Citrus Sinensis ID: 045535

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100
Protein Sequence
LLDNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSLTGNAPKLLDYLGAVAVIIGFGGINIPDGALSRSKDASLELETENASSSEQEHTSLQQDTT
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHcccHHHHEccEEHcHHHHHHHHHHcccccHHHHHHHHHHHHHHEEEEcccccccccccccEcccccccccccccccccccccc
Coil and Loop (DISEMBL)
LLDNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSLTGNAPKLLDYLGAVAVIIgfgginipdgalsrskdasleletenassseqehtslqqdtt
Flexible Loop (DISEMBL)
LLDNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSLTGNAPKLLDYLGAVAVIIGFGGINIPDGALSRSKDASLELEtenassseqehtslqqdtt
Low Complexity Region (SEG)
LLDNVLSDYlwakavllttatvatagltIQVPLAAVVDSLTGNAPKLLDYLgavaviigfgginiPDGALSRSKDASLELETENASSSEQEHTSLQQDTT
Disordered region (IsUnstruct)
***NVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSLTGNAPKLLDYLGAVAVIIGFGGINIPD*********************************
Disordered Region (DISOPRED)
LLDNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSLTGNAPKLLDYLGAVAVIIGFGGINI***********************************
Disordered Region (DISEMBL)
LLDNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSLTGNAPKLLDYLGAVAVIIGFGGINIPDGALSRS***************************
Disordered Region (DISPRO)
LLDNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSLTGNAPKLLDYLGAVAVIIGFGGINIPDGAL******************************
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
LLDNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSLTGNAPKLLDYLGAVAVIIGFGGINIPDGALSRSKDASLELETENASSSEQEHTSLQQDTT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
297744350	390	unnamed protein product [Vitis vinifera]	0.99	0.253	0.72	1e-33
147789786	413	hypothetical protein VITISV_001016 [Viti	0.99	0.239	0.72	2e-33
225465455	435	PREDICTED: solute carrier family 35 memb	0.99	0.227	0.72	2e-33
363807016	438	uncharacterized protein LOC100788015 [Gl	0.99	0.226	0.67	1e-30
224132196	434	predicted protein [Populus trichocarpa]	1.0	0.230	0.73	2e-27
224077934	105	predicted protein [Populus trichocarpa]	1.0	0.952	0.73	3e-27
357505295	441	Solute carrier family 35 member F5 [Medi	0.92	0.208	0.655	4e-27
449453262	424	PREDICTED: solute carrier family 35 memb	0.98	0.231	0.737	6e-25
449521826	424	PREDICTED: solute carrier family 35 memb	0.98	0.231	0.737	6e-25
148910043	429	unknown [Picea sitchensis]	0.89	0.207	0.630	5e-23

>gi|297744350|emb|CBI37320.3| unnamed protein product [Vitis vinifera]

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 72/100 (72%), Positives = 84/100 (84%), Gaps = 1/100 (1%)

Query: 1   LLDNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSLTGNAPKLLDYLGAVAVIIGF 60
           LLDNVLSDYLWAKA+LLT+ TVATAGLTIQVPLAAVVDSLTGNAP  +DY+GA AV+ GF
Sbjct: 288 LLDNVLSDYLWAKAILLTSTTVATAGLTIQVPLAAVVDSLTGNAPNFMDYIGAAAVMAGF 347

Query: 61  GGINIPDGALSRSKDASLELETENASSSEQEHT-SLQQDT 99
            GINIP     RSK+A +ELE EN SS++Q+HT S+ +DT
Sbjct: 348 AGINIPIDDFCRSKEAGIELEKENISSTDQDHTLSIHKDT 387

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147789786|emb|CAN74056.1| hypothetical protein VITISV_001016 [Vitis vinifera]

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/100 (72%), Positives = 84/100 (84%), Gaps = 1/100 (1%)

Query: 1   LLDNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSLTGNAPKLLDYLGAVAVIIGF 60
           LLDNVLSDYLWAKA+LLT+ TVATAGLTIQVPLAAVVDSLTGNAP  +DY+GA AV+ GF
Sbjct: 311 LLDNVLSDYLWAKAILLTSTTVATAGLTIQVPLAAVVDSLTGNAPNFMDYIGAAAVMAGF 370

Query: 61  GGINIPDGALSRSKDASLELETENASSSEQEHT-SLQQDT 99
            GINIP     RSK+A +ELE EN SS++Q+HT S+ +DT
Sbjct: 371 AGINIPIDDFCRSKEAGIELEKENISSTDQDHTLSIHKDT 410

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465455|ref|XP_002267492.1| PREDICTED: solute carrier family 35 member F5 [Vitis vinifera]

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/100 (72%), Positives = 84/100 (84%), Gaps = 1/100 (1%)

