Citrus Sinensis ID: 045532

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170---
Protein Sequence
MSLLPSRHDACMGSMAIKFAEKTKNPFLPFPHPRLAKALFSFYLKAGGGIYRCVHTAKMSRRNGNVPKLDLKLNLSPPRGNPHMESPSQSATVSPTSPPSSCVSSENQEDMLQYSNSPEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHDKNNNSNNNTRETRRS
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHcccEEEEEccccccccccccccccccEEcccccccccccccccccccccccccccccccccHHHHHHccccccccccEEEEEcccccEEEEEEccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHccccccccccccccccccEEEccccccEEEEcccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccEEEEEEEcccccccccccccEHHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
msllpsrhdacmGSMAIKFAektknpflpfphprLAKALFSFYLKAGGGIYRCVHTAkmsrrngnvpkldlklnlspprgnphmespsqsatvsptsppsscvssenqedmlqysnspeatsmvLVGCPRCLMYVmlseddpkcpkckstvLLDFLhdknnnsnnntretrrs
Flexible Loop (DISEMBL)
msllpsrhdaCMGSMAIKFAEKTKNPFLPFPHPRLAKALFSFYLKAGGGIYRCVHTAKmsrrngnvpklDLKLNLSPPRGNPHMESPSQSATVSPTSPPSSCVSSENQEDMLQYSNSPEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLdflhdknnnsnnntretrrs
Low Complexity Region (SEG)
MSLLPSRHDACMGSMAIKFAEKTKNPFLPFPHPRLAKALFSFYLKAGGGIYRCVHTAKMSRRNGNVPKLDLKLNLSPPRGNPHMEspsqsatvsptsppsscvssENQEDMLQYSNSPEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHDKnnnsnnnTRETRRS
Disordered region (IsUnstruct)
**************MAIKFAEKTKNPFLPFPHPRLAKALFSFYLKAGGGIYRCVHTAK***************************************************************SMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLH****************
Disordered Region (DISOPRED)
********DACMGSMAIKFAEKTKNPFLPFPHPRLAKALFSFYLKAGG***************************************************************************VLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDF******************
Disordered Region (DISEMBL)
MSLLPSRHDACMGSMAIKFAEKTKNPFLPFPHPRLAKALFSFYLKAGGGIYRCVHTAKMSRRNGNVPKLDLKLNLSPPR********************************LQYSNSPEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHDKNNNS**********
Disordered Region (DISPRO)
*****SRHDACMGSMAIKFAEKTKNPFLPFPHPRLAKALFSFYLKAGGGIYRCVHTAK*******VPKLDLKLNLS*******************************************ATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHDK**************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSLLPSRHDACMGSMAIKFAEKTKNPFLPFPHPRLAKALFSFYLKAGGGIYRCVHTAKMSRRNGNVPKLDLKLNLSPPRGNPHMESPSQSATVSPTSPPSSCVSSENQEDMLQYSNSPEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHDKNNNSNNNTRETRRS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
255578609	195	conserved hypothetical protein [Ricinus	0.780	0.692	0.695	8e-46
147856870	281	hypothetical protein VITISV_012166 [Viti	0.572	0.352	0.872	1e-42
225440755	120	PREDICTED: uncharacterized protein LOC10	0.583	0.841	0.875	3e-42
224140053	115	predicted protein [Populus trichocarpa]	0.658	0.991	0.784	2e-41
224091919	104	predicted protein [Populus trichocarpa]	0.578	0.961	0.851	5e-41
356572600	109	PREDICTED: uncharacterized protein LOC10	0.589	0.935	0.836	9e-40
356505406	109	PREDICTED: uncharacterized protein LOC10	0.589	0.935	0.826	3e-39
449518366	140	PREDICTED: uncharacterized protein LOC10	0.647	0.8	0.691	6e-38
449437444	120	PREDICTED: uncharacterized protein LOC10	0.658	0.95	0.722	2e-37
449451175	121	PREDICTED: uncharacterized protein LOC10	0.589	0.842	0.736	6e-37

>gi|255578609|ref|XP_002530166.1| conserved hypothetical protein [Ricinus communis] gi|223530327|gb|EEF32221.1| conserved hypothetical protein [Ricinus communis]

 Score =  188 bits (477), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 103/148 (69%), Positives = 114/148 (77%), Gaps = 13/148 (8%)

Query: 29  PFPHPRLAKALFSFYLKAGGGIYRCVHTAK--MSRRNGNVPKLDLKLNLSPPRGNPHMES 86
           PFP P   +   +      G IY   +T K  MSRRNGN PKLDLKLNLSPPR +P +ES
Sbjct: 58  PFPLPLGWQKFLNL---QTGEIYYTKNTRKKTMSRRNGNGPKLDLKLNLSPPRADPRVES 114

Query: 87  PSQSATVSPTSPPSSCVSSE-NQEDMLQYSNSPEATSMVLVGCPRCLMYVMLSEDDPKCP 145
           P++SATVSPTSPPSSCVSSE NQ+D L+YSNSPEATSMVLVGCPRCLMYVMLSEDDPKCP
Sbjct: 115 PNRSATVSPTSPPSSCVSSELNQDDTLRYSNSPEATSMVLVGCPRCLMYVMLSEDDPKCP 174

Query: 146 KCKSTVLLDFLHDKNNNSNNNTRETRRS 173
           KCKSTVLLDFLH+       NT +TR S
Sbjct: 175 KCKSTVLLDFLHE-------NTVQTRNS 195

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856870|emb|CAN79170.1| hypothetical protein VITISV_012166 [Vitis vinifera]

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 89/102 (87%), Positives = 95/102 (93%), Gaps = 3/102 (2%)

Query: 58  KMSRRNGNVPKLDLKLNLSPPRGNPHMESPSQSATVSPTSPPSSCVSSE-NQEDMLQYSN 116
           +MSRRNG  PKLDLKLNLSPPR N H ESPS+SAT+SPTSPPSSCVSSE NQ++ L+YSN
Sbjct: 161 RMSRRNG--PKLDLKLNLSPPRANRHAESPSRSATLSPTSPPSSCVSSELNQDETLRYSN 218

Query: 117 SPEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHD 158
           SPEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHD
Sbjct: 219 SPEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHD 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440755|ref|XP_002281204.1| PREDICTED: uncharacterized protein LOC100266492 [Vitis vinifera]

 Score =  176 bits (447), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 91/104 (87%), Positives = 96/104 (92%), Gaps = 3/104 (2%)

Query: 59  MSRRNGNVPKLDLKLNLSPPRGNPHMESPSQSATVSPTSPPSSCVSSE-NQEDMLQYSNS 117
           MSRRNG  PKLDLKLNLSPPR N H ESPS+SAT+SPTSPPSSCVSSE NQ++ L+YSNS
Sbjct: 1   MSRRNG--PKLDLKLNLSPPRANRHAESPSRSATLSPTSPPSSCVSSELNQDETLRYSNS 58

Query: 118 PEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHDKNN 161
           PEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHD NN
Sbjct: 59  PEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHDNNN 102

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140053|ref|XP_002323401.1| predicted protein [Populus trichocarpa] gi|222868031|gb|EEF05162.1| predicted protein [Populus trichocarpa]

 Score =  173 bits (438), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 91/116 (78%), Positives = 103/116 (88%), Gaps = 2/116 (1%)

Query: 59  MSRRNGNVPKLDLKLNLSPPRGNPHMESPSQSATVSPTSPPSSCVSSE-NQEDMLQYSNS 117
           MSRRNG++PKLDLKLNLSPPR NP +ESP +SATVSPTSPPSSCVSSE +Q+D L+YS+S
Sbjct: 1   MSRRNGSLPKLDLKLNLSPPRVNPRVESPGRSATVSPTSPPSSCVSSEMSQDDTLRYSSS 60

Query: 118 PEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHDKNNNSNNNTRETRRS 173
           PEATSMVLVGCPRCLMYVMLSE+DPKCPKCKST LLDFLHD N  +   T +TR+S
Sbjct: 61  PEATSMVLVGCPRCLMYVMLSENDPKCPKCKSTWLLDFLHD-NTTTTTTTMKTRKS 115

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091919|ref|XP_002309400.1| predicted protein [Populus trichocarpa] gi|222855376|gb|EEE92923.1| predicted protein [Populus trichocarpa]

 Score =  172 bits (435), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 86/101 (85%), Positives = 95/101 (94%), Gaps = 1/101 (0%)

Query: 59  MSRRNGNVPKLDLKLNLSPPRGNPHMESPSQSATVSPTSPPSSCVSSE-NQEDMLQYSNS 117
           MSRRNG++PKLDLKLNLSPPR NP +ESP +SATVSPTSPPSSCVSSE + +D L+YS+S
Sbjct: 1   MSRRNGSLPKLDLKLNLSPPRVNPRVESPGRSATVSPTSPPSSCVSSERSHDDALRYSSS 60

Query: 118 PEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHD 158
           PEATSMVLVGCPRCLMYVMLSE+DPKCPKCKSTVLLDFLHD
Sbjct: 61  PEATSMVLVGCPRCLMYVMLSENDPKCPKCKSTVLLDFLHD 101

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572600|ref|XP_003554456.1| PREDICTED: uncharacterized protein LOC100805043 [Glycine max]

 Score =  168 bits (425), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 87/104 (83%), Positives = 92/104 (88%), Gaps = 2/104 (1%)

