Citrus Sinensis ID: 045523

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630----
NFTPIKFRPNSKIWDEVGESDNERDKMILEIEQECLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPKDNMYKIIEDEADLSEQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMVLGLDFKDTVCKIHPTLNDPKASKDVSNDTIEKMATTIQSLQEVKIQRMQKLQHLATSLVELWNLMDTPLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYVEGEVSRLEQLKSSKMKELVLKKKLELAEILRKMHTVTETVGDFSIEAIESGSMDFMDLLEQIDLQIAKAKEEASSRKEILEKVEKWFTAREEESWLEEYNRVRLISMLEDYSCMRQEKELERQRQKDHRKLQVQLIAEQEAIYGSKPSPSKSGRKTSTTLTGIASNRKLSLGGVMLQNLKPEKEALCVHSNKKIDGLYRNSPFGRPQSVSLAAGSGRRNSEIPGNVVNKSCSSVAAKARKVESKSARKPLSPVSLAISSKANIANFLEDKKRTHNGTSLKAVPSVAVTPSKQIVACNEGNKAPNTMPSVPKTPSTFTAPMLMAMTPATPCVSLGAKANERTGDKIEYSFEE
cccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccEEccccccccccccccccccccEEccccHcccccccccccccccccccccEEEEEEccc
nftpikfrpnskiwdevgesdneRDKMILEIEQECLAVYGRKIDDAKISRAQLLRAIALSEAEVADICStlgeqpghcdwtaggnlrdkLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIIsneicpkdnmykiIEDEADLSEQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMVLGldfkdtvckihptlndpkaskdvsNDTIEKMATTIQSLQEVKIQRMQKLQHLATSLVELWnlmdtpleeqEMFHNITSKIaalepeitepnflsmnnikyVEGEVSRLEQLKSSKMKELVLKKKLELAEILRKMHTVTETVGDFSIEAIESGSMDFMDLLEQIDLQIAKAKEEASSRKEILEKVEKWFTAREEESWLEEYNRVRLISMLEDYSCMRQEKELERQRQKDHRKLQVQLIAEQeaiygskpspsksgrktsttltgiasnrklslggvmlqnlkpekealcvhsnkkidglyrnspfgrpqsvslaagsgrrnseipgnvvnkSCSSVAAKARKVesksarkplspvsLAISSKANIANFLedkkrthngtslkavpsvavtpskqivacnegnkapntmpsvpktpstftapmlmamtpatpcvslgakanertgdkieYSFEE
nftpikfrpnskiwdevgesdnerdKMILEIEQECLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEqpghcdwtaggnlrdKLKTITPLLEDMRQRKIDRKNQFLQVLNQLqiisneicpkdnMYKIIEDEADLSEQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMVLGLDFKDTVCKIHptlndpkaskdvsNDTIEKMATTIQSLQEVKIQRMQKLQHLATSLVELWNLMDTPLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYVEGEVSRLEQLKSSKMKELVLKKKLELAEILRKMHTVTETVGDFSIEAIESGSMDFMDLLEQIDLQIAKAKEEASSRKEILEKVEKwftareeeswleeynRVRLISMLEDYSCMRQEKElerqrqkdhRKLQVQLIAEqeaiygskpspsksgrktsttltgiasnrklslGGVMLQNLKPEKEALCVHSNKKIDglyrnspfgrpQSVSLAagsgrrnseipgnvvnkscSSVAAKArkvesksarkplspvslaisSKANIANFLEDKKRthngtslkavpsvavtpsKQIVACNegnkapntmpsvpKTPSTFTAPMLMAMTPATPCVSLGAkanertgdkieysfee
NFTPIKFRPNSKIWDEVGESDNERDKMILEIEQECLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPKDNMYKIIEDEADLSEQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMVLGLDFKDTVCKIHPTLNDPKASKDVSNDTIEKMATTIQSLQEVKIQRMQKLQHLATSLVELWNLMDTPLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYVEGEVSRLEQlksskmkelvlkkklelaeilrkMHTVTETVGDFSIEAIESGSMDFMDLLEQIDLQIAKAKEEASSRKEILEKVEKWFTAREEESWLEEYNRVRLISMLEDYSCMRQEKELERQRQKDHRKLQVQLIAEQEAIYgskpspsksgrktsttLTGIASNRKLSLGGVMLQNLKPEKEALCVHSNKKIDGLYRNSPFGRPQSVSLAAGSGRRNSEIPGNVVNKSCSSVAAKARKVESKSARKPLSPVSLAISSKANIANFLEDKKRTHNGTSLKAVPSVAVTPSKQIVACNEGNKAPNTMPSVPKTPSTFTAPMLMAMTPATPCVSLGAKANERTGDKIEYSFEE
**************************MILEIEQECLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPKDNMYKIIED****************************KVMKHLSNVNSLCMVLGLDFKDTVCKIHPTL*******************TIQSLQEVKIQRMQKLQHLATSLVELWNLMDTPLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYVEGEVSR*********KELVLKKKLELAEILRKMHTVTETVGDFSIEAIESGSMDFMDLLEQIDLQIA***********ILEKVEKWFTAREEESWLEEYNRVRLISMLEDYSC*********************************************************LGGVMLQN******ALCVHSNKKIDGL**********************************************************************************************************************************************************
***PIKFRPNSKIWDEVGESDNERDKMILEIEQECLAVYGRKIDD*************LSEAEVADIC*****************LRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIIS*******************SEQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMV***********************DVSNDTIEKMATTIQSLQEVKIQRMQKLQHLATSLVELWNLMDTPLEEQEMFHN********************NNIKYVEGEVSRLE*L****MKELVLKKKLELAEILRKMHTVTETVGDFSIEAIESGSMDFMDLLEQIDLQIAKAKEEASSRKEILEKVEKWFTARE**************************************************************************************************************************************************************************************************************************************************************EYSF**
NFTPIKFRPNSKIWDEVGESDNERDKMILEIEQECLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPKDNMYKIIEDEADLSEQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMVLGLDFKDTVCKIHPTLNDPKASKDVSNDTIEKMATTIQSLQEVKIQRMQKLQHLATSLVELWNLMDTPLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYVEGEVSRLEQLKSSKMKELVLKKKLELAEILRKMHTVTETVGDFSIEAIESGSMDFMDLLEQIDLQIAK*********EILEKVEKWFTAREEESWLEEYNRVRLISMLEDYSCMRQ**************LQVQLIAEQEAIYG***************LTGIASNRKLSLGGVMLQNLKPEKEALCVHSNKKIDGLYRNSPFGRPQSVSLAAGSGRRNSEIPGNVVNKSCS*******************PVSLAISSKANIANFLEDKKRTHNGTSLKAVPSVAVTPSKQIVACNEGNKAPNTMPSVPKTPSTFTAPMLMAMTPATPCVSLGAKANERTGDKIEYSFEE
NFTPIKFRPNSKIWDEVGESDNERDKMILEIEQECLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQ********GGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICP**NMYKIIEDEADLSEQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMVLGLDFKDTVCKIHPTLNDPKASKDVSNDTIEKMATTIQSLQEVKIQRMQKLQHLATSLVELWNLMDTPLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYVEGEVSRLEQLKSSKMKELVLKKKLELAEILRKMHTVTETVGDFSIEAIESGSMDFMDLLEQIDLQIAKAKEEASSRKEILEKVEKWFTAREEESWLEEYNRVRLISMLEDYSCMRQEKELERQRQKDHRKLQVQLIAEQEAIYG***************************************************************************SEIPGNVVNKSCS****************************************************V****SKQIVAC*EGNKAPNTMPSVPKTPSTFTAPMLMAMTPATPCVSLGAKANERTGDKIEYSFE*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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NFTPIKFRPNSKIWDEVGESDNERDKMILEIEQECLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPKDNMxxxxxxxxxxxxxxxxxxxxxxxxxxxxKSSRLRKVMKHLSNVNSLCMVLGLDFKDTVCKIHPTLNDPKASKDVSNDTIEKMATTIQSLQEVKIQRMQKLQHLATSLVELWNLMDTPLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYVEGEVSRLEQLKSSKMKELVLKKKLELAEILRKMHTVTETVGDFSIEAIESGSMDFMDLLEQIDLQIAKAKEEASSRKEILEKVEKWFTAREEESWLEEYNRVRLISMLEDYSCMRQEKELERQRQKDHRKLQVQLIAEQEAIYGSKPSPSKSGRKTSTTLTGIASNRKLSLGGVMLQNLKPEKEALCVHSNKKIDGLYRNSPFGRPQSVSLAAGSGRRNSEIPGNVVNKSCSSVAAKARKVESKSARKPLSPVSLAISSKANIANFLEDKKRTHNGTSLKAVPSVAVTPSKQIVACNEGNKAPNTMPSVPKTPSTFTAPMLMAMTPATPCVSLGAKANERTGDKIEYSFEE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query634 2.2.26 [Sep-21-2011]
Q9LZY0677 65-kDa microtubule-associ yes no 0.933 0.874 0.450 1e-133
Q9FHM4707 65-kDa microtubule-associ no no 0.935 0.838 0.427 1e-121
Q9FLP0587 65-kDa microtubule-associ no no 0.586 0.633 0.469 9e-89
Q8LEG3578 65-kDa microtubule-associ no no 0.700 0.768 0.400 4e-88
Q8L836603 65-kDa microtubule-associ no no 0.690 0.726 0.375 8e-86
Q4PSA3549 65-kDa microtubule-associ no no 0.578 0.668 0.473 9e-83
Q9SIS3608 65-kDa microtubule-associ no no 0.662 0.690 0.372 9e-81
Q9C7G0562 65-kDa microtubule-associ no no 0.711 0.802 0.353 1e-79
Q9ZVJ3550 65-kDa microtubule-associ no no 0.659 0.76 0.382 6e-78
O43663620 Protein regulator of cyto yes no 0.652 0.667 0.231 3e-11
>sp|Q9LZY0|MA654_ARATH 65-kDa microtubule-associated protein 4 OS=Arabidopsis thaliana GN=MAP65-4 PE=1 SV=2 Back     alignment and function desciption
 Score =  474 bits (1221), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 310/688 (45%), Positives = 410/688 (59%), Gaps = 96/688 (13%)