Query: 1   LLDNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSLTGNAPKLLDYLGAVAVIIGF 60
           LLDNVLSDYLWAKA+LLT+ TVATAGLTIQVPLAAVVDSLTGNAP  +DY+GA AV+ GF
Sbjct: 333 LLDNVLSDYLWAKAILLTSTTVATAGLTIQVPLAAVVDSLTGNAPNFMDYIGAAAVMAGF 392

Query: 61  GGINIPDGALSRSKDASLELETENASSSEQEHT-SLQQDT 99
            GINIP     RSK+A +ELE EN SS++Q+HT S+ +DT
Sbjct: 393 AGINIPIDDFCRSKEAGIELEKENISSTDQDHTLSIHKDT 432

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807016|ref|NP_001242065.1| uncharacterized protein LOC100788015 [Glycine max] gi|255644378|gb|ACU22694.1| unknown [Glycine max]

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 67/100 (67%), Positives = 83/100 (83%), Gaps = 1/100 (1%)

Query: 1   LLDNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSLTGNAPKLLDYLGAVAVIIGF 60
           LLDNVLSDYLWAKAVLLT+ TVATAGLTIQVPLAA+VD+LTGNAP+ +DYLGA+AV+IGF
Sbjct: 335 LLDNVLSDYLWAKAVLLTSTTVATAGLTIQVPLAAIVDTLTGNAPRFMDYLGAIAVMIGF 394

Query: 61  GGINIPDGALSRSKDASLELETENASSSEQEHT-SLQQDT 99
            GINIP    S+S + ++ LE EN ++  +E T S+ QD+
Sbjct: 395 TGINIPSDTFSKSTETTVALENENLNTRTEELTLSISQDS 434

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132196|ref|XP_002321279.1| predicted protein [Populus trichocarpa] gi|222862052|gb|EEE99594.1| predicted protein [Populus trichocarpa]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/100 (73%), Positives = 83/100 (83%)

Query: 1   LLDNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSLTGNAPKLLDYLGAVAVIIGF 60
           LLDNVLSDYLWAKAVLLTT TVATAGL+IQVPLAA+VDS  GNAP+L+D LGA+AV+IGF
Sbjct: 332 LLDNVLSDYLWAKAVLLTTTTVATAGLSIQVPLAAIVDSFIGNAPRLMDGLGALAVLIGF 391

Query: 61  GGINIPDGALSRSKDASLELETENASSSEQEHTSLQQDTT 100
            GINIP  A SRSK AS+ELE EN  S++Q+  SL Q T 
Sbjct: 392 VGINIPSDAFSRSKGASIELENENVRSTDQDRVSLPQTTV 431

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077934|ref|XP_002335775.1| predicted protein [Populus trichocarpa] gi|222834736|gb|EEE73199.1| predicted protein [Populus trichocarpa]

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/100 (73%), Positives = 83/100 (83%)

Query: 1   LLDNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSLTGNAPKLLDYLGAVAVIIGF 60
           LLDNVLSDYLWAKAVLLTT TVATAGL+IQVPLAA+VDS  GNAP+L+D LGA+AV+IGF
Sbjct: 3   LLDNVLSDYLWAKAVLLTTTTVATAGLSIQVPLAAIVDSFIGNAPRLMDGLGALAVLIGF 62

Query: 61  GGINIPDGALSRSKDASLELETENASSSEQEHTSLQQDTT 100
            GINIP  A SRSK AS+ELE EN  S++Q+  SL Q T 
Sbjct: 63  VGINIPSDAFSRSKGASIELENENVRSTDQDRVSLPQTTV 102

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357505295|ref|XP_003622936.1| Solute carrier family 35 member F5 [Medicago truncatula] gi|355497951|gb|AES79154.1| Solute carrier family 35 member F5 [Medicago truncatula]

 Score =  125 bits (313), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 61/93 (65%), Positives = 78/93 (83%), Gaps = 1/93 (1%)

Query: 1   LLDNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSLTGNAPKLLDYLGAVAVIIGF 60
           LLDNVLSDYLWAKAVLLT+ TVATAGLTIQVPLAA+VD++TG++P  ++YLGAVAV+IGF
Sbjct: 334 LLDNVLSDYLWAKAVLLTSTTVATAGLTIQVPLAAIVDTITGHSPPFMNYLGAVAVMIGF 393

Query: 61  GGINIPDGALSRS-KDASLELETENASSSEQEH 92
            GINIP    S+S K  ++EL+ E+ +  ++EH
Sbjct: 394 AGINIPAEIFSKSTKTTAVELKNEDVNIRDEEH 426

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453262|ref|XP_004144377.1| PREDICTED: solute carrier family 35 member F5-like [Cucumis sativus]

 Score =  117 bits (294), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 73/99 (73%), Positives = 83/99 (83%), Gaps = 1/99 (1%)

