Citrus Sinensis ID: 045551

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-
Protein Sequence
VAKSMESIISETVATPNDPRRKELEKMEMQKAIIDQKAKAQVRGELYFGLGFLMVQTLGFMRLTFWELSWDVMEPICFFVSSLDFALAYGFFLRTSTEPTFEGYFHRRFKSRQNKLMRAHNFDEEKYNHLRKLFYPAPEGCYGHALPSLHHFKASWGNVSG
Secondary Structure (PSIPRED)
cHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccEEEcccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccHcccccccccccccccccccccc
Coil and Loop (DISEMBL)
VAKSMESIISEtvatpndprrKELEKMEMQKAIIDQKAKAQVRGELYFGLGFLMVQTLGFMRLTFWELSWDVMEPICFFVSSLDFALAYGFflrtsteptfegyfHRRFKSRQNKLMrahnfdeekYNHLrklfypapegcyghalpslhhfkaswgnvsg
Flexible Loop (DISEMBL)
vaksmesiisetvatpndprrkeLEKMEMQKAIIDQKAKAQVRGELYFGLGFLMVQTLGFMRLTFWELSWDVMEPICFFVSSLDFALAYGFFLRTSTEPTFEGYFHRRFKSRQNKLMRAHNFDEEKYNHLRKLFYPAPEGCYGHALPSLHHFKASWGNVSG
Low Complexity Region (SEG)
VAKSMESIISETVATPNDPRRKELEKMEMQKAIIDQKAKAQVRGELYFGLGFLMVQTLGFMRLTFWELSWDVMEPICFFVSSLDFALAYGFFLRTSTEPTFEGYFHRRFKSRQNKLMRAHNFDEEKYNHLRKLFYPAPEGCYGHALPSLHHFKASWGNVSG
Disordered region (IsUnstruct)
************************************KAKAQVRGELYFGLGFLMVQTLGFMRLTFWELSWDVMEPICFFVSSLDFALAYGFFLRTSTEPTFEGYFHRRFKSRQNKLMRAHNFDEEKYNHLRKLFYPAPEGCYGHALPSLHHFKASW*****
Disordered Region (DISOPRED)
VAKS***I********************MQKAIIDQKAKAQVRGELYFGLGFLMVQTLGFMRLTFWELSWDVMEPICFFVSSLDFALAYGFFLRTSTEPTFEGYFHRRFKSRQNKLMRAHNFDEEKYNHLRKLFY**************************
Disordered Region (DISEMBL)
VAKSMESIISETVATPNDPRRKELEKMEMQKAIIDQKAKAQVRGELYFGLGFLMVQTLGFMRLTFWELSWDVMEPICFFVSSLDFALAYGFFLRTSTEPTFEGYFHRRFKSRQNKLMRAHNFDEEKYNHLRKLFYPAPEGCYGHALPSLHHFKASWGNVSG
Disordered Region (DISPRO)
VAKSMESIISETVATPNDPRRKELEKMEMQKAIIDQKAKAQVRGELYFGLGFLMVQTLGFMRLTFWELSWDVMEPICFFVSSLDFALAYGFFLRTSTEPTFEGYFHRRFKSRQNKLMRAHNFDEEKYNHLRKLFYPAP***********************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VAKSMESIISETVATPNDPRRKELEKMEMQKAIIDQKAKAQVRGELYFGLGFLMVQTLGFMRLTFWELSWDVMEPICFFVSSLDFALAYGFFLRTSTEPTFEGYFHRRFKSRQNKLMRAHNFDEEKYNHLRKLFYPAPEGCYGHALPSLHHFKASWGNVSG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	161	2.2.26 [Sep-21-2011]
Q3UMR5	350	Calcium uniporter protein	yes	no	0.689	0.317	0.306	7e-10
Q8NE86	351	Calcium uniporter protein	yes	no	0.689	0.316	0.306	1e-09
Q08BI9	376	Calcium uniporter protein	yes	no	0.714	0.305	0.286	9e-09
Q9NWR8	336	Coiled-coil domain-contai	no	no	0.763	0.366	0.292	4e-08
Q810S1	345	Coiled-coil domain-contai	no	no	0.763	0.356	0.325	7e-08

>sp|Q3UMR5|MCU_MOUSE Calcium uniporter protein, mitochondrial OS=Mus musculus GN=Mcu PE=2 SV=2

 Score = 63.2 bits (152), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 59/111 (53%)

Query: 21  RKELEKMEMQKAIIDQKAKAQVRGELYFGLGFLMVQTLGFMRLTFWELSWDVMEPICFFV 80
           +++L  +E  +  I +KA+ +    L+ GL ++  Q     RLT+WE SWD+MEP+ +F+
Sbjct: 210 KQQLAPLEKVRIEISRKAEKRTTLVLWGGLAYMATQFGILARLTWWEYSWDIMEPVTYFI 269

Query: 81  SSLDFALAYGFFLRTSTEPTFEGYFHRRFKSRQNKLMRAHNFDEEKYNHLR 131
           +       Y +F+ T  E  +     R++    +K  +   FD EKYN L+
Sbjct: 270 TYGSAMAMYAYFVMTRQEYVYPEARDRQYLLFFHKGAKKSRFDLEKYNQLK 320

Mitochondrial inner membrane calcium transporter that mediates calcium uptake into mitochondrion.
Mus musculus (taxid: 10090)

>sp|Q8NE86|MCU_HUMAN Calcium uniporter protein, mitochondrial OS=Homo sapiens GN=MCU PE=1 SV=1

 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 59/111 (53%)

Query: 21  RKELEKMEMQKAIIDQKAKAQVRGELYFGLGFLMVQTLGFMRLTFWELSWDVMEPICFFV 80
           +++L  +E  +  I +KA+ +    L+ GL ++  Q     RLT+WE SWD+MEP+ +F+
Sbjct: 211 KEQLAPLEKVRIEISRKAEKRTTLVLWGGLAYMATQFGILARLTWWEYSWDIMEPVTYFI 270

Query: 81  SSLDFALAYGFFLRTSTEPTFEGYFHRRFKSRQNKLMRAHNFDEEKYNHLR 131
           +       Y +F+ T  E  +     R++    +K  +   FD EKYN L+
Sbjct: 271 TYGSAMAMYAYFVMTRQEYVYPEARDRQYLLFFHKGAKKSRFDLEKYNQLK 321

Mitochondrial inner membrane calcium transporter that mediates calcium uptake into mitochondrion.

