Citrus Sinensis ID: 045554

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320---
Protein Sequence
MAITSILNSNRLLLSKRTVNCFDGNLLRYNVIKSLSFRPVIPDPGPKLSSLQAKTFLMNPTTPILTSSSEANSRTPSNRDLKVQQSVGVMMGGRSFPLIFTNPNQNPNPNRLQVSIGAALFFVLVGLFLFLLSSGQIAGLQQKVLDLSHLLTETTKSLFLGHDTQRWISDYSPVTMSMSMLLAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGKIWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAASKMPIKTQFVMSGTSTSKDE
Secondary Structure (PSIPRED)
ccEEEccccccEEEEccEEEcccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEccccEEEEEEccccccccccEEEEHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccHHHHHcccccccHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccccccccccEEEEEEcccEEEEEEccccHHHHHHHHHHHHcccccEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHccHHHHccccEEcccccHHEHHHEEEcccccccccccccccHHHHHHHcccccccEEccccccccccccccccEEEEEEEEEcccccccEEEccccccccccccEEHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcHHHHcccccccEEccccccHHHHHHHHHcccccEHHHHcccccccEEccccEEEccHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccccccEccccccccccEEEEEEcccEEEEEEccccHHHHHHHHHHHHcccccEEEEEEEcccccccc
Coil and Loop (DISEMBL)
MAITSILNSNRLLLSKRTvncfdgnllrynvikslsfrpvipdpgpklsslqaktflmnpttpiltssseansrtpsnrdlkvqqsvgvmmggrsfpliftnpnqnpnpnrlqVSIGAALFFVLVGLFLFLLSSGQIAGLQQKVLDLSHLLTEttkslflghdtqrwisdyspvtMSMSMllagpkrikfpkqhrgrmtgkasrgnlicfGRYALQALEPAWITARQIEAGRRAMVRNVKRGgkiwvrifpdkpvtarpaetrmgsgkgshaYWAAVVTPGKIIFEMSGVPENIARKAISIAAskmpiktqfvmsgtstskde
Flexible Loop (DISEMBL)
maitsilnsnrlllskRTVNCFDGNLLRYNVIKSLSFRPVIPDPGPKLSSLQAKTFLMNPTTPiltssseansrtpsnrdlKVQQSVGVMMGGRSFPLIFTNPNQNPNPNRLQVSIGAALFFVLVGLFLFLLSSGQIAGLQQKVLDLSHLLTETTkslflghdtqRWISDYSPVTMSMSMLLAGPKrikfpkqhrgrmtgkasrgnlICFGRYALQALEPAWITARQIEAGRRAMVRnvkrggkiwvrifpdkpvtarpaetrmgsgkgshaYWAAVVTPGKIIFEMSGVPENIARKAISIaaskmpiktqfvmsgtstskde
Low Complexity Region (SEG)
MAITSILNSNRLLLSKRTVNCFDGNLLRYNVIKSLSFRPVIPDPGPKLSSLQAKTFLMNPTTPILTSSSEANSRTPSNRDLKVQQSVGVMMGGRSFPLIFTnpnqnpnpnRLQVSIGAAlffvlvglflfllssgQIAGLQQKVLDLSHLLTETTKSLFLGHDTQRWISDYSPVTMSMSMLLAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGKIWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENiarkaisiaaskMPIKTQFVMSGTSTSKDE
Disordered region (IsUnstruct)
*****ILNSNRLLLSKRTVNCFDGNLLRYNVIKSLSFRPVI***********************************************VMMGGRSFPLIFT*********RLQVSIGAALFFVLVGLFLFLLSSGQIAGLQQKVLDLSHLLTETTKSLFLGHDTQRWISDYSPVTMSMSMLLAGPKRI**************SRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGKIWVRIFPDKPV**************SHAYWAAVVTPGKIIFEMSGVPENIARKAISIAAS*******************
Disordered Region (DISOPRED)
**ITS**NSNRLLLSKRTVNCFDGNLLRYNVIKSLSFRPVIPDPGPKLSSLQAKTFLMNPTTP********************QQSVGVMMGGRSFPLIFTNPNQNPNPNRLQVSIGAALFFVLVGLFLFLLSSGQIAGLQQKVLDLSHLLTETTKSLFLGHDTQRWISDYSPVTMSMSMLLAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGKIWVRIFPDKPVTARPAE****SGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAASKMPIKTQF***********
Disordered Region (DISEMBL)
MAITSILNSNRLLLSKRTVNCFDGNLLRYNVIKSLSFRPVIPDPGPKLSSLQAKTFLMNPTTPIL*************RDLKVQQSVGVMMGGRSFPLIFTNPNQNPNPNRLQVSIGAALFFVLVGLFLFLLSSGQIAGLQQKVLDLSHLLTETTKSLFLGHDTQRWISDYSPVTMSMSMLLAGPKRIKFP*********KASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGKIWVRIFPDKPVTA************SHAYWAAVVTPGKIIFEMSGVPENIARKAISIAASKMPIKTQF***********
Disordered Region (DISPRO)
*AITSILNSNRLLLSKRTVNCFDGNLLRYNVIKSLSFRPVIPDPGPKLSSLQAKTFLMNPTTPILTS***********RDLKVQQSVGVMMGGRSFPLIFTNPNQNPNPNRLQVSIGAALFFVLVGLFLFLLSSGQIAGLQQKVLDLSHLLTETTKSLFLGHDTQRWISDYSPVTMSMSMLLAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGKIWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAASKMPIKTQFVMSGT******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAITSILNSNRLLLSKRTVNCFDGNLLRYNVIKSLSFRPVIPDPGPKLSSLQAKTFLMNPTTPILTSSSEANSRTPSNRDLKVQQSVGVMMGGRSFPLIFTNPNQNPNPNRLQVSIGAALFFVLVGLFLFLLSSGQIAGLQQKVLDLSHLLTETTKSLFLGHDTQRWISDYSPVTMSMSMLLAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGKIWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAASKMPIKTQFVMSGTSTSKDE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	323	2.2.26 [Sep-21-2011]
A4QJW8	135	50S ribosomal protein L16	N/A	no	0.405	0.970	0.832	2e-60
A4QLX0	135	50S ribosomal protein L16	N/A	no	0.405	0.970	0.832	2e-60
A4QLN1	135	50S ribosomal protein L16	N/A	no	0.405	0.970	0.832	2e-60
A4QL56	135	50S ribosomal protein L16	N/A	no	0.405	0.970	0.832	2e-60
A4QKW8	135	50S ribosomal protein L16	N/A	no	0.405	0.970	0.832	2e-60
A4QKM9	135	50S ribosomal protein L16	N/A	no	0.405	0.970	0.832	2e-60
A4QKE2	135	50S ribosomal protein L16	N/A	no	0.405	0.970	0.832	2e-60
P56793	135	50S ribosomal protein L16	yes	no	0.405	0.970	0.832	2e-60
A4QK55	135	50S ribosomal protein L16	N/A	no	0.405	0.970	0.832	2e-60
Q09ME0	136	50S ribosomal protein L16	no	no	0.421	1.0	0.801	3e-60

>sp|A4QJW8|RK16_OLIPU 50S ribosomal protein L16, chloroplastic OS=Olimarabidopsis pumila GN=rpl16 PE=3 SV=1

 Score =  232 bits (592), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 109/131 (83%), Positives = 118/131 (90%)

Query: 185 PKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 244
           PKR +F KQHRGR+ G +SRGN ICFGRYALQ LEPAWIT+RQIEAGRRAM RNV+RGGK
Sbjct: 4   PKRTRFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGK 63

Query: 245 IWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAAS 304
           IWVRIFPDKPVT RPAETRMGSGKGS  YW AVV PGKI++EM GVPENIARKAISIAAS
Sbjct: 64  IWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAAS 123

Query: 305 KMPIKTQFVMS 315
           KMPIKTQF++S
Sbjct: 124 KMPIKTQFIIS 134

Olimarabidopsis pumila (taxid: 74718)

>sp|A4QLX0|RK16_NASOF 50S ribosomal protein L16, chloroplastic OS=Nasturtium officinale GN=rpl16 PE=3 SV=1

 Score =  232 bits (592), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 109/131 (83%), Positives = 118/131 (90%)

Query: 185 PKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 244
           PKR +F KQHRGR+ G +SRGN ICFGRYALQ LEPAWIT+RQIEAGRRAM RNV+RGGK
Sbjct: 4   PKRTRFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGK 63

Query: 245 IWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAAS 304
           IWVRIFPDKPVT RPAETRMGSGKGS  YW AVV PGKI++EM GVPENIARKAISIAAS
Sbjct: 64  IWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAAS 123

Query: 305 KMPIKTQFVMS 315
           KMPIKTQF++S
Sbjct: 124 KMPIKTQFIIS 134

Nasturtium officinale (taxid: 65948)

>sp|A4QLN1|RK16_LOBMA 50S ribosomal protein L16, chloroplastic OS=Lobularia maritima GN=rpl16 PE=3 SV=1

 Score =  232 bits (592), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 109/131 (83%), Positives = 118/131 (90%)

Query: 185 PKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 244
           PKR +F KQHRGR+ G +SRGN ICFGRYALQ LEPAWIT+RQIEAGRRAM RNV+RGGK
Sbjct: 4   PKRTRFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGK 63

Query: 245 IWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAAS 304
           IWVRIFPDKPVT RPAETRMGSGKGS  YW AVV PGKI++EM GVPENIARKAISIAAS
Sbjct: 64  IWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAAS 123

Query: 305 KMPIKTQFVMS 315
           KMPIKTQF++S
Sbjct: 124 KMPIKTQFIIS 134

Lobularia maritima (taxid: 226051)

>sp|A4QL56|RK16_DRANE 50S ribosomal protein L16, chloroplastic OS=Draba nemorosa GN=rpl16 PE=3 SV=1

 Score =  232 bits (592), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 109/131 (83%), Positives = 118/131 (90%)

Query: 185 PKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 244
           PKR +F KQHRGR+ G +SRGN ICFGRYALQ LEPAWIT+RQIEAGRRAM RNV+RGGK
Sbjct: 4   PKRTRFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGK 63

Query: 245 IWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAAS 304
           IWVRIFPDKPVT RPAETRMGSGKGS  YW AVV PGKI++EM GVPENIARKAISIAAS
Sbjct: 64  IWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAAS 123

Query: 305 KMPIKTQFVMS 315
           KMPIKTQF++S
Sbjct: 124 KMPIKTQFIIS 134

Draba nemorosa (taxid: 171822)

>sp|A4QKW8|RK16_CRUWA 50S ribosomal protein L16, chloroplastic OS=Crucihimalaya wallichii GN=rpl16 PE=3 SV=1

 Score =  232 bits (592), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 109/131 (83%), Positives = 118/131 (90%)

Query: 185 PKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 244
           PKR +F KQHRGR+ G +SRGN ICFGRYALQ LEPAWIT+RQIEAGRRAM RNV+RGGK
Sbjct: 4   PKRTRFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGK 63

Query: 245 IWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAAS 304
           IWVRIFPDKPVT RPAETRMGSGKGS  YW AVV PGKI++EM GVPENIARKAISIAAS
Sbjct: 64  IWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAAS 123

Query: 305 KMPIKTQFVMS 315
           KMPIKTQF++S
Sbjct: 124 KMPIKTQFIIS 134

Crucihimalaya wallichii (taxid: 78192)

>sp|A4QKM9|RK16_CAPBU 50S ribosomal protein L16, chloroplastic OS=Capsella bursa-pastoris GN=rpl16 PE=3 SV=1

 Score =  232 bits (592), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 109/131 (83%), Positives = 118/131 (90%)

Query: 185 PKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 244
           PKR +F KQHRGR+ G +SRGN ICFGRYALQ LEPAWIT+RQIEAGRRAM RNV+RGGK
Sbjct: 4   PKRTRFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGK 63

Query: 245 IWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAAS 304
           IWVRIFPDKPVT RPAETRMGSGKGS  YW AVV PGKI++EM GVPENIARKAISIAAS
Sbjct: 64  IWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAAS 123

Query: 305 KMPIKTQFVMS 315
           KMPIKTQF++S
Sbjct: 124 KMPIKTQFIIS 134

Capsella bursa-pastoris (taxid: 3719)

>sp|A4QKE2|RK16_BARVE 50S ribosomal protein L16, chloroplastic OS=Barbarea verna GN=rpl16 PE=3 SV=1

 Score =  232 bits (592), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 109/131 (83%), Positives = 118/131 (90%)

Query: 185 PKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 244
           PKR +F KQHRGR+ G +SRGN ICFGRYALQ LEPAWIT+RQIEAGRRAM RNV+RGGK
Sbjct: 4   PKRTRFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGK 63

Query: 245 IWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAAS 304
           IWVRIFPDKPVT RPAETRMGSGKGS  YW AVV PGKI++EM GVPENIARKAISIAAS
Sbjct: 64  IWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAAS 123

Query: 305 KMPIKTQFVMS 315
           KMPIKTQF++S
Sbjct: 124 KMPIKTQFIIS 134

Barbarea verna (taxid: 50458)

>sp|P56793|RK16_ARATH 50S ribosomal protein L16, chloroplastic OS=Arabidopsis thaliana GN=rpl16 PE=3 SV=1

 Score =  232 bits (592), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 109/131 (83%), Positives = 118/131 (90%)

Query: 185 PKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 244
           PKR +F KQHRGR+ G +SRGN ICFGRYALQ LEPAWIT+RQIEAGRRAM RNV+RGGK
Sbjct: 4   PKRTRFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGK 63

Query: 245 IWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAAS 304
           IWVRIFPDKPVT RPAETRMGSGKGS  YW AVV PGKI++EM GVPENIARKAISIAAS
Sbjct: 64  IWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAAS 123

Query: 305 KMPIKTQFVMS 315
           KMPIKTQF++S
Sbjct: 124 KMPIKTQFIIS 134

Arabidopsis thaliana (taxid: 3702)

>sp|A4QK55|RK16_ARAHI 50S ribosomal protein L16, chloroplastic OS=Arabis hirsuta GN=rpl16 PE=3 SV=1

 Score =  232 bits (592), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 109/131 (83%), Positives = 118/131 (90%)

Query: 185 PKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 244
           PKR +F KQHRGR+ G +SRGN ICFGRYALQ LEPAWIT+RQIEAGRRAM RNV+RGGK
Sbjct: 4   PKRTRFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGK 63

Query: 245 IWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAAS 304
           IWVRIFPDKPVT RPAETRMGSGKGS  YW AVV PGKI++EM GVPENIARKAISIAAS
Sbjct: 64  IWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAAS 123

Query: 305 KMPIKTQFVMS 315
           KMPIKTQF++S
Sbjct: 124 KMPIKTQFIIS 134

Arabis hirsuta (taxid: 78191)

>sp|Q09ME0|RK16_CITSI 50S ribosomal protein L16, chloroplastic OS=Citrus sinensis GN=rpl16 PE=3 SV=1

 Score =  232 bits (592), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 109/136 (80%), Positives = 121/136 (88%)

Query: 181 LLAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVK 240
           +L+ PKR +F KQHRGRM G + RGN ICFGRYALQALEPAWIT+RQIEAGRRAM RNV+
Sbjct: 1   MLSNPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVR 60

Query: 241 RGGKIWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAIS 300
           RGGKIWVRIFPDKPVT RP ETRMGSGKGS  YW AVV PG+I++EMSGV ENIARKAIS
Sbjct: 61  RGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAIS 120

Query: 301 IAASKMPIKTQFVMSG 316
           IAASKMPI+TQF++SG
Sbjct: 121 IAASKMPIRTQFIISG 136

Citrus sinensis (taxid: 2711)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	323
383930489	137	rpl16 gene product (chloroplast) [Brassi	0.421	0.992	0.816	3e-59
219674012	136	ribosomal protein L16 [Trifolium subterr	0.405	0.963	0.832	9e-59
7525070	135	ribosomal protein L16 [Arabidopsis thali	0.405	0.970	0.832	1e-58
114329692	136	ribosomal protein L16 [Citrus sinensis]	0.421	1.0	0.801	2e-58
325210984	135	ribosomal protein L16 [Gossypium thurber	0.408	0.977	0.825	2e-58
139388947	135	ribosomal protein L16 [Lepidium virginic	0.405	0.970	0.832	2e-58
313199739	135	ribosomal protein L16 [Theobroma cacao]	0.408	0.977	0.825	3e-58
295137041	135	ribosomal protein L16 [Pisum sativum] gi	0.405	0.970	0.816	4e-58
91208938	135	ribosomal protein L16 [Gossypium hirsutu	0.408	0.977	0.825	6e-58
139389301	135	ribosomal protein L16 [Aethionema grandi	0.405	0.970	0.824	7e-58

>gi|383930489|ref|YP_005089989.1| rpl16 gene product (chloroplast) [Brassica napus] gi|262400786|gb|ACY66275.1| ribosomal protein L16 [Brassica napus]

 Score =  235 bits (599), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 111/136 (81%), Positives = 120/136 (88%)

Query: 180 MLLAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNV 239
           ML   PKR KF KQHRGR+ G +SRGN ICFGRYALQ LEPAWIT+RQIEAGRRAM RN+
Sbjct: 1   MLSYNPKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNI 60

Query: 240 KRGGKIWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAI 299
           +RGGKIWVRIFPDKPVT RPAETRMGSGKGS  YW AVV PGKI++EM GVPENIARKAI
Sbjct: 61  RRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAI 120

Query: 300 SIAASKMPIKTQFVMS 315
           SIAASKMPIKTQF++S
Sbjct: 121 SIAASKMPIKTQFIIS 136

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219674012|ref|YP_002456496.1| ribosomal protein L16 [Trifolium subterraneum] gi|193788981|gb|ACF20577.1| ribosomal protein L16 [Trifolium subterraneum]

 Score =  233 bits (594), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 109/131 (83%), Positives = 118/131 (90%)

Query: 185 PKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 244
           PKR +F KQHRGRM GKA RGN ICFG+YALQALEPAWIT+RQIEAGRRAM RNV+RGGK
Sbjct: 5   PKRTRFRKQHRGRMKGKAYRGNKICFGKYALQALEPAWITSRQIEAGRRAMSRNVRRGGK 64

Query: 245 IWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAAS 304
           IWVRIFPDKPVT RP ETRMGSGKGS  YW AVV PGKI++EM GVPENIARKAISIAAS
Sbjct: 65  IWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAAS 124

