Citrus Sinensis ID: 045566

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110--
Protein Sequence
VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ
Secondary Structure (PSIPRED)
cEEEEEcccccEEEEEcccccEEEEEccccccEEEEccccccEEEEEEEccccEEEEEEccccEEEEEcccccEEEEEccccEEEEEcccccEEEEEcccccEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEccccccEEEEEccccEEEEcccccEEEEEccccEEEEEEccccc
Coil and Loop (DISEMBL)
vlcstwkddgttvfsggcdkqvkmwpllsggqpvtvamhdapikevawipemnllatgswdktlkywdtrqpnpvhtqqlpdrcyaltvryplmvvgtADRNLVVFNLQNPQ
Flexible Loop (DISEMBL)
vlcstwkddgttvfsggcdkqvKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQpnpvhtqqlpdRCYALTVRYPLMVVGTADRNLVVFNLQNPQ
Low Complexity Region (SEG)
VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ
Disordered region (IsUnstruct)
****TWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNL****
Disordered Region (DISOPRED)
VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP*
Disordered Region (DISEMBL)
VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ
Disordered Region (DISPRO)
VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQ***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	112	2.2.26 [Sep-21-2011]
Q38942	349	Rae1-like protein At1g806	yes	no	1.0	0.320	0.866	1e-55
Q5FVA9	368	mRNA export factor OS=Xen	yes	no	0.973	0.296	0.544	1e-29
Q5RF99	368	mRNA export factor OS=Pon	yes	no	0.973	0.296	0.526	6e-29
P78406	368	mRNA export factor OS=Hom	yes	no	0.973	0.296	0.526	6e-29
Q5E9A4	368	mRNA export factor OS=Bos	yes	no	0.973	0.296	0.535	1e-28
Q8C570	368	mRNA export factor OS=Mus	yes	no	0.973	0.296	0.526	1e-28
A5GFN6	368	mRNA export factor OS=Sus	yes	no	0.973	0.296	0.526	1e-28
Q3SWS8	368	mRNA export factor OS=Rat	yes	no	0.973	0.296	0.526	1e-28
Q7ZWF0	368	mRNA export factor OS=Dan	yes	no	0.973	0.296	0.508	2e-28
Q4R6D2	368	mRNA export factor OS=Mac	N/A	no	0.973	0.296	0.517	3e-27

>sp|Q38942|RAE1L_ARATH Rae1-like protein At1g80670 OS=Arabidopsis thaliana GN=At1g80670 PE=2 SV=2

 Score =  214 bits (546), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 97/112 (86%), Positives = 104/112 (92%)

Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
           VLCS WKDDGTTVFSGGCDKQ KMWPLLSGGQPVTVAMH+ PI  +AWIP MNLLATGSW
Sbjct: 75  VLCSAWKDDGTTVFSGGCDKQAKMWPLLSGGQPVTVAMHEGPIAAMAWIPGMNLLATGSW 134

Query: 61  DKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112
           DKTLKYWDTRQ NPVHTQQLPD+CY L+V++PLMVVGTADRNL+VFNLQNPQ
Sbjct: 135 DKTLKYWDTRQQNPVHTQQLPDKCYTLSVKHPLMVVGTADRNLIVFNLQNPQ 186

Arabidopsis thaliana (taxid: 3702)

>sp|Q5FVA9|RAE1L_XENTR mRNA export factor OS=Xenopus tropicalis GN=rae1 PE=2 SV=1

 Score =  128 bits (322), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 61/112 (54%), Positives = 77/112 (68%), Gaps = 3/112 (2%)

Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI--PEMNLLATG 58
           VL   W DDG+ VF+  CDK  KMW L S  Q + +A HDAPIK V W+  P  + + TG
Sbjct: 89  VLDVCWSDDGSKVFTASCDKTAKMWDLNSN-QSIQIAQHDAPIKTVHWVKAPNYSCIMTG 147

Query: 59  SWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110
           SWDK+LK+WDTR PNP+ T QLP+RCY   V YP+ VV TA+R L+V+ L+N
Sbjct: 148 SWDKSLKFWDTRSPNPLLTLQLPERCYCADVVYPMAVVATAERGLIVYQLEN 199

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Xenopus tropicalis (taxid: 8364)

>sp|Q5RF99|RAEL1_PONAB mRNA export factor OS=Pongo abelii GN=RAE1 PE=2 SV=1

 Score =  125 bits (315), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 59/112 (52%), Positives = 75/112 (66%), Gaps = 3/112 (2%)

Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI--PEMNLLATG 58
           VL   W DDG+ VF+  CDK  KMW L S  Q + +A HDAP+K + WI  P  + + TG
Sbjct: 89  VLDVCWSDDGSKVFTASCDKTAKMWDL-SSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTG 147

Query: 59  SWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110
           SWDKTLK+WDTR  NP+   QLP+RCY   V YP+ VV TA+R L+V+ L+N
Sbjct: 148 SWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLEN 199

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Pongo abelii (taxid: 9601)

>sp|P78406|RAE1L_HUMAN mRNA export factor OS=Homo sapiens GN=RAE1 PE=1 SV=1

 Score =  125 bits (315), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 59/112 (52%), Positives = 75/112 (66%), Gaps = 3/112 (2%)

Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI--PEMNLLATG 58
           VL   W DDG+ VF+  CDK  KMW L S  Q + +A HDAP+K + WI  P  + + TG
Sbjct: 89  VLDVCWSDDGSKVFTASCDKTAKMWDL-SSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTG 147

Query: 59  SWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110
           SWDKTLK+WDTR  NP+   QLP+RCY   V YP+ VV TA+R L+V+ L+N
Sbjct: 148 SWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLEN 199

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Homo sapiens (taxid: 9606)

>sp|Q5E9A4|RAE1L_BOVIN mRNA export factor OS=Bos taurus GN=RAE1 PE=2 SV=1

 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/112 (53%), Positives = 75/112 (66%), Gaps = 3/112 (2%)

Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI--PEMNLLATG 58
           VL   W DDG+ VF+  CDK  KMW L S  Q + +A HDAP+K V WI  P  + + TG
Sbjct: 89  VLDVCWSDDGSKVFTASCDKTAKMWDLNSN-QAIQIAQHDAPVKTVHWIKAPNYSCVMTG 147

Query: 59  SWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110
           SWDKTLK+WDTR  NP+   QLP+RCY   V YP+ VV TA+R L+V+ L+N
Sbjct: 148 SWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLEN 199

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Bos taurus (taxid: 9913)

>sp|Q8C570|RAE1L_MOUSE mRNA export factor OS=Mus musculus GN=Rae1 PE=1 SV=1

 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 59/112 (52%), Positives = 75/112 (66%), Gaps = 3/112 (2%)

Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI--PEMNLLATG 58
           VL   W DDG+ VF+  CDK  KMW L S  Q + +A HDAP+K + WI  P  + + TG
Sbjct: 89  VLDVCWSDDGSKVFTASCDKTAKMWDLNSN-QAIQIAQHDAPVKTIHWIKAPNYSCVMTG 147

Query: 59  SWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110
           SWDKTLK+WDTR  NP+   QLP+RCY   V YP+ VV TA+R L+V+ L+N
Sbjct: 148 SWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLEN 199

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Mus musculus (taxid: 10090)

>sp|A5GFN6|RAEL1_PIG mRNA export factor OS=Sus scrofa GN=RAE1 PE=3 SV=1

 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 59/112 (52%), Positives = 75/112 (66%), Gaps = 3/112 (2%)

Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI--PEMNLLATG 58
           VL   W DDG+ VF+  CDK  KMW L S  Q + +A HDAP+K + WI  P  + + TG
Sbjct: 89  VLDVCWSDDGSKVFTASCDKTAKMWDLNSN-QAIQIAQHDAPVKTIHWIKAPNYSCVMTG 147

Query: 59  SWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110
           SWDKTLK+WDTR  NP+   QLP+RCY   V YP+ VV TA+R L+V+ L+N
Sbjct: 148 SWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLEN 199

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Sus scrofa (taxid: 9823)

>sp|Q3SWS8|RAE1L_RAT mRNA export factor OS=Rattus norvegicus GN=Rae1 PE=2 SV=1

 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 59/112 (52%), Positives = 75/112 (66%), Gaps = 3/112 (2%)

Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI--PEMNLLATG 58
           VL   W DDG+ VF+  CDK  KMW L S  Q + +A HDAP+K + WI  P  + + TG
Sbjct: 89  VLDVCWSDDGSKVFTASCDKTAKMWDLNSN-QAIQIAQHDAPVKTIHWIKAPNYSCVMTG 147

Query: 59  SWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110
           SWDKTLK+WDTR  NP+   QLP+RCY   V YP+ VV TA+R L+V+ L+N
Sbjct: 148 SWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLEN 199

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Rattus norvegicus (taxid: 10116)

>sp|Q7ZWF0|RAE1L_DANRE mRNA export factor OS=Danio rerio GN=rae1 PE=2 SV=2

 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 57/112 (50%), Positives = 76/112 (67%), Gaps = 3/112 (2%)

Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI--PEMNLLATG 58
           VL   W DDG+ VF+  CDK  KMW L S  Q + +A H+ PI+ + WI  P  + + TG
Sbjct: 89  VLDVCWSDDGSKVFTASCDKTAKMWDLNSN-QAIQIAQHEGPIRTIHWIKAPNYSCIMTG 147

Query: 59  SWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110
           SWDKTLK+WDTR PNP+ + Q+P+RCY   V YP+ VV TA+R L+V+ L+N
Sbjct: 148 SWDKTLKFWDTRSPNPMMSLQMPERCYCADVVYPMAVVATAERGLIVYQLEN 199

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Danio rerio (taxid: 7955)

>sp|Q4R6D2|RAE1L_MACFA mRNA export factor OS=Macaca fascicularis GN=RAE1 PE=2 SV=1

 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 58/112 (51%), Positives = 73/112 (65%), Gaps = 3/112 (2%)

Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI--PEMNLLATG 58
           VL   W DDG+ VF+  CDK  KMW L S  Q + +A HDAP+K + WI  P  + + TG
Sbjct: 89  VLDVCWSDDGSKVFTASCDKTAKMWDL-SSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTG 147

Query: 59  SWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110
           SWDKTLK+WDTR  NP+   QLP+R Y   V YP+ VV TA R L+V+ L+N
Sbjct: 148 SWDKTLKFWDTRSSNPMMVLQLPERYYCADVIYPMAVVATAGRGLIVYQLEN 199

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Macaca fascicularis (taxid: 9541)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
225447856	350	PREDICTED: rae1-like protein At1g80670 [	1.0	0.32	0.964	7e-60
255572775	349	plant poly(A)+ RNA export protein, putat	1.0	0.320	0.946	8e-59
356525894	347	PREDICTED: uncharacterized protein LOC10	1.0	0.322	0.928	6e-58
116783044	349	unknown [Picea sitchensis]	1.0	0.320	0.901	8e-58
225443109	345	PREDICTED: rae1-like protein At1g80670 [	1.0	0.324	0.919	1e-57
255631778	198	unknown [Glycine max]	1.0	0.565	0.928	1e-57
356558620	347	PREDICTED: rae1-like protein At1g80670-l	1.0	0.322	0.910	2e-57
147765521	197	hypothetical protein VITISV_035178 [Viti	1.0	0.568	0.919	4e-57
357445765	351	RNA export [Medicago truncatula] gi|3554	1.0	0.319	0.883	4e-57
363806810	347	uncharacterized protein LOC100819240 [Gl	1.0	0.322	0.892	8e-57

>gi|225447856|ref|XP_002271645.1| PREDICTED: rae1-like protein At1g80670 [Vitis vinifera] gi|296081523|emb|CBI20046.3| unnamed protein product [Vitis vinifera]

 Score =  234 bits (596), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 108/112 (96%), Positives = 111/112 (99%)

Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
           VLCS WKDDGTTVFSGGCDKQVKMWPLLSGGQP+TVAMHDAPIKEVAWIPEMNLLATGSW
Sbjct: 76  VLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPMTVAMHDAPIKEVAWIPEMNLLATGSW 135

Query: 61  DKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112
           DKTLKYWDTRQPNPVHTQQLPDRCYALTVR+PLMVVGTADRNL+VFNLQNPQ
Sbjct: 136 DKTLKYWDTRQPNPVHTQQLPDRCYALTVRHPLMVVGTADRNLIVFNLQNPQ 187

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572775|ref|XP_002527320.1| plant poly(A)+ RNA export protein, putative [Ricinus communis] gi|223533320|gb|EEF35072.1| plant poly(A)+ RNA export protein, putative [Ricinus communis]

 Score =  230 bits (586), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 106/112 (94%), Positives = 109/112 (97%)

Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
           VLCS WKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKE+AWIPEMNLLATGSW
Sbjct: 75  VLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEIAWIPEMNLLATGSW 134

Query: 61  DKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112
           DKTLKYWDTRQ NPVHTQQLPDRCYA+TVRYPLMVVGTADRNL+VFNLQ PQ
Sbjct: 135 DKTLKYWDTRQSNPVHTQQLPDRCYAMTVRYPLMVVGTADRNLIVFNLQQPQ 186

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525894|ref|XP_003531556.1| PREDICTED: uncharacterized protein LOC100527204 [Glycine max]

 Score =  227 bits (579), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 104/112 (92%), Positives = 110/112 (98%)

Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
           VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQP+TVAMHDAPIKEVAWIPEMNLL TGSW
Sbjct: 73  VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPMTVAMHDAPIKEVAWIPEMNLLVTGSW 132

Query: 61  DKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112
           DKTLKYWDTRQ NPVHTQQLP+RCYA+TVR+PLMVVGTADRNL+V+NLQNPQ
Sbjct: 133 DKTLKYWDTRQSNPVHTQQLPERCYAMTVRHPLMVVGTADRNLIVYNLQNPQ 184

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116783044|gb|ABK22773.1| unknown [Picea sitchensis]

 Score =  227 bits (578), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 101/112 (90%), Positives = 109/112 (97%)

Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
           VLCSTWKDDGT VFS GCDKQ KMWPLLSGGQPVTVAMHDAPIK++AWIPEMNLLATGSW
Sbjct: 75  VLCSTWKDDGTAVFSAGCDKQAKMWPLLSGGQPVTVAMHDAPIKDIAWIPEMNLLATGSW 134

Query: 61  DKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112
           DKTLKYWDTRQPNPVHTQQLP+RC+AL+VR+PLMVVGTADRNL++FNLQNPQ
Sbjct: 135 DKTLKYWDTRQPNPVHTQQLPERCFALSVRHPLMVVGTADRNLIIFNLQNPQ 186

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443109|ref|XP_002274315.1| PREDICTED: rae1-like protein At1g80670 [Vitis vinifera] gi|297743618|emb|CBI36485.3| unnamed protein product [Vitis vinifera]

 Score =  226 bits (577), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 103/112 (91%), Positives = 107/112 (95%)

Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
           VLCS WKDDGT VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAW+PEMNLL TGSW
Sbjct: 72  VLCSAWKDDGTIVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWVPEMNLLVTGSW 131

Query: 61  DKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112
           DKT+KYWDTRQ NPVHTQQLPDRCYA TVR+PLMVVGTADRNL+VFNLQNPQ
Sbjct: 132 DKTIKYWDTRQSNPVHTQQLPDRCYAFTVRHPLMVVGTADRNLIVFNLQNPQ 183

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255631778|gb|ACU16256.1| unknown [Glycine max]

 Score =  226 bits (576), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 104/112 (92%), Positives = 110/112 (98%)

Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
           VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQP+TVAMHDAPIKEVAWIPEMNLL TGSW
Sbjct: 73  VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPMTVAMHDAPIKEVAWIPEMNLLVTGSW 132

Query: 61  DKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112
           DKTLKYWDTRQ NPVHTQQLP+RCYA+TVR+PLMVVGTADRNL+V+NLQNPQ
Sbjct: 133 DKTLKYWDTRQSNPVHTQQLPERCYAMTVRHPLMVVGTADRNLIVYNLQNPQ 184

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558620|ref|XP_003547602.1| PREDICTED: rae1-like protein At1g80670-like [Glycine max]

 Score =  225 bits (574), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 102/112 (91%), Positives = 110/112 (98%)

Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
           VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQP+TVAMHDAPIKE+AWIPEMNLL TGSW
Sbjct: 73  VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPMTVAMHDAPIKELAWIPEMNLLVTGSW 132

Query: 61  DKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112
           DKT+KYWDTRQ NPVHTQQLP+RCYA+TVR+PLMVVGTADRNL+V+NLQNPQ
Sbjct: 133 DKTMKYWDTRQSNPVHTQQLPERCYAMTVRHPLMVVGTADRNLIVYNLQNPQ 184

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147765521|emb|CAN60438.1| hypothetical protein VITISV_035178 [Vitis vinifera]

 Score =  224 bits (572), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 103/112 (91%), Positives = 107/112 (95%)

Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
           VLCS WKDDGT VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAW+PEMNLL TGSW
Sbjct: 72  VLCSAWKDDGTIVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWVPEMNLLVTGSW 131

Query: 61  DKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112
           DKT+KYWDTRQ NPVHTQQLPDRCYA TVR+PLMVVGTADRNL+VFNLQNPQ
Sbjct: 132 DKTIKYWDTRQSNPVHTQQLPDRCYAFTVRHPLMVVGTADRNLIVFNLQNPQ 183

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445765|ref|XP_003593160.1| RNA export [Medicago truncatula] gi|355482208|gb|AES63411.1| RNA export [Medicago truncatula]

 Score =  224 bits (572), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 99/112 (88%), Positives = 110/112 (98%)

Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
           VLCS WKDDGTTVFSGGCDKQVKMWPLLSGGQP+TVAMHDAPIK++AWIPEMNLLATGSW
Sbjct: 77  VLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPITVAMHDAPIKDIAWIPEMNLLATGSW 136

Query: 61  DKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112
           DK +KYWDTRQPNPVHTQQLP+RCYA+TV++PLMVVGTADRN++V+NLQNPQ
Sbjct: 137 DKNIKYWDTRQPNPVHTQQLPERCYAMTVKHPLMVVGTADRNIIVYNLQNPQ 188

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806810|ref|NP_001242030.1| uncharacterized protein LOC100819240 [Glycine max] gi|255638763|gb|ACU19686.1| unknown [Glycine max]

 Score =  223 bits (569), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 100/112 (89%), Positives = 109/112 (97%)

Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
           VLCS WKDDGTTVFSGGCDKQVKMWPL+SGGQP+TVAMHDAP+K++AWI EMNLLATGSW
Sbjct: 73  VLCSAWKDDGTTVFSGGCDKQVKMWPLMSGGQPMTVAMHDAPVKDIAWISEMNLLATGSW 132

Query: 61  DKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112
           DKTLKYWDTRQ NPVHTQQLPDRCYA+TV++PLMVVGTADRNL+VFNLQNPQ
Sbjct: 133 DKTLKYWDTRQSNPVHTQQLPDRCYAITVKHPLMVVGTADRNLIVFNLQNPQ 184

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
TAIR|locus:2025732	349	RAE1 "AT1G80670" [Arabidopsis	1.0	0.320	0.866	2.4e-53
UNIPROTKB|P78406	368	RAE1 "mRNA export factor" [Hom	0.973	0.296	0.526	1e-29
UNIPROTKB|Q5E9A4	368	RAE1 "mRNA export factor" [Bos	0.973	0.296	0.535	1.6e-29
UNIPROTKB|E2RSV2	368	RAE1 "Uncharacterized protein"	0.973	0.296	0.526	2.1e-29
UNIPROTKB|A5GFN6	368	RAE1 "mRNA export factor" [Sus	0.973	0.296	0.526	2.1e-29
MGI|MGI:1913929	368	Rae1 "RAE1 RNA export 1 homolo	0.973	0.296	0.526	2.1e-29
RGD|1311540	368	Rae1 "RAE1 RNA export 1 homolo	0.973	0.296	0.526	2.1e-29
UNIPROTKB|E1BVV3	214	Gga.22300 "Uncharacterized pro	0.973	0.509	0.517	2.1e-29
UNIPROTKB|E1C7F8	368	Gga.22300 "Uncharacterized pro	0.973	0.296	0.517	2.1e-29
FB|FBgn0034646	360	Rae1 "Rae1" [Drosophila melano	0.973	0.302	0.544	2.1e-29

TAIR|locus:2025732 RAE1 "AT1G80670" [Arabidopsis thaliana (taxid:3702)]

 Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
 Identities = 97/112 (86%), Positives = 104/112 (92%)

Query:     1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
             VLCS WKDDGTTVFSGGCDKQ KMWPLLSGGQPVTVAMH+ PI  +AWIP MNLLATGSW
Sbjct:    75 VLCSAWKDDGTTVFSGGCDKQAKMWPLLSGGQPVTVAMHEGPIAAMAWIPGMNLLATGSW 134

Query:    61 DKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112
             DKTLKYWDTRQ NPVHTQQLPD+CY L+V++PLMVVGTADRNL+VFNLQNPQ
Sbjct:   135 DKTLKYWDTRQQNPVHTQQLPDKCYTLSVKHPLMVVGTADRNLIVFNLQNPQ 186

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0005635 "nuclear envelope" evidence=IDA

UNIPROTKB|P78406 RAE1 "mRNA export factor" [Homo sapiens (taxid:9606)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 59/112 (52%), Positives = 75/112 (66%)

Query:     1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI--PEMNLLATG 58
             VL   W DDG+ VF+  CDK  KMW L S  Q + +A HDAP+K + WI  P  + + TG
Sbjct:    89 VLDVCWSDDGSKVFTASCDKTAKMWDL-SSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTG 147

Query:    59 SWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110
             SWDKTLK+WDTR  NP+   QLP+RCY   V YP+ VV TA+R L+V+ L+N
Sbjct:   148 SWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLEN 199

GO:0071407 "cellular response to organic cyclic compound" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008017 "microtubule binding" evidence=ISS

GO:0003723 "RNA binding" evidence=TAS

GO:0005634 "nucleus" evidence=TAS

GO:0005640 "nuclear outer membrane" evidence=TAS

GO:0005643 "nuclear pore" evidence=TAS

GO:0005856 "cytoskeleton" evidence=TAS

GO:0006406 "mRNA export from nucleus" evidence=TAS

GO:0005635 "nuclear envelope" evidence=TAS

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0008645 "hexose transport" evidence=TAS

GO:0010827 "regulation of glucose transport" evidence=TAS

GO:0015758 "glucose transport" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

UNIPROTKB|Q5E9A4 RAE1 "mRNA export factor" [Bos taurus (taxid:9913)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 60/112 (53%), Positives = 75/112 (66%)

Query:     1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI--PEMNLLATG 58
             VL   W DDG+ VF+  CDK  KMW L S  Q + +A HDAP+K V WI  P  + + TG
Sbjct:    89 VLDVCWSDDGSKVFTASCDKTAKMWDLNSN-QAIQIAQHDAPVKTVHWIKAPNYSCVMTG 147

Query:    59 SWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110
             SWDKTLK+WDTR  NP+   QLP+RCY   V YP+ VV TA+R L+V+ L+N
Sbjct:   148 SWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLEN 199

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0071407 "cellular response to organic cyclic compound" evidence=IEA

UNIPROTKB|E2RSV2 RAE1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 59/112 (52%), Positives = 75/112 (66%)

Query:     1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI--PEMNLLATG 58
             VL   W DDG+ VF+  CDK  KMW L S  Q + +A HDAP+K + WI  P  + + TG
Sbjct:    89 VLDVCWSDDGSKVFTASCDKTAKMWDLNSN-QAIQIAQHDAPVKTIHWIKAPNYSCVMTG 147

Query:    59 SWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110
             SWDKTLK+WDTR  NP+   QLP+RCY   V YP+ VV TA+R L+V+ L+N
Sbjct:   148 SWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLEN 199

GO:0071407 "cellular response to organic cyclic compound" evidence=IEA

UNIPROTKB|A5GFN6 RAE1 "mRNA export factor" [Sus scrofa (taxid:9823)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 59/112 (52%), Positives = 75/112 (66%)

Query:     1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI--PEMNLLATG 58
             VL   W DDG+ VF+  CDK  KMW L S  Q + +A HDAP+K + WI  P  + + TG
Sbjct:    89 VLDVCWSDDGSKVFTASCDKTAKMWDLNSN-QAIQIAQHDAPVKTIHWIKAPNYSCVMTG 147

Query:    59 SWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110
             SWDKTLK+WDTR  NP+   QLP+RCY   V YP+ VV TA+R L+V+ L+N
Sbjct:   148 SWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLEN 199

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0071407 "cellular response to organic cyclic compound" evidence=IEA

MGI|MGI:1913929 Rae1 "RAE1 RNA export 1 homolog (S. pombe)" [Mus musculus (taxid:10090)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 59/112 (52%), Positives = 75/112 (66%)

Query:     1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI--PEMNLLATG 58
             VL   W DDG+ VF+  CDK  KMW L S  Q + +A HDAP+K + WI  P  + + TG
Sbjct:    89 VLDVCWSDDGSKVFTASCDKTAKMWDLNSN-QAIQIAQHDAPVKTIHWIKAPNYSCVMTG 147

Query:    59 SWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110
             SWDKTLK+WDTR  NP+   QLP+RCY   V YP+ VV TA+R L+V+ L+N
Sbjct:   148 SWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLEN 199

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0071407 "cellular response to organic cyclic compound" evidence=IDA

RGD|1311540 Rae1 "RAE1 RNA export 1 homolog (S. pombe)" [Rattus norvegicus (taxid:10116)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 59/112 (52%), Positives = 75/112 (66%)

Query:     1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI--PEMNLLATG 58
             VL   W DDG+ VF+  CDK  KMW L S  Q + +A HDAP+K + WI  P  + + TG
Sbjct:    89 VLDVCWSDDGSKVFTASCDKTAKMWDLNSN-QAIQIAQHDAPVKTIHWIKAPNYSCVMTG 147

Query:    59 SWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110
             SWDKTLK+WDTR  NP+   QLP+RCY   V YP+ VV TA+R L+V+ L+N
Sbjct:   148 SWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLEN 199

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0071407 "cellular response to organic cyclic compound" evidence=IEA;ISO

UNIPROTKB|E1BVV3 Gga.22300 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 58/112 (51%), Positives = 75/112 (66%)

Query:     1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI--PEMNLLATG 58
             VL   W DDG+ VF+  CDK  KMW L S  Q + +A HDAP+K + WI  P  + + TG
Sbjct:    89 VLDGCWSDDGSKVFTASCDKTAKMWDLNSN-QAIQIAQHDAPVKTIHWIKAPNYSCVMTG 147

Query:    59 SWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110
             SWDKTLK+WDTR P P+ T QLP+RCY   V +P+  V TA+R L+V+ L+N
Sbjct:   148 SWDKTLKFWDTRSPTPMMTLQLPERCYCADVVHPMAAVATAERGLIVYQLEN 199

GO:0071407 "cellular response to organic cyclic compound" evidence=IEA

UNIPROTKB|E1C7F8 Gga.22300 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 58/112 (51%), Positives = 75/112 (66%)

Query:     1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI--PEMNLLATG 58
             VL   W DDG+ VF+  CDK  KMW L S  Q + +A HDAP+K + WI  P  + + TG
Sbjct:    89 VLDGCWSDDGSKVFTASCDKTAKMWDLNSN-QAIQIAQHDAPVKTIHWIKAPNYSCVMTG 147

Query:    59 SWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110
             SWDKTLK+WDTR P P+ T QLP+RCY   V +P+  V TA+R L+V+ L+N
Sbjct:   148 SWDKTLKFWDTRSPTPMMTLQLPERCYCADVVHPMAAVATAERGLIVYQLEN 199

GO:0071407 "cellular response to organic cyclic compound" evidence=IEA

FB|FBgn0034646 Rae1 "Rae1" [Drosophila melanogaster (taxid:7227)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 61/112 (54%), Positives = 75/112 (66%)

Query:     1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI--PEMNLLATG 58
             VL   W DDG+ VF   CDKQVK+W L S  Q + VA HD P+K    +  P    L TG
Sbjct:    85 VLDVCWSDDGSKVFVASCDKQVKLWDLASD-QVMQVAAHDGPVKTCHMVKGPTYTCLMTG 143

Query:    59 SWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110
             SWDKTLK+WDTR PNP+ T  LP+RCY   V YP+ VVGTA+R L++++LQN
Sbjct:   144 SWDKTLKFWDTRSPNPMMTINLPERCYCADVEYPMAVVGTANRGLIIYSLQN 195

GO:2000045 "regulation of G1/S transition of mitotic cell cycle" evidence=IMP

GO:0005635 "nuclear envelope" evidence=IDA

GO:0006406 "mRNA export from nucleus" evidence=IMP

GO:0051297 "centrosome organization" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0045886 "negative regulation of synaptic growth at neuromuscular junction" evidence=IMP

GO:0010506 "regulation of autophagy" evidence=IMP

GO:0005643 "nuclear pore" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q38942	RAE1L_ARATH	No assigned EC number	0.8660	1.0	0.3209	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00031579001	SubName- Full=Chromosome chr12 scaffold_57, whole genome shotgun sequence; (350 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00000457001	SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (877 aa)					•	•			0.829
	GSVIVG00014166001	SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (333 aa)			•						0.488
	GSVIVG00030682001	SubName- Full=Putative uncharacterized protein (Chromosome chr1 scaffold_5, whole genome shotgu [...] (326 aa)			•	•					0.473
	GSVIVG00000022001	SubName- Full=Chromosome chr17 scaffold_101, whole genome shotgun sequence; (461 aa)			•	•					0.464
	GSVIVG00025117001	SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (350 aa)			•						0.464
	GSVIVG00020679001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (338 aa)			•		•				0.463
	GSVIVG00003115001	SubName- Full=Chromosome undetermined scaffold_139, whole genome shotgun sequence; (352 aa)			•						0.462
	GSVIVG00003105001	SubName- Full=Chromosome undetermined scaffold_139, whole genome shotgun sequence; (328 aa)			•						0.456
	GSVIVG00017915001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (459 aa)			•						0.452
	GSVIVG00001683001	SubName- Full=Chromosome chr13 scaffold_120, whole genome shotgun sequence; (422 aa)			•						0.449

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	112
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-14
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-12
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-11
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-11
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-10
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	8e-07
smart00320	40	smart00320, WD40, WD40 repeats	9e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 65.4 bits (160), Expect = 6e-14
 Identities = 25/77 (32%), Positives = 40/77 (51%)

Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
           V       DGT + SG  DK +++W L +G    T+  H + +  VA+ P+  +L++ S 
Sbjct: 54  VRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSR 113

Query: 61  DKTLKYWDTRQPNPVHT 77
           DKT+K WD      + T
Sbjct: 114 DKTIKVWDVETGKCLTT 130

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 64.3 bits (157), Expect = 1e-13
 Identities = 24/77 (31%), Positives = 37/77 (48%)

Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
           V    +  DG  + S   DK +K+W + +G    T+  H   +  VA+ P+   +A+ S 
Sbjct: 96  VSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ 155

Query: 61  DKTLKYWDTRQPNPVHT 77
           D T+K WD R    V T
Sbjct: 156 DGTIKLWDLRTGKCVAT 172

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 62.7 bits (153), Expect = 5e-13
 Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 5/116 (4%)

Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
           V C  +  DG  + +G  D  +K+W L +G    T+  H  P+++VA   +   LA+GS 
Sbjct: 12  VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS 71

Query: 61  DKTLKYWDTRQPNPVHTQQLPDRCYALTVRY----PLMVVGTADRNLVVFNLQNPQ 112
           DKT++ WD      V T       Y  +V +     ++   + D+ + V++++  +
Sbjct: 72  DKTIRLWDLETGECVRTLT-GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK 126

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 60.4 bits (147), Expect = 4e-12
 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 3/110 (2%)

Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
           V    +  DG  + S   D  +K+W L +G    T+  H+  +  VA+ P+  LLA+GS 
Sbjct: 180 VNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSE 239

Query: 61  DKTLKYWDTRQPNPVHT-QQLPDRCYALTV--RYPLMVVGTADRNLVVFN 107
           D T++ WD R    V T     +   +L        +  G+AD  + +++
Sbjct: 240 DGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 58.6 bits (140), Expect = 2e-11
 Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 3   CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV-TVAMHDAPIKEVAWIPEMNLLATGSWD 61
            S++  DG+ + SG  D  +++W L S    + T++ H + +  VA+ P+  LLA+GS D
Sbjct: 246 VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSD 305

Query: 62  KTLKYWDTRQPNPVHT 77
            T++ WD      + +
Sbjct: 306 GTVRLWDLETGKLLSS 321

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 58.1 bits (141), Expect = 3e-11
 Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 7/117 (5%)

Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTV-AMHDAPIKEVAWIPEMNLLATGS 59
           V    +  DGT V S   D  +K+W L   G+ V     H   +  VA+ P+   L + S
Sbjct: 138 VNSVAFSPDGTFVASSSQDGTIKLWDL-RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS 196

Query: 60  WDKTLKYWDTRQPNPVHTQQL-PDRCYALTV---RYPLMVVGTADRNLVVFNLQNPQ 112
            D T+K WD      + T +   +   ++      Y L+  G+ D  + V++L+  +
Sbjct: 197 SDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLRTGE 252

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 55.9 bits (133), Expect = 2e-10
 Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 5/115 (4%)

Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV--TVAMHDAPIKEVAWIPEMNLLATG 58
           VL   +  DG  + SG  D  V++W L +G      T+  H+ P+  +++ P+ +LL +G
Sbjct: 287 VLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSG 346

Query: 59  -SWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTA--DRNLVVFNLQN 110
            S D T++ WD R   P+ T +      +++      VV +   D  + +++L  
Sbjct: 347 GSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLST 401

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 53.2 bits (126), Expect = 2e-09
 Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 5/115 (4%)

Query: 1   VLCSTWKDDGTTVFSGGC-DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMN-LLATG 58
           V    +  DG  + SG   D  +K+W L +G    T+A H  P+  +A+ P+   L+A+G
Sbjct: 158 VTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASG 217

Query: 59  SWDKTLKYWDTRQPNPVHTQ---QLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110
           S D T++ WD      + +           + +    L+  G++D  + +++L++
Sbjct: 218 SSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRS 272

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 3/77 (3%)

Query: 39  HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ---LPDRCYALTVRYPLMV 95
           H   +  VA+ P+  LLATGS D T+K WD      + T +    P R  A +     + 
Sbjct: 8   HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLA 67