Query: 59  MSRRNGNVPKLDLKLNLSPPRGNPHMESPSQSATVSPTSPPSSCVSSE-NQEDMLQYSNS 117
           MSRRN + PKLDLKLNLSPPR +  +ESP++SAT SPTSPPSSCVSSE NQED   YSNS
Sbjct: 1   MSRRNESGPKLDLKLNLSPPRADRRLESPTRSATASPTSPPSSCVSSELNQEDK-SYSNS 59

Query: 118 PEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHDKNN 161
           PEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHD  N
Sbjct: 60  PEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHDTKN 103

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505406|ref|XP_003521482.1| PREDICTED: uncharacterized protein LOC100788969 [Glycine max]

 Score =  166 bits (421), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 86/104 (82%), Positives = 92/104 (88%), Gaps = 2/104 (1%)

Query: 59  MSRRNGNVPKLDLKLNLSPPRGNPHMESPSQSATVSPTSPPSSCVSSE-NQEDMLQYSNS 117
           MSRRN + PKLDLKLNLSPPR +  ++SP++SAT SPTSPPSSCVSSE NQED   YSNS
Sbjct: 1   MSRRNESGPKLDLKLNLSPPRADRRLDSPTRSATASPTSPPSSCVSSELNQEDK-SYSNS 59

Query: 118 PEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHDKNN 161
           PEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHD  N
Sbjct: 60  PEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHDTKN 103

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518366|ref|XP_004166213.1| PREDICTED: uncharacterized protein LOC101226911 isoform 1 [Cucumis sativus]

 Score =  162 bits (409), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 85/123 (69%), Positives = 98/123 (79%), Gaps = 11/123 (8%)

Query: 54  VHTAKMSRRNGN-----VPKLDLKLNLSPPRGNPHMESPSQSATVSPTSPPSSCVSSENQ 108
           + T KM+RRN        PKL+LKLNLSPPR N  +ESPS+SATVSPTSPPSSCVSSE +
Sbjct: 23  IKTQKMNRRNSGGGGAATPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEE 82

Query: 109 EDMLQYSNSPEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHDKNNNSNNNTR 168
              ++YSNSPE TSM+LVGCPRCLMYVMLSE+DPKCPKCKSTVLLD LHD   N+   TR
Sbjct: 83  ---MRYSNSPETTSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHD---NAAVKTR 136

Query: 169 ETR 171
           +T+
Sbjct: 137 KTK 139

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437444|ref|XP_004136502.1| PREDICTED: uncharacterized protein LOC101204832 [Cucumis sativus] gi|449532679|ref|XP_004173308.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101226713 [Cucumis sativus]

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 86/119 (72%), Positives = 102/119 (85%), Gaps = 5/119 (4%)

Query: 59  MSRRN-GNVPKLDLKLNLSPPRGNPHMESPSQSATVSPTSPPSSCVSSE-NQEDM---LQ 113
           MSRR+ G+VPKL+LKLNLSPPR +P + SPS+SATVSPTSPPSSCVSSE NQ+D    L+
Sbjct: 1   MSRRSSGSVPKLELKLNLSPPRPHPLVSSPSRSATVSPTSPPSSCVSSELNQDDGGAGLR 60

Query: 114 YSNSPEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHDKNNNSNNNTRETRR 172
           YS+SPEATSMVLVGCPRCLMYVMLSE++PKCPKCKS+VLLDFLHD   ++  +T   R+
Sbjct: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARK 119

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451175|ref|XP_004143337.1| PREDICTED: uncharacterized protein LOC101217127 isoform 1 [Cucumis sativus]

 Score =  158 bits (400), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 81/110 (73%), Positives = 91/110 (82%), Gaps = 8/110 (7%)

Query: 54  VHTAKMSRRNGN-----VPKLDLKLNLSPPRGNPHMESPSQSATVSPTSPPSSCVSSENQ 108
           + T KM+RRN        PKL+LKLNLSPPR N  +ESPS+SATVSPTSPPSSCVSSE +
Sbjct: 6   IKTQKMNRRNSGGGGAATPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEE 65

Query: 109 EDMLQYSNSPEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHD 158
              ++YSNSPE TSM+LVGCPRCLMYVMLSE+DPKCPKCKSTVLLD LHD
Sbjct: 66  ---MRYSNSPETTSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHD 112

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
TAIR|locus:2164235	122	AT5G06270 "AT5G06270" [Arabido	0.647	0.918	0.512	1.6e-24
TAIR|locus:2098328	117	AT3G11600 "AT3G11600" [Arabido	0.624	0.923	0.508	1.6e-22
TAIR|locus:2176327	93	AT5G22270 "AT5G22270" [Arabido	0.219	0.408	0.666	1.6e-13
TAIR|locus:4515103251	99	AT3G52561 "AT3G52561" [Arabido	0.277	0.484	0.416	1.3e-06
TAIR|locus:2032900	259	AT1G16500 "AT1G16500" [Arabido	0.277	0.185	0.431	1.1e-05

TAIR|locus:2164235 AT5G06270 "AT5G06270" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 64/125 (51%), Positives = 75/125 (60%)

Query:    59 MSRRNGNVPKLDLKLNLSPPRGNPH--MEXXXXXXXXXXXXXXXXXXXXE-NQED-MLQY 114
             MSRR+   PKL+LKLNLSPP  +    +                     E NQ++  ++Y
Sbjct:     1 MSRRS---PKLELKLNLSPPTSSQRRMVRSPSRSATTSPTSPPSSCVSSEMNQDEPSVRY 57

Query:   115 SNSPEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHDKXX------XXXXXTR 168
             S SPE TSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLH+               R
Sbjct:    58 STSPETTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHENATNANANAAAASSGR 117

Query:   169 ETRRS 173
             +TRR+
Sbjct:   118 KTRRN 122

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2098328 AT3G11600 "AT3G11600" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 59/116 (50%), Positives = 65/116 (56%)

Query:    59 MSRRNGNVPKLDLKLNLSPPRGNP-HMEXXXXXXXXXXXXXXXXXXXXENQEDMLQYSNS 117
             MSRRN N PKL+L+LNLSPP      M                      NQE+      +
Sbjct:     1 MSRRNKNGPKLELRLNLSPPPSQASQMSLVRSPNRSNTTSPSSCVSSETNQEE------N 54

Query:   118 PEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHDKXXXXXXXTR-ETRR 172
                TSMVLVGCPRCLMYVMLS+DDPKCPKCKSTVLLDFL +        T   TRR
Sbjct:    55 ETITSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDFLQENAFAATTATAANTRR 110

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2176327 AT5G22270 "AT5G22270" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
 Identities = 26/39 (66%), Positives = 33/39 (84%)

Query:   119 EATSMVLVGCPRCLMYVMLS-EDDPKCPKCKSTVLLDFL 156
             EA SMV+VGCP C+MY++ S E+DP+CP+C S VLLDFL
Sbjct:    45 EAKSMVVVGCPNCIMYIITSLENDPRCPRCNSHVLLDFL 83

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:4515103251 AT3G52561 "AT3G52561" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query:   108 QEDMLQYSNSPEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDF 155
             +E    + +  EA  MV++GC  C+MYVM+ ++  +CPKCK T L+ F
Sbjct:    52 EEVASSWVDEEEAPEMVVMGCRSCMMYVMVLQERQRCPKCKCTDLIFF 99

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2032900 AT1G16500 "AT1G16500" [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 22/51 (43%), Positives = 31/51 (60%)

Query:   106 ENQEDMLQYSNSPEAT---SMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLL 153
             ++ ED   Y  +  AT   S V  GCP CL YV +++++PKCP+C S V L
Sbjct:   195 QSPEDDGVYDGTASATVAASQVAAGCPGCLSYVFVAKNNPKCPRCHSFVPL 245


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.135   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      173       146   0.00079  103 3  11 22  0.44    31
                                                     30  0.49    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  555 (59 KB)
  Total size of DFA:  136 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.45u 0.16s 12.61t   Elapsed:  00:00:01
  Total cpu time:  12.45u 0.16s 12.61t   Elapsed:  00:00:01
  Start:  Thu May  9 16:46:30 2013   End:  Thu May  9 16:46:31 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00021534001 SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (261 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	173
PF00397	31	WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp	96.83
smart00456	32	WW Domain with 2 conserved Trp (W) residues. Also	95.95
cd00201	31	WW Two conserved tryptophans domain; also known as	95.06
PRK08351	61	DNA-directed RNA polymerase subunit E''; Validated	87.86
PRK06393	64	rpoE DNA-directed RNA polymerase subunit E''; Vali	81.08

>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet

Probab=96.83  E-value=0.0008  Score=40.71  Aligned_cols=29  Identities=14%  Similarity=0.136  Sum_probs=23.4

Q ss_pred             CCcchhccceeeeeccccE-EEeeccCcccCCC
Q 045532           32 HPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRN   63 (173)
Q Consensus        32 lP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~   63 (173)
                      ||.+|+   .+.|-.+|++ |+|..|.+.+|..
T Consensus         1 LP~gW~---~~~~~~~g~~YY~N~~t~~s~W~~   30 (31)
T PF00397_consen    1 LPPGWE---EYFDPDSGRPYYYNHETGESQWER   30 (31)
T ss_dssp             SSTTEE---EEEETTTSEEEEEETTTTEEESSS
T ss_pred             CCcCCE---EEEcCCCCCEEEEeCCCCCEEeCC
Confidence            789996   8888668999 7799998766643

This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....