Query: 305 KMPIKTQFVMS 315
           KMPI+TQF++S
Sbjct: 125 KMPIRTQFILS 135

Source: Trifolium subterraneum

Species: Trifolium subterraneum

Genus: Trifolium

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7525070|ref|NP_051095.1| ribosomal protein L16 [Arabidopsis thaliana] gi|139387289|ref|YP_001123410.1| ribosomal protein L16 [Capsella bursa-pastoris] gi|139388131|ref|YP_001123323.1| ribosomal protein L16 [Barbarea verna] gi|139389133|ref|YP_001123851.1| ribosomal protein L16 [Nasturtium officinale] gi|139389455|ref|YP_001123152.1| ribosomal protein L16 [Olimarabidopsis pumila] gi|139389679|ref|YP_001123236.1| ribosomal protein L16 [Arabis hirsuta] gi|139389838|ref|YP_001123499.1| ribosomal protein L16 [Crucihimalaya wallichii] gi|139389987|ref|YP_001123587.1| ribosomal protein L16 [Draba nemorosa] gi|139390189|ref|YP_001123762.1| ribosomal protein L16 [Lobularia maritima] gi|297837923|ref|XP_002886843.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297848250|ref|XP_002892006.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|404474648|ref|YP_006666329.1| ribosomal protein L16 (chloroplast) [Pachycladon enysii] gi|6685863|sp|P56793.1|RK16_ARATH RecName: Full=50S ribosomal protein L16, chloroplastic gi|215275546|sp|A4QK55.1|RK16_ARAHI RecName: Full=50S ribosomal protein L16, chloroplastic gi|215275547|sp|A4QKE2.1|RK16_BARVE RecName: Full=50S ribosomal protein L16, chloroplastic gi|215275550|sp|A4QKM9.1|RK16_CAPBU RecName: Full=50S ribosomal protein L16, chloroplastic gi|215275555|sp|A4QKW8.1|RK16_CRUWA RecName: Full=50S ribosomal protein L16, chloroplastic gi|215275563|sp|A4QL56.1|RK16_DRANE RecName: Full=50S ribosomal protein L16, chloroplastic gi|215275573|sp|A4QLN1.1|RK16_LOBMA RecName: Full=50S ribosomal protein L16, chloroplastic gi|215275576|sp|A4QLX0.1|RK16_NASOF RecName: Full=50S ribosomal protein L16, chloroplastic gi|215275585|sp|A4QJW8.1|RK16_OLIPU RecName: Full=50S ribosomal protein L16, chloroplastic gi|5881731|dbj|BAA84422.1| ribosomal protein L16 [Arabidopsis thaliana] gi|134286349|dbj|BAF49976.1| ribosomal protein L16 [Olimarabidopsis pumila] gi|134286434|dbj|BAF50060.1| ribosomal protein L16 [Arabis hirsuta] gi|134286522|dbj|BAF50147.1| ribosomal protein L16 [Barbarea verna] gi|134286610|dbj|BAF50234.1| ribosomal protein L16 [Capsella bursa-pastoris] gi|134286700|dbj|BAF50323.1| ribosomal protein L16 [Crucihimalaya wallichii] gi|134286789|dbj|BAF50411.1| ribosomal protein L16 [Draba nemorosa] gi|134286966|dbj|BAF50586.1| ribosomal protein L16 [Lobularia maritima] gi|134287056|dbj|BAF50675.1| ribosomal protein L16 [Nasturtium officinale] gi|297332684|gb|EFH63102.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297337848|gb|EFH68265.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|401786763|gb|AFQ07829.1| ribosomal protein L16 (chloroplast) [Pachycladon enysii]

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 109/131 (83%), Positives = 118/131 (90%)

Query: 185 PKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 244
           PKR +F KQHRGR+ G +SRGN ICFGRYALQ LEPAWIT+RQIEAGRRAM RNV+RGGK
Sbjct: 4   PKRTRFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGK 63

Query: 245 IWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAAS 304
           IWVRIFPDKPVT RPAETRMGSGKGS  YW AVV PGKI++EM GVPENIARKAISIAAS
Sbjct: 64  IWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAAS 123

Query: 305 KMPIKTQFVMS 315
           KMPIKTQF++S
Sbjct: 124 KMPIKTQFIIS 134

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|114329692|ref|YP_740513.1| ribosomal protein L16 [Citrus sinensis] gi|122166146|sp|Q09ME0.1|RK16_CITSI RecName: Full=50S ribosomal protein L16, chloroplastic gi|113952658|gb|ABI49056.1| ribosomal protein L16 [Citrus sinensis]

 Score =  232 bits (592), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 109/136 (80%), Positives = 121/136 (88%)

Query: 181 LLAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVK 240
           +L+ PKR +F KQHRGRM G + RGN ICFGRYALQALEPAWIT+RQIEAGRRAM RNV+
Sbjct: 1   MLSNPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVR 60

Query: 241 RGGKIWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAIS 300
           RGGKIWVRIFPDKPVT RP ETRMGSGKGS  YW AVV PG+I++EMSGV ENIARKAIS
Sbjct: 61  RGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAIS 120

Query: 301 IAASKMPIKTQFVMSG 316
           IAASKMPI+TQF++SG
Sbjct: 121 IAASKMPIRTQFIISG 136

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|325210984|ref|YP_004286041.1| ribosomal protein L16 [Gossypium thurberi] gi|290775846|gb|ADD62342.1| ribosomal protein L16 [Gossypium thurberi]

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 109/132 (82%), Positives = 118/132 (89%)

Query: 185 PKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 244
           PKR +F KQHRGRM G + RGN ICFGRYALQALEPAWIT+RQIEAGRRAM RNV+RGGK
Sbjct: 4   PKRTRFRKQHRGRMNGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGK 63

Query: 245 IWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAAS 304
           IWVRIFPDKPVT RP ETRMGSGKGS  YW AVV PG+I++EMSGV ENIARKAISIAAS
Sbjct: 64  IWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAAS 123

Query: 305 KMPIKTQFVMSG 316
           KMPIKTQF++SG
Sbjct: 124 KMPIKTQFIISG 135

Source: Gossypium thurberi

Species: Gossypium thurberi

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|139388947|ref|YP_001123674.1| ribosomal protein L16 [Lepidium virginicum] gi|215275572|sp|A4QLE3.1|RK16_LEPVR RecName: Full=50S ribosomal protein L16, chloroplastic gi|134286877|dbj|BAF50498.1| ribosomal protein L16 [Lepidium virginicum]

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 109/131 (83%), Positives = 118/131 (90%)

Query: 185 PKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 244
           PKR +F KQHRGR+ G +SRGN ICFGRYALQ LEPAWIT+RQIEAGRRAM RNV+RGGK
Sbjct: 4   PKRTRFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMSRNVRRGGK 63

Query: 245 IWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAAS 304
           IWVRIFPDKPVT RPAETRMGSGKGS  YW AVV PGKI++EM GVPENIARKAISIAAS
Sbjct: 64  IWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAAS 123

Query: 305 KMPIKTQFVMS 315
           KMPIKTQF++S
Sbjct: 124 KMPIKTQFIIS 134

Source: Lepidium virginicum

Species: Lepidium virginicum

Genus: Lepidium

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313199739|ref|YP_004021353.1| ribosomal protein L16 [Theobroma cacao] gi|372290965|ref|YP_005087730.1| ribosomal protein L16 (chloroplast) [Gossypium raimondii] gi|372291066|ref|YP_005087826.1| ribosomal protein L16 (chloroplast) [Gossypium darwinii] gi|372291421|ref|YP_005088317.1| ribosomal protein L16 (chloroplast) [Gossypium tomentosum] gi|372291519|ref|YP_005088413.1| ribosomal protein L16 (chloroplast) [Gossypium herbaceum subsp. africanum] gi|372291809|ref|YP_005088953.1| ribosomal protein L16 (chloroplast) [Gossypium mustelinum] gi|372291893|ref|YP_005089036.1| ribosomal protein L16 (chloroplast) [Gossypium arboreum] gi|386800873|ref|YP_006303528.1| ribosomal protein L16 (chloroplast) [Gossypium gossypioides] gi|394830662|ref|YP_006503314.1| ribosomal protein L16 (chloroplast) [Gossypium incanum] gi|394830749|ref|YP_006503397.1| ribosomal protein L16 (chloroplast) [Gossypium somalense] gi|394830835|ref|YP_006503480.1| ribosomal protein L16 (chloroplast) [Gossypium capitis-viridis] gi|394830924|ref|YP_006503563.1| ribosomal protein L16 (chloroplast) [Gossypium areysianum] gi|394831011|ref|YP_006503646.1| ribosomal protein L16 (chloroplast) [Gossypium robinsonii] gi|309321303|gb|ADO64846.1| ribosomal protein L16 [Theobroma cacao] gi|318084352|gb|ADV38828.1| ribosomal protein L16 (chloroplast) [Gossypium arboreum] gi|318084434|gb|ADV38909.1| ribosomal protein L16 (chloroplast) [Gossypium darwinii] gi|318084520|gb|ADV38994.1| ribosomal protein L16 (chloroplast) [Gossypium herbaceum subsp. africanum] gi|318084604|gb|ADV39077.1| ribosomal protein L16 (chloroplast) [Gossypium mustelinum] gi|318084683|gb|ADV39155.1| ribosomal protein L16 (chloroplast) [Gossypium raimondii] gi|318084772|gb|ADV39243.1| ribosomal protein L16 (chloroplast) [Gossypium tomentosum] gi|326457074|gb|ADZ74338.1| ribosomal protein L16 [Gossypium anomalum] gi|326457163|gb|ADZ74426.1| ribosomal protein L16 [Gossypium bickii] gi|326457252|gb|ADZ74514.1| ribosomal protein L16 [Gossypium herbaceum] gi|326457425|gb|ADZ74685.1| ribosomal protein L16 [Gossypium stocksii] gi|326457513|gb|ADZ74772.1| ribosomal protein L16 [Gossypium sturtianum] gi|328924816|gb|ADO64927.2| ribosomal protein L16 [Theobroma cacao] gi|329317107|gb|AEB90466.1| ribosomal protein L16 (chloroplast) [Gossypium gossypioides] gi|329317359|gb|AEB90715.1| ribosomal protein L16 (chloroplast) [Gossypium barbadense] gi|329317443|gb|AEB90798.1| ribosomal protein L16 (chloroplast) [Gossypium barbadense] gi|329317527|gb|AEB90881.1| ribosomal protein L16 (chloroplast) [Gossypium barbadense] gi|335354367|gb|AEH42987.1| ribosomal protein L16 [Gossypium incanum] gi|335354451|gb|AEH43070.1| ribosomal protein L16 [Gossypium somalense] gi|335354535|gb|AEH43153.1| ribosomal protein L16 (chloroplast) [Gossypium capitis-viridis] gi|335354619|gb|AEH43236.1| ribosomal protein L16 (chloroplast) [Gossypium areysianum] gi|335354703|gb|AEH43319.1| ribosomal protein L16 [Gossypium robinsonii] gi|371925973|gb|AEX57763.1| ribosomal protein L16 (chloroplast) [Theobroma cacao] gi|371926055|gb|AEX57844.1| ribosomal protein L16 (chloroplast) [Theobroma cacao] gi|371926137|gb|AEX57925.1| ribosomal protein L16 (chloroplast) [Theobroma cacao] gi|371926219|gb|AEX58006.1| ribosomal protein L16 (chloroplast) [Theobroma cacao] gi|371926301|gb|AEX58087.1| ribosomal protein L16 (chloroplast) [Theobroma cacao] gi|371926383|gb|AEX58168.1| ribosomal protein L16 (chloroplast) [Theobroma cacao] gi|371926465|gb|AEX58249.1| ribosomal protein L16 (chloroplast) [Theobroma cacao] gi|371926547|gb|AEX58330.1| ribosomal protein L16 (chloroplast) [Theobroma cacao] gi|371926629|gb|AEX58411.1| ribosomal protein L16 (chloroplast) [Theobroma cacao] gi|371926711|gb|AEX58492.1| ribosomal protein L16 (chloroplast) [Theobroma grandiflorum] gi|371926793|gb|AEX58573.1| ribosomal protein L16 (chloroplast) [Theobroma cacao]

 Score =  231 bits (590), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 109/132 (82%), Positives = 118/132 (89%)

Query: 185 PKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 244
           PKR +F KQHRGRM G + RGN ICFGRYALQALEPAWIT+RQIEAGRRAM RNV+RGGK
Sbjct: 4   PKRTRFRKQHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGK 63

Query: 245 IWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAAS 304
           IWVRIFPDKPVT RP ETRMGSGKGS  YW AVV PG+I++EMSGV ENIARKAISIAAS
Sbjct: 64  IWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAAS 123

Query: 305 KMPIKTQFVMSG 316
           KMPIKTQF++SG
Sbjct: 124 KMPIKTQFIISG 135

Source: Theobroma cacao

Species: Theobroma cacao

Genus: Theobroma

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|295137041|ref|YP_003587588.1| ribosomal protein L16 [Pisum sativum] gi|293338613|gb|ADE43586.1| ribosomal protein L16 (chloroplast) [Pisum sativum]

 Score =  231 bits (588), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 107/131 (81%), Positives = 118/131 (90%)

Query: 185 PKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 244
           PKR +F K HRGRM GKASRGN ICFG+YALQALEPAWIT+RQ+EAGRRAM RNV+RGG+
Sbjct: 4   PKRTRFRKHHRGRMKGKASRGNKICFGKYALQALEPAWITSRQLEAGRRAMSRNVRRGGQ 63

Query: 245 IWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAAS 304
           IWVRIFPDKPVT RP ETRMGSGKGS  YW AVV PGKI++EM GVPENIARKAISIAAS
Sbjct: 64  IWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAAS 123

Query: 305 KMPIKTQFVMS 315
           KMPI+TQF++S
Sbjct: 124 KMPIRTQFILS 134

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|91208938|ref|YP_538973.1| ribosomal protein L16 [Gossypium hirsutum] gi|115502621|sp|Q2L940.1|RK16_GOSHI RecName: Full=50S ribosomal protein L16, chloroplastic gi|85687452|gb|ABC73664.1| ribosomal protein L16 [Gossypium hirsutum] gi|329317191|gb|AEB90549.1| ribosomal protein L16 (chloroplast) [Gossypium hirsutum] gi|329317275|gb|AEB90632.1| ribosomal protein L16 (chloroplast) [Gossypium hirsutum]

 Score =  230 bits (587), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 109/132 (82%), Positives = 118/132 (89%)

Query: 185 PKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 244
           PKR +F KQHRGRM G + RGN ICFGRYALQALEPAWIT+RQIEAGRRAM RNV+RGGK
Sbjct: 4   PKRNRFRKQHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGK 63

Query: 245 IWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAAS 304
           IWVRIFPDKPVT RP ETRMGSGKGS  YW AVV PG+I++EMSGV ENIARKAISIAAS
Sbjct: 64  IWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAAS 123

Query: 305 KMPIKTQFVMSG 316
           KMPIKTQF++SG
Sbjct: 124 KMPIKTQFIISG 135

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|139389301|ref|YP_001123067.1| ribosomal protein L16 [Aethionema grandiflorum] gi|139390385|ref|YP_001122983.1| ribosomal protein L16 [Aethionema cordifolium] gi|215275542|sp|A4QJF2.1|RK16_AETCO RecName: Full=50S ribosomal protein L16, chloroplastic gi|215275543|sp|A4QJN6.1|RK16_AETGR RecName: Full=50S ribosomal protein L16, chloroplastic gi|134286178|dbj|BAF49807.1| ribosomal protein L16 [Aethionema cordifolium] gi|134286263|dbj|BAF49891.1| ribosomal protein L16 [Aethionema grandiflorum]

 Score =  230 bits (587), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 108/131 (82%), Positives = 117/131 (89%)

Query: 185 PKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 244
           PKR +F KQHRGR+ G + RGN ICFGRYALQ LEPAWIT+RQIEAGRRAM RNV+RGGK
Sbjct: 4   PKRTRFRKQHRGRLKGISYRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGK 63

Query: 245 IWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAAS 304
           IWVRIFPDKPVT RPAETRMGSGKGS  YW AVV PGKI++EM GVPENIARKAISIAAS
Sbjct: 64  IWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAAS 123

Query: 305 KMPIKTQFVMS 315
           KMPIKTQF++S
Sbjct: 124 KMPIKTQFIIS 134

Source: Aethionema grandiflorum

Species: Aethionema grandiflorum

Genus: Aethionema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	323
UNIPROTKB|P0C441	136	rpl16 "50S ribosomal protein L	0.408	0.970	0.681	2.3e-46
UNIPROTKB|P0C443	136	rpl16 "50S ribosomal protein L	0.408	0.970	0.681	2.3e-46
UNIPROTKB|P0C442	136	rpl16 "50S ribosomal protein L	0.408	0.970	0.681	3e-46
UNIPROTKB|Q6END6	136	rpl16 "50S ribosomal protein L	0.408	0.970	0.681	3e-46
TIGR_CMR|DET_0481	149	DET_0481 "ribosomal protein L1	0.430	0.932	0.510	4.4e-36
TIGR_CMR|CHY_2302	143	CHY_2302 "ribosomal protein L1	0.399	0.902	0.550	7.2e-36
TIGR_CMR|BA_0117	144	BA_0117 "ribosomal protein L16	0.399	0.895	0.534	4e-35
TIGR_CMR|GSU_2850	140	GSU_2850 "ribosomal protein L1	0.399	0.921	0.527	8.3e-35
UNIPROTKB|P0ADY7	136	rplP "50S ribosomal subunit pr	0.396	0.941	0.519	1.1e-32
TIGR_CMR|SPO_0488	137	SPO_0488 "ribosomal protein L1	0.402	0.948	0.515	1.4e-32

UNIPROTKB|P0C441 rpl16 "50S ribosomal protein L16, chloroplastic" [Oryza sativa (taxid:4530)]

 Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
 Identities = 90/132 (68%), Positives = 100/132 (75%)

Query:   182 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKR 241
             +  PKR +F KQHRGRM GK+ RGN ICFGRYALQALEP WITARQIEAGRRAM R  +R
Sbjct:     1 MLSPKRTRFRKQHRGRMKGKSYRGNCICFGRYALQALEPTWITARQIEAGRRAMTRYARR 60

Query:   242 GGKIWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENXXXXXXXX 301
             GGKIWVRIFPDKPVT RP ETRMGSGKGS  YW AVV PG+I++EM GV E         
Sbjct:    61 GGKIWVRIFPDKPVTIRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVSETVARAAISI 120

Query:   302 XXXXMPIKTQFV 313
                 MPI++QF+
Sbjct:   121 AASKMPIRSQFL 132

GO:0009536 "plastid" evidence=IC

UNIPROTKB|P0C443 rpl16 "50S ribosomal protein L16, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
 Identities = 90/132 (68%), Positives = 100/132 (75%)

Query:   182 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKR 241
             +  PKR +F KQHRGRM GK+ RGN ICFGRYALQALEP WITARQIEAGRRAM R  +R
Sbjct:     1 MLSPKRTRFRKQHRGRMKGKSYRGNCICFGRYALQALEPTWITARQIEAGRRAMTRYARR 60

Query:   242 GGKIWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENXXXXXXXX 301
             GGKIWVRIFPDKPVT RP ETRMGSGKGS  YW AVV PG+I++EM GV E         
Sbjct:    61 GGKIWVRIFPDKPVTIRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVSETVARAAISI 120

Query:   302 XXXXMPIKTQFV 313
                 MPI++QF+
Sbjct:   121 AASKMPIRSQFL 132

GO:0009536 "plastid" evidence=IC

UNIPROTKB|P0C442 rpl16 "50S ribosomal protein L16, chloroplastic" [Oryza sativa Indica Group (taxid:39946)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 90/132 (68%), Positives = 100/132 (75%)

Query:   182 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKR 241
             +  PKR +F KQHRGRM GK+ RGN ICFGRYALQALEP WITARQIEAGRRAM R  +R
Sbjct:     1 MLSPKRTRFRKQHRGRMKGKSYRGNCICFGRYALQALEPTWITARQIEAGRRAMTRYARR 60

Query:   242 GGKIWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENXXXXXXXX 301
             GGKIWVRIFPDKPVT RP ETRMGSGKGS  YW AVV PG+I++EM GV E         
Sbjct:    61 GGKIWVRIFPDKPVTIRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVSETVARVAISI 120

Query:   302 XXXXMPIKTQFV 313
                 MPI++QF+
Sbjct:   121 AASKMPIRSQFL 132

GO:0009536 "plastid" evidence=IC

UNIPROTKB|Q6END6 rpl16 "50S ribosomal protein L16, chloroplastic" [Oryza nivara (taxid:4536)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 90/132 (68%), Positives = 100/132 (75%)

Query:   182 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKR 241
             +  PKR +F KQHRGRM GK+ RGN ICFGRYALQALEP WITARQIEAGRRAM R  +R
Sbjct:     1 MLSPKRTRFRKQHRGRMKGKSYRGNCICFGRYALQALEPTWITARQIEAGRRAMTRYARR 60

Query:   242 GGKIWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENXXXXXXXX 301
             GGKIWVRIFPDKPVT RP ETRMGSGKGS  YW AVV PG+I++EM GV E         
Sbjct:    61 GGKIWVRIFPDKPVTIRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVSETVARVAISI 120