Homo sapiens (taxid: 9606)

>sp|Q08BI9|MCU_DANRE Calcium uniporter protein, mitochondrial OS=Danio rerio GN=mcu PE=2 SV=1

 Score = 59.3 bits (142), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 59/115 (51%)

Query: 23  ELEKMEMQKAIIDQKAKAQVRGELYFGLGFLMVQTLGFMRLTFWELSWDVMEPICFFVSS 82
           +L+ +E  K  + +KA+ +    L+ G+ ++  Q     RLT+WE SWD+MEP+ +F++ 
Sbjct: 237 QLQPLEKVKEELSKKAERRTTWVLWGGMAYMATQFGILARLTWWEYSWDIMEPVTYFITY 296

Query: 83  LDFALAYGFFLRTSTEPTFEGYFHRRFKSRQNKLMRAHNFDEEKYNHLRKLFYPA 137
                 Y +F+ T  E  +     R++    ++  +   FD EKYN L+     A
Sbjct: 297 GTAMAMYAYFVLTRQEYLYPDARDRQYLLFFHRGAKRTRFDIEKYNKLKDAIAEA 351

Mitochondrial inner membrane calcium transporter that mediates calcium uptake into mitochondrion.

Danio rerio (taxid: 7955)

>sp|Q9NWR8|C109B_HUMAN Coiled-coil domain-containing protein 109B OS=Homo sapiens GN=CCDC109B PE=2 SV=2

 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 68/123 (55%)

Query: 18  DPRRKELEKMEMQKAIIDQKAKAQVRGELYFGLGFLMVQTLGFMRLTFWELSWDVMEPIC 77
           D  +++L+ +E  KA I+  ++A+  G L+ GL  L +Q      LT+W  SWD+MEP+ 
Sbjct: 193 DHLKEQLQPLEQVKAGIEAHSEAKTSGLLWAGLALLSIQGGALAWLTWWVYSWDIMEPVT 252

Query: 78  FFVSSLDFALAYGFFLRTSTEPTFEGYFHRRFKSRQNKLMRAHNFDEEKYNHLRKLFYPA 137
           +F++  +  + + +F+ T  + T+     R+F    +K  +  +FD ++YN L++    A
Sbjct: 253 YFITFANSMVFFAYFIVTRQDYTYSAVKSRQFLQFFHKKSKQQHFDVQQYNKLKEDLAKA 312

Query: 138 PEG 140
            E 
Sbjct: 313 KES 315

Homo sapiens (taxid: 9606)

>sp|Q810S1|C109B_MOUSE Coiled-coil domain-containing protein 109B OS=Mus musculus GN=Ccdc109b PE=2 SV=1

 Score = 56.6 bits (135), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 65/123 (52%)

Query: 18  DPRRKELEKMEMQKAIIDQKAKAQVRGELYFGLGFLMVQTLGFMRLTFWELSWDVMEPIC 77
           D  +++L  +E  KA I+ +++A   G L+ GL  L VQ      LT+W  SWD+MEP+ 
Sbjct: 202 DHLQEQLRPLEQVKAAIEARSEANTSGLLWAGLALLSVQGGALAWLTWWVYSWDIMEPVT 261

Query: 78  FFVSSLDFALAYGFFLRTSTEPTFEGYFHRRFKSRQNKLMRAHNFDEEKYNHLRKLFYPA 137
           FF+S  +  + + +F+ T    T+     R+F    +K  +   FD E+YN L++    A
Sbjct: 262 FFLSFANSIVFFAYFIITRQNYTYSSLRSRQFLQFFHKKSQRRCFDVEQYNKLKEDLAEA 321

Query: 138 PEG 140
            E 
Sbjct: 322 TES 324

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
255538554	354	conserved hypothetical protein [Ricinus	0.950	0.432	0.700	3e-59
224067353	269	predicted protein [Populus trichocarpa]	0.844	0.505	0.75	6e-57
147799316	356	hypothetical protein VITISV_032988 [Viti	0.925	0.418	0.683	6e-57
225458380	356	PREDICTED: uncharacterized protein LOC10	0.925	0.418	0.683	7e-57
224136582	355	predicted protein [Populus trichocarpa]	0.925	0.419	0.686	2e-56
359477905	232	PREDICTED: LOW QUALITY PROTEIN: calcium	0.838	0.581	0.75	2e-55
356562329	356	PREDICTED: uncharacterized protein LOC10	0.838	0.379	0.740	7e-54
356553893	241	PREDICTED: uncharacterized protein LOC10	0.869	0.580	0.707	4e-53
449477014	341	PREDICTED: uncharacterized protein LOC10	0.844	0.398	0.713	6e-53
449460163	343	PREDICTED: uncharacterized protein LOC10	0.844	0.396	0.713	6e-53

>gi|255538554|ref|XP_002510342.1| conserved hypothetical protein [Ricinus communis] gi|223551043|gb|EEF52529.1| conserved hypothetical protein [Ricinus communis]

 Score =  232 bits (592), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 110/157 (70%), Positives = 126/157 (80%), Gaps = 4/157 (2%)

Query: 1   VAKSMESIISETVATPNDPRRKELEKMEMQKAIIDQKAKAQVRGELYFGLGFLMVQTLGF 60
           VAKSME+IIS+++A PNDP+RK LE ME+QKAIIDQKA+AQV+GELY GLGF++ QTLGF
Sbjct: 193 VAKSMENIISQSIAIPNDPKRKHLEHMELQKAIIDQKARAQVKGELYCGLGFMVAQTLGF 252

Query: 61  MRLTFWELSWDVMEPICFFVSSLDFALAYGFFLRTSTEPTFEGYFHRRFKSRQNKLMRAH 120
           MRLTFWELSWDVMEPICFFV+SL FALAY FFLRTS EP+FEGYF RRFK++Q KLM+ H
Sbjct: 253 MRLTFWELSWDVMEPICFFVTSLHFALAYVFFLRTSVEPSFEGYFQRRFKAKQRKLMKIH 312