Query: 96  VGTADRNLVVFNLQNPQ 112
            G++D+ + +++L+  +
Sbjct: 68  SGSSDKTIRLWDLETGE 84

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 45.8 bits (107), Expect = 8e-07
 Identities = 23/114 (20%), Positives = 53/114 (46%), Gaps = 5/114 (4%)

Query: 1   VLCSTWKDDGTTVFSGGC-DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGS 59
           V   ++  DG+ + SGG  D  +++W L +G    T+  H   +  V++ P+  ++++GS
Sbjct: 331 VSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGS 389

Query: 60  WDKTLKYWDTRQPNPVHTQ---QLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110
            D T++ WD    + +               +     +  G++D  + +++L+ 
Sbjct: 390 TDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 42.0 bits (99), Expect = 8e-07
 Identities = 15/30 (50%), Positives = 21/30 (70%)

Query: 39 HDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
          H  P+  VA+ P+ NLLA+GS D T++ WD
Sbjct: 10 HTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 41.9 bits (99), Expect = 9e-07
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 35 TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
          T+  H  P+  VA+ P+   LA+GS D T+K WD
Sbjct: 7  TLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 40.8 bits (94), Expect = 4e-05
 Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 10/122 (8%)

Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTV--AMHDAPIKEVAWI-PEMN--LL 55
           +    +  DG  + SG  D  +K+W L +G + +     +HD+ + ++A   P+ N  LL
Sbjct: 68  ITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILL 127

Query: 56  ATGSWDKTLKYWDTRQPN-PVHT-QQLPDRCYALTVR---YPLMVVGTADRNLVVFNLQN 110
           A+ S D T+K WD   P   + T +   +   +L        L    + D  + +++L+ 
Sbjct: 128 ASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT 187

Query: 111 PQ 112
            +
Sbjct: 188 GK 189

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 37.0 bits (84), Expect = 8e-04
 Identities = 22/119 (18%), Positives = 45/119 (37%), Gaps = 12/119 (10%)

Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
           +L     + G  + +   D  V +  L      + +  H+  I  +A+ P+  LL +GS 
Sbjct: 30  LLSLGSSESGILLLALLSDSLVSLPDL----SSLLLRGHEDSITSIAFSPDGELLLSGSS 85

Query: 61  DKTLKYWDTRQPNP-VHTQQLPDRCYALTVRYP-------LMVVGTADRNLVVFNLQNP 111
           D T+K WD       + + +         +          L+   + D  + +++L  P
Sbjct: 86  DGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTP 144

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	112
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.95
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.95
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.95
KOG0266	456	consensus WD40 repeat-containing protein [General	99.94
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.94
PTZ00421	493	coronin; Provisional	99.94
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.93
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.93
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.93
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.93
KOG0266	456	consensus WD40 repeat-containing protein [General	99.92
PTZ00420	568	coronin; Provisional	99.92
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.91
KOG0286	343	consensus G-protein beta subunit [General function	99.91
KOG0286	343	consensus G-protein beta subunit [General function	99.91
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.91
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.9
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.9
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.9
PTZ00421	493	coronin; Provisional	99.9
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.9
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.9
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.89
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.89
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.89
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.88
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.88
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.88
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.88
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.88
KOG0645	312	consensus WD40 repeat protein [General function pr	99.88
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.88
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.88
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.87
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.87
PTZ00420	568	coronin; Provisional	99.87
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.87
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.87
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.87
KOG0289	506	consensus mRNA splicing factor [General function p	99.87
PLN00181	793	protein SPA1-RELATED; Provisional	99.86
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.86
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.86
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.86
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.86
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.85
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.85
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.85
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.85
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.84
KOG0289	506	consensus mRNA splicing factor [General function p	99.84
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.84
KOG0296	399	consensus Angio-associated migratory cell protein	99.84
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.84
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.84
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.84
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.83
KOG1273	405	consensus WD40 repeat protein [General function pr	99.83
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.83
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.83
PLN00181	793	protein SPA1-RELATED; Provisional	99.83
KOG0645	312	consensus WD40 repeat protein [General function pr	99.83
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.82
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.82
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.82
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.82
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.82
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.82
KOG0296	399	consensus Angio-associated migratory cell protein	99.82
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.82
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.81
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.81
KOG0643	327	consensus Translation initiation factor 3, subunit	99.8
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.8
KOG0267	825	consensus Microtubule severing protein katanin p80	99.8
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.8
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.8
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.79
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.79
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.79
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.79
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.78
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.78
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.78
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.78
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.78
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.78
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.78
KOG0267	825	consensus Microtubule severing protein katanin p80	99.77
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.77
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.77
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.77
KOG0646	476	consensus WD40 repeat protein [General function pr	99.76
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.76
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.76
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.76
KOG0639	705	consensus Transducin-like enhancer of split protei	99.76
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.76
KOG0639	705	consensus Transducin-like enhancer of split protei	99.76
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.75
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.75
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.74
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.74
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.74
KOG1274	933	consensus WD40 repeat protein [General function pr	99.73
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.73
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.73
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.73
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.73
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.73
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.73
KOG0641	350	consensus WD40 repeat protein [General function pr	99.72
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.72
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.72
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.72
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.71
KOG0643	327	consensus Translation initiation factor 3, subunit	99.71
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.71
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.7
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.7
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.7
KOG1539	910	consensus WD repeat protein [General function pred	99.7
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.7
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.69
KOG1310	758	consensus WD40 repeat protein [General function pr	99.68
KOG0649	325	consensus WD40 repeat protein [General function pr	99.68
KOG1539	910	consensus WD repeat protein [General function pred	99.68
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.68
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.67
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.67
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.67
KOG0646	476	consensus WD40 repeat protein [General function pr	99.67
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.67
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.67
KOG1273	405	consensus WD40 repeat protein [General function pr	99.66
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.65
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.65
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.65
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.64
KOG2048	691	consensus WD40 repeat protein [General function pr	99.64
KOG2055	514	consensus WD40 repeat protein [General function pr	99.63
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.63
KOG4328	498	consensus WD40 protein [Function unknown]	99.63
KOG0641	350	consensus WD40 repeat protein [General function pr	99.63
KOG1274	933	consensus WD40 repeat protein [General function pr	99.63
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.62
KOG2096	420	consensus WD40 repeat protein [General function pr	99.62
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.62
KOG2055	514	consensus WD40 repeat protein [General function pr	99.61
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.61
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.61
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.61
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.61
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.6
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.6
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.59
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.58
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.58
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.58
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.57
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.57
KOG2096	420	consensus WD40 repeat protein [General function pr	99.57
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.56
KOG4227	609	consensus WD40 repeat protein [General function pr	99.56
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.56
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.56
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.55
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.55
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.55
KOG2048	691	consensus WD40 repeat protein [General function pr	99.55
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.55
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.55
KOG4328	498	consensus WD40 protein [Function unknown]	99.54
KOG1188	376	consensus WD40 repeat protein [General function pr	99.53
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.53
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.53
COG2319	466	FOG: WD40 repeat [General function prediction only	99.53
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.53
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.52
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.51
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.51
KOG2695	425	consensus WD40 repeat protein [General function pr	99.5
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.5
KOG1963	792	consensus WD40 repeat protein [General function pr	99.5
KOG0649	325	consensus WD40 repeat protein [General function pr	99.5
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.48
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.44
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.43
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.42
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.41
KOG2321	703	consensus WD40 repeat protein [General function pr	99.41
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.4
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.39
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.39
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.39
KOG1188	376	consensus WD40 repeat protein [General function pr	99.35
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.35
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.35
KOG2139	445	consensus WD40 repeat protein [General function pr	99.34
COG2319	466	FOG: WD40 repeat [General function prediction only	99.33
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.33
KOG2315	566	consensus Predicted translation initiation factor	99.32
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.31
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.29
PRK11028	330	6-phosphogluconolactonase; Provisional	99.29
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.29
KOG2139	445	consensus WD40 repeat protein [General function pr	99.28
KOG2321	703	consensus WD40 repeat protein [General function pr	99.27
PRK01742	429	tolB translocation protein TolB; Provisional	99.26
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.26
KOG4227	609	consensus WD40 repeat protein [General function pr	99.26
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.26
PRK11028	330	6-phosphogluconolactonase; Provisional	99.26
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.25
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.25
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.25
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.23
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.21
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.21
PRK05137	435	tolB translocation protein TolB; Provisional	99.21
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.19
PRK01742	429	tolB translocation protein TolB; Provisional	99.19
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.18
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.17
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.17
PRK03629	429	tolB translocation protein TolB; Provisional	99.17
KOG1310	758	consensus WD40 repeat protein [General function pr	99.16
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.15
PRK03629	429	tolB translocation protein TolB; Provisional	99.11
PRK04922	433	tolB translocation protein TolB; Provisional	99.1
KOG1963	792	consensus WD40 repeat protein [General function pr	99.09
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.09
PRK02889	427	tolB translocation protein TolB; Provisional	99.08
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	99.08
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.08
PRK04922	433	tolB translocation protein TolB; Provisional	99.07
PRK02889	427	tolB translocation protein TolB; Provisional	99.04
PRK00178	430	tolB translocation protein TolB; Provisional	99.04
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	99.04
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.04
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.0
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	98.99
KOG3881	412	consensus Uncharacterized conserved protein [Funct	98.99
PRK01029	428	tolB translocation protein TolB; Provisional	98.99
PRK04792	448	tolB translocation protein TolB; Provisional	98.96
PRK05137	435	tolB translocation protein TolB; Provisional	98.95
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.94
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.91
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.91
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.91
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.87
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	98.87
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.86
PRK00178	430	tolB translocation protein TolB; Provisional	98.86
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	98.85
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.85
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.85
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.84
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.83
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.83
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.82
PRK01029	428	tolB translocation protein TolB; Provisional	98.8
KOG4547	541	consensus WD40 repeat-containing protein [General	98.8
KOG4547	541	consensus WD40 repeat-containing protein [General	98.79
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.78
PRK04792	448	tolB translocation protein TolB; Provisional	98.77
KOG0644	1113	consensus Uncharacterized conserved protein, conta	98.76
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.75
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.74
KOG1334	559	consensus WD40 repeat protein [General function pr	98.74
KOG1334	559	consensus WD40 repeat protein [General function pr	98.69
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.65
PRK04043	419	tolB translocation protein TolB; Provisional	98.64
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.61
PRK04043	419	tolB translocation protein TolB; Provisional	98.61
COG4946	668	Uncharacterized protein related to the periplasmic	98.6
COG4946	668	Uncharacterized protein related to the periplasmic	98.58
KOG2315	566	consensus Predicted translation initiation factor	98.58
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.57
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.55
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.55
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.53
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.51
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.49
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.48
KOG2314	698	consensus Translation initiation factor 3, subunit	98.47
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.47
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.46
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.45
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.44
KOG3621	726	consensus WD40 repeat-containing protein [General	98.43
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.41
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.4
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.38
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.36
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.33
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.33
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.33
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.3
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.29
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.27
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.25
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.24
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.23
KOG2695	425	consensus WD40 repeat protein [General function pr	98.19
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.17
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.15
PRK02888	635	nitrous-oxide reductase; Validated	98.15
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.13
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	98.09
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.06
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	98.05
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.03
KOG2314	698	consensus Translation initiation factor 3, subunit	97.92
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.88
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.87
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.87
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.86
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	97.85
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.85
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.84
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.79
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.78
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.77
KOG3621	726	consensus WD40 repeat-containing protein [General	97.77
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.69
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.68
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.65
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.64
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.64
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.61
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.59
PRK13616	591	lipoprotein LpqB; Provisional	97.58
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.58
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.57
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.56
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.52
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.5
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.46
KOG2444	238	consensus WD40 repeat protein [General function pr	97.42
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.4
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.4
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.39
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.38
COG3391	381	Uncharacterized conserved protein [Function unknow	97.37
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.35
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.32
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.31
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.26
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.24
PRK02888	635	nitrous-oxide reductase; Validated	97.16
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.1
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	97.1
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	96.92
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	96.91
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.89
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.88
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.75
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.73
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.72
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.65
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.6
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.6
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.53
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.48
KOG2395	644	consensus Protein involved in vacuole import and d	96.47
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	96.46
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	96.3
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.27
PRK13616	591	lipoprotein LpqB; Provisional	96.24
KOG2444	238	consensus WD40 repeat protein [General function pr	96.22
COG3391	381	Uncharacterized conserved protein [Function unknow	96.1
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	96.03
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.01
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	95.93
PHA02713	557	hypothetical protein; Provisional	95.92
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	95.88
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.72
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.69
KOG2395	644	consensus Protein involved in vacuole import and d	95.66
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.65
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.37
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	95.35
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	95.15
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.12
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.06
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	94.92
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.88
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	94.85
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	94.7
COG5167	776	VID27 Protein involved in vacuole import and degra	94.59
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	94.22
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	94.15
PRK10115	686	protease 2; Provisional	94.08
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	93.97
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	93.85
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	93.82
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	93.8
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	93.79
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	93.68
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	93.57
PHA02713	557	hypothetical protein; Provisional	93.34
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	93.25
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	93.08
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	93.02
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	92.99
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	92.91
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	92.73
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	92.67
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	92.46
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	92.18
KOG3616	1636	consensus Selective LIM binding factor [Transcript	92.18
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	92.03
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	91.97
KOG2377	657	consensus Uncharacterized conserved protein [Funct	91.83
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	91.65
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	91.49
PHA03098	534	kelch-like protein; Provisional	91.39
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	91.33
PHA03098	534	kelch-like protein; Provisional	91.33
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	91.32
COG5276	370	Uncharacterized conserved protein [Function unknow	91.14
COG5167	776	VID27 Protein involved in vacuole import and degra	91.11
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	91.1
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.06
KOG2377	657	consensus Uncharacterized conserved protein [Funct	90.95
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	90.73
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	90.67
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	90.57
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	90.51
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	90.35
PHA02790	480	Kelch-like protein; Provisional	89.75
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	89.72
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	89.31
PF14779	257	BBS1: Ciliary BBSome complex subunit 1	89.08
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	89.01
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	88.78
COG1520	370	FOG: WD40-like repeat [Function unknown]	88.76
PF14727	418	PHTB1_N: PTHB1 N-terminus	88.74
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	88.46
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	87.69
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	86.85
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	86.82
KOG2247	615	consensus WD40 repeat-containing protein [General	86.78
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	86.7
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	86.3
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	85.43
PRK13684	334	Ycf48-like protein; Provisional	85.3
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	84.56
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	83.73
PHA02790	480	Kelch-like protein; Provisional	83.41
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	82.99
KOG3616	1636	consensus Selective LIM binding factor [Transcript	82.87
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	82.76
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	82.52
PRK10115	686	protease 2; Provisional	81.95
COG4590	733	ABC-type uncharacterized transport system, permeas	81.11

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=8.7e-28  Score=138.15  Aligned_cols=111  Identities=20%  Similarity=0.353  Sum_probs=99.3

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCce----E
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV----H   76 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~----~   76 (112)
                      |.|++|+|+|..|++|+.|.++++||+.+..+..++++|..-|.|++|+|||+.+++|+.||.|++||.++++.+    .
T Consensus       118 Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~  197 (480)
T KOG0271|consen  118 VLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALR  197 (480)
T ss_pred             EEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccccccc
Confidence            578999999999999999999999999999999999999999999999999999999999999999999887654    3


Q ss_pred             EecCCCeEEEEee-----CCCEEEEEeCCCcEEEEECcCC
Q 045566           77 TQQLPDRCYALTV-----RYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        77 ~~~~~~~~~~~~~-----~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      .+...+.+++|.|     ..+.+++++.||.++|||+.-+
T Consensus       198 gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~  237 (480)
T KOG0271|consen  198 GHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG  237 (480)
T ss_pred             CcccceeEEeecccccCCCccceecccCCCCEEEEEccCc
Confidence            4455667788876     4568999999999999998754

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=2.3e-28  Score=141.33  Aligned_cols=111  Identities=19%  Similarity=0.249  Sum_probs=103.8

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |..++|+|+|++|++++.|.+-++||+.++..+....+|...|.+++|+++|.++++|+.|..-++||+++++++..+..
T Consensus       264 Vs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~g  343 (459)
T KOG0272|consen  264 VSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAG  343 (459)
T ss_pred             heeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecc
Confidence            46789999999999999999999999999999888899999999999999999999999999999999999999987766


Q ss_pred             C---CeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           81 P---DRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        81 ~---~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      +   +..+.|+|+|..+++|+.|++++|||+|.-
T Consensus       344 H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r  377 (459)
T KOG0272|consen  344 HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR  377 (459)
T ss_pred             cccceeeEeECCCceEEeecCCCCcEEEeeeccc
Confidence            4   468899999999999999999999999863

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.95  E-value=6.3e-27  Score=143.08  Aligned_cols=111  Identities=22%  Similarity=0.400  Sum_probs=102.2

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe--
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ--   78 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~--   78 (112)
                      |.|+.|+|+..++++|+.|.+|++||..++...+.+.+|.++|++++|+|+|.++++|+.|+.|.+||+.+++.+..+  
T Consensus       538 V~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~  617 (707)
T KOG0263|consen  538 VDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKG  617 (707)
T ss_pred             cceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhc
Confidence            468999999999999999999999999999999999999999999999999999999999999999999998766444  


Q ss_pred             -cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           79 -QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        79 -~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                       ...+.++.|+.+|..|++++.|..|++||+...
T Consensus       618 Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  618 HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             ccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence             445678999999999999999999999998753

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.94  E-value=1.9e-25  Score=135.36  Aligned_cols=112  Identities=29%  Similarity=0.425  Sum_probs=101.3

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCC-CCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLS-GGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      |.+++|+|+++++++++.|+++++||+.. +..+.++.+|...|++++|+|+++.+++|+.|+.|++||++++++...+.
T Consensus       206 v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~  285 (456)
T KOG0266|consen  206 VSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK  285 (456)
T ss_pred             eeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee
Confidence            57899999999999999999999999944 46778889999999999999999999999999999999999988776665


Q ss_pred             C---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           80 L---PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        80 ~---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      .   .+..++|.+++..+++++.|+.|++||+.+++
T Consensus       286 ~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~  321 (456)
T KOG0266|consen  286 GHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGS  321 (456)
T ss_pred             ccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCc
Confidence            4   45788899999999999999999999998864

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=1.2e-25  Score=130.33  Aligned_cols=111  Identities=26%  Similarity=0.332  Sum_probs=101.6

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |.+++|.|+|..+++|+.|..-++||++++..+..+.+|..+|..++|+|+|.++++|+.|+++++||++..+.+..+..
T Consensus       306 v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipA  385 (459)
T KOG0272|consen  306 VFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPA  385 (459)
T ss_pred             cceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceeccc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999998887776665


Q ss_pred             C---CeEEEEee-CCCEEEEEeCCCcEEEEECcCC
Q 045566           81 P---DRCYALTV-RYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        81 ~---~~~~~~~~-~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      +   +..+.|.| .|.+|++++.|+.+++|..++.
T Consensus       386 H~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~  420 (459)
T KOG0272|consen  386 HSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW  420 (459)
T ss_pred             ccchhhheEecccCCeEEEEcccCcceeeecCCCc
Confidence            4   35788998 6889999999999999987654

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=2e-24  Score=131.38  Aligned_cols=112  Identities=17%  Similarity=0.324  Sum_probs=97.5

Q ss_pred             CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCCC-------CcEEEeeccCCeeEEEEccCC-CEEEEeeCCCcEEEeeCCC
Q 045566            1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGG-------QPVTVAMHDAPIKEVAWIPEM-NLLATGSWDKTLKYWDTRQ   71 (112)
Q Consensus         1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~-------~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~i~~w~~~~   71 (112)
                      |.+++|+| ++++|++|+.|+.|++||+.+..       ++..+.+|...|.+++|+|++ .++++++.|+.|++||+++
T Consensus        78 V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t  157 (493)
T PTZ00421         78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER  157 (493)
T ss_pred             EEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCC
Confidence            57899999 88999999999999999987642       456778899999999999965 6899999999999999998


Q ss_pred             CCceEEecC---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           72 PNPVHTQQL---PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        72 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      ++.+..+..   .+..++|++++..+++++.|+.|++||+++++
T Consensus       158 g~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~  201 (493)
T PTZ00421        158 GKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT  201 (493)
T ss_pred             CeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc
Confidence            877666543   45788999999999999999999999999764

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.93  E-value=3.9e-25  Score=135.36  Aligned_cols=112  Identities=22%  Similarity=0.323  Sum_probs=104.2

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |.++.|+|-|-++|+++.|++-++|......+++.+.+|.+.|.|+.|+|+..++++|+.|+++++||+.++..++.+.+
T Consensus       496 VwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G  575 (707)
T KOG0263|consen  496 VWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG  575 (707)
T ss_pred             eeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999988877654


Q ss_pred             ---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           81 ---PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        81 ---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                         ++.+++|+|+|.+|++|+.|+.|.+||+.+++
T Consensus       576 H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~  610 (707)
T KOG0263|consen  576 HKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS  610 (707)
T ss_pred             CCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc
Confidence               56899999999999999999999999998763

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.93  E-value=1.7e-24  Score=120.16  Aligned_cols=112  Identities=25%  Similarity=0.414  Sum_probs=99.2

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |..+..+++|++.++++.|+.+++||+.+++..+.+.+|...|.+++|+++.+++++|+.|++|++|+............
T Consensus        66 v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~  145 (315)
T KOG0279|consen   66 VSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHED  145 (315)
T ss_pred             ecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecC
Confidence            45788899999999999999999999999999999999999999999999999999999999999999877655443333


Q ss_pred             C----CeEEEEeeC--CCEEEEEeCCCcEEEEECcCCC
Q 045566           81 P----DRCYALTVR--YPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        81 ~----~~~~~~~~~--~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      .    +.+++|+|+  ..++++++.|+.|++||+++.+
T Consensus       146 ~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~  183 (315)
T KOG0279|consen  146 SHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ  183 (315)
T ss_pred             CCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc
Confidence            2    478999998  6899999999999999998753

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.93  E-value=1.9e-24  Score=120.05  Aligned_cols=110  Identities=19%  Similarity=0.319  Sum_probs=97.7

Q ss_pred             CeeEEEcCC--CCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566            1 VLCSTWKDD--GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ   78 (112)
Q Consensus         1 v~~~~~~~~--~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~   78 (112)
                      |+|++|+|+  ...+++++.|++|++||+++-+....+.+|...++.++++|||...++|+.|+.+.+||++.++.+..+
T Consensus       151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl  230 (315)
T KOG0279|consen  151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL  230 (315)
T ss_pred             EEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec
Confidence            689999996  789999999999999999998888899999999999999999999999999999999999999998777


Q ss_pred             cC--CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           79 QL--PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        79 ~~--~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      ..  .+.+++|+|+...|+.+. +..|+|||+.++
T Consensus       231 ~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~  264 (315)
T KOG0279|consen  231 EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESK  264 (315)
T ss_pred             cCCCeEeeEEecCCceeEeecc-CCceEEEeccch
Confidence            65  457899999976666554 445999999865

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.93  E-value=5e-25  Score=127.45  Aligned_cols=111  Identities=20%  Similarity=0.346  Sum_probs=101.5

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |.+++|+|+...+++|++|+.++|||....+....+.+|...|.+++|+|...++++++.|..|++||.+++.++.++..
T Consensus       183 IRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~  262 (464)
T KOG0284|consen  183 IRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHG  262 (464)
T ss_pred             hheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhh
Confidence            57899999999999999999999999998888888999999999999999999999999999999999999998866543


Q ss_pred             ---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           81 ---PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        81 ---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                         .+..+.|.+++++|++++.|..++++|+|+.
T Consensus       263 HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m  296 (464)
T KOG0284|consen  263 HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM  296 (464)
T ss_pred             ccceEEEEEEcCCCCeeEEccCCceEEEEehhHh
Confidence               4567789999999999999999999999854

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.92  E-value=1.1e-23  Score=127.73  Aligned_cols=111  Identities=23%  Similarity=0.428  Sum_probs=100.4

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCc--eEEe
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP--VHTQ   78 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~--~~~~   78 (112)
                      |++++|+|+++.+++|+.|++|++||++++++...+..|.+.|++++|++++..+++++.|+.+++||+.++..  ....
T Consensus       249 v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~  328 (456)
T KOG0266|consen  249 VTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLL  328 (456)
T ss_pred             eEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecc
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999883  3333


Q ss_pred             c---C--CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           79 Q---L--PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        79 ~---~--~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      .   .  ....+.|+|++.+++++..|+.+++||++.+
T Consensus       329 ~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~  366 (456)
T KOG0266|consen  329 SGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG  366 (456)
T ss_pred             cCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC
Confidence            2   2  3577889999999999999999999999865

>PTZ00420 coronin; Provisional

Probab=99.92  E-value=5.1e-23  Score=126.49  Aligned_cols=112  Identities=12%  Similarity=0.271  Sum_probs=94.4

Q ss_pred             CeeEEEcCC-CCEEEEEcCCCcEEEEEcCCCC--------CcEEEeeccCCeeEEEEccCCCE-EEEeeCCCcEEEeeCC
Q 045566            1 VLCSTWKDD-GTTVFSGGCDKQVKMWPLLSGG--------QPVTVAMHDAPIKEVAWIPEMNL-LATGSWDKTLKYWDTR   70 (112)
Q Consensus         1 v~~~~~~~~-~~~l~~~~~~~~v~~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~i~~w~~~   70 (112)
                      |.+++|+|+ +.+|++|+.|+.|++|++.+..        +...+.+|...|.+++|+|++.. +++++.|+.|++||++
T Consensus        77 V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~  156 (568)
T PTZ00420         77 ILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIE  156 (568)
T ss_pred             EEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECC
Confidence            578999996 7899999999999999997542        23356789999999999998775 5788999999999999


Q ss_pred             CCCceEEec--CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           71 QPNPVHTQQ--LPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        71 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      +++.+..+.  ..+.++.|+++|.++++++.|+.|++||+++++
T Consensus       157 tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~  200 (568)
T PTZ00420        157 NEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE  200 (568)
T ss_pred             CCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCc
Confidence            887665443  346788999999999999999999999999864

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.91  E-value=7.7e-24  Score=121.33  Aligned_cols=111  Identities=21%  Similarity=0.338  Sum_probs=103.3

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |.|+++.|.+.+|++|+.|+++.|||+.+++...++.+|...|..+++++...++++++.|+.|+.||+...+.++.+..
T Consensus       154 Vr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhG  233 (460)
T KOG0285|consen  154 VRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHG  233 (460)
T ss_pred             EEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhcc
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999988877665


Q ss_pred             C---CeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           81 P---DRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        81 ~---~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      +   +.++.++|.-..+++|+.|..+++||+|+.
T Consensus       234 HlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr  267 (460)
T KOG0285|consen  234 HLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR  267 (460)
T ss_pred             ccceeEEEeccccceeEEecCCcceEEEeeeccc
Confidence            4   567888999999999999999999999974

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.91  E-value=6.7e-23  Score=114.67  Aligned_cols=111  Identities=29%  Similarity=0.411  Sum_probs=102.5

Q ss_pred             CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566            1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      |.+++++| +++.+++|+-|+..++||++.+...+++.+|+..|+++.|.|+|.-|++|+.|++.++||++..+.+..+.
T Consensus       189 V~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys  268 (343)
T KOG0286|consen  189 VMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS  268 (343)
T ss_pred             EEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec
Confidence            46789999 99999999999999999999999999999999999999999999999999999999999999988777664


Q ss_pred             C-----CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           80 L-----PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        80 ~-----~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      .     ++++++|+..|++|++|..|.++.+||.-.+
T Consensus       269 ~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~  305 (343)
T KOG0286|consen  269 HDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG  305 (343)
T ss_pred             cCcccCCceeEEEcccccEEEeeecCCceeEeecccc
Confidence            3     5688999999999999999999999997654

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.91  E-value=8.3e-23  Score=114.31  Aligned_cols=109  Identities=20%  Similarity=0.372  Sum_probs=100.5

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      .|+.|-+ ...|++++.|.+.-+||+++++....+.+|.+.|.++.++| +++.|++|+-|...++||++.+.+.+.++.
T Consensus       149 ScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~g  227 (343)
T KOG0286|consen  149 SCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEG  227 (343)
T ss_pred             EEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecc
Confidence            5677776 56778999999999999999999999999999999999999 999999999999999999999999888866


Q ss_pred             ---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           81 ---PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        81 ---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                         .++.+.|.|+|.-+++|+.|+.+++||+|..
T Consensus       228 hesDINsv~ffP~G~afatGSDD~tcRlyDlRaD  261 (343)
T KOG0286|consen  228 HESDINSVRFFPSGDAFATGSDDATCRLYDLRAD  261 (343)
T ss_pred             cccccceEEEccCCCeeeecCCCceeEEEeecCC
Confidence               4689999999999999999999999999974

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.91  E-value=4.9e-23  Score=126.68  Aligned_cols=109  Identities=23%  Similarity=0.389  Sum_probs=94.5

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE---
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT---   77 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~---   77 (112)
                      +++++++|||+++++|++|+.|++||...+.+..++..|.+.|+.+.|+..++.+++.+.||+|+.||+...+..++   
T Consensus       353 i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~  432 (893)
T KOG0291|consen  353 ITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS  432 (893)
T ss_pred             eeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999865432222   


Q ss_pred             --------------------------------------------ecCCCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           78 --------------------------------------------QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        78 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                                                                  ++.++..++|+|.+..|++++.|.+|++||+-
T Consensus       433 P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if  508 (893)
T KOG0291|consen  433 PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIF  508 (893)
T ss_pred             CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEee
Confidence                                                        22344567888888899999999999999863

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.90  E-value=1e-22  Score=112.03  Aligned_cols=110  Identities=22%  Similarity=0.274  Sum_probs=96.9

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCC--CcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG--QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ   78 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~   78 (112)
                      |+.+...|+++.|++++. ..|++||+++++  ++.++.+|...|+.+.|..+|+++++|++||++++||++...+.+.+
T Consensus        43 VNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~  121 (311)
T KOG0315|consen   43 VNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY  121 (311)
T ss_pred             eeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc
Confidence            567889999999998886 689999998766  46788999999999999999999999999999999999987655444


Q ss_pred             --cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           79 --QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        79 --~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                        ..+++.+.++|+..-|++|..+|.|++||+.+.
T Consensus       122 ~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~  156 (311)
T KOG0315|consen  122 QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN  156 (311)
T ss_pred             cCCCCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence              457789999999999999999999999999864

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=3.7e-23  Score=119.37  Aligned_cols=107  Identities=27%  Similarity=0.357  Sum_probs=99.0

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |+.+.|+||++++++++.|..|++|+.++++.+..+.+|-+.|..++|+.|.+++++|+.|.++++|++++.+....+..
T Consensus       370 Vn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpG  449 (480)
T KOG0271|consen  370 VNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPG  449 (480)
T ss_pred             eeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999887776664


Q ss_pred             ---CCeEEEEeeCCCEEEEEeCCCcEEEEE
Q 045566           81 ---PDRCYALTVRYPLMVVGTADRNLVVFN  107 (112)
Q Consensus        81 ---~~~~~~~~~~~~~~~~~~~d~~v~~~d  107 (112)
                         .+-.+.|+|+|..+++|+.|.-+++|.
T Consensus       450 h~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  450 HADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             CCceEEEEEecCCCceeecCCCceEEEeec
Confidence               345778899999999999999999994

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.90  E-value=8.7e-24  Score=124.23  Aligned_cols=112  Identities=22%  Similarity=0.447  Sum_probs=102.3

Q ss_pred             CeeEEEcC-CCCEEEEEcCCCcEEEEEcCC-CCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566            1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLS-GGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ   78 (112)
Q Consensus         1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~   78 (112)
                      |+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|..+.|+.+|..|++++.|+.+++||.++++++..+
T Consensus       217 vsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f  296 (503)
T KOG0282|consen  217 VSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRF  296 (503)
T ss_pred             cchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEE
Confidence            56888999 899999999999999999987 6778899999999999999999999999999999999999999999887


Q ss_pred             cCC--CeEEEEeeCC-CEEEEEeCCCcEEEEECcCCC
Q 045566           79 QLP--DRCYALTVRY-PLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        79 ~~~--~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      ...  ..++.|+|++ +.+++|+.|+.|+.||+|+++
T Consensus       297 ~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k  333 (503)
T KOG0282|consen  297 HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK  333 (503)
T ss_pred             ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH
Confidence            654  4688899987 789999999999999999874

>PTZ00421 coronin; Provisional

Probab=99.90  E-value=7.8e-22  Score=120.25  Aligned_cols=111  Identities=21%  Similarity=0.313  Sum_probs=93.9

Q ss_pred             CeeEEEcCCC-CEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566            1 VLCSTWKDDG-TTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         1 v~~~~~~~~~-~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      |.+++|+|++ +.|++++.|+.|++||+.+++....+..|...|.+++|+|++.++++++.|+.|++||+++++.+..+.
T Consensus       128 V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~  207 (493)
T PTZ00421        128 VGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE  207 (493)
T ss_pred             EEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe
Confidence            5689999975 699999999999999999888888888899999999999999999999999999999999988776654


Q ss_pred             CCC----eEEEEeeCCCEEEEEe----CCCcEEEEECcCC
Q 045566           80 LPD----RCYALTVRYPLMVVGT----ADRNLVVFNLQNP  111 (112)
Q Consensus        80 ~~~----~~~~~~~~~~~~~~~~----~d~~v~~~d~~~~  111 (112)
                      .+.    ....|.+++..+++++    .|+.|++||+++.
T Consensus       208 ~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~  247 (493)
T PTZ00421        208 AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM  247 (493)
T ss_pred             cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC
Confidence            432    3456777777777654    4789999999864

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.90  E-value=9.5e-23  Score=116.93  Aligned_cols=112  Identities=25%  Similarity=0.354  Sum_probs=102.2

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |..+++++-..++++++.|++|+.||+..++.++.+.+|-+.|.|++.+|.-..+++|+.|..+++||+++...+..+..
T Consensus       196 vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~G  275 (460)
T KOG0285|consen  196 VRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSG  275 (460)
T ss_pred             eeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecC
Confidence            35688999999999999999999999999999999999999999999999989999999999999999999988877654


Q ss_pred             ---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           81 ---PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        81 ---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                         ++..+.+.+....+++|+.|++|++||++.++
T Consensus       276 H~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agk  310 (460)
T KOG0285|consen  276 HTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGK  310 (460)
T ss_pred             CCCcceeEEeecCCCceEEecCCceEEEeeeccCc
Confidence               45677778888899999999999999999874