Query: 1   LLDNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSLTGNAPKLLDYLGAVAVIIGF 60
           LLDNVLSDYLWAKAVLLTT TVATAGLTIQVPLAA+VDS+TGNAP L+DYLGAVAV+IGF
Sbjct: 319 LLDNVLSDYLWAKAVLLTTTTVATAGLTIQVPLAAIVDSITGNAPHLMDYLGAVAVMIGF 378

Query: 61  GGINIPDGALSRSKDASLELETENASSSEQEH-TSLQQD 98
            GINIP    S SKD S+EL +E+  S +  H TS++QD
Sbjct: 379 VGINIPSDVFSFSKDGSIELPSEDVISDDHNHTTSIRQD 417

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449521826|ref|XP_004167930.1| PREDICTED: solute carrier family 35 member F5-like [Cucumis sativus]

 Score =  117 bits (294), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 73/99 (73%), Positives = 83/99 (83%), Gaps = 1/99 (1%)

Query: 1   LLDNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSLTGNAPKLLDYLGAVAVIIGF 60
           LLDNVLSDYLWAKAVLLTT TVATAGLTIQVPLAA+VDS+TGNAP L+DYLGAVAV+IGF
Sbjct: 319 LLDNVLSDYLWAKAVLLTTTTVATAGLTIQVPLAAIVDSITGNAPHLMDYLGAVAVMIGF 378

Query: 61  GGINIPDGALSRSKDASLELETENASSSEQEH-TSLQQD 98
            GINIP    S SKD S+EL +E+  S +  H TS++QD
Sbjct: 379 VGINIPSDVFSFSKDGSIELPSEDVISDDHNHTTSIRQD 417

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148910043|gb|ABR18105.1| unknown [Picea sitchensis]

 Score =  111 bits (278), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 58/92 (63%), Positives = 69/92 (75%), Gaps = 3/92 (3%)

Query: 1   LLDNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSLTGNAPKLLDYLGAVAVIIGF 60
           LLDNVLSDYLWAKAVLLTT TVATAGLTIQVP+AA+VDSL GN P+LLDYLG  AV++GF
Sbjct: 332 LLDNVLSDYLWAKAVLLTTPTVATAGLTIQVPMAALVDSLRGNLPQLLDYLGGAAVLVGF 391

Query: 61  GGINIP---DGALSRSKDASLELETENASSSE 89
            GIN P     A S  K+   + + +N +  +
Sbjct: 392 FGINQPAIHCCASSEDKEVCNDFDPQNGNKHD 423

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
TAIR|locus:2098575	438	AT3G07080 "AT3G07080" [Arabido	0.81	0.184	0.382	2.9e-09

TAIR|locus:2098575 AT3G07080 "AT3G07080" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 31/81 (38%), Positives = 38/81 (46%)

Query:     1 LLDNVLSDYXXXXXXXXXXXXXXXXXXXIQVPLAAVVDSLTGNAPKLLDYLXXXXXXXXX 60
             LLDNVLSDY                   IQVPLAA+VDSL+GN P   DY+         
Sbjct:   333 LLDNVLSDYLWAKAVLLTTTTVATAGLTIQVPLAAIVDSLSGNKPSFTDYIGAAAVMVGF 392

Query:    61 XXXXXPDGALSRSKDASLELE 81
                  P     +SK+ ++ELE
Sbjct:   393 AGINIPSEMFCKSKETAIELE 413


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.304   0.123   0.316    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      100        67   0.00091  102 3  10 23  0.39    29
                                                     29  0.49    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  454 (48 KB)
  Total size of DFA:  91 KB (2069 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:02
  No. of threads or processors used:  24
  Search cpu time:  9.78u 0.08s 9.86t   Elapsed:  00:00:03
  Total cpu time:  9.78u 0.08s 9.86t   Elapsed:  00:00:05
  Start:  Thu May  9 17:01:22 2013   End:  Thu May  9 17:01:27 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

GO:0006007 "glucose catabolic process" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00033850001 SubName- Full=Chromosome undetermined scaffold_70, whole genome shotgun sequence; (435 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	100
KOG2765	416	consensus Predicted membrane protein [Function unk	99.94
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.15
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	97.1
PRK10532	293	threonine and homoserine efflux system; Provisiona	97.07
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.05
PLN00411	358	nodulin MtN21 family protein; Provisional	96.96
COG0697	292	RhaT Permeases of the drug/metabolite transporter	96.87
PRK11689	295	aromatic amino acid exporter; Provisional	96.82
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	96.6
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	96.38
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	96.25
PRK11272	292	putative DMT superfamily transporter inner membran	95.62
PF13536	113	EmrE: Multidrug resistance efflux transporter	95.32
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	94.55
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	93.98
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	93.6
PRK15430	296	putative chloramphenical resistance permease RarD;	93.5
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	93.34
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	92.54
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	91.82
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	91.67
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	91.48
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	91.14
PRK13499	345	rhamnose-proton symporter; Provisional	91.02
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	90.13
PRK09541	110	emrE multidrug efflux protein; Reviewed	89.15
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	87.6
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	86.86
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	86.58
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	84.89
COG0697	292	RhaT Permeases of the drug/metabolite transporter	80.8