Query: 7   FRPNSKIWDEVGESDNERDKMILEIEQECLAVYGRKIDDAKISRAQLLRAIALSEAEVAD 66
            R   +IW+E+GE+++E+D  + +IE+ECL+VY RK+++A   +A LL+ IA+  AE+A 
Sbjct: 20  LRQLQEIWNEMGETEDEKDASLADIEKECLSVYKRKVEEASRGKANLLKEIAVGRAEIAA 79

Query: 67  ICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEIC 126
           I S++G Q  H +   G NL+++L+ +   L+ +R+RK +R  +F +V++QL  +S ++ 
Sbjct: 80  IGSSMGGQEIHSNSRLGENLKEELENVNVQLDGLRKRKAERMIRFNEVIDQLLKLSLQLG 139

Query: 127 -PKDNMYKIIEDEADLSEQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMVLGLDF 185
            P D + K   +E DLS QRL+ELRSQL  LQ EKS RL +V   L  +NSLC VLG DF
Sbjct: 140 NPTDYLKKFAAEETDLSLQRLEELRSQLGELQNEKSKRLEEVECLLKTLNSLCSVLGEDF 199

Query: 186 KDTVCKIHPTLNDPKASKDVSNDTIEKMATTIQSLQEVKIQRMQKLQHLATSLVELWNLM 245
           K  +  IH +L D   ++DVS  T++K+   I +L+E K+QRMQK+Q LA SL+ELWNL+
Sbjct: 200 KGMIRGIHSSLVDSN-TRDVSRSTLDKLDMMIVNLREAKLQRMQKVQDLAVSLLELWNLL 258

Query: 246 DTPLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYVEGEVSRLEQLKSSKMKELVLKK 305
           DTP EEQ++FHN+T  IA  E EITE N LS+ +IK VE EV RL ++K +K+KE++L+K
Sbjct: 259 DTPAEEQKIFHNVTCSIALTESEITEANILSVASIKRVEDEVIRLSKIKITKIKEVILRK 318

Query: 306 KLELAEILRKMHTVTETVG--DFSIEAIESGSMDFMDLLEQIDLQIAKAKEEASSRKEIL 363
           +LEL EI RKMH  TE +   +FS+EAIESG  D   LLEQID +IAK KEEASSRKEIL
Sbjct: 319 RLELEEISRKMHMATEVLKSENFSVEAIESGVKDPEQLLEQIDSEIAKVKEEASSRKEIL 378

Query: 364 EKVEKWFTAREEESWLEEYNR--------------------VRLI--------------- 388
           EKVEKW +A EEESWLEEYNR                     RL+               
Sbjct: 379 EKVEKWMSACEEESWLEEYNRDDNRYNAGRGAHLTLKRAEKARLLVNKLPGMVEALTAKV 438

Query: 389 -------------------SMLEDYSCMRQEKELERQRQKDHRKLQVQLIAEQEAIYGSK 429
                              SML  Y  + +EKE E+QRQ+D +KL  QLI EQEA+YGSK
Sbjct: 439 TAWENERGNEFLYDGVRVLSMLGQYKTVWEEKEHEKQRQRDMKKLHGQLITEQEALYGSK 498