Query:   302 XXXXMPIKTQFV 313
                 MPI++QF+
Sbjct:   121 AASKMPIRSQFL 132

GO:0009536 "plastid" evidence=IC

TIGR_CMR|DET_0481 DET_0481 "ribosomal protein L16" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 71/139 (51%), Positives = 92/139 (66%)

Query:   185 PKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 244
             PKR+KF K  RGR  G A +GN + FG +ALQ+LE  WITARQIEA RRA+ R ++RGG+
Sbjct:     4 PKRVKFRKVQRGRRDGAAHKGNTVAFGEFALQSLEAGWITARQIEATRRAITRYIRRGGQ 63

Query:   245 IWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENXXXXXXXXXXX 304
             +W+RIFPDKP+T +PAETR G GKG+   W AVV  G+I+FE+ GV              
Sbjct:    64 VWIRIFPDKPITKKPAETRQGGGKGAPEEWVAVVRRGRIMFEIGGVTPEAAKEAMRLASY 123

Query:   305 XMPIKTQFVMSGTSTSKDE 323
              MP+KT+FV      + +E
Sbjct:   124 KMPVKTRFVARDVPAAAEE 142

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

TIGR_CMR|CHY_2302 CHY_2302 "ribosomal protein L16" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 71/129 (55%), Positives = 91/129 (70%)

Query:   185 PKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 244
             PKR+K+ + HR  + GKA  G  + FG Y LQA+E AWIT++QIEA R A+ R ++RGGK
Sbjct:     4 PKRVKYRRPHRPSLKGKAKGGTQLHFGEYGLQAVEGAWITSQQIEAARVAISRYIRRGGK 63

Query:   245 IWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENXXXXXXXXXXX 304
             IW+ IFPD P+T +PAETRMGSGKG+  YW AVV PGKI+FE++GV E            
Sbjct:    64 IWINIFPDHPITRKPAETRMGSGKGAPEYWVAVVKPGKIMFELAGVSEEVAREALRLASH 123

Query:   305 XMPIKTQFV 313
              +PIKT+FV
Sbjct:   124 KLPIKTKFV 132

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|BA_0117 BA_0117 "ribosomal protein L16" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 69/129 (53%), Positives = 89/129 (68%)

Query:   185 PKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 244
             PKR+K+ ++HRG+M G+A  G  I FG + LQA   +WIT RQIEA RRAM R +KRGGK
Sbjct:     4 PKRVKYRREHRGKMRGRAKGGTEIAFGEFGLQAQAASWITNRQIEAARRAMTRYMKRGGK 63

Query:   245 IWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENXXXXXXXXXXX 304
             +W++IFP KP TA+P E RMGSGKG+   W AVV PGKI+FE++GV E            
Sbjct:    64 VWIKIFPSKPYTAKPLEVRMGSGKGAPEGWVAVVKPGKIMFEIAGVSEEVAREALRLAAH 123

Query:   305 XMPIKTQFV 313
              +P+K +FV
Sbjct:   124 KLPVKCKFV 132

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|GSU_2850 GSU_2850 "ribosomal protein L16" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 68/129 (52%), Positives = 87/129 (67%)

Query:   185 PKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 244
             PKR+K  KQ +GRM G A RG  + FG + LQA E  W+ +RQIEA R AM R +KRGGK
Sbjct:     4 PKRVKHRKQMKGRMKGDAQRGASLAFGEFGLQATECGWVDSRQIEAARIAMTRYIKRGGK 63

Query:   245 IWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENXXXXXXXXXXX 304
             IW+R+FPDKP+T++PAETRMG GKGS   W  VV PGK+++EM GV E            
Sbjct:    64 IWIRLFPDKPLTSKPAETRMGKGKGSPDSWVCVVKPGKVLYEMEGVTEEIAREAFRLAAH 123

Query:   305 XMPIKTQFV 313
              +P+ T+F+
Sbjct:   124 KLPVGTKFI 132

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

UNIPROTKB|P0ADY7 rplP "50S ribosomal subunit protein L16" [Escherichia coli K-12 (taxid:83333)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 67/129 (51%), Positives = 85/129 (65%)

Query:   185 PKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 244
             PKR KF K H+GR  G A +G  + FG + L+A+    +TARQIEA RRAM R VKR GK
Sbjct:     4 PKRTKFRKMHKGRNRGLA-QGTDVSFGSFGLKAVGRGRLTARQIEAARRAMTRAVKRQGK 62

Query:   245 IWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENXXXXXXXXXXX 304
             IW+R+FPDKP+T +P   RMG GKG+  YW A++ PGK+++EM GVPE            
Sbjct:    63 IWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGKVLYEMDGVPEELAREAFKLAAA 122

Query:   305 XMPIKTQFV 313
              +PIKT FV
Sbjct:   123 KLPIKTTFV 131

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000049 "tRNA binding" evidence=IEA

TIGR_CMR|SPO_0488 SPO_0488 "ribosomal protein L16" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 67/130 (51%), Positives = 88/130 (67%)

Query:   185 PKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 244
             PKR KF K  +GR+ G A  G+ + FG Y L+ALEP  +TARQIEA RRAM R++KR G+
Sbjct:     4 PKRTKFRKMFKGRIHGLAKGGSDLNFGTYGLKALEPERVTARQIEAARRAMTRHMKRQGR 63

Query:   245 IWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENXXXXXXXXXXX 304
             +W+RIFPD PVT++P E RMG GKGS  YWA  V PG+++FE+ GV +            
Sbjct:    64 VWIRIFPDTPVTSKPTEVRMGKGKGSVDYWACKVKPGRVMFEIDGVNDEIAREALRLAAM 123

Query:   305 XMPIKTQFVM 314
              +PIKT+ V+
Sbjct:   124 KLPIKTRVVV 133

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042255 "ribosome assembly" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0ZIY1	RK16_VITVI	No assigned EC number	0.8106	0.4086	0.9777	yes	no
A4GYU8	RK16_POPTR	No assigned EC number	0.8153	0.4024	0.9629	yes	no
Q2PMP8	RK16_SOYBN	No assigned EC number	0.8030	0.4086	0.9777	yes	no
P56793	RK16_ARATH	No assigned EC number	0.8320	0.4055	0.9703	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	Al_scaffold_0002_938	annotation not avaliable (135 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	fgenesh2_kg.6__3575__AT4G01310.1	annotation not avaliable (264 aa)	•		•	•	•		•		0.986
	fgenesh2_kg.1__466__AT1G05190.1	annotation not avaliable (223 aa)	•		•	•	•		•		0.985
	fgenesh2_kg.4__2465__AT2G43030.1	annotation not avaliable (271 aa)	•			•	•		•		0.980
	fgenesh2_kg.1__3924__AT1G48350.1	annotation not avaliable (170 aa)	•			•	•		•		0.980
	scaffold_303832.1	annotation not avaliable (297 aa)	•			•	•		•		0.973
	scaffold_303456.1	annotation not avaliable (125 aa)	•		•	•	•		•		0.967
	fgenesh2_kg.1__3276__ATCG00800.1	annotation not avaliable (160 aa)	•		•	•			•		0.967
	fgenesh2_kg.2__679__ATCG00800.1	annotation not avaliable (160 aa)	•		•	•			•		0.967
	Al_scaffold_0002_934	annotation not avaliable (274 aa)	•		•	•	•		•		0.967
	fgenesh1_pg.C_scaffold_1061000001	annotation not avaliable (103 aa)	•			•			•		0.966

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	323
CHL00044	135	CHL00044, rpl16, ribosomal protein L16	1e-94
PRK09203	138	PRK09203, rplP, 50S ribosomal protein L16; Reviewe	3e-84
TIGR01164	126	TIGR01164, rplP_bact, ribosomal protein L16, bacte	2e-72
pfam00252	129	pfam00252, Ribosomal_L16, Ribosomal protein L16p/L	4e-69
COG0197	146	COG0197, RplP, Ribosomal protein L16/L10E [Transla	6e-64
cd01433	112	cd01433, Ribosomal_L16_L10e, Ribosomal_L16_L10e: L	6e-51
PRK04199	172	PRK04199, rpl10e, 50S ribosomal protein L10e; Revi	3e-04

>gnl|CDD|176985 CHL00044, rpl16, ribosomal protein L16

 Score =  276 bits (708), Expect = 1e-94
 Identities = 101/132 (76%), Positives = 111/132 (84%)

Query: 185 PKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 244
           PKR KF KQHRGRM G + RGN ICFGRYALQALEPAWIT+RQIEAGRRA+ R  +RGGK
Sbjct: 4   PKRTKFRKQHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAITRYARRGGK 63

Query: 245 IWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAAS 304
           IW+RIFPDKPVT RPAETRMGSGKGS  YW AVV PG+I++EM GV E IAR AI IAA 
Sbjct: 64  IWIRIFPDKPVTMRPAETRMGSGKGSPEYWVAVVKPGRILYEMGGVSETIARAAIKIAAY 123

Query: 305 KMPIKTQFVMSG 316
           KMPIKTQF++S 
Sbjct: 124 KMPIKTQFIISE 135

Length = 135

>gnl|CDD|236411 PRK09203, rplP, 50S ribosomal protein L16; Reviewed

 Score =  249 bits (639), Expect = 3e-84
 Identities = 87/134 (64%), Positives = 108/134 (80%), Gaps = 2/134 (1%)

Query: 180 MLLAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNV 239
           ML   PKR K+ KQH+GR  GKA RGN + FG + L+ALEP WITARQIEA R AM R++
Sbjct: 1   MLQ--PKRTKYRKQHKGRNRGKAKRGNTVAFGEFGLKALEPGWITARQIEAARIAMTRHI 58

Query: 240 KRGGKIWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAI 299
           KRGGK+W+RIFPDKPVT +PAE RMG GKGS  YW AVV PG+I+FE++GV E +AR+A+
Sbjct: 59  KRGGKVWIRIFPDKPVTKKPAEVRMGKGKGSPEYWVAVVKPGRILFEIAGVSEELAREAL 118

Query: 300 SIAASKMPIKTQFV 313
            +AA+K+PIKT+FV
Sbjct: 119 RLAAAKLPIKTKFV 132

Length = 138

>gnl|CDD|211627 TIGR01164, rplP_bact, ribosomal protein L16, bacterial/organelle

 Score =  219 bits (560), Expect = 2e-72
 Identities = 87/124 (70%), Positives = 100/124 (80%)

Query: 185 PKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 244
           PKR K+ KQHRGRM GKA RGN + FG Y LQALEP WITARQIEA R AM R VKRGGK
Sbjct: 3   PKRTKYRKQHRGRMKGKAKRGNTVAFGEYGLQALEPGWITARQIEAARVAMTRYVKRGGK 62

Query: 245 IWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAAS 304
           +W+RIFPDKP T +P ETRMG GKG+  YW AVV PGKI+FE++GVPE +AR+A  +AAS
Sbjct: 63  LWIRIFPDKPYTKKPLETRMGKGKGNPEYWVAVVKPGKILFEIAGVPEEVAREAFRLAAS 122

Query: 305 KMPI 308
           K+PI
Sbjct: 123 KLPI 126

This model describes bacterial and organellar ribosomal protein L16. The homologous protein of the eukaryotic cytosol is designated L10 [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 126

>gnl|CDD|215820 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e

 Score =  211 bits (539), Expect = 4e-69
 Identities = 75/129 (58%), Positives = 95/129 (73%), Gaps = 1/129 (0%)

Query: 185 PKRIKFPKQHRGRM-TGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGG 243
           PKR K+ K  +GR+  G A  GN + FG Y L+ALEP  ITARQIEA R A+ R +KRGG
Sbjct: 1   PKRTKYRKYQKGRLEYGGAVPGNKLAFGDYGLKALEPGRITARQIEAARIAINRYLKRGG 60

Query: 244 KIWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAA 303
           K+W+R+FPDKPVT +PAETRMG GKG    W A V PG+I+FE+ GV E +A++A+  AA
Sbjct: 61  KLWIRVFPDKPVTKKPAETRMGKGKGKPEGWVARVKPGQILFEIGGVSEEVAKEALRRAA 120

Query: 304 SKMPIKTQF 312
           SK+PIKT+ 
Sbjct: 121 SKLPIKTKI 129

Length = 129

>gnl|CDD|223275 COG0197, RplP, Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis]

 Score =  198 bits (506), Expect = 6e-64
 Identities = 75/132 (56%), Positives = 96/132 (72%), Gaps = 2/132 (1%)

Query: 184 GPKRIKFPKQHRGRMTGK--ASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKR 241
            PKR K+ KQH+GR  G   A  GN + FG Y L ALEP  ITARQIEA R A  R +KR
Sbjct: 4   QPKRTKYRKQHKGRGPGITIAKGGNKVFFGEYGLVALEPGQITARQIEAARIAANRYLKR 63

Query: 242 GGKIWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISI 301
           GG +W+R+FPDKP+T +P E RMG GKG    WAA V PG+++FE++GVPE +AR+A+  
Sbjct: 64  GGGLWIRVFPDKPLTEKPGEDRMGKGKGKPEGWAARVKPGRVLFEIAGVPEELAREALRR 123

Query: 302 AASKMPIKTQFV 313
           AA+K+P+KT+FV
Sbjct: 124 AAAKLPVKTKFV 135

Length = 146

>gnl|CDD|238714 cd01433, Ribosomal_L16_L10e, Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts

 Score =  163 bits (416), Expect = 6e-51
 Identities = 62/112 (55%), Positives = 81/112 (72%), Gaps = 2/112 (1%)

Query: 204 RGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKR-GGKIWVRIFPDKPVTARPAET 262
           +GN + FG Y L ALEP  ITA Q+EA R A+ R +K+ GGK+W+R+FPD PVT +P ET
Sbjct: 1   KGNKLFFGEYGLVALEPGRITAEQLEAARIAINRYLKKKGGKLWIRVFPDHPVTKKPLET 60

Query: 263 RMGSGKGSHAYWAAVVTPGKIIFEMSGVP-ENIARKAISIAASKMPIKTQFV 313
           RMG GKG    W A V PG+I+FE+ GVP E +A++A+  AA K+PIKT+ V
Sbjct: 61  RMGKGKGKPEGWVARVKPGQILFEVRGVPEEEVAKEALRRAAKKLPIKTKIV 112

Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with the 30S subunit, binding of aminoacyl-tRNA and interaction with antibiotics. L16 is required for the function of elongation factor P (EF-P), a protein involved in peptide bond synthesis through the stimulation of peptidyl transferase activity by the ribosome. Mutations in L16 and the adjoining bases of 23S rRNA confer antibiotic resistance in bacteria, suggesting a role for L16 in the formation of the antibiotic binding site. The GTPase RbgA (YlqF) is essential for the assembly of the large subunit, and it is believed to regulate the incorporation of L16. L10e is the archaeal and eukaryotic cytosolic homolog of bacterial L16. L16 and L10e exhibit structural differences at the N-terminus. Length = 112

>gnl|CDD|235252 PRK04199, rpl10e, 50S ribosomal protein L10e; Reviewed

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 18/116 (15%)

Query: 215 LQALEPAWITARQIEAGR----RAMVRNVKRGG-KIWVRIFP------DKPVTARPAETR 263
           L   EP  I    +EA R    + + + V R    + +R++P      +K  T   A+ R
Sbjct: 49  LVVEEPCQIRHNALEAARIAANKYLTKTVGRSNYHLKIRVYPHHVLRENKMATGAGAD-R 107

Query: 264 MGSGK----GSHAYWAAVVTPGKIIFEMSGVPENI--ARKAISIAASKMPIKTQFV 313
           +  G     G     AA V  G+ IF +   PE++  A++A+  AA K+P   + V
Sbjct: 108 VSDGMRLAFGKPVGTAARVEKGQKIFTVRVNPEHLEAAKEALRRAAMKLPTPCRIV 163

Length = 172

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	323
CHL00044	135	rpl16 ribosomal protein L16	100.0
PRK09203	138	rplP 50S ribosomal protein L16; Reviewed	100.0
TIGR01164	126	rplP_bact ribosomal protein L16, bacterial/organel	100.0
COG0197	146	RplP Ribosomal protein L16/L10E [Translation, ribo	100.0
PF00252	133	Ribosomal_L16: Ribosomal protein L16p/L10e; InterP	100.0
cd01433	112	Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an e	100.0
KOG3422	221	consensus Mitochondrial ribosomal protein L16 [Tra	100.0
TIGR00279	172	L10e ribosomal protein L10.e. L10.e is distantly r	100.0
PRK04199	172	rpl10e 50S ribosomal protein L10e; Reviewed	100.0
PTZ00173	213	60S ribosomal protein L10; Provisional	99.96
KOG0857	212	consensus 60s ribosomal protein L10 [Translation,	98.31

>CHL00044 rpl16 ribosomal protein L16

Probab=100.00  E-value=6e-51  Score=347.75  Aligned_cols=135  Identities=75%  Similarity=1.241  Sum_probs=132.4

Q ss_pred             hcCCCCCCCCCCCCCCCCCCCCCCceeEeeceEEEEecCceecHHHHHHHHHHHHhhhccCceEEEEeCCCCceecCCcc
Q 045554          182 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGKIWVRIFPDKPVTARPAE  261 (323)
Q Consensus       182 ML~PKktKyrK~~KGRikG~s~~g~~L~fG~yGLkAlE~GrITa~QLEAAR~aInR~LKK~gklWIRVfP~~PVTKKPaE  261 (323)
                      ||+||+|||+|+|||+++|.++++++|.||+|||+++|+|+|+++||||||++|+|+|++++++|||+|||+|||+||.|
T Consensus         1 ml~Pk~~k~~K~~k~~~~g~~~~~~~l~~G~~GL~a~e~~~i~~~qiEaaR~~i~r~lkk~~~i~irv~P~~pvtkkp~e   80 (135)
T CHL00044          1 MLSPKRTKFRKQHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAITRYARRGGKIWIRIFPDKPVTMRPAE   80 (135)
T ss_pred             CCCCCccccccccCCCCCCcCCCCCeEeeccEEEEEccCcEECHHHHHHHHHHHHHhhhcCcEEEEEECCCcceEeCccc
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCceEEEEEEcCCCEEEEEecCCHHHHHHHHHHhhccCCCcEEEEEcC
Q 045554          262 TRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAASKMPIKTQFVMSG  316 (323)
Q Consensus       262 tRMGKGKGkId~WVArVK~GqIIFEI~GVs~~~AkeALk~Aa~KLPiKtkIV~ke  316 (323)
                      +|||+|||+|+||||+|++|+||||++|+++++|++||++|++|||++|+||.++
T Consensus        81 ~RMGkGKG~~~~~va~V~~G~ilfEi~g~~~~~ak~al~~a~~KLP~k~~~v~~~  135 (135)
T CHL00044         81 TRMGSGKGSPEYWVAVVKPGRILYEMGGVSETIARAAIKIAAYKMPIKTQFIISE  135 (135)
T ss_pred             ccccCCCCCccEEEEEECCCcEEEEEeCCCHHHHHHHHHHHhhcCCCcEEEEecC
Confidence            9999999999999999999999999999999999999999999999999999754

>PRK09203 rplP 50S ribosomal protein L16; Reviewed

Probab=100.00  E-value=1.3e-49  Score=340.11  Aligned_cols=134  Identities=63%  Similarity=1.141  Sum_probs=132.2

