  Aligned_cols=34  Identities=18%  Similarity=0.131  Sum_probs=30.3

Q ss_pred             CCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           83 GRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        83 g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +|+|.|.| .|.||+.+++.|..-|.+|+..+|..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   36 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFH   36 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCC
Confidence            58999998 69999999999999999999988754

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=92.47  E-value=0.15  Score=41.64  Aligned_cols=56  Identities=23%  Similarity=0.285  Sum_probs=42.9

Q ss_pred             CCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCC---------CC---CCcceeCHHHHHHHHHc
Q 045521           83 GRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPN---------TK---YKGALVDESELVSALLE  138 (204)
Q Consensus        83 g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~---------~~---~~G~lvd~~aL~~aL~~  138 (204)
                      .++|.|.| .|.||+.+++.|..-|.+|...+|.....         ..   ..+.+-|.++|.++++.
T Consensus        11 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~   79 (318)
T 2r6j_A           11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKK   79 (318)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTT
T ss_pred             CCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcC
Confidence            36899999 59999999999998899999988875311         11   11677788888888763

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=92.47  E-value=0.21  Score=40.12  Aligned_cols=50  Identities=12%  Similarity=0.102  Sum_probs=41.1

Q ss_pred             CCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHc
Q 045521           82 SGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLE  138 (204)
Q Consensus        82 ~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~  138 (204)
                      .-++|.|.| .|.||+.+++.|..-|.+|+..+|..       +.+-|.+++.++++.
T Consensus        11 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~-------~Dl~d~~~~~~~~~~   61 (292)
T 1vl0_A           11 HHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQD-------LDITNVLAVNKFFNE   61 (292)
T ss_dssp             -CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT-------CCTTCHHHHHHHHHH
T ss_pred             ccceEEEECCCChHHHHHHHHHHhCCCeEEeccCcc-------CCCCCHHHHHHHHHh
Confidence            567899998 59999999999999999999998863       566677777777764

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=92.46  E-value=0.14  Score=41.52  Aligned_cols=38  Identities=21%  Similarity=0.378  Sum_probs=34.3

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..+.||++.|.|. |.||+++++.|..-|++|+..+|+.
T Consensus        24 ~~~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~   62 (286)
T 1xu9_A           24 EMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK   62 (286)
T ss_dssp             GGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             hhcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4589999999996 8999999999999999999988864

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=92.45  E-value=0.14  Score=40.97  Aligned_cols=37  Identities=16%  Similarity=0.327  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEeC---ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL---GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~---G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+.||++.|.|-   |.||+++|+.|..-|++|+..+|+.
T Consensus         6 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~   45 (265)
T 1qsg_A            6 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND   45 (265)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH
Confidence            478999999997   6999999999999999999888765

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=92.38  E-value=0.27  Score=40.89  Aligned_cols=56  Identities=27%  Similarity=0.201  Sum_probs=42.0

Q ss_pred             CCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCC----------------CC---CCcceeCHHHHHHHHHc
Q 045521           83 GRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPN----------------TK---YKGALVDESELVSALLE  138 (204)
Q Consensus        83 g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~----------------~~---~~G~lvd~~aL~~aL~~  138 (204)
                      +|+|.|.| .|.||+.+++.|..-|.+|+..+|.....                ..   +.+.+-|.+++.++++.
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~   76 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILRE   76 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHh
Confidence            47899999 59999999999999999999988864320                01   12777888888888875

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=92.37  E-value=0.13  Score=43.53  Aligned_cols=31  Identities=26%  Similarity=0.216  Sum_probs=25.0

Q ss_pred             CEEEEEeCChHHHHHHHHHhhc---CCEEEEEcC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAF---GCFISYRSR  114 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~f---g~~V~~~~r  114 (204)
                      .+|||+|+|.||+.+.|.+..-   .++|.+...
T Consensus         1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain~   34 (332)
T 1hdg_O            1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAIND   34 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEc
Confidence            4799999999999999998643   588876543

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=92.37  E-value=0.11  Score=43.10  Aligned_cols=35  Identities=17%  Similarity=0.227  Sum_probs=32.1

Q ss_pred             CCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|++|.|+| .|.||+.+++.++.+|++|+..+++.
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~  175 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSP  175 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            589999999 89999999999999999999888754

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=92.37  E-value=0.15  Score=40.97  Aligned_cols=37  Identities=24%  Similarity=0.197  Sum_probs=32.3

Q ss_pred             cCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           81 ISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        81 l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      +.+|++.|.|. |.||+++|+.|..-|++|+..+|+..
T Consensus         3 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~   40 (281)
T 3m1a_A            3 ESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTE   40 (281)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            57899999995 89999999999999999999888653

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=92.37  E-value=0.31  Score=39.63  Aligned_cols=59  Identities=14%  Similarity=0.136  Sum_probs=45.0

Q ss_pred             CCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCC-C---CCcceeCHHHHHHHHHcCC
Q 045521           82 SGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNT-K---YKGALVDESELVSALLEDR  140 (204)
Q Consensus        82 ~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~-~---~~G~lvd~~aL~~aL~~g~  140 (204)
                      .-++|.|.| .|.||+.+++.|..-|.+|++.+|...... .   +.+.+-|.+++.++++.++
T Consensus        11 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~l~~~~~~~Dl~d~~~~~~~~~~~~   74 (321)
T 2pk3_A           11 GSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEAKLPNVEMISLDIMDSQRVKKVISDIK   74 (321)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTCCCTTEEEEECCTTCHHHHHHHHHHHC
T ss_pred             CcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCccccceeeEEECCCCCHHHHHHHHHhcC
Confidence            467899998 599999999999999999999988754311 1   1277788899988888643

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=92.35  E-value=0.14  Score=40.21  Aligned_cols=38  Identities=29%  Similarity=0.406  Sum_probs=34.4

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..++||++.|.|. |.||+++|+.|..-|++|+..+|+.
T Consensus        10 ~~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~   48 (247)
T 3i1j_A           10 ELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTE   48 (247)
T ss_dssp             TTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCH
Confidence            4689999999995 8999999999999999999988864

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=92.35  E-value=0.19  Score=40.38  Aligned_cols=39  Identities=23%  Similarity=0.389  Sum_probs=34.3

Q ss_pred             ccccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           78 TTKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..++.||++.|.| -|.||+++|+.|..-|++|+..+|+.
T Consensus        16 ~~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   55 (267)
T 1vl8_A           16 VFDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNL   55 (267)
T ss_dssp             -CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4578999999999 58999999999999999999988864

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=92.34  E-value=0.2  Score=41.49  Aligned_cols=56  Identities=18%  Similarity=0.160  Sum_probs=42.8

Q ss_pred             CCEEEEEe-CChHHHHHHHHHhhcC-----CEEEEEcCCCCCCC----C---CCcceeCHHHHHHHHHc
Q 045521           83 GRSVGIIG-LGRIGMAVAKRAEAFG-----CFISYRSRAEKPNT----K---YKGALVDESELVSALLE  138 (204)
Q Consensus        83 g~tvGIvG-~G~IG~~va~~~~~fg-----~~V~~~~r~~~~~~----~---~~G~lvd~~aL~~aL~~  138 (204)
                      |++|.|.| .|.||+.+++.|..-|     .+|+..+|......    .   +.+.+-|.+++.++++.
T Consensus         1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~   69 (364)
T 2v6g_A            1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNPINYVQCDISDPDDSQAKLSP   69 (364)
T ss_dssp             CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSCCCSSCCEEEECCTTSHHHHHHHHTT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccccccCceEEEEeecCCHHHHHHHHhc
Confidence            57899999 5999999999998888     89999888654321    1   11667777777777764

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=92.34  E-value=0.14  Score=41.86  Aligned_cols=56  Identities=20%  Similarity=0.247  Sum_probs=42.3

Q ss_pred             CCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC-CC-------------CCC---CCcceeCHHHHHHHHHc
Q 045521           83 GRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE-KP-------------NTK---YKGALVDESELVSALLE  138 (204)
Q Consensus        83 g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~-~~-------------~~~---~~G~lvd~~aL~~aL~~  138 (204)
                      .++|.|.| .|.||+.+++.|..-|.+|...+|+. ..             ...   ..+.+-|.++|.++++.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~   77 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQ   77 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTT
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcC
Confidence            46899999 59999999999998899999988875 11             001   11666777888777764

>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*

Probab=92.30  E-value=0.27  Score=41.47  Aligned_cols=61  Identities=16%  Similarity=0.206  Sum_probs=45.5

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC-CC-----CCcceeCHHHHHHHHHcCCce
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN-TK-----YKGALVDESELVSALLEDRLA  142 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~-~~-----~~G~lvd~~aL~~aL~~g~i~  142 (204)
                      ..++|+|+|-|.+|+++++.++..|.+|+.++..+... ..     +.....|.++|++.+++.++-
T Consensus        10 ~~~~ili~g~g~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~~d~~~~~~~~d~~~l~~~~~~~~~d   76 (391)
T 1kjq_A           10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALRRVVELEKPH   76 (391)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCGGGGGSSEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCCchhhhccceEECCCCCHHHHHHHHHHcCCC
Confidence            46899999999999999999999999998877654321 11     113446788999888765554

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=92.30  E-value=0.22  Score=40.77  Aligned_cols=38  Identities=18%  Similarity=0.195  Sum_probs=33.6

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..+.+++|.|.|. |.||+.+++.|..-|.+|++.+|+.
T Consensus         7 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~   45 (342)
T 1y1p_A            7 VLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSA   45 (342)
T ss_dssp             SSCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             cCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3478999999997 9999999999999999999888753

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=92.27  E-value=0.25  Score=40.46  Aligned_cols=58  Identities=21%  Similarity=0.208  Sum_probs=43.7

Q ss_pred             cCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCC-----------C---CCcceeCHHHHHHHHHc
Q 045521           81 ISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNT-----------K---YKGALVDESELVSALLE  138 (204)
Q Consensus        81 l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~-----------~---~~G~lvd~~aL~~aL~~  138 (204)
                      -.+++|.|.| .|.||+.+++.|..-|.+|++.+|......           .   +.+.+-|.+++.++++.
T Consensus        12 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~   84 (335)
T 1rpn_A           12 SMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIK   84 (335)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHH
T ss_pred             ccCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccccchhhccccCceEEEECCCCCHHHHHHHHHH
Confidence            4688999998 599999999999999999999988654310           1   11777788888888875

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=92.27  E-value=0.15  Score=42.84  Aligned_cols=37  Identities=19%  Similarity=0.260  Sum_probs=32.7

Q ss_pred             cCCCEEEEEeCChHHHHH-HHHH-hhcCCE-EEEEcCCCC
Q 045521           81 ISGRSVGIIGLGRIGMAV-AKRA-EAFGCF-ISYRSRAEK  117 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~v-a~~~-~~fg~~-V~~~~r~~~  117 (204)
                      ..+++|.|+|.|.||... ++++ +.+|++ |++.+++..
T Consensus       171 ~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~  210 (357)
T 2b5w_A          171 WDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDR  210 (357)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcc
Confidence            345899999999999999 9999 999998 998887654

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=92.23  E-value=0.098  Score=42.91  Aligned_cols=37  Identities=32%  Similarity=0.380  Sum_probs=33.1

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus        23 ~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~   60 (297)
T 1xhl_A           23 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNE   60 (297)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            47899999998 58999999999999999999988864

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=92.21  E-value=0.2  Score=41.56  Aligned_cols=33  Identities=21%  Similarity=0.307  Sum_probs=29.2

Q ss_pred             CEEEEEeCChHHHHHHHHHhh--cCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEA--FGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~--fg~~V~~~~r~~  116 (204)
                      ++|+|||.|.+|..+|..+..  +|.+|..+|+..
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~   35 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            479999999999999999875  688999999865

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=92.19  E-value=0.17  Score=40.96  Aligned_cols=38  Identities=21%  Similarity=0.358  Sum_probs=33.7

Q ss_pred             cccCCCEEEEEeC-Ch--HHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-GR--IGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~--IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..+.||++.|.|. |.  ||+++|+.|..-|++|+..+|..
T Consensus        22 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   62 (280)
T 3nrc_A           22 GFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ   62 (280)
T ss_dssp             CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             cccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch
Confidence            4689999999995 44  99999999999999999988865

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=92.18  E-value=0.11  Score=48.27  Aligned_cols=33  Identities=24%  Similarity=0.286  Sum_probs=30.4

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|+|||.|.+|..+|..+..-|.+|+.+|++.
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  345 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNE  345 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCH
Confidence            689999999999999999998899999998763

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=92.16  E-value=0.11  Score=42.18  Aligned_cols=38  Identities=21%  Similarity=0.207  Sum_probs=30.3

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..+.||++.|.|. |.||+++|+.|..-|++|+..+|+.
T Consensus        29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   67 (281)
T 4dry_A           29 GSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRP   67 (281)
T ss_dssp             -----CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3689999999994 7899999999999999999988864

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=92.14  E-value=0.26  Score=40.16  Aligned_cols=38  Identities=32%  Similarity=0.297  Sum_probs=34.1

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+|.||++.|.|- |.||+++|+.|..-|++|+..+|+.
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~   81 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDE   81 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4689999999995 8899999999999999998888764

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=92.12  E-value=0.24  Score=40.17  Aligned_cols=56  Identities=27%  Similarity=0.284  Sum_probs=43.4

Q ss_pred             CCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCC-------------CC---CCcceeCHHHHHHHHHc
Q 045521           83 GRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPN-------------TK---YKGALVDESELVSALLE  138 (204)
Q Consensus        83 g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~-------------~~---~~G~lvd~~aL~~aL~~  138 (204)
                      .++|.|.| .|.||+.+++.|..-|.+|...+|.....             ..   ..|.+-|.++|.++++.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~   76 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQ   76 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhC
Confidence            47899999 59999999999998899999998874210             11   12777788888888863

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=92.10  E-value=0.13  Score=42.91  Aligned_cols=35  Identities=20%  Similarity=0.320  Sum_probs=32.0

Q ss_pred             CCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|++|.|+|. |.||+.+++.++.+|++|+..+++.
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~  201 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSE  201 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            5899999999 9999999999999999999887753

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=92.09  E-value=0.22  Score=40.43  Aligned_cols=60  Identities=18%  Similarity=0.158  Sum_probs=46.8

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCC------CC-----CCcceeCHHHHHHHHHc
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPN------TK-----YKGALVDESELVSALLE  138 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~------~~-----~~G~lvd~~aL~~aL~~  138 (204)
                      .++.||++.|.|. |.||+++|+.|..-|++|+..+|+....      ..     +...+-|.+++.++.+.
T Consensus        12 ~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~   83 (291)
T 3rd5_A           12 PSFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMAGQVEVRELDLQDLSSVRRFADG   83 (291)
T ss_dssp             CCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTSSSEEEEEECCTTCHHHHHHHHHT
T ss_pred             cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCeeEEEcCCCCHHHHHHHHHh
Confidence            4689999999995 8899999999999999999998864321      00     11677788888777764

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=92.05  E-value=0.12  Score=42.30  Aligned_cols=64  Identities=22%  Similarity=0.225  Sum_probs=45.6

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCC---EEEEEcCCCCCCCCCCcceeCHHHHHHHHH----cCCceEEEeeCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGC---FISYRSRAEKPNTKYKGALVDESELVSALL----EDRLAAAVLDVFE  150 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~---~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~----~g~i~ga~lDV~~  150 (204)
                      .++.||++.|.|. |.||+++|+.|..-|.   +|+..+|+...          .+.+.+.++    .+++.....|+.+
T Consensus        29 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~----------~~~~~~~l~~~~~~~~~~~~~~Dv~d   98 (287)
T 3rku_A           29 ERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEK----------LEELKKTIDQEFPNAKVHVAQLDITQ   98 (287)
T ss_dssp             HHHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHH----------HHHHHHHHHHHCTTCEEEEEECCTTC
T ss_pred             hhcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHH----------HHHHHHHHHhhCCCCeEEEEECCCCC
Confidence            4689999999995 7899999999977776   99888886421          133444443    2356667778876


Q ss_pred             CC
Q 045521          151 HE  152 (204)
Q Consensus       151 ~E  152 (204)
                      .|
T Consensus        99 ~~  100 (287)
T 3rku_A           99 AE  100 (287)
T ss_dssp             GG
T ss_pred             HH
Confidence            54

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*

Probab=92.02  E-value=0.13  Score=43.65  Aligned_cols=28  Identities=25%  Similarity=0.218  Sum_probs=22.9

Q ss_pred             EEEEEeCChHHHHHHHHHhhc---CCEEEEE
Q 045521           85 SVGIIGLGRIGMAVAKRAEAF---GCFISYR  112 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~f---g~~V~~~  112 (204)
                      +|||+|+|.||+.+.|.+..-   .++|.+.
T Consensus         3 kVgInG~G~IGr~llR~l~~~~~p~~eivaI   33 (337)
T 1rm4_O            3 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVI   33 (337)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSCSEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEE
Confidence            799999999999999998654   4566544

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=91.98  E-value=0.17  Score=40.49  Aligned_cols=39  Identities=23%  Similarity=0.417  Sum_probs=34.3

Q ss_pred             ccccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           78 TTKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ...+.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus        24 m~~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~   63 (262)
T 3rkr_A           24 MSSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDV   63 (262)
T ss_dssp             -CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             hhccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCH
Confidence            3568999999999 48999999999999999999988864

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=91.98  E-value=0.2  Score=38.11  Aligned_cols=36  Identities=17%  Similarity=0.111  Sum_probs=32.0

Q ss_pred             CCCEEEEEe-CChHHHHHHHHHhhcCC--EEEEEcCCCC
Q 045521           82 SGRSVGIIG-LGRIGMAVAKRAEAFGC--FISYRSRAEK  117 (204)
Q Consensus        82 ~g~tvGIvG-~G~IG~~va~~~~~fg~--~V~~~~r~~~  117 (204)
                      .+++|.|.| .|.||+++++.|..-|.  +|...+|+..
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~   42 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKAL   42 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCC
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCc
Confidence            478999999 79999999999999998  9999888754

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=91.97  E-value=0.24  Score=39.41  Aligned_cols=38  Identities=21%  Similarity=0.281  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      ++.||++.|.|. |.||+++++.|..-|++|+..+|+..
T Consensus         3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   41 (256)
T 2d1y_A            3 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPE   41 (256)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            478999999994 89999999999999999999888653

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=91.96  E-value=0.12  Score=42.76  Aligned_cols=35  Identities=14%  Similarity=0.192  Sum_probs=32.0

Q ss_pred             CCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|++|.|.| .|.||+.+++.++..|++|+..+++.
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~  175 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTA  175 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            589999999 79999999999999999999887754

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=91.95  E-value=0.1  Score=48.52  Aligned_cols=34  Identities=21%  Similarity=0.332  Sum_probs=30.8

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      =++|||||.|.+|..+|..+..-|.+|+.+|++.
T Consensus       314 i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  347 (715)
T 1wdk_A          314 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINE  347 (715)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCEEEEECCChhhHHHHHHHHhCCCEEEEEECCH
Confidence            3589999999999999999998899999999864

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=91.95  E-value=0.37  Score=38.72  Aligned_cols=51  Identities=10%  Similarity=0.177  Sum_probs=41.6

Q ss_pred             CEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHc
Q 045521           84 RSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLE  138 (204)
Q Consensus        84 ~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~  138 (204)
                      ++|.|.|. |.||+.+++.|. -|.+|++.+|...   .+.+.+-|.+++.++++.
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~---~~~~D~~d~~~~~~~~~~   52 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA-PVGNLIALDVHSK---EFCGDFSNPKGVAETVRK   52 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCS---SSCCCTTCHHHHHHHHHH
T ss_pred             CeEEEECCCCHHHHHHHHHhh-cCCeEEEeccccc---cccccCCCHHHHHHHHHh
Confidence            37899996 999999999998 7999999998752   223777788888888875

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=91.94  E-value=0.099  Score=42.37  Aligned_cols=38  Identities=26%  Similarity=0.329  Sum_probs=30.6

Q ss_pred             ccccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           78 TTKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ...+. |++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus        17 ~~~~~-k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~   55 (272)
T 2nwq_A           17 GSHMS-STLFITGATSGFGEACARRFAEAGWSLVLTGRRE   55 (272)
T ss_dssp             ----C-CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCcC-cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            34577 9999999 47999999999999999999988864

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=91.93  E-value=0.22  Score=39.62  Aligned_cols=37  Identities=24%  Similarity=0.362  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++.||++.|.| -|.||+++|+.|..-|++|+..+|+.
T Consensus         9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   46 (263)
T 3ak4_A            9 DLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDV   46 (263)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999999 57999999999999999999888764

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=91.92  E-value=0.16  Score=42.81  Aligned_cols=30  Identities=33%  Similarity=0.321  Sum_probs=24.8

Q ss_pred             CEEEEEeCChHHHHHHHHHhh-cCCEEEEEc
Q 045521           84 RSVGIIGLGRIGMAVAKRAEA-FGCFISYRS  113 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~-fg~~V~~~~  113 (204)
                      .+|||+|+|+||+.+++.+.. -+++|.+..
T Consensus         4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~   34 (335)
T 1u8f_O            4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAIN   34 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEE
T ss_pred             eEEEEEccCHHHHHHHHHHHcCCCcEEEEec
Confidence            489999999999999999854 468876654

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=91.92  E-value=0.34  Score=39.33  Aligned_cols=34  Identities=18%  Similarity=0.191  Sum_probs=30.9

Q ss_pred             CCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           83 GRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        83 g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +++|.|.| .|.||+.+++.|..-|.+|++.+|+.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   36 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSI   36 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            47999999 69999999999999999999998873

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=91.90  E-value=0.26  Score=40.32  Aligned_cols=40  Identities=20%  Similarity=0.133  Sum_probs=35.2

Q ss_pred             cccccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           77 LTTKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        77 ~~~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +..++.||++.|.|. |.||+++|+.|..-|++|+..+|..
T Consensus        22 m~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~   62 (299)
T 3t7c_A           22 MAGKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCK   62 (299)
T ss_dssp             CCCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             cccccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeccc
Confidence            345799999999995 7899999999999999999988763

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=91.86  E-value=0.17  Score=39.72  Aligned_cols=37  Identities=24%  Similarity=0.346  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++.+|++.|.| .|.||+++++.|..-|++|+..+|+.
T Consensus         3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~   40 (251)
T 1zk4_A            3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHS   40 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999998 58999999999999999999888864

>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}

Probab=91.86  E-value=0.2  Score=42.55  Aligned_cols=65  Identities=15%  Similarity=0.167  Sum_probs=47.6

Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCC-------CCCcceeCHHHHHHHHHcCCceEEE
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNT-------KYKGALVDESELVSALLEDRLAAAV  145 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~-------~~~G~lvd~~aL~~aL~~g~i~ga~  145 (204)
                      +..++|+|+|-|.++..+++.++.+|.++++++.......       .+....-|.++|+++.++.++-+..
T Consensus         5 ~~~~~ilI~g~g~~~~~~~~a~~~~G~~~v~v~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~~d~v~   76 (403)
T 4dim_A            5 YDNKRLLILGAGRGQLGLYKAAKELGIHTIAGTMPNAHKPCLNLADEISYMDISNPDEVEQKVKDLNLDGAA   76 (403)
T ss_dssp             -CCCEEEEECCCGGGHHHHHHHHHHTCEEEEEECSSCCHHHHHHCSEEEECCTTCHHHHHHHTTTSCCSEEE
T ss_pred             cCCCEEEEECCcHhHHHHHHHHHHCCCEEEEEcCCCCCCcchhhCCeEEEecCCCHHHHHHHHHHcCCCEEE
Confidence            4689999999999999999999999999988865321100       0114455789999988877665433

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=91.83  E-value=0.17  Score=40.96  Aligned_cols=56  Identities=13%  Similarity=0.097  Sum_probs=43.2

Q ss_pred             CCEEEEEeC-ChHHHHHHHHHhhc--CCEEEEEcCCCCCC-----CC-CCcceeCHHHHHHHHHc
Q 045521           83 GRSVGIIGL-GRIGMAVAKRAEAF--GCFISYRSRAEKPN-----TK-YKGALVDESELVSALLE  138 (204)
Q Consensus        83 g~tvGIvG~-G~IG~~va~~~~~f--g~~V~~~~r~~~~~-----~~-~~G~lvd~~aL~~aL~~  138 (204)
                      +++|.|.|. |.||+.+++.|..-  |.+|+..+|+....     .. +.+.+-|.+++.+++++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~   66 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVVNSGPFEVVNALDFNQIEHLVEV   66 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCHHHHSSCEEECCTTCHHHHHHHHHH
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCccccccCCCceEEecCCCHHHHHHHHhh
Confidence            578999996 99999999999887  89999988865432     11 12777788888888774

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=91.81  E-value=0.16  Score=42.70  Aligned_cols=35  Identities=20%  Similarity=0.224  Sum_probs=31.9

Q ss_pred             CCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|++|.|.| .|.||+.+++.++..|++|+..+++.
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~  197 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQ  197 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            589999999 79999999999999999999888753

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=91.81  E-value=0.25  Score=39.46  Aligned_cols=37  Identities=14%  Similarity=0.280  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   41 (260)
T 1nff_A            4 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILD   41 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999999 58999999999999999999888864

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=91.79  E-value=0.18  Score=40.47  Aligned_cols=38  Identities=26%  Similarity=0.369  Sum_probs=34.1

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..+.||++.|.|. |.||+++|+.|..-|++|+..+|+.
T Consensus         6 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~   44 (267)
T 3t4x_A            6 MQLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRRE   44 (267)
T ss_dssp             CCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999995 7899999999999999999988864

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=91.79  E-value=0.11  Score=43.76  Aligned_cols=35  Identities=14%  Similarity=0.269  Sum_probs=32.0

Q ss_pred             CCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|++|.|+| .|.||+.++++++.+|++|+..+++.
T Consensus       163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  198 (362)
T 2c0c_A          163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSD  198 (362)
T ss_dssp             TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCH
Confidence            589999999 79999999999999999999888753

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=91.78  E-value=0.22  Score=40.72  Aligned_cols=38  Identities=21%  Similarity=0.392  Sum_probs=33.3

Q ss_pred             cccCCCEEEEEeC-Ch--HHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-GR--IGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~--IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..+.||++.|.|. |.  ||+++|+.|..-|++|+..+|..
T Consensus        27 ~~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~   67 (293)
T 3grk_A           27 GLLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGD   67 (293)
T ss_dssp             CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSH
T ss_pred             ccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCH
Confidence            4589999999997 44  99999999999999999888763

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=91.77  E-value=0.18  Score=42.08  Aligned_cols=35  Identities=23%  Similarity=0.327  Sum_probs=32.0

Q ss_pred             CCCEEEEEeCC-hHHHHHHHHHhhc-CCEEEEEcCCC
Q 045521           82 SGRSVGIIGLG-RIGMAVAKRAEAF-GCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G-~IG~~va~~~~~f-g~~V~~~~r~~  116 (204)
                      .|++|.|.|.| .||+.++++++.. |++|+..+++.
T Consensus       170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~  206 (347)
T 1jvb_A          170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE  206 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCH
Confidence            58999999999 9999999999998 99999888754

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=91.77  E-value=0.13  Score=43.49  Aligned_cols=30  Identities=33%  Similarity=0.365  Sum_probs=24.3

Q ss_pred             EEEEEeCChHHHHHHHHHhhc-CCEEEEEcC
Q 045521           85 SVGIIGLGRIGMAVAKRAEAF-GCFISYRSR  114 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~f-g~~V~~~~r  114 (204)
                      +|||+|+|.||+.+.|.+..- .++|.+...
T Consensus         3 kVgI~G~G~iGr~l~R~l~~~~~veivain~   33 (334)
T 3cmc_O            3 KVGINGFGRIGRNVFRAALKNPDIEVVAVND   33 (334)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTEEEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHhCCCCeEEEEEeC
Confidence            799999999999999998643 577765543

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=91.76  E-value=0.15  Score=43.17  Aligned_cols=29  Identities=24%  Similarity=0.181  Sum_probs=23.8