Query: 430 PSPSKSGRKTSTTLTGIASNRKLSLGGVML-QNLKPEKEALCVHSNKKIDGLYRNSPFGR 488
           PSP+KSG+K   T    A NRKLSLGG ML Q+LK EK  L    N K    Y  +   R
Sbjct: 499 PSPNKSGKKPLRTPVNAAMNRKLSLGGAMLHQSLKHEKATL----NSKRTKYYDQNATSR 554

Query: 489 PQSVSLAAGSGRRNSEIPGNVVNKSCSSVAAKARKVESKSARKPLSPVSLAISSKANIAN 548
             S +L   SGRRNSE+PG + +K+   VA KA +  S   RKPLSPV+      +NI N
Sbjct: 555 RDS-ALPTLSGRRNSELPGRIRSKNV-PVAGKAAR--SPMLRKPLSPVT------SNILN 604

Query: 549 FLEDKKRTHNGTSLKAVPSVAVTPSKQIVA--CNEGNKAPNTMPSVPKTPSTFTAPMLMA 606
             ED  +             A T  ++I+    NE  K      +VP TP+   A M  A
Sbjct: 605 SPEDHHKD------------AYTTKERILTPKTNEEKKR-----AVPTTPAASVA-MTEA 646

Query: 607 MTPATPCVSLGAKANERTGDKIEYSFEE 634
            TP TP V    K  +     +EYSFEE
Sbjct: 647 TTPFTPAVE---KRMDEEDVIVEYSFEE 671
Microtubule-associated protein involved in mitotic spindle formation.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9FHM4|MA653_ARATH 65-kDa microtubule-associated protein 3 OS=Arabidopsis thaliana GN=MAP65-3 PE=1 SV=1 Back     alignment and function description
>sp|Q9FLP0|MA651_ARATH 65-kDa microtubule-associated protein 1 OS=Arabidopsis thaliana GN=MAP65-1 PE=1 SV=1 Back     alignment and function description
>sp|Q8LEG3|MA652_ARATH 65-kDa microtubule-associated protein 2 OS=Arabidopsis thaliana GN=MAP65-2 PE=1 SV=1 Back     alignment and function description
>sp|Q8L836|MA657_ARATH 65-kDa microtubule-associated protein 7 OS=Arabidopsis thaliana GN=MAP65-7 PE=2 SV=1 Back     alignment and function description
>sp|Q4PSA3|MA659_ARATH 65-kDa microtubule-associated protein 9 OS=Arabidopsis thaliana GN=MAP65-9 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIS3|MA656_ARATH 65-kDa microtubule-associated protein 6 OS=Arabidopsis thaliana GN=MAP65-6 PE=1 SV=1 Back     alignment and function description
>sp|Q9C7G0|MA658_ARATH 65-kDa microtubule-associated protein 8 OS=Arabidopsis thaliana GN=MAP65-8 PE=1 SV=2 Back     alignment and function description
>sp|Q9ZVJ3|MA655_ARATH 65-kDa microtubule-associated protein 5 OS=Arabidopsis thaliana GN=MAP65-5 PE=1 SV=2 Back     alignment and function description
>sp|O43663|PRC1_HUMAN Protein regulator of cytokinesis 1 OS=Homo sapiens GN=PRC1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query634
113205145722 Putative microtubule-associated protein, 0.973 0.854 0.473 1e-153
356574793 735 PREDICTED: 65-kDa microtubule-associated 0.930 0.802 0.479 1e-148
255541326725 PLE, putative [Ricinus communis] gi|2235 0.955 0.835 0.478 1e-146
255544435724 Protein regulator of cytokinesis, putati 0.965 0.845 0.495 1e-144
225455563730 PREDICTED: 65-kDa microtubule-associated 0.958 0.832 0.476 1e-143
356535319729 PREDICTED: 65-kDa microtubule-associated 0.973 0.846 0.462 1e-142
356529347699 PREDICTED: 65-kDa microtubule-associated 0.943 0.855 0.454 1e-138
357504085729 Protein regulator of cytokinesis [Medica 0.970 0.843 0.454 1e-138
359489418725 PREDICTED: 65-kDa microtubule-associated 0.977 0.855 0.495 1e-137
147801443 1029 hypothetical protein VITISV_039795 [Viti 0.957 0.589 0.472 1e-132
>gi|113205145|gb|AAT40494.2| Putative microtubule-associated protein, identical [Solanum demissum] Back     alignment and taxonomy information
 Score =  550 bits (1416), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 332/701 (47%), Positives = 435/701 (62%), Gaps = 84/701 (11%)

Query: 13  IWDEVGESDNERDKMILEIEQECLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLG 72
           IWDEVGE D ERD+M+ EIE+ECL VY RK+D A  SRAQL +AIA SEAE+A ICS +G
Sbjct: 15  IWDEVGECDTERDRMLFEIERECLEVYRRKVDQANKSRAQLRQAIADSEAELAAICSAMG 74

Query: 73  EQPGH---CDWTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPKD 129
           E+P H    D + GG L+ +L+ + P LE+MR+RK DRKNQF++V+ Q+  I NEI  + 
Sbjct: 75  ERPVHIKQSDKSQGG-LKAELRAVLPELEEMRKRKSDRKNQFIEVMKQITKIKNEIY-RF 132

Query: 130 NMYKIIEDEADLSEQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMVLGLDFKDTV 189
               ++ DE+DLS ++L+EL ++L  LQ+EKS RL++V+ HL  +NSLC VLG+DFK T+
Sbjct: 133 TSASLVVDESDLSLRKLEELHTELHTLQKEKSERLKQVLNHLGTLNSLCSVLGMDFKHTI 192

Query: 190 CKIHPTLNDPKASKDVSNDTIEKMATTIQSLQEVKIQRMQKLQHLATSLVELWNLMDTPL 249
            ++ P L + + +K++ +DTI+ +A TIQ LQEVK+QRMQ+LQ L TS++ELWNLMDTP+
Sbjct: 193 NEVDPNLGESEEAKNICDDTIQNLAATIQRLQEVKLQRMQRLQDLTTSMLELWNLMDTPI 252

Query: 250 EEQEMFHNITSKIAALEPEITEPNFLSMNNIKYVEGEVSRLEQLKSSKMKELVLKKKLEL 309
           EEQ+MF N+T KIAA E EITEPN LSM  I YVE EV RLE+LK+SKMKELVLKKK EL
Sbjct: 253 EEQQMFQNVTCKIAAKEHEITEPNMLSMEFITYVEEEVDRLEELKASKMKELVLKKKSEL 312