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.90  E-value=3.2e-22  Score=122.55  Aligned_cols=112  Identities=21%  Similarity=0.234  Sum_probs=103.3

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |+|++++|+.+.+++|+.|.+.++|+++.......+.+|...+.|+.|+|..+.+++++.|.+|++|.+.+..++.++.+
T Consensus       466 IN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eG  545 (775)
T KOG0319|consen  466 INCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEG  545 (775)
T ss_pred             ccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecC
Confidence            68999999999999999999999999998888889999999999999999999999999999999999999999999886


Q ss_pred             CC---eEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           81 PD---RCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        81 ~~---~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      +.   -...|-.++.++++++.||.+++|++++.+
T Consensus       546 H~~aVlra~F~~~~~qliS~~adGliKlWnikt~e  580 (775)
T KOG0319|consen  546 HTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE  580 (775)
T ss_pred             ccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh
Confidence            54   345677899999999999999999998763

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.89  E-value=5.6e-22  Score=111.39  Aligned_cols=111  Identities=20%  Similarity=0.405  Sum_probs=92.7

Q ss_pred             CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCC-c-EEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCce--
Q 045566            1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQ-P-VTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV--   75 (112)
Q Consensus         1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~-~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~--   75 (112)
                      |.+++|+| ....++.++.|++|++|++..... . .....|.+++.+++|+.+|..+++|+.|+.+++||+.+++..  
T Consensus        30 IS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v  109 (347)
T KOG0647|consen   30 ISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQV  109 (347)
T ss_pred             hheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeee
Confidence            57899999 556777899999999999976422 2 234568899999999999999999999999999999988654  


Q ss_pred             EEecCCCeEEEEeeCCC--EEEEEeCCCcEEEEECcCC
Q 045566           76 HTQQLPDRCYALTVRYP--LMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        76 ~~~~~~~~~~~~~~~~~--~~~~~~~d~~v~~~d~~~~  111 (112)
                      ..+..+++.+.|-+...  .|++|+.|.++++||+|..
T Consensus       110 ~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~  147 (347)
T KOG0647|consen  110 AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS  147 (347)
T ss_pred             eecccceeEEEEecCCCcceeEecccccceeecccCCC
Confidence            55667788888866544  8999999999999999975

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=6.7e-22  Score=113.27  Aligned_cols=111  Identities=27%  Similarity=0.416  Sum_probs=100.0

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccC---------------CCEEEEeeCCCcEEE
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPE---------------MNLLATGSWDKTLKY   66 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~~~~~~~~~~i~~   66 (112)
                      ..++.+.||..+++|+.|.++++|-+.+.+....+..|+.+|.|++|.|.               ++.+.+++.|++|++
T Consensus       239 r~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~  318 (406)
T KOG0295|consen  239 RMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKI  318 (406)
T ss_pred             EEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEE
Confidence            45778889999999999999999999999888889999999999999874               257889999999999


Q ss_pred             eeCCCCCceEEecCC---CeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           67 WDTRQPNPVHTQQLP---DRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        67 w~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      ||+.++.++.++..+   +..++|+|.|++++++..|+++++||+++++
T Consensus       319 wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~  367 (406)
T KOG0295|consen  319 WDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQ  367 (406)
T ss_pred             EeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccce
Confidence            999999999888665   4789999999999999999999999998864

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=2.2e-22  Score=122.05  Aligned_cols=110  Identities=23%  Similarity=0.349  Sum_probs=99.7

Q ss_pred             eeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEcc--CCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566            2 LCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP--EMNLLATGSWDKTLKYWDTRQPNPVHTQ   78 (112)
Q Consensus         2 ~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~i~~w~~~~~~~~~~~   78 (112)
                      -+++|+| |.+.+++++.|++|++|.+....+..++.+|+..|+|+.+-+  +.+++++|+.|..+++||.++..++.++
T Consensus       144 Mqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL  223 (794)
T KOG0276|consen  144 MQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL  223 (794)
T ss_pred             EEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHh
Confidence            4789999 778999999999999999999999999999999999999977  5679999999999999999999988877


Q ss_pred             cC---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           79 QL---PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        79 ~~---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      ..   .+....|+|.-+++++|+.||++++|+-.+.
T Consensus       224 eGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty  259 (794)
T KOG0276|consen  224 EGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY  259 (794)
T ss_pred             hcccccceEEEecCCCcEEEEecCCccEEEecCcce
Confidence            65   4567889999999999999999999987653

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.88  E-value=3.1e-23  Score=118.19  Aligned_cols=112  Identities=15%  Similarity=0.272  Sum_probs=103.5

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe-eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA-MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      |.|++|+.|...+++|+.||.+++|.+.++.+++.+. .|...|+|+.|+.|+.++++++.|.++++.-++.++++..+.
T Consensus       266 Vlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr  345 (508)
T KOG0275|consen  266 VLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR  345 (508)
T ss_pred             eEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc
Confidence            5799999999999999999999999999999999886 899999999999999999999999999999999999988877


Q ss_pred             CCC---eEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           80 LPD---RCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        80 ~~~---~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      .+.   +...|.++|..+++++.||+|++|+.++.+
T Consensus       346 GHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktte  381 (508)
T KOG0275|consen  346 GHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTE  381 (508)
T ss_pred             CccccccceEEcCCCCeEEEecCCccEEEecCcchh
Confidence            654   567889999999999999999999988754

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.88  E-value=1.3e-21  Score=115.20  Aligned_cols=112  Identities=23%  Similarity=0.423  Sum_probs=100.7

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCC---------CEEEEeeCCCcEEEeeCCC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEM---------NLLATGSWDKTLKYWDTRQ   71 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~~~~~~~~~~i~~w~~~~   71 (112)
                      |.++.|+|.+.+|++++.|+++++|+.........+..|...|..+.|+|.+         ..+++++.|.++++||...
T Consensus       362 V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~  441 (524)
T KOG0273|consen  362 VNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES  441 (524)
T ss_pred             eEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC
Confidence            6789999999999999999999999988777777888899999999999853         5688999999999999999


Q ss_pred             CCceEEec---CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           72 PNPVHTQQ---LPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        72 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      +.+++.+.   .++..++|+|+++++++|+.||.|.+|+.++++
T Consensus       442 gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~  485 (524)
T KOG0273|consen  442 GVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK  485 (524)
T ss_pred             CceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchh
Confidence            99988773   467889999999999999999999999998764

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.88  E-value=5.1e-21  Score=114.06  Aligned_cols=111  Identities=21%  Similarity=0.337  Sum_probs=96.5

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe---eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA---MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT   77 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~   77 (112)
                      |.|+.|+|||+++++.+.|+.+.+||-.+++.+..+.   .|.+.|..+.|+||+.++++++.|.++++||+.+.+.+.+
T Consensus       193 V~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t  272 (603)
T KOG0318|consen  193 VNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVST  272 (603)
T ss_pred             eeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEE
Confidence            6799999999999999999999999999999988886   8999999999999999999999999999999976653332


Q ss_pred             ec----------------------------------------------CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           78 QQ----------------------------------------------LPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        78 ~~----------------------------------------------~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      +.                                              ..++++..++++.++++|+.||.|.-||..++
T Consensus       273 ~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g  352 (603)
T KOG0318|consen  273 WPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSG  352 (603)
T ss_pred             eecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCc
Confidence            21                                              12357788888999999999999999998765

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.88  E-value=3.8e-21  Score=107.98  Aligned_cols=110  Identities=17%  Similarity=0.346  Sum_probs=92.6

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCC-CCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSG-GQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      |..+.|+|+|..|++|+.|..|.+|+...- +....+++|.++|..+.|.++++.+++++.|..++.||.++++.+..++
T Consensus        50 I~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k  129 (338)
T KOG0265|consen   50 IYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHK  129 (338)
T ss_pred             EEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhc
Confidence            567899999999999999999999996433 3345678999999999999999999999999999999999999999888


Q ss_pred             CCCeEEE-EeeC---CCEEEEEeCCCcEEEEECcC
Q 045566           80 LPDRCYA-LTVR---YPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        80 ~~~~~~~-~~~~---~~~~~~~~~d~~v~~~d~~~  110 (112)
                      .+...+. +.|.   ...+.+++.|+++++||+|+
T Consensus       130 ~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~  164 (338)
T KOG0265|consen  130 GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK  164 (338)
T ss_pred             cccceeeecCccccCCeEEEecCCCceEEEEeecc
Confidence            7764332 2332   34677788899999999994

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.88  E-value=5.9e-21  Score=105.18  Aligned_cols=109  Identities=21%  Similarity=0.351  Sum_probs=94.1

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec-
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ-   79 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~-   79 (112)
                      |.++.|..+|+.+++|++||+++|||++.....+.+. +.++|+++..+|+...+++|..+|.|++||+.+..+.+.+. 
T Consensus        86 VtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liP  164 (311)
T KOG0315|consen   86 VTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIP  164 (311)
T ss_pred             eEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCC
Confidence            5688999999999999999999999999855544444 77999999999999999999999999999998876554442 


Q ss_pred             ---CCCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           80 ---LPDRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        80 ---~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                         ..+.++...|+|..++.+...|++++|++-+
T Consensus       165 e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~  198 (311)
T KOG0315|consen  165 EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLN  198 (311)
T ss_pred             CCCcceeeEEEcCCCcEEEEecCCccEEEEEccC
Confidence               3457889999999999999999999999865

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=8.1e-21  Score=105.46  Aligned_cols=109  Identities=23%  Similarity=0.343  Sum_probs=94.9

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCC--CCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC-----
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSG--GQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN-----   73 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~-----   73 (112)
                      |.+++|+|.|++|++++.|.++-||.-..+  +.+.++.+|+..|.|++|+++|.++++++.|+.+-+|......     
T Consensus        64 VRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~  143 (312)
T KOG0645|consen   64 VRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECI  143 (312)
T ss_pred             eeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEE
Confidence            578999999999999999999999986544  4566889999999999999999999999999999999887443     


Q ss_pred             -ceEEecCCCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           74 -PVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        74 -~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                       .+..+...+..+.|+|....|++++.|.+|++|+-.
T Consensus       144 aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~  180 (312)
T KOG0645|consen  144 AVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDE  180 (312)
T ss_pred             eeeccccccccEEEEcCCcceeEEeccCCeEEEEeec
Confidence             234455567889999999999999999999999754

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=1.1e-21  Score=120.81  Aligned_cols=111  Identities=22%  Similarity=0.359  Sum_probs=98.6

Q ss_pred             CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCC----c
Q 045566            1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPN----P   74 (112)
Q Consensus         1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~----~   74 (112)
                      |++++|++ ...+|++|++||.|++||++..+...++.+....|..+.|+| .+..|+++..+|.+.+||++...    .
T Consensus       136 ~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k  215 (839)
T KOG0269|consen  136 ANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKK  215 (839)
T ss_pred             eeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHH
Confidence            56899999 567899999999999999999998888888888999999999 78899999999999999998764    3


Q ss_pred             eEEecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           75 VHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      +..+..++.++.|+|++.+|++|+.|+.|+|||+..+
T Consensus       216 ~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~  252 (839)
T KOG0269|consen  216 LTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDS  252 (839)
T ss_pred             hhcccCceEEEeecCCCceeeecCCCccEEEEeccCC
Confidence            3456778889999999999999999999999998754

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=3.2e-21  Score=105.61  Aligned_cols=111  Identities=17%  Similarity=0.288  Sum_probs=102.4

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |..+.|+-+|++.++|+.|.+|++|++..+..+.++.+|...|..++.+.+...+++|+.|+.+.+||+.+++..+.+..
T Consensus        20 V~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rg   99 (307)
T KOG0316|consen   20 VRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRG   99 (307)
T ss_pred             eEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeeccc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999998877765


Q ss_pred             ---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           81 ---PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        81 ---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                         .++.+.|+.....+++|+.|..+++||-|..
T Consensus       100 H~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~  133 (307)
T KOG0316|consen  100 HLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSR  133 (307)
T ss_pred             ccceeeEEEecCcceEEEeccccceeEEEEcccC
Confidence               4578899999999999999999999998753

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=7.4e-21  Score=105.00  Aligned_cols=111  Identities=23%  Similarity=0.406  Sum_probs=93.4

Q ss_pred             CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566            1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNPVHTQ   78 (112)
Q Consensus         1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~~~~~   78 (112)
                      |.++.|++ .++.+++++.|++|++|+...++.+.++.+|...|...+|+| .+..+++++.|+.+++||++.......+
T Consensus       107 V~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i  186 (311)
T KOG0277|consen  107 VYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSI  186 (311)
T ss_pred             eEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEE
Confidence            46788888 566788889999999999999999999999999999999999 7889999999999999999887655545


Q ss_pred             cCCC-e--EEEEee-CCCEEEEEeCCCcEEEEECcCC
Q 045566           79 QLPD-R--CYALTV-RYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        79 ~~~~-~--~~~~~~-~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      ..+. .  ++.|+. +...+++|+.|+.|+.||+|+.
T Consensus       187 ~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~  223 (311)
T KOG0277|consen  187 EAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL  223 (311)
T ss_pred             EeccceeEeecccccCCcEEEecCCCceEEEEehhhc
Confidence            5543 3  344433 5678999999999999999875

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=3.5e-21  Score=118.88  Aligned_cols=109  Identities=17%  Similarity=0.265  Sum_probs=95.4

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      |..++|+. ..+|++++.|.+|++|++...+++..+. |...|+|++|+| |.++|++|+-|+.+++|++...+......
T Consensus       372 ILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D  449 (712)
T KOG0283|consen  372 ILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND  449 (712)
T ss_pred             heeccccc-CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh
Confidence            56889985 6688899999999999998777777665 999999999999 89999999999999999998887765443


Q ss_pred             --CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           80 --LPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        80 --~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                        .-++++++.|+|+..++|+.+|.+++|+.+..
T Consensus       450 l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~l  483 (712)
T KOG0283|consen  450 LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGL  483 (712)
T ss_pred             hhhhheeEEeccCCceEEEEEeccEEEEEEccCC
Confidence              34689999999999999999999999998653

>PTZ00420 coronin; Provisional

Probab=99.87  E-value=4.4e-20  Score=113.78  Aligned_cols=109  Identities=16%  Similarity=0.280  Sum_probs=88.7

Q ss_pred             CeeEEEcCCCCE-EEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566            1 VLCSTWKDDGTT-VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         1 v~~~~~~~~~~~-l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      |.+++|+|++.. +++++.|+.|++||+++++....+. +...|.+++|+|+|.++++++.|+.+++||+++++.+..+.
T Consensus       128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~  206 (568)
T PTZ00420        128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFH  206 (568)
T ss_pred             EEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence            568999998875 5789999999999999887766665 56789999999999999999999999999999988776665


Q ss_pred             CCC---eE-----EEEeeCCCEEEEEeCCC----cEEEEECcC
Q 045566           80 LPD---RC-----YALTVRYPLMVVGTADR----NLVVFNLQN  110 (112)
Q Consensus        80 ~~~---~~-----~~~~~~~~~~~~~~~d~----~v~~~d~~~  110 (112)
                      .+.   ..     ..|++++.++++++.|+    .|++||+++
T Consensus       207 gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~  249 (568)
T PTZ00420        207 IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN  249 (568)
T ss_pred             cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence            432   11     12347788899888774    799999985

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=1.8e-21  Score=120.13  Aligned_cols=109  Identities=19%  Similarity=0.416  Sum_probs=92.7

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCC--------------------------------C------------------
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLS--------------------------------G------------------   30 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~--------------------------------~------------------   30 (112)
                      |.++.|+++|++||+|+.|+.|+||.+..                                .                  
T Consensus       270 Iw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~  349 (712)
T KOG0283|consen  270 IWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVL  349 (712)
T ss_pred             EEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCcccc
Confidence            56899999999999999999999997644                                0                  


Q ss_pred             ----------CCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCC--CeEEEEee-CCCEEEEE
Q 045566           31 ----------GQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP--DRCYALTV-RYPLMVVG   97 (112)
Q Consensus        31 ----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~   97 (112)
                                ++...+.+|.+.|..+.|+.+ .+|++++.|.++++|++....+++.+...  +++++|+| +.+++++|
T Consensus       350 ~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSG  428 (712)
T KOG0283|consen  350 LPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISG  428 (712)
T ss_pred             CCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeec
Confidence                      122345678889999999975 48889999999999999988888887665  58999999 67899999


Q ss_pred             eCCCcEEEEECcC
Q 045566           98 TADRNLVVFNLQN  110 (112)
Q Consensus        98 ~~d~~v~~~d~~~  110 (112)
                      +-|++++||++..
T Consensus       429 SLD~KvRiWsI~d  441 (712)
T KOG0283|consen  429 SLDGKVRLWSISD  441 (712)
T ss_pred             ccccceEEeecCc
Confidence            9999999999764

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.87  E-value=9.5e-22  Score=114.09  Aligned_cols=111  Identities=22%  Similarity=0.356  Sum_probs=94.8

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEee-ccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCc---eE
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAM-HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP---VH   76 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~---~~   76 (112)
                      |.++.|++++.++++|+.+|.|++|+..... +..+.. |...|++++|+|+...|++++.|+.|++||....+.   +.
T Consensus       141 Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~  219 (464)
T KOG0284|consen  141 VRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLR  219 (464)
T ss_pred             ceeEEEccCCCEEEEcCCCceEEecccchhh-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheec
Confidence            6789999999999999999999999975433 334444 458999999999888999999999999999977654   34


Q ss_pred             EecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           77 TQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      .+...++++.|+|....+++++.|..|++||.++++
T Consensus       220 GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~  255 (464)
T KOG0284|consen  220 GHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS  255 (464)
T ss_pred             cCCCCcceeccCCccceeEEccCCceeEeecCCCcc
Confidence            455577899999999999999999999999999874

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.87  E-value=3.2e-20  Score=104.42  Aligned_cols=110  Identities=62%  Similarity=1.116  Sum_probs=100.4

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCC--CEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEM--NLLATGSWDKTLKYWDTRQPNPVHTQ   78 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~i~~w~~~~~~~~~~~   78 (112)
                      |.+++|+.+|..+++|+.|+++++||+.++ ....+..|..+|.++.|-+..  ..+++|+.|.++++||.+...++...
T Consensus        75 vL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~  153 (347)
T KOG0647|consen   75 VLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATL  153 (347)
T ss_pred             eEEEEEccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeee
Confidence            578999999999999999999999999988 456677899999999998744  48999999999999999999999999


Q ss_pred             cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           79 QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      ..+.++.+.+.-.+.++++..++.|.+|+|+++
T Consensus       154 ~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~  186 (347)
T KOG0647|consen  154 QLPERVYAADVLYPMAVVATAERHIAVYNLENP  186 (347)
T ss_pred             eccceeeehhccCceeEEEecCCcEEEEEcCCC
Confidence            999999999888899999999999999999775

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.87  E-value=1.1e-20  Score=110.49  Aligned_cols=107  Identities=22%  Similarity=0.327  Sum_probs=96.3

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      +++.+|+|||..|.+|..|+.|++||+..+.....+++|.++|..++|+.+|.++++++.|+.|++||+|..+....+..
T Consensus       350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l  429 (506)
T KOG0289|consen  350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQL  429 (506)
T ss_pred             eEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeec
Confidence            36889999999999999999999999999998889999999999999999999999999999999999998876665533


Q ss_pred             ----CCeEEEEeeCCCEEEEEeCCCcEEEEE
Q 045566           81 ----PDRCYALTVRYPLMVVGTADRNLVVFN  107 (112)
Q Consensus        81 ----~~~~~~~~~~~~~~~~~~~d~~v~~~d  107 (112)
                          ++..+.|+..|.+++.++.|=.|++++
T Consensus       430 ~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  430 DEKKEVNSLSFDQSGTYLGIAGSDLQVYICK  460 (506)
T ss_pred             cccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence                467899999999999998887777776

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.86  E-value=4.7e-20  Score=118.29  Aligned_cols=111  Identities=21%  Similarity=0.366  Sum_probs=95.3

Q ss_pred             CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566            1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNPVHTQ   78 (112)
Q Consensus         1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~~~~~   78 (112)
                      |.+++|++ ++.++++++.|+.|++||+.+++.+..+..|...|.+++|+| ++.++++++.|+.|++||+++...+..+
T Consensus       535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~  614 (793)
T PLN00181        535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI  614 (793)
T ss_pred             eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence            35788987 578999999999999999998888888889999999999997 7889999999999999999988777665


Q ss_pred             cC--CCeEEEEe-eCCCEEEEEeCCCcEEEEECcCC
Q 045566           79 QL--PDRCYALT-VRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        79 ~~--~~~~~~~~-~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      ..  .+.++.|. +++..+++|+.|+.|++||++++
T Consensus       615 ~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~  650 (793)
T PLN00181        615 KTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNP  650 (793)
T ss_pred             ecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence            44  34556664 46889999999999999999864

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.86  E-value=1.4e-20  Score=108.58  Aligned_cols=109  Identities=25%  Similarity=0.498  Sum_probs=90.1

Q ss_pred             CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCC--cEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC---c
Q 045566            1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQ--PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN---P   74 (112)
Q Consensus         1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~---~   74 (112)
                      |..++|+| ....|++|+.|+.|+|||++.+..  ....+.|.+.|+-+.|+....++++|+.+|++++||+++-+   +
T Consensus       260 VEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~p  339 (440)
T KOG0302|consen  260 VEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQP  339 (440)
T ss_pred             hhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCc
Confidence            34689999 567889999999999999987732  33447899999999999987799999999999999998643   3


Q ss_pred             e---EEecCCCeEEEEeeCC-CEEEEEeCCCcEEEEECc
Q 045566           75 V---HTQQLPDRCYALTVRY-PLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        75 ~---~~~~~~~~~~~~~~~~-~~~~~~~~d~~v~~~d~~  109 (112)
                      +   ..++.+++++.|+|.. ..+++++.|..|.+||+.
T Consensus       340 VA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  340 VATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             ceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence            3   3445678999999864 578888999999999985

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=2.2e-21  Score=121.61  Aligned_cols=111  Identities=18%  Similarity=0.327  Sum_probs=103.1

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |..++|+|...++.++-.+|.|++||.+.+..+..+..|.++|..+.|+|.+++|++|+.|..|++|+.++.+++.++.+
T Consensus        12 vKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~G   91 (1202)
T KOG0292|consen   12 VKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLG   91 (1202)
T ss_pred             ccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhcc
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999998877766


Q ss_pred             C---CeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           81 P---DRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        81 ~---~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      +   ++...|++..+++++++.|.+|+||+..+.
T Consensus        92 HlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr  125 (1202)
T KOG0292|consen   92 HLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR  125 (1202)
T ss_pred             ccceeEEeeccCCCceEEEccCCCeEEEEeccCC
Confidence            5   478889999999999999999999998765

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.86  E-value=2.5e-20  Score=109.84  Aligned_cols=109  Identities=20%  Similarity=0.388  Sum_probs=93.0

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE---
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT---   77 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~---   77 (112)
                      |++++|+.+|..|++|+.||.+++|+ ..+..+.++..|.++|.++.|+..|.++++++.|+++.+||..++...+.   
T Consensus       238 VT~L~Wn~~G~~LatG~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~  316 (524)
T KOG0273|consen  238 VTSLDWNNDGTLLATGSEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEF  316 (524)
T ss_pred             cceEEecCCCCeEEEeecCcEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeee
Confidence            68999999999999999999999999 45778888889999999999999999999999999999999865532111   


Q ss_pred             -----------------------------------------ecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           78 -----------------------------------------QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        78 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                                                               +..++.++.|+|.+..|++++.|+++++|....
T Consensus       317 ~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~  390 (524)
T KOG0273|consen  317 HSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ  390 (524)
T ss_pred             ccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC
Confidence                                                     111235788888999999999999999998654

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.86  E-value=6e-20  Score=113.42  Aligned_cols=111  Identities=21%  Similarity=0.302  Sum_probs=100.3

Q ss_pred             CeeEEEcCCCCEEEEEcCC-CcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566            1 VLCSTWKDDGTTVFSGGCD-KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      |..++|+..|.+++.|+.. |++.+|+......+...++|...+++++++|||+++++|+.|+.|++||...+-++.++.
T Consensus       310 I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt  389 (893)
T KOG0291|consen  310 ILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT  389 (893)
T ss_pred             eeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec
Confidence            4578899999999998764 799999998888888889999999999999999999999999999999999999998886


Q ss_pred             CC---CeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           80 LP---DRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        80 ~~---~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      .+   ++.+.|+..++.+++.+.||+|+.||+...
T Consensus       390 eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY  424 (893)
T KOG0291|consen  390 EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY  424 (893)
T ss_pred             cCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence            54   578899999999999999999999998764

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=2.4e-20  Score=117.07  Aligned_cols=109  Identities=18%  Similarity=0.283  Sum_probs=101.7

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |..++|+|++.++++|+.|-.|++|+..+.+++.++.+|...|..+.|+++.+++++++.|.+|++|+..+.+++..+.+
T Consensus        54 VRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltG  133 (1202)
T KOG0292|consen   54 VRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTG  133 (1202)
T ss_pred             cceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEec
Confidence            56799999999999999999999999999999999999999999999999999999999999999999999999988877


Q ss_pred             CC---eEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           81 PD---RCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        81 ~~---~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                      +.   -+..|+|....+++++-|.+|++||+.
T Consensus       134 HnHYVMcAqFhptEDlIVSaSLDQTVRVWDis  165 (1202)
T KOG0292|consen  134 HNHYVMCAQFHPTEDLIVSASLDQTVRVWDIS  165 (1202)
T ss_pred             CceEEEeeccCCccceEEEecccceEEEEeec
Confidence            64   356789999999999999999999975

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.85  E-value=5.3e-21  Score=113.98  Aligned_cols=112  Identities=18%  Similarity=0.414  Sum_probs=88.8

Q ss_pred             CeeEEEcCC-CCEEEEEcCCCcEEEEEcCCCCCc-EEEe-----eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC
Q 045566            1 VLCSTWKDD-GTTVFSGGCDKQVKMWPLLSGGQP-VTVA-----MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN   73 (112)
Q Consensus         1 v~~~~~~~~-~~~l~~~~~~~~v~~~~~~~~~~~-~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~   73 (112)
                      ++|.+|+|. ...+++++.|+++++|++...+.- ..+.     +..-+++..+|+++++.+++|+.||.|.+|+.....
T Consensus       271 lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~  350 (641)
T KOG0772|consen  271 LTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRT  350 (641)
T ss_pred             eeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcc
Confidence            468899995 467899999999999999765532 2222     234568899999999999999999999999975432


Q ss_pred             --ce----EEecC--CCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           74 --PV----HTQQL--PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        74 --~~----~~~~~--~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                        +.    ..+..  .++++.|+++|++|++-+.|..+++||+|+++
T Consensus       351 v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k  397 (641)
T KOG0772|consen  351 VRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK  397 (641)
T ss_pred             cccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence              11    11222  56899999999999999999999999999864

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=2.3e-19  Score=101.18  Aligned_cols=111  Identities=17%  Similarity=0.282  Sum_probs=94.6

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCC--------------------------------------------CcEEE
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG--------------------------------------------QPVTV   36 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~--------------------------------------------~~~~~   36 (112)
                      |+++.|+++|..++++++|..+++||..+++                                            .++.+
T Consensus        17 i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF   96 (311)
T KOG1446|consen   17 INSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYF   96 (311)
T ss_pred             eeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEc
Confidence            5789999999999999999999999975432                                            23345


Q ss_pred             eeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCC-CeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           37 AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP-DRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        37 ~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      .+|...|.+++.+|-+..+++++.|++|++||++..++...+... ....+|+|.|-+++++.....|++||+|..
T Consensus        97 ~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~  172 (311)
T KOG1446|consen   97 PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSF  172 (311)
T ss_pred             CCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEeccc
Confidence            678899999999998899999999999999999988877666554 356789999999999988889999999875

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.85  E-value=2.9e-20  Score=104.45  Aligned_cols=111  Identities=23%  Similarity=0.334  Sum_probs=97.1

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCC-EEEEeeCCCcEEEeeCCCCCceEEe-
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDTRQPNPVHTQ-   78 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~i~~w~~~~~~~~~~~-   78 (112)
                      |-.+.|.++++.+++++.|.+++.||.++++.....+.|...++.+.-..-|. ++.+++.|+++++||+++..+++.+ 
T Consensus        93 VM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~  172 (338)
T KOG0265|consen   93 VMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE  172 (338)
T ss_pred             eEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc
Confidence            34678999999999999999999999999999999999999999988555444 5567888999999999999888888 


Q ss_pred             -cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           79 -QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        79 -~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                       +.+..++.|...+..+.+|+-|+.|++||+|..
T Consensus       173 ~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~  206 (338)
T KOG0265|consen  173 NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKN  206 (338)
T ss_pred             cceeEEEEEecccccceeeccccCceeeeccccC
Confidence             456678888888899999999999999999865

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.84  E-value=4.1e-20  Score=108.00  Aligned_cols=110  Identities=30%  Similarity=0.392  Sum_probs=90.0

Q ss_pred             CeeEEEcC-CCCEEEEEcCCCcEEEEEcCC--CCCcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCC-ce
Q 045566            1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLS--GGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPN-PV   75 (112)
Q Consensus         1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~-~~   75 (112)
                      |..++|++ +...|++++.|+.+.|||+++  .++......|.+++.|++|+| ++..+++|+.|++|.+||+|+.+ ++
T Consensus       230 VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~l  309 (422)
T KOG0264|consen  230 VEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPL  309 (422)
T ss_pred             eehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCc
Confidence            45688999 567889999999999999994  455556778999999999999 77889999999999999999864 45


Q ss_pred             EEecC---CCeEEEEeeC-CCEEEEEeCCCcEEEEECcC
Q 045566           76 HTQQL---PDRCYALTVR-YPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        76 ~~~~~---~~~~~~~~~~-~~~~~~~~~d~~v~~~d~~~  110 (112)
                      +.+..   .+..+.|+|. ...+++++.|+.+.+||+..
T Consensus       310 h~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~  348 (422)
T KOG0264|consen  310 HTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR  348 (422)
T ss_pred             eeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence            55544   3456778885 45788899999999999863

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.84  E-value=2.2e-19  Score=105.19  Aligned_cols=111  Identities=19%  Similarity=0.261  Sum_probs=96.2

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEee--ccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAM--HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ   78 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~   78 (112)
                      |+.+..+|.|.+|++++.|+..-+.|++++..+.....  ..-.+++.+|+|||..|.+|..|+.+++||+.++.....+
T Consensus       306 V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~F  385 (506)
T KOG0289|consen  306 VTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKF  385 (506)
T ss_pred             ceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccC
Confidence            45678899999999999999999999998887665543  2345899999999999999999999999999987766555


Q ss_pred             c---CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           79 Q---LPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        79 ~---~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      .   .++..+.|+.+|.++++++.|+.|++||+|..
T Consensus       386 pght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl  421 (506)
T KOG0289|consen  386 PGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL  421 (506)
T ss_pred             CCCCCceeEEEeccCceEEEEEecCCeEEEEEehhh
Confidence            4   46789999999999999999999999999974

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=1.4e-19  Score=103.98  Aligned_cols=99  Identities=25%  Similarity=0.399  Sum_probs=91.2

Q ss_pred             CEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCC---CeEEEE
Q 045566           11 TTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP---DRCYAL   87 (112)
Q Consensus        11 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~---~~~~~~   87 (112)
                      .++.+++.|+++++||+.++.++.++.+|.+.|..++|+|.|++++++.+|+++++||+++.++....+.+   +.++.|
T Consensus       305 ~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDf  384 (406)
T KOG0295|consen  305 QVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDF  384 (406)
T ss_pred             cEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEec
Confidence            58899999999999999999999999999999999999999999999999999999999999988877654   367888


Q ss_pred             eeCCCEEEEEeCCCcEEEEECc
Q 045566           88 TVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        88 ~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                      +.+..++++|+-|..+++|.-|
T Consensus       385 h~~~p~VvTGsVdqt~KvwEcr  406 (406)
T KOG0295|consen  385 HKTAPYVVTGSVDQTVKVWECR  406 (406)
T ss_pred             CCCCceEEeccccceeeeeecC
Confidence            8888999999999999999743

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.84  E-value=7.4e-19  Score=100.98  Aligned_cols=110  Identities=15%  Similarity=0.259  Sum_probs=100.2

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |.+++.+|+.+++++|+.|..-.+|++.++..+..+.+|+..|+++.|+.+|.++++|+.+|.+++|...++.....+..
T Consensus        67 vFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~  146 (399)
T KOG0296|consen   67 VFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQ  146 (399)
T ss_pred             eEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeec
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999887777643


Q ss_pred             C---CeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           81 P---DRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        81 ~---~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      .   ..=+.|+|.+..++.|+.||.+-+|.+.+
T Consensus       147 e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~  179 (399)
T KOG0296|consen  147 EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPS  179 (399)
T ss_pred             ccCceEEEEecccccEEEeecCCCcEEEEECCC
Confidence            3   34578899999999999999999999876

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.84  E-value=8.3e-20  Score=105.99  Aligned_cols=112  Identities=21%  Similarity=0.351  Sum_probs=96.7

Q ss_pred             CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCC-------CCcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCC
Q 045566            1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSG-------GQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQ   71 (112)
Q Consensus         1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~   71 (112)
                      |..++|+| +...+|+|++|.+|.+|.+..+       ++...+.+|...|--++|+| -.+.+++++.|..|.+|++.+
T Consensus        84 vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~t  163 (472)
T KOG0303|consen   84 VLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGT  163 (472)
T ss_pred             ccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccC
Confidence            45788999 6778999999999999998754       34567889999999999999 456788999999999999999


Q ss_pred             CCceEEecCC--CeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           72 PNPVHTQQLP--DRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        72 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      +..+..+..+  +.+++|+.+|.++++.+.|..|++||.++++
T Consensus       164 geali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~  206 (472)
T KOG0303|consen  164 GEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT  206 (472)
T ss_pred             CceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCc
Confidence            9877766654  4678899999999999999999999999874

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.84  E-value=1.3e-18  Score=98.88  Aligned_cols=111  Identities=26%  Similarity=0.435  Sum_probs=95.9