Q ss_pred             CEEEEEeCChHHHHHHHHHhhc-CCEEEEE
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAF-GCFISYR  112 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~f-g~~V~~~  112 (204)
                      .+|||+|+|.||+.+++.+... ++++.+.
T Consensus         2 ikVgIiGaG~iG~~~~r~L~~~p~~elvav   31 (340)
T 1b7g_O            2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGV   31 (340)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEE
T ss_pred             eEEEEEecCHHHHHHHHHHHcCCCCEEEEE
Confidence            3799999999999999998754 5777554

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=91.75  E-value=0.14  Score=43.84  Aligned_cols=30  Identities=17%  Similarity=0.094  Sum_probs=27.3

Q ss_pred             CEEEEEeCChHHHHHHHHHhh-cCCEEEEEc
Q 045521           84 RSVGIIGLGRIGMAVAKRAEA-FGCFISYRS  113 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~-fg~~V~~~~  113 (204)
                      ++|+|||.|.+|..+|..|.. -|.+|..++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~   33 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLT   33 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            489999999999999999976 489999998

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=91.70  E-value=0.66  Score=41.32  Aligned_cols=79  Identities=19%  Similarity=0.164  Sum_probs=52.5

Q ss_pred             cCCCEEEEEeCChHHHH-HHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCc
Q 045521           81 ISGRSVGIIGLGRIGMA-VAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEEL  159 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~-va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l  159 (204)
                      ..+++|-+||.|.+|.. +|++|+..|.+|.+.|....+            ...+.|++-.+     .++....  +..+
T Consensus        17 ~~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~------------~~~~~L~~~gi-----~~~~G~~--~~~~   77 (524)
T 3hn7_A           17 FQGMHIHILGICGTFMGSLALLARALGHTVTGSDANIYP------------PMSTQLEQAGV-----TIEEGYL--IAHL   77 (524)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCT------------THHHHHHHTTC-----EEEESCC--GGGG
T ss_pred             ecCCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCc------------HHHHHHHHCCC-----EEECCCC--HHHc
Confidence            46899999999999996 799999999999999876422            12344554323     2221110  1123


Q ss_pred             -CCCCceEEcccCCCCcHHH
Q 045521          160 -FGLENVVLLPHAASGTEET  178 (204)
Q Consensus       160 -~~~~nvilTPH~a~~t~~~  178 (204)
                       ...+-|++||.+.-...+-
T Consensus        78 ~~~~d~vV~Spgi~~~~p~l   97 (524)
T 3hn7_A           78 QPAPDLVVVGNAMKRGMDVI   97 (524)
T ss_dssp             CSCCSEEEECTTCCTTSHHH
T ss_pred             CCCCCEEEECCCcCCCCHHH
Confidence             2467899999998777654

>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}

Probab=91.69  E-value=0.19  Score=42.86  Aligned_cols=30  Identities=37%  Similarity=0.306  Sum_probs=24.8

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCCEEEEE
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYR  112 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~  112 (204)
                      ..+|||.|||+||+.+.+.+..-+++|..+
T Consensus        21 ~~kVaInGfGrIGr~vlr~l~e~~~~ivaI   50 (356)
T 3hja_A           21 SMKLAINGFGRIGRNVFKIAFERGIDIVAI   50 (356)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CeEEEEECCCHHHHHHHHHHHHCCCCEEEE
Confidence            468999999999999999987667887644

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=91.68  E-value=0.22  Score=39.61  Aligned_cols=34  Identities=18%  Similarity=0.235  Sum_probs=30.4

Q ss_pred             CCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           83 GRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        83 g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   36 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQ   36 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGG
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            78999998 58999999999999999999888764

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=91.67  E-value=0.16  Score=42.68  Aligned_cols=35  Identities=31%  Similarity=0.377  Sum_probs=31.9

Q ss_pred             CCCEEEEE-eCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGII-GLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIv-G~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|++|.|. |.|.||+.++++++..|++|+..+++.
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~  202 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGST  202 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            68999999 689999999999999999999888754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	204
d1qp8a2	121	c.23.12.1 (A:1-82,A:264-302) Putative formate dehy	9e-19
d1gdha1	191	c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyp	4e-18
d1ygya1	184	c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase	1e-12
d1mx3a1	193	c.2.1.4 (A:126-318) Transcription corepressor CtbP	1e-11
d1gdha2	129	c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrog	6e-11
d2naca2	186	c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenas	6e-11
d1mx3a2	133	c.23.12.1 (A:27-125,A:319-352) Transcription corep	8e-11
d1dxya2	131	c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproa	2e-09
d1j4aa1	197	c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lacto	3e-09
d1j4aa2	134	c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogen	3e-09
d2naca1	188	c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudom	5e-09
d1qp8a1	181	c.2.1.4 (A:83-263) Putative formate dehydrogenase	7e-09
d1sc6a1	188	c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase	2e-08
d1ygya2	130	c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehy	5e-07
d1sc6a2	132	c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate deh	1e-06
d1dxya1	199	c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydro	2e-04
d2jfga1	93	c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-	8e-04

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 121

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 76.2 bits (187), Expect = 9e-19
 Identities = 15/103 (14%), Positives = 28/103 (27%), Gaps = 22/103 (21%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
            AE +  +P+L+ +   +AGLD +           V                 + +  +R
Sbjct: 41  TAEELAKMPRLKFIQVVTAGLDHLPWESIPPHVT-VAGNAGSNGYGNERVWRQMVMEAVR 99

Query: 64  RFVRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFG 106
                                 +     G     +AKR +  G
Sbjct: 100 N---------------------LITYATGGRPRNIAKREDYIG 121

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 191

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score = 76.5 bits (187), Expect = 4e-18
 Identities = 45/190 (23%), Positives = 63/190 (33%), Gaps = 62/190 (32%)

Query: 46  LTDDVADAAIGLTLAVLRRFVRSE---------DGEMGYKLTTKISGRSVGIIGLGRIGM 96
           +T   A+ A+ L L   RR    E           E    +  K+  +++GI G G IG 
Sbjct: 1   VTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQ 60

Query: 97  AVAKRAEAFGCFISYRSRAEK------------------------------PNTKYKGAL 126
           A+AKRA+ F   I Y                                    P+T      
Sbjct: 61  ALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYF 120

Query: 127 VDESEL-----------------------VSALLEDRLAAAVLDVFEHEPQVPEELFGLE 163
            +++ +                       V+AL   RLA A  DVF  EP + E  + L 
Sbjct: 121 FNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLP 180

Query: 164 NVVLLPHAAS 173
           N  L PH  S
Sbjct: 181 NTFLFPHIGS 190

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 61.5 bits (148), Expect = 1e-12
 Identities = 45/181 (24%), Positives = 63/181 (34%), Gaps = 57/181 (31%)

Query: 47  TDDVADAAIGLTLAVLRRF------VRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAK 100
               A+ A+ L LA  R+       +R    +      T+I G++VG++GLGRIG  VA+
Sbjct: 2   IHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQ 61

Query: 101 RAEAFGCFISYRSRAEK----------------------------PNTKYKGALVDESEL 132
           R  AFG ++                                    P T     L+D+  L
Sbjct: 62  RIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEAL 121

Query: 133 -----------------------VSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLP 169
                                    A+    + AA LDVF  EP     LF L  VV+ P
Sbjct: 122 AKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTP 181

Query: 170 H 170
           H
Sbjct: 182 H 182

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 193

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score = 58.5 bits (140), Expect = 1e-11
 Identities = 40/192 (20%), Positives = 59/192 (30%), Gaps = 67/192 (34%)

Query: 48  DDVADAAIGLTLAVLRRF------VRS-------EDGEMGYKLTTKISGRSVGIIGLGRI 94
           ++ AD+ +   L + RR       +R        E          +I G ++GIIGLGR+
Sbjct: 1   EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRV 60

Query: 95  G------------------------------------------------MAVAKRAEAFG 106
           G                                                +          
Sbjct: 61  GQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHH 120

Query: 107 CFISYRSRAEKPNTKY----KGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEE--LF 160
               +  +  +         +G LVDE  L  AL E R+  A LDV E EP    +  L 
Sbjct: 121 LINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLK 180

Query: 161 GLENVVLLPHAA 172
              N++  PHAA
Sbjct: 181 DAPNLICTPHAA 192

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 129

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score = 55.8 bits (134), Expect = 6e-11
 Identities = 18/54 (33%), Positives = 25/54 (46%)

Query: 12  PKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRF 65
             ++ ++T S G D IDL  CK +GI+V N P   T    D A      +   F
Sbjct: 66  ENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDALF 119

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score = 56.9 bits (137), Expect = 6e-11
 Identities = 11/66 (16%), Positives = 19/66 (28%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
             E I     L++  T   G D +DL    ++ + V       +  +   A         
Sbjct: 104 TPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSTTLTAQARYAAGTREI 163

Query: 64  RFVRSE 69
                E
Sbjct: 164 LECFFE 169

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score = 55.3 bits (133), Expect = 8e-11
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 1/70 (1%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
             E ++    L I+    +G D ID+    + GI V N P         A+I +     R
Sbjct: 56  TREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASV-YSEQASIEMREEAAR 114

Query: 64  RFVRSEDGEM 73
              R+  G +
Sbjct: 115 EIRRAITGRI 124

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 131

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 51.6 bits (123), Expect = 2e-09
 Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 4   DAELIDS--LPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAV 61
            A + +      ++ +   + G D ID+   K+ GI+++N P      V +        +
Sbjct: 57  AAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHL 116

Query: 62  LRRFVRSE 69
           +    + E
Sbjct: 117 VDFLTKGE 124

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 197

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 52.5 bits (124), Expect = 3e-09
 Identities = 32/193 (16%), Positives = 54/193 (27%), Gaps = 70/193 (36%)

Query: 50  VADAAIGLTLAVLRRF------VRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAE 103
           +A+ A      +LR+       V   D      +  ++  + VG++G G IG    +  E
Sbjct: 4   IAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIME 63

Query: 104 AFGCFISYRSRAEKPNTKYKGA-------------------------------------- 125
            FG  +        P  + KG                                       
Sbjct: 64  GFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMK 123

Query: 126 ------------LVDESELVSALLEDRLAAAVLDVFEHEPQVPEE--------------L 159
                       LVD   ++  L   ++    +DV+E E  +  E              L
Sbjct: 124 QDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADL 183

Query: 160 FGLENVVLLPHAA 172
               NV++ P  A
Sbjct: 184 IARPNVLVTPKTA 196

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 51.1 bits (122), Expect = 3e-09
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 4   DAELIDSLP--KLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAV 61
            AE + +L    +  ++  + G+D ID+ K KE G Q+TN P          A+   +  
Sbjct: 58  IAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVY---SYTTHAVRNMVVK 114

Query: 62  LRRFVRS 68
                  
Sbjct: 115 AFDNNLE 121

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score = 51.6 bits (122), Expect = 5e-09
 Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 135 ALLEDRLAAAVLDVFEHEPQVPE-ELFGLENVVLLPHAA 172
           AL   RLA    DV+  +P   +     +    + PH +
Sbjct: 149 ALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHIS 187

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 51.3 bits (121), Expect = 7e-09
 Identities = 11/37 (29%), Positives = 13/37 (35%), Gaps = 2/37 (5%)

Query: 138 EDRLAAAVLDVFEHEPQVPE--ELFGLENVVLLPHAA 172
           E        DV+       +  E F L NVV  P  A
Sbjct: 144 ERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVA 180

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 50.4 bits (119), Expect = 2e-08
 Identities = 38/186 (20%), Positives = 56/186 (30%), Gaps = 60/186 (32%)

Query: 47  TDDVADAAIGLTLAVLRRF------VRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAK 100
           T  VA+  IG  L +LR             G      + +  G+ +GIIG G IG  +  
Sbjct: 2   TRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGI 61

Query: 101 RAEAFGCFISYRSRAEKPN--------------------------TKYKGALVDESEL-- 132
            AE+ G ++ +     K                                  ++   E+  
Sbjct: 62  LAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISL 121

Query: 133 ---------------------VSALLEDRLAAAVLDVFEHEPQVPEE-----LFGLENVV 166
                                  AL    LA A +DVF  EP    +     L   +NV+
Sbjct: 122 MKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVL 181

Query: 167 LLPHAA 172
           L PH  
Sbjct: 182 LTPHIG 187

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 130

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 45.1 bits (106), Expect = 5e-07
 Identities = 20/66 (30%), Positives = 32/66 (48%)

Query: 5   AELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR 64
           AE++ + PKL+IVA    GLD +D+     +G+ V N P   +   A    G  +A   R
Sbjct: 56  AEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVR 115

Query: 65  FVRSED 70
              + +
Sbjct: 116 LALAGE 121

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 44.3 bits (104), Expect = 1e-06
 Identities = 13/62 (20%), Positives = 28/62 (45%)

Query: 4   DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
             ++I++  KL  +   + G +++DL    ++GI V N P   T +  +         L 
Sbjct: 60  TEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVAGKLI 119

Query: 64  RF 65
           ++
Sbjct: 120 KY 121

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 199

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 38.7 bits (88), Expect = 2e-04
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 14/51 (27%)

Query: 136 LLEDRLAAAVLDVFEHEPQVP--------------EELFGLENVVLLPHAA 172
           L   +LA   +D +E+E +                +EL G+ NVVL PH A
Sbjct: 147 LKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIA 197

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Length = 93

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

 Score = 35.0 bits (80), Expect = 8e-04
 Identities = 12/43 (27%), Positives = 16/43 (37%)

Query: 81  ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYK 123
             G++V IIGLG  G++      A G           P    K
Sbjct: 3   YQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDK 45

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	204
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	100.0
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	100.0
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	100.0
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	100.0
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	100.0
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	100.0
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	100.0
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	100.0
d1qp8a2	121	Putative formate dehydrogenase {Archaeon Pyrobacul	99.88
d1ygya2	130	Phosphoglycerate dehydrogenase {Mycobacterium tube	99.82
d1mx3a2	133	Transcription corepressor CtbP {Human (Homo sapien	99.76
d1dxya2	131	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	99.74
d2naca2	186	Formate dehydrogenase {Pseudomonas sp., strain 101	99.72
d1sc6a2	132	Phosphoglycerate dehydrogenase {Escherichia coli [	99.7
d1gdha2	129	D-glycerate dehydrogenase {Hyphomicrobium methylov	99.67
d1j4aa2	134	D-lactate dehydrogenase {Lactobacillus helveticus	99.63
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	98.65
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	98.07
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.05
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.93
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	97.85
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	97.81
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	97.78
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	97.73
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.72
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	97.71
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	97.54
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	97.48
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.45
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.42
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	97.34
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	97.29
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.27
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	97.27
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.23
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.18
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.17
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	97.11
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	97.08
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.93
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.93
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.9
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.87
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	96.84
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.72
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	96.71
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.67
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.66
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.62
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.55
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.55
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.53
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	96.45
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.45
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.43
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	96.41
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.37
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	96.35
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	96.31
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.31
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.29
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	96.26
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	96.22
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	96.21
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.21
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.18
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	96.18
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	96.18
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	96.17
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	96.17
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	96.13
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	96.1
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.02
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	95.91
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	95.9
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	95.87
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	95.86
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	95.85
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.79
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	95.78
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	95.76
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	95.73
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	95.7
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.68
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	95.67
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.64
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	95.63
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	95.6
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	95.57
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.57
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	95.55
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	95.52
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.5
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	95.5
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	95.45
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.44
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	95.43
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	95.43
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.42
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	95.37
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.36
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	95.34
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	95.34
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	95.33
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.3
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	95.29
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.25
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	95.25
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	95.23
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	95.23
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.19
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	95.18
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	95.16
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.15
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	95.15
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	95.14
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	95.13
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	95.08
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	95.07
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	95.04
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.01
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	94.98
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	94.9
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	94.85
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	94.81
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	94.8
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.79
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	94.76
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.75
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	94.7
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	94.67
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	94.63
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	94.6
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	94.6
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	94.59
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	94.53
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	94.49
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	94.49
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	94.46
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	94.39
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	94.35
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	94.35
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	94.32
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	94.3
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	94.28
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	94.22
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	94.21
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	94.21
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.2
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	94.18
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	94.13
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	94.02
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	93.98
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	93.98
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	93.93
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	93.9
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	93.79
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	93.75
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	93.72
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	93.71
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.7
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	93.66
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	93.64
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	93.59
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	93.57
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.51
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	93.51
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	93.5
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	93.47
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	93.44
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	93.41
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	93.31
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	93.31
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	93.29
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	93.28
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	93.22
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.21
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	93.05
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	93.01
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	92.89
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	92.79
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	92.77
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.73
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.67
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	92.63
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	92.59
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	92.54
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	92.51
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	92.45
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.4
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	92.31
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	92.2
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	92.19
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	92.08
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	92.05
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	92.04
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	91.95
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.94
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	91.85
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	91.84
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	91.82
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	91.82
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	91.6
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	91.55
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	91.53
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	91.49
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	91.43
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	91.15
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	91.09
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	91.0
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	90.95
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	90.89
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	90.6
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	90.57
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	90.52
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	90.52
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	90.41
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	90.37
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.29
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.27
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	90.22
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	90.2
d2fcra_	173	Flavodoxin {Chondrus crispus [TaxId: 2769]}	90.11
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	90.1
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	90.1
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	90.01
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	89.93
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.9
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	89.85
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	89.85
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	89.73
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	89.69
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	89.6
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	89.45
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	89.24
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	89.14
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	89.0
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	88.98
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	88.95
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	88.89
d1yoba1	179	Flavodoxin {Azotobacter vinelandii [TaxId: 354]}	88.89
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	88.84
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	88.79
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	88.75
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	88.75
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	88.61
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	88.44
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	88.32
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	88.3
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	88.13
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	88.11
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	88.1
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	87.77
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	87.67
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	87.61
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	87.52
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	87.45
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	87.27
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	87.26
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	87.02
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	86.99
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	86.69
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	86.56
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	86.49
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	86.37
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	86.3
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	86.26
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	85.93
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	85.81
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	85.78
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	85.76
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	85.54
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	85.51
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	85.44
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	85.42
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	85.29
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	85.02
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	84.96
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	84.85
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	84.77
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	84.66
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	84.32
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	84.25
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	84.18
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	84.03
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	83.93
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	83.8
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	83.62
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	83.59
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	83.48
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	83.44
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	83.37
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	83.28
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	82.95
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	82.89
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	82.87
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	82.14
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	82.01
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	81.9
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	81.9
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	81.77
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	80.97
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	80.7
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	80.45
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	80.39
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	80.38

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=2.5e-40  Score=260.34  Aligned_cols=127  Identities=37%  Similarity=0.536  Sum_probs=113.4

Q ss_pred             CchhHHHHHHHHHHHHHhh------HHHhcCCCCCCccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC
Q 045521           46 LTDDVADAAIGLTLAVLRR------FVRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN  119 (204)
Q Consensus        46 ~~~~vAE~~l~~~L~~~R~------~~~~~~w~~~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~  119 (204)
                      |+.+||||++++||++.|+      .++++.|.+....+.++.|||+||+|+|+||+++|+++++|||+|++|+++..+.
T Consensus         1 N~~sVAE~~~~liL~~~R~i~~~~~~~~~~~W~~~~~~~~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~   80 (184)
T d1ygya1           1 NIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPA   80 (184)
T ss_dssp             SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGGCCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHH
T ss_pred             CchHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCccccccccccceeeeeccccchhHHHHHHhhhccceEEeecCCCChh
Confidence            5789999999999999999      5688999863345789999999999999999999999999999999999876431


Q ss_pred             C------CCC---------------------------------------------cceeCHHHHHHHHHcCCceEEEeeC
Q 045521          120 T------KYK---------------------------------------------GALVDESELVSALLEDRLAAAVLDV  148 (204)
Q Consensus       120 ~------~~~---------------------------------------------G~lvd~~aL~~aL~~g~i~ga~lDV  148 (204)
                      .      .+.                                             |++|||+||++||++|+|+||+|||
T Consensus        81 ~~~~~~~~~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~i~~a~lDV  160 (184)
T d1ygya1          81 RAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDV  160 (184)
T ss_dssp             HHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESS
T ss_pred             HHhhcCceeccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhcCcEeEEEEeC
Confidence            1      000                                             9999999999999999999999999


Q ss_pred             CCCCCCCCCCcCCCCceEEcccCC
Q 045521          149 FEHEPQVPEELFGLENVVLLPHAA  172 (204)
Q Consensus       149 ~~~EP~~~~~l~~~~nvilTPH~a  172 (204)
                      |++||++++|||++|||++|||+|
T Consensus       161 ~~~EP~~~~~l~~~~nviiTPHIG  184 (184)
T d1ygya1         161 FATEPCTDSPLFELAQVVVTPHLG  184 (184)
T ss_dssp             CSSSSCSCCGGGGCTTEEECSSCS
T ss_pred             CCCCCCCCchHhcCCCEEECCCCC
Confidence            999999878999999999999997

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=100.00  E-value=3.7e-39  Score=255.29  Aligned_cols=126  Identities=37%  Similarity=0.511  Sum_probs=111.0

Q ss_pred             hhHHHHHHHHHHHHHhh------HHHhcCCCCC-------CccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcC
Q 045521           48 DDVADAAIGLTLAVLRR------FVRSEDGEMG-------YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR  114 (204)
Q Consensus        48 ~~vAE~~l~~~L~~~R~------~~~~~~w~~~-------~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r  114 (204)
                      ++|||+++++||++.|+      .+++|.|.+.       ...+.+|+||||||||+|+||+++|+++++|||+|++|++
T Consensus         1 e~VAE~ai~liL~l~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~   80 (193)
T d1mx3a1           1 EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDP   80 (193)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECT
T ss_pred             CcHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccccccccCceeeeCceEEEeccccccccceeeeeccccceeeccC
Confidence            58999999999999999      5788999752       1347899999999999999999999999999999999998


Q ss_pred             CCCCCCC-------CC---------------------------------------------cceeCHHHHHHHHHcCCce
Q 045521          115 AEKPNTK-------YK---------------------------------------------GALVDESELVSALLEDRLA  142 (204)
Q Consensus       115 ~~~~~~~-------~~---------------------------------------------G~lvd~~aL~~aL~~g~i~  142 (204)
                      +......       +.                                             |++|||+||+++|++|+|+
T Consensus        81 ~~~~~~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~  160 (193)
T d1mx3a1          81 YLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIR  160 (193)
T ss_dssp             TSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEE
T ss_pred             cccccchhhhccccccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHHcCCce
Confidence            7543210       00                                             9999999999999999999


Q ss_pred             EEEeeCCCCCCCCC--CCcCCCCceEEcccCCC
Q 045521          143 AAVLDVFEHEPQVP--EELFGLENVVLLPHAAS  173 (204)
Q Consensus       143 ga~lDV~~~EP~~~--~~l~~~~nvilTPH~a~  173 (204)
                      ||++|||++||++.  +|||++|||++|||+|+
T Consensus       161 ~a~lDV~~~EP~~~~~~~l~~~~nvi~TPHiA~  193 (193)
T d1mx3a1         161 GAALDVHESEPFSFSQGPLKDAPNLICTPHAAW  193 (193)
T ss_dssp             EEEESCCSSSSCCTTSSTTTTCSSEEECSSCTT
T ss_pred             EEEEEcCCCCCCCCCchhHHcCCCEEEcCCcCc
Confidence            99999999999863  48999999999999986

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=100.00  E-value=9.4e-40  Score=260.01  Aligned_cols=128  Identities=29%  Similarity=0.426  Sum_probs=111.9

Q ss_pred             chhHHHHHHHHHHHHHhh------HHHhcCCCC-CCccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC
Q 045521           47 TDDVADAAIGLTLAVLRR------FVRSEDGEM-GYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN  119 (204)
Q Consensus        47 ~~~vAE~~l~~~L~~~R~------~~~~~~w~~-~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~  119 (204)
                      .++||||++++||++.|+      .+++|.|.+ ....+.+|.||||||||+|+||+++|++|++|||+|++||++....
T Consensus         2 p~aVAE~~l~~iL~l~R~~~~~~~~~~~g~w~~~~~~~~~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~   81 (199)
T d1dxya1           2 PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG   81 (199)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS
T ss_pred             ChHHHHHHHHHHHHHHhCHHHHHHHHHhCCCCcccCcccccccceeeeeeecccccccccccccccceeeeccCCccchh
Confidence            478999999999999999      468899975 3345789999999999999999999999999999999999876432


Q ss_pred             CC--C--C---------------------------------------------cceeCHHHHHHHHHcCCceEEEeeCCC
Q 045521          120 TK--Y--K---------------------------------------------GALVDESELVSALLEDRLAAAVLDVFE  150 (204)
Q Consensus       120 ~~--~--~---------------------------------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~  150 (204)
                      ..  +  .                                             |++|||+||+++|++|+|+||+||||+
T Consensus        82 ~~~~~~~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g~i~ga~lDV~~  161 (199)
T d1dxya1          82 DHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYE  161 (199)
T ss_dssp             CCTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCT
T ss_pred             hhcchhHHHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccHhhhhhHHHHHHHhcCCcceEeccccC
Confidence            11  0  0                                             999999999999999999999999999


Q ss_pred             CCCCC----------C----CCcCCCCceEEcccCCCC
Q 045521          151 HEPQV----------P----EELFGLENVVLLPHAASG  174 (204)
Q Consensus       151 ~EP~~----------~----~~l~~~~nvilTPH~a~~  174 (204)
                      +||++          .    ++||++|||++|||+||+
T Consensus       162 ~EP~~~~~~~~~~~~~~p~~~~L~~~~nviiTPHiagy  199 (199)
T d1dxya1         162 YETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYY  199 (199)
T ss_dssp             THHHHHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTC
T ss_pred             CCCcchhhccccccccChhhHHHhcCCCEEECCccccC
Confidence            99952          1    368899999999999986

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=100.00  E-value=6.3e-39  Score=253.65  Aligned_cols=128  Identities=36%  Similarity=0.511  Sum_probs=112.3

Q ss_pred             chhHHHHHHHHHHHHHhh------HHHhcCCCC---CCccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           47 TDDVADAAIGLTLAVLRR------FVRSEDGEM---GYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        47 ~~~vAE~~l~~~L~~~R~------~~~~~~w~~---~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      +.+|||+++++||++.|+      .+++|.|.+   ....+.+++|||+||||+|+||+++|+++++|||+|.+|+++..
T Consensus         2 t~AvAE~ai~liL~~~R~i~~~~~~~r~g~w~~~~~~~~~~~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   81 (191)
T d1gdha1           2 TVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRA   81 (191)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCC
T ss_pred             CHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCccccccceecccceEEeecccchHHHHHHHHhhcccccccccccc
Confidence            468999999999999999      578899973   22347899999999999999999999999999999999998654


Q ss_pred             CCC-----------CCC------------------------------------------cceeCHHHHHHHHHcCCceEE
Q 045521          118 PNT-----------KYK------------------------------------------GALVDESELVSALLEDRLAAA  144 (204)
Q Consensus       118 ~~~-----------~~~------------------------------------------G~lvd~~aL~~aL~~g~i~ga  144 (204)
                      ...           .+.                                          |++|||+||+++|++|+|+||
T Consensus        82 ~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g~i~~a  161 (191)
T d1gdha1          82 SSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYA  161 (191)
T ss_dssp             CHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEE
T ss_pred             ccchhhcccccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhhHHHHHHHHcCCceEE
Confidence            210           000                                          999999999999999999999


Q ss_pred             EeeCCCCCCCCCCCcCCCCceEEcccCCCC
Q 045521          145 VLDVFEHEPQVPEELFGLENVVLLPHAASG  174 (204)
Q Consensus       145 ~lDV~~~EP~~~~~l~~~~nvilTPH~a~~  174 (204)
                      +||||++||.+++|||++|||++|||+|+.
T Consensus       162 ~lDV~~~EP~~~~~l~~~~nvi~TPHiasa  191 (191)
T d1gdha1         162 GFDVFAGEPNINEGYYDLPNTFLFPHIGSA  191 (191)
T ss_dssp             EESCCTTTTSCCTTGGGCTTEEECSSCTTC
T ss_pred             EEECCCCCCCCCchHHcCCCEEECCccccC
Confidence            999999999777799999999999999974

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.1e-38  Score=246.70  Aligned_cols=128  Identities=32%  Similarity=0.457  Sum_probs=104.2