Query: 121 NFDEEKYNHLRKLFYPAPEGCYGHALPSLHHFKASWG 157
           NFD E YN LRK FYP          P   H+K   G
Sbjct: 313 NFDIENYNKLRKAFYPN----INDGFPRAEHYKPFGG 345

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067353|ref|XP_002302472.1| predicted protein [Populus trichocarpa] gi|222844198|gb|EEE81745.1| predicted protein [Populus trichocarpa]

 Score =  224 bits (572), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 102/136 (75%), Positives = 120/136 (88%)

Query: 1   VAKSMESIISETVATPNDPRRKELEKMEMQKAIIDQKAKAQVRGELYFGLGFLMVQTLGF 60
           VA S+E++IS+T+A P+DPRRK LE ME  K IIDQKA+ QVRGELY GLGFLM+QTLGF
Sbjct: 134 VAISVENMISQTIAAPDDPRRKHLEHMEKLKVIIDQKARTQVRGELYCGLGFLMIQTLGF 193

Query: 61  MRLTFWELSWDVMEPICFFVSSLDFALAYGFFLRTSTEPTFEGYFHRRFKSRQNKLMRAH 120
           MRLTFWEL+WDVMEPICFFV+SL FA+AYGFFLRTSTEP+FEGYF +RFK++Q KLM+ H
Sbjct: 194 MRLTFWELNWDVMEPICFFVTSLHFAIAYGFFLRTSTEPSFEGYFQQRFKAKQKKLMKIH 253

Query: 121 NFDEEKYNHLRKLFYP 136
            FD +KYN LRK+FYP
Sbjct: 254 GFDVQKYNQLRKVFYP 269

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147799316|emb|CAN61497.1| hypothetical protein VITISV_032988 [Vitis vinifera]

 Score =  224 bits (572), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 106/155 (68%), Positives = 128/155 (82%), Gaps = 6/155 (3%)

Query: 1   VAKSMESIISETVATPNDPRRKELEKMEMQKAIIDQKAKAQVRGELYFGLGFLMVQTLGF 60
           VAKSME++IS+++ATPNDPRR+ELE+ME QK++IDQKAK  V+GELY GLGFL++QTLGF
Sbjct: 195 VAKSMETLISQSIATPNDPRREELEQMEKQKSVIDQKAKTLVQGELYCGLGFLVLQTLGF 254

Query: 61  MRLTFWELSWDVMEPICFFVSSLDFALAYGFFLRTSTEPTFEGYFHRRFKSRQNKLMRAH 120
           MRLTFWELSWDVMEPICFFV+SL FA AY FFLRTS EP+FEGYF RRFK++Q +LM+ H
Sbjct: 255 MRLTFWELSWDVMEPICFFVTSLHFAGAYAFFLRTSKEPSFEGYFQRRFKAKQKQLMKTH 314

Query: 121 NFDEEKYNHLRKLFYPAPEGCYGHALPSLHHFKAS 155
           NFD EKYN+L + FYP       +  P+  HF  S
Sbjct: 315 NFDLEKYNNLCRAFYP------NYYSPNSDHFPPS 343

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458380|ref|XP_002281805.1| PREDICTED: uncharacterized protein LOC100262482 [Vitis vinifera] gi|302142441|emb|CBI19644.3| unnamed protein product [Vitis vinifera]

 Score =  224 bits (572), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 106/155 (68%), Positives = 128/155 (82%), Gaps = 6/155 (3%)

Query: 1   VAKSMESIISETVATPNDPRRKELEKMEMQKAIIDQKAKAQVRGELYFGLGFLMVQTLGF 60
           VAKSME++IS+++ATPNDPRR+ELE+ME QK++IDQKAK  V+GELY GLGFL++QTLGF
Sbjct: 195 VAKSMETLISQSIATPNDPRREELEQMEKQKSVIDQKAKTLVQGELYCGLGFLVLQTLGF 254

Query: 61  MRLTFWELSWDVMEPICFFVSSLDFALAYGFFLRTSTEPTFEGYFHRRFKSRQNKLMRAH 120
           MRLTFWELSWDVMEPICFFV+SL FA AY FFLRTS EP+FEGYF RRFK++Q +LM+ H
Sbjct: 255 MRLTFWELSWDVMEPICFFVTSLHFAGAYAFFLRTSKEPSFEGYFQRRFKAKQKQLMKTH 314

Query: 121 NFDEEKYNHLRKLFYPAPEGCYGHALPSLHHFKAS 155
           NFD EKYN+L + FYP       +  P+  HF  S
Sbjct: 315 NFDLEKYNNLCRAFYP------NYYSPNSDHFPPS 343

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136582|ref|XP_002326896.1| predicted protein [Populus trichocarpa] gi|222835211|gb|EEE73646.1| predicted protein [Populus trichocarpa]

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 105/153 (68%), Positives = 125/153 (81%), Gaps = 4/153 (2%)

Query: 1   VAKSMESIISETVATPNDPRRKELEKMEMQKAIIDQKAKAQVRGELYFGLGFLMVQTLGF 60
           VAKSME +IS+T+AT NDPRR +LE ME   AIID+KA+ QV+GELY GLGF+M+QTLGF
Sbjct: 196 VAKSMEHMISQTMATLNDPRRTQLEHMEKLMAIIDKKARTQVQGELYCGLGFIMIQTLGF 255

Query: 61  MRLTFWELSWDVMEPICFFVSSLDFALAYGFFLRTSTEPTFEGYFHRRFKSRQNKLMRAH 120
           MRLTFWEL+WDVMEPICFFV+SL F LAYGFFLRTSTEP+FEGYF RRFK++Q KLM  H
Sbjct: 256 MRLTFWELNWDVMEPICFFVTSLHFVLAYGFFLRTSTEPSFEGYFQRRFKTKQKKLMVLH 315

Query: 121 NFDEEKYNHLRKLFYPAPEGCYGHALPSLHHFK 153
            FD +KYN LR++FYP      G+ LP   ++K
Sbjct: 316 GFDVQKYNQLRRVFYPN----LGYGLPQSEYYK 344

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477905|ref|XP_003632041.1| PREDICTED: LOW QUALITY PROTEIN: calcium uniporter protein, mitochondrial-like [Vitis vinifera]

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 102/136 (75%), Positives = 121/136 (88%), Gaps = 1/136 (0%)