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |.+++|+|+++.+++++.++.+.+|++.+.+....+..|...+..+.|.|++..+++++.++.+.+|++.+.+.+..+..
T Consensus        12 i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~   91 (289)
T cd00200          12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTG   91 (289)
T ss_pred             EEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEec
Confidence            57899999999999999999999999988887777888888999999999999999999999999999988665555433


Q ss_pred             ---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           81 ---PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        81 ---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                         ....+.+.+++.++++++.++.+.+||++++
T Consensus        92 ~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  125 (289)
T cd00200          92 HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG  125 (289)
T ss_pred             cCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc
Confidence               4567888888888888888999999998754

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=1.3e-19  Score=99.33  Aligned_cols=110  Identities=24%  Similarity=0.435  Sum_probs=87.3

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCC--CceEEec
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP--NPVHTQQ   79 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~--~~~~~~~   79 (112)
                      ..++.+.++..+++|+.|..+.+||+.+++..+.+.+|.+.|+.++|+.+...+++|+.|..+++||.+..  ++++.+.
T Consensus        63 lD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQild  142 (307)
T KOG0316|consen   63 LDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILD  142 (307)
T ss_pred             eeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhh
Confidence            45666778889999999999999999999999999999999999999999999999999999999998764  3444442


Q ss_pred             C-CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           80 L-PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        80 ~-~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      . ....+.+.-.+.-+++|+.||+++.||+|.|
T Consensus       143 ea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G  175 (307)
T KOG0316|consen  143 EAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKG  175 (307)
T ss_pred             hhcCceeEEEecccEEEeeccCCcEEEEEeecc
Confidence            2 2233444445556666777777777776655

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.83  E-value=8.9e-20  Score=112.10  Aligned_cols=107  Identities=17%  Similarity=0.323  Sum_probs=98.1

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |.|+.|+|..+.++++|.|.+|+||.+.+..++.++.+|...|....|-.++.++++++.||.+++|++++..+.+.+..
T Consensus       508 vw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~  587 (775)
T KOG0319|consen  508 VWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDA  587 (775)
T ss_pred             eEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhh
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999888765


Q ss_pred             CC---eEEEEeeCCCEEEEEeCCCcEEEEE
Q 045566           81 PD---RCYALTVRYPLMVVGTADRNLVVFN  107 (112)
Q Consensus        81 ~~---~~~~~~~~~~~~~~~~~d~~v~~~d  107 (112)
                      +.   ..++.++....+++|+.||.|.+|.
T Consensus       588 H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  588 HNDRVWALSVSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             ccceeEEEeecCccceeEecCCCeEEEEee
Confidence            43   4566677788999999999999995

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=1.5e-19  Score=102.56  Aligned_cols=110  Identities=19%  Similarity=0.327  Sum_probs=93.0

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCC
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP   81 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~   81 (112)
                      .|+.|++-|.++|+|+.||.|.+||+.+......+..|..+|++++|+++|+.+++++.|..+.+||+..+.+++.+..+
T Consensus        27 ~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~  106 (405)
T KOG1273|consen   27 ECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD  106 (405)
T ss_pred             ceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEcc
Confidence            58899999999999999999999999998888889999999999999999999999999999999999877644332210


Q ss_pred             --C-----------------------------------------------eEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           82 --D-----------------------------------------------RCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        82 --~-----------------------------------------------~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                        +                                               ....|++.|+++++|...|.+.++|..+.
T Consensus       107 spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~  185 (405)
T KOG1273|consen  107 SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL  185 (405)
T ss_pred             CccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchh
Confidence              0                                               11235667889999999999999998764

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=1.7e-19  Score=99.68  Aligned_cols=110  Identities=22%  Similarity=0.437  Sum_probs=93.6

Q ss_pred             eeEEEcC-CCCEEEEEcCCCcEEEEEcCCC-CCcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566            2 LCSTWKD-DGTTVFSGGCDKQVKMWPLLSG-GQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNPVHTQ   78 (112)
Q Consensus         2 ~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~~~~~   78 (112)
                      ..++|++ ..+.+++++.||.+++||+... +++..++.|...|.++.|++ ....+++++.|++|++|+..-++.+.++
T Consensus        64 fdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf  143 (311)
T KOG0277|consen   64 FDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF  143 (311)
T ss_pred             eEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEee
Confidence            4689999 4578899999999999997543 46677889999999999998 7778899999999999999999999988


Q ss_pred             cCCCe---EEEEeeC-CCEEEEEeCCCcEEEEECcCC
Q 045566           79 QLPDR---CYALTVR-YPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        79 ~~~~~---~~~~~~~-~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      ..+..   ...|+|. ++.+++++.|+.+++||++.+
T Consensus       144 ~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~  180 (311)
T KOG0277|consen  144 NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP  180 (311)
T ss_pred             cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC
Confidence            77653   4567774 678999999999999999864

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.83  E-value=9.4e-20  Score=103.41  Aligned_cols=112  Identities=16%  Similarity=0.210  Sum_probs=97.2

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEE---eeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTV---AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT   77 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~   77 (112)
                      |.+++|+|.|.++++|.+...+++||+++.++-...   ..|.+.|+++.+++.+++.++++.||.|++||--..+++..
T Consensus       219 vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t  298 (430)
T KOG0640|consen  219 VRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRT  298 (430)
T ss_pred             eeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHH
Confidence            578999999999999999999999999887764432   46889999999999999999999999999999888888766


Q ss_pred             ecC-----CCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           78 QQL-----PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        78 ~~~-----~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      +..     .+.+..|..+++++++.+.|..+++|.+.+++
T Consensus       299 ~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R  338 (430)
T KOG0640|consen  299 IGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR  338 (430)
T ss_pred             HHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence            532     33566788999999999999999999998763

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.83  E-value=1.5e-18  Score=111.50  Aligned_cols=110  Identities=15%  Similarity=0.295  Sum_probs=89.4

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCC----C----CcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSG----G----QPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQ   71 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~----~----~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~   71 (112)
                      |.+++|+|+++++++|+.|+.|++|+....    .    +...+ .+...+.+++|++ .+.++++++.|+.|++||+.+
T Consensus       486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~  564 (793)
T PLN00181        486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR  564 (793)
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC
Confidence            568999999999999999999999997532    1    11222 2356789999987 578999999999999999998


Q ss_pred             CCceEEecC---CCeEEEEee-CCCEEEEEeCCCcEEEEECcCC
Q 045566           72 PNPVHTQQL---PDRCYALTV-RYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        72 ~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      .+.+..+..   .+..+.|+| ++.++++++.|+.|++||++++
T Consensus       565 ~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~  608 (793)
T PLN00181        565 SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG  608 (793)
T ss_pred             CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC
Confidence            877665543   457888986 6789999999999999999875

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=1.6e-18  Score=96.46  Aligned_cols=109  Identities=24%  Similarity=0.468  Sum_probs=90.0

Q ss_pred             eeEEEcCC-CCEEEEEcCCCcEEEEEcCCCCCcE---EE-eeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCC--Cc
Q 045566            2 LCSTWKDD-GTTVFSGGCDKQVKMWPLLSGGQPV---TV-AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP--NP   74 (112)
Q Consensus         2 ~~~~~~~~-~~~l~~~~~~~~v~~~~~~~~~~~~---~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~--~~   74 (112)
                      -.++|+|. |..|++|+.|..|++|+...+....   .+ .+|+..|.+++|+|.|+++++++.|.++.+|.-...  ++
T Consensus        18 W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efec   97 (312)
T KOG0645|consen   18 WSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFEC   97 (312)
T ss_pred             EEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeE
Confidence            47899997 8899999999999999987533211   12 368899999999999999999999999999975533  34


Q ss_pred             eEEecC---CCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           75 VHTQQL---PDRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        75 ~~~~~~---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      +..++.   .+.+++|+++|++|++++.|+.|-||.+..
T Consensus        98 v~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~de  136 (312)
T KOG0645|consen   98 VATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDE  136 (312)
T ss_pred             EeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecC
Confidence            444444   568999999999999999999999998764

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.82  E-value=6e-20  Score=108.37  Aligned_cols=110  Identities=19%  Similarity=0.313  Sum_probs=96.8

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCC-CEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEM-NLLATGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      |..++|+++|..+.+++.|+.+++||+++++....+. ....+.|+.|+|++ ..|++|+.|+.|+.||.++++.++.+.
T Consensus       261 Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd  339 (503)
T KOG0282|consen  261 VRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD  339 (503)
T ss_pred             hhhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH
Confidence            4578999999999999999999999999999988775 34567999999976 788999999999999999998776664


Q ss_pred             C---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           80 L---PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        80 ~---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      .   .+..+.|-+++..+++.+.|+.++||+.+.+
T Consensus       340 ~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~  374 (503)
T KOG0282|consen  340 RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIP  374 (503)
T ss_pred             hhhhheeeeEEccCCceEeeeccCccEEEEEcCCC
Confidence            4   4577889999999999999999999998765

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.82  E-value=1.5e-20  Score=107.43  Aligned_cols=111  Identities=18%  Similarity=0.382  Sum_probs=97.7

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcE--------EEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV--------TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN   73 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~   73 (112)
                      .|..|+|||+++++|+-||.+.+|+.-+++...        .+..+..+|.|+.|+.|...+++|+.||.|++|.++++.
T Consensus       217 EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~  296 (508)
T KOG0275|consen  217 ECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQ  296 (508)
T ss_pred             hheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecch
Confidence            578899999999999999999999988776432        234567899999999999999999999999999999999


Q ss_pred             ceEEec----CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           74 PVHTQQ----LPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        74 ~~~~~~----~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      +++.+.    ..+.++.|+.++..+++++.|..+++.-++.|+
T Consensus       297 ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK  339 (508)
T KOG0275|consen  297 CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK  339 (508)
T ss_pred             HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch
Confidence            987664    356789999999999999999999999888764

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.82  E-value=1.2e-18  Score=104.14  Aligned_cols=110  Identities=23%  Similarity=0.404  Sum_probs=95.7

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCc--EEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCce---E
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQP--VTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV---H   76 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~---~   76 (112)
                      .+++++|++..+++|++|+.|++|.+...+..  ..+..|.+++++++++|++.+++++...+.+.+||+.+.+..   .
T Consensus       447 s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w  526 (603)
T KOG0318|consen  447 SAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRW  526 (603)
T ss_pred             ceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceeccee
Confidence            58899999999999999999999999865532  355679999999999999999999999999999999876642   1


Q ss_pred             E-ecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           77 T-QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        77 ~-~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      . +...+.+++|+|+..++++|+.|-.|.+|++..|
T Consensus       527 ~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP  562 (603)
T KOG0318|consen  527 AFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKP  562 (603)
T ss_pred             eeeeeeEEEEEeCCCceEEEeccccceEEEEEccCh
Confidence            2 3446789999999999999999999999999876

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.82  E-value=3.5e-19  Score=112.74  Aligned_cols=110  Identities=21%  Similarity=0.344  Sum_probs=95.3

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCC------------------CCCcEEEeeccCCeeEEEEccCCCEEEEeeCCC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLS------------------GGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDK   62 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~   62 (112)
                      |+|+.|+|||++||+|++|..|.+|....                  .+....+.+|...|..++|+|++.++++++.|+
T Consensus        72 v~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~Dn  151 (942)
T KOG0973|consen   72 VNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDN  151 (942)
T ss_pred             eeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccc
Confidence            67999999999999999999999998762                  012345678999999999999999999999999


Q ss_pred             cEEEeeCCCCCceEEec---CCCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           63 TLKYWDTRQPNPVHTQQ---LPDRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        63 ~i~~w~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      .|.+|+.++...+..+.   ..+..+.|+|-|+++++-+.|++|++|++.+
T Consensus       152 sViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d  202 (942)
T KOG0973|consen  152 SVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD  202 (942)
T ss_pred             eEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEccc
Confidence            99999998886655554   4567899999999999999999999998643

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.82  E-value=3.5e-18  Score=97.18  Aligned_cols=111  Identities=24%  Similarity=0.355  Sum_probs=95.7

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |.++.|+++++++++++.++.+.+|++.+.+....+..|...+.++.|+|++.++++++.++.+.+||+++.+.+..+..
T Consensus        96 i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~  175 (289)
T cd00200          96 VSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTG  175 (289)
T ss_pred             EEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEec
Confidence            46789999988999888899999999987877777778888999999999988888888899999999987766555433


Q ss_pred             ---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           81 ---PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        81 ---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                         ....+.++++++.+++++.++.+++||++++
T Consensus       176 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~  209 (289)
T cd00200         176 HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG  209 (289)
T ss_pred             CccccceEEECCCcCEEEEecCCCcEEEEECCCC
Confidence               4578899999989999999999999999764

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.82  E-value=4.5e-19  Score=103.59  Aligned_cols=110  Identities=20%  Similarity=0.370  Sum_probs=96.0

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCC---cEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ---PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT   77 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~   77 (112)
                      |.-+.|+++|++||+++.|.+.-+|.+..-..   ..++.+|..+|..+.|+||.+++++++.+..+.+||..++...+.
T Consensus       227 VWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~  306 (519)
T KOG0293|consen  227 VWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHL  306 (519)
T ss_pred             EEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhh
Confidence            34688999999999999999999998765444   457789999999999999999999999999999999999887765


Q ss_pred             ecC----CCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           78 QQL----PDRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        78 ~~~----~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      +..    ...+.+|.|++..+++|+.|+.+..||+.-
T Consensus       307 y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg  343 (519)
T KOG0293|consen  307 YPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG  343 (519)
T ss_pred             cccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc
Confidence            543    457889999999999999999999999763

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.82  E-value=2.6e-18  Score=98.81  Aligned_cols=112  Identities=21%  Similarity=0.402  Sum_probs=98.2

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |+++.|+-+|.+||+|..+|.|++|...++.....+...-..+.=+.|+|.+..++.|+.||.+.+|.+.++...+.+..
T Consensus       109 Vt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~G  188 (399)
T KOG0296|consen  109 VTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSG  188 (399)
T ss_pred             eEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecC
Confidence            67999999999999999999999999998888777766667788899999999999999999999999988655444443


Q ss_pred             ---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           81 ---PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        81 ---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                         +.++-.|.|+|+.++++..||+|++||+.+++
T Consensus       189 h~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~  223 (399)
T KOG0296|consen  189 HNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQ  223 (399)
T ss_pred             CCCCcccccccCCCceEEEEecCceEEEEecCCCc
Confidence               45677899999999999999999999999874

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.82  E-value=2e-19  Score=106.20  Aligned_cols=111  Identities=23%  Similarity=0.375  Sum_probs=92.2

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      |.+++|-.||++++.|...|.|+++|+.+...++.+..|+.+++.+.|+| +...+++|+.|+.+++||+.+......+.
T Consensus        71 v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~  150 (487)
T KOG0310|consen   71 VYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS  150 (487)
T ss_pred             eeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec
Confidence            46789999999999999999999999665555677889999999999999 56677888899999999998876533333


Q ss_pred             CC---CeEEEEeeC-CCEEEEEeCCCcEEEEECcCC
Q 045566           80 LP---DRCYALTVR-YPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        80 ~~---~~~~~~~~~-~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      .+   +++.+++|. +..+++|+.||.|++||+|..
T Consensus       151 ~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~  186 (487)
T KOG0310|consen  151 GHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL  186 (487)
T ss_pred             CCcceeEeeccccCCCeEEEecCCCceEEEEEeccC
Confidence            32   467888875 558899999999999999864

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.81  E-value=1.7e-18  Score=102.36  Aligned_cols=110  Identities=24%  Similarity=0.355  Sum_probs=90.6

Q ss_pred             CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCC-CceEE
Q 045566            1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQP-NPVHT   77 (112)
Q Consensus         1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~-~~~~~   77 (112)
                      |..+.|+| ++..+++|+.|+.+++||+.+......+.+|++.|.|.+++| .+..+++|+.||.|++||.+.. ..+..
T Consensus       113 v~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~e  192 (487)
T KOG0310|consen  113 VHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVE  192 (487)
T ss_pred             eeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEE
Confidence            34577899 456778889999999999988776557889999999999999 5557899999999999999987 55555


Q ss_pred             ec--CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           78 QQ--LPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        78 ~~--~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      +.  .++..+.+-|.|..+++++.+ .+++||+-+|
T Consensus       193 lnhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G  227 (487)
T KOG0310|consen  193 LNHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTG  227 (487)
T ss_pred             ecCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCC
Confidence            54  467788888999888888654 7999999755

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.81  E-value=1.5e-18  Score=98.35  Aligned_cols=109  Identities=17%  Similarity=0.220  Sum_probs=94.6

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCC--EEEEeeCCCcEEEeeCCCCCceEE--
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMN--LLATGSWDKTLKYWDTRQPNPVHT--   77 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~i~~w~~~~~~~~~~--   77 (112)
                      ++++.  +++++++|+.|.+|++||++.......+..|.+.|+++.|.+...  ++++|..||.|.+|+...-..+..  
T Consensus        47 tavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK  124 (362)
T KOG0294|consen   47 TALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLK  124 (362)
T ss_pred             eEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeec
Confidence            45555  689999999999999999999999998989999999999988554  899999999999999877655544  


Q ss_pred             -ecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           78 -QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        78 -~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                       +...++.++++|.+.+.++.+.|+.+++||+-+|+
T Consensus       125 ~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr  160 (362)
T KOG0294|consen  125 AHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR  160 (362)
T ss_pred             ccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence             44567889999999999999999999999987764

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.80  E-value=5.9e-18  Score=94.29  Aligned_cols=111  Identities=19%  Similarity=0.228  Sum_probs=95.0

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      ++.+.++.+|.+|++|+.|....+|--.+++.+-++.+|.+.|.|+..+-+.+.+++|+.|..+++||+++++.+...+.
T Consensus        13 lTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~   92 (327)
T KOG0643|consen   13 LTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT   92 (327)
T ss_pred             cceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeec
Confidence            46788999999999999999999998778999999999999999999999999999999999999999998875433221


Q ss_pred             C--------------------------------------------------------CeEEEEeeCCCEEEEEeCCCcEE
Q 045566           81 P--------------------------------------------------------DRCYALTVRYPLMVVGTADRNLV  104 (112)
Q Consensus        81 ~--------------------------------------------------------~~~~~~~~~~~~~~~~~~d~~v~  104 (112)
                      +                                                        .+...|.|.++.+++|..||.|.
T Consensus        93 ~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is  172 (327)
T KOG0643|consen   93 NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSIS  172 (327)
T ss_pred             CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEE
Confidence            1                                                        12456677778899999999999


Q ss_pred             EEECcCC
Q 045566          105 VFNLQNP  111 (112)
Q Consensus       105 ~~d~~~~  111 (112)
                      +||.+++
T Consensus       173 ~~da~~g  179 (327)
T KOG0643|consen  173 IYDARTG  179 (327)
T ss_pred             EEEcccC
Confidence            9998876

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.80  E-value=3.9e-19  Score=100.95  Aligned_cols=111  Identities=22%  Similarity=0.361  Sum_probs=93.5

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCC------------C------CCcEEEeeccCCeeEEEEccCCCEEEEeeCCCc
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLS------------G------GQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKT   63 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~------------~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~   63 (112)
                      .+.+|+|||.++++|+.|..|++.|++.            +      -.++++..|..+|+++.|+|....+++++.|++
T Consensus       116 R~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~t  195 (430)
T KOG0640|consen  116 RAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNT  195 (430)
T ss_pred             eeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCe
Confidence            4678999999999999999999999861            1      124566789999999999999999999999999


Q ss_pred             EEEeeCCCCCceEEe-----cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           64 LKYWDTRQPNPVHTQ-----QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        64 i~~w~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      ++++|+......+.+     ..+++++.|+|.|+++++|.....+++||+++.|
T Consensus       196 vKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Q  249 (430)
T KOG0640|consen  196 VKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQ  249 (430)
T ss_pred             EEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEecccee
Confidence            999999765433222     2367899999999999999999999999998754

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=9.4e-20  Score=112.04  Aligned_cols=112  Identities=22%  Similarity=0.322  Sum_probs=102.4

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |.++.|+++..+++.|+.+|.|++||+...+..+++.+|...+.++.|+|-+.+++.|+.|..+.+||.+...+.+.+..
T Consensus        73 IeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s  152 (825)
T KOG0267|consen   73 IESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS  152 (825)
T ss_pred             ceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC
Confidence            56899999999999999999999999999998899999999999999999999999999999999999998888877765


Q ss_pred             C---CeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           81 P---DRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        81 ~---~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      +   +..+.|.|+|.+++.++.|..+++||+..|+
T Consensus       153 ~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk  187 (825)
T KOG0267|consen  153 HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK  187 (825)
T ss_pred             CcceeEEEeecCCCceeeccCCcceeeeecccccc
Confidence            4   4678899999999999999999999997663

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=2.2e-18  Score=103.74  Aligned_cols=110  Identities=34%  Similarity=0.539  Sum_probs=91.1

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEcc-CCCEEEEee--CCCcEEEeeCCCCCceEE
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP-EMNLLATGS--WDKTLKYWDTRQPNPVHT   77 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~--~~~~i~~w~~~~~~~~~~   77 (112)
                      |..+.|++++.++|+|+.|+.+.|||....++...+..|.+.|..++|+| ....+|+|+  .|+.|++||..+++.+..
T Consensus       304 VCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~  383 (484)
T KOG0305|consen  304 VCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS  383 (484)
T ss_pred             eeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecc
Confidence            45689999999999999999999999988889999999999999999999 777888875  489999999876652211


Q ss_pred             ec----------------------------------------------CCCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           78 QQ----------------------------------------------LPDRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        78 ~~----------------------------------------------~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      ..                                              ..+-.++++|++..+++++.|.++++|++-.
T Consensus       384 vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  384 VDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD  462 (484)
T ss_pred             cccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence            10                                              0123577889999999999999999998643

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.80  E-value=2.9e-18  Score=95.14  Aligned_cols=111  Identities=14%  Similarity=0.186  Sum_probs=99.1

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCce---EEe
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV---HTQ   78 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~---~~~   78 (112)
                      .-++|+-++..++.....|.|.|......+++..+..|.....|+.|+|+|++|++|+.|-.+.+||+...-+.   ..+
T Consensus       151 ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRl  230 (313)
T KOG1407|consen  151 NEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRL  230 (313)
T ss_pred             eeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccc
Confidence            45788888888888888899999999999999999999999999999999999999999999999999876554   445


Q ss_pred             cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           79 QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      ..+++.+.|+.+|++|++++.|..|-|=++++|+
T Consensus       231 dwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd  264 (313)
T KOG1407|consen  231 DWPVRTLSFSHDGRMLASASEDHFIDIAEVETGD  264 (313)
T ss_pred             cCceEEEEeccCcceeeccCccceEEeEecccCC
Confidence            6689999999999999999999999888888764

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.79  E-value=1.1e-18  Score=107.99  Aligned_cols=111  Identities=21%  Similarity=0.353  Sum_probs=90.6

Q ss_pred             CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCC-cEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCc--eE
Q 045566            1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQ-PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP--VH   76 (112)
Q Consensus         1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~--~~   76 (112)
                      |..+.|+| .+..++++.+.|.+++||++.... ...+..|.++|.|+.|+|++.++++|+.|+.|++||..+.+.  ..
T Consensus       179 iRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~  258 (839)
T KOG0269|consen  179 IRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKH  258 (839)
T ss_pred             hhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcccee
Confidence            46789999 678999999999999999997765 456789999999999999999999999999999999976543  33


Q ss_pred             Ee--cCCCeEEEEeeCCC-EEEEEeC--CCcEEEEECcCC
Q 045566           77 TQ--QLPDRCYALTVRYP-LMVVGTA--DRNLVVFNLQNP  111 (112)
Q Consensus        77 ~~--~~~~~~~~~~~~~~-~~~~~~~--d~~v~~~d~~~~  111 (112)
                      .+  ..++..+.|.|..+ +|++++.  |-.|+|||++.+
T Consensus       259 tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP  298 (839)
T KOG0269|consen  259 TINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP  298 (839)
T ss_pred             EEeecceeeeeeeccCccchhhhhhccccceEEEEeeccc
Confidence            33  24667889998655 4555543  778999999875

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.79  E-value=9.1e-19  Score=100.81  Aligned_cols=107  Identities=23%  Similarity=0.399  Sum_probs=91.9

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |.|+.+  |...+++|..|.+|++||..+......+.+|.+.|.|+.|.  .+.+++|+.|.+|++||+++++++..+..
T Consensus       200 VYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlih  275 (499)
T KOG0281|consen  200 VYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIH  275 (499)
T ss_pred             eEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhh
Confidence            456666  56778999999999999998888888999999999999995  56999999999999999999999887765


Q ss_pred             CC-eEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           81 PD-RCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        81 ~~-~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      +. ..+.+..+..++++++.|.++.+||+..+
T Consensus       276 HceaVLhlrf~ng~mvtcSkDrsiaVWdm~sp  307 (499)
T KOG0281|consen  276 HCEAVLHLRFSNGYMVTCSKDRSIAVWDMASP  307 (499)
T ss_pred             hcceeEEEEEeCCEEEEecCCceeEEEeccCc
Confidence            54 45556667789999999999999999875

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.79  E-value=2.1e-17  Score=93.24  Aligned_cols=109  Identities=33%  Similarity=0.629  Sum_probs=92.8

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      +.+++|.+ ...+++|+.||+|+.+|+.+++.. .+-.|..++.|+.+.+....+++|++|+.|++||.++......+..
T Consensus        57 lL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~  134 (323)
T KOG1036|consen   57 LLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ  134 (323)
T ss_pred             eeeeeccC-CceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc
Confidence            35677875 567789999999999999877664 3455999999999999888899999999999999998666666666


Q ss_pred             CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           81 PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      .....+.+-.++.|++|+.+..+.+||+|+.
T Consensus       135 ~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~  165 (323)
T KOG1036|consen  135 GKKVYCMDVSGNRLVVGTSDRKVLIYDLRNL  165 (323)
T ss_pred             CceEEEEeccCCEEEEeecCceEEEEEcccc
Confidence            6677888889999999999999999999975

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.79  E-value=5.2e-18  Score=98.06  Aligned_cols=110  Identities=23%  Similarity=0.442  Sum_probs=89.8

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCc---eEE
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP---VHT   77 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~---~~~   77 (112)
                      |.++.|++ ...+++++.|.+|+.||+.+++...++. ....++|+..+|...++++|+.|+.+++||++++.-   .+.
T Consensus       263 Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s  340 (423)
T KOG0313|consen  263 VSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQS  340 (423)
T ss_pred             eeeEEEcC-CCceEeecccceEEEEEeecccceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEe
Confidence            46788987 7788999999999999999998877766 345789999999999999999999999999998641   223


Q ss_pred             ecC---CCeEEEEeeCC-CEEEEEeCCCcEEEEECcCCC
Q 045566           78 QQL---PDRCYALTVRY-PLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        78 ~~~---~~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      +..   -+..+.|+|.. .+|++++.|+++++||+|+.+
T Consensus       341 ~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k  379 (423)
T KOG0313|consen  341 LIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK  379 (423)
T ss_pred             eecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence            322   34677888854 578889999999999999753

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.78  E-value=4.2e-19  Score=102.15  Aligned_cols=104  Identities=22%  Similarity=0.372  Sum_probs=90.1

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCC
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP   81 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~   81 (112)
                      +.+.|  +.+++++++.|.++++|++.+.+.++++.+|+..|-|+.+  .++++++|+.|.+|++||...+.+++.+.++
T Consensus       324 NvVdf--d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGH  399 (499)
T KOG0281|consen  324 NVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGH  399 (499)
T ss_pred             eeecc--ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhch
Confidence            45555  4569999999999999999999999999999999999888  4889999999999999999999888776664


Q ss_pred             C---eEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           82 D---RCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        82 ~---~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      .   +++.|  +.+.+++|..||+|++||+.++
T Consensus       400 EeLvRciRF--d~krIVSGaYDGkikvWdl~aa  430 (499)
T KOG0281|consen  400 EELVRCIRF--DNKRIVSGAYDGKIKVWDLQAA  430 (499)
T ss_pred             HHhhhheee--cCceeeeccccceEEEEecccc
Confidence            3   45555  6788999999999999999765

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.78  E-value=3.6e-18  Score=100.03  Aligned_cols=110  Identities=25%  Similarity=0.529  Sum_probs=88.7

Q ss_pred             eEEEcCC-CCEEEEEcCCCcEEEEEcCCCCC-------cEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCC--
Q 045566            3 CSTWKDD-GTTVFSGGCDKQVKMWPLLSGGQ-------PVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQ--   71 (112)
Q Consensus         3 ~~~~~~~-~~~l~~~~~~~~v~~~~~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~--   71 (112)
                      .++|++. .-.+++++.|+.+.+||+.....       ...+.+|...|..++|++ ...+|++++.|+.+.+||.|+  
T Consensus       182 glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~  261 (422)
T KOG0264|consen  182 GLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT  261 (422)
T ss_pred             ccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC
Confidence            5788884 45789999999999999864332       335678999999999999 677889999999999999994  


Q ss_pred             CCc---eEEecCCCeEEEEee-CCCEEEEEeCCCcEEEEECcCCC
Q 045566           72 PNP---VHTQQLPDRCYALTV-RYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        72 ~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      .++   ...+..++.++.|+| ++..|++|+.|++|.+||+|+.+
T Consensus       262 ~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~  306 (422)
T KOG0264|consen  262 SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN  306 (422)
T ss_pred             CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc
Confidence            333   234455678999988 45688899999999999999863

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.78  E-value=5.9e-17  Score=88.89  Aligned_cols=106  Identities=15%  Similarity=0.372  Sum_probs=83.6

Q ss_pred             CeeEEEcCCCCEEEEE--cCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeC---CCcEEEeeCCCCCce
Q 045566            1 VLCSTWKDDGTTVFSG--GCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW---DKTLKYWDTRQPNPV   75 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~i~~w~~~~~~~~   75 (112)
                      |.+++|+|+|+.+++.  ..+..+.+||++ .+.+..+  ....+..+.|+|+|++++.++.   .|.+.+||.++.+.+
T Consensus        62 I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i  138 (194)
T PF08662_consen   62 IHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKI  138 (194)
T ss_pred             eEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEe
Confidence            5789999999987654  456789999986 4444444  3467789999999999998864   466999999988877


Q ss_pred             EEecCC-CeEEEEeeCCCEEEEEeC------CCcEEEEECc
Q 045566           76 HTQQLP-DRCYALTVRYPLMVVGTA------DRNLVVFNLQ  109 (112)
Q Consensus        76 ~~~~~~-~~~~~~~~~~~~~~~~~~------d~~v~~~d~~  109 (112)
                      ...... ...+.|+|+|++++++..      |..++||+..
T Consensus       139 ~~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  139 STFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             eccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence            766543 467899999999998864      7788999864

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=1.3e-17  Score=101.83  Aligned_cols=111  Identities=23%  Similarity=0.367  Sum_probs=95.3

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCC-CCcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSG-GQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNPVHTQ   78 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~~~~~   78 (112)
                      |.|++.+|...++.+++.|-.|++||-... .+.+++.+|...|.+++|.| |.+.|++++.|++|++|.+....+..++
T Consensus       100 IR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl  179 (794)
T KOG0276|consen  100 IRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTL  179 (794)
T ss_pred             eeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceee
Confidence            578999999999999999999999997643 45678899999999999999 8889999999999999999888776666


Q ss_pred             cC---CCeEEEEee--CCCEEEEEeCCCcEEEEECcCC
Q 045566           79 QL---PDRCYALTV--RYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        79 ~~---~~~~~~~~~--~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      ..   .++++.+-+  +.+++++|+.|..+++||..+.
T Consensus       180 ~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk  217 (794)
T KOG0276|consen  180 EGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK  217 (794)
T ss_pred             eccccCcceEEeccCCCcceEEecCCCceEEEeecchH
Confidence            54   456666644  4579999999999999998764

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.78  E-value=9.2e-18  Score=102.49  Aligned_cols=111  Identities=18%  Similarity=0.348  Sum_probs=94.4

Q ss_pred             CeeEEE-cCCCCEEEEEcCCCcEEEEEcCCCCC----------cEEEe-eccCCeeEEEEccCCCEEEEeeCCCcEEEee
Q 045566            1 VLCSTW-KDDGTTVFSGGCDKQVKMWPLLSGGQ----------PVTVA-MHDAPIKEVAWIPEMNLLATGSWDKTLKYWD   68 (112)
Q Consensus         1 v~~~~~-~~~~~~l~~~~~~~~v~~~~~~~~~~----------~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~   68 (112)
                      |.|+++ .++...+++|+.|+.|.+||++++..          ...+. ++..++.+++.++.+..+++|+..+.+++||
T Consensus       120 Vkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wD  199 (735)
T KOG0308|consen  120 VKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWD  199 (735)
T ss_pred             heeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEec
Confidence            568888 77889999999999999999986622          11222 6788999999999999999999999999999


Q ss_pred             CCCCCceEEecC---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           69 TRQPNPVHTQQL---PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        69 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      .++.+.+..+.+   .++.+..+.+|..+++++.||.|++||+...
T Consensus       200 prt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ  245 (735)
T KOG0308|consen  200 PRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ  245 (735)
T ss_pred             cccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc
Confidence            999987766554   5678889999999999999999999999754

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.78  E-value=1.4e-17  Score=96.25  Aligned_cols=111  Identities=24%  Similarity=0.467  Sum_probs=94.1

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcC-------------------------CCCCcEEEeeccCCeeEEEEccCCCEE
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLL-------------------------SGGQPVTVAMHDAPIKEVAWIPEMNLL   55 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~-------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~   55 (112)
                      |-+++..++|..+++|+.|..+.+|+..                         +..++.++.+|.++|.++.|++ ...+
T Consensus       196 V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~  274 (423)
T KOG0313|consen  196 VDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVI  274 (423)
T ss_pred             eeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCce
Confidence            4578888999999999999999999932                         1134557789999999999998 6688


Q ss_pred             EEeeCCCcEEEeeCCCCCceEEecCCC--eEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           56 ATGSWDKTLKYWDTRQPNPVHTQQLPD--RCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        56 ~~~~~~~~i~~w~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      .+++.|++|+.||+.+++.+..+..+.  .++..++...++++|+.|..+++||.|++.
T Consensus       275 yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~  333 (423)
T KOG0313|consen  275 YSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD  333 (423)
T ss_pred             EeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCC
Confidence            999999999999999998887775543  566777888899999999999999999874