Q ss_pred             hcCCCCCCCCCCCCCCCCCCCCCCceeEeeceEEEEecCceecHHHHHHHHHHHHhhhccCceEEEEeCCCCceecCCcc
Q 045554          182 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGKIWVRIFPDKPVTARPAE  261 (323)
Q Consensus       182 ML~PKktKyrK~~KGRikG~s~~g~~L~fG~yGLkAlE~GrITa~QLEAAR~aInR~LKK~gklWIRVfP~~PVTKKPaE  261 (323)
                      ||+||+|||+|+||||++|.+.++++|.||+|||+++|+|+|+++||||||++|+|+|++.+++|||+|||+|||+||+|
T Consensus         1 ml~Pk~~k~~K~~kgr~~g~~~~~~~l~~G~~gL~a~e~g~i~~~qlEaaR~~i~r~Lkk~g~~~irv~P~~~vt~k~~~   80 (138)
T PRK09203          1 MLQPKRTKYRKQHKGRNRGKAKRGNTVAFGEFGLKALEPGWITARQIEAARIAMTRHIKRGGKVWIRIFPDKPVTKKPAE   80 (138)
T ss_pred             CCCCCccccccCCCCCCCCCCCCCCeEeeccEEEEECcCCeEcHHHHHHHHHHHHHHhhcCceEEEEeCCCccEEcChhh
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCceEEEEEEcCCCEEEEEecCCHHHHHHHHHHhhccCCCcEEEEEc
Q 045554          262 TRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAASKMPIKTQFVMS  315 (323)
Q Consensus       262 tRMGKGKGkId~WVArVK~GqIIFEI~GVs~~~AkeALk~Aa~KLPiKtkIV~k  315 (323)
                      +|||+|||+|+||||+|++|+||||+++++++.|++||++|++|||++|+|+.+
T Consensus        81 ~RMGkGKG~~~~~varVk~G~iifEi~~~~~~~a~~al~~a~~KLP~~~kii~~  134 (138)
T PRK09203         81 VRMGKGKGSPEYWVAVVKPGRILFEIAGVSEELAREALRLAAAKLPIKTKFVKR  134 (138)
T ss_pred             ccccCCCCCCcEEEEEECCCCEEEEEeCCCHHHHHHHHHHHhccCCCcEEEEEe
Confidence            999999999999999999999999999999999999999999999999999986

>TIGR01164 rplP_bact ribosomal protein L16, bacterial/organelle

Probab=100.00  E-value=2.3e-47  Score=322.05  Aligned_cols=126  Identities=69%  Similarity=1.197  Sum_probs=124.3

Q ss_pred             cCCCCCCCCCCCCCCCCCCCCCCceeEeeceEEEEecCceecHHHHHHHHHHHHhhhccCceEEEEeCCCCceecCCccc
Q 045554          183 AGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGKIWVRIFPDKPVTARPAET  262 (323)
Q Consensus       183 L~PKktKyrK~~KGRikG~s~~g~~L~fG~yGLkAlE~GrITa~QLEAAR~aInR~LKK~gklWIRVfP~~PVTKKPaEt  262 (323)
                      |+||+|||+|+||++++|.+.++++|.||+|||+++|+++|+++||||||++|+|+|++++++|||+|||+|||+||+|+
T Consensus         1 l~Pk~~k~~K~~k~~~~g~~~~~~~l~~G~~gL~a~e~~~i~~~qlEaaR~~i~r~l~~~~~~~irv~P~~~vt~k~~~~   80 (126)
T TIGR01164         1 LSPKRTKYRKQHRGRMKGKAKRGNTVAFGEYGLQALEPGWITARQIEAARVAMTRYVKRGGKLWIRIFPDKPYTKKPLET   80 (126)
T ss_pred             CCCCccccccccCCCCCCcCCCCCeeeeccEeeEECcCCeEcHHHHHHHHHHHHHHHhhCceEEEEECCCcCEEeCchhc
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCceEEEEEEcCCCEEEEEecCCHHHHHHHHHHhhccCCC
Q 045554          263 RMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAASKMPI  308 (323)
Q Consensus       263 RMGKGKGkId~WVArVK~GqIIFEI~GVs~~~AkeALk~Aa~KLPi  308 (323)
                      |||+|||+|++|||+|++|+||||+++++++.|++||++|++|||+
T Consensus        81 RMGkGKG~~~~~varV~~G~ilfEi~~~~~~~a~~al~~a~~KLP~  126 (126)
T TIGR01164        81 RMGKGKGNPEYWVAVVKPGKILFEIAGVPEEVAREAFRLAASKLPI  126 (126)
T ss_pred             cccCCCCCCCEEEEEECCCCEEEEEeCCCHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999999999999999999999996

This model describes bacterial and organellar ribosomal protein L16. The homologous protein of the eukaryotic cytosol is designated L10

>COG0197 RplP Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3e-47  Score=330.03  Aligned_cols=137  Identities=55%  Similarity=0.946  Sum_probs=133.2

Q ss_pred             hhcCCCCCCCCCCCCCCCCCC--CCCCceeEeeceEEEEecCceecHHHHHHHHHHHHhhhccCceEEEEeCCCCceecC
Q 045554          181 LLAGPKRIKFPKQHRGRMTGK--ASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGKIWVRIFPDKPVTAR  258 (323)
Q Consensus       181 MML~PKktKyrK~~KGRikG~--s~~g~~L~fG~yGLkAlE~GrITa~QLEAAR~aInR~LKK~gklWIRVfP~~PVTKK  258 (323)
                      ||++|++|||+|.|+++..|.  +..|+.+.||+|||+++|++|||++||||||+++||+|++.+++|||+|||+|+|+|
T Consensus         1 ~ml~Pk~tk~rk~~~g~~~~~~~~~~G~~~~fg~~gL~a~e~~~It~~qiEAARia~~R~lkr~g~~wIRvfP~~~~~~k   80 (146)
T COG0197           1 HMLQPKRTKYRKQHKGRGPGITIAKGGNKVFFGEYGLVALEPGQITARQIEAARIAANRYLKRGGGLWIRVFPDKPLTEK   80 (146)
T ss_pred             CCcCCCcceeecccCCCCCCceeccCCccccceEEEEEEcccceecHHHHHHHHHHHHHHhhhcCCEEEEEcCCceeeeC
Confidence            579999999999999999998  889999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCCCCCceEEEEEEcCCCEEEEEecCCHHHHHHHHHHhhccCCCcEEEEEcCC
Q 045554          259 PAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAASKMPIKTQFVMSGT  317 (323)
Q Consensus       259 PaEtRMGKGKGkId~WVArVK~GqIIFEI~GVs~~~AkeALk~Aa~KLPiKtkIV~ke~  317 (323)
                      |.|+|||+|||+|++|||+|++|++|||+.|++++.|+|||++|++|||++|+++...+
T Consensus        81 p~e~Rmg~GkG~pegwaArVkpG~vlfei~g~~e~~A~EAlr~Aa~KLP~~~~~v~~~~  139 (146)
T COG0197          81 PGEDRMGKGKGKPEGWAARVKPGRVLFEIAGVPEELAREALRRAAAKLPVKTKFVIRIE  139 (146)
T ss_pred             CCcccccCCCCCccEEEEEecCCcEEEEEecCcHHHHHHHHHHHhhcCCCceEEEEEEe
Confidence            99999999999999999999999999999999999999999999999999999888764

>PF00252 Ribosomal_L16: Ribosomal protein L16p/L10e; InterPro: IPR016180 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=6.8e-46  Score=313.82  Aligned_cols=130  Identities=52%  Similarity=0.902  Sum_probs=124.8

Q ss_pred             CCCCCCCCCCC-CCC-CCCCCCCceeEeeceEEEEecCceecHHHHHHHHHHHHhhhccCceEEEEeCCCCceecCCccc
Q 045554          185 PKRIKFPKQHR-GRM-TGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGKIWVRIFPDKPVTARPAET  262 (323)
Q Consensus       185 PKktKyrK~~K-GRi-kG~s~~g~~L~fG~yGLkAlE~GrITa~QLEAAR~aInR~LKK~gklWIRVfP~~PVTKKPaEt  262 (323)
                      |+++||||+|| +|+ .+.+..+++|.||+|||+++|+|+|+++||||||++|+|+|++++++|||+|||+|||+||+|+
T Consensus         1 Pk~~kyrk~~k~~r~~~~~~~~~~~l~~g~~gl~a~~~g~l~~~qlEa~R~~i~r~lkk~~~~~i~v~p~~~vTkk~~~~   80 (133)
T PF00252_consen    1 PKRTKYRKYQKYPRINYGKSKPGNKLKFGDYGLKALEPGRLTSNQLEAARIAINRYLKKNGKLWIRVFPHHPVTKKPLET   80 (133)
T ss_dssp             TSCCSTSSSSS-SSTTTSTTSSCSSSSSSSEEEEESS-EEEEHHHHHHHHHHHHHHHHHTSTEEESSSCEEEEEE-SSSS
T ss_pred             CCCCccCCCCCCCCCCcccccCccEEEeeeeeEEEeeeeeechhhhHHHHHHHHHHhhhheeEEEEeeeeeeeeeehhhh
Confidence            89999999999 888 7888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCceEEEEEEcCCCEEEEEec-CCHHHHHHHHHHhhccCCCcEEEEE
Q 045554          263 RMGSGKGSHAYWAAVVTPGKIIFEMSG-VPENIARKAISIAASKMPIKTQFVM  314 (323)
Q Consensus       263 RMGKGKGkId~WVArVK~GqIIFEI~G-Vs~~~AkeALk~Aa~KLPiKtkIV~  314 (323)
                      |||+|||+|++|||+|++|+||||++| ++++.|++||++|++|||++|+||+
T Consensus        81 RMG~GKG~~~~~~a~V~~G~iifEi~~~v~~~~a~~alk~a~~KLP~~~~~v~  133 (133)
T PF00252_consen   81 RMGKGKGKIDHWVARVKPGQIIFEIGGKVNEEEAKEALKRAAKKLPIKTKFVS  133 (133)
T ss_dssp             SSSSSSCEEEEEEEEESTTEEEEEEESGSCHHHHHHHHHHHHHTSSSCEEEE-
T ss_pred             hhccCCCCccEEEEEECCCcEEEEECCcCCHHHHHHHHHHHHhhCCCCEEEeC
Confidence            999999999999999999999999999 9999999999999999999999984

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a structural domain with an alpha/beta-hammerhead fold, where the beta-hammerhead motif is similar to that in barrel-sandwich hybrids. Domains of this structure can be found in ribosomal proteins L10e and L16. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 2ZJR_J 1Y69_K 3DLL_J 2ZJQ_J 2ZJP_J 3PIO_J 3CF5_J 3PIP_J 2ZKR_h 3J11_O ....

>cd01433 Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts

Probab=100.00  E-value=2.2e-39  Score=265.94  Aligned_cols=109  Identities=56%  Similarity=0.983  Sum_probs=106.6

Q ss_pred             CceeEeeceEEEEecCceecHHHHHHHHHHHHhhhccC-ceEEEEeCCCCceecCCcccccCCCCCCceEEEEEEcCCCE
Q 045554          205 GNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRG-GKIWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKI  283 (323)
Q Consensus       205 g~~L~fG~yGLkAlE~GrITa~QLEAAR~aInR~LKK~-gklWIRVfP~~PVTKKPaEtRMGKGKGkId~WVArVK~GqI  283 (323)
                      ++++.||+|||+++|+++|+++||||||++|+|+|++. +++|||+|||+|+|+||.|+|||+|||+|++|||+|++|++
T Consensus         2 ~~~~~~g~~gL~a~e~~~i~~~~lEa~R~~i~r~l~k~~~~~~ir~~p~~~vt~k~~~~rMGkGKG~~~~~~a~v~~G~i   81 (112)
T cd01433           2 GNKLFFGEYGLVALEPGRITAEQLEAARIAINRYLKKKGGKLWIRVFPDHPVTKKPLETRMGKGKGKPEGWVARVKPGQI   81 (112)
T ss_pred             CceeccceEEEEECcCCeECHHHHHHHHHHHHHHhhhcCceEEEEecCCccEEECccccccCCCCCCccEEEEEECCCCE
Confidence            57899999999999999999999999999999999998 99999999999999999999999999999999999999999


Q ss_pred             EEEEecCC-HHHHHHHHHHhhccCCCcEEEE
Q 045554          284 IFEMSGVP-ENIARKAISIAASKMPIKTQFV  313 (323)
Q Consensus       284 IFEI~GVs-~~~AkeALk~Aa~KLPiKtkIV  313 (323)
                      |||+.+++ ++.|++||++|++|||++|+|+
T Consensus        82 ifEi~~~~~~~~~~~alk~a~~Klp~~~k~i  112 (112)
T cd01433          82 LFEVRGVPEEEVAKEALRRAAKKLPIKTKIV  112 (112)
T ss_pred             EEEEeCcCcHHHHHHHHHHhhccCCCcEEEC
Confidence            99999998 9999999999999999999985

Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with the 30S subunit, binding of aminoacyl-tRNA and interaction with antibiotics. L16 is required for the function of elongation factor P (EF-P), a protein involved in peptide bond synthesis through the stimulation of peptidyl transferase activity by the ribosome. Mutations in L16 and the adjoining bases of 23S rRNA confer antibiotic resistance in bacteria, suggesting a role for L16 in the formation of the antibiotic binding site. The GTPase RbgA (YlqF) is essential for the assembly of the large subunit, and it is believed to regulate the incorporation of L16. L10e is the archaeal and eukaryotic cytosolic homolog of bacterial L16. L16 and L10e exhibit structural differences at the N-terminus.

>KOG3422 consensus Mitochondrial ribosomal protein L16 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.5e-39  Score=294.53  Aligned_cols=135  Identities=44%  Similarity=0.714  Sum_probs=129.9

Q ss_pred             cCCCCCCCCCCCCCCC-CCCCCCCceeEeeceEEEEecCceecHHHHHHHHHHHHhhhc--cCceEEEEeCCCCceecCC
Q 045554          183 AGPKRIKFPKQHRGRM-TGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVK--RGGKIWVRIFPDKPVTARP  259 (323)
Q Consensus       183 L~PKktKyrK~~KGRi-kG~s~~g~~L~fG~yGLkAlE~GrITa~QLEAAR~aInR~LK--K~gklWIRVfP~~PVTKKP  259 (323)
                      ..|+++||+|++|||+ +|.+.++++|.||+|||+++++|+|++.|+|++|.++.|+++  ++|++|.|++||+|+|+||
T Consensus        40 ~~P~r~k~rk~~rgr~~rG~s~~gt~L~~g~Ygl~a~~~g~l~~~~~e~~r~~~~r~~~~~~~~~iWrr~~p~~Pvt~K~  119 (221)
T KOG3422|consen   40 YAPERTKYRKIQRGRVPRGGSERGTELIFGRYGLRAKSGGILDSAQFEAMRLTRARKMNPRNNGKIWRRPAPNLPVTVKG  119 (221)
T ss_pred             ccccchhhhHhhccccccCCccccceeeechhhheeccCceeeHHHHHHHHHHHHHhcCcccCccEEEEecCCCceeecC
Confidence            4499999999999998 899999999999999999999999999999999988888876  5899999999999999999


Q ss_pred             cccccCCCCCCceEEEEEEcCCCEEEEEec-CCHHHHHHHHHHhhccCCCcEEEEEcCC
Q 045554          260 AETRMGSGKGSHAYWAAVVTPGKIIFEMSG-VPENIARKAISIAASKMPIKTQFVMSGT  317 (323)
Q Consensus       260 aEtRMGKGKGkId~WVArVK~GqIIFEI~G-Vs~~~AkeALk~Aa~KLPiKtkIV~ke~  317 (323)
                      .|+|||+|||+||||||+|++|+||||++| +++++|++||.+||+|||++++||++++
T Consensus       120 ~etRMG~GKGa~d~wva~V~~GrIl~EmgG~~~~~~Ar~al~~aa~klp~~~efVs~~~  178 (221)
T KOG3422|consen  120 NETRMGGGKGAIDHWVARVKAGRILFEMGGDVEEEEARQALLQAAHKLPFKYEFVSEEM  178 (221)
T ss_pred             cceeccCCCCCcceeEEEecCCcEEEEeCCcccHHHHHHHHHHHHhcCCccEEEeeHhh
Confidence            999999999999999999999999999999 9999999999999999999999998865

>TIGR00279 L10e ribosomal protein L10

Probab=100.00  E-value=2.1e-33  Score=249.27  Aligned_cols=104  Identities=27%  Similarity=0.334  Sum_probs=99.9

Q ss_pred             eEEEEecCceecHHHHHHHHHHHHhhhccC-----ceEEEEeCCCCceecCCcccccCC---------CCCCceEEEEEE
Q 045554          213 YALQALEPAWITARQIEAGRRAMVRNVKRG-----GKIWVRIFPDKPVTARPAETRMGS---------GKGSHAYWAAVV  278 (323)
Q Consensus       213 yGLkAlE~GrITa~QLEAAR~aInR~LKK~-----gklWIRVfP~~PVTKKPaEtRMGK---------GKGkId~WVArV  278 (323)
                      ..|+++|+++||++||||||++++|+|+|.     |++|||+|||+|+|+||+++|||+         |||++++|||+|
T Consensus        47 ~~L~a~E~~~I~~~qiEAaR~a~~r~lkk~~g~~~~k~wIRvfP~~~lt~kp~~trmGaDRlq~GMr~gkG~p~~wvArV  126 (172)
T TIGR00279        47 VHLVAKEPEQIRHNALEAARIAANKYMTRRAGRMGYHLKIRVYPHHILRENKMATGAGADRIQQGMRGAFGKPVGTAARV  126 (172)
T ss_pred             EEEEECccceecHHHHHHHHHHHHHHHHhhcCccceEEEEEECCCCceecCchhhhcCchhhhcccccCCCCccEEEEEE
Confidence            379999999999999999999999999995     599999999999999999999997         999999999999


Q ss_pred             cCCCEEEEEecC--CHHHHHHHHHHhhccCCCcEEEEEcC
Q 045554          279 TPGKIIFEMSGV--PENIARKAISIAASKMPIKTQFVMSG  316 (323)
Q Consensus       279 K~GqIIFEI~GV--s~~~AkeALk~Aa~KLPiKtkIV~ke  316 (323)
                      ++|+||||+.++  +++.|++||++|++|||++|+|+..+
T Consensus       127 k~Gqiifei~~~~~~~~~AkeAlr~A~~KLP~~~kiv~~~  166 (172)
T TIGR00279       127 KIGQKIFSVWTKPSNFDVAKEALRRAAMKFPVPCKIVIEK  166 (172)
T ss_pred             CcCCEEEEEEeecCCHHHHHHHHHHHhccCCCcEEEEEec
Confidence            999999999998  88999999999999999999999764

e. L10.e is distantly related to eubacterial ribosomal protein L16.