Query: 1   VAKSMESIISETVATPNDPRRKELEKMEMQKAIIDQKAKAQVRGELYFGLGFLMVQTLGF 60
           VAKSME++IS+++ATPNDPRR ELE+ME QK++IDQKAK  V+GELY GLGFL++QTLGF
Sbjct: 85  VAKSMETLISQSIATPNDPRR-ELEQMEKQKSVIDQKAKTLVQGELYCGLGFLVLQTLGF 143

Query: 61  MRLTFWELSWDVMEPICFFVSSLDFALAYGFFLRTSTEPTFEGYFHRRFKSRQNKLMRAH 120
           MRLTFWELSWDVMEPICFFV+SL FA AY FFLRTS EP+FEGYF RRFK++Q +LM+ H
Sbjct: 144 MRLTFWELSWDVMEPICFFVTSLHFAGAYAFFLRTSKEPSFEGYFQRRFKAKQKQLMKTH 203

Query: 121 NFDEEKYNHLRKLFYP 136
           NFD EKYN+L + FYP
Sbjct: 204 NFDLEKYNNLCRAFYP 219

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562329|ref|XP_003549424.1| PREDICTED: uncharacterized protein LOC100808882 [Glycine max]

 Score =  214 bits (546), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 100/135 (74%), Positives = 116/135 (85%)

Query: 1   VAKSMESIISETVATPNDPRRKELEKMEMQKAIIDQKAKAQVRGELYFGLGFLMVQTLGF 60
           VAKS+ES+I +++A PNDPRRKELE ME QK +ID+KAKAQVR ELYFGLGFL VQTLGF
Sbjct: 191 VAKSIESLIYQSIANPNDPRRKELELMEKQKWMIDEKAKAQVRAELYFGLGFLTVQTLGF 250

Query: 61  MRLTFWELSWDVMEPICFFVSSLDFALAYGFFLRTSTEPTFEGYFHRRFKSRQNKLMRAH 120
           MRLTFWELSWDVMEPICFFV+S  FALAY FFL+TSTEPTF+G+FH RFK++Q +LM+ H
Sbjct: 251 MRLTFWELSWDVMEPICFFVTSFGFALAYLFFLKTSTEPTFQGFFHHRFKAKQERLMKTH 310

Query: 121 NFDEEKYNHLRKLFY 135
           NFD  +YN L K  Y
Sbjct: 311 NFDMSRYNELFKACY 325

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553893|ref|XP_003545285.1| PREDICTED: uncharacterized protein LOC100807242 [Glycine max]

 Score =  212 bits (540), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 99/140 (70%), Positives = 117/140 (83%)

Query: 1   VAKSMESIISETVATPNDPRRKELEKMEMQKAIIDQKAKAQVRGELYFGLGFLMVQTLGF 60
           VAKS+ES+I +++A PNDPRR+ELE ME QK +ID+KAKAQVR ELYFGLGFL VQTLGF
Sbjct: 76  VAKSIESLIYQSIANPNDPRRRELEHMEKQKWMIDEKAKAQVRAELYFGLGFLTVQTLGF 135

Query: 61  MRLTFWELSWDVMEPICFFVSSLDFALAYGFFLRTSTEPTFEGYFHRRFKSRQNKLMRAH 120
           MRLTFWELSWDVMEPICFFV+S  FALAY FFL+TSTEPTF+G+FH RF+++Q +LM+ H
Sbjct: 136 MRLTFWELSWDVMEPICFFVTSFGFALAYLFFLKTSTEPTFQGFFHHRFRAKQERLMKTH 195

Query: 121 NFDEEKYNHLRKLFYPAPEG 140
           NFD  +YN L K   P   G
Sbjct: 196 NFDMSRYNELFKACCPNYHG 215

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449477014|ref|XP_004154903.1| PREDICTED: uncharacterized protein LOC101230560 [Cucumis sativus]

 Score =  211 bits (538), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 97/136 (71%), Positives = 115/136 (84%)

Query: 1   VAKSMESIISETVATPNDPRRKELEKMEMQKAIIDQKAKAQVRGELYFGLGFLMVQTLGF 60
           VA+SME +IS ++ATPNDPR K+L++ME QKAIID+KAKAQV+ EL  GLG ++ QTLGF
Sbjct: 185 VARSMERMISGSIATPNDPRLKQLQEMEKQKAIIDKKAKAQVQAELICGLGLILGQTLGF 244

Query: 61  MRLTFWELSWDVMEPICFFVSSLDFALAYGFFLRTSTEPTFEGYFHRRFKSRQNKLMRAH 120
           MRLTFWELSWDVMEPICFFV+SL FAL Y FFL+TSTEPTFEG+F RRFK++Q KLM +H
Sbjct: 245 MRLTFWELSWDVMEPICFFVTSLHFALGYAFFLKTSTEPTFEGFFRRRFKAKQTKLMASH 304

Query: 121 NFDEEKYNHLRKLFYP 136
           NFD   YN LR + YP
Sbjct: 305 NFDINNYNELRTICYP 320

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460163|ref|XP_004147815.1| PREDICTED: uncharacterized protein LOC101211280 [Cucumis sativus]

 Score =  211 bits (538), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 97/136 (71%), Positives = 115/136 (84%)

Query: 1   VAKSMESIISETVATPNDPRRKELEKMEMQKAIIDQKAKAQVRGELYFGLGFLMVQTLGF 60
           VA+SME +IS ++ATPNDPR K+L++ME QKAIID+KAKAQV+ EL  GLG ++ QTLGF
Sbjct: 187 VARSMERMISGSIATPNDPRLKQLQEMEKQKAIIDKKAKAQVQAELICGLGLILGQTLGF 246

Query: 61  MRLTFWELSWDVMEPICFFVSSLDFALAYGFFLRTSTEPTFEGYFHRRFKSRQNKLMRAH 120
           MRLTFWELSWDVMEPICFFV+SL FAL Y FFL+TSTEPTFEG+F RRFK++Q KLM +H
Sbjct: 247 MRLTFWELSWDVMEPICFFVTSLHFALGYAFFLKTSTEPTFEGFFRRRFKAKQTKLMASH 306