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.78  E-value=2e-17  Score=93.32  Aligned_cols=108  Identities=15%  Similarity=0.338  Sum_probs=92.2

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCc--eEEe
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP--VHTQ   78 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~--~~~~   78 (112)
                      |+++.|+|.+..|++++.||.+++|+.........+. |..++.+.+|.+ ...+++|+.||.|+.+|+.+++.  +..+
T Consensus        16 IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~igth   93 (323)
T KOG1036|consen   16 ISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQIGTH   93 (323)
T ss_pred             eeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcceeeccC
Confidence            5789999999999999999999999998775544444 889999999987 45788999999999999988764  4556


Q ss_pred             cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           79 QLPDRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      ..+++++...+-...+++|+.|++|++||.|.
T Consensus        94 ~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~  125 (323)
T KOG1036|consen   94 DEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN  125 (323)
T ss_pred             CCceEEEEeeccCCeEEEcccCccEEEEeccc
Confidence            66778888888788999999999999999984

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.77  E-value=5.7e-19  Score=108.69  Aligned_cols=111  Identities=20%  Similarity=0.313  Sum_probs=100.9

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec-
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ-   79 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~-   79 (112)
                      +.++.|+|-+.+.+.|+.|..+.+||.+...+...+.+|...+..+.|+|+|.+++.++.|..+++||...++....++ 
T Consensus       115 ~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~  194 (825)
T KOG0267|consen  115 ITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKS  194 (825)
T ss_pred             cceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccc
Confidence            3578899999999999999999999999999999999999999999999999999999999999999999888886665 


Q ss_pred             --CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           80 --LPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        80 --~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                        ..+..+-|+|..-.+..|+.|+.+++||+++.
T Consensus       195 ~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf  228 (825)
T KOG0267|consen  195 HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF  228 (825)
T ss_pred             ccccccccccCchhhhhccCCCCceeeeecccee
Confidence              55667778999889999999999999999864

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.77  E-value=1.2e-17  Score=98.00  Aligned_cols=109  Identities=25%  Similarity=0.447  Sum_probs=93.1

Q ss_pred             eEEEcCC-CCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCC---CCceEE
Q 045566            3 CSTWKDD-GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQ---PNPVHT   77 (112)
Q Consensus         3 ~~~~~~~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~---~~~~~~   77 (112)
                      +++|+.. .+.||+|+.|.+|.+||+.++++..++..|...|.+++|+| .+..+++|+.|+++.+.|.|.   ......
T Consensus       248 ~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk  327 (463)
T KOG0270|consen  248 ALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK  327 (463)
T ss_pred             HHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE
Confidence            4556553 46889999999999999999999999999999999999999 778899999999999999984   334456


Q ss_pred             ecCCCeEEEEeeCC-CEEEEEeCCCcEEEEECcCC
Q 045566           78 QQLPDRCYALTVRY-PLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        78 ~~~~~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~  111 (112)
                      +...+..+.|++.. ..++++..||.++-+|+|++
T Consensus       328 ~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~  362 (463)
T KOG0270|consen  328 FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP  362 (463)
T ss_pred             eccceEEEEecCCCceeEEEecCCceEEeeecCCC
Confidence            67788889998865 46778888999999999986

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.77  E-value=2.1e-17  Score=91.86  Aligned_cols=108  Identities=19%  Similarity=0.315  Sum_probs=95.0

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec--
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ--   79 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~--   79 (112)
                      .|+.|+|+|++||+|+.|..+.+||+...-+.+.+..+.-+|..+.|+-+|+++++++.|+.|-+=+++++..+..++  
T Consensus       193 icI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~  272 (313)
T KOG1407|consen  193 ICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCE  272 (313)
T ss_pred             EEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeecc
Confidence            478999999999999999999999998888888999999999999999999999999999999999999999887765  


Q ss_pred             CCCeEEEEeeCCCEEEEEeCC---------CcEEEEECc
Q 045566           80 LPDRCYALTVRYPLMVVGTAD---------RNLVVFNLQ  109 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~d---------~~v~~~d~~  109 (112)
                      .+...++|+|...+|+-++.|         |.+++|-+.
T Consensus       273 ~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  273 GPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             CCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence            456789999999888777664         557776554

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.77  E-value=7e-18  Score=104.47  Aligned_cols=108  Identities=23%  Similarity=0.403  Sum_probs=98.8

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |.|+..+|+++.+++|+.|..|++|-+.-+.+-..+..|...|.++.|-|+...|++++.|+.++-||-..-..++.+..
T Consensus       553 V~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~  632 (888)
T KOG0306|consen  553 VLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDG  632 (888)
T ss_pred             eeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeecc
Confidence            57999999999999999999999999998888888889999999999999999999999999999999887777766655


Q ss_pred             ---CCeEEEEeeCCCEEEEEeCCCcEEEEEC
Q 045566           81 ---PDRCYALTVRYPLMVVGTADRNLVVFNL  108 (112)
Q Consensus        81 ---~~~~~~~~~~~~~~~~~~~d~~v~~~d~  108 (112)
                         .+.+++..|+|.++++++.|.+|++|..
T Consensus       633 H~~ev~cLav~~~G~~vvs~shD~sIRlwE~  663 (888)
T KOG0306|consen  633 HHSEVWCLAVSPNGSFVVSSSHDKSIRLWER  663 (888)
T ss_pred             chheeeeeEEcCCCCeEEeccCCceeEeeec
Confidence               4578899999999999999999999974

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=1.8e-17  Score=97.71  Aligned_cols=111  Identities=17%  Similarity=0.218  Sum_probs=92.8

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCC---------C
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR---------Q   71 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~---------~   71 (112)
                      |.|++-+|+|.+++.|...+.+++|.+.++..+..+..|-..|+|+.|+-|+.++++|+.||.|.+|++-         +
T Consensus        84 v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~  163 (476)
T KOG0646|consen   84 VHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHS  163 (476)
T ss_pred             eeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCC
Confidence            4688899999999999999999999999999999899999999999999999999999999999999752         2


Q ss_pred             CCceEEecC---CCeEEEEee--CCCEEEEEeCCCcEEEEECcCC
Q 045566           72 PNPVHTQQL---PDRCYALTV--RYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        72 ~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      .++++.+..   +++.+...+  ....+++++.|..+++||+..+
T Consensus       164 ~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g  208 (476)
T KOG0646|consen  164 VKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG  208 (476)
T ss_pred             ccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc
Confidence            234444433   344555444  3468999999999999999865

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.76  E-value=3.2e-18  Score=102.37  Aligned_cols=111  Identities=24%  Similarity=0.432  Sum_probs=87.4

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCC--cE-EEeeccC--CeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC-c
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ--PV-TVAMHDA--PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN-P   74 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~--~~-~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~-~   74 (112)
                      ++.++|+|+++.+|.|+.||.|.+|+......  .. .-..|..  .|+|+.|+++|+++++-+.|..+++||+++.+ +
T Consensus       320 ~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp  399 (641)
T KOG0772|consen  320 VTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP  399 (641)
T ss_pred             ceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc
Confidence            46789999999999999999999999743321  11 2245665  89999999999999999999999999998865 3


Q ss_pred             eEEe-----cCCCeEEEEeeCCCEEEEEeC------CCcEEEEECcCC
Q 045566           75 VHTQ-----QLPDRCYALTVRYPLMVVGTA------DRNLVVFNLQNP  111 (112)
Q Consensus        75 ~~~~-----~~~~~~~~~~~~~~~~~~~~~------d~~v~~~d~~~~  111 (112)
                      +...     ..+.+..+|+|+.+++++|..      .+.+.+||..+.
T Consensus       400 L~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~  447 (641)
T KOG0772|consen  400 LNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL  447 (641)
T ss_pred             hhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce
Confidence            3322     234567899999999999855      467888887654

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=1.2e-17  Score=100.63  Aligned_cols=109  Identities=20%  Similarity=0.349  Sum_probs=96.3

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEee-ccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE--
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAM-HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT--   77 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~--   77 (112)
                      |+++.|+++|.+|++|..+|.|.+||..+.+.+..+.. |...|-+++|.  +..+.+|+.++.|..+|++..+....  
T Consensus       220 vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~  297 (484)
T KOG0305|consen  220 VTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTL  297 (484)
T ss_pred             eEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhh
Confidence            57899999999999999999999999999998888887 99999999997  67888999999999999998765433  


Q ss_pred             --ecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           78 --QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        78 --~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                        +...+-.+.|++++.++++|+.|+.+.|||....
T Consensus       298 ~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~  333 (484)
T KOG0305|consen  298 QGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP  333 (484)
T ss_pred             hcccceeeeeEECCCCCeeccCCCccceEeccCCCc
Confidence              4455678899999999999999999999998543

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.76  E-value=8.4e-18  Score=97.27  Aligned_cols=111  Identities=23%  Similarity=0.484  Sum_probs=88.6

Q ss_pred             eeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCc---EEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCC---
Q 045566            2 LCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQP---VTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPN---   73 (112)
Q Consensus         2 ~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~---   73 (112)
                      ..++||| ....+++|..-+.+++|...++.-.   ..+.+|...|..++|+| ....|++|+-|+.|++||.|.++   
T Consensus       215 y~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~  294 (440)
T KOG0302|consen  215 YGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA  294 (440)
T ss_pred             eeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccc
Confidence            3688999 3345778888889999998775422   24567999999999999 56688999999999999999873   


Q ss_pred             ce--EEecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           74 PV--HTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        74 ~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      ++  ..+...++.+.|+....+|++|+.||.++|||+|+.+
T Consensus       295 ~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~  335 (440)
T KOG0302|consen  295 AVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFK  335 (440)
T ss_pred             eeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhcc
Confidence            22  3345567888888888899999999999999999753

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.76  E-value=2.5e-18  Score=102.87  Aligned_cols=109  Identities=18%  Similarity=0.267  Sum_probs=97.6

Q ss_pred             eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCC-
Q 045566            3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP-   81 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~-   81 (112)
                      +++.+||.+..++|+.||.|.|||+.+...++.+++|...+.||..+++|..+.+|+-|.+++.||+++.+.+..+.+. 
T Consensus       514 ALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~S  593 (705)
T KOG0639|consen  514 ALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSS  593 (705)
T ss_pred             hhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhh
Confidence            5788999999999999999999999999999999999999999999999999999999999999999999887766654 


Q ss_pred             -CeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           82 -DRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        82 -~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                       +-++...|++.++++|..++.+.+.....+
T Consensus       594 QIfSLg~cP~~dWlavGMens~vevlh~skp  624 (705)
T KOG0639|consen  594 QIFSLGYCPTGDWLAVGMENSNVEVLHTSKP  624 (705)
T ss_pred             hheecccCCCccceeeecccCcEEEEecCCc
Confidence             445667889999999999999988766544

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.76  E-value=3.4e-18  Score=104.87  Aligned_cols=112  Identities=20%  Similarity=0.309  Sum_probs=95.2

Q ss_pred             CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCCC-------CcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCC
Q 045566            1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGG-------QPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQ   71 (112)
Q Consensus         1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~-------~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~   71 (112)
                      |..+.|+| |...|+++++||.|++|.+..+.       +...+..|...|+++.|+| -...+++++.|-+|++||+++
T Consensus       630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~  709 (1012)
T KOG1445|consen  630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN  709 (1012)
T ss_pred             eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence            56789999 88999999999999999986543       3446778999999999999 667889999999999999998


Q ss_pred             CCceEEec---CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           72 PNPVHTQQ---LPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        72 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      .+....+.   ..+-.++|+|+|+.+++.+.||++++|+.+..+
T Consensus       710 ~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e  753 (1012)
T KOG1445|consen  710 AKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE  753 (1012)
T ss_pred             hhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC
Confidence            87655443   345688999999999999999999999987653

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.76  E-value=5.6e-18  Score=101.38  Aligned_cols=112  Identities=16%  Similarity=0.289  Sum_probs=94.1

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcE--EEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV--TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ   78 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~   78 (112)
                      |.++...|+|+.|++|++-.++.|||+....+-.  ++.........++.+||.+..++++.||.|.+||+++...++.+
T Consensus       468 iRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqf  547 (705)
T KOG0639|consen  468 IRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQF  547 (705)
T ss_pred             eeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecc
Confidence            4567789999999999999999999997665432  33333345677889999999999999999999999998888777


Q ss_pred             cCC---CeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           79 QLP---DRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        79 ~~~---~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      ..+   ..++.++++|..|.+|+.|..|+-||+|+++
T Consensus       548 qGhtDGascIdis~dGtklWTGGlDntvRcWDlregr  584 (705)
T KOG0639|consen  548 QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGR  584 (705)
T ss_pred             cCCCCCceeEEecCCCceeecCCCccceeehhhhhhh
Confidence            653   4788889999999999999999999999863

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.75  E-value=1.7e-17  Score=102.12  Aligned_cols=109  Identities=27%  Similarity=0.399  Sum_probs=94.0

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCC-CceEEec
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP-NPVHTQQ   79 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~-~~~~~~~   79 (112)
                      |.++..+  +..+++|+.|+.|++|+..+.+.+..+.+|...|.++.+.+. ..+++|+.|+.|++||+++. +++..+.
T Consensus       334 V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~  410 (537)
T KOG0274|consen  334 VNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQ  410 (537)
T ss_pred             EEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhc
Confidence            4566665  889999999999999999999999999999999999988765 88999999999999999999 8887776


Q ss_pred             CCCe-EEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           80 LPDR-CYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        80 ~~~~-~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      .+.. ...+...++++++++.|+.|++||..+++
T Consensus       411 ~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~  444 (537)
T KOG0274|consen  411 GHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGE  444 (537)
T ss_pred             CCcccccccccccceeEeccccccEEEeecccCc
Confidence            6542 34556678899999999999999988764

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.75  E-value=2.1e-16  Score=97.37  Aligned_cols=110  Identities=22%  Similarity=0.360  Sum_probs=92.6

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |.++++...+.++++|+.|.++++||..++++...+.+|.+.+.++...  ...+++|+.|.+|++|++.+++.+..+.+
T Consensus       252 V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~  329 (537)
T KOG0274|consen  252 VWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRG  329 (537)
T ss_pred             ceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEecc
Confidence            4567777778899999999999999999999999999999999998774  45677889999999999999998887774


Q ss_pred             C-CeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           81 P-DRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        81 ~-~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      + ....+...++..+++|+.|+.|.+||.++++
T Consensus       330 h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~  362 (537)
T KOG0274|consen  330 HTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGK  362 (537)
T ss_pred             ccccEEEEEecCCEEEEEecCceEEEEEhhhce
Confidence            2 2334444568999999999999999998764

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.74  E-value=5.7e-17  Score=100.56  Aligned_cols=110  Identities=20%  Similarity=0.228  Sum_probs=98.8

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |.|+++|||+++|+++--|.+|++|-+.+-+.-..+.+|.-+|.|+..+|+++.++||+.|+.|++|-+.-+.+-..+.+
T Consensus       511 vL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fA  590 (888)
T KOG0306|consen  511 VLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFA  590 (888)
T ss_pred             EEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhc
Confidence            57999999999999999999999999999888889999999999999999999999999999999998877766555544


Q ss_pred             ---CCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           81 ---PDRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        81 ---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                         .+..+.|.|....+++++.|+.++-||-.+
T Consensus       591 HdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k  623 (888)
T KOG0306|consen  591 HDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK  623 (888)
T ss_pred             ccCceeEEEEcccceeEEEecCcceEEeechhh
Confidence               446788999999999999999999998654

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.74  E-value=1.9e-17  Score=99.45  Aligned_cols=77  Identities=14%  Similarity=0.199  Sum_probs=68.8

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT   77 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~   77 (112)
                      |+.++|+|||++||+.++||.++|+|..+.+.+...+..-+...|++|+|||+++++|++|-.|.+|.+...+.+..
T Consensus       293 in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR  369 (636)
T KOG2394|consen  293 INEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR  369 (636)
T ss_pred             ccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe
Confidence            56789999999999999999999999988777666666678899999999999999999999999999988776644

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.74  E-value=1.2e-16  Score=97.78  Aligned_cols=111  Identities=20%  Similarity=0.322  Sum_probs=98.8

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |.+++.++.|..++.|+..+.+++||.++.+.+-.+.+|...|..+..+++|..+++++.|++|++||+...+++.++..
T Consensus       174 iYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~v  253 (735)
T KOG0308|consen  174 IYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIV  253 (735)
T ss_pred             eeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEe
Confidence            46888999999999999999999999999999999999999999999999999999999999999999999998877655


Q ss_pred             C---CeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           81 P---DRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        81 ~---~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      +   +.++..+++-..+++|+.|+.|..=|++++
T Consensus       254 H~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  254 HKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             ccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence            4   345555667779999999999999888874

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=1.8e-16  Score=99.76  Aligned_cols=110  Identities=20%  Similarity=0.279  Sum_probs=91.3

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEee--------ccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAM--------HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP   72 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~   72 (112)
                      |.++.|+|++++||+.+.||.|++|++.++....++.+        ....+..++|+|++..++..+.|+.|.+|+..+.
T Consensus       141 Vl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w  220 (933)
T KOG1274|consen  141 VLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW  220 (933)
T ss_pred             eeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCc
Confidence            57899999999999999999999999987766544321        1345678999999888889999999999998877


Q ss_pred             CceEEecC-----CCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           73 NPVHTQQL-----PDRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        73 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      .....+..     ....+.|+|+|.+|++++.||.|.+||+.+
T Consensus       221 e~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  221 ELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             eeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            65554433     246789999999999999999999999874

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.73  E-value=5.6e-17  Score=103.05  Aligned_cols=111  Identities=20%  Similarity=0.319  Sum_probs=91.2

Q ss_pred             CeeEEEcCCCCEEEEEc--CCCcEEEEEcCC------------CCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEE
Q 045566            1 VLCSTWKDDGTTVFSGG--CDKQVKMWPLLS------------GGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKY   66 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~--~~~~v~~~~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~   66 (112)
                      |.+++.+|++..+++|+  .|+.+.+|+...            .+++.+...|.+.|+|+.|+|+|+++++|++|+.|.+
T Consensus        16 IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~i   95 (942)
T KOG0973|consen   16 IFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMI   95 (942)
T ss_pred             EEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEE
Confidence            46889999999999999  888888998642            2334566789999999999999999999999999999


Q ss_pred             eeCCCC------------------Cce---EEecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           67 WDTRQP------------------NPV---HTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        67 w~~~~~------------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      |+....                  +.+   ..+...+..++|+|++.++++++.|++|.+||.+++
T Consensus        96 W~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF  161 (942)
T KOG0973|consen   96 WERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF  161 (942)
T ss_pred             eeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc
Confidence            987630                  011   223345678899999999999999999999998875

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=1.6e-15  Score=85.92  Aligned_cols=73  Identities=14%  Similarity=0.145  Sum_probs=62.1

Q ss_pred             cCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCC------eEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           40 DAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD------RCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        40 ~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      ....+.+.|+|+|+.++.+...+.+++.|--.+..+..+....      ...+|.|+++++++|+.||+|.+|++++++
T Consensus       187 ~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~  265 (311)
T KOG1446|consen  187 EAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGK  265 (311)
T ss_pred             ccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCc
Confidence            4567899999999999999999999999988887666654321      356889999999999999999999998874

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.73  E-value=9e-18  Score=97.95  Aligned_cols=111  Identities=17%  Similarity=0.342  Sum_probs=96.2

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |+.+.|.++++.++.++.|+.+++|++...+...++.+|.+.|+++.|......+++|+.|++++.||+....+......
T Consensus       222 it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~  301 (459)
T KOG0288|consen  222 ITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP  301 (459)
T ss_pred             cceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc
Confidence            56889999999999999999999999999999999999999999999988666699999999999999998877776655


Q ss_pred             CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           81 PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      ...+..+......+++|..|++|++||.+.+
T Consensus       302 ~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~  332 (459)
T KOG0288|consen  302 GSQCNDIVCSISDVISGHFDKKVRFWDIRSA  332 (459)
T ss_pred             cccccceEecceeeeecccccceEEEeccCC
Confidence            5555444445777899999999999998875

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=1.6e-16  Score=87.74  Aligned_cols=104  Identities=19%  Similarity=0.314  Sum_probs=85.7

Q ss_pred             cCCCCEEEEEcCCCcEEEEEcCCCC---CcEEEeeccCCeeEEEEc-c-CCCEEEEeeCCCcEEEeeCCCCCceE-----
Q 045566            7 KDDGTTVFSGGCDKQVKMWPLLSGG---QPVTVAMHDAPIKEVAWI-P-EMNLLATGSWDKTLKYWDTRQPNPVH-----   76 (112)
Q Consensus         7 ~~~~~~l~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~v~~~~~~-~-~~~~~~~~~~~~~i~~w~~~~~~~~~-----   76 (112)
                      +--|++|++|+.|+.|+|+..+.+.   .+.++.+|.++|..++|. | .|..+++++.||.|.+|.-.+++-.+     
T Consensus        20 DyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~   99 (299)
T KOG1332|consen   20 DYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHA   99 (299)
T ss_pred             hhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhh
Confidence            3357899999999999999988665   456889999999999995 4 79999999999999999987775322     


Q ss_pred             EecCCCeEEEEeeC--CCEEEEEeCCCcEEEEECcC
Q 045566           77 TQQLPDRCYALTVR--YPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        77 ~~~~~~~~~~~~~~--~~~~~~~~~d~~v~~~d~~~  110 (112)
                      .+...+++++|.|.  |-.|++++.||.|.+.+.++
T Consensus       100 ~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~  135 (299)
T KOG1332|consen  100 AHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDS  135 (299)
T ss_pred             hhcccceeecccccccceEEEEeeCCCcEEEEEEcC
Confidence            23446678888886  45889999999999988764

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.73  E-value=1.3e-15  Score=88.05  Aligned_cols=107  Identities=14%  Similarity=0.213  Sum_probs=91.8

Q ss_pred             EEEcCCCCEEEEEc--CCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCc-EEEeeCCCCCceEEecC
Q 045566            4 STWKDDGTTVFSGG--CDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKT-LKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         4 ~~~~~~~~~l~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-i~~w~~~~~~~~~~~~~   80 (112)
                      +++++.+.+++.-+  ..|.|.+||..+-++...+..|++.+-+++|+++|.++++++..|+ |+++.+.+++.+..+..
T Consensus       135 lS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR  214 (391)
T KOG2110|consen  135 LSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR  214 (391)
T ss_pred             eccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC
Confidence            33444556776642  4689999999999999999999999999999999999999999988 89999999998888765


Q ss_pred             C-----CeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           81 P-----DRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        81 ~-----~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      .     +.+++|++++++|.+.+..++|++|.+..
T Consensus       215 G~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  215 GTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             CceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence            4     35789999999999999999999998764

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.73  E-value=3.6e-17  Score=90.67  Aligned_cols=110  Identities=18%  Similarity=0.382  Sum_probs=94.3

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCC-CcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG-QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      |.+++|+.|.+.|++|+.+..+++||++..+ ++.++.+|.+.|..+.|....+.+++...|+.|++||.+++..++.+.
T Consensus       103 vk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~  182 (334)
T KOG0278|consen  103 VKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE  182 (334)
T ss_pred             eeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe
Confidence            4688999999999999999999999998765 556788999999999999988888998999999999999999888775


Q ss_pred             C--CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           80 L--PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        80 ~--~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      .  ++.++-++++|+++.+ ...+.|.+||..+.
T Consensus       183 ~~s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf  215 (334)
T KOG0278|consen  183 FNSPVTSLEVSQDGRILTI-AYGSSVKFWDAKSF  215 (334)
T ss_pred             cCCCCcceeeccCCCEEEE-ecCceeEEeccccc
Confidence            4  6678888999886554 45678999998764

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=7.3e-16  Score=84.75  Aligned_cols=109  Identities=20%  Similarity=0.236  Sum_probs=94.5

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC----c--
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN----P--   74 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~----~--   74 (112)
                      |.+++..|.|++|++|..|....+||++.+..++.+..|...|.|+.|+|...++++++.|..|++-|++..-    +  
T Consensus       234 vaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~  313 (350)
T KOG0641|consen  234 VAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIM  313 (350)
T ss_pred             eEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceE
Confidence            4678999999999999999999999999999999999999999999999999999999999999999986432    1  


Q ss_pred             -eEEecCCCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           75 -VHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        75 -~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                       +..++.......|+|+.-.+++.+.|.++.+|-+.
T Consensus       314 vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  314 VVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             EEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence             22334445567889998899999999999999764

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.72  E-value=9.9e-17  Score=91.57  Aligned_cols=102  Identities=16%  Similarity=0.218  Sum_probs=90.7

Q ss_pred             CCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCceEEecC------CC
Q 045566           10 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNPVHTQQL------PD   82 (112)
Q Consensus        10 ~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~------~~   82 (112)
                      ..+++.++.-|.|++.|+.+++....+.+|...|+.+.++| +.+++++++.|..|++|++++..++..+.+      .+
T Consensus       105 ~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeV  184 (385)
T KOG1034|consen  105 NPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEV  184 (385)
T ss_pred             CeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcE
Confidence            45788889999999999999999889999999999999999 667889999999999999999998876633      45


Q ss_pred             eEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           83 RCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        83 ~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      -++.|+.++.++++++.|..+.+|++..+
T Consensus       185 LSvD~~~~gd~i~ScGmDhslk~W~l~~~  213 (385)
T KOG1034|consen  185 LSVDFSLDGDRIASCGMDHSLKLWRLNVK  213 (385)
T ss_pred             EEEEEcCCCCeeeccCCcceEEEEecChh
Confidence            67888999999999999999999999854

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.72  E-value=7.3e-16  Score=85.59  Aligned_cols=111  Identities=14%  Similarity=0.300  Sum_probs=81.2

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEee---------------------------------------ccC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAM---------------------------------------HDA   41 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~---------------------------------------~~~   41 (112)
                      |..+-|....+.+++.+.|+.|++||.+++.....+.-                                       -..
T Consensus       146 Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~  225 (334)
T KOG0278|consen  146 IRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPC  225 (334)
T ss_pred             ceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCcc
Confidence            34566777777888889999999999887765544321                                       012


Q ss_pred             CeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe----cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           42 PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ----QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        42 ~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      .|.+...+|+...+++|+.|..++.||..++..+..+    ..++.++.|+|+|...++|+.||+|++|.+..+
T Consensus       226 nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~  299 (334)
T KOG0278|consen  226 NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG  299 (334)
T ss_pred             ccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence            3445556666667777777777888887777665443    346788999999999999999999999987654

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.72  E-value=6.7e-16  Score=90.32  Aligned_cols=102  Identities=21%  Similarity=0.248  Sum_probs=89.6

Q ss_pred             CCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCC-------C
Q 045566           10 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP-------D   82 (112)
Q Consensus        10 ~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~-------~   82 (112)
                      ...+++|..|+.|++||.+........+.+. .|+++..++++..+.+++.|..+.+.|+++....+.+...       .
T Consensus       312 ~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDw  390 (459)
T KOG0288|consen  312 ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDW  390 (459)
T ss_pred             ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccccccc
Confidence            4567788899999999999888888777554 9999999999999999999999999999999887776543       3


Q ss_pred             eEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           83 RCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        83 ~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      +...|+|++.++++|+.||.|+||++.+++
T Consensus       391 trvvfSpd~~YvaAGS~dgsv~iW~v~tgK  420 (459)
T KOG0288|consen  391 TRVVFSPDGSYVAAGSADGSVYIWSVFTGK  420 (459)
T ss_pred             ceeEECCCCceeeeccCCCcEEEEEccCce
Confidence            678999999999999999999999998874

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.71  E-value=5.9e-17  Score=92.67  Aligned_cols=110  Identities=23%  Similarity=0.414  Sum_probs=92.1

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC-ceEEecC
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN-PVHTQQL   80 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~-~~~~~~~   80 (112)
                      .+..|-..|.++++++.|.+-.+||+++++.+..+.+|....+.+.-+|..+++++.+.|.+.++||++..- .+..+..
T Consensus       276 ~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQG  355 (481)
T KOG0300|consen  276 SACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQG  355 (481)
T ss_pred             EehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecc
Confidence            456677789999999999999999999999999999999999999999999999999999999999998542 2233333


Q ss_pred             ---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           81 ---PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        81 ---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                         .+++..|..+ ..+++|+.|.+|++||++++.
T Consensus       356 HtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMR  389 (481)
T KOG0300|consen  356 HTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMR  389 (481)
T ss_pred             cccceeEEEEecC-CceeecCCCceEEEeeecccc
Confidence               3456666655 468999999999999999863

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.71  E-value=6.3e-16  Score=86.36  Aligned_cols=111  Identities=17%  Similarity=0.342  Sum_probs=89.1

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcE----------------------------------------------
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV----------------------------------------------   34 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~----------------------------------------------   34 (112)
                      |.|+..+-+.+.+++|+.|.++++||.++++.+.                                              
T Consensus        55 vW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~  134 (327)
T KOG0643|consen   55 VWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDI  134 (327)
T ss_pred             EEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhh
Confidence            4567777788888899999999999887664322                                              


Q ss_pred             -------EEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceE----EecCCCeEEEEeeCCCEEEEEeCCCcE
Q 045566           35 -------TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVH----TQQLPDRCYALTVRYPLMVVGTADRNL  103 (112)
Q Consensus        35 -------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~~v  103 (112)
                             .++.+.+.++...|.|.+..+++|..+|.|..||.++++.+.    .+...++.++++++..++++++.|.+-
T Consensus       135 ~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dtta  214 (327)
T KOG0643|consen  135 DSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTA  214 (327)
T ss_pred             cccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccc
Confidence                   222344567888899999999999999999999999875442    334467889999999999999999999


Q ss_pred             EEEECcCC
Q 045566          104 VVFNLQNP  111 (112)
Q Consensus       104 ~~~d~~~~  111 (112)
                      ++||+++.
T Consensus       215 kl~D~~tl  222 (327)
T KOG0643|consen  215 KLVDVRTL  222 (327)
T ss_pred             eeeeccce
Confidence            99998875

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.71  E-value=3.3e-17  Score=94.52  Aligned_cols=108  Identities=12%  Similarity=0.250  Sum_probs=91.5

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCC-cEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe--
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ-PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ--   78 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~--   78 (112)
                      +.++|+|++--+.++++|..+..||++.... +....+|.+.|.+++|+|.|+-|++|+.|.+|++|..+.+...-.+  
T Consensus       233 N~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht  312 (433)
T KOG0268|consen  233 NTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT  312 (433)
T ss_pred             cceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH
Confidence            4689999888889999999999999987654 4456789999999999999999999999999999998776543322  


Q ss_pred             --cCCCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           79 --QLPDRCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        79 --~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                        ..++-++.|+.+..++++|+.|+.|++|.-+
T Consensus       313 kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~  345 (433)
T KOG0268|consen  313 KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK  345 (433)
T ss_pred             hhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence              1245678899999999999999999999754

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.70  E-value=2.1e-16  Score=89.44  Aligned_cols=111  Identities=23%  Similarity=0.321  Sum_probs=90.1

Q ss_pred             eeEEEcCC---CCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCC-EEEEeeCCCcEEEeeCCCC-CceE
Q 045566            2 LCSTWKDD---GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDTRQP-NPVH   76 (112)
Q Consensus         2 ~~~~~~~~---~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~i~~w~~~~~-~~~~   76 (112)
                      .+-+++|-   -.++|+|..+-+|++.|+..+....++.+|.+.|.++.|+|... .+++|+.|+.+++||++.. .+..
T Consensus       147 YshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~  226 (397)
T KOG4283|consen  147 YSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFR  226 (397)
T ss_pred             ehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeE
Confidence            34456772   34788899999999999999999999999999999999999655 5688999999999999754 2221


Q ss_pred             E-----------------ecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           77 T-----------------QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        77 ~-----------------~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      .                 +...+..++|..++.++++++.|.++++|+..+|+
T Consensus       227 ~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  227 VLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             EeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence            1                 12234578899999999999999999999988764

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.70  E-value=1.5e-16  Score=93.89  Aligned_cols=72  Identities=22%  Similarity=0.370  Sum_probs=67.3

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP   72 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~   72 (112)
                      +.+++.++||++|++|+.|..+.||+..+.+++..+.+|.+.|.+++|......+++++.|+.+++|++...
T Consensus       205 il~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~  276 (479)
T KOG0299|consen  205 ILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL  276 (479)
T ss_pred             eEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh
Confidence            468999999999999999999999999999999999999999999999998889999999999999998643

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.70  E-value=2.9e-16  Score=92.12  Aligned_cols=110  Identities=20%  Similarity=0.309  Sum_probs=91.5

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe-eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe-
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA-MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ-   78 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~-   78 (112)
                      |..+.|+||.+++++|+.+..+.+||..++.....++ ++...+.+.+|.|||..+++|+.|+.+..||+.....-.-- 
T Consensus       272 V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~g  351 (519)
T KOG0293|consen  272 VSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEG  351 (519)
T ss_pred             eEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccc
Confidence            4678999999999999999999999999998877664 34678899999999999999999999999998754321111 


Q ss_pred             --cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           79 --QLPDRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        79 --~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                        ...+..+++.++|.++++.+.|..+++++..+
T Consensus       352 vr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~  385 (519)
T KOG0293|consen  352 VRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREA  385 (519)
T ss_pred             cccceeEEEEEcCCCcEEEEEecccceeeechhh
Confidence              12356788899999999999999999998764

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.70  E-value=1.8e-16  Score=99.17  Aligned_cols=106  Identities=11%  Similarity=0.158  Sum_probs=93.7

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec--
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ--   79 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~--   79 (112)
                      .++..+.....++.+..|-.|+++|..+.+..+.+.+|.+.++.+.|+|+|+++++++.|++|++||+.++..+-.+.  
T Consensus       538 ~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd  617 (910)
T KOG1539|consen  538 TGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD  617 (910)
T ss_pred             ceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC
Confidence            345556666778889999999999999999999999999999999999999999999999999999999999886654  


Q ss_pred             CCCeEEEEeeCCCEEEEEeCC-CcEEEEE
Q 045566           80 LPDRCYALTVRYPLMVVGTAD-RNLVVFN  107 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~d-~~v~~~d  107 (112)
                      .+...+.|+|+|.+|++...| ..|++|-
T Consensus       618 ~~~~sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  618 SPCTSLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             CcceeeEECCCCCEEEEEEecCceEEEEE
Confidence            456789999999999999998 5799994