>PRK04199 rpl10e 50S ribosomal protein L10e; Reviewed

Probab=100.00  E-value=5.4e-33  Score=246.56  Aligned_cols=104  Identities=27%  Similarity=0.362  Sum_probs=98.6

Q ss_pred             EEEEecCceecHHHHHHHHHHHHhhhccC-c----eEEEEeCCCCceecCCcccccC-----CC----CCCceEEEEEEc
Q 045554          214 ALQALEPAWITARQIEAGRRAMVRNVKRG-G----KIWVRIFPDKPVTARPAETRMG-----SG----KGSHAYWAAVVT  279 (323)
Q Consensus       214 GLkAlE~GrITa~QLEAAR~aInR~LKK~-g----klWIRVfP~~PVTKKPaEtRMG-----KG----KGkId~WVArVK  279 (323)
                      ||+++|+++|+++||||||++++|+|++. |    ++|||+|||+|+|+||+++|||     +|    ||++++|||+|+
T Consensus        48 ~L~a~E~~~I~~~qiEAaR~ai~r~lkk~~G~~~~k~wIrvfP~~~lt~kp~~~rmGAdRmg~GMr~akG~p~~wva~Vk  127 (172)
T PRK04199         48 SLVVEEPCQIRHNALEAARIAANKYLTKTVGRSNYHLKIRVYPHHVLRENKMATGAGADRVSDGMRLAFGKPVGTAARVE  127 (172)
T ss_pred             EEEEcccccccHHHHHHHHHHHHHHHHhccCCcccEEEEEeCCCcceecChhHhhcchhhhccCcccCCCCccEEEEEEC
Confidence            99999999999999999999999999996 6    9999999999999999999665     99    999999999999


Q ss_pred             CCCEEEEEecC--CHHHHHHHHHHhhccCCCcEEEEEcCC
Q 045554          280 PGKIIFEMSGV--PENIARKAISIAASKMPIKTQFVMSGT  317 (323)
Q Consensus       280 ~GqIIFEI~GV--s~~~AkeALk~Aa~KLPiKtkIV~ke~  317 (323)
                      +|+||||+.++  +++.|++||++|++|||++|+|+..+-
T Consensus       128 ~G~ilfei~~~~~~~~~akeAlr~a~~KLP~k~kiv~~~~  167 (172)
T PRK04199        128 KGQKIFTVRVNPEHLEAAKEALRRAAMKLPTPCRIVVEKG  167 (172)
T ss_pred             cCCEEEEEEecCCCHHHHHHHHHHhhccCCCcEEEEEecc
Confidence            99999999965  899999999999999999999997653

>PTZ00173 60S ribosomal protein L10; Provisional

Probab=99.96  E-value=1.1e-29  Score=231.58  Aligned_cols=104  Identities=23%  Similarity=0.265  Sum_probs=96.9

Q ss_pred             eEEEEecCceecHHHHHHHHHHHHhhh-ccCc----eEEEEeCCCCce------ecCC---cccccCCCCCCceEEEEEE
Q 045554          213 YALQALEPAWITARQIEAGRRAMVRNV-KRGG----KIWVRIFPDKPV------TARP---AETRMGSGKGSHAYWAAVV  278 (323)
Q Consensus       213 yGLkAlE~GrITa~QLEAAR~aInR~L-KK~g----klWIRVfP~~PV------TKKP---aEtRMGKGKGkId~WVArV  278 (323)
                      ..|+++|.++||++||||||+++||+| |+.|    ++|||+|||++|      |++|   +++|||+|||++++|||+|
T Consensus        50 v~Lvs~E~~qIss~aLEAaRia~nr~l~K~~Gk~~fhl~IRv~P~hvlR~nKm~T~AgAdrlq~gMr~gfGkp~g~vArV  129 (213)
T PTZ00173         50 VHIVSDEYEQISSEALEAARISANKYMVKRAGKDGFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPNGTCARV  129 (213)
T ss_pred             EEEEEcccccccHHHHHHHHHHHHHhhhhhcCCccceEEEEEcCCcccccccccccccCchhhhhcccCCCCccEEEEEE
Confidence            379999999999999999999999999 6654    599999999999      7844   7899999999999999999


Q ss_pred             cCCCEEEEEec--CCHHHHHHHHHHhhccCCCcEEEEEcC
Q 045554          279 TPGKIIFEMSG--VPENIARKAISIAASKMPIKTQFVMSG  316 (323)
Q Consensus       279 K~GqIIFEI~G--Vs~~~AkeALk~Aa~KLPiKtkIV~ke  316 (323)
                      ++|+||||+.+  ++.+.|++||++|++|||++++|+..+
T Consensus       130 k~Gqiifei~~~~~~~~~AkeALrrA~~KlP~~~kIv~~~  169 (213)
T PTZ00173        130 RIGQILLSIRTKEAYVPQAIEALRRAKYKFPGRQKIVVSN  169 (213)
T ss_pred             CcCCEEEEEecccCCHHHHHHHHHHhcccCCCeEEEEEec
Confidence            99999999999  899999999999999999999999763

>KOG0857 consensus 60s ribosomal protein L10 [Translation, ribosomal structure and biogenesis]

Probab=98.31  E-value=4.6e-07  Score=83.71  Aligned_cols=100  Identities=22%  Similarity=0.260  Sum_probs=84.4

Q ss_pred             EEEecCceecHHHHHHHHHHHHhhhcc-----CceEEEEeCC-------CCceecCCc---ccccCCCCCCceEEEEEEc
Q 045554          215 LQALEPAWITARQIEAGRRAMVRNVKR-----GGKIWVRIFP-------DKPVTARPA---ETRMGSGKGSHAYWAAVVT  279 (323)
Q Consensus       215 LkAlE~GrITa~QLEAAR~aInR~LKK-----~gklWIRVfP-------~~PVTKKPa---EtRMGKGKGkId~WVArVK  279 (323)
                      ++..+.-.++.+++||+|...++++.+     .+++-+|+||       ++.+++.|.   ++-|...+|++.+.||+|.
T Consensus        52 ~~~~~~~~l~~~~~eA~ri~~~~~~~~~~~~d~~~~r~~~~~~fhv~~i~k~ls~~~~~RLQtgmrga~gkp~G~varV~  131 (212)
T KOG0857|consen   52 LVSNEIEQLSSEALEAARICANKPMVKSKGKDAFHLRVRVHPNFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTVARVH  131 (212)
T ss_pred             hhhHHHHhHHHHHHHHhhhcccCcccccccccchhhhhhcccchhHHHHhhhhcccchhhhhhcccccccCccceEEEEE
Confidence            455667889999999999999999985     4788999999       455556676   2346777999999999999


Q ss_pred             CCCEEEEEec--CCHHHHHHHHHHhhccCCCcEEEEE
Q 045554          280 PGKIIFEMSG--VPENIARKAISIAASKMPIKTQFVM  314 (323)
Q Consensus       280 ~GqIIFEI~G--Vs~~~AkeALk~Aa~KLPiKtkIV~  314 (323)
                      -|++||.+..  -+.+.+.|+|.++..|+|...+++.
T Consensus       132 iGqvi~Svrtk~~nkeh~ieal~rak~kfpG~qki~v  168 (212)
T KOG0857|consen  132 IGQVIMSVRTKLQNKEHVIEALRRAKFKFPGRQKIVV  168 (212)
T ss_pred             cCceEEEeecCcccHHHHHHHHHhccccCCCceeEEe
Confidence            9999999998  4579999999999999999877663

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	323
3bbo_O	135	Homology Model For The Spinach Chloroplast 50s Subu		1e-52
1nkw_K	142	Crystal Structure Of The Large Ribosomal Subunit Fr		1e-37
1njm_K	141	The Crystal Structure Of The 50s Large Ribosomal Su		1e-37
1wki_A	141	Solution Structure Of Ribosomal Protein L16 From Th		2e-35
1pnu_K	124	Crystal Structure Of A Streptomycin Dependent Ribos		4e-35
1vsa_K	141	Crystal Structure Of A 70s Ribosome-Trna Complex Re		6e-35
3fin_Q	136	T. Thermophilus 70s Ribosome In Complex With Mrna,		2e-34
3pyo_M	136	Crystal Structure Of A Complex Containing Domain 3		6e-34
1p85_K	136	Real Space Refined Coordinates Of The 50s Subunit F		7e-34
2gya_K	131	Structure Of The 50s Subunit Of A Pre-Translocation		1e-33

>pdb|3BBO|O Chain O, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 135

Iteration: 1
 Score =  203 bits (517), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 95/132 (71%), Positives = 106/132 (80%)
Query: 185 PKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 244
           PKR +F KQHRGRM G + RGN ICFGRYALQALEPAWIT+RQIEAGRRAM RN +RGGK
Sbjct: 4   PKRTRFRKQHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNARRGGK 63
Query: 245 IWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENXXXXXXXXXXX 304
           IWVRIFPDKPVT RPAETRMGSGKGS  YW AVV PG+I++E+SGV EN           
Sbjct: 64  IWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGRILYEISGVAENIARRAVAIAAS 123
Query: 305 XMPIKTQFVMSG 316
            MPI+TQF++SG
Sbjct: 124 KMPIRTQFIISG 135

>pdb|1NKW|K Chain K, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 142

Iteration: 1
 Score =  153 bits (387), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 74/134 (55%), Positives = 93/134 (69%), Gaps = 2/134 (1%)
Query: 180 MLLAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNV 239
           MLL  PKR KF KQ RGRMTG A  G+ + FG Y L A+EPAWI + QIEA R  M R+ 
Sbjct: 2   MLL--PKRTKFRKQFRGRMTGDAKGGDYVAFGDYGLIAMEPAWIKSNQIEACRIVMSRHF 59
Query: 240 KRGGKIWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENXXXXXX 299
           +RGGKI++RIFPDKPVT +PAETRMG GKG+  YW +VV PG+++FE++GV E       
Sbjct: 60  RRGGKIYIRIFPDKPVTKKPAETRMGKGKGAVEYWVSVVKPGRVMFEVAGVTEEQAKEAF 119
Query: 300 XXXXXXMPIKTQFV 313
                 +PI+T+ V
Sbjct: 120 RLAGHKLPIQTKMV 133

>pdb|1NJM|K Chain K, The Crystal Structure Of The 50s Large Ribosomal Subunit From Deinococcus Radiodurans Complexed With A Trna Acceptor Stem Mimic (Asm) And The Antibiotic Sparsomycin Length = 141

Iteration: 1
 Score =  153 bits (387), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 74/134 (55%), Positives = 93/134 (69%), Gaps = 2/134 (1%)
Query: 180 MLLAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNV 239
           MLL  PKR KF KQ RGRMTG A  G+ + FG Y L A+EPAWI + QIEA R  M R+ 
Sbjct: 1   MLL--PKRTKFRKQFRGRMTGDAKGGDYVAFGDYGLIAMEPAWIKSNQIEACRIVMSRHF 58
Query: 240 KRGGKIWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENXXXXXX 299
           +RGGKI++RIFPDKPVT +PAETRMG GKG+  YW +VV PG+++FE++GV E       
Sbjct: 59  RRGGKIYIRIFPDKPVTKKPAETRMGKGKGAVEYWVSVVKPGRVMFEVAGVTEEQAKEAF 118
Query: 300 XXXXXXMPIKTQFV 313
                 +PI+T+ V
Sbjct: 119 RLAGHKLPIQTKMV 132

>pdb|1WKI|A Chain A, Solution Structure Of Ribosomal Protein L16 From Thermus Thermophilus Hb8 Length = 141

Iteration: 1
 Score =  146 bits (368), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 68/129 (52%), Positives = 89/129 (68%)
Query: 185 PKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 244
           P+R+K+ KQ RGR+ G    G+ + FG Y L ALEPAWITA+QIEA R AMVR+ +RGGK
Sbjct: 4   PRRMKYRKQQRGRLKGATKGGDYVAFGDYGLVALEPAWITAQQIEAARVAMVRHFRRGGK 63
Query: 245 IWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENXXXXXXXXXXX 304
           I++RIFPDKP T +P E RMG GKG+   + AVV PG+++FE++GV E            
Sbjct: 64  IFIRIFPDKPYTKKPLEVRMGKGKGNVEGYVAVVKPGRVMFEVAGVTEEQAMEALRIAGH 123
Query: 305 XMPIKTQFV 313
            +PIKT+ V
Sbjct: 124 KLPIKTKIV 132

>pdb|1PNU|K Chain K, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 124

Iteration: 1
 Score =  145 bits (365), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 67/123 (54%), Positives = 86/123 (69%)
Query: 189 KFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGKIWVR 248
           KF KQ RGRMTG A  G+ + FG Y L A+EPAWI + QIEA R  M R+ +RGGKI++R
Sbjct: 2   KFRKQFRGRMTGDAKGGDYVAFGDYGLIAMEPAWIKSNQIEACRIVMSRHFRRGGKIYIR 61
Query: 249 IFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENXXXXXXXXXXXXMPI 308
           IFPDKPVT +PAETRMG GKG+  YW +VV PG+++FE++GV E             +PI
Sbjct: 62  IFPDKPVTKKPAETRMGKGKGAVEYWVSVVKPGRVMFEVAGVTEEQAKEAFRLAGHKLPI 121
Query: 309 KTQ 311
           +T+
Sbjct: 122 QTK 124

>pdb|1VSA|K Chain K, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals Functional Interactions And Rearrangements. This File, 1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome Subunit Is In The File 2ow8 Length = 141

Iteration: 1
 Score =  144 bits (363), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 67/129 (51%), Positives = 89/129 (68%)
Query: 185 PKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 244
           P+R+K+ KQ RGR+ G    G+ + FG + L ALEPAWITA+QIEA R AMVR+ +RGGK
Sbjct: 4   PRRMKYRKQQRGRLKGATKGGDYVAFGDFGLVALEPAWITAQQIEAARVAMVRHFRRGGK 63
Query: 245 IWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENXXXXXXXXXXX 304
           I++RIFPDKP T +P E RMG GKG+   + AVV PG+++FE++GV E            
Sbjct: 64  IFIRIFPDKPYTKKPLEVRMGKGKGNVEGYVAVVKPGRVMFEVAGVTEEQAMEALRIAGH 123
Query: 305 XMPIKTQFV 313
            +PIKT+ V
Sbjct: 124 KLPIKTKIV 132

>pdb|3FIN|Q Chain Q, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit Length = 136

Iteration: 1
 Score =  142 bits (359), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 67/127 (52%), Positives = 87/127 (68%)
Query: 187 RIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGKIW 246
           R+K+ KQ RGR+ G    G+ + FG Y L ALEPAWITA+QIEA R AMVR+ +RGGKI+
Sbjct: 1   RMKYRKQQRGRLKGATKGGDYVAFGDYGLVALEPAWITAQQIEAARVAMVRHFRRGGKIF 60
Query: 247 VRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENXXXXXXXXXXXXM 306
           +RIFPDKP T +P E RMG GKG+   + AVV PG+++FE++GV E             +
Sbjct: 61  IRIFPDKPYTKKPLEVRMGKGKGNVEGYVAVVKPGRVMFEVAGVTEEQAMEALRIAGHKL 120
Query: 307 PIKTQFV 313
           PIKT+ V
Sbjct: 121 PIKTKIV 127

>pdb|3PYO|M Chain M, Crystal Structure Of A Complex Containing Domain 3 From The Psiv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 50s Subunit Of The First 70s Ribosome. Length = 136

Iteration: 1
 Score =  141 bits (355), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 66/127 (51%), Positives = 87/127 (68%)
Query: 187 RIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGKIW 246
           R+K+ KQ RGR+ G    G+ + FG + L ALEPAWITA+QIEA R AMVR+ +RGGKI+
Sbjct: 1   RMKYRKQQRGRLKGATKGGDYVAFGDFGLVALEPAWITAQQIEAARVAMVRHFRRGGKIF 60
Query: 247 VRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENXXXXXXXXXXXXM 306
           +RIFPDKP T +P E RMG GKG+   + AVV PG+++FE++GV E             +
Sbjct: 61  IRIFPDKPYTKKPLEVRMGKGKGNVEGYVAVVKPGRVMFEVAGVTEEQAMEALRIAGHKL 120
Query: 307 PIKTQFV 313
           PIKT+ V
Sbjct: 121 PIKTKIV 127

>pdb|1P85|K Chain K, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 136

Iteration: 1
 Score =  140 bits (354), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 67/129 (51%), Positives = 84/129 (65%), Gaps = 1/129 (0%)
Query: 185 PKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 244
           PKR KF K H+GR  G A  G  + FG + L+A+    +TARQIEA RRAM R VKR GK
Sbjct: 4   PKRTKFRKMHKGRNRGLAQ-GTDVSFGSFGLKAVGRGRLTARQIEAARRAMTRAVKRQGK 62
Query: 245 IWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENXXXXXXXXXXX 304
           IW+R+FPDKP+T +P   RMG GKG+  YW A++ PGK+++EM GVPE            
Sbjct: 63  IWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGKVLYEMDGVPEELAREAFKLAAA 122
Query: 305 XMPIKTQFV 313
            +PIKT FV
Sbjct: 123 KLPIKTTFV 131

>pdb|2GYA|K Chain K, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 131

Iteration: 1
 Score =  140 bits (353), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/129 (51%), Positives = 84/129 (65%), Gaps = 1/129 (0%)
Query: 185 PKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 244
           PKR KF K H+GR  G A  G  + FG + L+A+    +TARQIEA RRAM R VKR GK
Sbjct: 2   PKRTKFRKMHKGRNRGLAQ-GTDVSFGSFGLKAVGRGRLTARQIEAARRAMTRAVKRQGK 60
Query: 245 IWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENXXXXXXXXXXX 304
           IW+R+FPDKP+T +P   RMG GKG+  YW A++ PGK+++EM GVPE            
Sbjct: 61  IWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGKVLYEMDGVPEELAREAFKLAAA 120
Query: 305 XMPIKTQFV 313
            +PIKT FV
Sbjct: 121 KLPIKTTFV 129

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	323
3bbo_O	135	Ribosomal protein L16; large ribosomal subunit, sp	3e-51
2zjr_J	142	50S ribosomal protein L16; ribosome, large ribosom	5e-50
3r8s_M	136	50S ribosomal protein L16; protein biosynthesis, R	2e-48
2ftc_I	118	Mitochondrial ribosomal protein L16, 39S ribosomal	1e-38
1ffk_F	157	Ribosomal protein L10E; ribosome assembly, RNA-RNA	7e-24
2pa2_A	151	60S ribosomal protein L10; QM protein, , structura	4e-22
3j0l_J	219	Ribosomal protein L10; mammalia, translation, elon	6e-21
1vq8_H	171	50S ribosomal protein L10E; ribosome 50S, protein-	2e-18
3iz5_I	224	60S ribosomal protein L10 (L10E); eukaryotic ribos	4e-18
2zkr_h	214	60S ribosomal protein L10; protein-RNA complex, 60	8e-18
4a17_H	215	RPL10, 60S ribosomal protein L10; eukaryotic ribos	3e-15

>3bbo_O Ribosomal protein L16; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2 Length = 135

 Score =  165 bits (418), Expect = 3e-51
 Identities = 106/137 (77%), Positives = 120/137 (87%), Gaps = 2/137 (1%)

Query: 180 MLLAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNV 239
           ML   PKR +F KQHRGRM G + RGN ICFGRYALQALEPAWIT+RQIEAGRRAM RN 
Sbjct: 1   MLS--PKRTRFRKQHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNA 58

Query: 240 KRGGKIWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAI 299
           +RGGKIWVRIFPDKPVT RPAETRMGSGKGS  YW AVV PG+I++E+SGV ENIAR+A+
Sbjct: 59  RRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGRILYEISGVAENIARRAV 118

Query: 300 SIAASKMPIKTQFVMSG 316
           +IAASKMPI+TQF++SG
Sbjct: 119 AIAASKMPIRTQFIISG 135

>2zjr_J 50S ribosomal protein L16; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.41.4.2 PDB: 1sm1_K* 2zjp_J* 2zjq_J 1nkw_K 3cf5_J* 3dll_J* 3pio_J* 1njm_K* 1nwx_K* 1njp_K* 1xbp_K* 1y69_K 1nwy_K* 3pip_J* 1pnu_K 1pny_K 1vor_N 1vou_N 1vow_N 1voy_N ... Length = 142

 Score =  162 bits (411), Expect = 5e-50
 Identities = 78/134 (58%), Positives = 100/134 (74%), Gaps = 2/134 (1%)

Query: 180 MLLAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNV 239
           MLL  PKR KF KQ RGRMTG A  G+ + FG Y L A+EPAWI + QIEA R  M R+ 
Sbjct: 2   MLL--PKRTKFRKQFRGRMTGDAKGGDYVAFGDYGLIAMEPAWIKSNQIEACRIVMSRHF 59

Query: 240 KRGGKIWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAI 299
           +RGGKI++RIFPDKPVT +PAETRMG GKG+  YW +VV PG+++FE++GV E  A++A 
Sbjct: 60  RRGGKIYIRIFPDKPVTKKPAETRMGKGKGAVEYWVSVVKPGRVMFEVAGVTEEQAKEAF 119

Query: 300 SIAASKMPIKTQFV 313
            +A  K+PI+T+ V
Sbjct: 120 RLAGHKLPIQTKMV 133

>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ... Length = 136

 Score =  158 bits (400), Expect = 2e-48
 Identities = 75/134 (55%), Positives = 97/134 (72%), Gaps = 3/134 (2%)