Q ss_pred             CchhHHHHHHHHHHHHHhh------HHHhcCCCCCCccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC
Q 045521           46 LTDDVADAAIGLTLAVLRR------FVRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN  119 (204)
Q Consensus        46 ~~~~vAE~~l~~~L~~~R~------~~~~~~w~~~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~  119 (204)
                      |+++||||+++++|++.|+      .++++.|.+....+.+|+|++|||+|+|+||+++|+++++|||+|++|++..+..
T Consensus         1 Na~aVAE~~l~~il~l~R~~~~~~~~~~~~~w~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~   80 (188)
T d1sc6a1           1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP   80 (188)
T ss_dssp             THHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC
T ss_pred             CCHHHHHHHHHHHHHHHhChHHHHHHHHhCCCcccccccccccceEEEEeecccchhhhhhhcccccceEeeccccccch
Confidence            6789999999999999999      4678899863345678999999999999999999999999999999999876532


Q ss_pred             CCC----C---------------------------------------------cceeCHHHHHHHHHcCCceEEEeeCCC
Q 045521          120 TKY----K---------------------------------------------GALVDESELVSALLEDRLAAAVLDVFE  150 (204)
Q Consensus       120 ~~~----~---------------------------------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~  150 (204)
                      ...    .                                             |++||++||+++|++|+++||+||||+
T Consensus        81 ~~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~~~~a~lDV~~  160 (188)
T d1sc6a1          81 LGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFP  160 (188)
T ss_dssp             CTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC--
T ss_pred             hhhhhhhhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCCceEEEEecCC
Confidence            210    0                                             999999999999999999999999999


Q ss_pred             CCCCCC-----CCcCCCCceEEcccCCC
Q 045521          151 HEPQVP-----EELFGLENVVLLPHAAS  173 (204)
Q Consensus       151 ~EP~~~-----~~l~~~~nvilTPH~a~  173 (204)
                      +||...     +|||++|||++|||+||
T Consensus       161 ~EP~~~~~~~~~~l~~~~nv~~TPHiaG  188 (188)
T d1sc6a1         161 TEPATNSDPFTSPLAEFDNVLLTPHIGG  188 (188)
T ss_dssp             -------CTTTGGGTTCTTEEEECCCSC
T ss_pred             CCCCCcCCccchhHhcCCCEEEcCCcCc
Confidence            999732     38999999999999997

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=100.00  E-value=1.6e-38  Score=252.38  Aligned_cols=126  Identities=25%  Similarity=0.393  Sum_probs=107.4

Q ss_pred             hhHHHHHHHHHHHHHhh------HHHhcCCCCCCccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCC
Q 045521           48 DDVADAAIGLTLAVLRR------FVRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTK  121 (204)
Q Consensus        48 ~~vAE~~l~~~L~~~R~------~~~~~~w~~~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~  121 (204)
                      ++||||+++++|+++|+      .++++.|......+++|+||||||||||+||+++|+++++|||+|++||+..++...
T Consensus         2 ~aVAE~~l~~~l~l~r~~~~~~~~~~~~~~~w~~~~g~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~   81 (197)
T d1j4aa1           2 NAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELE   81 (197)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHH
T ss_pred             CHHHHHHHHHHHHHHhCcHHHHHHHHhCCCCcCCCcCccccCCeEEEecccccchhHHHhHhhhcccccccCcccccccc
Confidence            68999999999999999      356776653234588999999999999999999999999999999999987643100


Q ss_pred             ---CC-----------------------------------------------cceeCHHHHHHHHHcCCceEEEeeCCCC
Q 045521          122 ---YK-----------------------------------------------GALVDESELVSALLEDRLAAAVLDVFEH  151 (204)
Q Consensus       122 ---~~-----------------------------------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~  151 (204)
                         +.                                               |++|||+||+++|++|+|+||+||||++
T Consensus        82 ~~~~~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lDV~~~  161 (197)
T d1j4aa1          82 KKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEG  161 (197)
T ss_dssp             HTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTT
T ss_pred             cceeeeccccccccccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHhcccchheeeecccc
Confidence               00                                               9999999999999999999999999999


Q ss_pred             CCCCC--------------CCcCCCCceEEcccCCC
Q 045521          152 EPQVP--------------EELFGLENVVLLPHAAS  173 (204)
Q Consensus       152 EP~~~--------------~~l~~~~nvilTPH~a~  173 (204)
                      ||...              +|||++|||++|||+|+
T Consensus       162 Ep~~~~~~~~~~~~p~~~~~~L~~~~nviiTPHiA~  197 (197)
T d1j4aa1         162 EVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAF  197 (197)
T ss_dssp             CTTTTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTT
T ss_pred             CCcccccccccccCCccchhhhhcCCCEEeCcccCc
Confidence            97421              25889999999999986

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=100.00  E-value=3.7e-38  Score=248.64  Aligned_cols=125  Identities=25%  Similarity=0.406  Sum_probs=110.4

Q ss_pred             hHHHHHHHHHHHHHhh------HHHhcCCCC--CCccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCC
Q 045521           49 DVADAAIGLTLAVLRR------FVRSEDGEM--GYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNT  120 (204)
Q Consensus        49 ~vAE~~l~~~L~~~R~------~~~~~~w~~--~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~  120 (204)
                      +||||+++++|++.|+      .+++|.|.+  ....+.+|+|++|||+|+|+||+++|+++++|||+|.++++...+..
T Consensus         2 sVAE~~l~~iL~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~   81 (188)
T d2naca1           2 SVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPES   81 (188)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHH
T ss_pred             cHHHHHHHHHHHHHhCHHHHHHHHHhCCCCCcccCCcceeccccceeeccccccchhhhhhhhccCceEEEEeecccccc
Confidence            7999999999999999      578899974  22346789999999999999999999999999999999998653210


Q ss_pred             -----C---C----------C-----------------------------------cceeCHHHHHHHHHcCCceEEEee
Q 045521          121 -----K---Y----------K-----------------------------------GALVDESELVSALLEDRLAAAVLD  147 (204)
Q Consensus       121 -----~---~----------~-----------------------------------G~lvd~~aL~~aL~~g~i~ga~lD  147 (204)
                           .   +          +                                   |++||++||+++|++|+++||+||
T Consensus        82 ~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i~ga~lD  161 (188)
T d2naca1          82 VEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGD  161 (188)
T ss_dssp             HHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEES
T ss_pred             ccccccccccCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCCceeEEEe
Confidence                 0   0          0                                   999999999999999999999999


Q ss_pred             CCCCCCCCCC-CcCCCCceEEcccCCC
Q 045521          148 VFEHEPQVPE-ELFGLENVVLLPHAAS  173 (204)
Q Consensus       148 V~~~EP~~~~-~l~~~~nvilTPH~a~  173 (204)
                      ||++||++.+ |||++||+++|||+||
T Consensus       162 V~~~EP~~~~~~l~~~~nv~~TPHiaG  188 (188)
T d2naca1         162 VWFPQPAPKDHPWRTMPYNGMTPHISG  188 (188)
T ss_dssp             CCSSSSCCTTCGGGTSTTBCCCCSCTT
T ss_pred             CCCCCCCCCCChHHcCCCeEEccccCc
Confidence            9999998865 9999999999999997

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=100.00  E-value=5.5e-37  Score=240.54  Aligned_cols=126  Identities=29%  Similarity=0.378  Sum_probs=109.2

Q ss_pred             chhHHHHHHHHHHHHHhh------HHHhcCCCCCCccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCC
Q 045521           47 TDDVADAAIGLTLAVLRR------FVRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNT  120 (204)
Q Consensus        47 ~~~vAE~~l~~~L~~~R~------~~~~~~w~~~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~  120 (204)
                      |++||||+++++|++.|+      .++++.|.+... ..+|.||||||||+|+||+++|+++++|||+|++|+|+++...
T Consensus         1 A~aVAE~~~~liL~~~R~i~~~~~~~~~~~w~~~~~-~~~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~~~   79 (181)
T d1qp8a1           1 ADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVE-IPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEGP   79 (181)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCSC-CCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCSS
T ss_pred             CchHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCC-CCcccCceEEEeccccccccceeeeeccccccccccccccccc
Confidence            579999999999999999      578899986222 3469999999999999999999999999999999999765421


Q ss_pred             C-C-C---------------------------------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCC
Q 045521          121 K-Y-K---------------------------------------------GALVDESELVSALLEDRLAAAVLDVFEHEP  153 (204)
Q Consensus       121 ~-~-~---------------------------------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP  153 (204)
                      . + .                                             |++||++||+++|++|++.+|++|||+.||
T Consensus        80 ~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~~aalDV~~~e~  159 (181)
T d1qp8a1          80 WRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRN  159 (181)
T ss_dssp             SCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTT
T ss_pred             eeeeechhhhhhccchhhcccccccccccccccceeeeccccceEEeccccccccchhhhhhcccCcEEEEEEecCCCCC
Confidence            1 0 0                                             999999999999999999999999998664


Q ss_pred             -CCCC-CcCCCCceEEcccCCC
Q 045521          154 -QVPE-ELFGLENVVLLPHAAS  173 (204)
Q Consensus       154 -~~~~-~l~~~~nvilTPH~a~  173 (204)
                       ++.+ ||+++|||++|||+||
T Consensus       160 p~~~~~~l~~~~nvi~TPHiaG  181 (181)
T d1qp8a1         160 DFAKDAEFFSLPNVVATPWVAG  181 (181)
T ss_dssp             CCGGGHHHHTSTTEEECCSCSS
T ss_pred             CCCCCChHHcCCCEEeccccCc
Confidence             4444 8999999999999997

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.88  E-value=3.2e-25  Score=162.33  Aligned_cols=84  Identities=18%  Similarity=0.243  Sum_probs=78.7

Q ss_pred             CCCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhhHHHhcCCCCCCccccc
Q 045521            1 VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTK   80 (204)
Q Consensus         1 t~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~w~~~~~~~~~   80 (204)
                      ++++++.++++|+||||++.|+|+||+|++.++ ++|.|+|++|+++.+||||++++||++.|+                
T Consensus        38 ~~~~~~~l~~~~~Lk~i~~~~aG~D~i~~~~~~-~~i~v~n~~g~~~~~vae~~~~~il~~~r~----------------  100 (121)
T d1qp8a2          38 SRITAEELAKMPRLKFIQVVTAGLDHLPWESIP-PHVTVAGNAGSNGYGNERVWRQMVMEAVRN----------------  100 (121)
T ss_dssp             SCCCHHHHHHCTTCCCEEBSSSCCTTSCCTTSC-TTSCEECCCSSSSSSCHHHHHHHHHHHHHH----------------
T ss_pred             eccCHHHHhcCCCceEEEecccCcCCCCHHHhc-cCeEEEECCCCChHHHHHHHHHHHHHhcCC----------------
Confidence            478999999999999999999999999999984 699999999999999999999999999973                


Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcC
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFG  106 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg  106 (204)
                           ++|+|+|+||+++|+++++||
T Consensus       101 -----l~i~G~G~iG~~iA~r~~a~G  121 (121)
T d1qp8a2         101 -----LITYATGGRPRNIAKREDYIG  121 (121)
T ss_dssp             -----HHHHHTTSCCSCBCCGGGTC-
T ss_pred             -----EEEEcCCHHHHHHHHHHHhcC
Confidence                 589999999999999999998

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.82  E-value=1.2e-20  Score=139.38  Aligned_cols=73  Identities=29%  Similarity=0.412  Sum_probs=69.1

Q ss_pred             CCCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhhHHHhcCCCC
Q 045521            1 VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRSEDGEM   73 (204)
Q Consensus         1 t~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~w~~   73 (204)
                      +++++++++++|+||+|+++|+|+||||+++|+++||.|+|+||+++.+||||++++||+++|+....++|-+
T Consensus        52 ~~i~~~~l~~~p~Lk~I~~~g~G~d~IDl~~~~~~gI~V~n~p~~~~~~VAE~~~~l~L~l~R~i~~a~~~vr  124 (130)
T d1ygya2          52 TTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEFVP  124 (130)
T ss_dssp             SCBCHHHHHTCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTSSCBHHHHHHHHHHHHHHHHHHHTTCCCT
T ss_pred             ccchHHHHhhcccceEEeeecccccchhHHHHHHCCceEEecCCCCcHHHHHHHHHHHHHHHhhHHHHhhhcc
Confidence            4789999999999999999999999999999999999999999999999999999999999999777777764

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=99.76  E-value=5.3e-19  Score=130.72  Aligned_cols=72  Identities=21%  Similarity=0.275  Sum_probs=67.0

Q ss_pred             CCCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh--HHHhcCCCC
Q 045521            1 VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR--FVRSEDGEM   73 (204)
Q Consensus         1 t~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~--~~~~~~w~~   73 (204)
                      +++++++|+++|+||+|+++|+|+||||+++|+++||.|+|+||+++ ++|||+++++|++.|+  ...+|.|.+
T Consensus        53 ~~i~~~~l~~~~~Lk~I~~~g~G~d~iD~~~~~~~gI~v~n~p~~~~-~vAE~a~~lil~~~R~i~~a~~g~~~~  126 (133)
T d1mx3a2          53 ITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASV-YSEQASIEMREEAAREIRRAITGRIPD  126 (133)
T ss_dssp             SCBCHHHHTTCSSCCEEEESSSCCTTBCHHHHHHTTCEEECCCSTTH-CCHHHHHHHHHHHHHHHHHHHHSCTTT
T ss_pred             CCcCHHHHhhCCCCeEEEEcCCCcccEeeeeheeCCEEEEcCCCCCc-hhHHHHHHHHHHHHhhHHHHHhccccc
Confidence            57999999999999999999999999999999999999999999987 4799999999999999  456788875

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.74  E-value=6.4e-19  Score=130.04  Aligned_cols=66  Identities=17%  Similarity=0.261  Sum_probs=62.1

Q ss_pred             CCCCHHHHhcCC--CceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhhHH
Q 045521            1 VGADAELIDSLP--KLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFV   66 (204)
Q Consensus         1 t~i~~~~l~~~~--~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~   66 (204)
                      +++++++|+++|  +||+|+++|+|+||||+++|+++||+|+|+|++++++||||+++++|++.|+..
T Consensus        54 ~~~~~~vl~~l~~~~Lk~I~~~~vG~d~ID~~~a~~~gI~V~n~P~~~~~aVAE~~~~~~l~l~R~l~  121 (131)
T d1dxya2          54 TPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLT  121 (131)
T ss_dssp             SCBCHHHHHHHHHTTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHhhcccCCeEEEEEcccccccccccccccceEEEEeCCCCCchhHHHHHHHHHHHHHcchH
Confidence            468999999866  799999999999999999999999999999999999999999999999999843

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=99.72  E-value=1.2e-18  Score=134.18  Aligned_cols=64  Identities=19%  Similarity=0.184  Sum_probs=59.9

Q ss_pred             CCCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHH--------HHHHHHHHhh
Q 045521            1 VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAA--------IGLTLAVLRR   64 (204)
Q Consensus         1 t~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~--------l~~~L~~~R~   64 (204)
                      +++++|+|+++|+||+|+++++|+||||+++|+++||.|+|+||+|+.+||||+        +++++...|+
T Consensus       101 ~~lt~e~i~~ap~LKlI~~~g~G~D~VDl~aa~e~gI~V~n~pg~n~~SVAEha~~~~~~~~i~~il~~~r~  172 (186)
T d2naca2         101 AYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSTTLTAQARYAAGTREILECFFEGRP  172 (186)
T ss_dssp             CCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTCEEEECTTTTHCSHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             cccCHHHHhcCccceEEEEeccCCccccHHHHHhCCCEEEECCCcCcHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            368999999999999999999999999999999999999999999999999999        6677777776

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=9.8e-18  Score=123.79  Aligned_cols=65  Identities=20%  Similarity=0.289  Sum_probs=59.2

Q ss_pred             CCCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhhH
Q 045521            1 VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRF   65 (204)
Q Consensus         1 t~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~   65 (204)
                      +++++++|+++|+||+|+++|+|+||||+++|+++||+|+|+||+++.+|||++++||++..|++
T Consensus        57 ~~i~~~~i~~~p~Lk~I~~~gvG~D~IDl~aa~~~gI~V~ntp~~~~~svAe~~~lml~~~~~~~  121 (132)
T d1sc6a2          57 THLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVAGKLIKY  121 (132)
T ss_dssp             CCBCHHHHHHCSSCCEEEECSSCCTTBCHHHHHHTTCCEECCTTTCSHHHHHHHHHHHHHHHHHH
T ss_pred             cccChhhhhccccceeEEEecccccccCHHHHHhCCCEEEECCCCchhHHHHHHHHHHHHHhhHH
Confidence            46899999999999999999999999999999999999999999999999999877776555553

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=99.67  E-value=3.5e-17  Score=120.35  Aligned_cols=62  Identities=34%  Similarity=0.500  Sum_probs=55.5

Q ss_pred             CCCCHHHHhcCC-CceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHH
Q 045521            1 VGADAELIDSLP-KLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVL   62 (204)
Q Consensus         1 t~i~~~~l~~~~-~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~   62 (204)
                      +++++++++++| +||+|+++|+|+||||+++|+++||+|+|+||+++++|||+++++|+.+.
T Consensus        54 ~~i~~~~l~~~~~~LK~I~~~gvG~d~ID~~~a~~~gI~V~ntpg~~~~aVAE~A~~~~~l~~  116 (129)
T d1gdha2          54 EKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLID  116 (129)
T ss_dssp             SCBCHHHHHHSCTTCCEEEEESSCCTTBCHHHHHHTTCEEECCCCSBHHHHHHHHHHHHHHHH
T ss_pred             chhhhHHHhhhhhcceeeeecccCCccccHHHHHhCCCEEEECCCCCchHHHHHHHHHHHHHH
Confidence            478999999997 79999999999999999999999999999999999999997665444444

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=99.63  E-value=9e-17  Score=118.84  Aligned_cols=61  Identities=26%  Similarity=0.341  Sum_probs=56.3

Q ss_pred             CCCCHHHHhcCC--CceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh
Q 045521            1 VGADAELIDSLP--KLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR   64 (204)
Q Consensus         1 t~i~~~~l~~~~--~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~   64 (204)
                      +++++++++++|  +||+|++.|+|+||||+++|+++||+|+|+|++   +||||++++||+++|+
T Consensus        55 ~~i~~eil~~l~~~~LK~I~~~~vG~d~ID~~aa~~~gI~V~N~P~~---svae~a~~~ml~l~r~  117 (134)
T d1j4aa2          55 LDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVY---SYTTHAVRNMVVKAFD  117 (134)
T ss_dssp             SCBCHHHHHHHHHTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCCS---CCBHHHHHHHHHHHHH
T ss_pred             CCcCHHHHhhhcccCeeEEEEccCCcCccCHHHHHhCCeEEEECCCC---cHHHHHHHHHHHHHHH
Confidence            468999999765  699999999999999999999999999999987   5799999999999998

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=1.3e-08  Score=76.39  Aligned_cols=39  Identities=21%  Similarity=0.378  Sum_probs=36.4

Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +..|.|||++|+|||.||+-+|+++++|||+|++++..+
T Consensus        19 ~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          19 DVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CceecCCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            456999999999999999999999999999999999865

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.07  E-value=6.2e-06  Score=66.88  Aligned_cols=85  Identities=15%  Similarity=0.307  Sum_probs=55.7

Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCC-ceEEEeeCCCCCCCCC
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDR-LAAAVLDVFEHEPQVP  156 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~-i~ga~lDV~~~EP~~~  156 (204)
                      ..+|.|+||.|-|||++|+.+|+.|...|++|++++.+....  |.-+=+|.++|.+...... +.    + +..++..+
T Consensus        31 ~~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i--~~~~Gld~~~L~~~~~~~~~~~----~-~~~~~~~~  103 (293)
T d1hwxa1          31 TPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSI--WNPDGIDPKELEDFKLQHGTIL----G-FPKAKIYE  103 (293)
T ss_dssp             CSSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEE--CCTTCCCHHHHHHHHHTTSSST----T-CTTSCBCC
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhh--ccccccchHHHHHHHHHcCCee----c-ccccccCC
Confidence            357999999999999999999999999999999887653100  0011267788888766532 22    1 22233334


Q ss_pred             CCcCCCCceEEcc
Q 045521          157 EELFGLENVVLLP  169 (204)
Q Consensus       157 ~~l~~~~nvilTP  169 (204)
                      +++|..|--|+.|
T Consensus       104 ~~~~~~~~DIliP  116 (293)
T d1hwxa1         104 GSILEVDCDILIP  116 (293)
T ss_dssp             SCGGGCCCSEEEE
T ss_pred             cccccCCccEEee
Confidence            4556555444444

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.05  E-value=2e-06  Score=57.98  Aligned_cols=78  Identities=23%  Similarity=0.164  Sum_probs=53.0

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCc
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEEL  159 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l  159 (204)
                      +++||+|.|+|+|..|+.+|+.|...|++|.++|....+...            +.++++..  .-+    .+ .....+
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~------------~~~~~~~~--~~~----~~-~~~~~~   62 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGL------------DKLPEAVE--RHT----GS-LNDEWL   62 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTG------------GGSCTTSC--EEE----SB-CCHHHH
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhH------------HHHhhccc--eee----cc-cchhhh
Confidence            579999999999999999999999999999999876543211            01111111  111    11 111235


Q ss_pred             CCCCceEEcccCCCCcH
Q 045521          160 FGLENVVLLPHAASGTE  176 (204)
Q Consensus       160 ~~~~nvilTPH~a~~t~  176 (204)
                      -+.+-+++||-+.-...
T Consensus        63 ~~~d~vi~SPGi~~~~~   79 (93)
T d2jfga1          63 MAADLIVASPGIALAHP   79 (93)
T ss_dssp             HHCSEEEECTTSCTTSH
T ss_pred             ccCCEEEECCCCCCCCH
Confidence            56789999999876554

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.93  E-value=3.6e-06  Score=58.68  Aligned_cols=55  Identities=15%  Similarity=0.116  Sum_probs=45.5

Q ss_pred             ccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCce
Q 045521           76 KLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLA  142 (204)
Q Consensus        76 ~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~  142 (204)
                      |...+|+||+|+|||.|.+|.+-++.|..+|++|+++++...            +++.+..+++++.
T Consensus         5 Pi~l~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~------------~~~~~~~~~~~i~   59 (113)
T d1pjqa1           5 PIFCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFI------------PQFTVWANEGMLT   59 (113)
T ss_dssp             EEEECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCC------------HHHHHHHTTTSCE
T ss_pred             ceEEEeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC------------hHHHHHHhcCCce
Confidence            445689999999999999999999999999999999987653            3555566667665

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=97.85  E-value=2.9e-05  Score=59.65  Aligned_cols=36  Identities=25%  Similarity=0.363  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      +|.||||.|.|||++|+.+|+.|..+|++|+++|..
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d   59 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTD   59 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecch
Confidence            599999999999999999999999999999988864

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=97.81  E-value=8.6e-06  Score=60.44  Aligned_cols=38  Identities=26%  Similarity=0.357  Sum_probs=35.0

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..|.||++.|+|||.+|+-+|++++++|++|+++...|
T Consensus        19 ~~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP   56 (163)
T d1v8ba1          19 FLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDP   56 (163)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             ceecCCEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence            35899999999999999999999999999999987755

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.78  E-value=2.4e-05  Score=61.48  Aligned_cols=60  Identities=20%  Similarity=0.209  Sum_probs=44.1

Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHH-hhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcC
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRA-EAFGCFISYRSRAEKPNTKYKGALVDESELVSALLED  139 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~-~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g  139 (204)
                      +.+++|+||.|-|||++|+.+|+.| +.+|++|++++.+....  |.-+=+|.++|.+..+..
T Consensus        26 ~~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i--~~~~Gld~~~l~~~~~~~   86 (234)
T d1b26a1          26 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGI--YNPEGFDVEELIRYKKEH   86 (234)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEE--ECTTCCCHHHHHHHHHHS
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcE--EeccccchHHHHHHHHhh
Confidence            4578999999999999999999999 57999999877543100  001126778887766654

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=97.73  E-value=5.8e-06  Score=65.94  Aligned_cols=87  Identities=21%  Similarity=0.390  Sum_probs=58.9

Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcce-----eCHHHHHHHHHc------CCceEEEe
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGAL-----VDESELVSALLE------DRLAAAVL  146 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~l-----vd~~aL~~aL~~------g~i~ga~l  146 (204)
                      +.+|.|+||.|-|||++|+.+|+.|...|++|++++.+.       |.+     +|.++|++.+.+      +.+..++ 
T Consensus        31 ~~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~-------G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~-  102 (255)
T d1bgva1          31 NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPD-------GYIYDPEGITTEEKINYMLEMRASGRNKVQDYA-  102 (255)
T ss_dssp             TCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETT-------EEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHH-
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-------ceEecCCCCCHHHHHHHHHHHhhhcCcchhhhh-
Confidence            346899999999999999999999999999998876543       333     455666665432      3333211 


Q ss_pred             eCCCCCCCCCCCcCCCCceEEcccCC
Q 045521          147 DVFEHEPQVPEELFGLENVVLLPHAA  172 (204)
Q Consensus       147 DV~~~EP~~~~~l~~~~nvilTPH~a  172 (204)
                      +-...++.+++.+|+.|--|+.|=--
T Consensus       103 ~~~~~~~~~~~~~~~~~~DiliPcA~  128 (255)
T d1bgva1         103 DKFGVQFFPGEKPWGQKVDIIMPCAT  128 (255)
T ss_dssp             HHHTCEEEETCCGGGSCCSEEECCSC
T ss_pred             hhcCceeechhhcccccccEEeeccc
Confidence            22223444455677777777777533

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.72  E-value=4e-05  Score=56.41  Aligned_cols=33  Identities=27%  Similarity=0.236  Sum_probs=28.9

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcC--CEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFG--CFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg--~~V~~~~r~~  116 (204)
                      |+|+|||+|.||..+|+.|+..|  .+|++||++.
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            57999999999999999998766  4799999864

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.71  E-value=1.9e-05  Score=62.22  Aligned_cols=78  Identities=22%  Similarity=0.254  Sum_probs=50.7

Q ss_pred             chhHHHHHHHHHHHHHhhHHHhcCCCCCCccc-cccCCCEEEEEeCChHHHHHHHHH-hhcCCEEEEEcCCCCCCCCCCc
Q 045521           47 TDDVADAAIGLTLAVLRRFVRSEDGEMGYKLT-TKISGRSVGIIGLGRIGMAVAKRA-EAFGCFISYRSRAEKPNTKYKG  124 (204)
Q Consensus        47 ~~~vAE~~l~~~L~~~R~~~~~~~w~~~~~~~-~~l~g~tvGIvG~G~IG~~va~~~-~~fg~~V~~~~r~~~~~~~~~G  124 (204)
                      .++++--++..+...++.            .+ ..|.|+||.|-|||++|+.+|++| +.+|++|++++.+...  -|.-
T Consensus         7 ~eATg~Gv~~~~~~~~~~------------~g~~~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~--i~~~   72 (239)
T d1gtma1           7 IEATARGASYTIREAAKV------------LGWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGG--IYNP   72 (239)
T ss_dssp             TTHHHHHHHHHHHHHHHH------------TTCSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCE--EEEE
T ss_pred             cchhhHHHHHHHHHHHHH------------hCCCCcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccc--eecC
Confidence            455565555555444442            12 249999999999999999999988 4799999887654310  0001


Q ss_pred             ceeCHHHHHHHHHc
Q 045521          125 ALVDESELVSALLE  138 (204)
Q Consensus       125 ~lvd~~aL~~aL~~  138 (204)
                      .=+|.++|++...+
T Consensus        73 ~G~d~~~l~~~~~~   86 (239)
T d1gtma1          73 DGLNADEVLKWKNE   86 (239)
T ss_dssp             EEECHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHh
Confidence            12566677665443

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=97.54  E-value=9.9e-05  Score=58.09  Aligned_cols=38  Identities=29%  Similarity=0.393  Sum_probs=34.6

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+|.|+||.|-|||++|+.+|++|...|++|++++.+.
T Consensus        27 ~~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~   64 (242)
T d1v9la1          27 GGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDIN   64 (242)
T ss_dssp             SCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeeccc
Confidence            46999999999999999999999999999999877653