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=6.2e-16  Score=90.25  Aligned_cols=108  Identities=18%  Similarity=0.354  Sum_probs=90.7

Q ss_pred             eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe----
Q 045566            3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ----   78 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~----   78 (112)
                      +++|+.+|..+++++.||.+|+|+.+....+.....|...|.++.|+||++.+++-+.+ ..++|+.+++..+...    
T Consensus       149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~  227 (398)
T KOG0771|consen  149 VVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFS  227 (398)
T ss_pred             EEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcc
Confidence            68999999999999999999999988777777778899999999999999999999999 9999998766211000    


Q ss_pred             -----------------------------------------------------cCCCeEEEEeeCCCEEEEEeCCCcEEE
Q 045566           79 -----------------------------------------------------QLPDRCYALTVRYPLMVVGTADRNLVV  105 (112)
Q Consensus        79 -----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~d~~v~~  105 (112)
                                                                           ...+.+++.+.+|++++.|+.||.|.+
T Consensus       228 k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai  307 (398)
T KOG0771|consen  228 KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAI  307 (398)
T ss_pred             cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEE
Confidence                                                                 002356788889999999999999999


Q ss_pred             EECcCC
Q 045566          106 FNLQNP  111 (112)
Q Consensus       106 ~d~~~~  111 (112)
                      ++..+.
T Consensus       308 ~~~~~l  313 (398)
T KOG0771|consen  308 YDAKSL  313 (398)
T ss_pred             EEecee
Confidence            987664

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.69  E-value=5.6e-16  Score=95.40  Aligned_cols=111  Identities=13%  Similarity=0.173  Sum_probs=90.7

Q ss_pred             CeeEEEcCCCCEEEEEcCC-----CcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCc-
Q 045566            1 VLCSTWKDDGTTVFSGGCD-----KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP-   74 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~-   74 (112)
                      |.+++.+|+++++|+++..     ..|++|+..+......+..|.-.|+.++|+|+++++++.+.|+++.+|....... 
T Consensus       528 v~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~  607 (764)
T KOG1063|consen  528 VYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKD  607 (764)
T ss_pred             EEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccch
Confidence            5789999999999999753     4589999988888888999999999999999999999999999999998743321 


Q ss_pred             ------eEEecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           75 ------VHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        75 ------~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                            ...+..-+-...|+|++.++++++.|.+|.+|.....
T Consensus       608 e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  608 EFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             hhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence                  1111122235567889999999999999999987653

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=5.3e-16  Score=93.96  Aligned_cols=111  Identities=20%  Similarity=0.349  Sum_probs=90.5

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEE-eeccCCeeEEEEcc--CCCEEEEeeCCCcEEEeeCCCCCc---
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTV-AMHDAPIKEVAWIP--EMNLLATGSWDKTLKYWDTRQPNP---   74 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~~~~~~~~~~i~~w~~~~~~~---   74 (112)
                      |+|+.|+.+|.+|++|+.|-.+.|||....+++..+ .+|...|.++.|-|  +...+++|..|..|+++|+...+.   
T Consensus        53 VN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~  132 (758)
T KOG1310|consen   53 VNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGM  132 (758)
T ss_pred             ecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccccccccc
Confidence            689999999999999999999999999877776655 58999999999999  566889999999999999974321   


Q ss_pred             -------eEE---ecCCCeEEEEeeCC-CEEEEEeCCCcEEEEECcCC
Q 045566           75 -------VHT---QQLPDRCYALTVRY-PLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        75 -------~~~---~~~~~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~  111 (112)
                             ...   +...+..++..|++ ..+.+++.||.++.+|+|.+
T Consensus       133 d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREp  180 (758)
T KOG1310|consen  133 DHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREP  180 (758)
T ss_pred             ccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence                   111   11234566777776 67899999999999999985

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=2.8e-15  Score=83.07  Aligned_cols=111  Identities=18%  Similarity=0.202  Sum_probs=89.9

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |+++-..|+.+.++.++.|+.++-||+++++...++++|.+.++++.-......+++|+.||++++||.++.+.+..+..
T Consensus       117 INam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~  196 (325)
T KOG0649|consen  117 INAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEP  196 (325)
T ss_pred             cceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEecc
Confidence            56788888777777777899999999999999999999999999999877667889999999999999999988766543


Q ss_pred             C-----------CeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           81 P-----------DRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        81 ~-----------~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      -           ....++.-+..++++|+ ...+.+|.++..+
T Consensus       197 yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~lslwhLrsse  238 (325)
T KOG0649|consen  197 YKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLSLWHLRSSE  238 (325)
T ss_pred             ccChhhcCcccCceeEEEeccCceEEecC-CCceeEEeccCCC
Confidence            1           12356666777777664 4578999998753

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.68  E-value=2.9e-15  Score=93.91  Aligned_cols=112  Identities=15%  Similarity=0.173  Sum_probs=94.6

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEE---eeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTV---AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT   77 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~   77 (112)
                      +++++.++.|++.+.|...|.|-+|++..+-....+   +.|..+|+.++...-++.+++++.+|.+.+||+.+...+..
T Consensus       451 ~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~  530 (910)
T KOG1539|consen  451 ATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKS  530 (910)
T ss_pred             eEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeee
Confidence            468899999999999999999999999988776666   57999999999998889999999999999999876541111


Q ss_pred             e--------------------------------------------cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           78 Q--------------------------------------------QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        78 ~--------------------------------------------~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      .                                            ...++.++|+|+|+++++++.|++|++||+.++.
T Consensus       531 l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~  609 (910)
T KOG1539|consen  531 LRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGT  609 (910)
T ss_pred             eccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcc
Confidence            0                                            1123689999999999999999999999998763

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.68  E-value=6.5e-16  Score=94.44  Aligned_cols=111  Identities=17%  Similarity=0.305  Sum_probs=86.0

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEE--EeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCC----
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVT--VAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPN----   73 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~----   73 (112)
                      |..+.|.|....|++++.|.++++||+++.+....  +.+|...|.+++|.| +...|++|+.|+.+.+||++...    
T Consensus       103 ifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~  182 (720)
T KOG0321|consen  103 IFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDAL  182 (720)
T ss_pred             eEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhH
Confidence            35678999677899999999999999998887665  789999999999999 67789999999999999987432    


Q ss_pred             ----------------ceE-------EecCC---Ce---EEEEeeCCCEEEEEeC-CCcEEEEECcCC
Q 045566           74 ----------------PVH-------TQQLP---DR---CYALTVRYPLMVVGTA-DRNLVVFNLQNP  111 (112)
Q Consensus        74 ----------------~~~-------~~~~~---~~---~~~~~~~~~~~~~~~~-d~~v~~~d~~~~  111 (112)
                                      +..       ...++   +.   ...+..|...|++++. |+.|++||+|+.
T Consensus       183 e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~  250 (720)
T KOG0321|consen  183 EEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKN  250 (720)
T ss_pred             HHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccc
Confidence                            000       00000   01   1334457778888887 999999999975

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.67  E-value=2.5e-15  Score=85.24  Aligned_cols=109  Identities=17%  Similarity=0.266  Sum_probs=88.3

Q ss_pred             CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEcc---CCCEEEEeeCCCcEEEeeCCCCCceE
Q 045566            1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP---EMNLLATGSWDKTLKYWDTRQPNPVH   76 (112)
Q Consensus         1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~i~~w~~~~~~~~~   76 (112)
                      |..+.|-| |...+.+++.|..+++||.++.+....+. -++.|.+-+++|   ...++++|..+-.|++.|+..+..-+
T Consensus       104 iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH  182 (397)
T KOG4283|consen  104 ISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH  182 (397)
T ss_pred             eeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCccee
Confidence            46778889 66788889999999999999888777665 456788888888   35578888889999999999988776


Q ss_pred             EecC---CCeEEEEeeCCC-EEEEEeCCCcEEEEECcC
Q 045566           77 TQQL---PDRCYALTVRYP-LMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        77 ~~~~---~~~~~~~~~~~~-~~~~~~~d~~v~~~d~~~  110 (112)
                      .+..   .+-++.|+|..+ .|++|+.||.|++||+|.
T Consensus       183 ~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRr  220 (397)
T KOG4283|consen  183 TLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRR  220 (397)
T ss_pred             eeccccCceEEEEeccCceeEEEecCCCceEEEEEeec
Confidence            6654   445677777665 568899999999999985

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.67  E-value=9.7e-16  Score=92.38  Aligned_cols=110  Identities=14%  Similarity=0.219  Sum_probs=89.0

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCC--------CCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLS--------GGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP   72 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~   72 (112)
                      |..++|+|....|++++.|+.+.+|++..        -+++.++.+|.++|.|+++.+++.+..+|+.||.|+.|++...
T Consensus       297 ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n  376 (577)
T KOG0642|consen  297 IRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPN  376 (577)
T ss_pred             hhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCC
Confidence            34677888889999999999999999832        2356688999999999999999999999999999999966422


Q ss_pred             C-------------ceEEecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           73 N-------------PVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        73 ~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      .             ++..+...+..+.++.....|++++.||+++.|+...
T Consensus       377 ~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~  427 (577)
T KOG0642|consen  377 QDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTE  427 (577)
T ss_pred             CCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCC
Confidence            1             2222333445788888888999999999999998654

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.67  E-value=1.3e-15  Score=87.17  Aligned_cols=110  Identities=19%  Similarity=0.388  Sum_probs=90.4

Q ss_pred             CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeC-CCcEEEeeCCCCC-ceEE
Q 045566            1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW-DKTLKYWDTRQPN-PVHT   77 (112)
Q Consensus         1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~i~~w~~~~~~-~~~~   77 (112)
                      |.|++|+| +...++.++....+-||.-....++..+-+|.+.|+.+.|.++|+.+++|.. +-.|..||++..+ ++..
T Consensus       210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~  289 (406)
T KOG2919|consen  210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYA  289 (406)
T ss_pred             eeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhh
Confidence            57899999 5568999999889999987788888888899999999999999999988875 6779999998754 3333


Q ss_pred             ecCC----CeE--EEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           78 QQLP----DRC--YALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        78 ~~~~----~~~--~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      +..+    ...  +.+.|++++|++|+.||.|++||++.
T Consensus       290 L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  290 LERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD  328 (406)
T ss_pred             hhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence            3322    223  44568899999999999999999987

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=9.2e-15  Score=86.57  Aligned_cols=109  Identities=24%  Similarity=0.306  Sum_probs=93.3

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcC---------CCCCcEEEeeccCCeeEEEEccC--CCEEEEeeCCCcEEEeeC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLL---------SGGQPVTVAMHDAPIKEVAWIPE--MNLLATGSWDKTLKYWDT   69 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~i~~w~~   69 (112)
                      |+|+.|+.|+..|++|+.||.|.+|.+.         +.++...+..|.-+|+.+...+.  ...+++.+.|+++++||+
T Consensus       126 ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdl  205 (476)
T KOG0646|consen  126 ITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDL  205 (476)
T ss_pred             eeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEe
Confidence            6899999999999999999999999863         23456677889999999998874  357899999999999999


Q ss_pred             CCCCceEEecC--CCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           70 RQPNPVHTQQL--PDRCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        70 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                      ..+..+.....  ...+++++|.+..+++|+.+|.|.+.++.
T Consensus       206 S~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~  247 (476)
T KOG0646|consen  206 SLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLF  247 (476)
T ss_pred             ccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehh
Confidence            99987776655  45788899999999999999999887754

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.67  E-value=5.3e-15  Score=84.22  Aligned_cols=73  Identities=15%  Similarity=0.263  Sum_probs=66.7

Q ss_pred             CeeEEEcCCCC--EEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC
Q 045566            1 VLCSTWKDDGT--TVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN   73 (112)
Q Consensus         1 v~~~~~~~~~~--~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~   73 (112)
                      |+++.|.+...  .|++|+.||.|.+|+....+.+..++.|...|+.++.+|.+++.++.+.|+.+++|++-.++
T Consensus        86 itaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr  160 (362)
T KOG0294|consen   86 ITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR  160 (362)
T ss_pred             eEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence            57888988654  89999999999999999998888999999999999999999999999999999999987665

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=1.6e-14  Score=82.15  Aligned_cols=111  Identities=20%  Similarity=0.299  Sum_probs=85.3

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCC----cEEEeeccCCeeEEEEcc--CCCEEEEeeCCCcEEEeeCCCC--
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ----PVTVAMHDAPIKEVAWIP--EMNLLATGSWDKTLKYWDTRQP--   72 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~i~~w~~~~~--   72 (112)
                      |+++.|++.|+.+++|+.|++++|||......    ....+.|.+.|..+.|.+  -|+.+++++.|+++.+|.-...  
T Consensus        16 ihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~   95 (361)
T KOG2445|consen   16 IHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSE   95 (361)
T ss_pred             eeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccc
Confidence            57899999999999999999999999754433    234568999999999965  6889999999999999965211  


Q ss_pred             C-----c--eEEe---cCCCeEEEEeeC--CCEEEEEeCCCcEEEEECcCC
Q 045566           73 N-----P--VHTQ---QLPDRCYALTVR--YPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        73 ~-----~--~~~~---~~~~~~~~~~~~--~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      +     -  ...+   ...+..+.|.|.  |-.+++++.||.++||+...+
T Consensus        96 ~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp  146 (361)
T KOG2445|consen   96 EAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDP  146 (361)
T ss_pred             ccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCc
Confidence            1     1  1111   234567788874  668899999999999986543

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=1.9e-14  Score=82.29  Aligned_cols=108  Identities=18%  Similarity=0.381  Sum_probs=85.8

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCe-------------------------------------
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPI-------------------------------------   43 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v-------------------------------------   43 (112)
                      |++++|+++|++|++++.|..+.+||+..+.++..+. ..++|                                     
T Consensus        68 i~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~  146 (405)
T KOG1273|consen   68 ITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPK  146 (405)
T ss_pred             eeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccC
Confidence            6799999999999999999999999998775543321 00111                                     


Q ss_pred             ----------eEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC----CCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           44 ----------KEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL----PDRCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        44 ----------~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                                .+..|.+.|+++++|...|.+.+++..+.+++..++.    .+..+-++..++.++.-+.|+.|+.|+++
T Consensus       147 d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  147 DDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS  226 (405)
T ss_pred             CCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence                      1223556689999999999999999999888877754    34677888899999999999999999876

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.65  E-value=4.4e-15  Score=87.82  Aligned_cols=110  Identities=23%  Similarity=0.316  Sum_probs=93.1

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcE-----------------EE-eeccCCeeEEEEccCCCEEEEeeCCC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV-----------------TV-AMHDAPIKEVAWIPEMNLLATGSWDK   62 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~-----------------~~-~~~~~~v~~~~~~~~~~~~~~~~~~~   62 (112)
                      +.+++++|++++.++++.+++|.-|++.+++...                 .- ..|...+.+++.++|++++++|+.|+
T Consensus       145 ~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~  224 (479)
T KOG0299|consen  145 VTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDR  224 (479)
T ss_pred             ceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCc
Confidence            5789999999999999999999999987665320                 01 25677899999999999999999999


Q ss_pred             cEEEeeCCCCCceEEecC---CCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           63 TLKYWDTRQPNPVHTQQL---PDRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        63 ~i~~w~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      .|.+|+.++.+.++.+..   .+..++|......+++++.|+.+++|++..
T Consensus       225 ~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~  275 (479)
T KOG0299|consen  225 HVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ  275 (479)
T ss_pred             eEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH
Confidence            999999999887776543   567888888888999999999999999864

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.65  E-value=2.7e-15  Score=87.60  Aligned_cols=112  Identities=16%  Similarity=0.314  Sum_probs=88.1

Q ss_pred             CeeEEEcCCCC-EEEEEcCCCcEEEEEcCCCCC---------cEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCC
Q 045566            1 VLCSTWKDDGT-TVFSGGCDKQVKMWPLLSGGQ---------PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR   70 (112)
Q Consensus         1 v~~~~~~~~~~-~l~~~~~~~~v~~~~~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~   70 (112)
                      |.++.|.++.. .+++|+.|..|++|-+.....         ...+..|...|+++.|+|+|..+++|+.+|.+.+|-..
T Consensus        16 v~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~   95 (434)
T KOG1009|consen   16 VYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQG   95 (434)
T ss_pred             eEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEec
Confidence            35677887555 999999999999998764332         12456799999999999999999999999999999765


Q ss_pred             CCC----------------ceEE---ecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           71 QPN----------------PVHT---QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        71 ~~~----------------~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      ..+                ....   +...+..++|.+++.++.+++.|..+++||++.++
T Consensus        96 ~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~  156 (434)
T KOG1009|consen   96 DVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ  156 (434)
T ss_pred             CcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce
Confidence            110                0111   12345678999999999999999999999999874

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.65  E-value=1.1e-14  Score=82.39  Aligned_cols=111  Identities=16%  Similarity=0.343  Sum_probs=86.2

Q ss_pred             CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCC---cEEEeeccCCeeEEEEccCC-CEEEEeeCCCcEEEeeCCCCC--
Q 045566            1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQ---PVTVAMHDAPIKEVAWIPEM-NLLATGSWDKTLKYWDTRQPN--   73 (112)
Q Consensus         1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~i~~w~~~~~~--   73 (112)
                      ++++.|+. +-+++.+++-|-+..+||+.++..   ...+..|..+|..++|...+ ..|++.+.||.++++|++...  
T Consensus       153 lTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS  232 (364)
T KOG0290|consen  153 LTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS  232 (364)
T ss_pred             ccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc
Confidence            35778887 678899999999999999998643   33567899999999999844 578899999999999997432  


Q ss_pred             -----------ce--------------------------------------EEecCCCeEEEEeeC-CCEEEEEeCCCcE
Q 045566           74 -----------PV--------------------------------------HTQQLPDRCYALTVR-YPLMVVGTADRNL  103 (112)
Q Consensus        74 -----------~~--------------------------------------~~~~~~~~~~~~~~~-~~~~~~~~~d~~v  103 (112)
                                 ++                                      +.+...++.++|.|. ...+.+++.|..+
T Consensus       233 TIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qa  312 (364)
T KOG0290|consen  233 TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQA  312 (364)
T ss_pred             eEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceE
Confidence                       00                                      112223457888885 4689999999999


Q ss_pred             EEEECcCC
Q 045566          104 VVFNLQNP  111 (112)
Q Consensus       104 ~~~d~~~~  111 (112)
                      .+||+.+.
T Consensus       313 liWDl~q~  320 (364)
T KOG0290|consen  313 LIWDLQQM  320 (364)
T ss_pred             EEEecccc
Confidence            99998753

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.64  E-value=3.8e-15  Score=85.23  Aligned_cols=70  Identities=19%  Similarity=0.314  Sum_probs=62.7

Q ss_pred             CeeEEEcCCC-CEEEEEcCCCcEEEEEcCCCCCcEEE---eeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCC
Q 045566            1 VLCSTWKDDG-TTVFSGGCDKQVKMWPLLSGGQPVTV---AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR   70 (112)
Q Consensus         1 v~~~~~~~~~-~~l~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~   70 (112)
                      |+.+.+.|+. +++++++.|..|++|++++..++..+   .+|...|.++.|++++..+++++.|..+++|++.
T Consensus       138 INeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~  211 (385)
T KOG1034|consen  138 INEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLN  211 (385)
T ss_pred             chhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecC
Confidence            4567888854 68899999999999999999887765   5899999999999999999999999999999987

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=3.2e-14  Score=87.51  Aligned_cols=111  Identities=18%  Similarity=0.264  Sum_probs=92.0

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe--
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ--   78 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~--   78 (112)
                      |.+++|++ +..|++.+.+|.|..||+.+.++...+....+.|.+++.+|.+..++.|++||.+..++....+.....  
T Consensus        72 IE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l  150 (691)
T KOG2048|consen   72 IESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSL  150 (691)
T ss_pred             eeeEEEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeec
Confidence            46789994 556678888999999999999999988888899999999999999999999998888877666544322  


Q ss_pred             ---cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           79 ---QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        79 ---~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                         +..+-++.|++++..++.|+.||.|++||...++
T Consensus       151 ~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~  187 (691)
T KOG2048|consen  151 MRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQ  187 (691)
T ss_pred             ccccceEEEEEecCCccEEEecccCceEEEEEcCCCc
Confidence               1234567788888899999999999999998764

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=3.7e-14  Score=84.21  Aligned_cols=111  Identities=11%  Similarity=0.219  Sum_probs=88.7

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCC--CCCcEEEeeccCCeeEEEEccCCC-EEEEeeCCCcEEEeeCCCCCce--
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLS--GGQPVTVAMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDTRQPNPV--   75 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~i~~w~~~~~~~~--   75 (112)
                      |+++.|+|....+.+++.|+.+++|-+..  +..+..+.-...+|.+..|.|+|. .+++++....++.||+.+.+..  
T Consensus       216 I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~  295 (514)
T KOG2055|consen  216 ITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKL  295 (514)
T ss_pred             ceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccc
Confidence            68999999999999999999999997753  334555666678999999999988 8888999999999999765411  


Q ss_pred             -----------EEe----------------------------------cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           76 -----------HTQ----------------------------------QLPDRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        76 -----------~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                                 ..+                                  .+.+..++|+.++..+++++.+|.|.+||++.
T Consensus       296 ~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~  375 (514)
T KOG2055|consen  296 KPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQ  375 (514)
T ss_pred             cCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCC
Confidence                       000                                  01124678888899999999999999999987


Q ss_pred             C
Q 045566          111 P  111 (112)
Q Consensus       111 ~  111 (112)
                      +
T Consensus       376 ~  376 (514)
T KOG2055|consen  376 N  376 (514)
T ss_pred             c
Confidence            5

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.63  E-value=1e-13  Score=80.12  Aligned_cols=111  Identities=6%  Similarity=0.004  Sum_probs=81.7

Q ss_pred             eeEEEcCCCCEEEEE-cCCCcEEEEEcCCCCCcEEEeecc-------CCeeEEEEccCCCEEEE-eeCCCcEEEeeCCCC
Q 045566            2 LCSTWKDDGTTVFSG-GCDKQVKMWPLLSGGQPVTVAMHD-------APIKEVAWIPEMNLLAT-GSWDKTLKYWDTRQP   72 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~-~~~~~v~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~-~~~~~~i~~w~~~~~   72 (112)
                      .+++|+|+++.++.+ ..++.+.+||+.+++....+..+.       .....+.|+|+++.++. ...++.+.+||.++.
T Consensus       160 ~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~  239 (300)
T TIGR03866       160 RFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY  239 (300)
T ss_pred             cEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence            357899999988554 568999999998877655443221       12346889999987544 445667999999887


Q ss_pred             CceEEe--cCCCeEEEEeeCCCEEEEE-eCCCcEEEEECcCCC
Q 045566           73 NPVHTQ--QLPDRCYALTVRYPLMVVG-TADRNLVVFNLQNPQ  112 (112)
Q Consensus        73 ~~~~~~--~~~~~~~~~~~~~~~~~~~-~~d~~v~~~d~~~~~  112 (112)
                      +.+...  ......+.|+|++.+++++ ..++.|.+||+++++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~  282 (300)
T TIGR03866       240 EVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK  282 (300)
T ss_pred             cEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence            765443  2345678899999998886 458999999998764

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.63  E-value=5.2e-15  Score=87.59  Aligned_cols=111  Identities=14%  Similarity=0.226  Sum_probs=84.1

Q ss_pred             CeeEEEcCCC--CEEEEEcCCCcEEEEEcCCCC----CcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCC
Q 045566            1 VLCSTWKDDG--TTVFSGGCDKQVKMWPLLSGG----QPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPN   73 (112)
Q Consensus         1 v~~~~~~~~~--~~l~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~   73 (112)
                      |++++|+|..  +.+++|...|+|-+||+.+.+    ....+..|..+|.++.|+| +...+++.+.||+|++-|++...
T Consensus       189 it~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i  268 (498)
T KOG4328|consen  189 ITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNI  268 (498)
T ss_pred             eEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchh
Confidence            5799999943  578889999999999996333    2345567899999999999 67788899999999988876432


Q ss_pred             ------------------------------------------------ceEEecCCCeEEEEeeCC-CEEEEEeCCCcEE
Q 045566           74 ------------------------------------------------PVHTQQLPDRCYALTVRY-PLMVVGTADRNLV  104 (112)
Q Consensus        74 ------------------------------------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~v~  104 (112)
                                                                      .+..+...+..++++|.. .++++++.|++.+
T Consensus       269 ~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~k  348 (498)
T KOG4328|consen  269 SEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAK  348 (498)
T ss_pred             hHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCccee
Confidence                                                            000011134578888854 5789999999999


Q ss_pred             EEECcCC
Q 045566          105 VFNLQNP  111 (112)
Q Consensus       105 ~~d~~~~  111 (112)
                      |||+|..
T Consensus       349 IWD~R~l  355 (498)
T KOG4328|consen  349 IWDLRQL  355 (498)
T ss_pred             eeehhhh
Confidence            9999864

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=2.5e-14  Score=78.80  Aligned_cols=101  Identities=23%  Similarity=0.324  Sum_probs=87.6

Q ss_pred             CCCEEEEEcCCCcEEEEEcCCCCCcEEEee-------ccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC-
Q 045566            9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAM-------HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL-   80 (112)
Q Consensus         9 ~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~-   80 (112)
                      ++-.+++|++|.+|++||++-+..+.++..       ..+.|..++..|.|+++++|-.|....+||++.++.++.+.. 
T Consensus       193 n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~ph  272 (350)
T KOG0641|consen  193 NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPH  272 (350)
T ss_pred             cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCC
Confidence            577899999999999999988777665521       236789999999999999999999999999999998877654 


Q ss_pred             --CCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           81 --PDRCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        81 --~~~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                        .++++.|+|...++++++.|..|++-|+.
T Consensus       273 sadir~vrfsp~a~yllt~syd~~ikltdlq  303 (350)
T KOG0641|consen  273 SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ  303 (350)
T ss_pred             ccceeEEEeCCCceEEEEecccceEEEeecc
Confidence              56889999999999999999999998875

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=2.6e-14  Score=90.34  Aligned_cols=110  Identities=22%  Similarity=0.263  Sum_probs=96.5

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      +.+++++-+|+.++.|+.|-.|++-++........+.+|.++|.++.|+|++.++++..-||.+++||+.++.....+..
T Consensus        99 ~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~  178 (933)
T KOG1274|consen   99 IRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTG  178 (933)
T ss_pred             ceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhccc
Confidence            46789999999999999999999999999988899999999999999999999999999999999999988765443321


Q ss_pred             -----------CCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           81 -----------PDRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        81 -----------~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                                 .....+|+|++..++..+.|+.|.+|+...
T Consensus       179 v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~  219 (933)
T KOG1274|consen  179 VDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKG  219 (933)
T ss_pred             CCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCC
Confidence                       235688999988999999999999998654

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.62  E-value=3.2e-15  Score=86.52  Aligned_cols=110  Identities=15%  Similarity=0.261  Sum_probs=89.7

Q ss_pred             CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC-ceEEe
Q 045566            1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN-PVHTQ   78 (112)
Q Consensus         1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~-~~~~~   78 (112)
                      |.++.|+| .-..|++|..|+.+.+||+++..++..+.. ....+.++|+|++-.|.+++.|..++.+|++... ++..+
T Consensus       190 i~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~  268 (433)
T KOG0268|consen  190 ISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVH  268 (433)
T ss_pred             eeEEecCCCcchheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhcccchhh
Confidence            56889999 456778888999999999999988776542 2344789999988899999999999999998754 44444


Q ss_pred             cCC---CeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           79 QLP---DRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        79 ~~~---~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      ..+   +..+.|+|.|.-+++|+.|.+|+||..+.+
T Consensus       269 ~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~  304 (433)
T KOG0268|consen  269 KDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG  304 (433)
T ss_pred             cccceeEEEeccCCCcchhccccccceEEEeecCCC
Confidence            443   356789999999999999999999988765

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=4.4e-14  Score=80.96  Aligned_cols=107  Identities=13%  Similarity=0.234  Sum_probs=80.2

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCC------------------------------------CcEEE--------
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG------------------------------------QPVTV--------   36 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~------------------------------------~~~~~--------   36 (112)
                      |++++|+.+|+.|++++.|+.|++|+++.-.                                    .+..+        
T Consensus        89 vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG  168 (420)
T KOG2096|consen   89 VTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDG  168 (420)
T ss_pred             eeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccC
Confidence            6899999999999999999999999975310                                    00000        


Q ss_pred             ---------------eeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC---CCeEEEEeeCCCEEEEEe
Q 045566           37 ---------------AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL---PDRCYALTVRYPLMVVGT   98 (112)
Q Consensus        37 ---------------~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~   98 (112)
                                     ..|.-.+..+-....+.++++++.|..|.+|+++ ++.+..+..   .....+.+|+|+++++++
T Consensus       169 ~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~g  247 (420)
T KOG2096|consen  169 SGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSG  247 (420)
T ss_pred             CCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEec
Confidence                           0022233444444567899999999999999998 666666644   335667899999999999


Q ss_pred             CCCcEEEEEC
Q 045566           99 ADRNLVVFNL  108 (112)
Q Consensus        99 ~d~~v~~~d~  108 (112)
                      ....|.+|.+
T Consensus       248 FTpDVkVwE~  257 (420)
T KOG2096|consen  248 FTPDVKVWEP  257 (420)
T ss_pred             CCCCceEEEE
Confidence            9999999975

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.62  E-value=1.9e-14  Score=86.44  Aligned_cols=109  Identities=16%  Similarity=0.306  Sum_probs=91.0

Q ss_pred             eEEEcCCCC-EEEEEcCCCcEEEEEcCCCCCcEEE-eeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCceE--E
Q 045566            3 CSTWKDDGT-TVFSGGCDKQVKMWPLLSGGQPVTV-AMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNPVH--T   77 (112)
Q Consensus         3 ~~~~~~~~~-~l~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~~~--~   77 (112)
                      -+.|+|..+ +|.+++.+|.|.+||+....+.... ..|..+...++|+| +..++++.+.|..|.+||.+..+...  .
T Consensus       169 ll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~  248 (673)
T KOG4378|consen  169 LLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT  248 (673)
T ss_pred             EeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee
Confidence            467888655 5677899999999998766665543 57889999999999 67788999999999999998766443  3


Q ss_pred             ecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           78 QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      +..+-..++|.++|.+|+.|...|.|..||+|..
T Consensus       249 y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~  282 (673)
T KOG4378|consen  249 YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRST  282 (673)
T ss_pred             ecCCcceeeecCCceEEEeecCCceEEEEecccC
Confidence            4567789999999999999999999999999864

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=3.6e-14  Score=84.26  Aligned_cols=107  Identities=7%  Similarity=0.131  Sum_probs=93.2

Q ss_pred             eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC--
Q 045566            3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL--   80 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~--   80 (112)
                      .+..++++++|+..+..|.|.+....+++.+..++ -++.+..+.|+.+++.++.++.+|.|.+||++...+++.+..  
T Consensus       308 ~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G  386 (514)
T KOG2055|consen  308 RFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDG  386 (514)
T ss_pred             eeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecC
Confidence            45678999999999999999999988888887776 467889999999999999999999999999999988877753  


Q ss_pred             --CCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           81 --PDRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        81 --~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                        ..+.++.++++.++++|+..|.|.|||.++
T Consensus       387 ~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s  418 (514)
T KOG2055|consen  387 SVHGTSLCISLNGSYLATGSDSGIVNIYDGNS  418 (514)
T ss_pred             ccceeeeeecCCCceEEeccCcceEEEeccch
Confidence              346788889999999999999999999643

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.61  E-value=2.2e-14  Score=81.18  Aligned_cols=110  Identities=20%  Similarity=0.376  Sum_probs=83.5

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCC-cEEEe-----eccCCeeEEEEcc--CCCEEEEeeCCCcEEEeeCCCC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ-PVTVA-----MHDAPIKEVAWIP--EMNLLATGSWDKTLKYWDTRQP   72 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~-~~~~~-----~~~~~v~~~~~~~--~~~~~~~~~~~~~i~~w~~~~~   72 (112)
                      |.|+.|.|++..+++-. +..|.+|++..... ...+.     .++...++-+|+|  ++..+++. .++++..||+++.
T Consensus       126 i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~  203 (370)
T KOG1007|consen  126 INCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTM  203 (370)
T ss_pred             eeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccch
Confidence            57999999999887665 67899999987665 33332     2456678889999  66666554 6889999999987


Q ss_pred             CceEEecC----CCeEEEEeeCCC-EEEEEeCCCcEEEEECcCCC
Q 045566           73 NPVHTQQL----PDRCYALTVRYP-LMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        73 ~~~~~~~~----~~~~~~~~~~~~-~~~~~~~d~~v~~~d~~~~~  112 (112)
                      ++...+..    .++.+.|+|+.+ +|++|+.||.|++||.|+.+
T Consensus       204 ~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk  248 (370)
T KOG1007|consen  204 KKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK  248 (370)
T ss_pred             hhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC
Confidence            76655432    256788888765 67888999999999999764

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.61  E-value=3.1e-15  Score=85.76  Aligned_cols=110  Identities=18%  Similarity=0.380  Sum_probs=92.7

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEE------cCCC----------------------------------CCcEEEeecc
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWP------LLSG----------------------------------GQPVTVAMHD   40 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~------~~~~----------------------------------~~~~~~~~~~   40 (112)
                      |+++.|++++.++++++.|++-+||.      .+.+                                  .++..+.+|.
T Consensus       193 VNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~  272 (481)
T KOG0300|consen  193 VNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHR  272 (481)
T ss_pred             eeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccc
Confidence            67999999999999999999999996      2110                                  1123456788


Q ss_pred             CCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCC---eEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           41 APIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD---RCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        41 ~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      +.|.+..|-..++++++++.|++..+||++++..+..+..+.   +..+-+|..+++++.+.|.+.++||+|.
T Consensus       273 ~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe  345 (481)
T KOG0300|consen  273 AVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE  345 (481)
T ss_pred             cceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchh
Confidence            999999999999999999999999999999999888776654   4556688999999999999999999984

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.61  E-value=1.6e-14  Score=84.45  Aligned_cols=110  Identities=19%  Similarity=0.321  Sum_probs=88.4

Q ss_pred             CeeEEEcCC-CCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566            1 VLCSTWKDD-GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         1 v~~~~~~~~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      |.-++|+|. .+.|++++.|..|.+|++.+++.+.++. |...|.++.|+.+|.++++.+.|..|++||.++++.+....
T Consensus       134 Vg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~  212 (472)
T KOG0303|consen  134 VGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV  212 (472)
T ss_pred             EEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecc
Confidence            346889995 5688999999999999999999888887 99999999999999999999999999999999998876653