>smart00456 WW Domain with 2 conserved Trp (W) residues

Probab=95.95  E-value=0.007  Score=35.84  Aligned_cols=29  Identities=14%  Similarity=-0.060  Sum_probs=23.5

Q ss_pred             CCcchhccceeeeeccccE-EEeeccCcccCCCC
Q 045532           32 HPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNG   64 (173)
Q Consensus        32 lP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~   64 (173)
                      ||.+|+   ++.|-. |++ |+|..|...+|..|
T Consensus         1 lp~gW~---~~~~~~-g~~yy~n~~t~~s~W~~P   30 (32)
T smart00456        1 LPPGWE---ERKDPD-GRPYYYNHETKETQWEKP   30 (32)
T ss_pred             CCCCCE---EEECCC-CCEEEEECCCCCEEcCCC
Confidence            689997   888988 999 77999877666554

Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.

>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs

Probab=95.06  E-value=0.022  Score=33.06  Aligned_cols=28  Identities=14%  Similarity=0.127  Sum_probs=22.3

Q ss_pred             CcchhccceeeeeccccE-EEeeccCcccCCCC
Q 045532           33 PRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNG   64 (173)
Q Consensus        33 P~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~   64 (173)
                      |.+|+   .+.|.. |++ |+|..|.+.+|..|
T Consensus         1 p~~W~---~~~~~~-g~~yy~n~~t~~s~W~~P   29 (31)
T cd00201           1 PPGWE---ERWDPD-GRVYYYNHNTKETQWEDP   29 (31)
T ss_pred             CCCCE---EEECCC-CCEEEEECCCCCEeCCCC
Confidence            67897   888988 999 77998877666544

>PRK08351 DNA-directed RNA polymerase subunit E''; Validated

Probab=87.86  E-value=0.24  Score=35.13  Aligned_cols=25  Identities=28%  Similarity=0.691  Sum_probs=19.6

Q ss_pred             eEEeeCccceEEEEeeCCCCCCCCCCCcc
Q 045532          123 MVLVGCPRCLMYVMLSEDDPKCPKCKSTV  151 (173)
Q Consensus       123 mV~~gC~~ClmYVMl~k~~P~CP~Cks~v  151 (173)
                      |..-+|.+|+..+    ....||+|.+.-
T Consensus         1 M~~kAC~~C~~i~----~~~~CP~Cgs~~   25 (61)
T PRK08351          1 MTEKACRHCHYIT----TEDRCPVCGSRD   25 (61)
T ss_pred             CchhhhhhCCccc----CCCcCCCCcCCc
Confidence            4455899999877    455899999875

>PRK06393 rpoE DNA-directed RNA polymerase subunit E''; Validated

Probab=81.08  E-value=0.59  Score=33.53  Aligned_cols=24  Identities=17%  Similarity=0.466  Sum_probs=19.7

Q ss_pred             EEeeCccceEEEEeeCCCCCCCCCCCcc
Q 045532          124 VLVGCPRCLMYVMLSEDDPKCPKCKSTV  151 (173)
Q Consensus       124 V~~gC~~ClmYVMl~k~~P~CP~Cks~v  151 (173)
                      .+.+|.+|+..+    .+..||.|++.-
T Consensus         4 ~~~AC~~C~~i~----~~~~Cp~Cgs~~   27 (64)
T PRK06393          4 QYRACKKCKRLT----PEKTCPVHGDEK   27 (64)
T ss_pred             hhhhHhhCCccc----CCCcCCCCCCCc
Confidence            456899999877    466999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	173
1wr7_A	41	NEDD4-2; all-beta, ligase; NMR {Mus musculus}	97.59
2law_A	38	Yorkie homolog; YAP, SMAD1, CDK, signal transducti	97.54
2djy_A	42	SMAD ubiquitination regulatory factor 2; beta shee	97.45
1i5h_W	50	Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains,	97.44
1wr3_A	36	Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M	97.42
1wr4_A	36	Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M	97.41
1e0m_A	37	Wwprototype; SH3 prototype, protein design, de nov	97.39
2dmv_A	43	Itchy homolog E3 ubiquitin protein ligase; WW doma	97.34
2ysg_A	40	Syntaxin-binding protein 4; synip, STXBP4, WW doma	97.32
2kyk_A	39	E3 ubiquitin-protein ligase itchy homolog; LMP2A,	97.32
2zaj_A	49	Membrane-associated guanylate kinase, WW and PDZ d	97.3
2ysf_A	40	E3 ubiquitin-protein ligase itchy homolog; AIP4, N	97.29
2l4j_A	46	YES-associated protein 2 (YAP2); WW domain, medaka	97.26
2kpz_A	49	E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV	97.21
2jmf_A	53	E3 ubiquitin-protein ligase suppressor of deltex;	97.19
2ysh_A	40	GAS-7, growth-arrest-specific protein 7; WW domain	97.19
2ez5_W	46	Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW doma	97.18
1ymz_A	43	CC45; artificial protein, computational design, un	97.11
2ysb_A	49	Salvador homolog 1 protein; WW domain, structural	96.95
2yse_A	60	Membrane-associated guanylate kinase, WW and PDZ d	96.93
2jv4_A	54	Peptidyl-prolyl CIS/trans isomerase; ppiase domain	96.84
2dwv_A	49	Salvador homolog 1 protein; WW domain, dimer, stru	96.77
1wmv_A	54	WWOX, WW domain containing oxidoreductase; all-bet	96.67
2ysd_A	57	Membrane-associated guanylate kinase, WW and PDZ d	96.61
1jmq_A	46	YAP65, 65 kDa YES-associated protein; polyproline	96.35
1tk7_A	88	CG4244-PB; WW domain, notch, signaling protein; NM	96.03
2jx8_A	52	Hpcif1, phosphorylated CTD-interacting factor 1; p	96.03
2ysc_A	39	Amyloid beta A4 precursor protein-binding family B	95.96
2kxq_A	90	E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG	95.77
2ho2_A	38	Fe65 protein, amyloid beta A4 protein-binding fami	95.66
1tk7_A	88	CG4244-PB; WW domain, notch, signaling protein; NM	95.13
2kxq_A	90	E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG	95.05
3tc5_A	166	Peptidyl-prolyl CIS-trans isomerase NIMA-interact;	94.67
2e45_A	55	Fe65 protein, amyloid beta A4 precursor protein-bi	94.51
3l4h_A	109	E3 ubiquitin-protein ligase HECW1; E3 ligase, WW d	94.16
2l5f_A	92	PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA	92.56
2ysi_A	40	Transcription elongation regulator 1; Ca150, FBP28	91.18
1o6w_A	75	PRP40, PRE-mRNA processing protein PRP40; WW domai	90.77
3olm_A	429	E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S	86.96
1ywi_A	41	Formin-binding protein 3; WW domain, class II, pro	85.81
1ryq_A	69	DNA-directed RNA polymerase, subunit E''; structur	84.88
1e0n_A	27	Hypothetical protein; YJQ8WW domain, WW domain, sa	84.79
1eg3_A	261	Dystrophin; EF-hand like domain, WW domain, struct	84.6
2jxw_A	75	WW domain-binding protein 4; WW domain containing	83.33
1e0l_A	37	Formin binding protein; SH3 domain, WW domain, FBP	82.18

>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}

Probab=97.59  E-value=3.2e-05  Score=48.61  Aligned_cols=36  Identities=11%  Similarity=-0.037  Sum_probs=28.5

Q ss_pred             CCCCCCCCCcchhccceeeeeccccE-EEeeccCcccCCCC
Q 045532           25 NPFLPFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNG   64 (173)
Q Consensus        25 ~~~l~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~   64 (173)
                      ++..+.+||.+||   +++| .+|++ |+|..|.+..|..+
T Consensus         2 ~p~~~~~LP~gWe---~~~~-~~G~~Yy~n~~t~~t~We~P   38 (41)
T 1wr7_A            2 SPGIQSFLPPGWE---MRIA-PNGRPFFIDHNTKTTTWEDP   38 (41)
T ss_dssp             TTCCCCSSCTTEE---EEEC-TTSCEEEEETTTTEEESSCG
T ss_pred             CCCccCCCCCCcE---EEEc-CCCCEEEEECCCCCeecCCC
Confidence            3556789999998   8889 68999 77988877776554

>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}

Probab=97.54  E-value=4.6e-05  Score=47.23  Aligned_cols=32  Identities=19%  Similarity=0.079  Sum_probs=25.3

Q ss_pred             CCCCCcchhccceeeeeccccE-EEeeccCcccCCCC
Q 045532           29 PFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNG   64 (173)
Q Consensus        29 ~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~   64 (173)
                      +.+||.+||   +++| .+|++ |+|..|.+.+|..+
T Consensus         4 ~~~LP~gWe---~~~~-~~G~~Yy~nh~t~~ttW~~P   36 (38)
T 2law_A            4 EGPLPDGWE---QAMT-QDGEIYYINHKNKTTSWLDP   36 (38)
T ss_dssp             -CCCSSSCC---EEEE-TTTEEEEEETTTTEEESSCT
T ss_pred             cCCCCCCcE---EEEC-CCCCEEEEECCCCCEeCCCC
Confidence            358999998   8889 89999 77888876766554