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.48  E-value=9e-05  Score=48.17  Aligned_cols=35  Identities=20%  Similarity=0.401  Sum_probs=32.4

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKP  118 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~  118 (204)
                      |||||+|-|..|+.++.-++.+|.++..+++....
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~   36 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence            79999999999999999999999999999987643

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.45  E-value=7.3e-05  Score=54.82  Aligned_cols=33  Identities=30%  Similarity=0.529  Sum_probs=30.8

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|||||+|.+|+.+|+.++.-|.+|.+|||+.
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            479999999999999999999999999999864

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=0.00019  Score=49.69  Aligned_cols=59  Identities=17%  Similarity=0.202  Sum_probs=47.2

Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCC-C-----CcceeCHHHHHHHHHcC
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTK-Y-----KGALVDESELVSALLED  139 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~-~-----~G~lvd~~aL~~aL~~g  139 (204)
                      ..+.||||+|-|..|+.++.-++.+|.+++++|+++..... +     .|..=|.++|.+..++-
T Consensus         9 ~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~PA~~va~~~i~~~~~d~~~l~~~~~~~   73 (111)
T d1kjqa2           9 PAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALRRVVELE   73 (111)
T ss_dssp             TTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCGGGGGSSEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCCchhhcCCeEEECCCCCHHHHHHHHHhh
Confidence            45678999999999999999999999999999987653221 1     16667899998877653

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.34  E-value=0.0001  Score=53.98  Aligned_cols=34  Identities=29%  Similarity=0.443  Sum_probs=31.4

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .+|||||+|.+|+.+|+.|..-|.+|.+|||++.
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~   34 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPE   34 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcc
Confidence            4799999999999999999999999999999764

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.29  E-value=0.00012  Score=53.62  Aligned_cols=34  Identities=21%  Similarity=0.427  Sum_probs=31.3

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      ++||+||+|.+|..+|+.|..-|.+|.+|||+.+
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~   35 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQS   35 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchh
Confidence            5799999999999999999999999999998753

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.27  E-value=0.00012  Score=54.33  Aligned_cols=35  Identities=17%  Similarity=0.319  Sum_probs=32.2

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .++|||||+|.+|..+|+.|..-|.+|.+|||++.
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~   36 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   36 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            46899999999999999999999999999999764

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=97.27  E-value=0.00019  Score=56.04  Aligned_cols=37  Identities=22%  Similarity=0.387  Sum_probs=34.5

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      .+|.|+||.|.|||++|+.+|+.|...|++|++.+.+
T Consensus        35 ~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~   71 (230)
T d1leha1          35 DSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVN   71 (230)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeeccc
Confidence            4699999999999999999999999999999988764

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.23  E-value=0.00025  Score=52.11  Aligned_cols=87  Identities=18%  Similarity=0.325  Sum_probs=58.7

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCCCCC-----------CCCC-------------------cceeC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAEKPN-----------TKYK-------------------GALVD  128 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~~~~-----------~~~~-------------------G~lvd  128 (204)
                      .+.++++.|||.|.+|+.+++.|...|. ++..++|+....           ..|.                   -.+++
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~atss~~~ii~  100 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAPHPVIH  100 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSSSCCBC
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecCCCCcccc
Confidence            5899999999999999999999999998 588899874321           0111                   34678


Q ss_pred             HHHHHHHHHcCCce--EEEeeCCCCCCCCCCCcCCCCceEE
Q 045521          129 ESELVSALLEDRLA--AAVLDVFEHEPQVPEELFGLENVVL  167 (204)
Q Consensus       129 ~~aL~~aL~~g~i~--ga~lDV~~~EP~~~~~l~~~~nvil  167 (204)
                      .+.+-.+++..+..  -..+|.--+. ..+..+.+.+++.+
T Consensus       101 ~~~i~~~~~~r~~~~~~~iiDlavPr-~vd~~v~~~~~v~l  140 (159)
T d1gpja2         101 VDDVREALRKRDRRSPILIIDIANPR-DVEEGVENIEDVEV  140 (159)
T ss_dssp             HHHHHHHHHHCSSCCCEEEEECCSSC-SBCTTGGGSTTEEE
T ss_pred             HhhhHHHHHhcccCCCeEEEeecCCC-CcChhhhccCCeEE
Confidence            87777777653321  1567864321 12224556677655

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.18  E-value=0.00016  Score=52.25  Aligned_cols=37  Identities=27%  Similarity=0.313  Sum_probs=33.4

Q ss_pred             cCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           81 ISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        81 l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      ..=++|+||| +|.+|+.+|+.|+.-|.+|.++|+...
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~   44 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   44 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc
Confidence            3457999999 999999999999999999999998764

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.17  E-value=0.00019  Score=50.61  Aligned_cols=33  Identities=27%  Similarity=0.448  Sum_probs=30.3

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      |++.|+|+|++|+.+|+.|...|.+|+.++..+
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~   33 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   33 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence            678999999999999999999999999998754

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.11  E-value=0.00019  Score=53.13  Aligned_cols=33  Identities=27%  Similarity=0.430  Sum_probs=30.8

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|||||+|.+|..+|+.|..-|.+|.+|||++
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~   34 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCH
Confidence            479999999999999999999999999999865

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.08  E-value=0.00031  Score=50.72  Aligned_cols=34  Identities=24%  Similarity=0.388  Sum_probs=30.6

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .+|||||+|++|+.+|+.|..-|.+|.++++.+.
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~   34 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRS   34 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCC
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchh
Confidence            4799999999999999999999999998887654

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.0011  Score=49.83  Aligned_cols=59  Identities=14%  Similarity=0.248  Sum_probs=48.2

Q ss_pred             CCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCCCC--------CcceeCHHHHHHHHHcCC
Q 045521           82 SGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNTKY--------KGALVDESELVSALLEDR  140 (204)
Q Consensus        82 ~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~--------~G~lvd~~aL~~aL~~g~  140 (204)
                      ..|+|.|+| .|.||+.+++.|..-|.+|..+.|++.+....        .|.+-|.++|.++++.-.
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d   69 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQD   69 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCC
Confidence            568999999 79999999999988899999998865432211        199999999999998654

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.93  E-value=0.0003  Score=50.75  Aligned_cols=42  Identities=19%  Similarity=0.384  Sum_probs=37.5

Q ss_pred             CccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           75 YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        75 ~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++...+|+||+|.|||-|.+|.+-++.+..+|++|+.+++..
T Consensus         5 lpl~~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~~   46 (150)
T d1kyqa1           5 LQLAHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (150)
T ss_dssp             EEEEECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             chhheeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            445678999999999999999999999999999999997653

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.90  E-value=0.00061  Score=49.97  Aligned_cols=34  Identities=21%  Similarity=0.214  Sum_probs=31.8

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .||+.|||.|.+|..+|..|...|.+|..|+|.+
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4899999999999999999999999999999864

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.87  E-value=0.00063  Score=49.81  Aligned_cols=36  Identities=36%  Similarity=0.545  Sum_probs=33.5

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .|.+|.|+|.|.||...++.++.+|++|+++++++.
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            589999999999999999999999999999988764

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.84  E-value=0.00054  Score=49.87  Aligned_cols=33  Identities=33%  Similarity=0.493  Sum_probs=30.7

Q ss_pred             CEEEEE-eCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGII-GLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIv-G~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +||+|+ |.|.||+++|+.|...|.+|..++|++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            479999 899999999999999999999999875

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.72  E-value=0.00081  Score=48.72  Aligned_cols=36  Identities=17%  Similarity=0.182  Sum_probs=33.0

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      ++|+|.|+|.|.+|+.+|+.|..-|.+|+.++|+..
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            479999999999999999999988999999999753

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.67  E-value=0.0013  Score=47.29  Aligned_cols=35  Identities=17%  Similarity=0.226  Sum_probs=31.8

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKP  118 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~  118 (204)
                      ++|+|+|.|.||+.+|..|..-|.+|..++|....
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~   35 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQP   35 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHH
Confidence            48999999999999999999999999999987653

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.66  E-value=0.00089  Score=47.02  Aligned_cols=33  Identities=27%  Similarity=0.328  Sum_probs=30.2

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|.|+|+|++|+.+++.|...|.+|+..+..+
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~   33 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   33 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence            479999999999999999999999999998754

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.0012  Score=49.63  Aligned_cols=33  Identities=30%  Similarity=0.450  Sum_probs=31.4

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      |+|+|||.|.+|+.+|..+...|.+|+.+|+++
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   37 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            799999999999999999999999999999875

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.55  E-value=0.0026  Score=44.14  Aligned_cols=38  Identities=18%  Similarity=0.281  Sum_probs=33.6

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTK  121 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~  121 (204)
                      |++.|||.|.||-++|..+..+|++|..+.+.++.-+.
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~   61 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS   61 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchh
Confidence            79999999999999999999999999998887665433

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.55  E-value=0.0024  Score=44.03  Aligned_cols=54  Identities=20%  Similarity=0.341  Sum_probs=40.7

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCH---HHHHHHHHcCCc
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDE---SELVSALLEDRL  141 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~---~aL~~aL~~g~i  141 (204)
                      -++|.|||-|.||-++|..++.+|.+|..+.|..+....     .|.   +.+.+.|++..+
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~~-----~d~~~~~~~~~~l~~~gV   78 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK-----FDESVINVLENDMKKNNI   78 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTT-----SCHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhcccccc-----ccHHHHHHHHHHHHhCCC
Confidence            479999999999999999999999999999887654322     232   234555665544

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.53  E-value=0.0025  Score=48.03  Aligned_cols=33  Identities=24%  Similarity=0.253  Sum_probs=30.3

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|+|||+|.+|..+|..+..-|.+|+++|...
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            479999999999999999999999999999753

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.45  E-value=0.0017  Score=46.90  Aligned_cols=33  Identities=21%  Similarity=0.322  Sum_probs=29.7

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|||||+|++|+++++.+..-|-+|..++|+.
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~   33 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSL   33 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence            479999999999999999988899999998864

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.45  E-value=0.0017  Score=47.38  Aligned_cols=36  Identities=31%  Similarity=0.569  Sum_probs=32.6

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .|.+|.|+|.|.||...+++++.+|++++..+++..
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~   65 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA   65 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccchhhccchh
Confidence            589999999999999999999999999988877554

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.43  E-value=0.002  Score=46.84  Aligned_cols=35  Identities=34%  Similarity=0.628  Sum_probs=32.4

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|.+|.|+|.|.||...+..++.+|++|++++++.
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            57899999999999999999999999999998764

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.41  E-value=0.0021  Score=47.95  Aligned_cols=39  Identities=18%  Similarity=0.264  Sum_probs=36.2

Q ss_pred             ccccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           78 TTKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +.+|+||++.|.| -|.||+++|+.+...|++|+..+|+.
T Consensus        18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             TSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            5689999999999 69999999999999999999998875

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.37  E-value=0.0011  Score=49.53  Aligned_cols=33  Identities=21%  Similarity=0.375  Sum_probs=30.8

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      |+|+|||.|.||+.+|..+...|++|..+|+..
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            589999999999999999999999999999865

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.0017  Score=50.62  Aligned_cols=64  Identities=19%  Similarity=0.193  Sum_probs=46.6

Q ss_pred             cccCCCEEEEEeCCh-HHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHc--CCceEEEeeCCCCC
Q 045521           79 TKISGRSVGIIGLGR-IGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLE--DRLAAAVLDVFEHE  152 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~-IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~--g~i~ga~lDV~~~E  152 (204)
                      ++|+||++.|-|.++ ||+++|+.+..-|++|+..+|+...          -+.+.+.+++  +++.+...||.+.|
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~----------l~~~~~~~~~~~~~~~~~~~Dvs~~~   69 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHG----------LEETAAKCKGLGAKVHTFVVDCSNRE   69 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH----------HHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH----------HHHHHHHHHhcCCcEEEEEeeCCCHH
Confidence            469999999999754 9999999999999999999986532          1233333332  34566667776554

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=96.31  E-value=0.0032  Score=46.08  Aligned_cols=35  Identities=26%  Similarity=0.276  Sum_probs=27.2

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhc-CCEEEE-EcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAF-GCFISY-RSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~f-g~~V~~-~~r~~  116 (204)
                      +..+|||+|+|.||+..++.++.. ++++.+ +++..
T Consensus         2 ~kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~   38 (170)
T d1f06a1           2 TNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRA   38 (170)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSS
T ss_pred             CcceEEEECChHHHHHHHHHHHhCCCcEEEEEEeccc
Confidence            345799999999999999999876 677654 45544

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.31  E-value=0.0021  Score=47.42  Aligned_cols=35  Identities=23%  Similarity=0.346  Sum_probs=32.0

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~  116 (204)
                      .|.+|.|+|.|.||...+..++.+|+ +|++.++++
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP   63 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred             CCCEEEEECCCccchhheeccccccccccccccccc
Confidence            58999999999999999999999998 788887754

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.29  E-value=0.0041  Score=42.49  Aligned_cols=54  Identities=19%  Similarity=0.268  Sum_probs=40.8

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHH---HHHHHHHcCCc
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDES---ELVSALLEDRL  141 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~---aL~~aL~~g~i  141 (204)
                      -+++.|||.|.||-++|..+..+|.+|..+.+..+-...     .|.+   .+.+.|++..+
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~-----~d~~~~~~l~~~l~~~GI   78 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-----FEKQMAAIIKKRLKKKGV   78 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-----SCHHHHHHHHHHHHHTTC
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEecceeccc-----ccchhHHHHHHHHHhcCC
Confidence            379999999999999999999999999988876654322     3432   35566666544

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=96.26  E-value=0.006  Score=41.67  Aligned_cols=59  Identities=14%  Similarity=0.100  Sum_probs=43.3

Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCc
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRL  141 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i  141 (204)
                      ..+|+|.|||-|.||-++|..|+.+|.+|..+.+.+.....++-.+  -+.+.+.|++..+
T Consensus        20 ~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~~~d~~~--~~~~~~~l~~~gI   78 (121)
T d1mo9a2          20 EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNET--RAYVLDRMKEQGM   78 (121)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTCCSHHH--HHHHHHHHHHTTC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhcccccch--hhhhhhhhhcccc
Confidence            4589999999999999999999999999999888765432221111  2455666766544

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.22  E-value=0.004  Score=48.20  Aligned_cols=37  Identities=22%  Similarity=0.186  Sum_probs=33.1

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|+||++.|-|- +.||+++|+.|..-|++|+..+|+.
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEE   39 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            489999999996 5699999999999999999988853

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.21  E-value=0.005  Score=45.78  Aligned_cols=32  Identities=9%  Similarity=0.201  Sum_probs=28.1

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|+|||+|.+|..+|..+ +.|.+|+++|...
T Consensus         1 MkI~ViGlG~vGl~~a~~~-a~g~~V~g~Din~   32 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLL-SLQNEVTIVDILP   32 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHH-TTTSEEEEECSCH
T ss_pred             CEEEEECCChhHHHHHHHH-HCCCcEEEEECCH
Confidence            4799999999999999877 4799999999764

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.21  E-value=0.0032  Score=45.55  Aligned_cols=35  Identities=26%  Similarity=0.442  Sum_probs=32.6

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|.+|.|+|.|.||...+..+|.+|++|+..++++
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            58899999999999999999999999999998765

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.18  E-value=0.0056  Score=41.85  Aligned_cols=36  Identities=19%  Similarity=0.348  Sum_probs=32.6

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN  119 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~  119 (204)
                      |++.|||-|.||-++|..++.+|.+|..+.+.++..
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l   57 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPL   57 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecchhh
Confidence            689999999999999999999999999998876543

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.18  E-value=0.0051  Score=42.32  Aligned_cols=54  Identities=26%  Similarity=0.351  Sum_probs=40.4

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHH---HHHHHHHcCCc
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDES---ELVSALLEDRL  141 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~---aL~~aL~~g~i  141 (204)
                      -+++.|||-|.||-++|..++.+|++|..+.+..+..+.     .|++   .+.+.|++..+
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~-----~d~ei~~~l~~~l~~~Gv   78 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA-----VDEQVAKEAQKILTKQGL   78 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-----SCHHHHHHHHHHHHHTTE
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCc-----ccchhHHHHHHHHHhcCc
Confidence            388999999999999999999999999888776554333     2333   35666655444

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.0055  Score=42.50  Aligned_cols=36  Identities=28%  Similarity=0.264  Sum_probs=32.8

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN  119 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~  119 (204)
                      |++.|||-|.||-++|..++.+|.+|..+.|..+..
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l   58 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL   58 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccc
Confidence            799999999999999999999999999998876543

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.17  E-value=0.0034  Score=43.52  Aligned_cols=54  Identities=17%  Similarity=0.260  Sum_probs=41.1

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHH---HHHHHHHcCCc
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDES---ELVSALLEDRL  141 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~---aL~~aL~~g~i  141 (204)
                      -+++.|||.|-||-++|..+..+|++|..+.|.+.....     .|.+   .|.+.|++..+
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~-----~d~~~~~~l~~~l~~~GI   81 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT-----MDAEIRKQFQRSLEKQGM   81 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-----SCHHHHHHHHHHHHHSSC
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCch-----hhhcchhhhhhhhhcccc
Confidence            479999999999999999999999999999887665433     2332   34566665433

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=96.17  E-value=0.0029  Score=45.35  Aligned_cols=33  Identities=27%  Similarity=0.240  Sum_probs=27.7

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcC-CEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFG-CFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg-~~V~~~~r~~  116 (204)
                      .+||+||+|++|+++++.+..-| -+|..++|++
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~   34 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence            47999999999999999765444 7899999875

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=96.13  E-value=0.0027  Score=49.71  Aligned_cols=64  Identities=25%  Similarity=0.284  Sum_probs=45.3

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHc--CCceEEEeeCCCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLE--DRLAAAVLDVFEHE  152 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~--g~i~ga~lDV~~~E  152 (204)
                      +.|+||++.|-|- +.||+++|+.|..-|++|+..+|+...          .+.+.+.+++  ++......||.+.|
T Consensus         1 krL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~----------l~~~~~~~~~~g~~~~~~~~Dv~~~~   67 (260)
T d1zema1           1 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREA----------LEKAEASVREKGVEARSYVCDVTSEE   67 (260)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH----------HHHHHHHHHTTTSCEEEEECCTTCHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH----------HHHHHHHHHhcCCcEEEEEccCCCHH
Confidence            3589999999996 569999999999999999998886421          1233333432  34555666766543

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=96.10  E-value=0.0039  Score=48.66  Aligned_cols=39  Identities=18%  Similarity=0.290  Sum_probs=34.5

Q ss_pred             cccCCCEEEEEeCC-hHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           79 TKISGRSVGIIGLG-RIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        79 ~~l~g~tvGIvG~G-~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .+|+||++.|-|-+ .||+++|+.|..-|++|+..+|+..
T Consensus         5 m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   44 (260)
T d1h5qa_           5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAA   44 (260)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCT
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            36899999999964 5999999999999999999888764

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.02  E-value=0.0053  Score=44.82  Aligned_cols=40  Identities=18%  Similarity=0.252  Sum_probs=36.1

Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      +..+.||+|.|+|.|..+++++--|...|++|..++|+..
T Consensus        13 ~~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~   52 (170)
T d1nyta1          13 SFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVS   52 (170)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHH
Confidence            4568999999999999999999999999999999999753

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=95.91  E-value=0.0039  Score=49.25  Aligned_cols=39  Identities=18%  Similarity=0.215  Sum_probs=35.6

Q ss_pred             ccccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           78 TTKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..+|+||++.|-| .|.||+++|+.|..-|++|+..+|+.
T Consensus        20 ~~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          20 PNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             TTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            3589999999999 68999999999999999999988864

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=95.90  E-value=0.0066  Score=46.84  Aligned_cols=37  Identities=24%  Similarity=0.335  Sum_probs=33.1

Q ss_pred             ccCCCEEEEEeCC-hHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGLG-RIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~G-~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|.||++.|.|-+ .||+++|+.|..-|++|+..+|+.
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREE   39 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4899999999965 599999999999999999888864

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.87  E-value=0.0031  Score=46.17  Aligned_cols=67  Identities=18%  Similarity=0.113  Sum_probs=44.4

Q ss_pred             CCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCCC---CC-cceeCHHHHHHHHHcCCceEEEeeC
Q 045521           82 SGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNTK---YK-GALVDESELVSALLEDRLAAAVLDV  148 (204)
Q Consensus        82 ~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~~---~~-G~lvd~~aL~~aL~~g~i~ga~lDV  148 (204)
                      .|++|.|.|. |.+|+...+.++.+|++|++.++++.....   .. -.++|..+..+.+.+++=.-+.+|+
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~   98 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEV   98 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEEC
T ss_pred             CCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhhccccccccccc
Confidence            6899999995 999999999999999999988776432210   10 2344444444455544433345554

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.86  E-value=0.0074  Score=46.70  Aligned_cols=38  Identities=24%  Similarity=0.483  Sum_probs=33.5

Q ss_pred             cccCCCEEEEEeCC---hHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGLG---RIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~G---~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+|+||++.|-|.+   .||+++|+.|..-|++|+..+|..
T Consensus         4 ~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~   44 (256)
T d1ulua_           4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE   44 (256)
T ss_dssp             ECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcH
Confidence            47999999999975   599999999999999998877764

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.0077  Score=46.55  Aligned_cols=37  Identities=27%  Similarity=0.337  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|+||++.|-|- +.||+++|+.|..-|++|+..+|+.
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~   41 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ   41 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            589999999995 6799999999999999999998864

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.79  E-value=0.0044  Score=42.94  Aligned_cols=56  Identities=9%  Similarity=0.132  Sum_probs=38.9

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCce
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLA  142 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~  142 (204)
                      +++.|||-|.||-++|..++.||.+|..+.++ +....++-++.  +.+.+.|++..+.
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~-~~l~~~D~~~~--~~l~~~l~~~Gv~   76 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRGFDQDMA--NKIGEHMEEHGIK   76 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-SSSTTSCHHHH--HHHHHHHHHTTEE
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEec-hhhccCCHHHH--HHHHHHHHHCCCE
Confidence            68999999999999999999999999877664 22222211111  3466667665443

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=95.78  E-value=0.009  Score=41.52  Aligned_cols=36  Identities=19%  Similarity=0.227  Sum_probs=32.7

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKP  118 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~  118 (204)
                      .+++.|||-|-||-++|..++.+|.+|..+.+.++-
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~i   61 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGL   61 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccc
Confidence            479999999999999999999999999999886644

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.0047  Score=48.18  Aligned_cols=38  Identities=26%  Similarity=0.256  Sum_probs=34.2

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..|+||++.|-|. +.||+++|+.|..-|++|+..+|..
T Consensus         6 ~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~   44 (257)
T d1xg5a_           6 ERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTV   44 (257)
T ss_dssp             GGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4599999999995 6899999999999999999988864

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=95.73  E-value=0.0097  Score=46.36  Aligned_cols=37  Identities=24%  Similarity=0.376  Sum_probs=34.2

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +|+||++.|.| .+.||+++|+.+..-|++|+..+|+.
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~   40 (258)
T d1ae1a_           3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE   40 (258)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            68999999999 67899999999999999999999865

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=95.70  E-value=0.008  Score=46.84  Aligned_cols=37  Identities=27%  Similarity=0.377  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEeCC-hHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGLG-RIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~G-~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +|+||++.|-|-+ .||+++|+.|..-|++|+..+|+.
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLD   39 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            5899999999964 699999999999999999888864

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.0073  Score=43.81  Aligned_cols=35  Identities=29%  Similarity=0.376  Sum_probs=31.6

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~  116 (204)
                      .|.+|.|+|.|.||...+..++.+|+ +|++.++++
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            47899999999999999999999999 788888754

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.67  E-value=0.0093  Score=45.90  Aligned_cols=57  Identities=25%  Similarity=0.283  Sum_probs=43.8

Q ss_pred             ccCCCEEEEEeCC-hHHHHHHHHHhhcCCEEEEEcCCCCCCCC---CCcceeCHHHHHHHH
Q 045521           80 KISGRSVGIIGLG-RIGMAVAKRAEAFGCFISYRSRAEKPNTK---YKGALVDESELVSAL  136 (204)
Q Consensus        80 ~l~g~tvGIvG~G-~IG~~va~~~~~fg~~V~~~~r~~~~~~~---~~G~lvd~~aL~~aL  136 (204)
                      .|.||++.|-|.+ .||+++|+.|..-|++|+..+|.......   +...+-|++++.+.+
T Consensus         4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~Dv~~~~~v~~~~   64 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVEVDVTDSDAVDRAF   64 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSEEEECCTTCHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhcCceEEEEecCCHHHHHHHH
Confidence            5899999999975 69999999999999999998887654332   226666766654443

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=95.64  E-value=0.0043  Score=45.79  Aligned_cols=30  Identities=27%  Similarity=0.280  Sum_probs=24.1

Q ss_pred             CEEEEEeCChHHHHHHHHHhhc-CCEEEEEc
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAF-GCFISYRS  113 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~f-g~~V~~~~  113 (204)
                      ++|||-|||+|||.+.|.+... .++|....
T Consensus         2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaIn   32 (171)
T d1cf2o1           2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVS   32 (171)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSSSEEEEEEE
T ss_pred             eEEEEEcCcHHHHHHHHHHHhCCCceEEEEe
Confidence            4899999999999999988644 46776543

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.63  E-value=0.011  Score=45.67  Aligned_cols=37  Identities=24%  Similarity=0.265  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +|+||++.|-|- +.||+++|+.|...|++|+..+|+.
T Consensus         2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   39 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            589999999996 5799999999999999999988863

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.015  Score=45.10  Aligned_cols=39  Identities=21%  Similarity=0.289  Sum_probs=34.8

Q ss_pred             ccccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           78 TTKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      |.+|.||++.|-|- +.||+++|+.|..-|++|+..+|+.
T Consensus         1 g~rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (250)
T d1ydea1           1 GTRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDE   40 (250)
T ss_dssp             CCTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            35799999999995 7899999999999999999988753

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=95.57  E-value=0.004  Score=48.26  Aligned_cols=62  Identities=19%  Similarity=0.204  Sum_probs=44.4

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCceEEEeeCCCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHE  152 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~ga~lDV~~~E  152 (204)
                      +|+||++.|-|- +.||+++|+.|..-|++|+..+|+...          .+++.+.+. ++......||.+.|
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~----------l~~~~~~~~-~~~~~~~~Dv~~~~   63 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENG----------AQAISDYLG-ANGKGLMLNVTDPA   63 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHH----------HHHHHHHHG-GGEEEEECCTTCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHH----------HHHHHHHhC-CCCcEEEEEecCHH
Confidence            478999999994 679999999999999999988886421          123344442 34455666776543

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.57  E-value=0.0083  Score=44.05  Aligned_cols=35  Identities=20%  Similarity=0.337  Sum_probs=30.8

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r~~  116 (204)
                      .|.+|.|+|.|.||...+..++.+|++ |+..+++.
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~   63 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDING   63 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccch
Confidence            689999999999999999999999995 66677654

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=95.55  E-value=0.012  Score=46.94  Aligned_cols=61  Identities=18%  Similarity=0.198  Sum_probs=48.7

Q ss_pred             cCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCCC----------C---CcceeCHHHHHHHHHcCCc
Q 045521           81 ISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNTK----------Y---KGALVDESELVSALLEDRL  141 (204)
Q Consensus        81 l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~----------~---~G~lvd~~aL~~aL~~g~i  141 (204)
                      .+||+|.|.| .|-||+.+++.|..-|.+|.+++|.......          .   .|.+-|.++|.++++...+
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~   80 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQP   80 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCC
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhhcccCCeEEEeeccChHhhhhhhhhchh
Confidence            4799999999 7899999999999999999999986543221          1   1777888888888876543

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=95.52  E-value=0.0065  Score=47.52  Aligned_cols=37  Identities=24%  Similarity=0.317  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|.||++.|-|- +.||+++|+.|..-|++|+..+|+.
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIAD   40 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            589999999995 6799999999999999999888754

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.50  E-value=0.014  Score=39.62  Aligned_cols=55  Identities=18%  Similarity=0.282  Sum_probs=40.2