Q ss_pred             CC----CeEEEEeeCCCEEEEE---eCCCcEEEEECcCC
Q 045566           80 LP----DRCYALTVRYPLMVVG---TADRNLVVFNLQNP  111 (112)
Q Consensus        80 ~~----~~~~~~~~~~~~~~~~---~~d~~v~~~d~~~~  111 (112)
                      .+    .....|-.++..+-+|   ..++.+.+||..+.
T Consensus       213 ~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl  251 (472)
T KOG0303|consen  213 AHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNL  251 (472)
T ss_pred             cccCCCcceeEEeccCceeeeccccccccceeccCcccc
Confidence            32    2345566677744433   33678889986653

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.61  E-value=5.2e-15  Score=91.27  Aligned_cols=109  Identities=18%  Similarity=0.312  Sum_probs=91.3

Q ss_pred             CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC-ceEEe
Q 045566            1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN-PVHTQ   78 (112)
Q Consensus         1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~-~~~~~   78 (112)
                      |.++.|+| -...|++++.|.+|++||+.+.+....+.+|.+.|..++|+|+|+.+++.+.|+.+++|..+... ++..-
T Consensus       680 I~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg  759 (1012)
T KOG1445|consen  680 ITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEG  759 (1012)
T ss_pred             EEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccC
Confidence            57899999 56788999999999999999999888999999999999999999999999999999999987653 44444


Q ss_pred             cCC----CeEEEEeeCCCEEEEEeCCC----cEEEEECc
Q 045566           79 QLP----DRCYALTVRYPLMVVGTADR----NLVVFNLQ  109 (112)
Q Consensus        79 ~~~----~~~~~~~~~~~~~~~~~~d~----~v~~~d~~  109 (112)
                      +.+    ...+.|..+|+++++.+.|.    .|.+||..
T Consensus       760 ~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq  798 (1012)
T KOG1445|consen  760 KGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQ  798 (1012)
T ss_pred             CCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhh
Confidence            433    35678889999999887764    46666654

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.60  E-value=2.2e-14  Score=86.60  Aligned_cols=111  Identities=17%  Similarity=0.231  Sum_probs=86.9

Q ss_pred             CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCC----------------------------CCcEEEeeccCCeeEEEEccC
Q 045566            1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSG----------------------------GQPVTVAMHDAPIKEVAWIPE   51 (112)
Q Consensus         1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~----------------------------~~~~~~~~~~~~v~~~~~~~~   51 (112)
                      |+|+.|-| +...+.++..+|.+.+||....                            .++......+..|..++|+||
T Consensus       222 vT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~D  301 (636)
T KOG2394|consen  222 VTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPD  301 (636)
T ss_pred             eEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCC
Confidence            57899999 4556777788999999975310                            111122223557889999999


Q ss_pred             CCEEEEeeCCCcEEEeeCCCCCce---EEecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           52 MNLLATGSWDKTLKYWDTRQPNPV---HTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        52 ~~~~~~~~~~~~i~~w~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      |+++++.+.||.++++|+.+.+.+   +.+...-.+++|+|||+++++|+.|--|.||.+...
T Consensus       302 G~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er  364 (636)
T KOG2394|consen  302 GKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER  364 (636)
T ss_pred             CceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccc
Confidence            999999999999999999876543   445566789999999999999999999999987653

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.60  E-value=8.6e-14  Score=79.53  Aligned_cols=110  Identities=20%  Similarity=0.407  Sum_probs=95.1

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCC---CcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC----
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG---QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN----   73 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~----   73 (112)
                      |+|.+|++++..++++.++..|.||.....+   +..++..|...|+.+.|+|..+.+++++.|+.-++|....+.    
T Consensus        13 itchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkp   92 (361)
T KOG1523|consen   13 ITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKP   92 (361)
T ss_pred             eeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeecc
Confidence            6899999999999999999999999987655   455788899999999999999999999999999999984432    


Q ss_pred             --ceEEecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           74 --PVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        74 --~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                        .+..+....+.+.|+|.++.+++|+.-+.|.+|-++.
T Consensus        93 tlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~  131 (361)
T KOG1523|consen   93 TLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQ  131 (361)
T ss_pred             ceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEec
Confidence              3455666778999999999999999999999987654

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.59  E-value=4.9e-14  Score=87.04  Aligned_cols=103  Identities=18%  Similarity=0.287  Sum_probs=77.5

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCC
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP   81 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~   81 (112)
                      .++..-|++ .+++|+.|..|++|.-  ++.+.++.+|.+.|+.+++-++. .|++++.||.|++|++ ++..+..+..+
T Consensus       144 WAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~gh  218 (745)
T KOG0301|consen  144 WAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGH  218 (745)
T ss_pred             eeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeecc
Confidence            345555656 7788899999999964  66777888999999999988764 5778889999999998 55555555444


Q ss_pred             C---eEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           82 D---RCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        82 ~---~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                      .   .++...+++..+++++.|++++||+..
T Consensus       219 tn~vYsis~~~~~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  219 TNFVYSISMALSDGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             ceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence            3   345555677788888899999998743

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.58  E-value=3.6e-13  Score=76.91  Aligned_cols=95  Identities=25%  Similarity=0.305  Sum_probs=83.2

Q ss_pred             EcCCCcEEEEEcCCCCC--cEEEeeccCCeeEEEEccCCCEEEEeeCCCc-EEEeeCCCCCceEEecC-----CCeEEEE
Q 045566           16 GGCDKQVKMWPLLSGGQ--PVTVAMHDAPIKEVAWIPEMNLLATGSWDKT-LKYWDTRQPNPVHTQQL-----PDRCYAL   87 (112)
Q Consensus        16 ~~~~~~v~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-i~~w~~~~~~~~~~~~~-----~~~~~~~   87 (112)
                      |-.-|+|++-|+...+.  ...+..|.+.|.|++.+-+|..+++++..|+ |++||..++..+..+..     ...+++|
T Consensus       155 g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaF  234 (346)
T KOG2111|consen  155 GFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAF  234 (346)
T ss_pred             CCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEe
Confidence            34568999999876554  5778899999999999999999999999998 99999999999888764     3468999


Q ss_pred             eeCCCEEEEEeCCCcEEEEECcC
Q 045566           88 TVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        88 ~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      +|+..++++++..|+++||.++.
T Consensus       235 Sp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  235 SPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             CCCccEEEEEcCCCeEEEEEeec
Confidence            99999999999999999998875

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.58  E-value=8.6e-15  Score=87.03  Aligned_cols=101  Identities=19%  Similarity=0.305  Sum_probs=83.1

Q ss_pred             EEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCC--
Q 045566            4 STWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP--   81 (112)
Q Consensus         4 ~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~--   81 (112)
                      ++-+|-+..+-+|..+|+|.+|.....+++..+..|.++|.++++.++|.+++|.+.|+.+++||+++...++++..+  
T Consensus       257 m~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~  336 (545)
T KOG1272|consen  257 MKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHP  336 (545)
T ss_pred             hhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCC
Confidence            455677778889999999999999999999988899999999999999999999999999999999988776666543  


Q ss_pred             CeEEEEeeCCCEEEEEeCCCcEEEE
Q 045566           82 DRCYALTVRYPLMVVGTADRNLVVF  106 (112)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~d~~v~~~  106 (112)
                      ...++++..+  +++.+....+.+|
T Consensus       337 a~~ls~Sqkg--lLA~~~G~~v~iw  359 (545)
T KOG1272|consen  337 ASNLSLSQKG--LLALSYGDHVQIW  359 (545)
T ss_pred             cccccccccc--ceeeecCCeeeee
Confidence            3445555444  5555566678888

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.58  E-value=4.9e-14  Score=80.49  Aligned_cols=107  Identities=19%  Similarity=0.280  Sum_probs=89.6

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCC---CCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCc---
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSG---GQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP---   74 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~---   74 (112)
                      |+.++|+|..+.|++|+.|..-++|....+   ++...+..+....+++.|+|.++.|++|+..+.|.+|-++....   
T Consensus        58 vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWV  137 (361)
T KOG1523|consen   58 VTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWV  137 (361)
T ss_pred             eeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceeh
Confidence            578999999999999999999999998433   34556667888999999999999999999999999998865531   


Q ss_pred             ----eEEecCCCeEEEEeeCCCEEEEEeCCCcEEEEE
Q 045566           75 ----VHTQQLPDRCYALTVRYPLMVVGTADRNLVVFN  107 (112)
Q Consensus        75 ----~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d  107 (112)
                          ...++..+.++.|+|++-.+++|+.|+.+++|.
T Consensus       138 sKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfS  174 (361)
T KOG1523|consen  138 SKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFS  174 (361)
T ss_pred             hhhhCCccccceeeeeccCCcceecccccCcceeEEE
Confidence                123344568899999999999999999999984

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.57  E-value=1.2e-13  Score=80.52  Aligned_cols=110  Identities=14%  Similarity=0.138  Sum_probs=95.0

Q ss_pred             eeEEEcCC--CCEEEEEcCCCcEEEEEcCCCCC-cEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE-
Q 045566            2 LCSTWKDD--GTTVFSGGCDKQVKMWPLLSGGQ-PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT-   77 (112)
Q Consensus         2 ~~~~~~~~--~~~l~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~-   77 (112)
                      +++.|-+.  ...|+++..-++|++||.+.+.. ...+...+.+++++...|++.++++|...+.+..+|.+.++.... 
T Consensus       206 tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~  285 (412)
T KOG3881|consen  206 TDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG  285 (412)
T ss_pred             ccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccc
Confidence            46778776  78999999999999999987664 456777788999999999999999999999999999998875543 


Q ss_pred             ---ecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           78 ---QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        78 ---~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                         +.+.++.+..+|+.+++++++-|+.++|+|+.+.
T Consensus       286 ~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr  322 (412)
T KOG3881|consen  286 LKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR  322 (412)
T ss_pred             cCCccCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence               3456788999999999999999999999999873

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.57  E-value=3.3e-13  Score=83.52  Aligned_cols=103  Identities=21%  Similarity=0.342  Sum_probs=81.9

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCC
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP   81 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~   81 (112)
                      ..+++-+++ .+++|++||.|++|++ +++.+.+..+|++.+.++....++..+++++.|+++++|+..  .+.+.+..+
T Consensus       183 RgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP  258 (745)
T KOG0301|consen  183 RGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP  258 (745)
T ss_pred             eeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC
Confidence            455665543 4678999999999997 788999999999999999988888899999999999999876  444555444


Q ss_pred             C---eEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           82 D---RCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        82 ~---~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                      .   .+..+-++|. +++|+.||.|++|-.+
T Consensus       259 ttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  259 TTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             ccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence            3   3444445665 8889999999999765

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=1.5e-13  Score=78.85  Aligned_cols=104  Identities=14%  Similarity=0.253  Sum_probs=83.9

Q ss_pred             EEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCC---CC-----CceE
Q 045566            5 TWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR---QP-----NPVH   76 (112)
Q Consensus         5 ~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~---~~-----~~~~   76 (112)
                      -....+.++++++.|..|.+|+++ ++.+..+......-+..+.+|+|+++++++..-.+++|.+-   .+     ....
T Consensus       194 GiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf  272 (420)
T KOG2096|consen  194 GIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVF  272 (420)
T ss_pred             eecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhh
Confidence            344567899999999999999988 77777777666666788899999999999999999999862   11     1222


Q ss_pred             E---ecCCCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           77 T---QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        77 ~---~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                      .   +...+...+|+++.+.+++.+.||++++||..
T Consensus       273 ~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  273 SLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             eeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence            2   33345788999999999999999999999864

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.56  E-value=1.3e-12  Score=75.58  Aligned_cols=109  Identities=13%  Similarity=0.077  Sum_probs=82.5

Q ss_pred             eeEEEcCCCCEE-EEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEE-eeCCCcEEEeeCCCCCceEEec
Q 045566            2 LCSTWKDDGTTV-FSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLAT-GSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         2 ~~~~~~~~~~~l-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      .+++|+|+++.+ ++++.++.+.+||..+++....+..+. .+..+.++|+++.+++ +..++.+.+||+++.+.+..+.
T Consensus        34 ~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~  112 (300)
T TIGR03866        34 RGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP  112 (300)
T ss_pred             CceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee
Confidence            468899999876 566788999999998877665555433 3467889999886654 4568999999998877666554


Q ss_pred             C--CCeEEEEeeCCCEEEEEeCCCc-EEEEECcCC
Q 045566           80 L--PDRCYALTVRYPLMVVGTADRN-LVVFNLQNP  111 (112)
Q Consensus        80 ~--~~~~~~~~~~~~~~~~~~~d~~-v~~~d~~~~  111 (112)
                      .  ....+.++|++..++++..++. +.+||.+++
T Consensus       113 ~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~  147 (300)
T TIGR03866       113 VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTY  147 (300)
T ss_pred             CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCC
Confidence            2  3467889999999998887754 667787654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=2.5e-13  Score=80.01  Aligned_cols=111  Identities=13%  Similarity=0.098  Sum_probs=93.3

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcC------CCCCcEEE-eeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLL------SGGQPVTV-AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN   73 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~------~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~   73 (112)
                      |+++.|+.++++|++|+.|..+++|++.      +.+++... ..|.+.|.|++|......+.+|..+++|.+.|+.+.+
T Consensus        59 iNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~q  138 (609)
T KOG4227|consen   59 INALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQ  138 (609)
T ss_pred             cceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccce
Confidence            5789999999999999999999999974      34555433 3466899999999998999999999999999999988


Q ss_pred             ceEEecC-----CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           74 PVHTQQL-----PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        74 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      .+..+..     .+..+..+|..+.+++.+.++.|.+||.+..
T Consensus       139 si~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~  181 (609)
T KOG4227|consen  139 SIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDR  181 (609)
T ss_pred             eeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCC
Confidence            8765543     3456777888999999999999999998764

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.56  E-value=3.2e-15  Score=94.16  Aligned_cols=105  Identities=20%  Similarity=0.385  Sum_probs=94.5

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCce---EE
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV---HT   77 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~---~~   77 (112)
                      |.|+.|...|+++++|+.|..++||...+..++..+.+|.+.++.++.+.+...+++++.|..|++|-++.+.++   ..
T Consensus       193 Vyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrg  272 (1113)
T KOG0644|consen  193 VYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRG  272 (1113)
T ss_pred             eeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhc
Confidence            578999999999999999999999999999999999999999999999998888999999999999999998765   44


Q ss_pred             ecCCCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           78 QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                      +.+.+++++|+|-.    +.+.||++++||.+
T Consensus       273 htgavtaiafsP~~----sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  273 HTGAVTAIAFSPRA----SSSDDGTCRIWDAR  300 (1113)
T ss_pred             cccceeeeccCccc----cCCCCCceEecccc
Confidence            55667889998865    66889999999987

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.56  E-value=1.1e-12  Score=72.09  Aligned_cols=108  Identities=15%  Similarity=0.274  Sum_probs=75.1

Q ss_pred             eEEEcCCCCEEEEEcC----------CCcEEEEEcCCC-CCcEEEee-ccCCeeEEEEccCCCEEEEe--eCCCcEEEee
Q 045566            3 CSTWKDDGTTVFSGGC----------DKQVKMWPLLSG-GQPVTVAM-HDAPIKEVAWIPEMNLLATG--SWDKTLKYWD   68 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~----------~~~v~~~~~~~~-~~~~~~~~-~~~~v~~~~~~~~~~~~~~~--~~~~~i~~w~   68 (112)
                      .+.|+|+|..|++-..          -+...+|.++.. .+...+.- ..++|.+++|+|++..++..  ..+..+.+||
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd   89 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD   89 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence            5789999987755433          133455555333 23333332 34579999999999887544  4567899999


Q ss_pred             CCCCCceEEecC-CCeEEEEeeCCCEEEEEeCC---CcEEEEECcCC
Q 045566           69 TRQPNPVHTQQL-PDRCYALTVRYPLMVVGTAD---RNLVVFNLQNP  111 (112)
Q Consensus        69 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d---~~v~~~d~~~~  111 (112)
                      ++ .+.+..+.. ....+.|+|+|+++++++.+   |.+.+||.++.
T Consensus        90 ~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~  135 (194)
T PF08662_consen   90 VK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK  135 (194)
T ss_pred             Cc-ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            97 555555543 45689999999999998753   66999999864

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.55  E-value=2.9e-13  Score=84.69  Aligned_cols=70  Identities=19%  Similarity=0.261  Sum_probs=57.1

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEcc---CCCEEEEeeCCCcEEEeeCC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP---EMNLLATGSWDKTLKYWDTR   70 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~i~~w~~~   70 (112)
                      +.+++.+|+|++|++|..-|.+++|++...+....+..|+..|.|+.++.   ..+++++++.|+.|.++|+.
T Consensus       462 ~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~  534 (1080)
T KOG1408|consen  462 FRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK  534 (1080)
T ss_pred             eEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence            46899999999999999999999999987777777777888888888764   34567777778888887764

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.55  E-value=1.8e-13  Score=75.87  Aligned_cols=109  Identities=22%  Similarity=0.305  Sum_probs=84.9

Q ss_pred             eEEEcC--CCCEEEEEcCCCcEEEEEcCCCC--CcEEEeeccCCeeEEEEcc--CCCEEEEeeCCCcEEEeeCCCC----
Q 045566            3 CSTWKD--DGTTVFSGGCDKQVKMWPLLSGG--QPVTVAMHDAPIKEVAWIP--EMNLLATGSWDKTLKYWDTRQP----   72 (112)
Q Consensus         3 ~~~~~~--~~~~l~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~i~~w~~~~~----   72 (112)
                      .++|..  -|.+|++++.|+.|.+|.-..++  .......|...|++++|.|  .|-.+++++.||.|.+.+.++.    
T Consensus        61 qv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~  140 (299)
T KOG1332|consen   61 KVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWT  140 (299)
T ss_pred             EEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCcc
Confidence            455544  78999999999999999866553  2334567899999999999  4667889999999999988765    


Q ss_pred             --CceEEecCCCeEEEEeeC---C-----------CEEEEEeCCCcEEEEECcCC
Q 045566           73 --NPVHTQQLPDRCYALTVR---Y-----------PLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        73 --~~~~~~~~~~~~~~~~~~---~-----------~~~~~~~~d~~v~~~d~~~~  111 (112)
                        +....+...++++++.|.   |           ..|++|+.|..|+||+..++
T Consensus       141 t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~  195 (299)
T KOG1332|consen  141 TSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD  195 (299)
T ss_pred             chhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc
Confidence              233445556777888774   3           36999999999999998764

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.55  E-value=7.8e-15  Score=94.18  Aligned_cols=110  Identities=21%  Similarity=0.372  Sum_probs=85.2

Q ss_pred             eeEEEcCCCCE----EEEEcCCCcEEEEEcCCC------CCcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCC
Q 045566            2 LCSTWKDDGTT----VFSGGCDKQVKMWPLLSG------GQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTR   70 (112)
Q Consensus         2 ~~~~~~~~~~~----l~~~~~~~~v~~~~~~~~------~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~   70 (112)
                      +.++|.+.+..    |+.|.+||.|-+||....      ..+.++..|.+.|..+.|++ .++++++|+.+|.|.+||+.
T Consensus        68 ~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDln  147 (1049)
T KOG0307|consen   68 NKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLN  147 (1049)
T ss_pred             eeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccC
Confidence            46888886654    888999999999997642      23446678999999999999 55699999999999999998


Q ss_pred             CCCceEEe-----cCCCeEEEEeeC-CCEEEEEeCCCcEEEEECcCC
Q 045566           71 QPNPVHTQ-----QLPDRCYALTVR-YPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        71 ~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      +.+.-...     ...+.+++|+.. ...|++++.+|++.|||+|..
T Consensus       148 n~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~  194 (1049)
T KOG0307|consen  148 KPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK  194 (1049)
T ss_pred             CcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC
Confidence            76543333     223456666543 457788888999999999975

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=6.5e-13  Score=81.96  Aligned_cols=111  Identities=14%  Similarity=0.252  Sum_probs=85.6

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcE--EEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV--TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ   78 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~   78 (112)
                      |.+++.+|.+..++.|++||.+..++....+...  .+...++.+.++.|+|++..+++|+.||.|++||...+..++..
T Consensus       113 IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~  192 (691)
T KOG2048|consen  113 IWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHII  192 (691)
T ss_pred             eeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEe
Confidence            4578999999999999999977777765444332  34456789999999999999999999999999999988877633


Q ss_pred             cC-------CCeEEEEee---CCCEEEEEeCCCcEEEEECcCC
Q 045566           79 QL-------PDRCYALTV---RYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        79 ~~-------~~~~~~~~~---~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      ..       ....+.|+-   ....+++|...|.|.+||...+
T Consensus       193 ~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~g  235 (691)
T KOG2048|consen  193 TMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFG  235 (691)
T ss_pred             eecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCc
Confidence            22       123333332   4557999999999999997764

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.55  E-value=2.3e-13  Score=85.10  Aligned_cols=108  Identities=19%  Similarity=0.144  Sum_probs=96.4

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe---eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA---MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ   78 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~   78 (112)
                      ..++..|..+++++++.|..|+||++..++....++   .|++....+...|.|.++++.+.|.++.++|+.+++++...
T Consensus       600 YDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m  679 (1080)
T KOG1408|consen  600 YDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM  679 (1080)
T ss_pred             EEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh
Confidence            467889999999999999999999999999988886   45677889999999999999999999999999999887665


Q ss_pred             cCC---CeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           79 QLP---DRCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        79 ~~~---~~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                      ..+   ++.+.|.++-++|++.+.||-|.+|.+.
T Consensus       680 ~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  680 TGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             cCcchheeeeeecccchhheeecCCceEEEEECc
Confidence            543   5788999999999999999999999874

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.55  E-value=1.2e-13  Score=85.88  Aligned_cols=106  Identities=17%  Similarity=0.243  Sum_probs=85.5

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceE----
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVH----   76 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~----   76 (112)
                      |..++|.|||..++.+.. ..+.+||.+.+..+.++++|...|.|++|+.+|+.+++|+.|..+.+|..+-...++    
T Consensus        15 i~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~   93 (1081)
T KOG1538|consen   15 INDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHN   93 (1081)
T ss_pred             hheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccC
Confidence            567999999999888775 468999999999999999999999999999999999999999999999865332110    


Q ss_pred             ------Eec----------------------------C--CCeEEEEeeCCCEEEEEeCCCcEEEEE
Q 045566           77 ------TQQ----------------------------L--PDRCYALTVRYPLMVVGTADRNLVVFN  107 (112)
Q Consensus        77 ------~~~----------------------------~--~~~~~~~~~~~~~~~~~~~d~~v~~~d  107 (112)
                            .+.                            .  .+.+.+|..+|.+++.|-.||+|.+-+
T Consensus        94 D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRN  160 (1081)
T KOG1538|consen   94 DAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRN  160 (1081)
T ss_pred             CeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeec
Confidence                  000                            0  112456677899999999999998864

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.54  E-value=7.2e-14  Score=82.89  Aligned_cols=107  Identities=22%  Similarity=0.267  Sum_probs=84.4

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCC-cEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCc-----
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ-PVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNP-----   74 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~-----   74 (112)
                      ..+.|+.+...++.+..=|...+||.++.+. ...+..|...|..++++| ...++++++.|++.++||++.-..     
T Consensus       283 s~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~  362 (498)
T KOG4328|consen  283 SSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPF  362 (498)
T ss_pred             eeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcc
Confidence            3456676666666777667899999998776 445566778999999999 666889999999999999986432     


Q ss_pred             eEE--ecCCCeEEEEeeCCCEEEEEeCCCcEEEEEC
Q 045566           75 VHT--QQLPDRCYALTVRYPLMVVGTADRNLVVFNL  108 (112)
Q Consensus        75 ~~~--~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~  108 (112)
                      +..  +...+.+..|+|.+-.+++.+.|..|++||.
T Consensus       363 lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ds  398 (498)
T KOG4328|consen  363 LSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDS  398 (498)
T ss_pred             eecccccceeeeeEEcCCCCceEeeccCCceEEeec
Confidence            222  2335678899998888999999999999997

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=2.9e-13  Score=77.94  Aligned_cols=101  Identities=17%  Similarity=0.179  Sum_probs=79.5

Q ss_pred             CEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEcc--CCCEEEEeeCCCcEEEeeCCCCCceEE-----------
Q 045566           11 TTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP--EMNLLATGSWDKTLKYWDTRQPNPVHT-----------   77 (112)
Q Consensus        11 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~i~~w~~~~~~~~~~-----------   77 (112)
                      ..++++..+|.|++||..+++.+..+++++..+..+.|..  .+..+.+++.||+|++||+|.......           
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            3578888899999999999999999999999999999987  456788999999999999875421100           


Q ss_pred             -------------------------------------------ecCCCeEEEEeeC-CCEEEEEeCCCcEEEEECcCC
Q 045566           78 -------------------------------------------QQLPDRCYALTVR-YPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        78 -------------------------------------------~~~~~~~~~~~~~-~~~~~~~~~d~~v~~~d~~~~  111 (112)
                                                                 +.-.++.+.|+|+ .+.|++|+.||-|.+||+...
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d  198 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD  198 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence                                                       0112357888885 568889999999999998753

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.53  E-value=2.7e-14  Score=84.99  Aligned_cols=109  Identities=13%  Similarity=0.142  Sum_probs=94.8

Q ss_pred             eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCce---EEec
Q 045566            3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV---HTQQ   79 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~---~~~~   79 (112)
                      -+.|-|---+|++++..|.++.-|+.+++.+..+....+.+..+..+|-...+-+|..+|+|.+|......++   ..+.
T Consensus       214 rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~  293 (545)
T KOG1272|consen  214 RLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHR  293 (545)
T ss_pred             hhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcC
Confidence            3556666667889999999999999999998888777788888889998788889999999999999887755   4567


Q ss_pred             CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           80 LPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      .++.+++++++|.++++.+.|..++|||+|+.
T Consensus       294 g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~  325 (545)
T KOG1272|consen  294 GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNF  325 (545)
T ss_pred             CCcceEEECCCCcEEeecccccceeEeeeccc
Confidence            78899999999999999999999999999975

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.53  E-value=1.7e-13  Score=77.69  Aligned_cols=105  Identities=20%  Similarity=0.404  Sum_probs=81.1

Q ss_pred             eEEEcC--CCCEEEEEcCCCcEEEEEcCCCCCcEEE-eeccCCeeEEEEccCCC-EEEEeeCCCcEEEeeCCCCC-ceEE
Q 045566            3 CSTWKD--DGTTVFSGGCDKQVKMWPLLSGGQPVTV-AMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDTRQPN-PVHT   77 (112)
Q Consensus         3 ~~~~~~--~~~~l~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~-~~~~~~~~~~i~~w~~~~~~-~~~~   77 (112)
                      +-+|+|  +++.+++.+ |+++..||+++.+....+ ..|...|..+.|+|+-+ ++++++.|+.|++||.+..+ ++..
T Consensus       175 sg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~e  253 (370)
T KOG1007|consen  175 SGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQE  253 (370)
T ss_pred             ccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccc
Confidence            457888  778887765 689999999987776655 46888899999999554 67899999999999998654 4555


Q ss_pred             ecCCC---eEEEEeeC-CCEEEEEeCCCcEEEEEC
Q 045566           78 QQLPD---RCYALTVR-YPLMVVGTADRNLVVFNL  108 (112)
Q Consensus        78 ~~~~~---~~~~~~~~-~~~~~~~~~d~~v~~~d~  108 (112)
                      +..+.   -++.|+|. .+++++++.|..|.+|..
T Consensus       254 l~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca  288 (370)
T KOG1007|consen  254 LPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCA  288 (370)
T ss_pred             cCCCceEEEEEEecCccceEEEecCCCceeEEEec
Confidence            54432   45667664 567899999999998854

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.53  E-value=2.8e-12  Score=76.26  Aligned_cols=111  Identities=26%  Similarity=0.478  Sum_probs=90.1

Q ss_pred             CeeEEEcCCCCEEEEEcC-CCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCC-EEEEeeCCCcEEEeeCCCCCceE-E
Q 045566            1 VLCSTWKDDGTTVFSGGC-DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDTRQPNPVH-T   77 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~i~~w~~~~~~~~~-~   77 (112)
                      |..++|+|++..++.++. ++.+++|+.........+..|...+.+++|+|++. .+++++.|+.+.+||......+. .
T Consensus       158 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~  237 (466)
T COG2319         158 VTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRST  237 (466)
T ss_pred             EEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeee
Confidence            357899999998888885 99999999988777778888999999999999887 55555899999999988666655 3


Q ss_pred             ecCCCe--EEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           78 QQLPDR--CYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        78 ~~~~~~--~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      +..+..  ...|++++..+++++.|+.+++||++..
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  273 (466)
T COG2319         238 LSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSS  273 (466)
T ss_pred             cCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCC
Confidence            433322  2268888888889999999999998754

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=4.4e-14  Score=90.88  Aligned_cols=111  Identities=23%  Similarity=0.355  Sum_probs=84.3

Q ss_pred             CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCcEEE--eeccCCeeEEEEccC-CCEEEEeeCCCcEEEeeCCCCCceE
Q 045566            1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQPVTV--AMHDAPIKEVAWIPE-MNLLATGSWDKTLKYWDTRQPNPVH   76 (112)
Q Consensus         1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~-~~~~~~~~~~~~i~~w~~~~~~~~~   76 (112)
                      |..+.|++ +++.|++|+.||.|.|||+...+.....  ....+.|.+++|+.. ...|++++.++...+||++..+.+-
T Consensus       119 V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii  198 (1049)
T KOG0307|consen  119 VLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPII  198 (1049)
T ss_pred             eeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccc
Confidence            56789999 5569999999999999999876655444  224578999999984 4567788889999999999987775


Q ss_pred             EecC-----CCeEEEEeeCC-CEEEEEeCCC---cEEEEECcCC
Q 045566           77 TQQL-----PDRCYALTVRY-PLMVVGTADR---NLVVFNLQNP  111 (112)
Q Consensus        77 ~~~~-----~~~~~~~~~~~-~~~~~~~~d~---~v~~~d~~~~  111 (112)
                      .+..     ....+.|+|+. ..+++++.|.   .|.+||+|..
T Consensus       199 ~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a  242 (1049)
T KOG0307|consen  199 KLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA  242 (1049)
T ss_pred             ccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc
Confidence            5543     24578899975 4566666543   4889998753

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.52  E-value=6.8e-14  Score=81.89  Aligned_cols=108  Identities=22%  Similarity=0.331  Sum_probs=87.8

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcC--------C-----CC---CcEEEeeccCCeeEEEEccCCCEEEEeeCCCcE
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLL--------S-----GG---QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTL   64 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~--------~-----~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i   64 (112)
                      |+++.|+|+|..+++|+.++.+.+|-..        +     .+   ....+.+|...+..++|+|++.++++++.|..+
T Consensus        68 VN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~  147 (434)
T KOG1009|consen   68 VNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSV  147 (434)
T ss_pred             eEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceE
Confidence            5789999999999999999999999765        2     11   112345788999999999999999999999999


Q ss_pred             EEeeCCCCCceEEecCC---CeEEEEeeCCCEEEEEeCCCcEEEEEC
Q 045566           65 KYWDTRQPNPVHTQQLP---DRCYALTVRYPLMVVGTADRNLVVFNL  108 (112)
Q Consensus        65 ~~w~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~~v~~~d~  108 (112)
                      ++||+..++.......+   +...+|+|...++++-+.|...+.+.+
T Consensus       148 ~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~  194 (434)
T KOG1009|consen  148 RLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSA  194 (434)
T ss_pred             EEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeee
Confidence            99999999877665443   467888888888888888876665543

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.51  E-value=1.3e-12  Score=78.80  Aligned_cols=104  Identities=15%  Similarity=0.230  Sum_probs=86.4

Q ss_pred             eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe--cC
Q 045566            3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ--QL   80 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~--~~   80 (112)
                      .++.+|+.+++++++.|+.+++|+  ..++..+.. -..+..|+.|+|.+ .++.|...|...+.|.++...+..+  ..
T Consensus       373 gla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~  448 (626)
T KOG2106|consen  373 GLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNE  448 (626)
T ss_pred             eEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCC
Confidence            467889999999999999999999  444444333 45678999999999 9999999999999999886655433  45


Q ss_pred             CCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           81 PDRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      +...+.++|+|.++++|+.|+.|++|-+..
T Consensus       449 ~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~  478 (626)
T KOG2106|consen  449 QLSVVRYSPDGAFLAVGSHDNHIYIYRVSA  478 (626)
T ss_pred             ceEEEEEcCCCCEEEEecCCCeEEEEEECC
Confidence            668899999999999999999999997654

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.51  E-value=5.1e-14  Score=78.79  Aligned_cols=69  Identities=22%  Similarity=0.420  Sum_probs=65.1

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT   69 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~   69 (112)
                      |..+.+-||++.+|+++.|+.+++|+-++.+++..+..|.+.|.+++|+|+...+++++.|..|.+|++
T Consensus       254 v~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  254 VSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            346778899999999999999999999999999999999999999999999999999999999999986

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=1.6e-13  Score=79.33  Aligned_cols=111  Identities=13%  Similarity=0.131  Sum_probs=89.8

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCC----CCcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCc--
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSG----GQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNP--   74 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~--   74 (112)
                      .++.|...++.++.|+.+|.|..+|++..    ........|.+.|+++..-. +++.+++.+.+|.|.+||++..++  
T Consensus       256 fAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~  335 (425)
T KOG2695|consen  256 FALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKK  335 (425)
T ss_pred             HHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhccc
Confidence            35567777899999999999999999865    23345556899999998877 788999999999999999998776  


Q ss_pred             -eEEecCCCeE-----EEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           75 -VHTQQLPDRC-----YALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        75 -~~~~~~~~~~-----~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                       +..++.+++.     ..+++....+++++.|...+||.++.++
T Consensus       336 ~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh  379 (425)
T KOG2695|consen  336 SVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH  379 (425)
T ss_pred             ceeeeecccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence             7777776643     3445566788889999999999998653

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.50  E-value=3.3e-12  Score=75.71  Aligned_cols=110  Identities=21%  Similarity=0.337  Sum_probs=86.0