Query: 121 NFDEEKYNHLRKLFYP 136
           NFD   YN LR + YP
Sbjct: 307 NFDINNYNELRTICYP 322

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
TAIR|locus:2163842	293	AT5G42610 "AT5G42610" [Arabido	0.881	0.484	0.597	4e-42
TAIR|locus:2115205	338	AT4G36820 [Arabidopsis thalian	0.937	0.446	0.526	3.6e-41
TAIR|locus:2049013	336	AT2G23790 "AT2G23790" [Arabido	0.857	0.410	0.568	4.2e-40
TAIR|locus:2173629	321	AT5G66650 "AT5G66650" [Arabido	0.844	0.423	0.463	6.9e-31
TAIR|locus:2206510	293	AT1G57610 "AT1G57610" [Arabido	0.807	0.443	0.432	1.2e-24
TAIR|locus:505006112	292	AT1G09575 "AT1G09575" [Arabido	0.813	0.448	0.432	3.3e-24
DICTYBASE|DDB_G0286429	275	DDB_G0286429 [Dictyostelium di	0.683	0.4	0.372	1.9e-19
MGI|MGI:1914065	345	Ccdc109b "coiled-coil domain c	0.757	0.353	0.327	2.4e-13
UNIPROTKB|Q9NWR8	336	CCDC109B "Coiled-coil domain-c	0.757	0.363	0.295	4.8e-13
RGD|1589771	350	Mcu "mitochondrial calcium uni	0.683	0.314	0.321	3.3e-11

TAIR|locus:2163842 AT5G42610 "AT5G42610" [Arabidopsis thaliana (taxid:3702)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 86/144 (59%), Positives = 106/144 (73%)

Query:     1 VAKSMESIISETVATPNDPRRKELEKMEMQKAIIDQKAKAQVRGELYFGLGFLMVQTLGF 60
             +AKSME++I +T   PNDPR++EL ++   K  ID +A+  V+ ELY GLGFL VQT+GF
Sbjct:   149 IAKSMEAMIKQTSVLPNDPRKEELVQLATTKKSIDIEARRIVQAELYCGLGFLAVQTIGF 208

Query:    61 MRLTFWELSWDVMEPICFFVSSLDFALAYGFFLRTSTEPTFEGYFHRRFKSRQNKLMRAH 120
             MRLTFWELSWDVMEPICFFV+++ F L Y FFLRTSTEP+FEG F +RFK++Q KLM  H
Sbjct:   209 MRLTFWELSWDVMEPICFFVTTIHFILGYIFFLRTSTEPSFEGLFRQRFKTKQKKLMERH 268

Query:   121 NFDEEKYNHLRKLFYPAPEGCYGH 144
              FD  +YN L  LF   P  C  H
Sbjct:   269 GFDFLRYNELNSLFTTFP--CKFH 290

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2115205 AT4G36820 [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 80/152 (52%), Positives = 112/152 (73%)

Query:     1 VAKSMESIIS-ETVATPNDPRRKELEKMEMQKAIIDQKAKAQVRGELYFGLGFLMVQTLG 59
             + KS+E ++    +  PNDPRRKEL ++E  K +IDQKA + VR EL+ GLG+L++QT G
Sbjct:   187 LTKSIEGLLPLSQIHNPNDPRRKELNELEAIKTVIDQKAHSLVRRELWAGLGYLIIQTAG 246

Query:    60 FMRLTFWELSWDVMEPICFFVSSLDFALAYGFFLRTSTEPTFEGYFHRRFKSRQNKLMRA 119
             FMRLTFW+L+WDVMEPICF+VSS+ F   Y FFL+TS EP+F+G++  RF+++Q KLM++
Sbjct:   247 FMRLTFWDLTWDVMEPICFYVSSVYFMAGYTFFLKTSREPSFQGFYQSRFEAKQRKLMQS 306

Query:   120 HNFDEEKYNHLRKLFYPAPEGCYGHALPSLHH 151
              +FD  +Y+ L+KLF P P G     L SL +
Sbjct:   307 EDFDVGRYDELKKLFNPKPSGAVPKILGSLQN 338

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2049013 AT2G23790 "AT2G23790" [Arabidopsis thaliana (taxid:3702)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 79/139 (56%), Positives = 104/139 (74%)

Query:     1 VAKSMESIIS-ETVATPNDPRRKELEKMEMQKAIIDQKAKAQVRGELYFGLGFLMVQTLG 59
             V KS+E ++    +  PNDPRR E +++E +KA+ID KA   VR EL+ GLG+L++QT G
Sbjct:   185 VTKSIEGLLPLPKIHNPNDPRRIEFKELEAEKAVIDVKAHTLVRKELWAGLGYLILQTAG 244

Query:    60 FMRLTFWELSWDVMEPICFFVSSLDFALAYGFFLRTSTEPTFEGYFHRRFKSRQNKLMRA 119
             FMRLTFWELSWDVMEPICF+V+S+ F   Y FFLRTS EP+FEG++  RF+++Q KLM  
Sbjct:   245 FMRLTFWELSWDVMEPICFYVTSVYFMAGYAFFLRTSKEPSFEGFYQSRFEAKQRKLMNE 304

Query:   120 HNFDEEKYNHLRKLFYPAP 138
             + FD E+YN L+KLF   P
Sbjct:   305 YEFDLERYNELKKLFCSKP 323

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2173629 AT5G66650 "AT5G66650" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 63/136 (46%), Positives = 95/136 (69%)

Query:     1 VAKSMESIISETVATPNDPRRKELEKMEMQKAIIDQKAKAQVRGELYFGLGFLMVQTLGF 60
             +  +M  +I     + +   R+E E++E+ K+ ID++A   VR EL+ GLG +M QT+GF
Sbjct:   178 LTSAMAGLIPTLEPSLDAETRQEFEQLEIIKSDIDKRADDLVRKELWAGLGLIMAQTVGF 237

Query:    61 MRLTFWELSWDVMEPICFFVSSLDFALAYGFFLRTSTEPTFEGYFHRRFKSRQNKLMRAH 120
              RLTFWELSWDVMEPICF+V+S  F   Y FFLRTS EP+FEG++  RF+++Q +L++  
Sbjct:   238 FRLTFWELSWDVMEPICFYVTSTYFMAGYAFFLRTSKEPSFEGFYKSRFETKQKRLIKML 297

Query:   121 NFDEEKYNHLRKLFYP 136
             +FD +++  L+K+  P
Sbjct:   298 DFDIDRFTKLQKMHRP 313

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2206510 AT1G57610 "AT1G57610" [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 58/134 (43%), Positives = 82/134 (61%)