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.94  E-value=5.1e-28  Score=200.64  Aligned_cols=82  Identities=39%  Similarity=0.679  Sum_probs=77.0

Q ss_pred             ChhHHHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeeccCCccccccchhhh
Q 045535            1 LLDNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIPDGALSRSKDASLE   79 (100)
Q Consensus         1 ll~tvlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~~~~~~~~~~~~~e   79 (100)
                      ++|||+|||||++||+|||||++|+|||+||||||++|++ +|++++++|++||++|++||+++|+..+...+.++.+.|
T Consensus       325 ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~~~~~~~~~~~  404 (416)
T KOG2765|consen  325 LIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSENSKKDPLMAIE  404 (416)
T ss_pred             HHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccccccccchhee
Confidence            5899999999999999999999999999999999999998 899999999999999999999999988888888888766


Q ss_pred             hhh
Q 045535           80 LET   82 (100)
Q Consensus        80 ~e~   82 (100)
                      .+.
T Consensus       405 r~~  407 (416)
T KOG2765|consen  405 REP  407 (416)
T ss_pred             ecc
Confidence            654

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.15  E-value=9.6e-11  Score=95.01  Aligned_cols=89  Identities=19%  Similarity=0.157  Sum_probs=72.4

Q ss_pred             hHHHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeeccCCccccccchhhhhh
Q 045535            3 DNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIPDGALSRSKDASLELE   81 (100)
Q Consensus         3 ~tvlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~~~~~~~~~~~~~e~e   81 (100)
                      +.++.+.++...+.++||++.++||..+.|.|++.|++ +|..++|+|++|.++|++||++.|..+++++++++.+.++|
T Consensus       242 ~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~~~~~~~~~~  321 (334)
T PF06027_consen  242 CLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEEARRNERKQE  321 (334)
T ss_pred             HHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccccchhhcccc
Confidence            34555667777788999999999999999999999998 78899999999999999999999998888776655554555


Q ss_pred             hccCCCCCCC
Q 045535           82 TENASSSEQE   91 (100)
Q Consensus        82 ~~~~~~~~~~   91 (100)
                      .++..+.|+.
T Consensus       322 ~~~~~~~~~~  331 (334)
T PF06027_consen  322 LEEGQDEDGP  331 (334)
T ss_pred             cccccccccc
Confidence            5544444443

Some of the sequences in this family are annotated as putative membrane proteins.

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=97.10  E-value=0.0018  Score=41.52  Aligned_cols=63  Identities=24%  Similarity=0.327  Sum_probs=57.2

Q ss_pred             hhHHHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheee
Q 045535            2 LDNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGIN   64 (100)
Q Consensus         2 l~tvlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in   64 (100)
                      +++.++-++|.+|+-.++|-.+++-..+...++++..++ .++.+++..++|.+++++|.++++
T Consensus        62 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   62 LGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             cceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            346778899999999999999999999999999999988 688999999999999999988765

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=97.07  E-value=0.0022  Score=49.34  Aligned_cols=74  Identities=20%  Similarity=0.185  Sum_probs=65.5

Q ss_pred             hhHHHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeeccCCccccccc
Q 045535            2 LDNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIPDGALSRSKD   75 (100)
Q Consensus         2 l~tvlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~~~~~~~~~~   75 (100)
                      ++++++=++|.+++=..+|..+++-..+.-+.|.+..++ .|..+++..++|+++|+.|-+...+..++|.|.||
T Consensus       217 ~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~~~~  291 (293)
T PRK10532        217 LSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPKIKE  291 (293)
T ss_pred             HHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence            567888889999999999999999999999999999998 79999999999999999999999876655555444

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.05  E-value=0.0016  Score=50.46  Aligned_cols=65  Identities=17%  Similarity=0.186  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeeccCC
Q 045535            4 NVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIPDG   68 (100)
Q Consensus         4 tvlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~~~   68 (100)
                      ..+..+++.+.+-.++|++.|+..++--+++++..++ .|+++++.+|+|.++|+.|..+-+...+
T Consensus       235 ~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~  300 (303)
T PF08449_consen  235 GALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKK  300 (303)
T ss_pred             HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhc
Confidence            3556667777778999999999999999999999998 7999999999999999999999887443

; GO: 0055085 transmembrane transport

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=96.96  E-value=0.0023  Score=52.03  Aligned_cols=69  Identities=10%  Similarity=0.105  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeeccCCcccc
Q 045535            4 NVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIPDGALSR   72 (100)
Q Consensus         4 tvlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~~~~~~~   72 (100)
                      +.++=++|.+++=...|..+++=+.+.-.++++..++ .|.++++..++|+++|+.|..++++...+|.|
T Consensus       266 t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~  335 (358)
T PLN00411        266 TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEK  335 (358)
T ss_pred             HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            3456678999999999999999999998899999998 79999999999999999999999975544433