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLED  139 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g  139 (204)
                      .+++.|||-|.||-++|..++.+|.+|..+.+.++.-..++.++  .+.+.+.|++.
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~~d~~~--~~~l~~~l~~~   75 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSEL--TAPVAESLKKL   75 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHH--HHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeeeccccccccchh--HHHHHHHHHhh
Confidence            48999999999999999999999999999988765433322211  23345555554

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.50  E-value=0.0053  Score=47.82  Aligned_cols=37  Identities=22%  Similarity=0.236  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|+||++.|-|- +.||+++|+.|..-|++|+..+|+.
T Consensus         2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (256)
T d1k2wa_           2 RLDGKTALITGSARGIGRAFAEAYVREGARVAIADINL   39 (256)
T ss_dssp             TTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            389999999996 7899999999999999999988753

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=95.45  E-value=0.0056  Score=43.98  Aligned_cols=31  Identities=26%  Similarity=0.274  Sum_probs=25.2

Q ss_pred             EEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +||+||+|++|+.+|+.|..-|..+. ++|+.
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~~-~~~~~   32 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTLV-WNRTF   32 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEEE-ECSST
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEEE-EeCCH
Confidence            69999999999999999987776654 55543

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.44  E-value=0.0096  Score=42.69  Aligned_cols=35  Identities=26%  Similarity=0.413  Sum_probs=32.2

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|++|.|.|.|.||...+..++.+|.+|++.+++.
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~   61 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD   61 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence            58999999999999999999999999999888754

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=95.43  E-value=0.0026  Score=42.48  Aligned_cols=77  Identities=19%  Similarity=0.176  Sum_probs=51.8

Q ss_pred             CCCEEEEEeCChHH-HHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCcC
Q 045521           82 SGRSVGIIGLGRIG-MAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELF  160 (204)
Q Consensus        82 ~g~tvGIvG~G~IG-~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l~  160 (204)
                      +.|++=+||.|.+| +.+|+.|+..|.+|.++|....+             ..+.|.+.-+.  ...-+..     ..+-
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~-------------~~~~L~~~Gi~--v~~g~~~-----~~i~   66 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGV-------------VTQRLAQAGAK--IYIGHAE-----EHIE   66 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSH-------------HHHHHHHTTCE--EEESCCG-----GGGT
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCCh-------------hhhHHHHCCCe--EEECCcc-----ccCC
Confidence            56899999999999 66699999999999999986432             22333332222  1111211     1234


Q ss_pred             CCCceEEcccCCCCcHHH
Q 045521          161 GLENVVLLPHAASGTEET  178 (204)
Q Consensus       161 ~~~nvilTPH~a~~t~~~  178 (204)
                      +.+-|++||++.....|.
T Consensus        67 ~~d~vV~S~AI~~~npel   84 (96)
T d1p3da1          67 GASVVVVSSAIKDDNPEL   84 (96)
T ss_dssp             TCSEEEECTTSCTTCHHH
T ss_pred             CCCEEEECCCcCCCCHHH
Confidence            557799999998776653

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=95.43  E-value=0.01  Score=46.16  Aligned_cols=37  Identities=19%  Similarity=0.320  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +|.||++.|-|- +.||+++|+.|..-|++|+..+|+.
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   42 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQ   42 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            689999999996 4699999999999999999988864

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.42  E-value=0.013  Score=40.32  Aligned_cols=38  Identities=24%  Similarity=0.306  Sum_probs=34.0

Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCC
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKP  118 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~  118 (204)
                      -.+|+|.|||-|-||-++|..+..+|.+|..+.+..+.
T Consensus        28 ~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~   65 (123)
T d1nhpa2          28 PEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP   65 (123)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             cCCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcc
Confidence            35789999999999999999999999999998876554

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.37  E-value=0.0048  Score=48.45  Aligned_cols=37  Identities=24%  Similarity=0.290  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +|+||++.|.|- +.||+++|+.|..-|++|+..+|+.
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~   39 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSS   39 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            589999999995 6799999999999999999988864

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.36  E-value=0.0085  Score=43.92  Aligned_cols=35  Identities=29%  Similarity=0.330  Sum_probs=31.8

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~  116 (204)
                      .|.+|.|+|.|.||...++.++.+|+ +|+..+++.
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~   62 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP   62 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence            58899999999999999999999998 688888765

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.34  E-value=0.0093  Score=46.50  Aligned_cols=38  Identities=26%  Similarity=0.383  Sum_probs=33.9

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..|+||++.|-|- +.||+++|+.|..-|++|+..+|+.
T Consensus         4 F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~   42 (259)
T d1xq1a_           4 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNE   42 (259)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3689999999996 5699999999999999999988864

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.34  E-value=0.0084  Score=46.52  Aligned_cols=38  Identities=18%  Similarity=0.094  Sum_probs=34.0

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..|.||++.|-|- +.||+++|+.|..-|++|+..+|+.
T Consensus         6 f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~   44 (251)
T d2c07a1           6 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQ   44 (251)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            4689999999996 6899999999999999999988864

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.33  E-value=0.0057  Score=47.66  Aligned_cols=62  Identities=16%  Similarity=0.244  Sum_probs=44.8

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHc--CCceEEEeeCCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLE--DRLAAAVLDVFEH  151 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~--g~i~ga~lDV~~~  151 (204)
                      .|+||++.|-|- +.||+++|+.|..-|++|+..+|+...          .+.+.+.+++  ++......||.+.
T Consensus         8 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~----------~~~~~~~l~~~g~~~~~~~~Dvs~~   72 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADA----------ANHVVDEIQQLGGQAFACRCDITSE   72 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHH----------HHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH----------HHHHHHHHHHcCCcEEEEEccCCCH
Confidence            589999999996 679999999999999999988876421          1233344432  4455566676654

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.30  E-value=0.0091  Score=44.26  Aligned_cols=29  Identities=24%  Similarity=0.217  Sum_probs=24.3

Q ss_pred             EEEEEeCChHHHHHHHHHhhc-CCEEEEEc
Q 045521           85 SVGIIGLGRIGMAVAKRAEAF-GCFISYRS  113 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~f-g~~V~~~~  113 (204)
                      +|||.|||+|||.++|.+..- +++|.++.
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaIn   32 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVA   32 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEE
Confidence            799999999999999999743 57877654

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=95.29  E-value=0.012  Score=45.82  Aligned_cols=38  Identities=21%  Similarity=0.268  Sum_probs=34.2

Q ss_pred             cccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++|+||++.|-| -+.||+++|+.|..-|++|+..+|+.
T Consensus         3 ~dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~   41 (261)
T d1geea_           3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSK   41 (261)
T ss_dssp             GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            479999999998 47899999999999999999888864

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.25  E-value=0.0081  Score=43.75  Aligned_cols=36  Identities=17%  Similarity=0.280  Sum_probs=31.8

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcCCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSRAEK  117 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r~~~  117 (204)
                      .+|+|.|||-|.+|-..|..|+..|++ |..+.+...
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            579999999999999999999999995 877777654

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.25  E-value=0.013  Score=46.63  Aligned_cols=38  Identities=24%  Similarity=0.261  Sum_probs=34.0

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..|+||++.|-|- +.||+++|+.|..-|++|+..+|+.
T Consensus         8 g~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~   46 (297)
T d1yxma1           8 GLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKL   46 (297)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4599999999995 5699999999999999999988864

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.23  E-value=0.011  Score=45.94  Aligned_cols=37  Identities=24%  Similarity=0.409  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +|+||++.|-|- +.||+++|+.|..-|++|+..+|+.
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~   39 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNL   39 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            689999999996 5699999999999999999988864

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=95.23  E-value=0.018  Score=44.37  Aligned_cols=37  Identities=24%  Similarity=0.263  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +|+||++.|-|- +.||+++|+.|..-|++|+..+|..
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~   39 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVP   39 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            589999999996 5699999999999999999888865

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.19  E-value=0.016  Score=39.81  Aligned_cols=56  Identities=16%  Similarity=0.178  Sum_probs=41.6

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCH---HHHHHHHHcCCc
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDE---SELVSALLEDRL  141 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~---~aL~~aL~~g~i  141 (204)
                      .++++.|||-|-||-++|..++..|.+|..+.+.+..-.    ...|+   +-+.+.|++.-+
T Consensus        29 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~----~~~~~~~~~~~~~~l~~~GV   87 (121)
T d1d7ya2          29 PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMS----RAAPATLADFVARYHAAQGV   87 (121)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT----TTSCHHHHHHHHHHHHTTTC
T ss_pred             cCCeEEEECcchhHHHHHHHhhcccceEEEEeecccccc----ccCCHHHHHHHHHHHHHCCc
Confidence            368999999999999999999999999999988765431    22343   234555655434

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=95.18  E-value=0.018  Score=42.34  Aligned_cols=64  Identities=20%  Similarity=0.286  Sum_probs=45.9

Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcCCCCCCCC-----------CC-----cceeCHHHHHHHHHcCC
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSRAEKPNTK-----------YK-----GALVDESELVSALLEDR  140 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r~~~~~~~-----------~~-----G~lvd~~aL~~aL~~g~  140 (204)
                      +.++++|+|.|+|.|..|++++..+...|++ +..++|+......           +.     ..+-|.+.+.+.+.+-.
T Consensus        13 ~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   92 (182)
T d1vi2a1          13 GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASAD   92 (182)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCS
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccc
Confidence            4578999999999999999999999999994 6777886543110           00     33446677777776544


Q ss_pred             c
Q 045521          141 L  141 (204)
Q Consensus       141 i  141 (204)
                      +
T Consensus        93 i   93 (182)
T d1vi2a1          93 I   93 (182)
T ss_dssp             E
T ss_pred             e
Confidence            3

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.16  E-value=0.016  Score=44.43  Aligned_cols=39  Identities=21%  Similarity=0.223  Sum_probs=34.6

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      +.|+||++.|-|. +.||+++|+.|..-|++|+..+|+..
T Consensus         1 ~slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~   40 (248)
T d2o23a1           1 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNS   40 (248)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            3699999999995 56999999999999999998888754

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.15  E-value=0.013  Score=42.89  Aligned_cols=37  Identities=22%  Similarity=0.334  Sum_probs=32.9

Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCCC
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAEK  117 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~~  117 (204)
                      -.|.||.|+|.|.+|...+..++.+|+ +|+..|++..
T Consensus        28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~   65 (176)
T d1d1ta2          28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKD   65 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHH
Confidence            368999999999999999999999995 7999987654

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.15  E-value=0.018  Score=44.93  Aligned_cols=40  Identities=18%  Similarity=0.244  Sum_probs=35.0

Q ss_pred             cccccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           77 LTTKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        77 ~~~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ....|+||++.|-| -+.||+++|+.|..-|++|+..+++.
T Consensus        12 ~~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~   52 (272)
T d1g0oa_          12 QSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANS   52 (272)
T ss_dssp             GGGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            34679999999999 68999999999999999998876653

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.14  E-value=0.0078  Score=46.64  Aligned_cols=37  Identities=14%  Similarity=0.251  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|+||++.|-|- +.||+++|+.|..-|++|+..+|+.
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~   40 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILD   40 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            589999999996 6799999999999999999988864

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=95.13  E-value=0.0069  Score=47.03  Aligned_cols=37  Identities=24%  Similarity=0.346  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|+||++.|-| -+.||+++|+.|..-|++|+..+|+.
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   40 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHS   40 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            48999999999 56799999999999999999988864

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=95.08  E-value=0.013  Score=42.91  Aligned_cols=37  Identities=22%  Similarity=0.366  Sum_probs=32.2

Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCCC
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAEK  117 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~~  117 (204)
                      -.|.+|.|+|.|.||...+..++.+|+ +|+..+++..
T Consensus        26 ~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~   63 (174)
T d1p0fa2          26 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKD   63 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHH
Confidence            368999999999999999999999997 6788877653

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.07  E-value=0.02  Score=39.27  Aligned_cols=35  Identities=26%  Similarity=0.311  Sum_probs=32.0

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      ++++.|||-|.||-++|..+..+|.+|..+.+.+.
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM   66 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence            47999999999999999999999999998887654

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=95.04  E-value=0.017  Score=40.94  Aligned_cols=35  Identities=23%  Similarity=0.253  Sum_probs=30.6

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcC--CEEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFG--CFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg--~~V~~~~r~~  116 (204)
                      +||+|-|||-|.+|-++|..|+.++  .+|+.+++.+
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            5899999999999999999998877  5788877655

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.01  E-value=0.016  Score=43.73  Aligned_cols=35  Identities=26%  Similarity=0.387  Sum_probs=32.1

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      ||+|.|||-|.-|-..|..|+..|.+|+.+.++.+
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~   35 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGK   35 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            69999999999999999999999999999987543

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=94.98  E-value=0.013  Score=45.68  Aligned_cols=37  Identities=30%  Similarity=0.293  Sum_probs=33.1

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +|+||++.|-|- +.||+++|+.|..-|++|+..+|+.
T Consensus         1 rl~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   38 (258)
T d1iy8a_           1 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSS   38 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            479999999996 4699999999999999999988864

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=94.90  E-value=0.012  Score=39.44  Aligned_cols=39  Identities=15%  Similarity=0.137  Sum_probs=33.8

Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..+.+||+|.|||-|+.|..+|.-+....-++++..++.
T Consensus        27 ~~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          27 PELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             GGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             hhhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            457899999999999999999999999988887666544

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.85  E-value=0.013  Score=45.39  Aligned_cols=36  Identities=17%  Similarity=0.184  Sum_probs=31.1

Q ss_pred             cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcC
Q 045521           79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSR  114 (204)
Q Consensus        79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r  114 (204)
                      +.|.||++.|-|- +.||+++|+.|..-|++|+...+
T Consensus         2 ~~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~   38 (259)
T d1ja9a_           2 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYG   38 (259)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcC
Confidence            4699999999995 56999999999999999986544

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=94.81  E-value=0.015  Score=44.85  Aligned_cols=37  Identities=16%  Similarity=0.314  Sum_probs=32.5

Q ss_pred             ccCCCEEEEEeC-Ch--HHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GR--IGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~--IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|+||++.|.|. |.  ||+++|+.|..-|++|+..++..
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~   42 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR   42 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCCh
Confidence            489999999996 54  99999999999999998877654

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.80  E-value=0.017  Score=42.25  Aligned_cols=39  Identities=21%  Similarity=0.198  Sum_probs=34.4

Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      +.+++||+|.|+|.|..+++++..|...| +|..++|+..
T Consensus        13 ~~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~   51 (177)
T d1nvta1          13 IGRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVE   51 (177)
T ss_dssp             HCCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHH
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhh
Confidence            34689999999999999999999998887 8999999753

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.79  E-value=0.0082  Score=44.23  Aligned_cols=30  Identities=27%  Similarity=0.219  Sum_probs=24.0

Q ss_pred             CEEEEEeCChHHHHHHHHHhh-cCCEEEEEc
Q 045521           84 RSVGIIGLGRIGMAVAKRAEA-FGCFISYRS  113 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~-fg~~V~~~~  113 (204)
                      .+|||.|||+|||.+.+.+.. =.++|..+.
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaIN   33 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGIT   33 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEe
Confidence            589999999999999998854 347776553

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=94.76  E-value=0.021  Score=44.78  Aligned_cols=37  Identities=27%  Similarity=0.350  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|+||++.|-|- +.||+++|+.|..-|++|+..+|+.
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   39 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSA   39 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            489999999995 7999999999999999999988864

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.75  E-value=0.029  Score=39.09  Aligned_cols=38  Identities=24%  Similarity=0.281  Sum_probs=34.4

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN  119 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~  119 (204)
                      .++++.|||-|-||-++|..++..|.+|..+.+..+..
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l   71 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVL   71 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeeccccc
Confidence            47899999999999999999999999999998876653

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.70  E-value=0.021  Score=40.73  Aligned_cols=36  Identities=25%  Similarity=0.223  Sum_probs=29.6

Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcCC--EEEEEcCCC
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFGC--FISYRSRAE  116 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg~--~V~~~~r~~  116 (204)
                      -.+++|+|||.|.+|+.+|-.+...+.  ++..+|...
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            467899999999999999999876554  788888653

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=94.67  E-value=0.016  Score=45.26  Aligned_cols=36  Identities=31%  Similarity=0.339  Sum_probs=32.4

Q ss_pred             cccCCCEEEEEeCC---hHHHHHHHHHhhcCCEEEEEcC
Q 045521           79 TKISGRSVGIIGLG---RIGMAVAKRAEAFGCFISYRSR  114 (204)
Q Consensus        79 ~~l~g~tvGIvG~G---~IG~~va~~~~~fg~~V~~~~r  114 (204)
                      .+|+||++.|-|.+   .||+++|+.|...|++|+..+|
T Consensus         4 ~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~   42 (297)
T d1d7oa_           4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTW   42 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEE
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeC
Confidence            47999999999986   5999999999999999987765

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=94.63  E-value=0.16  Score=32.89  Aligned_cols=75  Identities=21%  Similarity=0.275  Sum_probs=53.3

Q ss_pred             CEEEEEeCChHHH-HHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCcCCC
Q 045521           84 RSVGIIGLGRIGM-AVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGL  162 (204)
Q Consensus        84 ~tvGIvG~G~IG~-~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l~~~  162 (204)
                      ++|=+||.|.+|. .+|+.|+..|++|.+.|+...             +..+.|++--+. ...   .+.   ++-+.+.
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~-------------~~t~~L~~~Gi~-i~~---gh~---~~~i~~~   61 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEET-------------ERTAYLRKLGIP-IFV---PHS---ADNWYDP   61 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCC-------------HHHHHHHHTTCC-EES---SCC---TTSCCCC
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCC-------------hhHHHHHHCCCe-EEe---eec---ccccCCC
Confidence            5788999999998 789999999999999997642             345556664443 111   111   1234566


Q ss_pred             CceEEcccCCCCcHHH
Q 045521          163 ENVVLLPHAASGTEET  178 (204)
Q Consensus       163 ~nvilTPH~a~~t~~~  178 (204)
                      +-|+.||.+.-...|.
T Consensus        62 d~vV~SsAI~~~npel   77 (89)
T d1j6ua1          62 DLVIKTPAVRDDNPEI   77 (89)
T ss_dssp             SEEEECTTCCTTCHHH
T ss_pred             CEEEEecCcCCCCHHH
Confidence            7899999998777663

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.60  E-value=0.023  Score=42.28  Aligned_cols=35  Identities=26%  Similarity=0.433  Sum_probs=31.0

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~  116 (204)
                      .|.||.|+|.|.||...+..++.+|+ +|++.++++
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~   60 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP   60 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence            58899999999999999999999999 677777754

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.60  E-value=0.011  Score=46.41  Aligned_cols=37  Identities=32%  Similarity=0.380  Sum_probs=33.1

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +|+||++.|-|. +.||+++|+.|..-|++|+..+|+.
T Consensus         1 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   38 (274)
T d1xhla_           1 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNE   38 (274)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            479999999996 5799999999999999999988864

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=94.59  E-value=0.011  Score=47.31  Aligned_cols=59  Identities=22%  Similarity=0.465  Sum_probs=43.0

Q ss_pred             CCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCC--------C---CCcceeCHHHHHHHHHcCC
Q 045521           82 SGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNT--------K---YKGALVDESELVSALLEDR  140 (204)
Q Consensus        82 ~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~--------~---~~G~lvd~~aL~~aL~~g~  140 (204)
                      +.|||.|+| .|.||+.+++.|..-|.+|.+..|.+....        .   ..|.+-|..++++++..|.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~   72 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGA   72 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCC
Confidence            468999999 699999999999999999999888654210        1   1166666666666555543

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=94.53  E-value=0.03  Score=40.58  Aligned_cols=37  Identities=16%  Similarity=0.308  Sum_probs=31.3

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCC--EEEEEcCC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGC--FISYRSRA  115 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~--~V~~~~r~  115 (204)
                      ..+..++|+|||.|++|+.+|-.+...|.  ++..+|..
T Consensus        16 ~~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~   54 (160)
T d1i0za1          16 ATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVL   54 (160)
T ss_dssp             CCCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             ccCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            34678899999999999999999976665  78888875

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=94.49  E-value=0.029  Score=40.30  Aligned_cols=35  Identities=17%  Similarity=0.157  Sum_probs=28.7

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~  116 (204)
                      +.++|+|||.|++|+.+|-.+...+. ++..+|...
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            56899999999999999988776554 788888654

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.49  E-value=0.025  Score=40.95  Aligned_cols=35  Identities=34%  Similarity=0.476  Sum_probs=31.4

Q ss_pred             CCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|.+|.|.|. |.||+...+.++.+|++|++.++++
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~   63 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTE   63 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEeccccccccccccccccCcccccccccc
Confidence            6899999995 9999999999999999998877654

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=94.46  E-value=0.0093  Score=46.37  Aligned_cols=36  Identities=22%  Similarity=0.355  Sum_probs=32.2

Q ss_pred             cCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           81 ISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        81 l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      |+||++.|-|- +.||+++|+.|..-|++|+..+|+.
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~   38 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            78999999986 5599999999999999999988864

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=94.39  E-value=0.024  Score=43.81  Aligned_cols=37  Identities=19%  Similarity=0.319  Sum_probs=33.1

Q ss_pred             ccCCCEEEEEeC-C--hHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-G--RIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G--~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|+||++.|.|. |  .||+++|+.|..-|++|+..+|+.
T Consensus         2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~   41 (274)
T d2pd4a1           2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE   41 (274)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred             cCCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            389999999996 4  499999999999999999888864

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.35  E-value=0.015  Score=45.15  Aligned_cols=37  Identities=22%  Similarity=0.213  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +|+||++.|-|- +.||+++|+.|..-|++|+..+|+.
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHA   39 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            589999999995 7899999999999999999988864

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=94.35  E-value=0.027  Score=40.16  Aligned_cols=35  Identities=17%  Similarity=0.153  Sum_probs=29.4

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcC--CEEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFG--CFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg--~~V~~~~r~~  116 (204)
                      ..++|+|||.|++|..+|..+...|  -+|..+|+..
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            4679999999999999999987655  5788888753

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.32  E-value=0.025  Score=41.44  Aligned_cols=32  Identities=22%  Similarity=0.253  Sum_probs=29.3

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      ++|+|||.|..|.++|..|..-|-+|..|.|.
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~   32 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTE   32 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            48999999999999999999889999998874

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.30  E-value=0.021  Score=41.53  Aligned_cols=35  Identities=23%  Similarity=0.245  Sum_probs=29.9

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEE-EEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFIS-YRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~-~~~r~~  116 (204)
                      .|.+|.|+|.|.||...+..++.+|++++ ..++++
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~   63 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE   63 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHH
Confidence            68999999999999999999999999765 445543

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=94.28  E-value=0.031  Score=39.54  Aligned_cols=33  Identities=27%  Similarity=0.275  Sum_probs=26.8

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~  116 (204)
                      ++|+|||.|++|..+|-.+..-+. ++..+|...
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence            699999999999999988764443 788888654

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=94.22  E-value=0.015  Score=44.76  Aligned_cols=36  Identities=22%  Similarity=0.341  Sum_probs=31.5

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSR  114 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r  114 (204)
                      ..|++++|.|+|+|.+|..+|..|...|. ++..+|.
T Consensus        26 ~kL~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~   62 (247)
T d1jw9b_          26 EALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDF   62 (247)
T ss_dssp             HHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECC
T ss_pred             HHHhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence            35999999999999999999999999998 4566664

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.21  E-value=0.04  Score=39.82  Aligned_cols=36  Identities=25%  Similarity=0.363  Sum_probs=29.7

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCC--EEEEEcCC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGC--FISYRSRA  115 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~--~V~~~~r~  115 (204)
                      .+...+|+|||.|++|..+|-.+...|.  ++..+|..
T Consensus        16 ~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~   53 (159)
T d2ldxa1          16 KLSRCKITVVGVGDVGMACAISILLKGLADELALVDAD   53 (159)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            4666799999999999999999875554  78888865

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=94.21  E-value=0.032  Score=40.34  Aligned_cols=36  Identities=25%  Similarity=0.409  Sum_probs=31.9

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAEK  117 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~~  117 (204)
                      .|.||.|+|.|.+|...+..++.+|+ +|++.+++..
T Consensus        28 ~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~   64 (176)
T d2jhfa2          28 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKD   64 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHH
Confidence            68999999999999999999999996 7788877654

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=94.20  E-value=0.017  Score=42.46  Aligned_cols=29  Identities=34%  Similarity=0.546  Sum_probs=25.5

Q ss_pred             EEEEEeCChHHHHHHHHHhhcCCEEEEEc
Q 045521           85 SVGIIGLGRIGMAVAKRAEAFGCFISYRS  113 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~  113 (204)
                      +|||=|||+|||.+.|.+..-+.+|.+..
T Consensus         2 kIgINGfGRIGR~~~R~~~~~~~~ivaIN   30 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAALEMGAQVVAVN   30 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEE
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEEC
Confidence            79999999999999999977788887664

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=94.18  E-value=0.024  Score=43.36  Aligned_cols=38  Identities=18%  Similarity=0.390  Sum_probs=33.1

Q ss_pred             ccCCCEEEEEeCCh---HHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           80 KISGRSVGIIGLGR---IGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        80 ~l~g~tvGIvG~G~---IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .|.||++.|-|.+.   ||+++|+.|..-|++|+..+|+.+
T Consensus         2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~   42 (258)
T d1qsga_           2 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK   42 (258)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             cCCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            38999999999764   999999999999999988877643

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=94.13  E-value=0.049  Score=40.08  Aligned_cols=41  Identities=20%  Similarity=0.319  Sum_probs=36.2

Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCC
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKP  118 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~  118 (204)
                      ......|+|.|||-|..|-+.|..|...|.+|..+.+.+..
T Consensus        38 ~~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~   78 (179)
T d1ps9a3          38 LPAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI   78 (179)
T ss_dssp             CSCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CCCCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCcc
Confidence            34567899999999999999999999999999999887643

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.02  E-value=0.022  Score=44.29  Aligned_cols=38  Identities=21%  Similarity=0.391  Sum_probs=33.8

Q ss_pred             cccCCCEEEEEeCC-hHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGLG-RIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~G-~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..|+||++.|.|.+ .||+++|+.|...|++|+..+|+.
T Consensus        10 ~~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~   48 (269)
T d1xu9a_          10 EMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK   48 (269)
T ss_dssp             GGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            34999999999964 599999999999999999998864

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=93.98  E-value=0.028  Score=40.75  Aligned_cols=36  Identities=22%  Similarity=0.205  Sum_probs=32.4

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAEK  117 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~~  117 (204)
                      ++|+|.|+|.|..+++++.-|+..|+ +|..++|+.+
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~   52 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVK   52 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHH
Confidence            68999999999999999999999998 6888888753

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=93.98  E-value=0.043  Score=40.65  Aligned_cols=38  Identities=16%  Similarity=0.295  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .+.-.+|.|||.|..|..-++.++++|++|..+|.+..
T Consensus        26 ~V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~   63 (183)
T d1l7da1          26 TVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA   63 (183)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CcCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence            45677999999999999999999999999999997653

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.93  E-value=0.021  Score=44.17  Aligned_cols=36  Identities=19%  Similarity=0.202  Sum_probs=32.0

Q ss_pred             cCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           81 ISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        81 l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +.||++.|-|- +.||+++|+.|..-|++|+..+|+.
T Consensus         1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~   37 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNL   37 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            46999999996 6699999999999999999988864

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=93.90  E-value=0.036  Score=39.42  Aligned_cols=32  Identities=41%  Similarity=0.578  Sum_probs=26.9

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCC--EEEEEcCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGC--FISYRSRA  115 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~--~V~~~~r~  115 (204)
                      |+|+|||.|+||..+|-.+...|+  ++..+|..
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   35 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN   35 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecc
Confidence            799999999999999998875554  78888864

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=93.79  E-value=0.06  Score=36.23  Aligned_cols=55  Identities=18%  Similarity=0.224  Sum_probs=38.3