Query: 180 MLLAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNV 239
           ML   PKR KF K H+GR  G A +G  + FG + L+A+    +TARQIEA RRAM R V
Sbjct: 1   MLQ--PKRTKFRKMHKGRNRGLA-QGTDVSFGSFGLKAVGRGRLTARQIEAARRAMTRAV 57

Query: 240 KRGGKIWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAI 299
           KR GKIW+R+FPDKP+T +P   RMG GKG+  YW A++ PGK+++EM GVPE +AR+A 
Sbjct: 58  KRQGKIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGKVLYEMDGVPEELAREAF 117

Query: 300 SIAASKMPIKTQFV 313
            +AA+K+PIKT FV
Sbjct: 118 KLAAAKLPIKTTFV 131

>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I Length = 118

 Score =  131 bits (331), Expect = 1e-38
 Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 3/117 (2%)

Query: 198 MTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNV--KRGGKIWVRIFPDKPV 255
           + G ++       G +A+ AL   ++     E  R  + R++  K    IW    P KP+
Sbjct: 2   IRGPSTEATEFTEGNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFAIWRVPAPFKPI 61

Query: 256 TARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPEN-IARKAISIAASKMPIKTQ 311
           T +    RMG GKG+  ++   V  G+++ EM G  E    +  +   A K+P   +
Sbjct: 62  TRKSVGHRMGGGKGAIDHYVTPVKAGRLVVEMGGRCEFEEVQGFLDQVAHKLPFAAK 118

>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1jj2_H 1k73_J* 1k8a_J* 1k9m_J* 1kc8_J* 1kd1_J* 1kqs_H* 1m1k_J* 1m90_J* 1n8r_J* 1nji_J* 1q7y_J* 1q81_J* 1q82_J* 1q86_J* 1qvf_H 1qvg_H 1w2b_H 3cxc_H* 1giy_P ... Length = 157

 Score = 94.6 bits (235), Expect = 7e-24
 Identities = 26/120 (21%), Positives = 35/120 (29%), Gaps = 10/120 (8%)

Query: 205 GNLICFGRYA----LQALEPAWITARQIEAGRRAMVRNVKRGG-----KIWVRIFPDKPV 255
           GN      Y         +P  I    +EA R A  R V+  G     K  +R FP   +
Sbjct: 34  GNNGAGPTYPAQVENVVEKPVQIRHNALEAARNAANRFVQNSGAAANYKFRIRKFPFHVI 93

Query: 256 TARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAASKMPIKTQFVMS 315
             +     M +  G     AA        F     P+     A   A  K+        S
Sbjct: 94  REQD-GDGMRAPFGKSVGTAARSHGANHDFIAWVNPDPAVEFAWRRAYMKVTPTVNIDSS 152

>2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Homo sapiens} SCOP: d.41.4.1 Length = 151

 Score = 89.7 bits (222), Expect = 4e-22
 Identities = 23/117 (19%), Positives = 43/117 (36%), Gaps = 16/117 (13%)

Query: 215 LQALEPAWITARQIEAGRRAMVRNV-----KRGGKIWVRIFPDKPVTARP---------A 260
           + + E   +++  +EA R    + +     K G  I VR+ P   +              
Sbjct: 21  MVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRL 80

Query: 261 ETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPEN--IARKAISIAASKMPIKTQFVMS 315
           +T M    G      A V  G++I  +    +N     +A+  A  K P + +  +S
Sbjct: 81  QTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHIS 137

>3j0l_J Ribosomal protein L10; mammalia, translation, elongation cycle, tRNA, ribosome; 9.80A {Oryctolagus cuniculus} PDB: 3j0q_J 3izc_I 3izs_I 3o58_J 3o5h_J 3u5e_I 3u5i_I Length = 219

 Score = 88.6 bits (219), Expect = 6e-21
 Identities = 25/148 (16%), Positives = 46/148 (31%), Gaps = 20/148 (13%)

Query: 184 GPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKR-- 241
                K      G+         L       L + E   +++  +EA R    + +    
Sbjct: 23  AVPDSKIRIYDLGKKKATVDEFPLCVH----LVSNELEQLSSEALEAARICANKYMTTVS 78

Query: 242 ---GGKIWVRIFPDKPVTARPA---------ETRMGSGKGSHAYWAAVVTPGKIIFEMSG 289
                 + VR+ P   +              +  M    G     AA V  G+IIF +  
Sbjct: 79  GRDAFHLRVRVHPFHVLRINKMLSCAGADRLQQGMRGAWGKPHGLAARVDIGQIIFSVRT 138

Query: 290 VPEN--IARKAISIAASKMPIKTQFVMS 315
              N  +  + +  A  K P + + ++S
Sbjct: 139 KDSNKDVVVEGLRRARYKFPGQQKIILS 166

>1vq8_H 50S ribosomal protein L10E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1vq4_H* 1vq5_H* 1vq6_H* 1vq7_H* 1s72_H* 1vq9_H* 1vqk_H* 1vql_H* 1vqm_H* 1vqn_H* 1vqo_H* 1vqp_H* 2otj_H* 2otl_H* 2qa4_H* 2qex_H* 1yhq_H* 1yi2_H* 1yij_H* 1yit_H* ... Length = 171

 Score = 80.5 bits (198), Expect = 2e-18
 Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 21/149 (14%)

Query: 184 GPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNV-KRG 242
           G    K  +   GR   +    +     + +L   E   +    +EA R +  R++ K  
Sbjct: 22  GIPGSKIAQHKMGRK--QKDADDY--PVQISLIVEETVQLRHGSLEASRLSANRHLIKEL 77

Query: 243 GK-----IWVRIFPDKPVTARPA---------ETRMGSGKGSHAYWAAVVTPGKIIFEMS 288
           G+     + +R FP + +                 M +  G     AA V  G+ +F   
Sbjct: 78  GEEGDYKMTLRKFPHQVLRENKQATGAGADRVSDGMRAAFGKIVGTAARVQAGEQLFTAY 137

Query: 289 GVPENI--ARKAISIAASKMPIKTQFVMS 315
              E+    ++A   A +K+    +   S
Sbjct: 138 CNVEDAEHVKEAFRRAYNKITPSCRIDSS 166

>2zkr_h 60S ribosomal protein L10; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 214

 Score = 79.7 bits (196), Expect = 8e-18
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 20/148 (13%)

Query: 184 GPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNV---- 239
           G    K      GR   K     L       + + E   +++  +EA R    + +    
Sbjct: 25  GVPDAKIRIFDLGRKKAKVDEFPLCGH----MVSDEYEQLSSEALEAARICANKYMVKSC 80

Query: 240 -KRGGKIWVRIFPDKPVTARP---------AETRMGSGKGSHAYWAAVVTPGKIIFEMSG 289
            K G  I VR+ P   +              +T M    G      A V  G++I  +  
Sbjct: 81  GKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVAKVHIGQVIMSIRT 140

Query: 290 VPEN--IARKAISIAASKMPIKTQFVMS 315
             +N     +A+  A  K P + +  +S
Sbjct: 141 KLQNKEHVIEALRRAKFKFPGRQKIHIS 168

>4a17_H RPL10, 60S ribosomal protein L10; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_H 4a1c_H 4a1e_H Length = 215

 Score = 72.4 bits (177), Expect = 3e-15
 Identities = 29/148 (19%), Positives = 50/148 (33%), Gaps = 20/148 (13%)

Query: 184 GPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNV---- 239
           G    +      GR          +      + + E   IT+  +EA R A  +N+    
Sbjct: 25  GVPDARIRIYDSGRKKATVEEFPYVV----HIVSDEKEQITSEALEAARIAANKNLIKFI 80

Query: 240 -KRGGKIWVRIFPDKPVTARP---------AETRMGSGKGSHAYWAAVVTPGKIIFEMSG 289
            K    +  R+ P   +              ++ M    G     AA V  G I+F +  
Sbjct: 81  SKDAFHLRCRVHPWHVLRINKMLSCAGADRLQSGMRGAFGKALGKAARVDIGSILFSVRV 140

Query: 290 VPEN--IARKAISIAASKMPIKTQFVMS 315
              +   A  A++ A +K P + + V S
Sbjct: 141 KEPHVKYAIDALTRAKAKFPGRQKVVTS 168

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	323
3r8s_M	136	50S ribosomal protein L16; protein biosynthesis, R	100.0
2zjr_J	142	50S ribosomal protein L16; ribosome, large ribosom	100.0
3bbo_O	135	Ribosomal protein L16; large ribosomal subunit, sp	100.0
2ftc_I	118	Mitochondrial ribosomal protein L16, 39S ribosomal	100.0
1ffk_F	157	Ribosomal protein L10E; ribosome assembly, RNA-RNA	100.0
2pa2_A	151	60S ribosomal protein L10; QM protein, , structura	100.0
1vq8_H	171	50S ribosomal protein L10E; ribosome 50S, protein-	100.0
2zkr_h	214	60S ribosomal protein L10; protein-RNA complex, 60	100.0
3j21_N	181	50S ribosomal protein L10E; archaea, archaeal, KIN	99.97
4a17_H	215	RPL10, 60S ribosomal protein L10; eukaryotic ribos	99.97
3j0l_J	219	Ribosomal protein L10; mammalia, translation, elon	99.97
3iz5_I	224	60S ribosomal protein L10 (L10E); eukaryotic ribos	99.95

>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ...

Probab=100.00  E-value=1.2e-52  Score=358.05  Aligned_cols=134  Identities=54%  Similarity=0.994  Sum_probs=132.2

Q ss_pred             hcCCCCCCCCCCCCCCCCCCCCCCceeEeeceEEEEecCceecHHHHHHHHHHHHhhhccCceEEEEeCCCCceecCCcc
Q 045554          182 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGKIWVRIFPDKPVTARPAE  261 (323)
Q Consensus       182 ML~PKktKyrK~~KGRikG~s~~g~~L~fG~yGLkAlE~GrITa~QLEAAR~aInR~LKK~gklWIRVfP~~PVTKKPaE  261 (323)
                      ||+||+|||+|+||||++|.+ ++++|.||+|||+++|+++||++||||||++|+|+|+++|++|||+|||+|||+||+|
T Consensus         1 ml~Pk~~k~rK~~kgr~~g~~-~g~~l~fG~~gL~a~e~~~it~~qiEaaR~ai~R~lkr~gk~wirv~P~~pvt~k~~e   79 (136)
T 3r8s_M            1 MLQPKRTKFRKMHKGRNRGLA-QGTDVSFGSFGLKAVGRGRLTARQIEAARRAMTRAVKRQGKIWIRVFPDKPITEKPLA   79 (136)
T ss_dssp             CCCCSSCSSSSCCCCCCCSCC-SCCSCCSSSEEEEECSCEEEEHHHHHHHHHHHHHTTCSCSEEEECCCCCEEEEECCSS
T ss_pred             CCCCCCCCcCcCcCCCCCCcC-CCceEecceEEEEECcCCeECHHHHHHHHHHHHHhhhcCcEEEEEECCCCceEeCchh
Confidence            699999999999999999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCceEEEEEEcCCCEEEEEecCCHHHHHHHHHHhhccCCCcEEEEEcC
Q 045554          262 TRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAASKMPIKTQFVMSG  316 (323)
Q Consensus       262 tRMGKGKGkId~WVArVK~GqIIFEI~GVs~~~AkeALk~Aa~KLPiKtkIV~ke  316 (323)
                      +|||+|||+|+||||+|++|+||||++|++++.|++||++|++|||++|+||.++
T Consensus        80 tRMGkGKG~~~~wva~Vk~G~ilfEi~g~~~~~A~eAlr~a~~KLP~~~kiv~~~  134 (136)
T 3r8s_M           80 VRMGKGKGNVEYWVALIQPGKVLYEMDGVPEELAREAFKLAAAKLPIKTTFVTKT  134 (136)
T ss_dssp             CCSCSSCCEEEEEEEEECTTCEEEEEESSCHHHHHHHHHHHHTTCSSCEEEEECC
T ss_pred             ccCCCCCCCCCEEEEEECCCCEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEEec
Confidence            9999999999999999999999999999999999999999999999999999875

>2zjr_J 50S ribosomal protein L16; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.41.4.2 PDB: 1sm1_K* 2zjp_J* 2zjq_J 1nkw_K 3cf5_J* 3dll_J* 3pio_J* 1njm_K* 1nwx_K* 1njp_K* 1xbp_K* 1y69_K 1nwy_K* 3pip_J* 1pnu_K 1pny_K 1vor_N 1vou_N 1vow_N 1voy_N ...

Probab=100.00  E-value=2e-53  Score=364.98  Aligned_cols=137  Identities=55%  Similarity=0.989  Sum_probs=130.3

Q ss_pred             hhcCCCCCCCCCCCCCCCCCCCCCCceeEeeceEEEEecCceecHHHHHHHHHHHHhhhccCceEEEEeCCCCceecCCc
Q 045554          181 LLAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGKIWVRIFPDKPVTARPA  260 (323)
Q Consensus       181 MML~PKktKyrK~~KGRikG~s~~g~~L~fG~yGLkAlE~GrITa~QLEAAR~aInR~LKK~gklWIRVfP~~PVTKKPa  260 (323)
                      |||+||+|||||+||||++|.+.++++|.||+|||+++|+++||++||||||++|+|+|+++|++|||+|||+|||+||+
T Consensus         1 mml~Pkr~k~rK~~kgr~~g~~~~g~~l~fG~~gL~a~e~~~it~~qiEAaR~ai~R~lkr~gk~wirv~P~~pvt~Kp~   80 (142)
T 2zjr_J            1 MMLLPKRTKFRKQFRGRMTGDAKGGDYVAFGDYGLIAMEPAWIKSNQIEACRIVMSRHFRRGGKIYIRIFPDKPVTKKPA   80 (142)
T ss_dssp             -----CCCSSCCCCCCCCCCSCSSCCSSSSSSCEEEECSCBCCBHHHHHHHHHHHHHHCSSCCCCCCCCCCCCEECCCSS
T ss_pred             CCCCCCcCccccCCCCCcCCcccCCcceecceEEEEECcCCeECHHHHHHHHHHHHHHhhhCcEEEEEeCCCcceEcCcc
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCceEEEEEEcCCCEEEEEecCCHHHHHHHHHHhhccCCCcEEEEEcCC
Q 045554          261 ETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAASKMPIKTQFVMSGT  317 (323)
Q Consensus       261 EtRMGKGKGkId~WVArVK~GqIIFEI~GVs~~~AkeALk~Aa~KLPiKtkIV~ke~  317 (323)
                      |+|||+|||+|+||||+|++|+||||++|++++.|++||++|++|||++|+||.+++
T Consensus        81 e~RMG~GKG~~~~wva~Vk~G~ilfEi~gv~~~~A~eAlr~A~~KLP~~~kiv~~~~  137 (142)
T 2zjr_J           81 ETRMGKGKGAVEYWVSVVKPGRVMFEVAGVTEEQAKEAFRLAGHKLPIQTKMVKREV  137 (142)
T ss_dssp             SCCCSSSCCTTSEEBCCBCTTEEEECCCSSCSTTTTTHHHHHHHTCSSCEEEECSCC
T ss_pred             cccccccCCCCCEEEEEECCCCEEEEEeCCCHHHHHHHHHHHHhhCCCcEEEEEecc
Confidence            999999999999999999999999999999999999999999999999999998864

>3bbo_O Ribosomal protein L16; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2

Probab=100.00  E-value=6.4e-53  Score=359.08  Aligned_cols=134  Identities=77%  Similarity=1.295  Sum_probs=132.1

Q ss_pred             hcCCCCCCCCCCCCCCCCCCCCCCceeEeeceEEEEecCceecHHHHHHHHHHHHhhhccCceEEEEeCCCCceecCCcc
Q 045554          182 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGKIWVRIFPDKPVTARPAE  261 (323)
Q Consensus       182 ML~PKktKyrK~~KGRikG~s~~g~~L~fG~yGLkAlE~GrITa~QLEAAR~aInR~LKK~gklWIRVfP~~PVTKKPaE  261 (323)
                      ||+||+|||||+||||++|.+.++++|.||+|||+++|+++||++||||||++|+|+|+++|++|||+|||+|||+||+|
T Consensus         1 ml~Pkr~k~rK~~kgr~~g~~~~g~~l~fG~~gL~a~e~~~it~~qiEaaR~ai~R~lk~~~k~wirv~P~~pvt~k~~e   80 (135)
T 3bbo_O            1 MLSPKRTRFRKQHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAE   80 (135)
T ss_dssp             CCCCCCCCCCCCCCCCCCCTTSCCCCCCSSSEEEEESSCCCCCHHHHHHHHHHHHHTTCSSSCCCCCCCCCSCCCCCCSS
T ss_pred             CCCCCcCccccCcCCCCCCccCCCCEEeeceEEEEECcCCccCHHHHHHHHHHHHHHhhhCcEEEEEeCCCcccEecccc
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCceEEEEEEcCCCEEEEEecCCHHHHHHHHHHhhccCCCcEEEEEc
Q 045554          262 TRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAASKMPIKTQFVMS  315 (323)
Q Consensus       262 tRMGKGKGkId~WVArVK~GqIIFEI~GVs~~~AkeALk~Aa~KLPiKtkIV~k  315 (323)
                      +|||+|||+|+||||+|++|+||||++|++++.|++||++|++|||++|+||.+
T Consensus        81 ~RMG~GKG~~~~wva~Vk~G~ilfEi~gv~~~~A~eAlr~a~~KLP~~~kiv~~  134 (135)
T 3bbo_O           81 TRMGSGKGSPEYWVAVVKPGRILYEISGVAENIARRAVAIAASKMPIRTQFIIS  134 (135)
T ss_dssp             CCSSCCCSCSSCCCCCCCTTCEEEEECSSCTTHHHHHHHHHHHHCSSCEEEECC
T ss_pred             ccccccCCCceEEEEEECCCCEEEEEecCCHHHHHHHHHHHHhhCCCcEEEEec
Confidence            999999999999999999999999999999999999999999999999999964

>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I

Probab=100.00  E-value=5.4e-44  Score=297.95  Aligned_cols=115  Identities=25%  Similarity=0.414  Sum_probs=111.4

Q ss_pred             CCCCCCCCCceeEeeceEEEEecCceecHHHHHHHHHHHHhhh--ccCceEEEEeCCCCceecCCcccccCCCCCCceEE
Q 045554          197 RMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNV--KRGGKIWVRIFPDKPVTARPAETRMGSGKGSHAYW  274 (323)
Q Consensus       197 RikG~s~~g~~L~fG~yGLkAlE~GrITa~QLEAAR~aInR~L--KK~gklWIRVfP~~PVTKKPaEtRMGKGKGkId~W  274 (323)
                      +++|.+.++++|.||+|||+++|+++||++||||||++|+|+|  +++|++|||+|||+|||+||+|+|||+|||+|++|
T Consensus         1 ~~~g~~~~g~~l~fG~~gL~a~e~~~it~~qiEaaR~ai~r~l~~k~~~~~wirv~P~~pvt~k~~e~RMG~GKG~~~~w   80 (118)
T 2ftc_I            1 DIRGPSTEATEFTEGNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFAIWRVPAPFKPITRKSVGHRMGGGKGAIDHY   80 (118)
T ss_pred             CccccccCCCeEeeeeEEEEECcCCccCHHHHHHHHHHHHheeeccCCeEEEEEECCCcccCcCchhcccccCCCCccEE
Confidence            3578899999999999999999999999999999999999999  67899999999999999999999999999999999


Q ss_pred             EEEEcCCCEEEEEec-CCHHHHHHHHHHhhccCCCcEE
Q 045554          275 AAVVTPGKIIFEMSG-VPENIARKAISIAASKMPIKTQ  311 (323)
Q Consensus       275 VArVK~GqIIFEI~G-Vs~~~AkeALk~Aa~KLPiKtk  311 (323)
                      ||+|++|+||||++| ++++.|++||++|++|||++|+
T Consensus        81 va~Vk~G~ilfEi~g~~~~~~a~eAlr~a~~KlP~~~~  118 (118)
T 2ftc_I           81 VTPVKAGRLVVEMGGRCEFEEVQGFLDQVAHKLPFAAK  118 (118)
T ss_pred             EEEECCCCEEEEEeccCCHHHHHHHHHHHHhhCCCCCC
Confidence            999999999999999 9999999999999999999984

>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1jj2_H 1k73_J* 1k8a_J* 1k9m_J* 1kc8_J* 1kd1_J* 1kqs_H* 1m1k_J* 1m90_J* 1n8r_J* 1nji_J* 1q7y_J* 1q81_J* 1q82_J* 1q86_J* 1qvf_H 1qvg_H 1w2b_H 3cxc_H* 1giy_P ...