>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A

Probab=97.45  E-value=0.0001  Score=46.86  Aligned_cols=36  Identities=14%  Similarity=0.044  Sum_probs=28.3

Q ss_pred             CCCCCCCCcchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532           26 PFLPFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN   65 (173)
Q Consensus        26 ~~l~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~   65 (173)
                      |....+||.+||   ++.| .+|++ |+|..|.+..|..+.
T Consensus         2 p~~~~~LP~GWe---~~~~-~~G~~Yy~nh~t~~ttW~~Pr   38 (42)
T 2djy_A            2 PLGSGPLPPGWE---IRNT-ATGRVYFVDHNNRTTQFTDPR   38 (42)
T ss_dssp             CCCCSCCCSSEE---EEEC-SSSCEEEEETTTTEEESSCTT
T ss_pred             CCCcCCCCcCcE---EEEC-CCCCEEEEECCCCCEeCCCCC
Confidence            445668999998   7888 89999 778888777776654

>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*

Probab=97.44  E-value=9e-05  Score=48.70  Aligned_cols=36  Identities=11%  Similarity=-0.027  Sum_probs=28.7

Q ss_pred             CCCCCCCcchhccceeeeeccccE-EEeeccCcccCCCCCC
Q 045532           27 FLPFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGNV   66 (173)
Q Consensus        27 ~l~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~~   66 (173)
                      ....+||.+||   +++| .+|++ |+|..|.+..|..+..
T Consensus         7 ~~~~~LP~gWe---~~~~-~~Gr~Yy~nh~t~~T~We~Pr~   43 (50)
T 1i5h_W            7 NDLGPLPPGWE---ERTH-TDGRVFFINHNIKKTQWEDPRM   43 (50)
T ss_dssp             SCCSSCSTTEE---EEEC-TTSCEEEEETTTTEEESSCTTT
T ss_pred             ccCCCCCcCcE---EEEc-CCCCEEEEECCCCCEEeeCCCC
Confidence            45568999998   8889 89999 7788887777776643

>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}

Probab=97.42  E-value=7.3e-05  Score=45.39  Aligned_cols=31  Identities=13%  Similarity=-0.057  Sum_probs=25.2

Q ss_pred             CCCCcchhccceeeeeccccE-EEeeccCcccCCCC
Q 045532           30 FPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNG   64 (173)
Q Consensus        30 ~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~   64 (173)
                      .+||.+||   ++.| .+|++ |+|..|.+..|..+
T Consensus         3 ~~LP~GWe---~~~d-~~G~~Yy~n~~t~~t~We~P   34 (36)
T 1wr3_A            3 PPLPPGWE---EKVD-NLGRTYYVNHNNRSTQWHRP   34 (36)
T ss_dssp             SCSCTTEE---EEEC-SSSCEEEEETTTCCEESSCS
T ss_pred             CCCCCCCE---EEEC-CCCCEEEEECCCCCEeeeCc
Confidence            47999998   8889 79999 77988877766654

>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*

Probab=97.41  E-value=8.3e-05  Score=44.77  Aligned_cols=32  Identities=13%  Similarity=-0.081  Sum_probs=25.3

Q ss_pred             CCCCCcchhccceeeeeccccE-EEeeccCcccCCCC
Q 045532           29 PFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNG   64 (173)
Q Consensus        29 ~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~   64 (173)
                      +.+||.+||   ++.| .+|++ |+|..|.+..|..+
T Consensus         2 ~~~LP~gWe---~~~d-~~g~~Yy~n~~t~~t~W~~P   34 (36)
T 1wr4_A            2 SPGLPSGWE---ERKD-AKGRTYYVNHNNRTTTWTRP   34 (36)
T ss_dssp             CTTCCTTEE---EEEC-SSSCEEEEETTTTEEESSCC
T ss_pred             CCCCCCCCE---EEEC-CCCCEEEEECCCCCEeCcCC
Confidence            358999998   8889 59999 77888876666654

>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1

Probab=97.39  E-value=9.9e-05  Score=44.78  Aligned_cols=32  Identities=13%  Similarity=0.091  Sum_probs=25.9

Q ss_pred             CCCCcchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532           30 FPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN   65 (173)
Q Consensus        30 ~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~   65 (173)
                      .+||.+||   .+.| .+|++ |+|..|.+..|..+.
T Consensus         2 ~~LP~gW~---~~~~-~~G~~Yy~n~~t~~t~W~~P~   34 (37)
T 1e0m_A            2 MGLPPGWD---EYKT-HNGKTYYYNHNTKTSTWTDPR   34 (37)
T ss_dssp             CCSCTTEE---EEEC-SSCCEEEEETTTTEEESSCTT
T ss_pred             CCCCCCcE---EEEC-CCCCEEEEECCCCCeeeeCcC
Confidence            47999998   7888 68999 779988777776654

>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.34  E-value=0.00013  Score=46.25  Aligned_cols=33  Identities=9%  Similarity=-0.074  Sum_probs=26.9

Q ss_pred             CCCCCcchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532           29 PFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN   65 (173)
Q Consensus        29 ~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~   65 (173)
                      +.+||.+||   +++| ..|++ |+|..|.+..|..+.
T Consensus         5 ~~~LP~GWe---~~~d-~~Gr~YY~n~~t~~T~We~P~   38 (43)
T 2dmv_A            5 SSGLPPGWE---QRVD-QHGRVYYVDHVEKRTTWDRPS   38 (43)
T ss_dssp             CCSCCTTEE---EEEC-TTSCEEEEETTTCCEESSCSS
T ss_pred             CCCCCCCce---EEEC-CCCCEEEEECCCCCEecCCcC
Confidence            468999998   8889 58999 779888777777664

>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1

Probab=97.32  E-value=0.00013  Score=45.58  Aligned_cols=32  Identities=19%  Similarity=-0.034  Sum_probs=26.2

Q ss_pred             CCCCCcchhccceeeeeccccE-EEeeccCcccCCCC
Q 045532           29 PFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNG   64 (173)
Q Consensus        29 ~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~   64 (173)
                      +.+||.+||   ++.| ..|++ |+|..|.+..|..|
T Consensus         5 ~~~LP~gWe---~~~~-~~Gr~Yy~nh~t~~ttW~~P   37 (40)
T 2ysg_A            5 SSGLPYGWE---EAYT-ADGIKYFINHVTQTTSWIHP   37 (40)
T ss_dssp             SSCCCTTEE---EEEC-SSSCEEEEESSSCCEECCCC
T ss_pred             cCCCCCCcE---EEEc-CCCCEEEEECCCCcCcCCCC
Confidence            458999998   8889 89999 77888877777655

>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}

Probab=97.32  E-value=0.00012  Score=45.38  Aligned_cols=31  Identities=19%  Similarity=-0.001  Sum_probs=25.2

Q ss_pred             CCCCcchhccceeeeeccccE-EEeeccCcccCCCC
Q 045532           30 FPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNG   64 (173)
Q Consensus        30 ~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~   64 (173)
                      -|||.+||   .+.| .+|++ |+|..|.+..|..+
T Consensus         5 ~~LP~gWe---~~~d-~~G~~YY~n~~t~~t~We~P   36 (39)
T 2kyk_A            5 GPLPPGWE---RRVD-NMGRIYYVDHFTRTTTWQRP   36 (39)
T ss_dssp             CCCCSSCE---EEEC-TTSCEEEECSSSCCEECCCC
T ss_pred             CCCCCCcE---EEEc-CCCCEEEEECCCCCEeccCC
Confidence            47999998   8889 69999 77888877777655

>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}

Probab=97.30  E-value=0.00021  Score=46.97  Aligned_cols=36  Identities=17%  Similarity=-0.088  Sum_probs=28.3

Q ss_pred             CCCCCCCcchhccceeeeeccccE-EEeeccCcccCCCCCC
Q 045532           27 FLPFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGNV   66 (173)
Q Consensus        27 ~l~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~~   66 (173)
                      +.+.+||.+||   ++.| ..|++ |+|..|.+..|..|..
T Consensus         9 ~~~~~LP~GWe---~~~d-~~Gr~YYvnh~t~~T~We~P~~   45 (49)
T 2zaj_A            9 DSELELPAGWE---KIED-PVYGIYYVDHINRKTQYENPSG   45 (49)
T ss_dssp             CCSSCCCTTEE---EEEE-TTTEEEEEETTTTEEESSCCCS
T ss_pred             CCCCCCCcCce---EEEc-CCCCEEEEeCCCCCEecCCCCC
Confidence            34578999998   8889 78999 7788887777776643

>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1

Probab=97.29  E-value=0.00014  Score=45.51  Aligned_cols=33  Identities=6%  Similarity=-0.143  Sum_probs=26.4

Q ss_pred             CCCCCCcchhccceeeeeccccE-EEeeccCcccCCCC
Q 045532           28 LPFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNG   64 (173)
Q Consensus        28 l~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~   64 (173)
                      -+.+||.+||   ++.| .+|++ |+|..|.+..|..+
T Consensus         4 ~~~~LP~gWe---~~~~-~~G~~Yy~nh~t~~ttw~~P   37 (40)
T 2ysf_A            4 GSSGLPEGWE---MRFT-VDGIPYFVDHNRRTTTYIDP   37 (40)
T ss_dssp             CCCCCCSSEE---EEEC-TTCCEEEEETTTCCEESSCT
T ss_pred             CcCCCCcCcE---EEEc-CCCCEEEEECCCCcEecCCC
Confidence            3568999998   8889 89999 77888877777654