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhc---CCEEEEEcCCCCCCCCCCcceeCH---HHHHHHHHcCCce
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAF---GCFISYRSRAEKPNTKYKGALVDE---SELVSALLEDRLA  142 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~f---g~~V~~~~r~~~~~~~~~G~lvd~---~aL~~aL~~g~i~  142 (204)
                      .+++.|||-|.||-++|..+..+   |.+|..+.+.++.-..     .|.   +.+.+.|++..+.
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~-----~d~~~~~~~~~~l~~~GI~   78 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRG-----FDSELRKQLTEQLRANGIN   78 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTT-----SCHHHHHHHHHHHHHTTEE
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceeccccccccc-----ccchhhHHHHHHHhhCcEE
Confidence            47999999999999999887655   8899888776544322     233   2345556655453

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=93.75  E-value=0.034  Score=40.47  Aligned_cols=38  Identities=18%  Similarity=-0.006  Sum_probs=34.2

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..+.||+|.|+|.|..+++++..|..-+.+|..++|+.
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~   51 (171)
T d1p77a1          14 WLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF   51 (171)
T ss_dssp             CCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence            46899999999999999999999888788999999975

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.72  E-value=0.038  Score=42.00  Aligned_cols=36  Identities=28%  Similarity=0.314  Sum_probs=32.8

Q ss_pred             cCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           81 ISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        81 l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      |+||++.|-|- +.||+++|+.|..-|++|+..+|+.
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~   38 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE   38 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            78999999996 6799999999999999999988863

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.71  E-value=0.04  Score=42.29  Aligned_cols=37  Identities=19%  Similarity=0.196  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|.||++.|-| -+.||+++|+.|..-|++|+..+|+.
T Consensus         3 ~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~   40 (245)
T d2ag5a1           3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINE   40 (245)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            38999999988 57999999999999999999998864

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=93.70  E-value=0.03  Score=41.10  Aligned_cols=29  Identities=24%  Similarity=0.227  Sum_probs=23.0

Q ss_pred             EEEEEeCChHHHHHHHHHhhcC---CEEEEEc
Q 045521           85 SVGIIGLGRIGMAVAKRAEAFG---CFISYRS  113 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~fg---~~V~~~~  113 (204)
                      +|||=|||+|||.+.|.+....   ++|.+.+
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~ivaIN   33 (172)
T d1rm4a1           2 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVIN   33 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSSCSEEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEEc
Confidence            7999999999999999876433   5666543

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=93.66  E-value=0.0084  Score=42.55  Aligned_cols=30  Identities=17%  Similarity=0.140  Sum_probs=22.2

Q ss_pred             EEEEeCChHHHHHHHHHhhcCCEE-EEEcCCC
Q 045521           86 VGIIGLGRIGMAVAKRAEAFGCFI-SYRSRAE  116 (204)
Q Consensus        86 vGIvG~G~IG~~va~~~~~fg~~V-~~~~r~~  116 (204)
                      ||+||+|++|+.+++.|+. +.++ ..++|+.
T Consensus         2 IgfIG~G~mg~~l~~~L~~-~~~~~~v~~R~~   32 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKD-RYEIGYILSRSI   32 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC-----CCCEECSSH
T ss_pred             EEEEeCcHHHHHHHHHHHh-CCCEEEEEeCCh
Confidence            7999999999999999976 4444 4678764

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=93.64  E-value=0.042  Score=42.24  Aligned_cols=58  Identities=26%  Similarity=0.258  Sum_probs=44.3

Q ss_pred             CCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCC-------------CC---CcceeCHHHHHHHHHcCC
Q 045521           83 GRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNT-------------KY---KGALVDESELVSALLEDR  140 (204)
Q Consensus        83 g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~-------------~~---~G~lvd~~aL~~aL~~g~  140 (204)
                      -++|.|.| .|.||+.+++.|..-|.+|+..+|......             ..   .|.+-|.+++.+++..-.
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~   77 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVD   77 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcc
Confidence            46799999 699999999999999999999888654321             01   177778888888776543

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=93.59  E-value=0.052  Score=41.30  Aligned_cols=48  Identities=13%  Similarity=0.129  Sum_probs=39.4

Q ss_pred             CEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHc
Q 045521           84 RSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLE  138 (204)
Q Consensus        84 ~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~  138 (204)
                      ++|.|.|. |-||+.+++.|+.-|.+|+..+|..       ..+-|.+++.++++.
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~-------~D~~d~~~~~~~l~~   50 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD-------LDITNVLAVNKFFNE   50 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT-------CCTTCHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh-------ccCCCHHHHHHHHHH
Confidence            46899996 9999999999999999999999865       345566777777664

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=93.57  E-value=0.058  Score=39.35  Aligned_cols=37  Identities=24%  Similarity=0.265  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ...-.+|.|+|.|..|..-++.++.+|++|..+|.+.
T Consensus        29 gv~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~   65 (168)
T d1pjca1          29 GVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV   65 (168)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence            4577899999999999999999999999999998764

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=93.51  E-value=0.032  Score=40.82  Aligned_cols=29  Identities=34%  Similarity=0.504  Sum_probs=24.7

Q ss_pred             EEEEEeCChHHHHHHHHHhhcCCEEEEEc
Q 045521           85 SVGIIGLGRIGMAVAKRAEAFGCFISYRS  113 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~  113 (204)
                      +|||=|||+|||.+.|.+..=+.+|.+.+
T Consensus         2 kigINGfGRIGR~~~R~l~~~~i~iv~IN   30 (168)
T d2g82a1           2 KVGINGFGRIGRQVFRILHSRGVEVALIN   30 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEEE
T ss_pred             EEEEECCcHHHHHHHHHHhcCCCEEEEEC
Confidence            79999999999999999876677877654

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.51  E-value=0.024  Score=41.80  Aligned_cols=36  Identities=33%  Similarity=0.421  Sum_probs=31.6

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      -|++|+|+|||||+-|++=|.-|+--|++|++=-|.
T Consensus        13 ~ik~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~   48 (182)
T d1np3a2          13 IIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRS   48 (182)
T ss_dssp             HHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCT
T ss_pred             HHCCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCC
Confidence            478999999999999999999999999998654443

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=93.50  E-value=0.036  Score=42.84  Aligned_cols=37  Identities=8%  Similarity=-0.016  Sum_probs=32.1

Q ss_pred             ccCCCEEEEEeCC-hHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGLG-RIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~G-~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +|+||++.|-|-+ .||+++|+.+..-|++|+...|..
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~   39 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRV   39 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESS
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            5899999999965 699999999999999987776554

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=93.47  E-value=0.03  Score=41.55  Aligned_cols=32  Identities=16%  Similarity=0.080  Sum_probs=29.3

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      ++|+|+|.|..|.++|..|..-|-+|..|+|.
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~   39 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMN   39 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSC
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEec
Confidence            57999999999999999999888899988875

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=93.44  E-value=0.03  Score=43.19  Aligned_cols=32  Identities=22%  Similarity=0.208  Sum_probs=26.3

Q ss_pred             EEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           85 SVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        85 tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ++.|-|- +.||+++|+.|..-|++|+..+|+.
T Consensus         3 ValITGas~GIG~aia~~la~~Ga~V~~~~r~~   35 (255)
T d1gega_           3 VALVTGAGQGIGKAIALRLVKDGFAVAIADYND   35 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEcCCccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3455575 5699999999999999999988864

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.41  E-value=0.045  Score=39.69  Aligned_cols=69  Identities=19%  Similarity=0.240  Sum_probs=39.8

Q ss_pred             EEEEEeCChHHHHHHHHHhh----cCCEEEEEcCCCCCC-----CC------CC-------cceeCHHHHHHHHHcCCce
Q 045521           85 SVGIIGLGRIGMAVAKRAEA----FGCFISYRSRAEKPN-----TK------YK-------GALVDESELVSALLEDRLA  142 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~----fg~~V~~~~r~~~~~-----~~------~~-------G~lvd~~aL~~aL~~g~i~  142 (204)
                      .|+|+|+|.||+.+++.+..    +..+|.+...+.+..     ..      +.       -.-.+.+.+.+.+......
T Consensus         6 ~I~l~G~G~VG~~l~~~l~~~~~~l~~~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (168)
T d1ebfa1           6 NVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLKTSPKP   85 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHHTTCSSC
T ss_pred             EEEEEeCCHHHHHHHHHHHHhHHHhhhheEEEEEeeeeeecccccchHhhhhhhhhhhhcccccccHHHHHHHhccCCCc
Confidence            68999999999999999864    344555543322110     00      00       2234455566666555544


Q ss_pred             EEEeeCCCCCC
Q 045521          143 AAVLDVFEHEP  153 (204)
Q Consensus       143 ga~lDV~~~EP  153 (204)
                      -...|....++
T Consensus        86 ~vivd~t~~~~   96 (168)
T d1ebfa1          86 VILVDNTSSAY   96 (168)
T ss_dssp             EEEEECSCCHH
T ss_pred             eEEEEecCChH
Confidence            45566665544

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=93.31  E-value=0.14  Score=38.27  Aligned_cols=38  Identities=16%  Similarity=0.246  Sum_probs=33.8

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN  119 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~  119 (204)
                      ..++|.|||.|..|..+|..|+..|.+|..+++...+.
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~   40 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPL   40 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            56799999999999999999999999999999876543

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=93.31  E-value=0.049  Score=39.22  Aligned_cols=35  Identities=20%  Similarity=0.289  Sum_probs=29.9

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~  116 (204)
                      .|.+|.|+|.|.+|...+..++.+|+ +|++.++++
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~   67 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE   67 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence            48999999999999999999999997 456666654

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=93.29  E-value=0.067  Score=40.60  Aligned_cols=57  Identities=26%  Similarity=0.319  Sum_probs=42.4

Q ss_pred             CCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCCC--------------C---CcceeCHHHHHHHHHcC
Q 045521           83 GRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNTK--------------Y---KGALVDESELVSALLED  139 (204)
Q Consensus        83 g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~~--------------~---~G~lvd~~aL~~aL~~g  139 (204)
                      -|+|.|.|. |.||+.+++.|..-|.+|.+.+|.......              .   .|.+-+.+++.++++..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   77 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNV   77 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhc
Confidence            578999994 999999999998889999999986543211              0   15666666666666543

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=93.28  E-value=0.031  Score=35.50  Aligned_cols=36  Identities=17%  Similarity=0.241  Sum_probs=32.0

Q ss_pred             CCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           82 SGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        82 ~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .|.+|.|.|- |.+|....++++.+|++|++..++++
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~   67 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRES   67 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGG
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHH
Confidence            6889999886 99999999999999999999887654

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=93.22  E-value=0.057  Score=38.11  Aligned_cols=33  Identities=21%  Similarity=0.150  Sum_probs=26.7

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcC--CEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFG--CFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg--~~V~~~~r~~  116 (204)
                      ++|+|||.|++|+.+|-.+...+  -++..+|...
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~   36 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   36 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence            58999999999999998886544  4888888765

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=93.21  E-value=0.044  Score=40.07  Aligned_cols=29  Identities=28%  Similarity=0.234  Sum_probs=23.9

Q ss_pred             EEEEEeCChHHHHHHHHHhh---cCCEEEEEc
Q 045521           85 SVGIIGLGRIGMAVAKRAEA---FGCFISYRS  113 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~---fg~~V~~~~  113 (204)
                      +|||=|||+|||.+.|.+-.   .+.+|.+.+
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~vvaIN   33 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAIN   33 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred             EEEEECCChHHHHHHHHHHhccCCCEEEEEec
Confidence            79999999999999998753   357877654

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=93.05  E-value=0.079  Score=37.16  Aligned_cols=33  Identities=21%  Similarity=0.245  Sum_probs=27.7

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCC--EEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGC--FISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~--~V~~~~r~~  116 (204)
                      .+|+|||.|++|+.+|..+...+.  ++..+|...
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~   35 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence            479999999999999999876664  788888754

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.01  E-value=0.041  Score=40.09  Aligned_cols=32  Identities=25%  Similarity=0.328  Sum_probs=26.2

Q ss_pred             CEEEEEeCChHHHHHHHHHhhc-CCEEEE-EcCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAF-GCFISY-RSRA  115 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~f-g~~V~~-~~r~  115 (204)
                      -++||||+|.+|+..++.++.. +++|.+ +++.
T Consensus         2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~   35 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRS   35 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSS
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCC
Confidence            3799999999999999999876 778765 4554

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=92.89  E-value=0.071  Score=40.94  Aligned_cols=37  Identities=22%  Similarity=0.306  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|+||++.|-| -+.||+++|+.|..-|++|+..+|+.
T Consensus         2 ~l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~   39 (248)
T d2d1ya1           2 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRP   39 (248)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            38999999999 67899999999999999999888864

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.79  E-value=0.086  Score=39.60  Aligned_cols=38  Identities=29%  Similarity=0.296  Sum_probs=34.4

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .-.+|+|.|||-|..|-..|..|+..|++|..+.+..+
T Consensus        46 ~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          46 TKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK   83 (233)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             ccCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence            35789999999999999999999999999999987654

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.77  E-value=0.088  Score=39.85  Aligned_cols=37  Identities=19%  Similarity=0.235  Sum_probs=32.1

Q ss_pred             CCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCC
Q 045521           82 SGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKP  118 (204)
Q Consensus        82 ~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~  118 (204)
                      .||+|.|.|- |.||+++|+.+..-|++|...++....
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~   38 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENE   38 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            4899999996 679999999999999999888775543

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.73  E-value=0.067  Score=38.30  Aligned_cols=35  Identities=26%  Similarity=0.389  Sum_probs=29.9

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r~~  116 (204)
                      .|.||.|+|.|.+|...+..++.+|++ |+..++++
T Consensus        28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~   63 (176)
T d2fzwa2          28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINK   63 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccH
Confidence            589999999999999999999999975 55566544

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=92.67  E-value=0.051  Score=39.60  Aligned_cols=30  Identities=37%  Similarity=0.413  Sum_probs=24.5

Q ss_pred             EEEEEeCChHHHHHHHHHhhc-CCEEEEEcC
Q 045521           85 SVGIIGLGRIGMAVAKRAEAF-GCFISYRSR  114 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~f-g~~V~~~~r  114 (204)
                      +|||=|||+|||.+.|.+... .++|.+.+.
T Consensus         3 kigINGFGRIGR~v~R~~~~~~~i~ivaINd   33 (166)
T d1gado1           3 KVGINGFGRIGRIVFRAAQKRSDIEIVAIND   33 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEEC
T ss_pred             EEEEECCcHHHHHHHHHHhhCCCeEEEEEeC
Confidence            799999999999999988654 577776653

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=92.63  E-value=0.066  Score=37.69  Aligned_cols=32  Identities=9%  Similarity=0.039  Sum_probs=28.7

Q ss_pred             EEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+-|+|+|++|+.+++.|...|.+|+..+..+
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            58899999999999999999999998887654

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=92.59  E-value=0.053  Score=41.81  Aligned_cols=37  Identities=19%  Similarity=0.341  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|+||++.|-|- +.||+++|+.|..-|++|+..+|+.
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~   40 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINE   40 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            589999999995 5699999999999999999988864

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.54  E-value=0.053  Score=42.06  Aligned_cols=35  Identities=26%  Similarity=0.387  Sum_probs=30.1

Q ss_pred             CCCEEEEE--eCChHHHHHHHHHhh-cCCEEEEEcCCC
Q 045521           82 SGRSVGII--GLGRIGMAVAKRAEA-FGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIv--G~G~IG~~va~~~~~-fg~~V~~~~r~~  116 (204)
                      +||+|.||  |-+.||+++|+.|.. .|.+|+..+|+.
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~   38 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDV   38 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCH
Confidence            58999988  789999999998764 699999998865

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.51  E-value=0.074  Score=36.90  Aligned_cols=32  Identities=25%  Similarity=0.345  Sum_probs=26.6

Q ss_pred             CEEEEEeC-ChHHHHHHHHHhhcCCEEE-EEcCC
Q 045521           84 RSVGIIGL-GRIGMAVAKRAEAFGCFIS-YRSRA  115 (204)
Q Consensus        84 ~tvGIvG~-G~IG~~va~~~~~fg~~V~-~~~r~  115 (204)
                      .+|+|+|+ |+.|+++++.+..-++++. .+++.
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~   34 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVN   34 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCC
Confidence            47999996 9999999999999999975 34543

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.45  E-value=0.11  Score=36.48  Aligned_cols=61  Identities=16%  Similarity=0.126  Sum_probs=42.4

Q ss_pred             cccCCCEEEEE--eCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCc
Q 045521           79 TKISGRSVGII--GLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRL  141 (204)
Q Consensus        79 ~~l~g~tvGIv--G~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i  141 (204)
                      ...-++.+-|+  |-|.||-++|..+..+|++|..+.+........  .--....+.+.|++..+
T Consensus        35 ~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~~--~~~~~~~~~~~l~~~GV   97 (156)
T d1djqa2          35 KKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMH--FTLEYPNMMRRLHELHV   97 (156)
T ss_dssp             CSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHHH--HTTCHHHHHHHHHHTTC
T ss_pred             ccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcccccc--chhHHHHHHHHHhhccc
Confidence            34557888887  889999999999999999999998865432111  01123456666665444

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=92.40  E-value=0.039  Score=40.37  Aligned_cols=29  Identities=34%  Similarity=0.383  Sum_probs=23.4

Q ss_pred             EEEEEeCChHHHHHHHHHhhc-CCEEEEEc
Q 045521           85 SVGIIGLGRIGMAVAKRAEAF-GCFISYRS  113 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~f-g~~V~~~~  113 (204)
                      +|||=|||+|||.+.|.+-.- ..+|.+..
T Consensus         3 kIgINGFGRIGR~v~R~~~~~~~~~ivaIN   32 (169)
T d1u8fo1           3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAIN   32 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSEEEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCcEEEEec
Confidence            799999999999999987543 56776653

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=92.31  E-value=0.075  Score=40.63  Aligned_cols=36  Identities=22%  Similarity=0.329  Sum_probs=32.3

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .-|+|.|||-|-.|-..|..|+..|.+|..+.+...
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~   64 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASER   64 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            457999999999999999999999999999987653

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=92.20  E-value=0.23  Score=33.96  Aligned_cols=40  Identities=15%  Similarity=0.128  Sum_probs=35.4

Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      +...+||+|.|||-|+.+-.-|..|..+.-+|+.+.|..+
T Consensus        22 ~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~   61 (126)
T d1trba2          22 GFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG   61 (126)
T ss_dssp             GGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             hHHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccc
Confidence            3446899999999999999999999999999998877654

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.19  E-value=0.13  Score=39.95  Aligned_cols=57  Identities=21%  Similarity=0.256  Sum_probs=42.3

Q ss_pred             CEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCCC--------------CCcceeCHHHHHHHHHcCC
Q 045521           84 RSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNTK--------------YKGALVDESELVSALLEDR  140 (204)
Q Consensus        84 ~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~--------------~~G~lvd~~aL~~aL~~g~  140 (204)
                      |+|.|.| .|-||+.+++.|..-|.+|++++|.......              +.+.+-|.+.+.+.+....
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~   72 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQ   72 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcccHHHHHHhcccCCcEEEEccccChHHhhhhhcccc
Confidence            6899999 6999999999998889999999876432110              1166777777777666544

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=92.08  E-value=0.082  Score=37.61  Aligned_cols=30  Identities=30%  Similarity=0.269  Sum_probs=26.5

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEE
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISY  111 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~  111 (204)
                      .+++|.|||-|.+|-++|..++.+|.+|..
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v   31 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNI   31 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEE
Confidence            478999999999999999999999987543

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=92.05  E-value=0.079  Score=37.84  Aligned_cols=33  Identities=18%  Similarity=0.258  Sum_probs=25.1

Q ss_pred             CEEEEEeCChHHHH-HHHHHhhc-CCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMA-VAKRAEAF-GCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~-va~~~~~f-g~~V~~~~r~~  116 (204)
                      .+|||||+|.+|+. ....++.+ +.++.++++.+
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~   36 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNP   36 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCH
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCH
Confidence            47999999999976 56777665 56777777653

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=92.04  E-value=0.083  Score=38.98  Aligned_cols=38  Identities=26%  Similarity=0.413  Sum_probs=32.7

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+++||+|.|||.|..|-.+|..+..-+.++....++.
T Consensus        28 ~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          28 VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             CCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            46899999999999999999999988888887665554

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.95  E-value=0.062  Score=38.74  Aligned_cols=35  Identities=29%  Similarity=0.370  Sum_probs=30.8

Q ss_pred             CCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|.+|.|.| .|.||+..+++++.+|++|+...++.
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~   60 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSD   60 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeeeccc
Confidence            488999988 59999999999999999998876643

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=91.94  E-value=0.047  Score=40.03  Aligned_cols=29  Identities=28%  Similarity=0.244  Sum_probs=22.4

Q ss_pred             EEEEEeCChHHHHHHHHHhhc----CCEEEEEc
Q 045521           85 SVGIIGLGRIGMAVAKRAEAF----GCFISYRS  113 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~f----g~~V~~~~  113 (204)
                      +|||=|||+|||.+.|.+-.-    ..+|...+
T Consensus         3 kigINGfGRIGR~v~R~~~~~~~~~~~~vvaIN   35 (173)
T d1obfo1           3 RVAINGYGRIGRNILRAHYEGGKSHDIEIVAIN   35 (173)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEc
Confidence            799999999999999987532    34565554

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.85  E-value=0.054  Score=39.63  Aligned_cols=55  Identities=20%  Similarity=0.268  Sum_probs=41.0

Q ss_pred             CEEEEEe-CChHHHHHHHHHhhcC--CEEEEEcCCCCCC------CC-CCcceeCHHHHHHHHHc
Q 045521           84 RSVGIIG-LGRIGMAVAKRAEAFG--CFISYRSRAEKPN------TK-YKGALVDESELVSALLE  138 (204)
Q Consensus        84 ~tvGIvG-~G~IG~~va~~~~~fg--~~V~~~~r~~~~~------~~-~~G~lvd~~aL~~aL~~  138 (204)
                      +||.|.| .|.||+.+++.|..-|  ..|...+|++...      .. +.+.+-|.+.+.++++.
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   68 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQG   68 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTT
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCcEEEEeeecccccccccccc
Confidence            5999999 7999999999998767  4566666654321      11 12888899999998875

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.84  E-value=0.051  Score=45.43  Aligned_cols=35  Identities=23%  Similarity=0.238  Sum_probs=29.8

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSR  114 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r  114 (204)
                      .|++++|.|||+|.+|.++++.|...|. ++..+|.
T Consensus        34 ~l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~   69 (426)
T d1yovb1          34 LLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDM   69 (426)
T ss_dssp             HHHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECC
T ss_pred             HHhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEEC
Confidence            3789999999999999999999987777 5666664

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=91.82  E-value=0.066  Score=38.51  Aligned_cols=36  Identities=14%  Similarity=0.200  Sum_probs=31.0

Q ss_pred             CCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           82 SGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        82 ~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .|++|.|.|. |.+|+.++++++.+|++|+..+++..
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~   64 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQ   64 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHH
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEeecccchH
Confidence            4899999965 55999999999999999999877653

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=91.82  E-value=0.17  Score=40.37  Aligned_cols=56  Identities=25%  Similarity=0.166  Sum_probs=42.8

Q ss_pred             CEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCC-----------C-------C-CCcceeCHHHHHHHHHcC
Q 045521           84 RSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPN-----------T-------K-YKGALVDESELVSALLED  139 (204)
Q Consensus        84 ~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~-----------~-------~-~~G~lvd~~aL~~aL~~g  139 (204)
                      |.|.|.| .|-||+.+++.|...|.+|++.+|.....           .       . +.|.+-|.+++.++++.-
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~   77 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREV   77 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhcc
Confidence            6777888 89999999999999999999998843210           0       0 128889999999999864

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=91.60  E-value=0.14  Score=36.07  Aligned_cols=33  Identities=24%  Similarity=0.338  Sum_probs=26.4

Q ss_pred             CEEEEEeCChHHHHHHHHHh--hcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAE--AFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~--~fg~~V~~~~r~~  116 (204)
                      .+|+|||.|++|+.+|-.+.  .+.-++..+|...
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            47999999999999998876  4444788888653

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=91.55  E-value=0.13  Score=37.98  Aligned_cols=35  Identities=26%  Similarity=0.298  Sum_probs=31.4

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .-|+|.|||.|-.|-.+|..|+.-|.+|..+++..
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            35689999999999999999999999999998743

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=91.53  E-value=0.18  Score=39.74  Aligned_cols=57  Identities=16%  Similarity=0.191  Sum_probs=41.6

Q ss_pred             CEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCC--------------CC-CcceeCHHHHHHHHHcCC
Q 045521           84 RSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNT--------------KY-KGALVDESELVSALLEDR  140 (204)
Q Consensus        84 ~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~--------------~~-~G~lvd~~aL~~aL~~g~  140 (204)
                      ++|.|.| .|-||+.+++.|...|.+|+++++......              .+ .|.+-|.+.|.+++++.+
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~   73 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHA   73 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhccC
Confidence            3688888 699999999999999999999876432211              01 177777777777777543

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=91.49  E-value=0.15  Score=34.29  Aligned_cols=54  Identities=24%  Similarity=0.225  Sum_probs=38.6

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcCC---EEEEEcCCCCCCCCCCcceeCHH---HHHHHHHcCCc
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFGC---FISYRSRAEKPNTKYKGALVDES---ELVSALLEDRL  141 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg~---~V~~~~r~~~~~~~~~G~lvd~~---aL~~aL~~g~i  141 (204)
                      .+++.|||-|.||-++|..+..|+.   +|..+.+..+.-..     .|++   .+.+.|++..+
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~-----~d~~~~~~l~~~l~~~GV   79 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRG-----FDHTLREELTKQLTANGI   79 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTT-----SCHHHHHHHHHHHHHTTC
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcc-----cchHHHHHHHHHHHhcCc
Confidence            4799999999999999999888875   58877776544322     3333   35666766544

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=91.43  E-value=0.11  Score=37.82  Aligned_cols=35  Identities=14%  Similarity=0.102  Sum_probs=30.6

Q ss_pred             CCCEEEEE--eCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGII--GLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIv--G~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|+++.|+  |.|.+|+...+++|.+|++|+...++.
T Consensus        28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~   64 (189)
T d1gu7a2          28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDR   64 (189)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCC
T ss_pred             CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecc
Confidence            58899998  679999999999999999998876554

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=91.15  E-value=0.19  Score=35.62  Aligned_cols=34  Identities=15%  Similarity=0.087  Sum_probs=26.6

Q ss_pred             CCEEEEEeCChHHHHHHHHHhhcC-CEEEEEcCCC
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEAFG-CFISYRSRAE  116 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~fg-~~V~~~~r~~  116 (204)
                      ..+|+|||.|++|+.+|-.+..-+ .++..+|...
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~   37 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   37 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence            468999999999999998775433 3677788754

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=91.09  E-value=0.11  Score=37.61  Aligned_cols=35  Identities=23%  Similarity=0.394  Sum_probs=31.5

Q ss_pred             CCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|++|.|.|. |.+|+..+++++..|++|++..+++
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~   64 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSD   64 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCH
Confidence            5999999998 7799999999999999999887654

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=91.00  E-value=0.11  Score=39.88  Aligned_cols=34  Identities=24%  Similarity=0.311  Sum_probs=29.2

Q ss_pred             CCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           83 GRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        83 g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ||.+.|-|- +.||+++|+.|..-|++|+..+|+.
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~   36 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGE   36 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            677778785 5699999999999999999988864

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=90.95  E-value=0.11  Score=37.57  Aligned_cols=38  Identities=16%  Similarity=0.120  Sum_probs=32.9

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      ...|.+|.|-| .|.+|....+++|.+|++|+...++..
T Consensus        21 ~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~   59 (167)
T d1tt7a2          21 SPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNRE   59 (167)
T ss_dssp             CGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSS
T ss_pred             CCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHH
Confidence            34577899999 599999999999999999999877654

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.89  E-value=0.2  Score=36.43  Aligned_cols=38  Identities=16%  Similarity=0.148  Sum_probs=33.7

Q ss_pred             cccccCCCEEEEEeCChH-HHHHHHHHhhcCCEEEEEcC
Q 045521           77 LTTKISGRSVGIIGLGRI-GMAVAKRAEAFGCFISYRSR  114 (204)
Q Consensus        77 ~~~~l~g~tvGIvG~G~I-G~~va~~~~~fg~~V~~~~r  114 (204)
                      .+.+++||++.|||-++| |+-+|.+|..-|+.|.-.+.
T Consensus        23 ~g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~   61 (171)
T d1edza1          23 EGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDV   61 (171)
T ss_dssp             TTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECS
T ss_pred             ccCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEecc
Confidence            467899999999999986 99999999999999976654