Probab=100.00  E-value=2.3e-36  Score=263.50  Aligned_cols=103  Identities=21%  Similarity=0.110  Sum_probs=99.5

Q ss_pred             eEEEEecCceecHHHHHHHHHHHHhhhccC-c----eEEEEeCCCCceecCCcccccCCCCCCceEEEEEEcCCCEEEEE
Q 045554          213 YALQALEPAWITARQIEAGRRAMVRNVKRG-G----KIWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEM  287 (323)
Q Consensus       213 yGLkAlE~GrITa~QLEAAR~aInR~LKK~-g----klWIRVfP~~PVTKKPaEtRMGKGKGkId~WVArVK~GqIIFEI  287 (323)
                      .||+++|+++||++||||||+++||+|+|. |    ++|||+|||+|||+|| |+|||+|||++++|||+|++|+||||+
T Consensus        46 ~~L~a~E~~~Its~qIEAaRia~nR~lkr~~Gk~~fklwIRifP~~~it~kp-etrMg~gkG~p~~wvArVk~G~ilfei  124 (157)
T 1ffk_F           46 VENVVEKPVQIRHNALEAARNAANRFVQNSGAAANYKFRIRKFPFHVIREQD-GDGMRAPFGKSVGTAARSHGANHDFIA  124 (157)
T ss_pred             EEEEECccccCCHHHHHHHHHHHHHHHHhhcCCcccEEEEEECCCeeeEecc-cccccCCCCCccEEEEEEcCCCEEEEE
Confidence            399999999999999999999999999986 5    8999999999999999 999999999999999999999999999


Q ss_pred             ecCCHHHHHHHHHHhhccCCCcEEEEEcC
Q 045554          288 SGVPENIARKAISIAASKMPIKTQFVMSG  316 (323)
Q Consensus       288 ~GVs~~~AkeALk~Aa~KLPiKtkIV~ke  316 (323)
                      .|++++.|+|||++|++|||++|+||..+
T Consensus       125 ~gv~~~~A~eAlr~A~~KlP~ktkiv~~~  153 (157)
T 1ffk_F          125 WVNPDPAVEFAWRRAYMKVTPTVNIDSSP  153 (157)
T ss_pred             eccCHHHHHHHHHHHHhhCCCcEEEEEec
Confidence            99999999999999999999999999754

>2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Homo sapiens} SCOP: d.41.4.1

Probab=100.00  E-value=3.7e-35  Score=254.68  Aligned_cols=104  Identities=21%  Similarity=0.236  Sum_probs=80.1

Q ss_pred             eEEEEecCceecHHHHHHHHHHHHhhhccC-c----eEEEEeCCCCce------ecCCcc---cccCCCCCCceEEEEEE
Q 045554          213 YALQALEPAWITARQIEAGRRAMVRNVKRG-G----KIWVRIFPDKPV------TARPAE---TRMGSGKGSHAYWAAVV  278 (323)
Q Consensus       213 yGLkAlE~GrITa~QLEAAR~aInR~LKK~-g----klWIRVfP~~PV------TKKPaE---tRMGKGKGkId~WVArV  278 (323)
                      .||+++|+++||++||||||+++||+|+|. |    ++|||+|||+|+      |+||++   +|||+|||+|++|||+|
T Consensus        19 ~~L~a~E~~~Its~qIEAaRia~~R~lkr~~Gk~~~~iwIRifP~~~ir~nkmlT~kgadRlq~gMg~gkG~p~~wvArV   98 (151)
T 2pa2_A           19 GHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARV   98 (151)
T ss_dssp             EEEEECSCEEEEHHHHHHHHHHHHHHHHHHHCTTSEEEEECCSCC-----------------------------CCEEEE
T ss_pred             EEEEECccccCCHHHHHHHHHHHHHHHhhhcCCcCcEEEEEECCCeeEeecccccccchhhhhcccccCCCCccEEEEEE
Confidence            489999999999999999999999999984 4    999999999999      999999   99999999999999999


Q ss_pred             cCCCEEEEEec--CCHHHHHHHHHHhhccCCCcEEEEEcC
Q 045554          279 TPGKIIFEMSG--VPENIARKAISIAASKMPIKTQFVMSG  316 (323)
Q Consensus       279 K~GqIIFEI~G--Vs~~~AkeALk~Aa~KLPiKtkIV~ke  316 (323)
                      ++|+||||+.+  ++++.|+|||++|++|||++|+||..+
T Consensus        99 k~G~ilfei~~~~v~~~~A~eAlr~A~~KlP~ktkiv~~~  138 (151)
T 2pa2_A           99 HIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISK  138 (151)
T ss_dssp             CTTBEEEEEEECGGGHHHHHHHHHHHGGGSSSCEEEEEES
T ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEEec
Confidence            99999999999  999999999999999999999999763

>1vq8_H 50S ribosomal protein L10E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1vq4_H* 1vq5_H* 1vq6_H* 1vq7_H* 1s72_H* 1vq9_H* 1vqk_H* 1vql_H* 1vqm_H* 1vqn_H* 1vqo_H* 1vqp_H* 2otj_H* 2otl_H* 2qa4_H* 2qex_H* 1yhq_H* 1yi2_H* 1yij_H* 1yit_H* ...

Probab=100.00  E-value=2.4e-34  Score=253.72  Aligned_cols=104  Identities=22%  Similarity=0.220  Sum_probs=94.0

Q ss_pred             eEEEEecCceecHHHHHHHHHHHHhhhcc-Cce-----EEEEeCCCCce------ecCCcc---cccCCCCCCceEEEEE
Q 045554          213 YALQALEPAWITARQIEAGRRAMVRNVKR-GGK-----IWVRIFPDKPV------TARPAE---TRMGSGKGSHAYWAAV  277 (323)
Q Consensus       213 yGLkAlE~GrITa~QLEAAR~aInR~LKK-~gk-----lWIRVfP~~PV------TKKPaE---tRMGKGKGkId~WVAr  277 (323)
                      .||+++|+++||++||||||++++|+|+| .|+     +|||+|||+||      |+||+|   +|||+|||++++|||+
T Consensus        47 ~~L~a~E~~~Its~qIEAaRia~~R~lkk~~Gk~~~f~iwIRifP~~~ir~nkm~T~kgAdRlq~rMg~gkG~p~~wvAr  126 (171)
T 1vq8_H           47 ISLIVEETVQLRHGSLEASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKQATGAGADRVSDGMRAAFGKIVGTAAR  126 (171)
T ss_dssp             EEEEESSCEEEEHHHHHHHHHHHHHHHHHHHCTTCSCEEEECCCCCEEEEECC-----------CCSTTCCCEEEEEEEE
T ss_pred             EEEEECcccccCHHHHHHHHHHHHHHhHHhcCCCCCcEEEEEEcCCeeEeccccccccchhhhhccccccCCCCcEEEEE
Confidence            39999999999999999999999999997 556     99999999998      899999   9999999999999999


Q ss_pred             EcCCCEEEEEec--CCHHHHHHHHHHhhccCCCcEEEEEcC
Q 045554          278 VTPGKIIFEMSG--VPENIARKAISIAASKMPIKTQFVMSG  316 (323)
Q Consensus       278 VK~GqIIFEI~G--Vs~~~AkeALk~Aa~KLPiKtkIV~ke  316 (323)
                      |++|+||||+.+  ++++.|+|||++|++|||++|+||..+
T Consensus       127 Vk~G~ilfei~~~~v~~~~A~eAlr~A~~KLP~ktkiv~~~  167 (171)
T 1vq8_H          127 VQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRIDSSP  167 (171)
T ss_dssp             ECTTCEEEEEEECTTTHHHHHHHHHHHGGGSSSCEEEEECS
T ss_pred             ECCCCEEEEEECcCCCHHHHHHHHHHHHhhCCCcEEEEEec
Confidence            999999999999  999999999999999999999999754

>2zkr_h 60S ribosomal protein L10; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=100.00  E-value=1.2e-33  Score=256.33  Aligned_cols=104  Identities=20%  Similarity=0.194  Sum_probs=99.8

Q ss_pred             eEEEEecCceecHHHHHHHHHHHHhhhccC-----ceEEEEeCCCCcee------cCCcc---cccCCCCCCceEEEEEE
Q 045554          213 YALQALEPAWITARQIEAGRRAMVRNVKRG-----GKIWVRIFPDKPVT------ARPAE---TRMGSGKGSHAYWAAVV  278 (323)
Q Consensus       213 yGLkAlE~GrITa~QLEAAR~aInR~LKK~-----gklWIRVfP~~PVT------KKPaE---tRMGKGKGkId~WVArV  278 (323)
                      +||+|+|+++||++||||||+++||+|+|.     |++|||+|||+|||      +||++   +|||+|||+|++|||+|
T Consensus        50 ~gL~a~E~~~Its~qIEAARia~nR~lkr~~Gk~~fklwIRifP~~~it~nkmls~kgAdRlqtgMg~gkGkp~~wvArV  129 (214)
T 2zkr_h           50 GHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVAKV  129 (214)
T ss_dssp             EEEEESSCEEEEHHHHHHHHHHHHHHHHHHHCTTCCEEEECCCCCEEEEECTTTCCSSCSSTTSSSTTCCCEEEEEEEEE
T ss_pred             EEEEECcccccCHHHHHHHHHHHHHHHhhccCCcCcEEEEEECCCceeecccccccCCchhhcccccCCCCCCcEEEEEE
Confidence            699999999999999999999999999983     48999999999999      88998   99999999999999999


Q ss_pred             cCCCEEEEEec--CCHHHHHHHHHHhhccCCCcEEEEEcC
Q 045554          279 TPGKIIFEMSG--VPENIARKAISIAASKMPIKTQFVMSG  316 (323)
Q Consensus       279 K~GqIIFEI~G--Vs~~~AkeALk~Aa~KLPiKtkIV~ke  316 (323)
                      ++|+||||+.+  ++++.|+|||++|++|||++|+||..+
T Consensus       130 kpGqilfEi~~~~v~~~~A~eALr~A~~KLP~ktkiv~~~  169 (214)
T 2zkr_h          130 HIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISK  169 (214)
T ss_dssp             CTTCEEEEEEECSTTHHHHHHHHHHHHHTSSSCEEEEECC
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHhhCCCcEEEEEec
Confidence            99999999999  999999999999999999999999765

>3j21_N 50S ribosomal protein L10E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.97  E-value=1.4e-32  Score=244.28  Aligned_cols=105  Identities=22%  Similarity=0.265  Sum_probs=98.3

Q ss_pred             eEEEEecCceecHHHHHHHHHHHHhhhcc-Cc----eEEEEeCCCCceecCC---------cccccCCCCCCceEEEEEE
Q 045554          213 YALQALEPAWITARQIEAGRRAMVRNVKR-GG----KIWVRIFPDKPVTARP---------AETRMGSGKGSHAYWAAVV  278 (323)
Q Consensus       213 yGLkAlE~GrITa~QLEAAR~aInR~LKK-~g----klWIRVfP~~PVTKKP---------aEtRMGKGKGkId~WVArV  278 (323)
                      ..|+++|.+|||++||||||+++||+|+| .|    ++|||+|||+|+|+|+         +++|||+|||++++|||+|
T Consensus        47 ~~L~a~E~~qIss~qiEAARia~nRyl~r~~Gk~~fhl~IRifP~~vir~nkmls~agAdRl~~gM~~~kGkp~gwvArV  126 (181)
T 3j21_N           47 VSLHTAEPVQIRQNALEAARQQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARL  126 (181)
T ss_dssp             EEEEECSCEEEEHHHHHHHHHHHHHHHHHHHCTTSCEEECCCCCCCCCCCCCCCCCCTTCCSCCSSSSCSCCCCCCEEEE
T ss_pred             EEEEEcccccccHHHHHHHHHHHHHHHHHhcCCccceEEEEECCCceeeecccccccchhhhccccccccCCcceEEEEE
Confidence            48999999999999999999999999998 44    5999999999999988         3789999999999999999


Q ss_pred             cCCCEEEEEec--CCHHHHHHHHHHhhccCCCcE--EEEEcCC
Q 045554          279 TPGKIIFEMSG--VPENIARKAISIAASKMPIKT--QFVMSGT  317 (323)
Q Consensus       279 K~GqIIFEI~G--Vs~~~AkeALk~Aa~KLPiKt--kIV~ke~  317 (323)
                      ++|++|||+.+  ++++.|+|||++|++|||++|  +|+..+.
T Consensus       127 k~Gqilfei~~~~~~~~~A~eAlr~A~~KlP~~t~~kiv~~~~  169 (181)
T 3j21_N          127 KKDQKILSIRVNRQHLKFAIEGARRAAMKFPCKCYYRIYDKEG  169 (181)
T ss_dssp             CSSEEEEEEEECSTTHHHHHHHHHHHHHSSSSCCSSCEEECCC
T ss_pred             cCCCEEEEEEecCCCHHHHHHHHHHHhccCCCCeeeEEEEecc
Confidence            99999999999  679999999999999999999  9997754

>4a17_H RPL10, 60S ribosomal protein L10; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_H 4a1c_H 4a1e_H

Probab=99.97  E-value=6.5e-32  Score=245.21  Aligned_cols=104  Identities=25%  Similarity=0.244  Sum_probs=96.9

Q ss_pred             eEEEEecCceecHHHHHHHHHHHHhhhcc-Cce----EEEEeCCCCceecCCc---------ccccCCCCCCceEEEEEE
Q 045554          213 YALQALEPAWITARQIEAGRRAMVRNVKR-GGK----IWVRIFPDKPVTARPA---------ETRMGSGKGSHAYWAAVV  278 (323)
Q Consensus       213 yGLkAlE~GrITa~QLEAAR~aInR~LKK-~gk----lWIRVfP~~PVTKKPa---------EtRMGKGKGkId~WVArV  278 (323)
                      ..|+++|.++||++||||||+++||+|+| .|+    +|||+|||+|+|++++         ++|||+|||++++|||+|
T Consensus        50 ~~L~a~E~~qIss~qIEAARia~nRyl~r~~GK~~fhl~IRifP~~vir~nkmls~agAdRl~tgM~~akGkp~gwvArV  129 (215)
T 4a17_H           50 VHIVSDEKEQITSEALEAARIAANKNLIKFISKDAFHLRCRVHPWHVLRINKMLSCAGADRLQSGMRGAFGKALGKAARV  129 (215)
T ss_dssp             EEEEECSCEEEEHHHHHHHHHHHHHHHHHHSCGGGCEEEECCCCCEEEEECC-----------CTTSCCCCEEEEEEEEE
T ss_pred             EEEEECccccCcHHHHHHHHHHHHHHHHHhcCCccceEEEEECCCceeeecccccccchhhhhccccCCCCCCCeEEEEE
Confidence            47999999999999999999999999998 555    9999999999999997         899999999999999999


Q ss_pred             cCCCEEEEEec--CCHHHHHHHHHHhhccCCCcEEEEEcC
Q 045554          279 TPGKIIFEMSG--VPENIARKAISIAASKMPIKTQFVMSG  316 (323)
Q Consensus       279 K~GqIIFEI~G--Vs~~~AkeALk~Aa~KLPiKtkIV~ke  316 (323)
                      ++|+||||+.+  ++++.|+|||++|++|||++|+|+..+
T Consensus       130 k~Gqilfei~g~~~~~~~A~eALr~A~~KlP~~tkiv~~~  169 (215)
T 4a17_H          130 DIGSILFSVRVKEPHVKYAIDALTRAKAKFPGRQKVVTSQ  169 (215)
T ss_dssp             CTTCEEEEEEECGGGHHHHHHHHHHHGGGSSSCEEEEEES
T ss_pred             cCCCEEEEEEecCCCHHHHHHHHHHHhhhCCCceEEEEcc
Confidence            99999999999  569999999999999999999999764

>3j0l_J Ribosomal protein L10; mammalia, translation, elongation cycle, tRNA, ribosome; 9.80A {Oryctolagus cuniculus} PDB: 3j0q_J 3izc_I 3izs_I 3o58_J 3o5h_J 3u5e_I 3u5i_I 4b6a_I

Probab=99.97  E-value=8.4e-32  Score=245.02  Aligned_cols=104  Identities=21%  Similarity=0.292  Sum_probs=96.7

Q ss_pred             eEEEEecCceecHHHHHHHHHHHHhhhcc-Cce----EEEEeCCCCceecCCc---------ccccCCCCCCceEEEEEE
Q 045554          213 YALQALEPAWITARQIEAGRRAMVRNVKR-GGK----IWVRIFPDKPVTARPA---------ETRMGSGKGSHAYWAAVV  278 (323)
Q Consensus       213 yGLkAlE~GrITa~QLEAAR~aInR~LKK-~gk----lWIRVfP~~PVTKKPa---------EtRMGKGKGkId~WVArV  278 (323)
                      ..|+++|.++||++||||||+++||+|+| .|+    +|||+|||+|+|+|++         ++|||+|||++++|||+|
T Consensus        48 ~~L~a~E~~qIss~qIEAARia~nRyl~r~~GK~~fhlwIRifP~~vir~nkmls~AgAdRl~tgMr~akGkp~gwvArV  127 (219)
T 3j0l_J           48 VHLVSNELEQLSSEALEAARICANKYMTTVSGRDAFHLRVRVHPFHVLRINKMLSCAGADRLQQGMRGAWGKPHGLAARV  127 (219)
T ss_dssp             EEEECCSCEEECHHHHHHHHHHHHHHHHHTTCTTTCCBCCCSCCCCEEEECC-----------CCSSCCCCEEEEECEEE
T ss_pred             EEEEECccccccHHHHHHHHHHHHHHHHHhcCCccceEEEEECCCceeeecccccccchhhhhccccCCCCCCCeEEEEE
Confidence            48999999999999999999999999998 555    9999999999999997         899999999999999999


Q ss_pred             cCCCEEEEEec--CCHHHHHHHHHHhhccCCCcEEEEEcC
Q 045554          279 TPGKIIFEMSG--VPENIARKAISIAASKMPIKTQFVMSG  316 (323)
Q Consensus       279 K~GqIIFEI~G--Vs~~~AkeALk~Aa~KLPiKtkIV~ke  316 (323)
                      ++|+||||+.+  ++++.|+|||++|++|||++|+|+..+
T Consensus       128 k~Gqilfei~g~~~~~~~A~eALr~A~~KLP~~tkiv~~~  167 (219)
T 3j0l_J          128 DIGQIIFSVRTKDSNKDVVVEGLRRARYKFPGQQKIILSK  167 (219)
T ss_dssp             CTTCEESCCCCCGGGHHHHHHHHHHHHHSSSCCCCCEECC
T ss_pred             cCCCEEEEEEecCcCHHHHHHHHHHHhhhCCCCeEEEEec
Confidence            99999999999  567999999999999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	323
d2gyck1	131	d.41.4.2 (K:3-133) Ribosomal protein L16p {Escheri	7e-59
d2j01q1	136	d.41.4.2 (Q:6-141) Ribosomal protein L16p {Thermus	1e-58
d1jj2h_	167	d.41.4.1 (H:) Ribosomal protein L10e {Archaeon Hal	2e-32
d2pa2a1	137	d.41.4.1 (A:40-176) Ribosomal protein L10e {Human	3e-31
d1vqoh1	163	d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeo	2e-27