>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}

Probab=97.26  E-value=0.00021  Score=46.22  Aligned_cols=33  Identities=18%  Similarity=0.072  Sum_probs=26.7

Q ss_pred             CCCCCCcchhccceeeeeccccE-EEeeccCcccCCCC
Q 045532           28 LPFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNG   64 (173)
Q Consensus        28 l~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~   64 (173)
                      .+.+||.+||   +++| .+|++ |+|..|.+..|..+
T Consensus         8 ~~~~LP~gWe---~~~~-~~G~~Yyinh~t~~TtWe~P   41 (46)
T 2l4j_A            8 ASGPLPEGWE---QAIT-PEGEIYYINHKNKTTSWLDP   41 (46)
T ss_dssp             TTSCCCTTCE---EEEC-TTSCEEEEETTTTEEECSCC
T ss_pred             cCCCCCcCce---eEEC-CCCCEEEEECCCCCEeCCCC
Confidence            4568999998   8899 89999 77888876777655

>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*

Probab=97.21  E-value=0.00017  Score=47.00  Aligned_cols=34  Identities=9%  Similarity=-0.123  Sum_probs=25.8

Q ss_pred             CCCCCCcchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532           28 LPFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN   65 (173)
Q Consensus        28 l~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~   65 (173)
                      .+.+||.+||   .++| .+|++ |+|..|.+..|..+.
T Consensus         9 ~~~~LP~gWe---~~~~-~~G~~Yy~nh~T~~ttWe~Pr   43 (49)
T 2kpz_A            9 EQGFLPKGWE---VRHA-PNGRPFFIDHNTKTTTWEDPR   43 (49)
T ss_dssp             ---CCCTTEE---EEEC-TTSCEEEEETTTTEEESSCTT
T ss_pred             cCCCCCCCcE---EEEC-CCCCEEEEECCCCCEecCCCC
Confidence            3568999998   8889 79999 778888777776653

>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A

Probab=97.19  E-value=0.00031  Score=46.84  Aligned_cols=36  Identities=17%  Similarity=0.059  Sum_probs=28.3

Q ss_pred             CCCCCCCCcchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532           26 PFLPFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN   65 (173)
Q Consensus        26 ~~l~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~   65 (173)
                      ...+.+||.|||   +++| .+|++ |+|..|.+..|..+.
T Consensus        13 ~~~~~~LP~GWe---~~~~-~~Gr~Yyinh~tk~TtW~dPr   49 (53)
T 2jmf_A           13 LINEGPLPPGWE---IRYT-AAGERFFVDHNTRRTTFEDPR   49 (53)
T ss_dssp             TTSCSCCCTTEE---EEEC-TTSCEEEEETTTCCEESSCCC
T ss_pred             cCcCCCCCcCcE---EEEc-CCCCEEEEeCCCCcEecCCCC
Confidence            345678999999   8889 89999 668888777776653

>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1

Probab=97.19  E-value=0.00023  Score=44.09  Aligned_cols=33  Identities=15%  Similarity=0.087  Sum_probs=26.5

Q ss_pred             CCCCCcchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532           29 PFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN   65 (173)
Q Consensus        29 ~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~   65 (173)
                      +.+||.+||   ++.| ..|++ |+|..|.+..|..+.
T Consensus         5 ~~~LP~gW~---~~~d-~~Gr~YY~n~~T~~t~We~P~   38 (40)
T 2ysh_A            5 SSGLPPGWQ---SYLS-PQGRRYYVNTTTNETTWERPS   38 (40)
T ss_dssp             CSSCCTTCE---EEEC-TTSCEEEECSSSCCEESSSCC
T ss_pred             CCCCCCCce---EEEC-CCCCEEEEECCCCCEeCCCCC
Confidence            468999998   8889 68999 779988877776553

>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}

Probab=97.18  E-value=0.00024  Score=45.84  Aligned_cols=34  Identities=9%  Similarity=-0.027  Sum_probs=27.0

Q ss_pred             CCCCCCcchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532           28 LPFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN   65 (173)
Q Consensus        28 l~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~   65 (173)
                      .+.+||.+||   +++| .+|++ |+|..|.+..|..+.
T Consensus         7 ~~~~LP~gWe---~~~~-~~Gr~Yyinh~t~~TtW~~Pr   41 (46)
T 2ez5_W            7 EEEPLPPRWS---MQVA-PNGRTFFIDHASRRTTWIDPR   41 (46)
T ss_dssp             CSCCCCTTEE---EEEC-TTSSEEEEETTTTEEESBCTT
T ss_pred             CCCCCCcCcE---EEEc-CCCCEEEEECCCCCEeccCCC
Confidence            4568999998   8888 68999 778888777776653

>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1

Probab=97.11  E-value=0.00028  Score=44.42  Aligned_cols=33  Identities=18%  Similarity=0.136  Sum_probs=25.9

Q ss_pred             CCCCCcchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532           29 PFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN   65 (173)
Q Consensus        29 ~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~   65 (173)
                      +.+||.+||   ++.| .+|++ |+|..|....|..+.
T Consensus         6 ~~~LP~gW~---~~~~-~~Gr~YY~n~~T~~t~We~P~   39 (43)
T 1ymz_A            6 SMPLPPGWE---RRTD-VEGKVYYFNVRTLTTTWERPT   39 (43)
T ss_dssp             -CCCCSSEE---EEEC-TTSCEEEEETTTTEEESSCCC
T ss_pred             CCCCCCCCE---EEEC-CCCCEEEEECCCCCCcccCCc
Confidence            458999998   8888 59999 779998777776653

>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1

Probab=96.95  E-value=0.00047  Score=45.18  Aligned_cols=34  Identities=15%  Similarity=-0.006  Sum_probs=26.5

Q ss_pred             CCCCCCcchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532           28 LPFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN   65 (173)
Q Consensus        28 l~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~   65 (173)
                      .+.+||.+||   .++|. .|++ |+|..|.+..|..+.
T Consensus         8 ~~~~LP~gWe---~~~~~-~Gr~Yy~nh~t~~T~W~~P~   42 (49)
T 2ysb_A            8 EDLPLPPGWS---VDWTM-RGRKYYIDHNTNTTHWSHPL   42 (49)
T ss_dssp             CCCCCCTTEE---EEECS-SSCEEEEETTTTEEESSCTT
T ss_pred             CCCCCCCCce---EEECC-CCCEEEEEcCCCCEEecCCC
Confidence            5678999998   88884 8999 668887767776553

>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.93  E-value=0.00042  Score=47.54  Aligned_cols=34  Identities=18%  Similarity=-0.070  Sum_probs=27.1

Q ss_pred             CCCCCCCcchhccceeeeeccccE-EEeeccCcccCCCC
Q 045532           27 FLPFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNG   64 (173)
Q Consensus        27 ~l~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~   64 (173)
                      +-+.+||.+||   ++.| ..|++ |+|..|.+..|..|
T Consensus         9 d~~~~LP~GWE---~~~d-~~Gr~YYvnh~tk~T~We~P   43 (60)
T 2yse_A            9 DSELELPAGWE---KIED-PVYGIYYVDHINRKTQYENP   43 (60)
T ss_dssp             CCCSSCCSSEE---EEEC-SSSCEEEEETTTTEEESSCH
T ss_pred             CCCCCCCCCcE---EEEC-CCCCEEEEeCCCCCeeccCC
Confidence            34578999998   8889 78999 66888876777664

>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}

Probab=96.84  E-value=0.0007  Score=45.24  Aligned_cols=36  Identities=8%  Similarity=-0.236  Sum_probs=30.1

Q ss_pred             CCCCCcchhccceeeeeccccE-EEeeccCcccCCCCCCC
Q 045532           29 PFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGNVP   67 (173)
Q Consensus        29 ~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~~p   67 (173)
                      +.+||.|||   .+.|-.+|++ |+|..|.+..|..|...
T Consensus         5 ~~~LP~GW~---~~~~~~~Gr~YY~N~~T~~sqWe~P~~~   41 (54)
T 2jv4_A            5 NTGLPAGWE---VRHSNSKNLPYYFNPATRESRWEPPADT   41 (54)
T ss_dssp             CCCCCSSCC---EEECSSSSCEEEEETTTTEEESSCCTTS
T ss_pred             CCCCCCCcE---EEEECCCCCEEEEECCCCcEEecCCCCc
Confidence            467999998   8889889999 77999988888877554

>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=96.77  E-value=0.0012  Score=43.28  Aligned_cols=34  Identities=12%  Similarity=-0.095  Sum_probs=26.4

Q ss_pred             CCCCCCcchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532           28 LPFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN   65 (173)
Q Consensus        28 l~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~   65 (173)
                      .+.+||.|||   ++.|- .|++ |+|..|.+..|..+.
T Consensus        10 ~~~~LP~GWe---~~~d~-~g~~YYvnh~t~~T~We~P~   44 (49)
T 2dwv_A           10 EREGLPPGWE---RVESS-EFGTYYVDHTNKRAQYRHPS   44 (49)
T ss_dssp             CSSCCCTTEE---EEEET-TTEEEEEETTTTEEESSCCC
T ss_pred             CCCCCCcCcE---EEECC-CCCEEEEECCCCCEeccCcC
Confidence            3568999999   88884 8999 668888767776654