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=90.60  E-value=0.19  Score=35.83  Aligned_cols=37  Identities=22%  Similarity=0.354  Sum_probs=31.4

Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCCC
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAEK  117 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~~  117 (204)
                      -.|.||.|+|.|.+|...+..++.+|. +|+..+++..
T Consensus        27 k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~   64 (175)
T d1cdoa2          27 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPD   64 (175)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCCCEEEEEecCCccchHHHHHHHHhhchheeecchHH
Confidence            368999999999999999999998888 5777777653

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.57  E-value=0.33  Score=36.67  Aligned_cols=59  Identities=15%  Similarity=0.155  Sum_probs=39.8

Q ss_pred             CEEEEEeC-ChHHHHHHHHHh---hcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHH-cCCceEEEeeCCCCC
Q 045521           84 RSVGIIGL-GRIGMAVAKRAE---AFGCFISYRSRAEKPNTKYKGALVDESELVSALL-EDRLAAAVLDVFEHE  152 (204)
Q Consensus        84 ~tvGIvG~-G~IG~~va~~~~---~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~-~g~i~ga~lDV~~~E  152 (204)
                      |||.|-|. ..||+++|+.|.   .-|.+|+..+|+....          +++.+..+ .+++....+|+.+.|
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~----------~~~~~~~~~~~~~~~~~~Dvs~~~   66 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQA----------KELEDLAKNHSNIHILEIDLRNFD   66 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSC----------HHHHHHHHHCTTEEEEECCTTCGG
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHH----------HHHHHHHhcCCcEEEEEEEeccHH
Confidence            78999996 789999999885   4588999888876432          22222222 345666666766544

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=90.52  E-value=0.15  Score=36.22  Aligned_cols=34  Identities=21%  Similarity=0.230  Sum_probs=24.7

Q ss_pred             CEEEEEeCChHHHH-HHHHHhhc-CCEEE-EEcCCCC
Q 045521           84 RSVGIIGLGRIGMA-VAKRAEAF-GCFIS-YRSRAEK  117 (204)
Q Consensus        84 ~tvGIvG~G~IG~~-va~~~~~f-g~~V~-~~~r~~~  117 (204)
                      .+|||||+|++|+. ....++.+ ++++. .+|++..
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~   38 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRA   38 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCT
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhH
Confidence            37999999999987 46667654 77775 4566543

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.52  E-value=0.33  Score=38.30  Aligned_cols=56  Identities=14%  Similarity=0.170  Sum_probs=43.7

Q ss_pred             CCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCCC-------CC-cceeCHHHHHHHHH
Q 045521           82 SGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNTK-------YK-GALVDESELVSALL  137 (204)
Q Consensus        82 ~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~-------~~-G~lvd~~aL~~aL~  137 (204)
                      .+++|.|.| .|-||+.+++.|..-|-+|+++++.......       +. +.+-|.+.+.++++
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   78 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTE   78 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHHhh
Confidence            688999999 8999999999999999999998765433211       11 77777888888775

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=90.41  E-value=0.22  Score=37.72  Aligned_cols=34  Identities=21%  Similarity=0.370  Sum_probs=28.0

Q ss_pred             cCC-CEEEEEeCChHHHHHHHHHhh------cCCEEE-EEcC
Q 045521           81 ISG-RSVGIIGLGRIGMAVAKRAEA------FGCFIS-YRSR  114 (204)
Q Consensus        81 l~g-~tvGIvG~G~IG~~va~~~~~------fg~~V~-~~~r  114 (204)
                      +.| |+|+|||||+-|++=|.-|+-      -|.+|. +..+
T Consensus        41 ~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~   82 (226)
T d1qmga2          41 FKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRK   82 (226)
T ss_dssp             TTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECT
T ss_pred             hcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCC
Confidence            678 999999999999999999986      567774 4433

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.37  E-value=0.3  Score=35.43  Aligned_cols=39  Identities=13%  Similarity=0.181  Sum_probs=34.5

Q ss_pred             ccccCCCEEEEEeCCh-HHHHHHHHHhhcCCEEEEEcCCC
Q 045521           78 TTKISGRSVGIIGLGR-IGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~-IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +.+++||++.|||-+. +|+-+|.+|..-|+.|..++.+.
T Consensus        34 ~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t   73 (170)
T d1a4ia1          34 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT   73 (170)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred             CcccccceEEEEecCCccchHHHHHHHhccCceEEEeccc
Confidence            5679999999999987 89999999999999998776544

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=90.29  E-value=0.084  Score=38.55  Aligned_cols=29  Identities=34%  Similarity=0.381  Sum_probs=22.8

Q ss_pred             EEEEEeCChHHHHHHHHHhhc-CCEEEEEc
Q 045521           85 SVGIIGLGRIGMAVAKRAEAF-GCFISYRS  113 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~f-g~~V~~~~  113 (204)
                      +|||=|||+|||.+.|.+-.- ..+|.+..
T Consensus         3 kIgINGfGRIGR~v~R~~l~~~~~~ivaIN   32 (171)
T d3cmco1           3 KVGINGFGRIGRNVFRAALKNPDIEVVAVN   32 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTEEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCcEEEEEc
Confidence            799999999999999988532 45666554

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=90.27  E-value=0.087  Score=38.27  Aligned_cols=29  Identities=31%  Similarity=0.344  Sum_probs=23.6

Q ss_pred             EEEEEeCChHHHHHHHHHhhc-CCEEEEEc
Q 045521           85 SVGIIGLGRIGMAVAKRAEAF-GCFISYRS  113 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~f-g~~V~~~~  113 (204)
                      +|||=|||+|||.+.|.+..- ..+|.+.+
T Consensus         2 kigINGfGRIGR~v~R~~~~~~~~~iv~IN   31 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGRKDIEVVAIN   31 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEE
T ss_pred             eEEEECCCHHHHHHHHHHhhCCCcEEEEEC
Confidence            799999999999999988643 56776654

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=90.22  E-value=0.25  Score=37.44  Aligned_cols=34  Identities=24%  Similarity=0.318  Sum_probs=29.0

Q ss_pred             CCEEEEEe-CChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521           83 GRSVGIIG-LGRIGMAVAKRAEAFGC-FISYRSRAE  116 (204)
Q Consensus        83 g~tvGIvG-~G~IG~~va~~~~~fg~-~V~~~~r~~  116 (204)
                      ++|+.|.| .|.||+++|+.|..-|. +|+..+|+.
T Consensus         9 ~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~   44 (259)
T d2fr1a1           9 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSG   44 (259)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSG
T ss_pred             cCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            56999999 68999999999999998 477777764

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.20  E-value=0.34  Score=37.78  Aligned_cols=56  Identities=29%  Similarity=0.211  Sum_probs=41.3

Q ss_pred             CEE-EEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCC-------------------C-CCcceeCHHHHHHHHHcC
Q 045521           84 RSV-GIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNT-------------------K-YKGALVDESELVSALLED  139 (204)
Q Consensus        84 ~tv-GIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~-------------------~-~~G~lvd~~aL~~aL~~g  139 (204)
                      |+| .|.| .|-||+.+++.|..-|.+|++++|......                   . +.|.+-|.+.+.++++..
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~   78 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEV   78 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhc
Confidence            567 6777 688999999999999999999988542110                   0 017777888888877653

>d2fcra_ c.23.5.1 (A:) Flavodoxin {Chondrus crispus [TaxId: 2769]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Chondrus crispus [TaxId: 2769]

Probab=90.11  E-value=0.056  Score=39.45  Aligned_cols=61  Identities=16%  Similarity=0.203  Sum_probs=44.1

Q ss_pred             ccCCCEEEEEeCCh----------HHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCceEEEeeCC
Q 045521           80 KISGRSVGIIGLGR----------IGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVF  149 (204)
Q Consensus        80 ~l~g~tvGIvG~G~----------IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~ga~lDV~  149 (204)
                      .+.||+++|+|+|.          .++.+.++++..|+++++..+...-  .|...        .++..|+.-|.+||.-
T Consensus        81 ~l~gk~~avFGlGD~~~y~~~F~~a~~~l~~~l~~~GA~~IG~~~~~gy--~f~~s--------~a~~~~~f~gL~lD~d  150 (173)
T d2fcra_          81 DMKDLPVAIFGLGDAEGYPDNFCDAIEEIHDCFAKQGAKPVGFSNPDDY--DYEES--------KSVRDGKFLGLPLDMV  150 (173)
T ss_dssp             CCTTCEEEEEEEECTTTCTTSTTTHHHHHHHHHHHTTCEEECCBCGGGS--CCSCC--------TTEETTEESSEEEETT
T ss_pred             CCCCCeEEEEEecCCCcchhhHHHHHHHHHHHHHhCCCEEecccCCCCc--ccccC--------hhhcCCcccccccccc
Confidence            58999999999884          5899999999999999976543211  11111        2466778889999964


Q ss_pred             C
Q 045521          150 E  150 (204)
Q Consensus       150 ~  150 (204)
                      .
T Consensus       151 n  151 (173)
T d2fcra_         151 N  151 (173)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=90.10  E-value=0.06  Score=36.88  Aligned_cols=30  Identities=13%  Similarity=0.117  Sum_probs=23.6

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      |.+-|+|+|++|+.+++.|++.+  |.+.+..
T Consensus         1 kHivI~G~g~~g~~l~~~L~~~~--i~vi~~d   30 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELRGSE--VFVLAED   30 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSCGGG--EEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHcCCC--CEEEEcc
Confidence            56889999999999999998765  4444443

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=90.10  E-value=0.21  Score=37.15  Aligned_cols=35  Identities=23%  Similarity=0.154  Sum_probs=30.6

Q ss_pred             CCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           83 GRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        83 g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      +|++.|-|. +.||+++|+.|..-|++|+..+|...
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~   36 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE   36 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            578888885 79999999999999999998887654

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=90.01  E-value=0.18  Score=35.72  Aligned_cols=35  Identities=20%  Similarity=0.245  Sum_probs=30.2

Q ss_pred             CCCEEEEEeC-ChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521           82 SGRSVGIIGL-GRIGMAVAKRAEAFGC-FISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~-G~IG~~va~~~~~fg~-~V~~~~r~~  116 (204)
                      .|.+|.|+|. |.+|...+..++..|. +|+..+++.
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~   63 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE   63 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccch
Confidence            5889999995 9999999999999995 777777654

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=89.93  E-value=0.21  Score=39.41  Aligned_cols=36  Identities=14%  Similarity=0.303  Sum_probs=32.0

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      +.|+|.|||.|-.|...|..|+.-|.+|+.+..+..
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            368999999999999999999988999998876553

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=89.90  E-value=0.095  Score=38.91  Aligned_cols=20  Identities=45%  Similarity=0.581  Sum_probs=17.8

Q ss_pred             CEEEEEeCChHHHHHHHHHh
Q 045521           84 RSVGIIGLGRIGMAVAKRAE  103 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~  103 (204)
                      .+|||=|||+|||.+.|.+-
T Consensus         3 ikigINGFGRIGR~vlR~~~   22 (190)
T d1k3ta1           3 IKVGINGFGRIGRMVFQALC   22 (190)
T ss_dssp             EEEEEECCSHHHHHHHHHHH
T ss_pred             eEEEEECCChHHHHHHHHHH
Confidence            37999999999999999763

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.85  E-value=0.21  Score=34.97  Aligned_cols=32  Identities=25%  Similarity=0.209  Sum_probs=26.0

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCC--EEEEEcCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGC--FISYRSRA  115 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~--~V~~~~r~  115 (204)
                      .+|+|||.|++|..+|-.+...+.  ++..+|..
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   34 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIA   34 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecc
Confidence            489999999999999998875554  67777764

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.85  E-value=0.31  Score=34.75  Aligned_cols=37  Identities=14%  Similarity=0.194  Sum_probs=31.2

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +|.|+||.+||= .++.+..+..+..||+++...++..
T Consensus         1 sl~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~   38 (163)
T d1pvva2           1 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEG   38 (163)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTT
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccc
Confidence            478999999994 4577888899999999999888753

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.73  E-value=0.28  Score=33.74  Aligned_cols=55  Identities=20%  Similarity=0.206  Sum_probs=39.4

Q ss_pred             CCEEEEEeCChHHHHHHHHH----hhcCCEEEEEcCCCCCCCCCCcceeCHH---HHHHHHHcCCc
Q 045521           83 GRSVGIIGLGRIGMAVAKRA----EAFGCFISYRSRAEKPNTKYKGALVDES---ELVSALLEDRL  141 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~----~~fg~~V~~~~r~~~~~~~~~G~lvd~~---aL~~aL~~g~i  141 (204)
                      .+++.|||-|-||-++|..+    +.+|.+|..+.+....-    +...|++   -+.+.|++..+
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l----~~~~~~~~~~~~~~~l~~~GV   98 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNM----GKILPEYLSNWTMEKVRREGV   98 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTT----TTTSCHHHHHHHHHHHHTTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCC----cccCCHHHHHHHHHHHHhCCc
Confidence            68999999999999998766    57899999888765543    2234544   35566665444

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.69  E-value=0.18  Score=39.81  Aligned_cols=38  Identities=24%  Similarity=0.344  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      +|.||++.|-|. +.||+++|+.|..-|++|+..++...
T Consensus         4 ~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~   42 (302)
T d1gz6a_           4 RFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGD   42 (302)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBC
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence            689999999996 56999999999999999999887643

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.60  E-value=0.25  Score=34.40  Aligned_cols=32  Identities=28%  Similarity=0.420  Sum_probs=26.2

Q ss_pred             CEEEEEeCChHHHHHHHHHh--hcCCEEEEEcCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAE--AFGCFISYRSRA  115 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~--~fg~~V~~~~r~  115 (204)
                      .+|.|||.|++|+.+|-.+.  .+.-++..+|..
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~   34 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD   34 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecc
Confidence            47999999999999998775  555688888865

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.45  E-value=0.24  Score=36.58  Aligned_cols=34  Identities=15%  Similarity=0.258  Sum_probs=29.2

Q ss_pred             EEEEEeCChHHHHHHHHHh--hcCCEEEEEcCCCCC
Q 045521           85 SVGIIGLGRIGMAVAKRAE--AFGCFISYRSRAEKP  118 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~--~fg~~V~~~~r~~~~  118 (204)
                      +|.|||-|..|...|..|.  .+|.+|+.+++.+.+
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~   38 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   38 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            7999999999999999874  579999998877643

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=89.24  E-value=0.14  Score=37.32  Aligned_cols=37  Identities=16%  Similarity=0.203  Sum_probs=30.9

Q ss_pred             cCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           81 ISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        81 l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      ..+.+|.|.| .|.+|+...+++|.+|++|++.+++++
T Consensus        30 ~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~   67 (177)
T d1o89a2          30 PQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRES   67 (177)
T ss_dssp             GGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGG
T ss_pred             CCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchh
Confidence            4556788877 499999999999999999998877654

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=89.14  E-value=0.38  Score=34.73  Aligned_cols=110  Identities=15%  Similarity=0.137  Sum_probs=64.2

Q ss_pred             ccccCCCEEEEEeCCh-HHHHHHHHHhhcCCEEEEEcCCCCCCCCC----C--------cceeCHHHHHHHHHcCCceEE
Q 045521           78 TTKISGRSVGIIGLGR-IGMAVAKRAEAFGCFISYRSRAEKPNTKY----K--------GALVDESELVSALLEDRLAAA  144 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~-IG~~va~~~~~fg~~V~~~~r~~~~~~~~----~--------G~lvd~~aL~~aL~~g~i~ga  144 (204)
                      +.++.||++.|||-+. +|+-++.+|..-|++|+.+.........+    +        -.+|+.+    .++.|.   .
T Consensus        32 ~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~l~~~~~~ADivI~a~G~p~~i~~~----~vk~g~---v  104 (166)
T d1b0aa1          32 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGD----WIKEGA---I  104 (166)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHHHHHHHCSEEEECSCCTTCBCTT----TSCTTC---E
T ss_pred             CcccccceEEEEeccccccHHHHHHHHHhhccccccccccchhHHHHhhhhHhhhhccCccccccc----ccCCCc---E
Confidence            4579999999999998 89999999999999998765543221000    0        2233322    233332   4


Q ss_pred             EeeCCCCCCCCCCCcCC---CC-----ceEEcccCCCCcHHHHHHHHHHHHHHHHHHHc
Q 045521          145 VLDVFEHEPQVPEELFG---LE-----NVVLLPHAASGTEETRKATADIVIENLEACFL  195 (204)
Q Consensus       145 ~lDV~~~EP~~~~~l~~---~~-----nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~  195 (204)
                      .+||--.. .....+..   .+     --.+||=.+|--.=+..-+.+.+++..+++.+
T Consensus       105 vIDvGi~~-~~~~~~~Gdvd~~~v~~~a~~~TPvPGGVGP~Tva~L~~N~v~a~~~~~~  162 (166)
T d1b0aa1         105 VIDVGINR-LENGKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYHD  162 (166)
T ss_dssp             EEECCCEE-CTTSCEECSBCHHHHHHHCSEECCSSSSSHHHHHHHHHHHHHHHHHHTTS
T ss_pred             EEecCcee-cCCCCEEeccccHhHHhheeEeCCCCCcccHHHHHHHHHHHHHHHHHHhC
Confidence            56654321 11112211   12     23799998888554445555555555555543

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.00  E-value=0.62  Score=32.77  Aligned_cols=53  Identities=21%  Similarity=0.122  Sum_probs=36.2

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcCCCCCCCCCCcceeCHHHHHHHHHcC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSRAEKPNTKYKGALVDESELVSALLED  139 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g  139 (204)
                      .+++|.|||-|++|-..|..+..+|++ |+.+.|.......     .....+..+..++
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~~~~-----a~~~~~~~a~~~~   97 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIR-----AVPEEVELAKEEK   97 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCC-----SCHHHHHHHHHTT
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChhhhc-----cchhheeeccccc
Confidence            467899999999999999999999987 5555554432211     2344555555544

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.98  E-value=0.084  Score=40.47  Aligned_cols=37  Identities=19%  Similarity=0.227  Sum_probs=31.0

Q ss_pred             ccCCCEEEEEeC-ChHHHHHHHHHhh---cCCEEEEEcCCC
Q 045521           80 KISGRSVGIIGL-GRIGMAVAKRAEA---FGCFISYRSRAE  116 (204)
Q Consensus        80 ~l~g~tvGIvG~-G~IG~~va~~~~~---fg~~V~~~~r~~  116 (204)
                      .|.||++.|-|. +.||+++|+.|..   -|++|+..+|+.
T Consensus         3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~   43 (259)
T d1oaaa_           3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSE   43 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCH
Confidence            588999888886 5799999999864   589999888864

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=88.95  E-value=0.25  Score=34.77  Aligned_cols=32  Identities=31%  Similarity=0.276  Sum_probs=26.6

Q ss_pred             CEEEEEeC-ChHHHHHHHHHhhcCC--EEEEEcCC
Q 045521           84 RSVGIIGL-GRIGMAVAKRAEAFGC--FISYRSRA  115 (204)
Q Consensus        84 ~tvGIvG~-G~IG~~va~~~~~fg~--~V~~~~r~  115 (204)
                      .+|+|||. |+||+.+|-.+...+.  ++..+|+.
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~   35 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGRE   35 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccch
Confidence            47999995 9999999999987664  78777765

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.89  E-value=0.3  Score=39.04  Aligned_cols=31  Identities=26%  Similarity=0.224  Sum_probs=27.9

Q ss_pred             CCEEEEEe-CChHHHHHHHHHhhcCCEEEEEc
Q 045521           83 GRSVGIIG-LGRIGMAVAKRAEAFGCFISYRS  113 (204)
Q Consensus        83 g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~  113 (204)
                      ||+|.|.| .|-||+.+++.|..-|.+|+++|
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            78999999 68999999999999999999886

>d1yoba1 c.23.5.1 (A:1-179) Flavodoxin {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Azotobacter vinelandii [TaxId: 354]

Probab=88.89  E-value=0.22  Score=36.31  Aligned_cols=62  Identities=18%  Similarity=0.261  Sum_probs=44.0

Q ss_pred             cccCCCEEEEEeCCh----------HHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCceEEEeeC
Q 045521           79 TKISGRSVGIIGLGR----------IGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDV  148 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~----------IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~ga~lDV  148 (204)
                      ..|+|++++|+|+|.          .++.+.++++..|+++++..+...-  .|.++        .|+..|+..|.+||.
T Consensus        84 ~~l~g~~~avfGlGDs~~~~~~Fc~a~~~l~~~l~~~GA~~iG~~~~~gy--~f~~s--------~a~~~~~f~GL~lD~  153 (179)
T d1yoba1          84 LDFSGKTVALFGLGDQVGYPENYLDALGELYSFFKDRGAKIVGSWSTDGY--EFESS--------EAVVDGKFVGLALDL  153 (179)
T ss_dssp             CCCTTCEEEEEEECCTTTCTTTTTHHHHHHHHHHHTTTCEEECCBCCTTC--CCSCC--------TTBSSSSBSSEEECT
T ss_pred             cccCCcEEEEEEecCCcccchhHHHHHHHHHHHHHhCCCeEeeccCCCCc--ccccc--------hhccCCceeeeeccc
Confidence            468999999999996          4789999999999999875432110  01011        245678888999995


Q ss_pred             CC
Q 045521          149 FE  150 (204)
Q Consensus       149 ~~  150 (204)
                      -.
T Consensus       154 dn  155 (179)
T d1yoba1         154 DN  155 (179)
T ss_dssp             TT
T ss_pred             cC
Confidence            43

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=88.84  E-value=0.2  Score=37.23  Aligned_cols=34  Identities=24%  Similarity=0.307  Sum_probs=30.6

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      ++|.|||-|-.|-..|..|+..|.+|+.+.++..
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~   34 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSAR   34 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            4799999999999999999999999999987654

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.79  E-value=0.55  Score=36.63  Aligned_cols=31  Identities=19%  Similarity=0.158  Sum_probs=28.2

Q ss_pred             CEEEEEe-CChHHHHHHHHHhhcCCEEEEEcC
Q 045521           84 RSVGIIG-LGRIGMAVAKRAEAFGCFISYRSR  114 (204)
Q Consensus        84 ~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r  114 (204)
                      |+|.|.| .|-||+.+++.|..-|-+|++.|+
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~   34 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN   34 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            7898988 799999999999999999999875

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=88.75  E-value=0.21  Score=36.52  Aligned_cols=30  Identities=27%  Similarity=0.240  Sum_probs=27.8

Q ss_pred             EEEEeCChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           86 VGIIGLGRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        86 vGIvG~G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      |.|||.|..|...|..+..+|++|..+.+.
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            789999999999999999999999888764

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=88.75  E-value=0.15  Score=36.75  Aligned_cols=35  Identities=20%  Similarity=0.111  Sum_probs=31.0

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +++.|.|||-|++|-..|..+..+|++|+.+.+..
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence            46789999999999999999999999998887543

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=88.61  E-value=0.35  Score=34.37  Aligned_cols=33  Identities=24%  Similarity=0.198  Sum_probs=23.9

Q ss_pred             CEEEEEeCChHHHH-HHHHHhhcC-CEEEE-EcCCC
Q 045521           84 RSVGIIGLGRIGMA-VAKRAEAFG-CFISY-RSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~-va~~~~~fg-~~V~~-~~r~~  116 (204)
                      -+|||||.|.||+. +.+.++.+. .++.+ .+|+.
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~   40 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDA   40 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCT
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecch
Confidence            48999999999986 568887664 35544 46553

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.44  E-value=0.38  Score=34.01  Aligned_cols=69  Identities=17%  Similarity=0.190  Sum_probs=45.3

Q ss_pred             cCCCEEEEEeC--ChHHHHHHHHHhhcCCEEEEEcCCCCCCCC------------CCcceeCHHHHHHHHHcCCceEEEe
Q 045521           81 ISGRSVGIIGL--GRIGMAVAKRAEAFGCFISYRSRAEKPNTK------------YKGALVDESELVSALLEDRLAAAVL  146 (204)
Q Consensus        81 l~g~tvGIvG~--G~IG~~va~~~~~fg~~V~~~~r~~~~~~~------------~~G~lvd~~aL~~aL~~g~i~ga~l  146 (204)
                      |.|++|.+||=  .++-+..+..+.-|||++....+..-....            ..+.+--++++.++++.-.+  ...
T Consensus         1 l~g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDv--iyt   78 (161)
T d1vlva2           1 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADV--VYT   78 (161)
T ss_dssp             STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSE--EEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhh--eec
Confidence            68999999994  589999999999999999988875321110            00333334556666665444  345


Q ss_pred             eCCCC
Q 045521          147 DVFEH  151 (204)
Q Consensus       147 DV~~~  151 (204)
                      |+|..
T Consensus        79 ~~~q~   83 (161)
T d1vlva2          79 DVWAS   83 (161)
T ss_dssp             CCCC-
T ss_pred             cceee
Confidence            66643

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.32  E-value=0.19  Score=38.29  Aligned_cols=32  Identities=25%  Similarity=0.279  Sum_probs=29.9

Q ss_pred             EEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .|.|||.|..|..+|..|+..|.+|..+++.+
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            59999999999999999999999999998765

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=88.30  E-value=0.35  Score=33.65  Aligned_cols=32  Identities=22%  Similarity=0.274  Sum_probs=27.2

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .+|.|||-|.+|-++|..|+. +.+|..+++.+
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~   32 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP   32 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence            479999999999999999976 67998887654

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=88.13  E-value=0.24  Score=36.14  Aligned_cols=32  Identities=28%  Similarity=0.291  Sum_probs=28.8

Q ss_pred             EEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      -|.|||.|..|...|..+..+|++|+.+++..
T Consensus         5 DvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           5 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            37899999999999999999999999987653

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.11  E-value=0.75  Score=35.50  Aligned_cols=33  Identities=18%  Similarity=0.079  Sum_probs=29.4

Q ss_pred             CEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      |++.|.| .|-||+.+++.|..-|.+|++++|..
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~   35 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRS   35 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCC
Confidence            6788888 69999999999999999999998753

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.10  E-value=0.61  Score=34.55  Aligned_cols=34  Identities=18%  Similarity=0.187  Sum_probs=30.3

Q ss_pred             EEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCCCC
Q 045521           85 SVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAEKP  118 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~~~  118 (204)
                      +|.|||.|-.|..+|..|+..|. +|..+.+++..
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~   37 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEI   37 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence            79999999999999999999996 88888886654

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=87.77  E-value=0.35  Score=36.15  Aligned_cols=36  Identities=17%  Similarity=0.165  Sum_probs=30.5

Q ss_pred             CCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCC
Q 045521           83 GRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKP  118 (204)
Q Consensus        83 g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~  118 (204)
                      +.+|.|.| -+.||+++|+.|..-|++|+..+|....
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~   38 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAND   38 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchh
Confidence            45677888 5899999999999999999999887654

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=87.67  E-value=0.28  Score=35.29  Aligned_cols=33  Identities=24%  Similarity=0.335  Sum_probs=29.2

Q ss_pred             EEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCCC
Q 045521           85 SVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAEK  117 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~~  117 (204)
                      +|.|||.|-.|...|..|+..|. +|+.+.++.+
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~   35 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDH   35 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCC
Confidence            58999999999999999999998 5998887654

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=87.61  E-value=0.32  Score=37.53  Aligned_cols=56  Identities=14%  Similarity=0.202  Sum_probs=41.0

Q ss_pred             EEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCC-------------CCC-CcceeCHHHHHHHHHcCC
Q 045521           85 SVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPN-------------TKY-KGALVDESELVSALLEDR  140 (204)
Q Consensus        85 tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~-------------~~~-~G~lvd~~aL~~aL~~g~  140 (204)
                      +|.|.| .|-||+.+++.|..-|.+|+++++..+..             ..+ .|.+-|.+.|.++++..+
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~   72 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYM   72 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcC
Confidence            577776 79999999999988899999887532211             011 188888888888887643