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=96.87  E-value=0.0045  Score=44.81  Aligned_cols=65  Identities=23%  Similarity=0.279  Sum_probs=58.3

Q ss_pred             hhHHHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeecc
Q 045535            2 LDNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIP   66 (100)
Q Consensus         2 l~tvlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~   66 (100)
                      +++.++-++|.+++-+.++..++.-..+.++.+++.+++ .+..++...++|+++++.|.++++..
T Consensus       223 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         223 FSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            455688999999999999999998888888888887887 79999999999999999999999985

>PRK11689 aromatic amino acid exporter; Provisional

Probab=96.82  E-value=0.0042  Score=47.83  Aligned_cols=64  Identities=14%  Similarity=0.088  Sum_probs=58.7

Q ss_pred             hHHHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeecc
Q 045535            3 DNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIP   66 (100)
Q Consensus         3 ~tvlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~   66 (100)
                      .+.++-++|.+++=..+|..+++-..+.-.+|++..++ .|..+++..++|+++|+.|.++..+.
T Consensus       224 ~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~  288 (295)
T PRK11689        224 AMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLA  288 (295)
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhh
Confidence            57889999999999999999999999999999999998 79999999999999999998887653

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=96.60  E-value=0.015  Score=39.66  Aligned_cols=62  Identities=15%  Similarity=0.113  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeec
Q 045535            4 NVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINI   65 (100)
Q Consensus         4 tvlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~   65 (100)
                      .++-.+...+.+-.|||++.++.-.+-.++.++..++ .|.+.++..++|.++.++|++..++
T Consensus        91 ~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen   91 AFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             HHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence            3456677777888999999999999999999999998 7888999999999999999988764

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=96.38  E-value=0.014  Score=42.86  Aligned_cols=59  Identities=20%  Similarity=0.360  Sum_probs=54.9

Q ss_pred             hhHHHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHh
Q 045535            2 LDNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGF   60 (100)
Q Consensus         2 l~tvlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF   60 (100)
                      ++++++.++|.+|+-.++|..+++=..+..+++++.+++ .|.+++...++|+++++.|.
T Consensus       200 ~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       200 IGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            467899999999999999999999999999999999997 78899999999999999875

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=96.25  E-value=0.003  Score=50.92  Aligned_cols=59  Identities=22%  Similarity=0.232  Sum_probs=54.1

Q ss_pred             HHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeeccCCccc
Q 045535           13 KAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIPDGALS   71 (100)
Q Consensus        13 ~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~~~~~~   71 (100)
                      .++.|+.|++-++|+-..||..-..|.+ ++-.++.+++.|.+++.+||+++=++.++.+
T Consensus       223 ~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~d~~e  282 (290)
T KOG4314|consen  223 FGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPEDKDE  282 (290)
T ss_pred             ehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecccchhh
Confidence            4678999999999999999999999999 6889999999999999999999999776654

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=95.62  E-value=0.036  Score=42.54  Aligned_cols=65  Identities=8%  Similarity=0.123  Sum_probs=59.5

Q ss_pred             hhHHHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeecc
Q 045535            2 LDNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIP   66 (100)
Q Consensus         2 l~tvlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~   66 (100)
                      ++++++-++|.+++=..+|-.+++=..+.-+.+++..++ .|..+++..++|+++++.|.++.++.
T Consensus       221 ~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~  286 (292)
T PRK11272        221 FGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG  286 (292)
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            467888999999999999999999999999999999998 68899999999999999999998763

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=95.32  E-value=0.092  Score=35.25  Aligned_cols=62  Identities=18%  Similarity=0.166  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeeccC
Q 045535            5 VLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIPD   67 (100)
Q Consensus         5 vlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~~   67 (100)
                      .++=.+|.+|+-.+.+ .+++..+++..++++.-.+ .++..+..-++|++++++|.++++++.
T Consensus        46 ~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~  108 (113)
T PF13536_consen   46 GVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSD  108 (113)
T ss_pred             HHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence            4566788889888875 7778888888889988887 788999999999999999999999854

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=94.55  E-value=0.028  Score=43.03  Aligned_cols=57  Identities=14%  Similarity=0.021  Sum_probs=47.3

Q ss_pred             HHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeecc
Q 045535           10 LWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIP   66 (100)
Q Consensus        10 lW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~   66 (100)
                      +|.+++=.+||..+++-..+--..+++..++ .|.+.++..++|+++++.|..+.+..
T Consensus       237 ~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~  294 (302)
T TIGR00817       237 VAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRV  294 (302)
T ss_pred             HHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence            3445566899999999977766677777887 79999999999999999999999873

specificities overlap.