>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}

Probab=96.67  E-value=0.0013  Score=43.93  Aligned_cols=33  Identities=6%  Similarity=-0.125  Sum_probs=25.7

Q ss_pred             CCCCCcchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532           29 PFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN   65 (173)
Q Consensus        29 ~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~   65 (173)
                      +.+||.+||   +++| .+|++ |+|..|.+..|..+.
T Consensus         9 ~~~LP~GWe---~~~~-~~G~~Yyinh~tk~TtwedPr   42 (54)
T 1wmv_A            9 AGDLPYGWE---QETD-ENGQVFFVDHINKRTTYLDPR   42 (54)
T ss_dssp             SSCSCTTEE---EEEC-TTSCEEEEESSSCCEESSCTT
T ss_pred             CCCCCcCcE---EEEC-CCCCEEEEeCCCCCEeecCCC
Confidence            458999999   8889 78999 668877767776653

>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1

Probab=96.61  E-value=0.0017  Score=43.89  Aligned_cols=35  Identities=17%  Similarity=0.050  Sum_probs=27.1

Q ss_pred             CCCCCCCcchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532           27 FLPFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN   65 (173)
Q Consensus        27 ~l~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~   65 (173)
                      ..+.+||.+||   ++.| .+|++ |+|..|.+..|..+.
T Consensus        10 ~~~~~LP~GWe---~~~~-~~Gr~Yyinh~tk~TtWe~Pr   45 (57)
T 2ysd_A           10 DNLGPLPENWE---MAYT-ENGEVYFIDHNTKTTSWLDPR   45 (57)
T ss_dssp             SCCCSCCSSEE---EEEC-SSCCEEEEETTTTEEESSCTT
T ss_pred             CCCCCCCcCcE---EEEC-CCCCEEEEECCCCcEecCCCC
Confidence            34568999999   7788 58999 668888777776654

>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*

Probab=96.35  E-value=0.0017  Score=41.29  Aligned_cols=37  Identities=11%  Similarity=0.070  Sum_probs=27.7

Q ss_pred             CCCCCcchhccceeeeeccccE-EEeeccCcccCCCCCCCcc
Q 045532           29 PFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGNVPKL   69 (173)
Q Consensus        29 ~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~~p~L   69 (173)
                      +.+||.|||   ...+ ..|++ |+|.-|.+..|..+....|
T Consensus         6 ~~~LP~GWe---~~~~-~~gr~y~~n~~t~~t~W~dPr~~~~   43 (46)
T 1jmq_A            6 DVPLPAGWE---MAKT-SSGQRYFKNHIDQTTTWQDPRKAML   43 (46)
T ss_dssp             SCCCCTTBC---CBCC-SSCCCBEEETTTTEEESSCTTTSSS
T ss_pred             CCCCCcCcE---EEEc-CCCceEEEEecCCceeecCCCchhh
Confidence            458999998   7778 88999 7788877677776654433

>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1

Probab=96.03  E-value=0.0036  Score=44.61  Aligned_cols=35  Identities=6%  Similarity=-0.036  Sum_probs=27.6

Q ss_pred             CCCCCcchhccceeeeeccccE-EEeeccCcccCCCCCCC
Q 045532           29 PFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGNVP   67 (173)
Q Consensus        29 ~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~~p   67 (173)
                      ..+||.+||   ++.| ..|++ |+|..|....|..+..+
T Consensus        10 ~~~LP~gWe---~~~~-~~Gr~Yy~n~~t~~t~W~~P~~~   45 (88)
T 1tk7_A           10 LGPLPDGWE---KKIQ-SDNRVYFVNHKNRTTQWEDPRTQ   45 (88)
T ss_dssp             TSSSSSSCC---EEEE-TTTEEEEEETTTTEEEEESCCCT
T ss_pred             cCCCCCCcE---EEEC-CCCCEEEEECCCCCeEeeccccc
Confidence            448999998   8888 78999 77988877777766443

>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}

Probab=96.03  E-value=0.002  Score=42.66  Aligned_cols=38  Identities=8%  Similarity=-0.164  Sum_probs=30.9

Q ss_pred             CCCCcchhccceeeeeccccE-EEeeccCcccCCCCCCCccc
Q 045532           30 FPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGNVPKLD   70 (173)
Q Consensus        30 ~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~~p~Ld   70 (173)
                      ..||.+||   .+.|-.+|+. |||..|.+..|..+..+..|
T Consensus         9 ~~LP~gW~---~~~~~~~gr~YY~N~~T~~SqWe~P~~~~~d   47 (52)
T 2jx8_A            9 ELVHAGWE---KCWSRRENRPYYFNRFTNQSLWEMPVLGQHD   47 (52)
T ss_dssp             HHHHHTCC---EEEETTTTEEEEEETTTTEEESSCCCCTTSC
T ss_pred             CCCCcCcE---EEEccccCCEEEEECCCCCEEeCCCCCCCCC
Confidence            35899997   8889899999 88999988888887665433

>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1

Probab=95.96  E-value=0.0061  Score=38.27  Aligned_cols=34  Identities=15%  Similarity=-0.046  Sum_probs=25.1

Q ss_pred             CCCCCCCcchhccceeeeeccccEEEeeccCcccCCCC
Q 045532           27 FLPFPHPRLAKALFSFYLKAGGGIYRCVHTAKMSRRNG   64 (173)
Q Consensus        27 ~l~~plP~~WE~~~q~LDlqSGkiyln~rt~kmS~~~~   64 (173)
                      .-+.+||.+||   ++.|-. |+-|+|..|....|..+
T Consensus         4 ~~~~~LP~GWe---~~~~~~-G~YY~n~~t~~tqWe~P   37 (39)
T 2ysc_A            4 GSSGGLPPGWR---KIHDAA-GTYYWHVPSGSTQWQRP   37 (39)
T ss_dssp             CCCCCCCTTEE---EEEETT-EEEEEESSSCCEESSCC
T ss_pred             CCCCCCCCCcE---EEEcCC-CCEEEEcCCCCEeccCC
Confidence            34568999998   787866 85578998876666544

>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*

Probab=95.77  E-value=0.0076  Score=43.11  Aligned_cols=35  Identities=14%  Similarity=0.102  Sum_probs=27.8

Q ss_pred             CCCCCCcchhccceeeeeccccE-EEeeccCcccCCCCCC
Q 045532           28 LPFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGNV   66 (173)
Q Consensus        28 l~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~~   66 (173)
                      -+.+||.+||   ++.| ..|++ |+|..|...+|..+..
T Consensus         6 ~~~~LP~gWe---~~~~-~~Gr~YY~n~~t~~t~W~~P~~   41 (90)
T 2kxq_A            6 SPPDLPEGYE---QRTT-QQGQVYFLHTQTGVSTWHDPRV   41 (90)
T ss_dssp             SCCSCCSSCE---EEEE-TTTEEEEEETTTTEEESSCSSS
T ss_pred             CCCCCCCCcE---EEEC-CCCCEEEEECCCCeEeeecccc
Confidence            3568999998   8888 68999 7798887788876643

>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A

Probab=95.66  E-value=0.0059  Score=38.17  Aligned_cols=30  Identities=13%  Similarity=0.025  Sum_probs=23.1

Q ss_pred             CCCcchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532           31 PHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN   65 (173)
Q Consensus        31 plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~   65 (173)
                      +||.+||   ++.|. .| + |+|..|....|..+.
T Consensus         3 ~LP~GWe---~~~d~-~g-~YY~n~~t~~tqWe~P~   33 (38)
T 2ho2_A            3 DLPAGWM---RVQDT-SG-TYYWHIPTGTTQWEPPG   33 (38)
T ss_dssp             CSCTTEE---EEECS-SC-EEEEETTTTEEESSCCC
T ss_pred             cCCCCce---EEEeC-CC-CEEEecCCCCEeccCCC
Confidence            6999998   88885 78 8 778888766666653

>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1

Probab=95.13  E-value=0.011  Score=42.06  Aligned_cols=32  Identities=19%  Similarity=0.107  Sum_probs=24.7

Q ss_pred             CCCCCcchhccceeeeeccccE-EEeeccCcccCCCC
Q 045532           29 PFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNG   64 (173)
Q Consensus        29 ~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~   64 (173)
                      +.+||.+||   ++.| ..|++ |+|..|.+..|..+
T Consensus        54 ~~~LP~gWe---~~~~-~~G~~Yy~nh~t~~ttw~~P   86 (88)
T 1tk7_A           54 EGPLPPGWE---IRYT-AAGERFFVDHNTRRTTFEDP   86 (88)
T ss_dssp             SCSSCSSCE---EEEE-TTTEEEEEETTTTEEESSSS
T ss_pred             ccccCCceE---EEEC-CCCCEEEEECCCCcEeCCCC
Confidence            458999998   7888 78999 77888876666543

>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*

Probab=95.05  E-value=0.013  Score=41.87  Aligned_cols=32  Identities=13%  Similarity=-0.009  Sum_probs=25.1

Q ss_pred             CCCCcchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532           30 FPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN   65 (173)
Q Consensus        30 ~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~   65 (173)
                      .+||.+||   .+.| ..|++ |+|..|.+..|..+.
T Consensus        54 ~~LP~gWe---~~~~-~~G~~Yy~n~~t~~t~w~~Pr   86 (90)
T 2kxq_A           54 GPLPPGWE---IRNT-ATGRVYFVDHNNRTTQFTDPR   86 (90)
T ss_dssp             CCCCSSCC---EEEC-TTSCEEEEETTTTEEESSCTT
T ss_pred             cccCCCce---EEEC-CCCCEEEEECCCCcEecCCCC
Confidence            47999998   7778 78999 778888767776553

>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...