Query:    16 PNDPR-RKELEKMEMQKAIIDQKAKAQVRGELYFGLGFLMVQTLGFMRLTFWELSWDVME 74
             P+D   R+E +KM   K  ID  A  QVR  L+ GLG+ +VQ   F+RLTFWE SWDVME
Sbjct:   138 PDDELIREEFDKMRSMKEEIDVLAHQQVRKILWGGLGYSVVQIGIFVRLTFWEFSWDVME 197

Query:    75 PICFFVSSLDFALAYGFFLRTSTEPTFEGYFHRRFKSRQNKLMRAHNFDEEKYNHLR--- 131
             PI FF ++    + Y +FL TS +PT++ +  R F SRQ KL+++H FD E++  L    
Sbjct:   198 PITFFTTATGIIVGYAYFLMTSRDPTYQDFMKRLFLSRQRKLLKSHKFDAERFKELENKW 257

Query:   132 KLFYPAPEGCYGHA 145
             K+   +   C+ +A
Sbjct:   258 KITSCSSSSCHANA 271

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006112 AT1G09575 "AT1G09575" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 58/134 (43%), Positives = 79/134 (58%)

Query:    18 DPRRKELEKMEMQKAIIDQKAKAQVRGELYFGLGFLMVQTLGFMRLTFWELSWDVMEPIC 77
             D  ++E  K+ + K  ID  A  QVR  L+ GL   MVQ   F RLTFWE SWDVMEPI 
Sbjct:   145 DQIKEEFNKLRIMKEEIDVLAHRQVRKILWCGLATSMVQIGLFFRLTFWEFSWDVMEPIT 204

Query:    78 FFVSSLDFALAYGFFLRTSTEPTFEGYFHRRFKSRQNKLMRAHNFDEEKYNHLRKLFYPA 137
             FF ++    + Y +FL TS +PT++ +  R F SRQ KL+++H FD E++  L +LF   
Sbjct:   205 FFATATGIIVGYAYFLMTSRDPTYQDFMKRLFLSRQRKLLKSHKFDCERFKELERLF-KM 263

Query:   138 PEGCYGHALPSLHH 151
                C  HA  S+ +
Sbjct:   264 TSSC--HAAASIRN 275

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

DICTYBASE|DDB_G0286429 DDB_G0286429 [Dictyostelium discoideum (taxid:44689)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 41/110 (37%), Positives = 69/110 (62%)

Query:    21 RKELEKMEMQKAIIDQKAKAQVRGELYFGLGFLMVQTLGFMRLTFWELSWDVMEPICFFV 80
             R++++ +E +K +ID+KA  +    ++ GLG+   Q     RLT+W+LSWD++EP+ +F+
Sbjct:   142 RQKIQPLEEKKQVIDRKAHRRATAIIWTGLGYCFAQAAILARLTWWDLSWDIIEPVSYFL 201

Query:    81 SSLDFALAYGFFLRTSTEPTFEGYFHRRFKSRQNKLMRAHNFDEEKYNHL 130
             +     + Y +F  T TE T+E   HR F  RQ+KL + +NF +E Y +L
Sbjct:   202 TFGSVLIGYTYFTMTKTEFTYEALNHRLFSKRQDKLFKRNNFPKEDYENL 251

GO:0044351 "macropinocytosis" evidence=RCA

MGI|MGI:1914065 Ccdc109b "coiled-coil domain containing 109B" [Mus musculus (taxid:10090)]

 Score = 179 (68.1 bits), Expect = 2.4e-13, P = 2.4e-13
 Identities = 40/122 (32%), Positives = 65/122 (53%)

Query:    18 DPRRKELEKMEMQKAIIDQKAKAQVRGELYFGLGFLMVQTLGFMRLTFWELSWDVMEPIC 77
             D  +++L  +E  KA I+ +++A   G L+ GL  L VQ      LT+W  SWD+MEP+ 
Sbjct:   202 DHLQEQLRPLEQVKAAIEARSEANTSGLLWAGLALLSVQGGALAWLTWWVYSWDIMEPVT 261

Query:    78 FFVSSLDFALAYGFFLRTSTEPTFEGYFHRRFKSRQNKLMRAHNFDEEKYNHLRKLFYPA 137
             FF+S  +  + + +F+ T    T+     R+F    +K  +   FD E+YN L++    A
Sbjct:   262 FFLSFANSIVFFAYFIITRQNYTYSSLRSRQFLQFFHKKSQRRCFDVEQYNKLKEDLAEA 321

Query:   138 PE 139
              E
Sbjct:   322 TE 323

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9NWR8 CCDC109B "Coiled-coil domain-containing protein 109B" [Homo sapiens (taxid:9606)]

 Score = 176 (67.0 bits), Expect = 4.8e-13, P = 4.8e-13
 Identities = 36/122 (29%), Positives = 68/122 (55%)

Query:    18 DPRRKELEKMEMQKAIIDQKAKAQVRGELYFGLGFLMVQTLGFMRLTFWELSWDVMEPIC 77
             D  +++L+ +E  KA I+  ++A+  G L+ GL  L +Q      LT+W  SWD+MEP+ 
Sbjct:   193 DHLKEQLQPLEQVKAGIEAHSEAKTSGLLWAGLALLSIQGGALAWLTWWVYSWDIMEPVT 252

Query:    78 FFVSSLDFALAYGFFLRTSTEPTFEGYFHRRFKSRQNKLMRAHNFDEEKYNHLRKLFYPA 137
             +F++  +  + + +F+ T  + T+     R+F    +K  +  +FD ++YN L++    A
Sbjct:   253 YFITFANSMVFFAYFIVTRQDYTYSAVKSRQFLQFFHKKSKQQHFDVQQYNKLKEDLAKA 312

Query:   138 PE 139
              E
Sbjct:   313 KE 314

GO:0016021 "integral to membrane" evidence=IEA

RGD|1589771 Mcu "mitochondrial calcium uniporter" [Rattus norvegicus (taxid:10116)]

 Score = 160 (61.4 bits), Expect = 3.3e-11, P = 3.3e-11
 Identities = 36/112 (32%), Positives = 61/112 (54%)