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=93.98  E-value=0.36  Score=34.39  Aligned_cols=66  Identities=21%  Similarity=0.197  Sum_probs=43.0

Q ss_pred             hhHHHHHHHHHHHHHhhhhHHHhhhhhhhhh-HHHHHHH---HhCCCCcHHHHHHHHHHHHHhheeeccCC
Q 045535            2 LDNVLSDYLWAKAVLLTTATVATAGLTIQVP-LAAVVDS---LTGNAPKLLDYLGAVAVIIGFGGINIPDG   68 (100)
Q Consensus         2 l~tvlSDylW~~A~lLTSPLvaTlGLSLTIP-LAml~D~---l~~~~~s~~y~lGa~lV~~sF~~in~~~~   68 (100)
                      +...+|=++|.+++=. -|+-..-.+...+| +..+.=+   +.|.+.++.-++|.++|++|.++++..++
T Consensus        56 ~~~~la~~~w~~aL~~-~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~  125 (129)
T PRK02971         56 AGYALSMLCWLKALRY-LPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT  125 (129)
T ss_pred             HHHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence            3456677788887643 33333333322222 3333333   47889999999999999999999997544

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=93.60  E-value=0.29  Score=37.65  Aligned_cols=66  Identities=12%  Similarity=0.074  Sum_probs=53.3

Q ss_pred             hhHHHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeeccC
Q 045535            2 LDNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIPD   67 (100)
Q Consensus         2 l~tvlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~~   67 (100)
                      +++++.=++|.+++=...|..+++=..+.-..|.+..++ .|..+++..++|+++|++|.++.++..
T Consensus       223 ~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~  289 (299)
T PRK11453        223 VATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL  289 (299)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence            567777888988887778877777555665677888887 799999999999999999998776633

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=93.50  E-value=0.17  Score=38.95  Aligned_cols=65  Identities=8%  Similarity=-0.038  Sum_probs=57.8

Q ss_pred             hHHHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeeccC
Q 045535            3 DNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIPD   67 (100)
Q Consensus         3 ~tvlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~~   67 (100)
                      .+.++=++|.+|+=..+|-.+++=..+.-+++.+..++ .|..+++..++|.++|+++..++..++
T Consensus       222 ~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~  287 (296)
T PRK15430        222 VTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDA  287 (296)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            35577889999999999999999999999999999987 799999999999999999988887643

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=93.34  E-value=0.22  Score=39.81  Aligned_cols=62  Identities=18%  Similarity=0.203  Sum_probs=53.4

Q ss_pred             HHHHHHHHHH----HHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeec
Q 045535            4 NVLSDYLWAK----AVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINI   65 (100)
Q Consensus         4 tvlSDylW~~----A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~   65 (100)
                      +.+.=|+|..    ++-.+||+..++.-.+.=.++++..++ .|.+.++..++|++++++|.++.++
T Consensus       282 s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~  348 (350)
T PTZ00343        282 SGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSL  348 (350)
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhh
Confidence            4455566664    666799999999999999999999997 7899999999999999999998876

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=92.54  E-value=0.37  Score=39.51  Aligned_cols=63  Identities=19%  Similarity=0.223  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeeccC
Q 045535            5 VLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIPD   67 (100)
Q Consensus         5 vlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~~   67 (100)
                      +..+|++.+|--.||=..+++=-+.+||..|+--++ .++.+++.-++|.++.++|.+++....
T Consensus        90 v~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD  153 (334)
T PF06027_consen   90 VEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSD  153 (334)
T ss_pred             HHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeec
Confidence            578999999999999999999999999999999998 688999999999999999999888744

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=91.82  E-value=1.2  Score=31.69  Aligned_cols=60  Identities=18%  Similarity=0.159  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHH-----hhhhHHHhhhhhhhhhHHHHHHH-HhCCCCcHHHHHHHHHHHHHhheeeccCC
Q 045535            5 VLSDYLWAKAVL-----LTTATVATAGLTIQVPLAAVVDS-LTGNAPKLLDYLGAVAVIIGFGGINIPDG   68 (100)
Q Consensus         5 vlSDylW~~A~l-----LTSPLvaTlGLSLTIPLAml~D~-l~~~~~s~~y~lGa~lV~~sF~~in~~~~   68 (100)
                      .+|=|+|.+|+-     ..=|+.+.+|...+    .+..+ +.|.+.++.-++|-.++++|.+++|..++
T Consensus        41 ~~sf~~ls~al~~lplsiAYavw~GiG~v~~----~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~  106 (120)
T PRK10452         41 SLSYIFLSFAVKKIALGVAYALWEGIGILFI----TLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTR  106 (120)
T ss_pred             HHHHHHHHHHHhhCCchhHHHHHHHHHHHHH----HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence            345566666653     12233333443333    33444 48999999999999999999999998664

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=91.67  E-value=0.098  Score=43.53  Aligned_cols=70  Identities=26%  Similarity=0.200  Sum_probs=53.7