Query: 310 AEILRKMHTVTETVG--DFSIEAIESGSMDFMD-LLEQIDLQIAKAKEEASSRKEILEKV 366
            EI RK H V ++ G  + +IEAIESG+++  D +LEQI+L+IA+ KEEA SRK+IL++V
Sbjct: 313 EEIYRKTHMVGDSDGAMNIAIEAIESGAVNDADAVLEQIELRIAQVKEEAFSRKDILDRV 372

Query: 367 EKWFTAREEESWLEEY----NR-------------------------------------- 384
           EKW  A EEE WLEEY    NR                                      
Sbjct: 373 EKWIAACEEECWLEEYNRDENRYNAGRGTHLTLKRAEKARALVNKLPAMVEALASKTKAW 432

Query: 385 ------------VRLISMLEDYSCMRQEKELERQRQKDHRKLQVQLIAEQEAIYGSKPSP 432
                       + L+SMLE+Y+ +R+EKELER++Q+D +KLQ QL+AEQE++YGSKPSP
Sbjct: 433 ENERGTQFSYDGIPLLSMLEEYTILREEKELERKKQRDQKKLQGQLMAEQESLYGSKPSP 492

Query: 433 -----SKSGRKTSTTLTGIASNRKLSLGGVMLQNLKPE-----KEALCVHSNKKIDGLYR 482
                +K G K S    G  SNR+LSLGG M Q  K E     K        KK +  ++
Sbjct: 493 MKNQSAKKGPKLSC--GGAPSNRRLSLGGTMQQTCKTELPHSTKATPNTRQAKKSERFHQ 550

Query: 483 NSPFGRPQSVSLAA-GSGRRNSEIPGNVVNKSCSSVAAKARKVESKSARKPLSPVSLAIS 541
              F  P +    A  +GRR       + +K     A    +VE+   RKP SP+S   S
Sbjct: 551 LDQFNHPTNDGFGALSAGRRGGLGIDELPSKKQPISALNGSEVETAVMRKPFSPISSKGS 610

Query: 542 SKANIANFLEDKKRTHNGTSLKAVPSVAV----TPSKQIVACNEGNKAP-NTMP-SVPKT 595
           SK+N  N L D  R HN + +K + S       TP K I  C E N+ P   MP  VP T
Sbjct: 611 SKSNATNILGDMNRKHNESMIKTLLSNHTTPVSTPVKSISTCEEENRTPAKAMPIPVPST 670

Query: 596 PSTFTAPMLMAMTPATPCVS-LGAKANERTG-DKIEYSFEE 634
           PST + PM    TP    V+   +K  E T  ++IEYSFEE
Sbjct: 671 PSTVSVPM-QTTTPGPAVVTPYNSKLVENTHVEEIEYSFEE 710

Source: Solanum demissum

Species: Solanum demissum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356574793|ref|XP_003555529.1| PREDICTED: 65-kDa microtubule-associated protein 3-like [Glycine max] Back     alignment and taxonomy information
>gi|255541326|ref|XP_002511727.1| PLE, putative [Ricinus communis] gi|223548907|gb|EEF50396.1| PLE, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255544435|ref|XP_002513279.1| Protein regulator of cytokinesis, putative [Ricinus communis] gi|223547653|gb|EEF49147.1| Protein regulator of cytokinesis, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225455563|ref|XP_002267584.1| PREDICTED: 65-kDa microtubule-associated protein 3 [Vitis vinifera] gi|296084125|emb|CBI24513.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356535319|ref|XP_003536194.1| PREDICTED: 65-kDa microtubule-associated protein 3-like [Glycine max] Back     alignment and taxonomy information
>gi|356529347|ref|XP_003533256.1| PREDICTED: 65-kDa microtubule-associated protein 3-like [Glycine max] Back     alignment and taxonomy information
>gi|357504085|ref|XP_003622331.1| Protein regulator of cytokinesis [Medicago truncatula] gi|355497346|gb|AES78549.1| Protein regulator of cytokinesis [Medicago truncatula] Back     alignment and taxonomy information
>gi|359489418|ref|XP_002273473.2| PREDICTED: 65-kDa microtubule-associated protein 3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147801443|emb|CAN77019.1| hypothetical protein VITISV_039795 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query634
TAIR|locus:2153152707 PLE "AT5G51600" [Arabidopsis t 0.902 0.809 0.379 1.6e-88
TAIR|locus:2167978549 MAP65-9 "microtubule-associate 0.585 0.675 0.431 1.3e-86
TAIR|locus:2116267578 MAP65-2 "AT4G26760" [Arabidops 0.586 0.643 0.427 5.7e-84
TAIR|locus:2006737603 MAP65-7 "AT1G14690" [Arabidops 0.594 0.625 0.387 3.2e-77
TAIR|locus:2059713608 ATMAP65-6 [Arabidopsis thalian 0.591 0.616 0.384 2.9e-76
MGI|MGI:1858961603 Prc1 "protein regulator of cyt 0.424 0.446 0.260 1.3e-12
UNIPROTKB|F1NGV8607 PRC1 "Uncharacterized protein" 0.416 0.434 0.239 1.7e-12
UNIPROTKB|F8W9B5566 PRC1 "Protein regulator of cyt 0.419 0.469 0.261 6.2e-12
UNIPROTKB|H9KV59606 PRC1 "Protein regulator of cyt 0.419 0.438 0.261 7.8e-12
UNIPROTKB|O43663620 PRC1 "Protein regulator of cyt 0.419 0.429 0.261 8.3e-12
TAIR|locus:2153152 PLE "AT5G51600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 884 (316.2 bits), Expect = 1.6e-88, P = 1.6e-88
 Identities = 226/595 (37%), Positives = 335/595 (56%)

Query:    13 IWDEVGESDNERDKMILEIEQECLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLG 72
             IWDEVGE++ +RD+M+LE+E+ECL VY RK+D A   RAQL +AIA +EA++A ICS +G
Sbjct:    26 IWDEVGETETDRDQMLLELERECLEVYRRKVDQANRCRAQLRQAIADAEAQLAAICSAMG 85

Query:    73 EQPGHCDWT--AGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPKDN 130
             E+P H   +  + G+L+ +L  I P LE+M++RK++R+NQF+ V+ Q+  I+N+I  +  
Sbjct:    86 ERPVHIRQSDQSVGSLKQELGRILPELEEMQKRKVERRNQFIVVMEQIDSITNDIKGQGE 145

Query:   131 MY--KIIEDEADLSEQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMVLGLDFKDT 188
             +   + + DE +LS ++L+EL  QL  LQ+EK  R+  + KHL  + S C VLG+DF + 
Sbjct:   146 LVHSEPLIDETNLSMRKLEELHCQLQVLQKEKIDRVETIRKHLCTLYSHCSVLGMDFNEV 205