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.52  E-value=0.23  Score=36.06  Aligned_cols=38  Identities=13%  Similarity=0.124  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .-.|.+|.|.| -|.+|+...++++.+|++|+...++.+
T Consensus        29 ~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~   67 (176)
T d1xa0a2          29 TPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAA   67 (176)
T ss_dssp             CGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTT
T ss_pred             CCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchH
Confidence            34699999999 699999999999999999998877654

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.45  E-value=0.43  Score=35.42  Aligned_cols=38  Identities=24%  Similarity=0.328  Sum_probs=31.8

Q ss_pred             ccCCCEEEEEe-CChHHHHHHHHHhhcCC--EEEEEcCCCC
Q 045521           80 KISGRSVGIIG-LGRIGMAVAKRAEAFGC--FISYRSRAEK  117 (204)
Q Consensus        80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~--~V~~~~r~~~  117 (204)
                      .+.+|+|.|.| .|-||+.+++.|..-|.  +|+..+|++.
T Consensus        11 ~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~   51 (232)
T d2bkaa1          11 RMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKL   51 (232)
T ss_dssp             HHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChh
Confidence            46889999999 79999999999966664  8988888653

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=87.27  E-value=0.35  Score=37.98  Aligned_cols=35  Identities=20%  Similarity=0.214  Sum_probs=30.5

Q ss_pred             cCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           81 ISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        81 l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      -.||+|.|.| .|-||+.+++.|...|.+|.+..|+
T Consensus         9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~   44 (342)
T d1y1pa1           9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARS   44 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCC
Confidence            3699999999 5889999999998889999887664

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=87.26  E-value=0.39  Score=37.63  Aligned_cols=34  Identities=29%  Similarity=0.299  Sum_probs=28.2

Q ss_pred             CEEEEEeCChHHHHHHHHHhh--cCCEEEEEcCCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEA--FGCFISYRSRAEK  117 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~--fg~~V~~~~r~~~  117 (204)
                      |+|.|||.|.-|-..|..|+.  .+.+|..+.++..
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            689999999999999988854  4469988887643

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=87.02  E-value=0.53  Score=31.95  Aligned_cols=39  Identities=21%  Similarity=0.249  Sum_probs=34.6

Q ss_pred             ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +...+||+|.|+|-|+.+-.-|..|..+.-+|+.+.|..
T Consensus        25 ~~~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~   63 (126)
T d1fl2a2          25 GPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP   63 (126)
T ss_dssp             GGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSS
T ss_pred             hhhcCCceEEEEeCCHHHHHHHHhhhccCCceEEEeccc
Confidence            456789999999999999999999999999998877654

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.99  E-value=0.48  Score=35.38  Aligned_cols=36  Identities=28%  Similarity=0.440  Sum_probs=31.4

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      +-++|.|||.|--|-..|..|+..|.+|+.+..+.+
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r   39 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR   39 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            346799999999999999999999999999876543

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=86.69  E-value=0.46  Score=33.20  Aligned_cols=31  Identities=16%  Similarity=0.272  Sum_probs=25.1

Q ss_pred             CEEEEEe-CChHHHHHHHHHhhcCC--EEEEEcC
Q 045521           84 RSVGIIG-LGRIGMAVAKRAEAFGC--FISYRSR  114 (204)
Q Consensus        84 ~tvGIvG-~G~IG~~va~~~~~fg~--~V~~~~r  114 (204)
                      .+|+|+| .|+||+.+|-.+..-+.  ++..+|.
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di   34 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence            4899999 69999999999865444  6777775

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=86.56  E-value=0.36  Score=34.71  Aligned_cols=34  Identities=21%  Similarity=0.228  Sum_probs=24.8

Q ss_pred             CCEEEEEeCChHHHH-HHHHHhhcC--CEEEE-EcCCC
Q 045521           83 GRSVGIIGLGRIGMA-VAKRAEAFG--CFISY-RSRAE  116 (204)
Q Consensus        83 g~tvGIvG~G~IG~~-va~~~~~fg--~~V~~-~~r~~  116 (204)
                      .-++||||+|.+|+. .++.++.++  ++|.+ +|++.
T Consensus         3 kirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~   40 (181)
T d1zh8a1           3 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTR   40 (181)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSH
T ss_pred             CcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccH
Confidence            348999999999987 477777654  46654 56643

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=86.49  E-value=0.5  Score=33.10  Aligned_cols=32  Identities=31%  Similarity=0.367  Sum_probs=25.6

Q ss_pred             CEEEEEeC-ChHHHHHHHHHh---hcCCEEEEEcCC
Q 045521           84 RSVGIIGL-GRIGMAVAKRAE---AFGCFISYRSRA  115 (204)
Q Consensus        84 ~tvGIvG~-G~IG~~va~~~~---~fg~~V~~~~r~  115 (204)
                      .+|+|+|. |++|+.+|-.+.   ++.-++..+|..
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~   36 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA   36 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSS
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccc
Confidence            47999995 999999998763   466788888864

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.37  E-value=0.18  Score=35.33  Aligned_cols=29  Identities=34%  Similarity=0.373  Sum_probs=26.6

Q ss_pred             cCCCEEEEEeCChHHHHHHHHHhhcCCEE
Q 045521           81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFI  109 (204)
Q Consensus        81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V  109 (204)
                      -.||+|.|||-|.+|..+|..+..+|+++
T Consensus        27 ~~gkrVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          27 PVGNKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             CCCSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             ccCCceEEEcCchhHHHHHHHHHHcCCcc
Confidence            46899999999999999999999999864

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=86.30  E-value=0.44  Score=35.67  Aligned_cols=33  Identities=30%  Similarity=0.183  Sum_probs=27.6

Q ss_pred             CEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           84 RSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      |.|.|-|- +.||+++|+.|..-|++|+..+++.
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~   35 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRD   35 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            45677774 6799999999999999998888764

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=86.26  E-value=1.1  Score=33.71  Aligned_cols=54  Identities=22%  Similarity=0.216  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHhhHHHhcCCCCCCccccccCCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcCC
Q 045521           50 VADAAIGLTLAVLRRFVRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSRA  115 (204)
Q Consensus        50 vAE~~l~~~L~~~R~~~~~~~w~~~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r~  115 (204)
                      +|=-+++-+|+.+|-            .+..|++.++.++|.|.-|-.+|+++...+.+ ++.+|+.
T Consensus         5 TaaV~LAgll~a~~~------------~g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~   59 (222)
T d1vl6a1           5 TAVVVSAAFLNALKL------------TEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK   59 (222)
T ss_dssp             HHHHHHHHHHHHHHH------------HTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             HHHHHHHHHHHHHHH------------hCCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecce
Confidence            345577778888874            35679999999999999999999999888875 6667764

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.93  E-value=0.68  Score=34.26  Aligned_cols=25  Identities=28%  Similarity=0.454  Sum_probs=22.7

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHh
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAE  103 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~  103 (204)
                      ..+.|++|.|||-|+.+--+|+.+.
T Consensus        35 ~~~~gk~VvVIGgGNvAlD~AR~ll   59 (216)
T d1lqta1          35 PDLSGARAVVIGNGNVALDVARILL   59 (216)
T ss_dssp             CCCCSSEEEEECCSHHHHHHHHHHH
T ss_pred             ccccCceEEEECCCchhHhhhhhhc
Confidence            4678999999999999999999885

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.81  E-value=0.43  Score=34.83  Aligned_cols=32  Identities=28%  Similarity=0.332  Sum_probs=28.7

Q ss_pred             EEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      -|.|||.|..|...|..+...|++|..+++..
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~   38 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG   38 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            47899999999999999999999999887643

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.78  E-value=0.48  Score=33.80  Aligned_cols=32  Identities=13%  Similarity=0.092  Sum_probs=29.5

Q ss_pred             EEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           86 VGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        86 vGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      |-|||-|-.|...|..|...|.+|+.+.+...
T Consensus         8 viViGaG~~Gl~~A~~La~~G~~V~vlE~~~~   39 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGKKVLHIDKQDH   39 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence            78999999999999999999999999988654

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=85.76  E-value=0.47  Score=34.14  Aligned_cols=33  Identities=12%  Similarity=0.198  Sum_probs=27.4

Q ss_pred             CEEEEEeCChHHHHHHHHHhhc--CCEEEEEcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAF--GCFISYRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~f--g~~V~~~~r~~  116 (204)
                      ++|.|||-|.+|-++|..++.+  +.+|+.+.+..
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            4799999999999999999877  55787776643

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=85.54  E-value=0.64  Score=31.16  Aligned_cols=34  Identities=15%  Similarity=0.195  Sum_probs=29.9

Q ss_pred             CEEEEEeC----ChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           84 RSVGIIGL----GRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        84 ~tvGIvG~----G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      |+|.|||.    ++.|..+.+.|+.+|.+|+.+++...
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~   39 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYD   39 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCS
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccc
Confidence            78999995    68999999999999999998887654

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.51  E-value=0.45  Score=37.18  Aligned_cols=34  Identities=15%  Similarity=0.026  Sum_probs=29.9

Q ss_pred             CCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           82 SGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        82 ~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      .=|++.|.| .|-||+.+++.|...|.+|+++|+.
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~   49 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNF   49 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            447899988 7999999999999999999998763

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=85.44  E-value=0.42  Score=34.95  Aligned_cols=32  Identities=28%  Similarity=0.233  Sum_probs=28.7

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      ..|-|||.|..|...|..++.+|.+|..+.+.
T Consensus         6 ~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            45889999999999999999999999988753

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=85.42  E-value=0.47  Score=33.36  Aligned_cols=31  Identities=26%  Similarity=0.224  Sum_probs=27.9

Q ss_pred             EEEEEeCChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      -|.|||-|.+|-..|-.+..+|++|+.+.+.
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            3789999999999999999999999888754

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.29  E-value=0.59  Score=33.90  Aligned_cols=71  Identities=11%  Similarity=0.077  Sum_probs=47.4

Q ss_pred             ccCCCEEEEEeC--ChHHHHHHHHHhhcCCEEEEEcCCCCCCC-CC-----------CcceeCHHHHHHHHHcCCceEEE
Q 045521           80 KISGRSVGIIGL--GRIGMAVAKRAEAFGCFISYRSRAEKPNT-KY-----------KGALVDESELVSALLEDRLAAAV  145 (204)
Q Consensus        80 ~l~g~tvGIvG~--G~IG~~va~~~~~fg~~V~~~~r~~~~~~-~~-----------~G~lvd~~aL~~aL~~g~i~ga~  145 (204)
                      .|.|.||.+||=  -++.+.++..+..|||++.+.+|..-... .+           .+.+--.+++.++++.-.+  ..
T Consensus         2 ~l~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDv--Vy   79 (185)
T d1dxha2           2 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDF--VH   79 (185)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSE--EE
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhccccccE--EE
Confidence            488999999994  48999999999999999999988432111 00           0233333455666664443  45


Q ss_pred             eeCCCCC
Q 045521          146 LDVFEHE  152 (204)
Q Consensus       146 lDV~~~E  152 (204)
                      .|+|..+
T Consensus        80 t~~w~~~   86 (185)
T d1dxha2          80 TDVWVSM   86 (185)
T ss_dssp             ECCCSCS
T ss_pred             eehhhhh
Confidence            6777543

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.02  E-value=0.43  Score=34.31  Aligned_cols=35  Identities=14%  Similarity=-0.053  Sum_probs=30.9

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      ..+.|.|||-|..|...|..+..+|++|+.+++..
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~   38 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWM   38 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeec
Confidence            46899999999999999999999999998887543

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=84.96  E-value=0.33  Score=34.74  Aligned_cols=33  Identities=30%  Similarity=0.417  Sum_probs=25.7

Q ss_pred             CEEEEEeC-ChHHHHHHHHHhhc-CCEEE-EEcCCC
Q 045521           84 RSVGIIGL-GRIGMAVAKRAEAF-GCFIS-YRSRAE  116 (204)
Q Consensus        84 ~tvGIvG~-G~IG~~va~~~~~f-g~~V~-~~~r~~  116 (204)
                      -+|+|.|+ |+.|+++++.+... ++++. ++++..
T Consensus         5 ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~   40 (162)
T d1diha1           5 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREG   40 (162)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEeccc
Confidence            47999995 99999999998754 78874 455543

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.85  E-value=0.46  Score=33.87  Aligned_cols=71  Identities=15%  Similarity=0.189  Sum_probs=46.0

Q ss_pred             ccCCCEEEEEeCC-hHHHHHHHHHhhcCCEEEEEcCCCCCCC-CC-----------CcceeCHHHHHHHHHcCCceEEEe
Q 045521           80 KISGRSVGIIGLG-RIGMAVAKRAEAFGCFISYRSRAEKPNT-KY-----------KGALVDESELVSALLEDRLAAAVL  146 (204)
Q Consensus        80 ~l~g~tvGIvG~G-~IG~~va~~~~~fg~~V~~~~r~~~~~~-~~-----------~G~lvd~~aL~~aL~~g~i~ga~l  146 (204)
                      +|.|+||++||=| ++-+.+++.+.-|||++....+...... .+           .+.+...+++.++++.-.+.  ..
T Consensus         1 sl~gl~I~~vGD~~nV~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~advi--~~   78 (170)
T d1otha2           1 SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVL--IT   78 (170)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEE--EE
T ss_pred             CCCCCEEEEEcCchhHHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHHHhccCCEEEEEcCHHHHHhhhhhe--ee
Confidence            4789999999964 4556667777889999998887532211 00           04455566677777765543  34


Q ss_pred             eCCCCC
Q 045521          147 DVFEHE  152 (204)
Q Consensus       147 DV~~~E  152 (204)
                      |++..+
T Consensus        79 ~~~~~~   84 (170)
T d1otha2          79 DTWISM   84 (170)
T ss_dssp             CCSSCT
T ss_pred             eceecc
Confidence            666443

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.77  E-value=0.62  Score=36.04  Aligned_cols=31  Identities=16%  Similarity=0.236  Sum_probs=28.1

Q ss_pred             CEEEEEe-CChHHHHHHHHHhhcCCEEEEEcC
Q 045521           84 RSVGIIG-LGRIGMAVAKRAEAFGCFISYRSR  114 (204)
Q Consensus        84 ~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r  114 (204)
                      |+|.|.| .|-||+.+++.|..-|.+|+++++
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence            7899998 689999999999989999998875

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.66  E-value=0.29  Score=34.83  Aligned_cols=22  Identities=23%  Similarity=0.347  Sum_probs=18.7

Q ss_pred             CEEEEEeCChHHHHHHHHHhhc
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAF  105 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~f  105 (204)
                      .+|||||+|.+|+.-++.++..
T Consensus         8 ~kv~iIG~G~~g~~h~~~l~~~   29 (172)
T d1lc0a1           8 FGVVVVGVGRAGSVRLRDLKDP   29 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSH
T ss_pred             cEEEEEcCCHHHHHHHHHHHhC
Confidence            4899999999999988887643

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=84.32  E-value=0.54  Score=32.94  Aligned_cols=36  Identities=22%  Similarity=0.313  Sum_probs=32.4

Q ss_pred             cCCCEEEEEeC---ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           81 ISGRSVGIIGL---GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        81 l~g~tvGIvG~---G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      |.|+||++||=   +++.+.++..+..||+++....+..
T Consensus         2 l~gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~   40 (157)
T d1ml4a2           2 IDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPEL   40 (157)
T ss_dssp             SSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGG
T ss_pred             cCCCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccch
Confidence            78999999996   7899999999999999998887743

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.25  E-value=0.54  Score=34.10  Aligned_cols=30  Identities=30%  Similarity=0.346  Sum_probs=27.5

Q ss_pred             EEEEeCChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           86 VGIIGLGRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        86 vGIvG~G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      |-|||.|.+|...|..+..+|.+|..+++.
T Consensus         6 viIIG~GpaG~~aA~~aar~G~kV~vIEk~   35 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGARAAVVESH   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            789999999999999999999999888653

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=84.18  E-value=0.29  Score=36.55  Aligned_cols=34  Identities=18%  Similarity=0.209  Sum_probs=25.0

Q ss_pred             CCCEEEEEeCChHHH-HHHHHHhhc-CCEEE-EEcCC
Q 045521           82 SGRSVGIIGLGRIGM-AVAKRAEAF-GCFIS-YRSRA  115 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~-~va~~~~~f-g~~V~-~~~r~  115 (204)
                      +--+|||||+|.+|+ .+.+.++.. +++|. .+|++
T Consensus        32 ~~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~   68 (221)
T d1h6da1          32 RRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGN   68 (221)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSC
T ss_pred             CCEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCC
Confidence            445999999999997 466666655 77876 45664

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.03  E-value=0.92  Score=30.99  Aligned_cols=39  Identities=18%  Similarity=0.245  Sum_probs=34.7

Q ss_pred             ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCC
Q 045521           80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKP  118 (204)
Q Consensus        80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~  118 (204)
                      -.+||+|.|+|-|+-+-.-|..|..+--+|+.+.|..+.
T Consensus        31 ~frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~   69 (130)
T d1vdca2          31 IFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAF   69 (130)
T ss_dssp             GGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             HhCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccc
Confidence            458999999999999999999999999999988776543

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=83.93  E-value=0.24  Score=33.83  Aligned_cols=33  Identities=21%  Similarity=0.250  Sum_probs=24.4

Q ss_pred             CEEEEEeCChHHHHHHHHHh-hcCCEEEE-EcCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAE-AFGCFISY-RSRAE  116 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~-~fg~~V~~-~~r~~  116 (204)
                      .+|.|+|+|+.|+++++.+. .-++++.+ +|..+
T Consensus         4 ~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~   38 (126)
T d2dt5a2           4 WGLCIVGMGRLGSALADYPGFGESFELRGFFDVDP   38 (126)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCT
T ss_pred             ceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCch
Confidence            37999999999999998663 34678754 45433

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.80  E-value=0.84  Score=33.96  Aligned_cols=26  Identities=23%  Similarity=0.374  Sum_probs=23.5

Q ss_pred             cccCCCEEEEEeCChHHHHHHHHHhh
Q 045521           79 TKISGRSVGIIGLGRIGMAVAKRAEA  104 (204)
Q Consensus        79 ~~l~g~tvGIvG~G~IG~~va~~~~~  104 (204)
                      ..+.||+|.|||-|+++--+|+.|..
T Consensus        35 ~~~~gk~VvVIGgGNVAlD~aR~l~r   60 (225)
T d1cjca1          35 PDLSCDTAVILGQGNVALDVARILLT   60 (225)
T ss_dssp             CCTTSSEEEEESCSHHHHHHHHHHHS
T ss_pred             ccccCceEEEECCchhHHHHHHHHhc
Confidence            46789999999999999999999864

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=83.62  E-value=0.33  Score=36.69  Aligned_cols=36  Identities=22%  Similarity=0.189  Sum_probs=29.2

Q ss_pred             CCCEEEEEeC-ChHHHHHHHHHhhcCC--EEEEEcCCCC
Q 045521           82 SGRSVGIIGL-GRIGMAVAKRAEAFGC--FISYRSRAEK  117 (204)
Q Consensus        82 ~g~tvGIvG~-G~IG~~va~~~~~fg~--~V~~~~r~~~  117 (204)
                      +.|||.|-|. +.||+++|+.|..-|+  +|+..+|...
T Consensus         2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~   40 (250)
T d1yo6a1           2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVE   40 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGG
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHH
Confidence            5689999884 7899999999988886  6777777653

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.59  E-value=0.68  Score=33.92  Aligned_cols=32  Identities=31%  Similarity=0.278  Sum_probs=29.0

Q ss_pred             EEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      -|-|||-|..|...|..+..+|++|..++...
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~   36 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVT   36 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            47899999999999999999999999998644

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.48  E-value=0.82  Score=35.69  Aligned_cols=55  Identities=18%  Similarity=0.135  Sum_probs=39.7

Q ss_pred             CEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCC------------CC---CcceeCHHHHHHHHHc
Q 045521           84 RSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNT------------KY---KGALVDESELVSALLE  138 (204)
Q Consensus        84 ~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~------------~~---~G~lvd~~aL~~aL~~  138 (204)
                      |+|.|.| .|-||+.+++.|..-|.+|+++++......            .+   .+.+-|.+.|-.+++.
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~   72 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKE   72 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhc
Confidence            6777777 699999999999999999998875332210            11   1677777777777664

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=83.44  E-value=0.71  Score=34.01  Aligned_cols=32  Identities=28%  Similarity=0.307  Sum_probs=29.0

Q ss_pred             EEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           86 VGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        86 vGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      |.|||.|..|...|..|...|.+|+.+++...
T Consensus         5 ViIIGaG~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           5 VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            78999999999999999999999999987543

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.37  E-value=1.1  Score=35.98  Aligned_cols=54  Identities=20%  Similarity=0.279  Sum_probs=42.8

Q ss_pred             CCEEEEEeCChHHHHHHHHHhh------cCCEEEEEcCCCCCCCCC-CcceeCHHHHHHHH
Q 045521           83 GRSVGIIGLGRIGMAVAKRAEA------FGCFISYRSRAEKPNTKY-KGALVDESELVSAL  136 (204)
Q Consensus        83 g~tvGIvG~G~IG~~va~~~~~------fg~~V~~~~r~~~~~~~~-~G~lvd~~aL~~aL  136 (204)
                      .--|.|||-|.-|...|..|+.      -|++|+.+.+...+.... .|.+++..+|-+.+
T Consensus        32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~Ggvl~~~~l~~l~   92 (380)
T d2gmha1          32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELF   92 (380)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCccccccccHHHHHHHc
Confidence            4579999999999999998875      799999999876553332 28899988876654

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.28  E-value=0.38  Score=33.66  Aligned_cols=32  Identities=19%  Similarity=0.235  Sum_probs=25.4

Q ss_pred             CEEEEEeC-ChHHHHHHHHHhhcCC--EEEEEcCC
Q 045521           84 RSVGIIGL-GRIGMAVAKRAEAFGC--FISYRSRA  115 (204)
Q Consensus        84 ~tvGIvG~-G~IG~~va~~~~~fg~--~V~~~~r~  115 (204)
                      .+|+|||. |++|+.+|-.+..-+.  ++..+|..
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~   35 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA   35 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEecc
Confidence            48999995 9999999999986555  56667753

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.95  E-value=0.76  Score=31.40  Aligned_cols=36  Identities=22%  Similarity=0.230  Sum_probs=31.8

Q ss_pred             ccCCCEEEEEeC----------ChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           80 KISGRSVGIIGL----------GRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        80 ~l~g~tvGIvG~----------G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      .+.+++|+|+|+          ++-...+++.|...|++|.+|||.
T Consensus        10 ~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~   55 (136)
T d1mv8a3          10 SHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRN   55 (136)
T ss_dssp             TSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHH
T ss_pred             hcCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCC
Confidence            467899999998          567889999999999999999974

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=82.89  E-value=1.3  Score=33.92  Aligned_cols=48  Identities=15%  Similarity=0.102  Sum_probs=36.3

Q ss_pred             EEEEEeCChHHHHHHHHHh-----hcCCEEEEEcCCCCCCCCCCcceeCHHHH
Q 045521           85 SVGIIGLGRIGMAVAKRAE-----AFGCFISYRSRAEKPNTKYKGALVDESEL  132 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~-----~fg~~V~~~~r~~~~~~~~~G~lvd~~aL  132 (204)
                      -|.|||.|-.|..+|..|.     .-|.+|..+.+.+.+...-.|..+...++
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~~~r~~~l~~~~~   61 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTL   61 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCCcCCeEEEECHHHH
Confidence            5899999999999999995     46899999998765543333556665543

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=82.87  E-value=0.75  Score=35.81  Aligned_cols=35  Identities=20%  Similarity=0.217  Sum_probs=31.1

Q ss_pred             CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      +...|.|||.|..|-..|..|+..|.+|..+++..
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~   40 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAG   40 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCC
Confidence            45679999999999999999999999999887653

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=82.14  E-value=0.75  Score=34.34  Aligned_cols=32  Identities=22%  Similarity=0.111  Sum_probs=29.2

Q ss_pred             EEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      -|.|||-|-+|..+|..|..-|.+|+.+++..
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            48999999999999999999999999998753

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.01  E-value=0.93  Score=32.70  Aligned_cols=34  Identities=18%  Similarity=0.120  Sum_probs=28.0

Q ss_pred             CEEEEEeC-ChHHHHHHHHHhhcCC--EEEEEcCCCC
Q 045521           84 RSVGIIGL-GRIGMAVAKRAEAFGC--FISYRSRAEK  117 (204)
Q Consensus        84 ~tvGIvG~-G~IG~~va~~~~~fg~--~V~~~~r~~~  117 (204)
                      |+|.|.|. |-||+.+++.|..-|-  +|+...|++.
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~   39 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKAL   39 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCch
Confidence            89999996 9999999999987776  6776666543

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=81.90  E-value=1.1  Score=34.10  Aligned_cols=53  Identities=21%  Similarity=0.257  Sum_probs=40.5

Q ss_pred             CCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCc
Q 045521           83 GRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRL  141 (204)
Q Consensus        83 g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i  141 (204)
                      -|+|.|.| .|-||+.+++.|..-|-.|++.++..+      ..+.|.+++.+.++..++
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~~------~~~~~~~~~~~~~~~~~~   55 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDE------LNLLDSRAVHDFFASERI   55 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTT------CCTTCHHHHHHHHHHHCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCchh------ccccCHHHHHHHHhhcCC
Confidence            47899999 699999999999998998887765432      345677777777765443

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=81.77  E-value=0.77  Score=35.48  Aligned_cols=33  Identities=15%  Similarity=0.191  Sum_probs=29.5

Q ss_pred             EEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521           85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK  117 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~  117 (204)
                      .|.|||.|-.|..+|+.|+..|.+|+.+..+..
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~   35 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH   35 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            578999999999999999999999999887653

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=80.97  E-value=2  Score=29.39  Aligned_cols=35  Identities=11%  Similarity=0.143  Sum_probs=30.5

Q ss_pred             CCCEEEEEeC----ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           82 SGRSVGIIGL----GRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        82 ~g~tvGIvG~----G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      .-|+|.|||.    ++.|..+.+.|+.+|.++..+.+..
T Consensus        12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~   50 (136)
T d1iuka_          12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRF   50 (136)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGG
T ss_pred             CCCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEecc
Confidence            4689999997    7899999999999999998776543

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=80.70  E-value=0.89  Score=32.71  Aligned_cols=31  Identities=23%  Similarity=0.330  Sum_probs=28.0

Q ss_pred             EEEEEeCChHHHHHHHHHhhcCCEEEEEcCC
Q 045521           85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRA  115 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~  115 (204)
                      -|-|||.|..|...|..+..+|.+|..+.+.
T Consensus         5 DviVIG~GpaGl~aA~~aar~G~kV~vIEk~   35 (223)
T d1ebda1           5 ETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG   35 (223)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEecC
Confidence            4789999999999999999999999888654

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=80.45  E-value=0.92  Score=33.20  Aligned_cols=32  Identities=25%  Similarity=0.225  Sum_probs=28.9

Q ss_pred             EEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521           85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE  116 (204)
Q Consensus        85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~  116 (204)
                      -|-|||-|..|...|..+..+|.+|+.+.+..
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYK   39 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            47899999999999999999999999987643

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.39  E-value=0.62  Score=33.96  Aligned_cols=34  Identities=12%  Similarity=0.059  Sum_probs=28.1

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcC-------CEEEEEcCCCC
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFG-------CFISYRSRAEK  117 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg-------~~V~~~~r~~~  117 (204)
                      .+|.|||.|.-|-..|..|...|       ++|..|++.+.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence            58999999999999999886544       68988887653

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=80.38  E-value=0.4  Score=34.00  Aligned_cols=26  Identities=15%  Similarity=0.179  Sum_probs=22.9

Q ss_pred             CEEEEEeCChHHHHHHHHHhhcCCEE
Q 045521           84 RSVGIIGLGRIGMAVAKRAEAFGCFI  109 (204)
Q Consensus        84 ~tvGIvG~G~IG~~va~~~~~fg~~V  109 (204)
                      ++|.|||-|.+|-++|..|+.+|.++
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v   29 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQG   29 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCS
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCce
Confidence            45999999999999999999888664