Probab=94.67  E-value=0.013  Score=46.10  Aligned_cols=36  Identities=11%  Similarity=-0.045  Sum_probs=25.6

Q ss_pred             CCCCCcchhccceeeeeccccE-EEeeccCcccCCCCCCC
Q 045532           29 PFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGNVP   67 (173)
Q Consensus        29 ~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~~p   67 (173)
                      +-+||.+||   .+.|-.+|++ |+|..|.+..|..+..+
T Consensus         7 ~~~LP~gWe---~~~~~~~g~~yy~n~~t~~t~We~P~~~   43 (166)
T 3tc5_A            7 EEKLPPGWE---KAMSRSSGRVYYFNHITNASQWERPSGN   43 (166)
T ss_dssp             ---CCTTEE---EEECTTTCCEEEEETTTCCEESSCC---
T ss_pred             CCCCCCCce---EEEcCCCCCEEEEECCCCCEEecCCCCC
Confidence            468999998   8889889999 66888877778766443

>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1

Probab=94.51  E-value=0.035  Score=37.83  Aligned_cols=33  Identities=12%  Similarity=-0.026  Sum_probs=25.7

Q ss_pred             CCCCCCcchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532           28 LPFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN   65 (173)
Q Consensus        28 l~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~   65 (173)
                      .+-+||.|||   +..|- +| + |+|..|.+.-|..+.
T Consensus        16 ~~~~LPpGW~---~~~D~-sG-tYY~h~~T~tTQWerP~   49 (55)
T 2e45_A           16 TDSDLPAGWM---RVQDT-SG-TYYWHIPTGTTQWEPPG   49 (55)
T ss_dssp             SCSCCCTTEE---EEEET-TE-EEEEETTTCCEESSCCC
T ss_pred             CCCCCCCCCe---EeecC-CC-CEEEEcCCCCCccCCCC
Confidence            4558999998   88898 99 8 668888776666653

>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}

Probab=94.16  E-value=0.034  Score=42.24  Aligned_cols=33  Identities=9%  Similarity=-0.082  Sum_probs=24.9

Q ss_pred             CCCCCCcchhccceeeeeccccE-EEeeccCcccCCCC
Q 045532           28 LPFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNG   64 (173)
Q Consensus        28 l~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~   64 (173)
                      -+.+||.|||   ...|- +|++ |+|.-|.+..|..|
T Consensus        69 ~~~pLP~GWE---~r~d~-~Gr~YfIdH~tktTtW~dP  102 (109)
T 3l4h_A           69 TRLELPRGWE---IKTDQ-QGKSFFVDHNSRATTFIDP  102 (109)
T ss_dssp             TTSCCCTTEE---EEECT-TCCEEEEETTTTEEESSCS
T ss_pred             CCCCCCCCCe---EEECC-CCCEEEEeCCCCCEeeCCC
Confidence            3568999999   88887 8999 55666655666654

>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}

Probab=92.56  E-value=0.051  Score=38.95  Aligned_cols=35  Identities=9%  Similarity=-0.014  Sum_probs=27.7

Q ss_pred             CCCCCCcchhccceeeeeccccE-EEeeccCcccCCCCCC
Q 045532           28 LPFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGNV   66 (173)
Q Consensus        28 l~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~~   66 (173)
                      -+.+||.+|+   ++.|- .|++ |||..|....|..|..
T Consensus         8 ~~~~lp~~W~---e~~~~-~Gr~YYyN~~T~~s~We~P~~   43 (92)
T 2l5f_A            8 TASGAKSMWT---EHKSP-DGRTYYYNTETKQSTWEKPDD   43 (92)
T ss_dssp             STTBTTTTEE---EEECT-TSCEEEEETTTTEEESSCSGG
T ss_pred             cCCCCCCCcE---EEEcC-CCCEEEEECCCCceecccCcc
Confidence            4567999997   77776 8999 7799998777777643

>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1

Probab=91.18  E-value=0.18  Score=31.35  Aligned_cols=32  Identities=9%  Similarity=0.045  Sum_probs=24.4

Q ss_pred             CCCCcchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532           30 FPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN   65 (173)
Q Consensus        30 ~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~   65 (173)
                      .|+|.+|+   .+. ...|++ |||..|....|..|.
T Consensus         6 ~~~~~~W~---e~~-~~~G~~YYyN~~T~eS~We~P~   38 (40)
T 2ysi_A            6 SGTEEIWV---ENK-TPDGKVYYYNARTRESAWTKPD   38 (40)
T ss_dssp             CCCCCSEE---EEE-CTTSCEEEEETTTCCEESSCCS
T ss_pred             CCCCCCCE---EEE-CCCCCEEEEECCCCCEEeCCCC
Confidence            57888996   543 678999 889999877776653

>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1

Probab=90.77  E-value=0.077  Score=36.11  Aligned_cols=31  Identities=19%  Similarity=0.004  Sum_probs=23.5

Q ss_pred             CCCcchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532           31 PHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN   65 (173)
Q Consensus        31 plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~   65 (173)
                      .||.+||   .+.| ..|++ |+|..|....|..|.
T Consensus        40 ~lp~gW~---~~~~-~~Gr~Yy~n~~t~~t~W~~P~   71 (75)
T 1o6w_A           40 LRENGWK---AAKT-ADGKVYYYNPTTRETSWTIPA   71 (75)
T ss_dssp             HHHHTCE---EEEC-TTCCEEEEETTTTEEESSCCC
T ss_pred             CCCCeEE---EEEC-CCCCEEEEECCCCCEECCCCC
Confidence            4788998   6666 67999 779988767776653

>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}

Probab=86.96  E-value=0.26  Score=43.99  Aligned_cols=34  Identities=9%  Similarity=-0.059  Sum_probs=25.0

Q ss_pred             CCCCCCcchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532           28 LPFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN   65 (173)
Q Consensus        28 l~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~   65 (173)
                      ..-|||.|||   ...| .+|++ |++..|.++.|..|.
T Consensus         5 ~~~~lP~gWe---~~~~-~~g~~y~i~h~~~~t~w~~Pr   39 (429)
T 3olm_A            5 QLGPLPSGWE---MRLT-NTARVYFVDHNTKTTTWDDPR   39 (429)
T ss_dssp             CCCCCCTTCC---CCCS-SCCCCCEEETTTTEEESSCTT
T ss_pred             cCCCCCCCce---eEEC-CCCCeEEEeCCCcceeccCCC
Confidence            3458999999   7778 69999 556666557776553

>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A

Probab=85.81  E-value=0.32  Score=30.33  Aligned_cols=30  Identities=10%  Similarity=0.090  Sum_probs=19.9

Q ss_pred             CCCcchhccceeeeeccccE-EEeeccCcccCCCC
Q 045532           31 PHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNG   64 (173)
Q Consensus        31 plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~   64 (173)
                      ++|.+|+   .+. ...|+. |||..|....|..|
T Consensus         9 ~~~~~W~---e~~-~~~G~~YYyN~~T~eS~We~P   39 (41)
T 1ywi_A            9 SAKSMWT---EHK-SPDGRTYYYNTETKQSTWEKP   39 (41)
T ss_dssp             ---CCEE---EEE-ETTTEEEEEETTTTEEEESCC
T ss_pred             CCCCCcE---EEE-CCCCCEEEEECCCCCEEeCCC
Confidence            4577996   554 458999 88999976666554

>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E

Probab=84.88  E-value=0.4  Score=33.76  Aligned_cols=22  Identities=27%  Similarity=0.770  Sum_probs=18.3

Q ss_pred             eeCccceEEEEeeCCCCCCCCCCCcc
Q 045532          126 VGCPRCLMYVMLSEDDPKCPKCKSTV  151 (173)
Q Consensus       126 ~gC~~ClmYVMl~k~~P~CP~Cks~v  151 (173)
                      .+|.+|+..|    .+..||+|.+.-
T Consensus        12 ~AC~~C~~~~----~~~~CPnC~s~~   33 (69)
T 1ryq_A           12 KACRHCHYIT----SEDRCPVCGSRD   33 (69)
T ss_dssp             EEETTTCBEE----SSSSCTTTCCCC
T ss_pred             hhHHhCCccc----cCCcCCCccCCc
Confidence            5899999955    778999999764

>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1

Probab=84.79  E-value=0.52  Score=27.18  Aligned_cols=24  Identities=8%  Similarity=-0.024  Sum_probs=18.9

Q ss_pred             chhccceeeeeccccE-EEeeccCcccCCC
Q 045532           35 LAKALFSFYLKAGGGI-YRCVHTAKMSRRN   63 (173)
Q Consensus        35 ~WE~~~q~LDlqSGki-yln~rt~kmS~~~   63 (173)
                      +||     .|-.+|+. |||..|....|..
T Consensus         2 gWe-----~~~~~g~~YYyN~~T~~s~We~   26 (27)
T 1e0n_A            2 GWE-----IIHENGRPLYYNAEQKTKLHYP   26 (27)
T ss_dssp             CEE-----EEESSSSEEEEETTTTEEESSC
T ss_pred             CCe-----EECCCCCeEEEECCCCCEeccC
Confidence            684     79999999 8899997666543