Query:   189 VCKIHPTLNDPKASKDVSNDTIEKMATTIQSLQEVKIQRMQKLQHLATSLVELWNLMDTP 248
             V +++PTL+DP+  + +S+ TIEK+   +Q L EVKIQRMQ+LQ LAT+++ELWNLMDTP
Sbjct:   206 VGQVNPTLSDPEGPRSLSDHTIEKLGAAVQKLMEVKIQRMQRLQDLATTMLELWNLMDTP 265

Query:   249 LEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYVEGEVSRLEQXXXXXXXXXXXXXXXX 308
             +EEQ+ + +IT  IAA E EITE N LS + IKYVE EV RL++                
Sbjct:   266 IEEQQEYQHITCNIAASEHEITEANSLSEDFIKYVEAEVVRLDEVKASKMKELVLKKRSE 325

Query:   309 XXXXXXXMHT--VTETVGDFSIEAIESGSMDFMDLLEQIDLQIAKAKEEASSRKEILEKV 366
                     H   V+++  D +I AIESG +D   +LE ++  I+K KEEA SRKEILE+V
Sbjct:   326 LEEICRKTHLLPVSDSAIDQTIVAIESGIVDATMVLEHLEQHISKIKEEALSRKEILERV 385

Query:   367 EKWFTAREEESWLEEYNRVRLISMLEDYSCMRQEKELERQRQKDHRKLQVQLIAEQEAIY 426
             EKW +A +EESWLEEYNR         Y+  R    L  +R +  R L  +L    EA+ 
Sbjct:   386 EKWLSACDEESWLEEYNRDD-----NRYNAGRGA-HLTLKRAEKARNLVTKLPGMVEAL- 438

Query:   427 XXXXXXXXXXXXXXXXLTGIASNRKLSLGGVMLQNLKPEKEALCVHSNKKIDGLY---RN 483
                               GI     L    ++ Q  + E+E       KK+ G     + 
Sbjct:   439 ASKTIVWEQENGIEFLYDGIRLLSMLEEYNILRQ--EREEEHRRQRDQKKLQGQLIAEQE 496

Query:   484 SPFGRPQSVSLAAGSGRRNSEIPGNVVNKSCSSVAAKARKVE-SKSARKPLSPVSLAISS 542
             + +G   S S   G  +      G   N+  S  AA  +  + +K A    +  +L+   
Sbjct:   497 ALYGSKPSPSKPLGGKKAPRMSTGGASNRRLSLGAAMHQTPKPNKKADHRHNDGALSNGR 556

Query:   543 KA-NIANFLEDKKRTHNGTSLKAVPSVA--VTPSKQIVACNEGNKAPNTMPSVPK 594
             +  +IA  L  +K++ N + +   P V    +P    V  ++ N A  T   +PK
Sbjct:   557 RGLDIAG-LPSRKQSMNPSEMLQSPLVRKPFSPISTTVVASKANIATTTTQQLPK 610
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA;IMP
GO:0005874 "microtubule" evidence=IDA
GO:0009524 "phragmoplast" evidence=IDA
GO:0000226 "microtubule cytoskeleton organization" evidence=RCA;IMP
GO:0000280 "nuclear division" evidence=RCA;IMP
GO:0009624 "response to nematode" evidence=RCA;IMP
GO:0052096 "formation by symbiont of syncytium involving giant cell for nutrient acquisition from host" evidence=IMP
GO:0008017 "microtubule binding" evidence=IDA
GO:0009574 "preprophase band" evidence=IDA
GO:0046785 "microtubule polymerization" evidence=IDA
GO:0055028 "cortical microtubule" evidence=IDA
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0006275 "regulation of DNA replication" evidence=RCA
GO:0006342 "chromatin silencing" evidence=RCA
GO:0007000 "nucleolus organization" evidence=RCA
GO:0007067 "mitosis" evidence=RCA
GO:0007129 "synapsis" evidence=RCA
GO:0007131 "reciprocal meiotic recombination" evidence=RCA
GO:0008283 "cell proliferation" evidence=RCA
GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=RCA
GO:0010564 "regulation of cell cycle process" evidence=RCA
GO:0016572 "histone phosphorylation" evidence=RCA
GO:0042023 "DNA endoreduplication" evidence=RCA
GO:0045010 "actin nucleation" evidence=RCA
GO:0051225 "spindle assembly" evidence=RCA
GO:0051258 "protein polymerization" evidence=RCA
GO:0051567 "histone H3-K9 methylation" evidence=RCA
TAIR|locus:2167978 MAP65-9 "microtubule-associated protein 65-9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2116267 MAP65-2 "AT4G26760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006737 MAP65-7 "AT1G14690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2059713 ATMAP65-6 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:1858961 Prc1 "protein regulator of cytokinesis 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1NGV8 PRC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F8W9B5 PRC1 "Protein regulator of cytokinesis 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|H9KV59 PRC1 "Protein regulator of cytokinesis 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|O43663 PRC1 "Protein regulator of cytokinesis 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LZY0MA654_ARATHNo assigned EC number0.45050.93370.8744yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00038478001
SubName- Full=Chromosome chr16 scaffold_94, whole genome shotgun sequence; (730 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query634
pfam03999619 pfam03999, MAP65_ASE1, Microtubule associated prot 6e-58
>gnl|CDD|217835 pfam03999, MAP65_ASE1, Microtubule associated protein (MAP65/ASE1 family) Back     alignment and domain information 
 Score =  205 bits (523), Expect = 6e-58
 Identities = 131/636 (20%), Positives = 225/636 (35%), Gaps = 104/636 (16%)

Query: 23  ERDKMILEIEQECLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTA 82
            ++  + +I+    +      +++   +  +L+ IA+  AE+  + +  G +    +   
Sbjct: 1   LQNLNLADIKIHYSSFEKDLKEESSTKKQAILKDIAVLRAEIKRLSAENGIEQDISNSLL 60

Query: 83  GGNLRDKLKTITPL------------------LEDMRQRKIDRKNQFLQVLNQLQIISNE 124
                  L     L                  LE +R++K +R+ +  ++L+QL  + NE
Sbjct: 61  HKEPLQLLSEKDILQRPKSFPLGVWLLKLRDQLESLRKQKAERRAEIKELLHQLLQLCNE 120

Query: 125 IC-PKDNMYKIIEDEADLS-EQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMVLG 182
           +  P  ++ +   D   L   + L+  R +L  L+EEK  RL +V     ++ SLC +LG
Sbjct: 121 LGEPPLSLLRKDADPLSLPNLEELEHFRERLGELREEKVRRLEEVDSLKQSIKSLCSLLG 180

Query: 183 LDFKDTVC-KIHPTLNDPKASKDVSNDTIEKMATTIQSLQEVKIQRMQKLQHLATSLVEL 241
                T   +   +  +      V+ +TI+K+   +++L   K QR  K+  L   + EL
Sbjct: 181 TPPARTDFEQDVLSYGEIPNDHCVTRETIDKLDKMLENLAAQKKQRADKIDDLREQIQEL 240