Query:    21 RKELEKMEMQKAIIDQKAKAQVRGELYFGLGFLMVQTLGFM-RLTFWELSWDVMEPICFF 79
             R++L  +E  +  I +KA+ +    L+ GL ++  Q  G + RLT+WE SWD+MEP+ +F
Sbjct:   210 RQQLAPLEKVRIEISRKAEKRTTLVLWGGLAYMATQ-FGILARLTWWEYSWDIMEPVTYF 268

Query:    80 VSSLDFALAYGFFLRTSTEPTFEGYFHRRFKSRQNKLMRAHNFDEEKYNHLR 131
             ++       Y +F+ T  E  +     R++    +K  +   FD EKYN L+
Sbjct:   269 ITYGSAMAMYAYFVMTRQEYVYPEARDRQYLLFFHKGAKKSRFDLEKYNQLK 320

GO:0005262 "calcium channel activity" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISO;IDA;IMP

GO:0006851 "mitochondrial calcium ion transport" evidence=ISO;IDA;IMP

GO:0015292 "uniporter activity" evidence=ISO;IDA;IMP

GO:0019722 "calcium-mediated signaling" evidence=ISO

GO:0032024 "positive regulation of insulin secretion" evidence=ISO

GO:0035786 "protein complex oligomerization" evidence=ISO

GO:0042593 "glucose homeostasis" evidence=ISO

GO:0051560 "mitochondrial calcium ion homeostasis" evidence=IMP

GO:0051561 "elevation of mitochondrial calcium ion concentration" evidence=ISO;IDA;IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00014678001 SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (356 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	161
pfam04678	180	pfam04678, DUF607, Protein of unknown function, DU	2e-47

>gnl|CDD|218209 pfam04678, DUF607, Protein of unknown function, DUF607

 Score =  151 bits (383), Expect = 2e-47
 Identities = 48/114 (42%), Positives = 64/114 (56%)

Query: 18  DPRRKELEKMEMQKAIIDQKAKAQVRGELYFGLGFLMVQTLGFMRLTFWELSWDVMEPIC 77
           +   +EL  +E  K  ID+ A  + R  L+ GLG L VQ     RLTFWEL WDVMEP+ 
Sbjct: 67  EALSEELAPLEEIKKEIDRLAHRRARRLLWGGLGLLSVQWGVLARLTFWELGWDVMEPVT 126

Query: 78  FFVSSLDFALAYGFFLRTSTEPTFEGYFHRRFKSRQNKLMRAHNFDEEKYNHLR 131
           +FV+       Y +FL T+ EP++E    R F +RQ KL +   FD E+Y  L 
Sbjct: 127 YFVTLSTAMGGYAYFLYTNREPSYEAADDRLFSARQKKLYKRKGFDLERYEELV 180

This family represents a conserved region found in several uncharacterized eukaryotic proteins. Length = 180

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	161
KOG2966	325	consensus Uncharacterized conserved protein [Gener	100.0
PF04678	180	DUF607: Protein of unknown function, DUF607; Inter	100.0
COG3462	117	Predicted membrane protein [Function unknown]	92.62
PF10183	105	ESSS: ESSS subunit of NADH:ubiquinone oxidoreducta	87.29

>KOG2966 consensus Uncharacterized conserved protein [General function prediction only]

Probab=100.00  E-value=2.2e-53  Score=363.26  Aligned_cols=156  Identities=54%  Similarity=0.925  Sum_probs=149.7

Q ss_pred             Chhhhhhhhccc-CCCCCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhheeeeecccchhhHHHH
Q 045551            1 VAKSMESIISET-VATPNDPRRKELEKMEMQKAIIDQKAKAQVRGELYFGLGFLMVQTLGFMRLTFWELSWDVMEPICFF   79 (161)
Q Consensus         1 ~~~~~~~~~~~~-~~~~~d~~r~eL~~le~~K~~id~~A~~~~~r~~w~gl~~l~~Q~g~l~rLTf~e~SWDVMEPVTYF   79 (161)
                      +++.+...+|.. +-..+|++|+||+||+.+|.+||.+|++++++++|+|||+|++|+|+|+||||||||||||||||||
T Consensus       164 l~~~~~~l~~~~~l~~~~e~~keel~~Le~~K~~Id~~a~~~v~~~LWaGLg~l~vQtg~f~RLTfWE~SWDVMEPItff  243 (325)
T KOG2966|consen  164 LTKSIEGLIPEKKLLLPNEPRKEELAPLEAVKAEIDQKAEALVRKELWAGLGYLAVQTGGFARLTFWEYSWDVMEPITFF  243 (325)
T ss_pred             HHHHHHhhccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhhhhhhhhhhhhccceeee
Confidence            467889999999 6677899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCCCCCCCcccccccccc
Q 045551           80 VSSLDFALAYGFFLRTSTEPTFEGYFHRRFKSRQNKLMRAHNFDEEKYNHLRKLFYPAPEGCYGHALPSLHHFKASW  156 (161)
Q Consensus        80 vt~~~~i~~Y~yfl~t~rd~sy~~~~~~~~~~r~~kl~~~~~FD~~ry~~L~~e~~~~~~~~~~~~~~~~~~~~~~~  156 (161)
                      +|++++|+||+||++|++||||+++++++|..+|+|+.++++||++|||+|++..++.++...+.-+|++-|+|-+.
T Consensus       244 vT~~~~magyayFL~Tsqepsy~~~~~r~f~~kq~Kl~k~~~FDierYneLk~~~~~~~~~~~~~~~~l~~~~~v~~  320 (325)
T KOG2966|consen  244 VTSTYFMAGYAYFLRTSQEPSYEGFYKRRFLTKQRKLMKKQDFDIERYNELKKLFAPAPCSLKRCRDPLFQHLPVSY  320 (325)
T ss_pred             eehHHHHHHHHhheeeccCcccHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhhCccccccccccHHhcCchhh
Confidence            99999999999999999999999999999999999999999999999999999999999988888889999999764

>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109

Probab=100.00  E-value=4.7e-50  Score=321.43  Aligned_cols=131  Identities=41%  Similarity=0.661  Sum_probs=124.7