Q ss_pred             ChhHHHHHHHHHHHHH----hhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeeccCCcc
Q 045535            1 LLDNVLSDYLWAKAVL----LTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIPDGAL   70 (100)
Q Consensus         1 ll~tvlSDylW~~A~l----LTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~~~~~   70 (100)
                      |+.+++.-|+=.+++.    .|+.|++|+=+++-==++.+.-.+ ..+++++.-|+|+++|++|=++......+.
T Consensus       245 Ll~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~~~  319 (330)
T KOG1583|consen  245 LLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWNHP  319 (330)
T ss_pred             HHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            4678889999888887    466777777766666677777776 789999999999999999977765433333

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=91.48  E-value=0.4  Score=36.50  Aligned_cols=61  Identities=15%  Similarity=-0.005  Sum_probs=51.6

Q ss_pred             hhHHHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhhe
Q 045535            2 LDNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGG   62 (100)
Q Consensus         2 l~tvlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~   62 (100)
                      +.+.++-++|.+++=...+-.++.-..++.+++.+..++ .|..+++..++|+++|++|.++
T Consensus       219 ~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       219 LMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            346677888999888888877777778889999999987 7999999999999999999764

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=91.14  E-value=0.5  Score=37.63  Aligned_cols=60  Identities=23%  Similarity=0.404  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHH----HHhCC-----------CCcHHHHHHHHHHHHHhheee
Q 045535            5 VLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVD----SLTGN-----------APKLLDYLGAVAVIIGFGGIN   64 (100)
Q Consensus         5 vlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D----~l~~~-----------~~s~~y~lGa~lV~~sF~~in   64 (100)
                      .++-.+|+-+=+++=|.+-++||.+.+.+--..-    +..||           ...++-++|.+++++|..+.-
T Consensus        59 mlgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~  133 (254)
T PF07857_consen   59 MLGGALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFS  133 (254)
T ss_pred             HhhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHhee
Confidence            5677889998889999999999999999854433    33222           136888999999988876544

The region concerned is approximately 280 residues long.

>PRK13499 rhamnose-proton symporter; Provisional

Probab=91.02  E-value=0.5  Score=39.16  Aligned_cols=69  Identities=19%  Similarity=0.286  Sum_probs=52.3

Q ss_pred             hhHHHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH---------hCC-------CCcHHHHHHHHHHHHHhheeec
Q 045535            2 LDNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL---------TGN-------APKLLDYLGAVAVIIGFGGINI   65 (100)
Q Consensus         2 l~tvlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l---------~~~-------~~s~~y~lGa~lV~~sF~~in~   65 (100)
                      +..++|-.+|..+=++..+-+..+|+|++.|++.=...+         .|.       +-...-++|.+++++|..+..+
T Consensus        74 ~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~  153 (345)
T PRK13499         74 LPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR  153 (345)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            346889999999999999999999999999998755443         121       1123457888888899998887


Q ss_pred             cCCcc
Q 045535           66 PDGAL   70 (100)
Q Consensus        66 ~~~~~   70 (100)
                      ...+.
T Consensus       154 Ag~~k  158 (345)
T PRK13499        154 AGQLK  158 (345)
T ss_pred             hhhhc
Confidence            44433

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=90.13  E-value=2.2  Score=33.02  Aligned_cols=68  Identities=16%  Similarity=0.155  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeeccCCcccc
Q 045535            5 VLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIPDGALSR   72 (100)
Q Consensus         5 vlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~~~~~~~   72 (100)
                      +++=++-..|.-..+.-+-++.=|..+...|+...+ .|+.++..-+++++++.+|.++.++.+....+
T Consensus        75 ~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~  143 (303)
T PF08449_consen   75 FLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS  143 (303)
T ss_pred             HHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccc
Confidence            344445555555556556666677777777788876 79999999999999999999999986554443

; GO: 0055085 transmembrane transport

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=89.15  E-value=2.6  Score=29.42  Aligned_cols=34  Identities=18%  Similarity=0.178  Sum_probs=28.9

Q ss_pred             HHHHHH-hCCCCcHHHHHHHHHHHHHhheeeccCC
Q 045535           35 AVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIPDG   68 (100)
Q Consensus        35 ml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~~~   68 (100)
                      .+.+++ .|++.++.-++|..++++|.+++|..++
T Consensus        72 ~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~~  106 (110)
T PRK09541         72 SLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLSR  106 (110)
T ss_pred             HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            455555 7999999999999999999999998553

>TIGR00803 nst UDP-galactose transporter

Probab=87.60  E-value=0.95  Score=33.28  Aligned_cols=47  Identities=17%  Similarity=0.123  Sum_probs=41.5

Q ss_pred             HHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhh
Q 045535           15 VLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFG   61 (100)
Q Consensus        15 ~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~   61 (100)
                      +-..+|.+.++..++.+-++.+..++ .|++++...++|+.+|+.|-.
T Consensus       173 lk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~  220 (222)
T TIGR00803       173 VRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATF  220 (222)
T ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeE
Confidence            34788999999999999999999987 799999999999999998754