Query: 242 WNLMDTPLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYVEGEVSRLEQLKSSKMKEL 301
           WN +    EEQ+ F             + E   LS  +IK +E EV RLE LK   +K+ 
Sbjct: 241 WNRLQISDEEQKRF-------------VREATILSQESIKRLEEEVERLEALKKQNLKKF 287

Query: 302 VLKKKLELAEILRKMHTVTETVGDFSIEAIESGSMDFMDLLEQIDLQIAKAKEEASSRKE 361
           +   ++E+ E+   +    E    F+    E  +     LLEQ + +I + KEE SS KE
Sbjct: 288 IEDLRIEIQELWDLLFYSEEQRKSFTPYYEELYTEQ---LLEQHENEIKRLKEEYSSNKE 344

Query: 362 ILEKVEKWFTAREEESWLEEYNR------------------------------------- 384
           ILE +EKW +  E    LE                                         
Sbjct: 345 ILELIEKWESLWERMEELEAKANDPNRFNNRGGHLLKEEKERKRLTRKLPKVEEQLTAKV 404

Query: 385 ---------------VRLISMLEDYSCMRQEKELERQRQKDHRKLQVQLIAEQEAIYGSK 429
                          V L+  +       +    E+QR K  +KL  +     E  YGS 
Sbjct: 405 TAWEGEFGTPFLVHGVPLLERMAQIEAQWERHRQEKQRAKARKKLANKTSTVMEPPYGST 464

Query: 430 PSPSKSGRKTSTTLTGIASNRKLSLGGVMLQNLKPEKEALCVHSNKKIDGLYRNSPFGRP 489
            S   S   T      I SN         L      +EA       K  G        R 
Sbjct: 465 ESSVPSTPSTRRNDRNITSNTPSLKRTPNLTKSSLSQEAS---LISKSTGNTHKHSTPRR 521

Query: 490 QSVSLAAGSGRRNSEIPGNVVNKSCSSVAAKARKVESKSARKPLSPVSLAISSKANIANF 549
            + +L        S     + + +       +  + S  +    SP       +      
Sbjct: 522 LT-TLPKLPAASRSSKGNLIRSGANG---NASSDLSSPGSINSKSPEHSVPLVR-VFDIH 576

Query: 550 LEDKK-------RTHNGTSLKAVPSVAVTPSKQIVA 578
           L            + N    + +    ++P K+ VA
Sbjct: 577 LRASTTKGRHSTPSTNEKKKRLLKRSPLSPPKESVA 612

Length = 619

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 634
KOG4302660 consensus Microtubule-associated protein essential 100.0
PF03999619 MAP65_ASE1: Microtubule associated protein (MAP65/ 100.0
PF03999619 MAP65_ASE1: Microtubule associated protein (MAP65/ 99.93
KOG4302660 consensus Microtubule-associated protein essential 99.91
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 95.37
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 95.2
PHA02562562 46 endonuclease subunit; Provisional 95.18
KOG09961293 consensus Structural maintenance of chromosome pro 94.96
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 94.1
PRK04778569 septation ring formation regulator EzrA; Provision 93.93
TIGR021691164 SMC_prok_A chromosome segregation protein SMC, pri 93.16
PRK02224 880 chromosome segregation protein; Provisional 92.9
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 92.63
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 91.76
PLN031881320 kinesin-12 family protein; Provisional 91.72
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 91.72
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 91.61
PF121281201 DUF3584: Protein of unknown function (DUF3584); In 90.67
PF10146230 zf-C4H2: Zinc finger-containing protein ; InterPro 90.05
PF135141111 AAA_27: AAA domain 90.0
TIGR021691164 SMC_prok_A chromosome segregation protein SMC, pri 89.99
PRK11637428 AmiB activator; Provisional 89.54
PRK04863 1486 mukB cell division protein MukB; Provisional 89.43
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 89.12
KOG09331174 consensus Structural maintenance of chromosome pro 89.1
KOG10291118 consensus Endocytic adaptor protein intersectin [S 87.86
PRK11637428 AmiB activator; Provisional 87.62
PF00038312 Filament: Intermediate filament protein; InterPro: 87.4
COG5185622 HEC1 Protein involved in chromosome segregation, i 87.09
PF15070617 GOLGA2L5: Putative golgin subfamily A member 2-lik 86.48
PF121281201 DUF3584: Protein of unknown function (DUF3584); In 85.68
cd07664234 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of S 85.38
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 85.14
PF122521439 SidE: Dot/Icm substrate protein; InterPro: IPR0210 84.49
PF06160560 EzrA: Septation ring formation regulator, EzrA ; I 83.44
COG11961163 Smc Chromosome segregation ATPases [Cell division 83.44
TIGR03007498 pepcterm_ChnLen polysaccharide chain length determ 83.02
PF122521439 SidE: Dot/Icm substrate protein; InterPro: IPR0210 80.21
PF15254861 CCDC14: Coiled-coil domain-containing protein 14 80.04
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-92  Score=789.28  Aligned_cols=570  Identities=41%  Similarity=0.569  Sum_probs=478.3

Q ss_pred             hhhhHHHHHHHHhhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC-C-
Q 045523            3 TPIKFRPNSKIWDEVGESDNERDKMILEIEQECLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCD-W-   80 (634)
Q Consensus         3 ~~~lL~eLq~IWdEIG~~e~eRd~ml~~lEqecl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~-~-   80 (634)
                      +++++.+|+.|||+||+++++||+++..|+++|+++|+++|+++...+++|+++|+++++++..||++||++++... . 
T Consensus        16 ~~~~~~eL~~IW~~igE~~~e~d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~   95 (660)
T KOG4302|consen   16 CGNLLNELQKIWDEIGESETERDKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISD   95 (660)
T ss_pred             HHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999987655 1 