Q ss_pred             ChhhhhhhhcccCCCCC------------chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhheeeee
Q 045551            1 VAKSMESIISETVATPN------------DPRRKELEKMEMQKAIIDQKAKAQVRGELYFGLGFLMVQTLGFMRLTFWEL   68 (161)
Q Consensus         1 ~~~~~~~~~~~~~~~~~------------d~~r~eL~~le~~K~~id~~A~~~~~r~~w~gl~~l~~Q~g~l~rLTf~e~   68 (161)
                      |+++|.+.+|.......            +++++||+||+++|.+||++|++++++++|+|+++|++|+|+++|||||+|
T Consensus        38 v~~~v~~~~~~~~~~~~~~~~~~~l~~~l~~~~~el~~le~~k~~id~~A~~~~~~~~w~gl~~l~~q~~~l~rLTf~e~  117 (180)
T PF04678_consen   38 VKEAVHRLLPLLNVEEYQNSRERQLRKRLEELRQELAPLEKIKQEIDEKAEKRARRLLWGGLALLVVQFGILARLTFWEY  117 (180)
T ss_pred             HHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            46788888888766554            578999999999999999999999999999999999999999999999999


Q ss_pred             cccchhhHHHHHHhHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 045551           69 SWDVMEPICFFVSSLDFALAYGFFLRTSTEPTFEGYFHRRFKSRQNKLMRAHNFDEEKYNHLR  131 (161)
Q Consensus        69 SWDVMEPVTYFvt~~~~i~~Y~yfl~t~rd~sy~~~~~~~~~~r~~kl~~~~~FD~~ry~~L~  131 (161)
                      |||||||||||+|+|++|++|+||++|+||+||++++++.+.++++|+|+++|||++|||+|+
T Consensus       118 sWDvMEPVTYfv~~~~~i~~y~yfl~t~re~sy~~~~~~~~~~~~~kl~~~~~fD~~~y~~L~  180 (180)
T PF04678_consen  118 SWDVMEPVTYFVGYGTSILGYAYFLYTRREYSYESVFQRRFLRRQHKLYAKHGFDIERYNELK  180 (180)
T ss_pred             ccchhhhHHHHHhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999999999985

>COG3462 Predicted membrane protein [Function unknown]

Probab=92.62  E-value=2  Score=32.80  Aligned_cols=97  Identities=12%  Similarity=0.132  Sum_probs=61.2

Q ss_pred             HHhhHHHHHHHHHHH--HHHHHH----hhhheeeee----------cccchhhHHHHHHhHHHHHHHHHHHHhCCCCC-h
Q 045551           39 KAQVRGELYFGLGFL--MVQTLG----FMRLTFWEL----------SWDVMEPICFFVSSLDFALAYGFFLRTSTEPT-F  101 (161)
Q Consensus        39 ~~~~~r~~w~gl~~l--~~Q~g~----l~rLTf~e~----------SWDVMEPVTYFvt~~~~i~~Y~yfl~t~rd~s-y  101 (161)
                      +|++.+++|...++.  ++-.++    +.-.+||-.          +|=+.=||-.++.....++...|.+-.-++.+ +
T Consensus         2 dk~ven~~w~ligliavi~~v~li~~~~~gg~~y~~gy~gm~GG~yGm~lImpI~~~vvli~lvvfm~~~~g~~r~~~~~   81 (117)
T COG3462           2 DKKVENFAWLLIGLIAVIAVVGLIPSGFHGGAFYPGGYRGMMGGLYGMWLIMPIFWAVVLIFLVVFMFYILGAVRRGSDD   81 (117)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhcccccCcccCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh
Confidence            356778888855444  222222    223455544          44466688888888777776666665433333 4


Q ss_pred             HHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHhC
Q 045551          102 EGYFH-RRFKSRQNKLMRAHNFDEEKYNHLRKLFY  135 (161)
Q Consensus       102 ~~~~~-~~~~~r~~kl~~~~~FD~~ry~~L~~e~~  135 (161)
                      +++-+ .+...-.+..|++-..|-|.|+...++++
T Consensus        82 d~~e~~sRA~eIlkER~AkGEItEEEY~r~~~~ir  116 (117)
T COG3462          82 DDAERGSRAEEILKERYAKGEITEEEYRRIIRTIR  116 (117)
T ss_pred             cccccccHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence            44333 34445556778999999999999998876

>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1

Probab=87.29  E-value=2  Score=31.75  Aligned_cols=46  Identities=20%  Similarity=0.253  Sum_probs=31.9

Q ss_pred             eecccchhhHHHHHHhHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 045551           67 ELSWDVMEPICFFVSSLDFALAYGFFLRTSTEPTFEGYFHRRFKSRQ  113 (161)
Q Consensus        67 e~SWDVMEPVTYFvt~~~~i~~Y~yfl~t~rd~sy~~~~~~~~~~r~  113 (161)
                      ..+|.-||++.||. ++.+++..+.++..+-|.+..++-++....+.
T Consensus        53 ~~d~e~we~~~f~~-~~~~~v~~~~~~~y~PD~~i~~WA~rEA~~rl   98 (105)
T PF10183_consen   53 KRDWEGWELPFFFG-FSGSLVFGGVFLAYKPDTSIQTWARREAYRRL   98 (105)
T ss_pred             cchHhhhHHHHHHH-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            67899999998864 44444444444555789999888777665554

6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	161
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.3 bits (88), Expect = 6e-04
 Identities = 30/172 (17%), Positives = 58/172 (33%), Gaps = 43/172 (25%)

Query: 7   SIISETVATPNDPRR----KELEKMEMQKAI---IDQKAKAQVRGELYFGLG-F-----L 53
           SII+E++   +        K +   ++   I   ++    A+ R +++  L  F     +
Sbjct: 331 SIIAESI--RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR-KMFDRLSVFPPSAHI 387

Query: 54  MVQTLGFMRLTFWE--LSWDVMEPICFFVS-SL------DFALA-YGFFLRTSTEPTFEG 103
               L       W   +  DVM  +      SL      +  ++    +L    +   E 
Sbjct: 388 PTILLS----LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443

Query: 104 YFHRRFKSRQNKLMRAHNFDEEKYNHLRKLFYPAPEGCY-GHALPSLHHFKA 154
             HR      N + +  + D+    +L + FY      + G      HH K 
Sbjct: 444 ALHRSIVDHYN-IPKTFDSDDLIPPYLDQYFY-----SHIG------HHLKN 483

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00