>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A

Probab=84.60  E-value=0.17  Score=42.78  Aligned_cols=35  Identities=11%  Similarity=-0.063  Sum_probs=25.9

Q ss_pred             CCCCCCCcchhccceeeeeccccEEE-eeccCcccCCCCC
Q 045532           27 FLPFPHPRLAKALFSFYLKAGGGIYR-CVHTAKMSRRNGN   65 (173)
Q Consensus        27 ~l~~plP~~WE~~~q~LDlqSGkiyl-n~rt~kmS~~~~~   65 (173)
                      |+..|||.+||   ++.+ ..|+.|| |-.|.++.|..|+
T Consensus         7 ~~~~~l~~~we---~~~~-~~~~~y~~~h~~~tt~w~~p~   42 (261)
T 1eg3_A            7 FLSTSVQGPWE---RAIS-PNKVPYYINHETQTTCWDHPK   42 (261)
T ss_dssp             HHHTTCCTTEE---EEEC-TTSCEEEEETTTTEEESSCHH
T ss_pred             ccCCCCCCCcc---eeEC-CCCCeEeecCCcccccCCCCc
Confidence            55679999999   7877 5899955 6666667776543

>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}

Probab=83.33  E-value=0.67  Score=31.69  Aligned_cols=31  Identities=10%  Similarity=-0.083  Sum_probs=23.1

Q ss_pred             CCCCcchhccceeeeeccccE-EEeeccCcccCCCC
Q 045532           30 FPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNG   64 (173)
Q Consensus        30 ~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~   64 (173)
                      .++|.+|+   .+.|- .|++ |||..|....|..|
T Consensus        42 ~~~~~~W~---~~~~~-~Gr~YyyN~~T~~s~We~P   73 (75)
T 2jxw_A           42 TAVKTVWV---EGLSE-DGFTYYYNTETGESRWEKP   73 (75)
T ss_dssp             SSCCCSEE---EEEET-TTEEEEEETTTTEEESSCC
T ss_pred             cCCCccEE---EEECC-CCCEEEEECcCCCEeccCc
Confidence            36788997   66665 7999 88999876666554

>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A

Probab=82.18  E-value=0.87  Score=27.56  Aligned_cols=31  Identities=13%  Similarity=0.048  Sum_probs=21.9

Q ss_pred             CCCcchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532           31 PHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN   65 (173)
Q Consensus        31 plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~   65 (173)
                      +...+|+   .+.+ ..|+. |||..|....|..|.
T Consensus         3 ~~~~~W~---e~~~-~~G~~YYyN~~T~es~We~P~   34 (37)
T 1e0l_A            3 TAVSEWT---EYKT-ADGKTYYYNNRTLESTWEKPQ   34 (37)
T ss_dssp             SSSCSCE---EEEC-TTSCEEEEETTTTEEESSCCS
T ss_pred             CCCCCeE---EEEC-CCCCEEEEECCCCCEEecCCC
Confidence            3455895   5555 45999 889999877776654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	173
d1pina1	34	Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId	97.73
d1jmqa_	46	Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606	97.47
d2jmfa1	33	Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Dr	97.41
d1i5hw_	50	Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus n	97.05
d1tk7a1	45	Suppressor of deltex (Cg4244-pb) {Fruit fly (Droso	96.94
d2rm0w1	37	Formin binding protein FBP28 domain {Domestic mous	92.27

>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Mitotic rotamase PIN1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=7.2e-06  Score=48.97  Aligned_cols=32  Identities=13%  Similarity=0.029  Sum_probs=28.0

Q ss_pred             CCCcchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532           31 PHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN   65 (173)
Q Consensus        31 plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~   65 (173)
                      .||.|||   +++|-.+|++ |+|..|..++|..|.
T Consensus         1 ~LP~GW~---~~~d~~~G~~YY~n~~T~~T~W~~Pt   33 (34)
T d1pina1           1 KLPPGWE---KRMSRSSGRVYYFNHITNASQWERPS   33 (34)
T ss_dssp             CCCTTEE---EEECTTSCCEEEEETTTCCEESSCSC
T ss_pred             CcCCCcE---EEECCCCCCEEEEECCCCCEEccCCC
Confidence            5899998   9999999999 779999888887764

>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Yap65 ww domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=2.2e-05  Score=49.94  Aligned_cols=34  Identities=9%  Similarity=0.025  Sum_probs=27.9

Q ss_pred             CCCCCCcchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532           28 LPFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN   65 (173)
Q Consensus        28 l~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~   65 (173)
                      .+.|||.|||   ++.| +.|++ |+|..|.++.|..+.
T Consensus         5 ~~~~LP~GWe---~~~d-~~G~~Yyinh~t~~T~w~~Pr   39 (46)
T d1jmqa_           5 DDVPLPAGWE---MAKT-SSGQRYFKNHIDQTTTWQDPR   39 (46)
T ss_dssp             SSCCCCTTBC---CBCC-SSCCCBEEETTTTEEESSCTT
T ss_pred             ccCCCCCCce---EEEC-CCCCEEEEECCCCCEecCCCC
Confidence            3568999998   8889 58999 779888878887664

>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.41  E-value=3.8e-05  Score=45.79  Aligned_cols=30  Identities=20%  Similarity=0.177  Sum_probs=23.9

Q ss_pred             CCCcchhccceeeeeccccE-EEeeccCcccCCCC
Q 045532           31 PHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNG   64 (173)
Q Consensus        31 plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~   64 (173)
                      |||.|||   ++.| .+|++ |+|-.|....|..|
T Consensus         2 pLP~GWe---~~~d-~~G~~Yyinh~t~~T~w~~P   32 (33)
T d2jmfa1           2 PLPPGWE---IRYT-AAGERFFVDHNTRRTTFEDP   32 (33)
T ss_dssp             CCCTTEE---EEEC-TTSCEEEEETTTCCEESSCC
T ss_pred             ccCCCee---EEEC-CCCCEEEEECCCCcEecCCC
Confidence            7999998   8999 69999 66877766666544

>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.05  E-value=0.00021  Score=45.97  Aligned_cols=34  Identities=12%  Similarity=-0.014  Sum_probs=26.9

Q ss_pred             CCCCCCcchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532           28 LPFPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN   65 (173)
Q Consensus        28 l~~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~   65 (173)
                      ..-|||.+||   ++.| ..|++ |+|..|....|..+.
T Consensus         8 ~~~pLP~gWe---~~~~-~~G~~YY~nh~t~~T~w~~Pr   42 (50)
T d1i5hw_           8 DLGPLPPGWE---ERTH-TDGRVFFINHNIKKTQWEDPR   42 (50)
T ss_dssp             CCSSCSTTEE---EEEC-TTSCEEEEETTTTEEESSCTT
T ss_pred             CCCCCCCCce---EEEC-CCCCEEEEECCCCCEeCCCCC
Confidence            3448999998   8889 57999 779888777776653

>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Suppressor of deltex (Cg4244-pb)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.94  E-value=0.00016  Score=45.64  Aligned_cols=30  Identities=7%  Similarity=0.028  Sum_probs=24.5

Q ss_pred             CCCcchhccceeeeeccccE-EEeeccCcccCCCC
Q 045532           31 PHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNG   64 (173)
Q Consensus        31 plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~   64 (173)
                      |||.+||   ++.|- .|++ |+|..|.++.|..+
T Consensus        12 pLP~GWe---~~~d~-~G~~Yyinh~t~~T~w~~P   42 (45)
T d1tk7a1          12 PLPDGWE---KKIQS-DNRVYFVNHKNRTTQWEDP   42 (45)
T ss_dssp             SSSSSCC---EEEET-TTEEEEEETTTTEEEEESC
T ss_pred             CCCCCce---EEECC-CCCEEEEECCCCCEECCCC
Confidence            8999998   88895 7999 66888877777654

>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Formin binding protein FBP28 domain
species: Domestic mouse (Mus musculus) [TaxId: 10090]

Probab=92.27  E-value=0.05  Score=32.47  Aligned_cols=32  Identities=13%  Similarity=0.022  Sum_probs=25.0

Q ss_pred             CCCCcchhccceeeeeccccE-EEeeccCcccCCCCC
Q 045532           30 FPHPRLAKALFSFYLKAGGGI-YRCVHTAKMSRRNGN   65 (173)
Q Consensus        30 ~plP~~WE~~~q~LDlqSGki-yln~rt~kmS~~~~~   65 (173)
                      .+.+.+|+   .+-| ..|++ |+|..|...+|..|.
T Consensus         2 A~~~s~W~---e~~~-~~Gr~YY~N~~T~~s~We~P~   34 (37)
T d2rm0w1           2 ATAVSEWT---EYKT-ADGKTYYYNNRTLESTWEKPQ   34 (37)
T ss_dssp             CCCSCCEE---EEEC-TTCCEEEEETTTTEEESSCCS
T ss_pred             CCCccCCE---EEEC-CCCCEEEEECCCCCEeCCCcc
Confidence            46788997   6766 68999 779999877777664