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-CCccccCCCCCCHHHHHHHHHHHHHHHHH
Q 045523           81 TAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPKDN-MYKIIEDEADLSEQRLKELRSQLAYLQEE  159 (634)
Q Consensus        81 ~~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL~~~~~-~~~~~~d~~dLS~e~LeeLk~~L~~LqkE  159 (634)
                      ...+||++++..|.+.|+.|+++|++|+++|.++..||+.||.+|||... +..+.+|..|||+++|++|+.+|.+|++|
T Consensus        96 k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~e  175 (660)
T KOG4302|consen   96 KIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKE  175 (660)
T ss_pred             ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHH
Confidence            26789999999999999999999999999999999999999999999832 33345789999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhccCCCCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523          160 KSSRLRKVMKHLSNVNSLCMVLGLDFKDTVCKIHPTLNDPKA--SKDVSNDTIEKMATTIQSLQEVKIQRMQKLQHLATS  237 (634)
Q Consensus       160 Ks~Rl~kv~el~~~I~~L~~eLg~df~~~v~evhpsl~d~~~--s~~LS~~~L~~L~~~l~~LeeeK~~R~~kl~~L~~~  237 (634)
                      |..|+++|.+++.+|+.||.+||++|..++.++||+|.+..+  +++||+++|++|+..+..|+++|.+|++++++|+.+
T Consensus       176 k~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~~~k~qr~~kl~~l~~~  255 (660)
T KOG4302|consen  176 KSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLKEEKKQRLQKLQDLRTK  255 (660)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999987655  899999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCHHHHHHHHhhhccccCCcccccCCCcCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcC
Q 045523          238 LVELWNLMDTPLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYVEGEVSRLEQLKSSKMKELVLKKKLELAEILRKMH  317 (634)
Q Consensus       238 L~eLW~~L~ip~eEr~~F~~~~~~i~~S~~ei~~~~~LS~~tI~~le~EVeRLeeLK~~~mkeLI~k~R~ELeeLWdk~~  317 (634)
                      |.+|||+|++|+|||..|.+++      ++|+|.+++||.++|.+++.||.||++||+++||+||+++|.||++||+.+|
T Consensus       256 ~~~LWn~l~ts~Ee~~~f~~~t------~~e~t~~~~ls~d~I~~ve~Ev~Rl~qlK~s~mKeli~k~r~Eleel~~~~h  329 (660)
T KOG4302|consen  256 LLELWNLLDTSDEERQRFVHVT------ESEATEPNSLSLDIIEQVEKEVDRLEQLKASNMKELIEKKRSELEELWRLLH  329 (660)
T ss_pred             HHHHHHhccCCHHHHHHHcccc------HHHhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999887      8899999999999999999999999999999999999999999999999999


Q ss_pred             CCh--hhhhhhhhHhhhcCCCCHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhhhhHHHHhhc-----------
Q 045523          318 TVT--ETVGDFSIEAIESGSMDFMDLLEQIDLQIAKAKEEASSRKEILEKVEKWFTAREEESWLEEYNR-----------  384 (634)
Q Consensus       318 ~s~--eer~~F~~~~idsg~~D~EeLL~~~E~EI~rLKe~~~srK~Ile~Vekw~sl~eEe~wLeEynr-----------  384 (634)
                      |+.  ++|..|++.++|+|.+|+.++|+.+|.+|.++|+++.+||+|+++|++|++||+++.||++|||           
T Consensus       330 ~s~~~e~~~~f~~~~~ds~~~d~~ell~~~d~~i~k~keea~srk~il~~ve~W~sa~EeE~~lee~n~D~nR~~~~Rg~  409 (660)
T KOG4302|consen  330 YSEENESRRRFITYLIDSGTEDVLELLENIDNLIKKYKEEALSRKEILERVEKWESACEEESWLEEYNRDSNRYNAGRGA  409 (660)
T ss_pred             ccccHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccchhhhHhccccc
Confidence            999  8899999999999999999999999999999999999999999999999999999999999983           


Q ss_pred             -------------------------------------------hhHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 045523          385 -------------------------------------------VRLISMLEDYSCMRQEKELERQRQKDHRKLQVQLIAE  421 (634)
Q Consensus       385 -------------------------------------------~rLl~~lee~~~~r~eKEeEK~r~R~~Kk~q~ql~~e  421 (634)
                                                                 +||+.|+++|..||++||+||+|+|++||+++|+.++
T Consensus       410 h~lLkreekar~~vsKlP~~~~~L~~k~~~wE~e~~~~FL~~g~~ll~m~~e~~~~r~~ke~~k~r~rd~kk~s~q~~~~  489 (660)
T KOG4302|consen  410 HLLLKREEKARKLVSKLPKMVEALTAKVTAWEEEKGRPFLVDGVPLLEMLEEYEEHRQEKEQEKARQRDQKKTSGQLKPE  489 (660)
T ss_pred             hhHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCCceeecCccHHHHHHHHHHHHHHHHHHHHhcccccccccccCcc
Confidence                                                       7899999999999999999999999999999999999


Q ss_pred             hhhcccCCCCCCC--CCCCCCCCCCCCCCCcccccccccccCCCchhhhhhhccccccCCcccCCCCCCCCccccccCCC
Q 045523          422 QEAIYGSKPSPSK--SGRKTSTTLTGIASNRKLSLGGVMLQNLKPEKEALCVHSNKKIDGLYRNSPFGRPQSVSLAAGSG  499 (634)
Q Consensus       422 ~e~~~Gs~psp~~--~~rk~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  499 (634)
                      ++..|||+|||++  +.||..+.+++  ++.+++.|+++.+.+.+...+++              .-++++.+      +
T Consensus       490 ~~~~~~sk~sp~~p~s~rk~~~~~t~--~~~~~~~~ps~~~~s~~~~~~s~--------------~~~~~~~s------~  547 (660)
T KOG4302|consen  490 QEGRYGSKPSPSKPNSPRKNRGRSTP--PNGSLSKTPSKRPLSGGNSAAST--------------QNRTTPLS------P  547 (660)
T ss_pred             ccccccCCCCCCCCCccccCCCCCCC--CCCCCCCCCccCcCCCCCCCCCc--------------ccCCCCCC------c
Confidence            9999999999985  56666555543  35555555444432222211111              00111111      3


Q ss_pred             CCCCCCCCCcccccccchhhhhhhhcccccCCCCCCcchh-hhhhhhhhhhhhhhhhccccCccccCCCcccCCcccccc
Q 045523          500 RRNSEIPGNVVNKSCSSVAAKARKVESKSARKPLSPVSLA-ISSKANIANFLEDKKRTHNGTSLKAVPSVAVTPSKQIVA  578 (634)
Q Consensus       500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  578 (634)
                      |++...+..|.++...   .+...+.|+...++.++.+.+ .-++.|+.++.-....     ...  ....-++..+.++
T Consensus       548 r~~~~~st~p~n~~~~---~~~~~l~s~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~--~~~~~s~~~s~~~  617 (660)
T KOG4302|consen  548 RRLRASSTTPANKVAR---QKIESLNSNNSSPASSSLSTSQTHSQLNVEKSTIFLVP-----SDH--ETCSRSGRSSTGT  617 (660)
T ss_pred             ccccCCCCCCchhhhc---ccccccccCCCCCccCCCCCCCCccccccccccccccc-----Ccc--hhhccCCCCCccc
Confidence            7777777777776654   333335555555555555544 2445555544422110     000  0011112222222