>d2gyck1 d.41.4.2 (K:3-133) Ribosomal protein L16p {Escherichia coli [TaxId: 562]} Length = 131

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Ribosomal protein L16p/L10e
family: Ribosomal protein L16p
domain: Ribosomal protein L16p
species: Escherichia coli [TaxId: 562]

 Score =  183 bits (466), Expect = 7e-59
 Identities = 73/129 (56%), Positives = 95/129 (73%), Gaps = 1/129 (0%)

Query: 185 PKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 244
           PKR KF K H+GR  G A +G  + FG + L+A+    +TARQIEA RRAM R VKR GK
Sbjct: 2   PKRTKFRKMHKGRNRGLA-QGTDVSFGSFGLKAVGRGRLTARQIEAARRAMTRAVKRQGK 60

Query: 245 IWVRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAAS 304
           IW+R+FPDKP+T +P   RMG GKG+  YW A++ PGK+++EM GVPE +AR+A  +AA+
Sbjct: 61  IWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGKVLYEMDGVPEELAREAFKLAAA 120

Query: 305 KMPIKTQFV 313
           K+PIKT FV
Sbjct: 121 KLPIKTTFV 129

>d2j01q1 d.41.4.2 (Q:6-141) Ribosomal protein L16p {Thermus thermophilus [TaxId: 274]} Length = 136

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Ribosomal protein L16p/L10e
family: Ribosomal protein L16p
domain: Ribosomal protein L16p
species: Thermus thermophilus [TaxId: 274]

 Score =  183 bits (465), Expect = 1e-58
 Identities = 72/127 (56%), Positives = 94/127 (74%)

Query: 187 RIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGKIW 246
           R+K+ KQ RGR+ G    G+ + FG Y L ALEPAWITA+QIEA R AMVR+ +RGGKI+
Sbjct: 1   RMKYRKQQRGRLKGATKGGDYVAFGDYGLVALEPAWITAQQIEAARVAMVRHFRRGGKIF 60

Query: 247 VRIFPDKPVTARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAASKM 306
           +RIFPDKP T +P E RMG GKG+   + AVV PG+++FE++GV E  A +A+ IA  K+
Sbjct: 61  IRIFPDKPYTKKPLEVRMGKGKGNVEGYVAVVKPGRVMFEVAGVTEEQAMEALRIAGHKL 120

Query: 307 PIKTQFV 313
           PIKT+ V
Sbjct: 121 PIKTKIV 127

>d1jj2h_ d.41.4.1 (H:) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 167

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Ribosomal protein L16p/L10e
family: Ribosomal protein L10e
domain: Ribosomal protein L10e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  116 bits (292), Expect = 2e-32
 Identities = 30/130 (23%), Positives = 39/130 (30%), Gaps = 18/130 (13%)

Query: 204 RGNLICFGRYALQ----ALEPAWITARQIEAGRRAMVRNVKR-----GGKIWVRIFPDKP 254
            GN      Y  Q      +P  I    +EA R A  R V+        K  +R FP   
Sbjct: 33  MGNNGAGPTYPAQVELVVEKPVQIRHNALEAARVAANRYVQNSGAAANYKFRIRKFPFHV 92

Query: 255 VT---------ARPAETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAASK 305
           +          A  A   M +  G     AA V     IF     P+    +A   A  K
Sbjct: 93  IRENKAAAAAAAAAAADGMRAPFGKPVGTAARVHGANHIFIAWVNPDPNVEEAWRRAKMK 152

Query: 306 MPIKTQFVMS 315
           +        S
Sbjct: 153 VTPTINIDSS 162

>d2pa2a1 d.41.4.1 (A:40-176) Ribosomal protein L10e {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Ribosomal protein L16p/L10e
family: Ribosomal protein L10e
domain: Ribosomal protein L10e
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (281), Expect = 3e-31
 Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 16/117 (13%)

Query: 215 LQALEPAWITARQIEAGRRAMVRNVK-----RGGKIWVRIFPDKPVTARPAETRMGS--- 266
           + + E   +++  +EA R    + +       G  I VR+ P   +      +  G+   
Sbjct: 13  MVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRL 72

Query: 267 ------GKGSHAYWAAVVTPGKIIFEMSGVPEN--IARKAISIAASKMPIKTQFVMS 315
                   G      A V  G++I  +    +N     +A+  A  K P + +  +S
Sbjct: 73  QTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHIS 129

>d1vqoh1 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 163

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Ribosomal protein L16p/L10e
family: Ribosomal protein L10e
domain: Ribosomal protein L10e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  103 bits (258), Expect = 2e-27
 Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 17/115 (14%)

Query: 213 YALQALEPAWITARQIEAGRRAMVRNVKRGG------KIWVRIFPDKPVTARPA------ 260
            +L   E   +    +EA R +  R++ +        K+ +R FP + +           
Sbjct: 47  ISLIVEETVQLRHGSLEASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKQATGAGA 106

Query: 261 ---ETRMGSGKGSHAYWAAVVTPGKIIFEMSGVPEN--IARKAISIAASKMPIKT 310
                 M +  G     AA V  G+ +F      E+    ++A   A +K+    
Sbjct: 107 DRVSDGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSC 161

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	323
d2j01q1	136	Ribosomal protein L16p {Thermus thermophilus [TaxI	100.0
d2gyck1	131	Ribosomal protein L16p {Escherichia coli [TaxId: 5	100.0
d1jj2h_	167	Ribosomal protein L10e {Archaeon Haloarcula marism	100.0
d1vqoh1	163	Ribosomal protein L10e {Archaeon Haloarcula marism	100.0
d2pa2a1	137	Ribosomal protein L10e {Human (Homo sapiens) [TaxI	100.0

>d2j01q1 d.41.4.2 (Q:6-141) Ribosomal protein L16p {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Ribosomal protein L16p/L10e
family: Ribosomal protein L16p
domain: Ribosomal protein L16p
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=8.2e-51  Score=344.83  Aligned_cols=135  Identities=53%  Similarity=0.926  Sum_probs=132.5

Q ss_pred             CCCCCCCCCCCCCCCCCCCceeEeeceEEEEecCceecHHHHHHHHHHHHhhhccCceEEEEeCCCCceecCCcccccCC
Q 045554          187 RIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGKIWVRIFPDKPVTARPAETRMGS  266 (323)
Q Consensus       187 ktKyrK~~KGRikG~s~~g~~L~fG~yGLkAlE~GrITa~QLEAAR~aInR~LKK~gklWIRVfP~~PVTKKPaEtRMGK  266 (323)
                      ||||||+||||++|.+.++++|.||+|||+|+|+|+||++||||||++|+|+|++++++|||+|||+|||+||+|+|||+
T Consensus         1 rtKyrK~~kgr~~g~~~~~~~l~fG~yGL~a~~~g~it~~qiEa~R~~i~r~lk~~gk~wiri~P~~pvTkKp~e~RMGk   80 (136)
T d2j01q1           1 RMKYRKQQRGRLKGATKGGDYVAFGDYGLVALEPAWITAQQIEAARVAMVRHFRRGGKIFIRIFPDKPYTKKPLEVRMGK   80 (136)
T ss_dssp             CCSSCCCCCCCCCSCTTSCCCCCSSSSEEEESSCEEEEHHHHHHHHHHHHHHTSSCCEEEECCCCCEEECCCCSSCCSSS
T ss_pred             CCCcCCCCCCCCCCcCCCCCEeecccceeeeeEccEEcHHHHHHHHHHHHhhcccCCeEEEEecCCeEEEeecccccccC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceEEEEEEcCCCEEEEEecCCHHHHHHHHHHhhccCCCcEEEEEcCCCCCC
Q 045554          267 GKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAASKMPIKTQFVMSGTSTSK  321 (323)
Q Consensus       267 GKGkId~WVArVK~GqIIFEI~GVs~~~AkeALk~Aa~KLPiKtkIV~ke~~~~~  321 (323)
                      |||+|||||++|++|+||||++|+++++|++||++|++|||++|+||.+++.+..
T Consensus        81 GKG~i~~wv~~Vk~G~ilfEi~gv~~~~a~~al~~a~~KLP~k~k~V~r~~~~~~  135 (136)
T d2j01q1          81 GKGNVEGYVAVVKPGRVMFEVAGVTEEQAMEALRIAGHKLPIKTKIVRRDAYDEA  135 (136)
T ss_dssp             CSCCTTEEEEEECTTCEEEEEESSCHHHHHHHHHHHHHHSSSCEEEECCSCCCSC
T ss_pred             CCCCcceEEEEecCCcEEEEEcCCCHHHHHHHHHHHHhhCCCcEEEEEeCccccc
Confidence            9999999999999999999999999999999999999999999999999988753

>d2gyck1 d.41.4.2 (K:3-133) Ribosomal protein L16p {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Ribosomal protein L16p/L10e
family: Ribosomal protein L16p
domain: Ribosomal protein L16p
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.9e-52  Score=351.88  Aligned_cols=131  Identities=56%  Similarity=1.016  Sum_probs=127.8

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCceeEeeceEEEEecCceecHHHHHHHHHHHHhhhccCceEEEEeCCCCceecCCcccc
Q 045554          184 GPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGKIWVRIFPDKPVTARPAETR  263 (323)
Q Consensus       184 ~PKktKyrK~~KGRikG~s~~g~~L~fG~yGLkAlE~GrITa~QLEAAR~aInR~LKK~gklWIRVfP~~PVTKKPaEtR  263 (323)
                      |||||||||+||||++|.+ +++.|.||+|||+|+|+|+||++||||||++|+|+|++++++|||+|||+|||+||+|+|
T Consensus         1 qPkrtK~rK~~kgr~~g~~-~g~~l~~G~yGL~ale~g~it~~qiEa~R~~i~R~lkr~gk~wirifP~~pvTkKp~e~R   79 (131)
T d2gyck1           1 QPKRTKFRKMHKGRNRGLA-QGTDVSFGSFGLKAVGRGRLTARQIEAARRAMTRAVKRQGKIWIRVFPDKPITEKPLAVR   79 (131)
T ss_dssp             CCCCCCSSCCCCCCSCCCC-CSCCSSCCCCCCEEESCEEEEHHHHHHHHHHHHTTCTTCCCEEECCCCCBCCCBCCSSCS
T ss_pred             CCCCCcccCCcCCCCcccC-cCceEeeeeeeeEeccCceecHHHHHHHHHHHHHhhhhCceEEEEecCcEEEEeccccce
Confidence            6999999999999999987 688999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCceEEEEEEcCCCEEEEEecCCHHHHHHHHHHhhccCCCcEEEEEc
Q 045554          264 MGSGKGSHAYWAAVVTPGKIIFEMSGVPENIARKAISIAASKMPIKTQFVMS  315 (323)
Q Consensus       264 MGKGKGkId~WVArVK~GqIIFEI~GVs~~~AkeALk~Aa~KLPiKtkIV~k  315 (323)
                      ||+|||++|||||+|++|+||||++|+++++|++||++|++|||++|+||.+
T Consensus        80 MGkGKG~~~~wva~Vk~G~ilfEi~gv~e~~a~~al~~aa~KLP~k~k~i~k  131 (131)
T d2gyck1          80 MGKGKGNVEYWVALIQPGKVLYEMDGVPEELAREAFKLAAAKLPIKTTFVTK  131 (131)
T ss_dssp             SCCCBCCSCCCEEEECTEEECEEECCCSCCSSHHHHHHHTTTSSSCBCCCCC
T ss_pred             ecCCcCCCceEEEEecCCCEEEEEcCCCHHHHHHHHHHHHhhCCCcEEEEeC
Confidence            9999999999999999999999999999999999999999999999999864

>d1jj2h_ d.41.4.1 (H:) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Ribosomal protein L16p/L10e
family: Ribosomal protein L10e
domain: Ribosomal protein L10e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=2.2e-35  Score=257.16  Aligned_cols=106  Identities=25%  Similarity=0.169  Sum_probs=99.6

Q ss_pred             eEEEEecCceecHHHHHHHHHHHHhhhcc-----CceEEEEeCCCCceecCC---------cccccCCCCCCceEEEEEE
Q 045554          213 YALQALEPAWITARQIEAGRRAMVRNVKR-----GGKIWVRIFPDKPVTARP---------AETRMGSGKGSHAYWAAVV  278 (323)
Q Consensus       213 yGLkAlE~GrITa~QLEAAR~aInR~LKK-----~gklWIRVfP~~PVTKKP---------aEtRMGKGKGkId~WVArV  278 (323)
                      ++|+++|++||+++||||||+++||+|++     +|++|||+|||+|+|+||         +++|||+|||++++|||+|
T Consensus        46 ~~L~a~e~~qi~~~aiEAaR~~~nr~l~~~~g~~~~~~~irvfP~~~ir~kp~~~~agAdr~~~rMg~gkGkp~~~aArV  125 (167)
T d1jj2h_          46 VELVVEKPVQIRHNALEAARVAANRYVQNSGAAANYKFRIRKFPFHVIRENKAAAAAAAAAAADGMRAPFGKPVGTAARV  125 (167)
T ss_dssp             EEEEECSCEEEEHHHHHHHHHHHHTTSTTSCTTCSCEEEECCCCCEEEEECC-----------CCSSSCCCEEEEEEEEE
T ss_pred             EEEEEccceeecHHHHHHHHHHHHHHHHHhccccCCeEEEEecCCccEEecccccccccccccccccCCCCCccEEEEEE
Confidence            39999999999999999999999999976     589999999999999999         6999999999999999999


Q ss_pred             cCCCEEEEEecCCHHHHHHHHHHhhccCCCcEEEEEcCCC
Q 045554          279 TPGKIIFEMSGVPENIARKAISIAASKMPIKTQFVMSGTS  318 (323)
Q Consensus       279 K~GqIIFEI~GVs~~~AkeALk~Aa~KLPiKtkIV~ke~~  318 (323)
                      ++|+||||+++++++.|++||++|++|||++|+|+..++-
T Consensus       126 k~G~ilfei~~~~e~~akeALr~A~~KLP~~~kI~~~p~~  165 (167)
T d1jj2h_         126 HGANHIFIAWVNPDPNVEEAWRRAKMKVTPTINIDSSPAG  165 (167)
T ss_dssp             CTTCEEEEEEESSCCCHHHHHHHHTTSSSSCEEEEECSCC
T ss_pred             cCCCEEEEEecCCHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence            9999999999999999999999999999999999987653

>d1vqoh1 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Ribosomal protein L16p/L10e
family: Ribosomal protein L10e
domain: Ribosomal protein L10e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=2.5e-34  Score=249.60  Aligned_cols=100  Identities=20%  Similarity=0.202  Sum_probs=93.0

Q ss_pred             eEEEEecCceecHHHHHHHHHHHHhhhcc------CceEEEEeCCCCceecCCc---------ccccCCCCCCceEEEEE
Q 045554          213 YALQALEPAWITARQIEAGRRAMVRNVKR------GGKIWVRIFPDKPVTARPA---------ETRMGSGKGSHAYWAAV  277 (323)
Q Consensus       213 yGLkAlE~GrITa~QLEAAR~aInR~LKK------~gklWIRVfP~~PVTKKPa---------EtRMGKGKGkId~WVAr  277 (323)
                      ++|+++|+++|+++||||||++++|+|++      +|++|||+|||+|||+||+         ++|||+|||++++|||+
T Consensus        47 ~~L~a~e~~~i~~~~iEAaR~a~~r~l~k~~G~~~~~~~~irvfP~~~v~~kp~~~~agadrl~~~Mg~gkG~p~~~aAr  126 (163)
T d1vqoh1          47 ISLIVEETVQLRHGSLEASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKQATGAGADRVSDGMRAAFGKIVGTAAR  126 (163)
T ss_dssp             EEEEESSCEEEEHHHHHHHHHHHHHHHHHHHCTTCSCEEEECCCCCEEEEECC-----------CCSTTCCCEEEEEEEE
T ss_pred             EEEEEcccceecHHHHHHHHHHHHhhhhhhcCccccceEEEEecCcceeecChhhhhcccccccccccCCCCCccEEEEE
Confidence            49999999999999999999999999976      3699999999999999996         88999999999999999


Q ss_pred             EcCCCEEEEEecCC--HHHHHHHHHHhhccCCCcEEE
Q 045554          278 VTPGKIIFEMSGVP--ENIARKAISIAASKMPIKTQF  312 (323)
Q Consensus       278 VK~GqIIFEI~GVs--~~~AkeALk~Aa~KLPiKtkI  312 (323)
                      |++|+||||+.+++  .+.|++||++|++|||++|+|
T Consensus       127 Vk~G~ilfei~~~~~~~~~akeALr~A~~KLP~~tkI  163 (163)
T d1vqoh1         127 VQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRI  163 (163)
T ss_dssp             ECTTCEEEEEEECSTTHHHHHHHHHHHGGGSSSCEEE
T ss_pred             ECCCCEEEEEEeccccHHHHHHHHHHHhccCCCceEC
Confidence            99999999999964  588999999999999999987

>d2pa2a1 d.41.4.1 (A:40-176) Ribosomal protein L10e {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Ribosomal protein L16p/L10e
family: Ribosomal protein L10e
domain: Ribosomal protein L10e
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-34  Score=243.95  Aligned_cols=104  Identities=19%  Similarity=0.179  Sum_probs=77.6

Q ss_pred             eEEEEecCceecHHHHHHHHHHHHhhhc-----cCceEEEEeCCCCceecCCcccccC---------CCCCCceEEEEEE
Q 045554          213 YALQALEPAWITARQIEAGRRAMVRNVK-----RGGKIWVRIFPDKPVTARPAETRMG---------SGKGSHAYWAAVV  278 (323)
Q Consensus       213 yGLkAlE~GrITa~QLEAAR~aInR~LK-----K~gklWIRVfP~~PVTKKPaEtRMG---------KGKGkId~WVArV  278 (323)
                      ..|+++|+++|+++||||||++|+|+|+     ++|++|||+|||+|||+||+++|||         +|||++++|||+|
T Consensus        11 ~~L~~~e~~~i~~~~iEAaR~ai~r~l~k~~gk~~~~~~irvfP~~~l~~k~~~~~~Gadr~~~gMrkgkG~p~~waArV   90 (137)
T d2pa2a1          11 GHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARV   90 (137)
T ss_dssp             EEEEECSCEEEEHHHHHHHHHHHHHHHHHHHCTTSEEEEECCSCC-----------------------------CCEEEE
T ss_pred             EEEEEcCcccccHHHHHHHHHHHHHHHHHhhccCCcEEEEEEcCCcceeecchhccccccccccccccCcCCccEEEEEe
Confidence            4799999999999999999999999994     4789999999999999999988777         8999999999999


Q ss_pred             cCCCEEEEEecC--CHHHHHHHHHHhhccCCCcEEEEEcC
Q 045554          279 TPGKIIFEMSGV--PENIARKAISIAASKMPIKTQFVMSG  316 (323)
Q Consensus       279 K~GqIIFEI~GV--s~~~AkeALk~Aa~KLPiKtkIV~ke  316 (323)
                      ++|+||||++++  +.+.|++||++|++|||++|+|+...
T Consensus        91 k~G~ilfEi~g~~~~~~~Ak~ALr~Aa~KLP~~tkIvv~k  130 (137)
T d2pa2a1          91 HIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISK  130 (137)
T ss_dssp             CTTBEEEEEEECGGGHHHHHHHHHHHGGGSSSCEEEEEES
T ss_pred             cCCcEEEEEeecccCHHHHHHHHHHHhccCCCcEEEEEec
Confidence            999999999985  55889999999999999999987554