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=86.86  E-value=3.8  Score=29.94  Aligned_cols=64  Identities=19%  Similarity=0.043  Sum_probs=52.6

Q ss_pred             hHHHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeecc
Q 045535            3 DNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIP   66 (100)
Q Consensus         3 ~tvlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~   66 (100)
                      +..+..+++.+|.-.+++-.+++-.+++--+.++...+ .|++.++..++|.++.++|.+++...
T Consensus        56 ~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~  120 (260)
T TIGR00950        56 QIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSD  120 (260)
T ss_pred             HHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccC
Confidence            45678889999999999988888877766666777776 67889999999999999998887653

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=86.58  E-value=3.1  Score=31.84  Aligned_cols=57  Identities=7%  Similarity=0.046  Sum_probs=50.2

Q ss_pred             HHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheee
Q 045535            8 DYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGIN   64 (100)
Q Consensus         8 DylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in   64 (100)
                      =.++.++.-.||+-.+++-.+++.++.++...+ .++.++...++|.++.++|.++..
T Consensus        79 ~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~  136 (302)
T TIGR00817        79 HVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS  136 (302)
T ss_pred             HHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence            357888999999999999999999999999987 688889889999999999997654

specificities overlap.

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=84.89  E-value=5.5  Score=27.33  Aligned_cols=61  Identities=13%  Similarity=0.093  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeec
Q 045535            5 VLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINI   65 (100)
Q Consensus         5 vlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~   65 (100)
                      .+|=++|.+++-.-..=++-.=.++.+-.+.+.-++ .|.+.++.-++|.++++.|.+++..
T Consensus        48 ~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~  109 (111)
T PRK15051         48 GLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS  109 (111)
T ss_pred             HHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            456667777665332222222223333445555555 7999999999999999999988764

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=80.80  E-value=14  Score=26.56  Aligned_cols=69  Identities=26%  Similarity=0.237  Sum_probs=54.4

Q ss_pred             hhHHHHHHHHHHHHHhhhhHHHhhhhhhhhhHHHHHHH-H-hCCCCcHHHHHHHHHHHHHhheeeccCCcc
Q 045535            2 LDNVLSDYLWAKAVLLTTATVATAGLTIQVPLAAVVDS-L-TGNAPKLLDYLGAVAVIIGFGGINIPDGAL   70 (100)
Q Consensus         2 l~tvlSDylW~~A~lLTSPLvaTlGLSLTIPLAml~D~-l-~~~~~s~~y~lGa~lV~~sF~~in~~~~~~   70 (100)
                      ++.....++|..+.-.++.-.+++-.+..--+..+.-. + .++..++..++|.+..+.|.+++.......
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~  148 (292)
T COG0697          78 LGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGG  148 (292)
T ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcc
Confidence            34567788899998888888888777777667777774 5 488999999999999999999998865543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	100
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	97.03
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	93.89

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=97.03  E-value=0.00045  Score=48.75  Aligned_cols=67  Identities=18%  Similarity=0.141  Sum_probs=39.7

Q ss_pred             hhHHHHHHHHHHHHHhhhhHHHhhh-hhhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeeccCC
Q 045535            2 LDNVLSDYLWAKAVLLTTATVATAG-LTIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIPDG   68 (100)
Q Consensus         2 l~tvlSDylW~~A~lLTSPLvaTlG-LSLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~~~   68 (100)
                      +++.+|=|+|.+|+=...+-++..= ..+..-++.+.-++ .|.+.++.-++|.++|++|.+++|..++
T Consensus        38 ~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~~  106 (137)
T 2i68_A           38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSR  106 (137)
T ss_dssp             HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            4577888899988654333323222 24555556666766 7999999999999999999999998553

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=93.89  E-value=0.22  Score=32.98  Aligned_cols=64  Identities=17%  Similarity=0.135  Sum_probs=46.0

Q ss_pred             hHHHHHHHHHHHHHhhhhHHHhhhh--hhhhhHHHHHHHH-hCCCCcHHHHHHHHHHHHHhheeeccC
Q 045535            3 DNVLSDYLWAKAVLLTTATVATAGL--TIQVPLAAVVDSL-TGNAPKLLDYLGAVAVIIGFGGINIPD   67 (100)
Q Consensus         3 ~tvlSDylW~~A~lLTSPLvaTlGL--SLTIPLAml~D~l-~~~~~s~~y~lGa~lV~~sF~~in~~~   67 (100)
                      +..+|=++|.+|+ ..-|+-..-.+  ++..-++.+.-++ .|.+.++.-++|.++++.|.+++|..+
T Consensus        39 ~~~~~~~~~~~al-~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           39 CYCASFWLLAQTL-AYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHH-HhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            4567778888854 45555544444  3344445556665 799999999999999999999999853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00