Q ss_pred             ccccC--------CCCCCCC---CCCCCCccccccccccccCC
Q 045523          579 CNEGN--------KAPNTMP---SVPKTPSTFTAPMLMAMTPA  610 (634)
Q Consensus       579 ~~~~~--------~~~~~~~---~~~~~~~~~~~~~~~~~~~~  610 (634)
                      -.-++        .+|++..   ++|++|..||++|.++.||.
T Consensus       618 r~~~~~r~~~~~~~~~~~s~k~~~~~~~~~~ss~~~~~~p~~~  660 (660)
T KOG4302|consen  618 RNSEKKRLLSKSSSSPDTSGKLNSPPNEPEFSSYELSKSPTFL  660 (660)
T ss_pred             cchhhhcccchhccCCchhhhhcCCCCCccccccccccCCCCC
Confidence            11111        2344442   78999999999999999984

>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins Back     alignment and domain information
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins Back     alignment and domain information
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PLN03188 kinesin-12 family protein; Provisional Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF13514 AAA_27: AAA domain Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2 Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria Back     alignment and domain information
>PF15254 CCDC14: Coiled-coil domain-containing protein 14 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query634
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
3nrx_A130 Protein regulator of cytokinesis 1; spectrin fold, 5e-08
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-05
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-04
1sjj_A863 Actinin; 3-helix bundle, calponin homology domain, 2e-04
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 4e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 84.5 bits (208), Expect = 4e-17
 Identities = 87/555 (15%), Positives = 166/555 (29%), Gaps = 198/555 (35%)

Query: 8   RPNSK-IWDEVGESDNERDKMILEIEQECLAVY--GRKIDDAKISRAQLLRAI--ALSEA 62
           R N K +   +     +   M     ++   +Y   +      +SR Q    +  AL E 
Sbjct: 88  RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147

Query: 63  EVADICSTLGEQPGHC--DWTAGGNLRDKLKTITPLLED----MRQRKIDRKNQFLQVLN 116
             A      G   G     W A          +   ++     +  +  +     L++L 
Sbjct: 148 RPAKNVLIDG-VLG-SGKTWVALDVCLSY--KVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203

Query: 117 QL--QIISNEICPKDNMYKIIEDEADLSEQRLKELRSQLAYLQEEKSSRLRKVMKHLSNV 174
           +L  QI  N     D+   I        + R+  +++            LR+++K     
Sbjct: 204 KLLYQIDPNWTSRSDHSSNI--------KLRIHSIQA-----------ELRRLLKSKPYE 244

Query: 175 NSLCMVL----------GLDFKDTVCKIHPTLNDPKASKDVSNDTIEKMATTIQSLQEVK 224
           N L +VL            +     CKI  T       K V++       T I       
Sbjct: 245 NCL-LVLLNVQNAKAWNAFNLS---CKILLTTRF----KQVTDFLSAATTTHI------- 289

Query: 225 IQRMQKLQHLATSLVELWNLMDTPLEEQEMFHNITS-KIAALEPEI--TEPNFLSM---- 277
                 L H + +L        TP E + +       +   L  E+  T P  LS+    
Sbjct: 290 -----SLDHHSMTL--------TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336

Query: 278 --------NNIKYVEG-------EVSRLEQLKSSKMKELVLKKKLELAEILRKMHTVTET 322
                   +N K+V         E S L  L+ ++ +++       L+ +      +   
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESS-LNVLEPAEYRKMF----DRLS-VFPPSAHIPTI 390

Query: 323 VGDFSI---EAIESGSMDFMD------LLEQ--------I-DLQI---AKAKEEASSRKE 361
           +   S+   + I+S  M  ++      L+E+        I  + +    K + E +  + 
Sbjct: 391 L--LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448

Query: 362 ILEKVEK-----------------WF--------TAREEE------------SWLEEYNR 384
           I++                     ++             E             +LE   +
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE--QK 506

Query: 385 VR-----------LISMLED------YSCMRQEKELERQ----------------RQKDH 411
           +R           +++ L+       Y C   + + ER                   K  
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYIC-DNDPKYERLVNAILDFLPKIEENLICSKYT 565

Query: 412 RKLQVQLIAEQEAIY 426
             L++ L+AE EAI+
Sbjct: 566 DLLRIALMAEDEAIF 580
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3nrx_A Protein regulator of cytokinesis 1; spectrin fold, microtubule binding domain, protein binding; 1.75A {Homo sapiens} PDB: 3nry_A Length = 130 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query634
3nrx_A130 Protein regulator of cytokinesis 1; spectrin fold, 99.48
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 85.22
>3nrx_A Protein regulator of cytokinesis 1; spectrin fold, microtubule binding domain, protein binding; 1.75A {Homo sapiens} PDB: 3nry_A Back     alignment and structure
Probab=99.48  E-value=6.2e-14  Score=129.05  Aligned_cols=75  Identities=27%  Similarity=0.352  Sum_probs=66.3

Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHhhhhhHHHHhhc---------------------------------------------
Q 045523          350 AKAKEEASSRKEILEKVEKWFTAREEESWLEEYNR---------------------------------------------  384 (634)
Q Consensus       350 ~rLKe~~~srK~Ile~Vekw~sl~eEe~wLeEynr---------------------------------------------  384 (634)
                      ++|+++|++||+||++|++|..+|.+...|++|++                                             
T Consensus         3 ~rLk~~y~~~k~Ile~vekweelw~~~~eLE~~~~D~sR~~~Rgg~LlreEK~Rk~i~k~lP~l~~~L~~~i~~wE~e~g   82 (130)
T 3nrx_A            3 AALKNYYEVHKELFEGVQKWEETWRLFLEFERKASDPNRFTNRGGNLLKEEKQRAKLQKMLPKLEEELKARIELWEQEHS   82 (130)
T ss_dssp             CHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC
Confidence            58999999999999999999766666666999953                                             


Q ss_pred             -------hhHHhhH-HHHHHHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccC
Q 045523          385 -------VRLISML-EDYSCMRQEKELERQRQKDHRKLQVQLIAEQEAIYGS  428 (634)
Q Consensus       385 -------~rLl~~l-ee~~~~r~eKEeEK~r~R~~Kk~q~ql~~e~e~~~Gs  428 (634)
                             +++++++ ++|+.||++||+||+| |++||.   +++|+||+|||
T Consensus        83 ~~Flv~G~~~le~l~eqw~~~r~~KE~eK~~-R~~kk~---~~~e~e~~~gs  130 (130)
T 3nrx_A           83 KAFMVNGQKFMEYVAEQWEMHRLEKERAKQE-RQLKNK---KQTETEMLYGS  130 (130)
T ss_dssp             SCCEETTEEHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHHHHCC
T ss_pred             CeeeEcCccHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHhccCC
Confidence                   6799988 5599999999999999 999998   35999999998
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00