Q ss_pred             CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCC-CceEE
Q 045566            1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQP-NPVHT   77 (112)
Q Consensus         1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~-~~~~~   77 (112)
                      |.++.|+| ....|++|+.|++|.+.|.+........-...+.|..++|.| ....++++..||.++-+|.|+. +++..
T Consensus       289 Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt  368 (463)
T KOG0270|consen  289 VQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWT  368 (463)
T ss_pred             eeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeE
Confidence            57899999 567899999999999999986443332223567889999999 5567788889999999999986 55554


Q ss_pred             e---cCCCeEEEEeeC-CCEEEEEeCCCcEEEEECcC
Q 045566           78 Q---QLPDRCYALTVR-YPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        78 ~---~~~~~~~~~~~~-~~~~~~~~~d~~v~~~d~~~  110 (112)
                      .   ..++..++++.. ...+.+++.|+.|++|++.-
T Consensus       369 ~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~  405 (463)
T KOG0270|consen  369 LKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDV  405 (463)
T ss_pred             EEeccCCcceEEecCCCCcceeeccccceEEEEeecC
Confidence            4   456677888765 45788899999999998753

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=2.4e-12  Score=81.24  Aligned_cols=110  Identities=11%  Similarity=0.229  Sum_probs=92.1

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCC----CCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCce-
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLS----GGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV-   75 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~-   75 (112)
                      ++|.+++|.+++++++..||.|.+|.-..    ......+..|...|.++.|+++|.++.+|+..+.+-+|.+.++++. 
T Consensus       208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf  287 (792)
T KOG1963|consen  208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQF  287 (792)
T ss_pred             ceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCccc
Confidence            46899999999999999999999996433    1234567889999999999999999999999999999999887632 


Q ss_pred             -EEecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           76 -HTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        76 -~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                       ..+..++..+.++|++........|..|.+....+
T Consensus       288 LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~d  323 (792)
T KOG1963|consen  288 LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASD  323 (792)
T ss_pred             ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccc
Confidence             34455677888999999999999999998876543

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=1.3e-12  Score=72.76  Aligned_cols=71  Identities=11%  Similarity=0.041  Sum_probs=49.0

Q ss_pred             CeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCCe---EEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           42 PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        42 ~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      .|+++...|...-++.++.|+.++-||+++++..+.++.+..   ++........+++|+.||++++||.++++
T Consensus       116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k  189 (325)
T KOG0649|consen  116 EINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQK  189 (325)
T ss_pred             ccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccc
Confidence            455666666444455555788888888888877777766542   22332345579999999999999999864

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.48  E-value=3.4e-13  Score=82.94  Aligned_cols=102  Identities=16%  Similarity=0.233  Sum_probs=82.8

Q ss_pred             CCCEEEEEcCCCcEEEEEcCCCCC------cEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE-----
Q 045566            9 DGTTVFSGGCDKQVKMWPLLSGGQ------PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT-----   77 (112)
Q Consensus         9 ~~~~l~~~~~~~~v~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~-----   77 (112)
                      ..+.|+.+.++|.|.++|......      ......|...|..+.|.|....|++...|.++++||+++.+....     
T Consensus        63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G  142 (720)
T KOG0321|consen   63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLG  142 (720)
T ss_pred             ccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecc
Confidence            346889999999999999765432      234467999999999999777899999999999999998775533     


Q ss_pred             ecCCCeEEEEeeCC-CEEEEEeCCCcEEEEECcC
Q 045566           78 QQLPDRCYALTVRY-PLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        78 ~~~~~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~  110 (112)
                      +...+.+++|.+.. ..+++|+.||.+.|||++-
T Consensus       143 H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~  176 (720)
T KOG0321|consen  143 HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRC  176 (720)
T ss_pred             cccccchhhhccCCCcceeeccCCCcEEEEEEec
Confidence            34456788998855 5778899999999999874

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.44  E-value=4.7e-12  Score=78.65  Aligned_cols=109  Identities=20%  Similarity=0.324  Sum_probs=84.3

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCC----cEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCC--Cc
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ----PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP--NP   74 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~--~~   74 (112)
                      |+-++|+|++++|++.+.|.++.+|.......    ....+.|...|....|+|++.+|+|++.|..|.+|.....  +.
T Consensus       575 VT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~  654 (764)
T KOG1063|consen  575 VTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKY  654 (764)
T ss_pred             EEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhh
Confidence            56799999999999999999999998743322    1235678899999999999999999999999999988766  33


Q ss_pred             eEE-----ecCCCeEEEEee-----CCCEEEEEeCCCcEEEEECc
Q 045566           75 VHT-----QQLPDRCYALTV-----RYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        75 ~~~-----~~~~~~~~~~~~-----~~~~~~~~~~d~~v~~~d~~  109 (112)
                      +..     +...++.+++.+     .+..+++|-..|.|.+|...
T Consensus       655 i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  655 ISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             hhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence            322     233445566554     23367888889999999854

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.43  E-value=1.5e-12  Score=73.02  Aligned_cols=107  Identities=21%  Similarity=0.378  Sum_probs=82.3

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCC----cEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ----PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT   77 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~   77 (112)
                      .++.+.+.-..=++|+.+..+..|++.....    ..++.-....+..+...||++.+++++.|+.|++|+.++.+++..
T Consensus       209 lsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAV  288 (323)
T KOG0322|consen  209 LSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAV  288 (323)
T ss_pred             eeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhh
Confidence            4556665433345667777788888764321    113334456788999999999999999999999999999887654


Q ss_pred             e---cCCCeEEEEeeCCCEEEEEeCCCcEEEEEC
Q 045566           78 Q---QLPDRCYALTVRYPLMVVGTADRNLVVFNL  108 (112)
Q Consensus        78 ~---~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~  108 (112)
                      +   ...+.+++|+|+.+.++.++.|++|.+|++
T Consensus       289 LkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  289 LKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             hhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            4   456789999999999999999999999986

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.42  E-value=7.7e-11  Score=67.67  Aligned_cols=71  Identities=21%  Similarity=0.302  Sum_probs=64.0

Q ss_pred             CeeEEEcCCCCEEEEEcCCCc-EEEEEcCCCCCcEEEe--eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQ-VKMWPLLSGGQPVTVA--MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ   71 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~-v~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~   71 (112)
                      |.|++.+.+|..+|+++..|+ |++||..+++.+.++.  .....+.+++|+|+..+++.++..|++.++.++.
T Consensus       184 Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  184 IACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             eeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            578999999999999999997 6899999999998886  3456799999999999999999999999998764

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.41  E-value=2.8e-11  Score=73.28  Aligned_cols=104  Identities=15%  Similarity=0.246  Sum_probs=86.2

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCc-eE---E
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP-VH---T   77 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~-~~---~   77 (112)
                      .|+.|+|.| .++.|...|...+.|.++... .++....+++++++|+|+|.+++.|+.|+.|++|.+..... ..   .
T Consensus       411 ~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~l-v~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k  488 (626)
T KOG2106|consen  411 ECADFHPSG-VVAVGTATGRWFVLDTETQDL-VTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGK  488 (626)
T ss_pred             eEeeccCcc-eEEEeeccceEEEEeccccee-EEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeee
Confidence            588999999 999999999999999887444 44444488999999999999999999999999998865432 21   1


Q ss_pred             e-cCCCeEEEEeeCCCEEEEEeCCCcEEEEE
Q 045566           78 Q-QLPDRCYALTVRYPLMVVGTADRNLVVFN  107 (112)
Q Consensus        78 ~-~~~~~~~~~~~~~~~~~~~~~d~~v~~~d  107 (112)
                      + ..++..+.|+++++++.+-+.|-.|..|.
T Consensus       489 ~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  489 CSGSPITHLDWSSDSQFLVSNSGDYEILYWK  519 (626)
T ss_pred             ecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence            1 14567889999999999999999999994

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.41  E-value=4.1e-12  Score=77.72  Aligned_cols=112  Identities=15%  Similarity=0.202  Sum_probs=84.9

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe------ecc-----CCeeEEEEccCCCEEEEeeCCCcEEEeeC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA------MHD-----APIKEVAWIPEMNLLATGSWDKTLKYWDT   69 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~------~~~-----~~v~~~~~~~~~~~~~~~~~~~~i~~w~~   69 (112)
                      ++++..++...+|++|+.+|.|..||.+....+.++.      .+.     ..|+++.|+.+|-.++.|..+|.+.+||+
T Consensus       178 lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDL  257 (703)
T KOG2321|consen  178 LNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDL  257 (703)
T ss_pred             ceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEc
Confidence            4678888888899999999999999998776655442      122     24899999999999999999999999999


Q ss_pred             CCCCceEEe----cCCCeEEEEeeCCC-EEEEEeCCCcEEEEECcCCC
Q 045566           70 RQPNPVHTQ----QLPDRCYALTVRYP-LMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        70 ~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~d~~v~~~d~~~~~  112 (112)
                      ++.+++..-    ..++..+.|.+.+. -.+.......++|||-.+|+
T Consensus       258 Ra~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk  305 (703)
T KOG2321|consen  258 RASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGK  305 (703)
T ss_pred             ccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCC
Confidence            998876433    34566677765532 23333445678999987764

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.40  E-value=1.8e-10  Score=67.26  Aligned_cols=70  Identities=14%  Similarity=0.271  Sum_probs=61.3

Q ss_pred             CeeEEEcCCCCEEEEEcCCCc-EEEEEcCCCCCcEEEee--ccCCeeEEEEccCCCEEEEeeCCCcEEEeeCC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQ-VKMWPLLSGGQPVTVAM--HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR   70 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~-v~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~   70 (112)
                      +.|++|+++|.+||++++.|+ |+++.+.+++.+.+++.  ....|.+++|+|+++++.+.+..++|.++.+.
T Consensus       176 lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~  248 (391)
T KOG2110|consen  176 LAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLE  248 (391)
T ss_pred             eeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence            468999999999999999997 68999999998888753  24568899999999999999999999999764

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.39  E-value=2.7e-11  Score=69.89  Aligned_cols=109  Identities=16%  Similarity=0.257  Sum_probs=82.6

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCC-CCCcE---EE----eeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCC
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLS-GGQPV---TV----AMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQP   72 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~-~~~~~---~~----~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~   72 (112)
                      .+++|+|||.+|+.|- +..|+++|+.. +....   ++    .+..+.+.|++|+| +...++.++....+-++.-...
T Consensus       162 hsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~  240 (406)
T KOG2919|consen  162 HSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR  240 (406)
T ss_pred             eeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC
Confidence            5899999999998665 57999999943 33211   11    13357789999999 6668888888888777766666


Q ss_pred             CceEEe---cCCCeEEEEeeCCCEEEEEeC-CCcEEEEECcCC
Q 045566           73 NPVHTQ---QLPDRCYALTVRYPLMVVGTA-DRNLVVFNLQNP  111 (112)
Q Consensus        73 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~-d~~v~~~d~~~~  111 (112)
                      .++..+   ...++.++|.++|+.+++|.. +-.|..||+|..
T Consensus       241 ~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~  283 (406)
T KOG2919|consen  241 RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS  283 (406)
T ss_pred             CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence            555444   456789999999999999876 678999999863

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=3.8e-12  Score=78.19  Aligned_cols=106  Identities=20%  Similarity=0.230  Sum_probs=85.8

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCC-CCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEee------CCCCC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSG-GQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD------TRQPN   73 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~------~~~~~   73 (112)
                      |..++.+|.|.-|+.++.|+.+..+|+.-. ++..++..|...++.++|++.-.+|++|+.|+.+.++.      +....
T Consensus       610 iS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnp  689 (733)
T KOG0650|consen  610 ISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNP  689 (733)
T ss_pred             eeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCC
Confidence            467899999999999999999999998754 45567888999999999999999999999999999884      22222


Q ss_pred             c---eEEecCC-------CeEEEEeeCCCEEEEEeCCCcEEEE
Q 045566           74 P---VHTQQLP-------DRCYALTVRYPLMVVGTADRNLVVF  106 (112)
Q Consensus        74 ~---~~~~~~~-------~~~~~~~~~~~~~~~~~~d~~v~~~  106 (112)
                      .   +..+..+       +-...|+|...++++++.||+|++|
T Consensus       690 liVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  690 LIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             ceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            1   2222222       2345699999999999999999998

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.39  E-value=2.5e-11  Score=73.47  Aligned_cols=111  Identities=14%  Similarity=0.278  Sum_probs=90.4

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeec-cCCeeEEEEccCCC-EEEEeeCCCcEEEeeCCCCCceE--
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMH-DAPIKEVAWIPEMN-LLATGSWDKTLKYWDTRQPNPVH--   76 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~-~~~~~~~~~~i~~w~~~~~~~~~--   76 (112)
                      |+++.++-...+||+++..|.|.+..+.++....++... ...|.-+.|+|..+ ++.+++.+|.|.+||+....++.  
T Consensus       124 vt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~  203 (673)
T KOG4378|consen  124 VTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA  203 (673)
T ss_pred             eEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccch
Confidence            578889888999999999999999999888877766533 45567889999554 66788999999999998877664  


Q ss_pred             --EecCCCeEEEEeeCC-CEEEEEeCCCcEEEEECcCC
Q 045566           77 --TQQLPDRCYALTVRY-PLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        77 --~~~~~~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~  111 (112)
                        .+..+...++|+|.. .++++.+.|.+|.+||.+..
T Consensus       204 ~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~  241 (673)
T KOG4378|consen  204 SEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ  241 (673)
T ss_pred             hhhccCCcCcceecCCccceEEEecccceEEEeecccc
Confidence              345677889999965 46778899999999998753

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.35  E-value=5.7e-11  Score=68.73  Aligned_cols=109  Identities=19%  Similarity=0.318  Sum_probs=80.6

Q ss_pred             eEEEcCCCCEEEEEcC----CCcEEEEEcCCCCC-cEEE-eeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCc-
Q 045566            3 CSTWKDDGTTVFSGGC----DKQVKMWPLLSGGQ-PVTV-AMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNP-   74 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~----~~~v~~~~~~~~~~-~~~~-~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~-   74 (112)
                      |++.+-.++.+++|.+    +-.|.+||.+..+. +..+ ..|...|+++.|+| +...+++|+.||.+.++|++.... 
T Consensus       122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee  201 (376)
T KOG1188|consen  122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE  201 (376)
T ss_pred             EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence            3333335667777753    66799999998776 4433 57999999999999 788999999999999999976531 


Q ss_pred             ---eEEe--cCCCeEEEEeeCC-CEEEEEeCCCcEEEEECcCC
Q 045566           75 ---VHTQ--QLPDRCYALTVRY-PLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        75 ---~~~~--~~~~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~  111 (112)
                         ...+  ...+..+.|...+ ..+.+-+......+|+++.+
T Consensus       202 DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~  244 (376)
T KOG1188|consen  202 DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDG  244 (376)
T ss_pred             hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCC
Confidence               1222  2234566776554 46888889999999998865

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.35  E-value=1.2e-11  Score=76.71  Aligned_cols=110  Identities=22%  Similarity=0.291  Sum_probs=83.6

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcC-CCCCcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCC--CceE
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLL-SGGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQP--NPVH   76 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~--~~~~   76 (112)
                      |.++.++|=+..++..+.|-.+++|... ...++..+..+...+++++|+| ....|+++..+|.+.+||+...  .++.
T Consensus       401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~  480 (555)
T KOG1587|consen  401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVL  480 (555)
T ss_pred             eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcc
Confidence            4678888866555544448999999977 5666666666777799999999 5668888999999999999654  3333


Q ss_pred             EecC---CCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           77 TQQL---PDRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        77 ~~~~---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      ....   ......+++++..+++|...|.+.+|++..
T Consensus       481 s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  481 SQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             cccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            3322   224566777899999999999999999853

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.35  E-value=3.1e-11  Score=69.11  Aligned_cols=106  Identities=17%  Similarity=0.402  Sum_probs=78.1

Q ss_pred             eeEEEcCC---CCEEEEEcCC-----CcEEEEEcCCCC----CcEEEeeccCCeeEEEEccC----CCEEEEeeCCCcEE
Q 045566            2 LCSTWKDD---GTTVFSGGCD-----KQVKMWPLLSGG----QPVTVAMHDAPIKEVAWIPE----MNLLATGSWDKTLK   65 (112)
Q Consensus         2 ~~~~~~~~---~~~l~~~~~~-----~~v~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~----~~~~~~~~~~~~i~   65 (112)
                      .|+.|+|.   ...|++|+.+     +.+.||......    .+.++..|..+|+.++|.|+    ..++++++.|| |+
T Consensus       173 ~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~  251 (361)
T KOG2445|consen  173 FCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VR  251 (361)
T ss_pred             eEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EE
Confidence            47889883   4678888765     478888765443    34467899999999999993    34788999999 99


Q ss_pred             EeeCCCCC-----------------ce---EE---ecCCCeEEEEeeCCCEEEEEeCCCcEEEEEC
Q 045566           66 YWDTRQPN-----------------PV---HT---QQLPDRCYALTVRYPLMVVGTADRNLVVFNL  108 (112)
Q Consensus        66 ~w~~~~~~-----------------~~---~~---~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~  108 (112)
                      +|.++...                 .+   ..   +...+-.+.|+-.|..|.+.+.||.|++|..
T Consensus       252 I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka  317 (361)
T KOG2445|consen  252 IFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA  317 (361)
T ss_pred             EEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence            99987421                 11   11   1223456777778999999999999999953

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.34  E-value=8.8e-11  Score=68.67  Aligned_cols=107  Identities=14%  Similarity=0.265  Sum_probs=80.8

Q ss_pred             CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCC------------cE--EEeeccCCeeEEEEccCCCEEEEeeC-CCcE
Q 045566            1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQ------------PV--TVAMHDAPIKEVAWIPEMNLLATGSW-DKTL   64 (112)
Q Consensus         1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~------------~~--~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~i   64 (112)
                      |+|++|-| .+.-|++|+..| |.+|.......            ..  .-++| .+|++++|.+||..+++++. +..|
T Consensus       143 vtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi  220 (445)
T KOG2139|consen  143 VTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSI  220 (445)
T ss_pred             eeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceE
Confidence            57999999 566788888754 77997642111            11  12233 68999999999999988774 7789


Q ss_pred             EEeeCCCCCceEEe--c-CCCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           65 KYWDTRQPNPVHTQ--Q-LPDRCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        65 ~~w~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                      .+||+.++..+...  . ....-+.|+|++.+++++..|+..++|+..
T Consensus       221 ~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~  268 (445)
T KOG2139|consen  221 MIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQEN  268 (445)
T ss_pred             EEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhc
Confidence            99999988765433  2 234678999999999999999999999644

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.33  E-value=5.2e-10  Score=66.61  Aligned_cols=110  Identities=25%  Similarity=0.453  Sum_probs=84.5

Q ss_pred             CeeEEEcCCCC-EEEEEcCCCcEEEEEcCCCCCcE-EEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCc-eEE
Q 045566            1 VLCSTWKDDGT-TVFSGGCDKQVKMWPLLSGGQPV-TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP-VHT   77 (112)
Q Consensus         1 v~~~~~~~~~~-~l~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~-~~~   77 (112)
                      |.+++|+|++. .+++++.|+.+++||...+.... .+..|.... -..|++++..+++++.++.+++|+.+.... ...
T Consensus       201 v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  279 (466)
T COG2319         201 VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT  279 (466)
T ss_pred             eEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEE
Confidence            46789999888 55555999999999887666655 466676664 337999888888999999999999987664 333


Q ss_pred             e---cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           78 Q---QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        78 ~---~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      .   ........+.|++..+++++.|+.+.+||.++.
T Consensus       280 ~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  316 (466)
T COG2319         280 LSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETG  316 (466)
T ss_pred             EecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCC
Confidence            3   234456688888888888888988999988764

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.33  E-value=9.8e-11  Score=66.79  Aligned_cols=104  Identities=18%  Similarity=0.218  Sum_probs=73.9

Q ss_pred             CeeEEEcCCC-CEEEEEcCCCcEEEEEcCCCC------------------------------------------------
Q 045566            1 VLCSTWKDDG-TTVFSGGCDKQVKMWPLLSGG------------------------------------------------   31 (112)
Q Consensus         1 v~~~~~~~~~-~~l~~~~~~~~v~~~~~~~~~------------------------------------------------   31 (112)
                      |..++|...+ ..+++.+.||.|++||++..+                                                
T Consensus       199 V~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t  278 (364)
T KOG0290|consen  199 VYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT  278 (364)
T ss_pred             eeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc
Confidence            4678898855 477899999999999986321                                                


Q ss_pred             CcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCc------eEE--ecCCCeEEEEeeC-CCEEEEEeCCC
Q 045566           32 QPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNP------VHT--QQLPDRCYALTVR-YPLMVVGTADR  101 (112)
Q Consensus        32 ~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~------~~~--~~~~~~~~~~~~~-~~~~~~~~~d~  101 (112)
                      ++.++..|++.|+.++|.| ...++++++.|....+||+.+...      +..  ....+.-+.|++. +.+++.+. +.
T Consensus       279 pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~-~k  357 (364)
T KOG0290|consen  279 PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICF-GK  357 (364)
T ss_pred             ceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEe-cC
Confidence            1223456899999999999 678999999999999999875322      222  2334567788754 45666554 33


Q ss_pred             cEEE
Q 045566          102 NLVV  105 (112)
Q Consensus       102 ~v~~  105 (112)
                      .+.+
T Consensus       358 klei  361 (364)
T KOG0290|consen  358 KLEI  361 (364)
T ss_pred             eeeE
Confidence            4443

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.32  E-value=2.6e-10  Score=69.60  Aligned_cols=105  Identities=13%  Similarity=0.265  Sum_probs=82.0

Q ss_pred             CeeEEEcCCCCEEEEE--cCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeC---CCcEEEeeCCCCCce
Q 045566            1 VLCSTWKDDGTTVFSG--GCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW---DKTLKYWDTRQPNPV   75 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~i~~w~~~~~~~~   75 (112)
                      |.++.|+|+++-++++  -.-..+.++|++ ++++..+  .+++-+++-|+|.|.+++.++.   .|.|.+||+.+.+.+
T Consensus       273 Vhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i  349 (566)
T KOG2315|consen  273 VHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI  349 (566)
T ss_pred             ceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhc
Confidence            6789999999877654  456679999965 4444333  4567788999999998877654   588999999998888


Q ss_pred             EEecCC-CeEEEEeeCCCEEEEEeC------CCcEEEEEC
Q 045566           76 HTQQLP-DRCYALTVRYPLMVVGTA------DRNLVVFNL  108 (112)
Q Consensus        76 ~~~~~~-~~~~~~~~~~~~~~~~~~------d~~v~~~d~  108 (112)
                      ..+... .+...|+|+|++++++..      |..++||+.
T Consensus       350 ~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy  389 (566)
T KOG2315|consen  350 AKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY  389 (566)
T ss_pred             cccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence            887764 466789999999999865      677889975

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.31  E-value=1e-10  Score=71.32  Aligned_cols=70  Identities=26%  Similarity=0.446  Sum_probs=59.8

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCC----------CcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG----------QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR   70 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~   70 (112)
                      |.|++..+++..+++|+.||+|+.|++....          ....+.+|.+.+..+++++....+++++.||+++.|+..
T Consensus       347 Vl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~  426 (577)
T KOG0642|consen  347 VLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPT  426 (577)
T ss_pred             eEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccC
Confidence            5789999999999999999999999765221          123567899999999999988889999999999999764

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.29  E-value=2.9e-10  Score=64.89  Aligned_cols=110  Identities=19%  Similarity=0.201  Sum_probs=81.1

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCC--CcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCc-eE-
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGG--QPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNP-VH-   76 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~-~~-   76 (112)
                      .++.|++.+..++++..+|.+.+-+.....  ..+..+.|+-+.....|+. +.+.+.+|+.|+.+..||+|.++. +. 
T Consensus       125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~  204 (339)
T KOG0280|consen  125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH  204 (339)
T ss_pred             eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence            367899999999999999999854433322  2346678888888888887 667889999999999999995442 22 


Q ss_pred             ---EecCCCeEEEEe-eCCCEEEEEeCCCcEEEEECcCC
Q 045566           77 ---TQQLPDRCYALT-VRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        77 ---~~~~~~~~~~~~-~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                         .+...+.++.-+ |.+.++++|+.|..|++||.|+.
T Consensus       205 n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm  243 (339)
T KOG0280|consen  205 NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM  243 (339)
T ss_pred             cceeeecceEEEecCCCCCceEEEeccccceeeeehhcc
Confidence               122233333333 35679999999999999999953

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.29  E-value=6.8e-10  Score=65.68  Aligned_cols=108  Identities=12%  Similarity=0.098  Sum_probs=76.4

Q ss_pred             eeEEEcCCCCEEEEEcC-CCcEEEEEcCCCCC----cEEEeeccCCeeEEEEccCCCEEEEe-eCCCcEEEeeCCCCCce
Q 045566            2 LCSTWKDDGTTVFSGGC-DKQVKMWPLLSGGQ----PVTVAMHDAPIKEVAWIPEMNLLATG-SWDKTLKYWDTRQPNPV   75 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~-~~~v~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~i~~w~~~~~~~~   75 (112)
                      ..++++|+++++++++. ++.+.+|++.+...    ...+. .......++++|++++++++ ..++.|.+||+.+...+
T Consensus        83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l  161 (330)
T PRK11028         83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHL  161 (330)
T ss_pred             eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcc
Confidence            35889999998887764 78899999864322    11222 22345778899999887554 45799999999764322


Q ss_pred             E-------Ee--cCCCeEEEEeeCCCEEEEEeC-CCcEEEEECcC
Q 045566           76 H-------TQ--QLPDRCYALTVRYPLMVVGTA-DRNLVVFNLQN  110 (112)
Q Consensus        76 ~-------~~--~~~~~~~~~~~~~~~~~~~~~-d~~v~~~d~~~  110 (112)
                      .       ..  ......+.|+|+++++++.+. ++.|.+||+..
T Consensus       162 ~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~  206 (330)
T PRK11028        162 VAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKD  206 (330)
T ss_pred             cccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence            1       11  112356899999999988876 88999999863

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.29  E-value=4.3e-11  Score=73.12  Aligned_cols=105  Identities=16%  Similarity=0.306  Sum_probs=75.9

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC-
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL-   80 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~-   80 (112)
                      .|-.|+|+|.-|+++++||.|++|. +++-...++.....+|.|++|.|+...++-+. .+.+.+=.+.....+-..+. 
T Consensus       108 ~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAH  185 (737)
T KOG1524|consen  108 SSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAH  185 (737)
T ss_pred             hhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEecc
Confidence            4668999999999999999999998 44544444555678899999999776655443 34455444443333322222 


Q ss_pred             --CCeEEEEeeCCCEEEEEeCCCcEEEEEC
Q 045566           81 --PDRCYALTVRYPLMVVGTADRNLVVFNL  108 (112)
Q Consensus        81 --~~~~~~~~~~~~~~~~~~~d~~v~~~d~  108 (112)
                        -+-++.|++..+.+++|+.|-+.++||-
T Consensus       186 DGiiL~~~W~~~s~lI~sgGED~kfKvWD~  215 (737)
T KOG1524|consen  186 DGLVLSLSWSTQSNIIASGGEDFRFKIWDA  215 (737)
T ss_pred             CcEEEEeecCccccceeecCCceeEEeecc
Confidence              3356778888899999999999999984

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.28  E-value=2.6e-10  Score=66.76  Aligned_cols=98  Identities=13%  Similarity=0.274  Sum_probs=75.1

Q ss_pred             CeeEEEcCCCCEEEEEcC-CCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC-ce--E
Q 045566            1 VLCSTWKDDGTTVFSGGC-DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN-PV--H   76 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~-~~--~   76 (112)
                      |++++|++||..+++++- +..+++||..++..........+.++-+.|+|++..++++.-|+..++|...... ..  .
T Consensus       198 Vtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~  277 (445)
T KOG2139|consen  198 VTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWI  277 (445)
T ss_pred             eeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceeccee
Confidence            678999999999999875 5689999998887655544566788899999999999999999999999654322 11  1


Q ss_pred             EecCCCeEEEEeeCCCEEEEEe
Q 045566           77 TQQLPDRCYALTVRYPLMVVGT   98 (112)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~   98 (112)
                      .....+...+|+|+|+.++...
T Consensus       278 lgsgrvqtacWspcGsfLLf~~  299 (445)
T KOG2139|consen  278 LGSGRVQTACWSPCGSFLLFAC  299 (445)
T ss_pred             ccCCceeeeeecCCCCEEEEEE
Confidence            1233556788999998665543

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.27  E-value=1.9e-10  Score=70.71  Aligned_cols=108  Identities=19%  Similarity=0.279  Sum_probs=84.0

Q ss_pred             EEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC---
Q 045566            4 STWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL---   80 (112)
Q Consensus         4 ~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~---   80 (112)
                      ++++.-..-|..++....|.-+++..+..+..+....+.+.++..++...++++|+.+|.|.+||.+....+..+..   
T Consensus       139 m~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~  218 (703)
T KOG2321|consen  139 MKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASS  218 (703)
T ss_pred             ccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccc
Confidence            34443222344444446788888888888888877778999999999888999999999999999988765544321   


Q ss_pred             -----------CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           81 -----------PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        81 -----------~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                                 .++++.|.-+|-.+++|..+|.+.|||+|+.
T Consensus       219 v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~  260 (703)
T KOG2321|consen  219 VNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS  260 (703)
T ss_pred             cCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC
Confidence                       2467888888999999999999999999975

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.26  E-value=9.8e-10  Score=67.20  Aligned_cols=108  Identities=18%  Similarity=0.223  Sum_probs=71.5

Q ss_pred             CeeEEEcCCCCEEEEEcCC---CcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEee-CCCcEEEe--eCCCCCc
Q 045566            1 VLCSTWKDDGTTVFSGGCD---KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGS-WDKTLKYW--DTRQPNP   74 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~i~~w--~~~~~~~   74 (112)
                      +.+.+|+|+|+.++..+.+   ..|.+||+.+++... +..........+|+|+|+.++.+. .++.+.+|  |+.+++.
T Consensus       206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~  284 (429)
T PRK01742        206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP  284 (429)
T ss_pred             cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe
Confidence            3567999999999887543   469999987765422 222223345689999999887654 57765555  6655443


Q ss_pred             eEEe--cCCCeEEEEeeCCCEEEEEe-CCCcEEEEECc
Q 045566           75 VHTQ--QLPDRCYALTVRYPLMVVGT-ADRNLVVFNLQ  109 (112)
Q Consensus        75 ~~~~--~~~~~~~~~~~~~~~~~~~~-~d~~v~~~d~~  109 (112)
                      ....  ........|+|+++.++..+ .++...+|++.
T Consensus       285 ~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~  322 (429)
T PRK01742        285 SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMS  322 (429)
T ss_pred             EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEE
Confidence            2221  22345788999999776554 56778888754

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.26  E-value=2.7e-11  Score=49.85  Aligned_cols=37  Identities=41%  Similarity=0.708  Sum_probs=34.2

Q ss_pred             CcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEee
Q 045566           32 QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD   68 (112)
Q Consensus        32 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~   68 (112)
                      +..++.+|...|.+++|+|++.++++++.|+.|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            4567889999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.26  E-value=2.6e-10  Score=67.65  Aligned_cols=112  Identities=13%  Similarity=0.114  Sum_probs=88.2

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe--eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC-ceEE
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA--MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN-PVHT   77 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~-~~~~   77 (112)
                      |.|++|+..++++++|..+++|...|+.+.+.+....  ...+.|..+..+|..+.+++.+.++.|.+||.+..+ ++..
T Consensus       108 IF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~  187 (609)
T KOG4227|consen  108 IFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISL  187 (609)
T ss_pred             eEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCce
Confidence            5789999999999999999999999999888766553  234589999999988899999999999999998765 2222


Q ss_pred             e---cC--CCeEEEEeeCC-CEEEEEeCCCcEEEEECcCCC
Q 045566           78 Q---QL--PDRCYALTVRY-PLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        78 ~---~~--~~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      +   ..  .-...-|+|.. .++++.+..+.+.+||.+.++
T Consensus       188 ~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~  228 (609)
T KOG4227|consen  188 VLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQA  228 (609)
T ss_pred             eeecCCCccceeeeecCCCceeEEeccccCCCCceeecccc
Confidence            1   11  22456677754 577888889999999998763

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.26  E-value=4.6e-10  Score=74.00  Aligned_cols=107  Identities=17%  Similarity=0.194  Sum_probs=78.3

Q ss_pred             eEEEcC-CCCEEEEEcCCCcEEEEEcCCCCC-------cEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCC--
Q 045566            3 CSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQ-------PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP--   72 (112)
Q Consensus         3 ~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~--   72 (112)
                      .++.++ ++.++++|+.||+|++|+.+....       ..++......+.++.+.+.+..++.++.||.|.+.++...  
T Consensus      1053 k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~ 1132 (1431)
T KOG1240|consen 1053 KLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNV 1132 (1431)
T ss_pred             ceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccccc
Confidence            344455 568999999999999999864321       2233445678899999999999999999999999877541  


Q ss_pred             Cc-----------------eEE--e-------------------------------------cCCCeEEEEeeCCCEEEE
Q 045566           73 NP-----------------VHT--Q-------------------------------------QLPDRCYALTVRYPLMVV   96 (112)
Q Consensus        73 ~~-----------------~~~--~-------------------------------------~~~~~~~~~~~~~~~~~~   96 (112)
                      +.                 +..  +                                     .+-+++++.+|.+.+++.
T Consensus      1133 ~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~Wlvi 1212 (1431)
T KOG1240|consen 1133 SKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVI 1212 (1431)
T ss_pred             ccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEE
Confidence            10                 000  0                                     001246788888889999


Q ss_pred             EeCCCcEEEEECc
Q 045566           97 GTADRNLVVFNLQ  109 (112)
Q Consensus        97 ~~~d~~v~~~d~~  109 (112)
                      |+..|.+.+||+|
T Consensus      1213 Gts~G~l~lWDLR 1225 (1431)
T KOG1240|consen 1213 GTSRGQLVLWDLR 1225 (1431)
T ss_pred             ecCCceEEEEEee
Confidence            9999999999987

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.26  E-value=1.2e-09  Score=64.59  Aligned_cols=108  Identities=9%  Similarity=0.156  Sum_probs=75.0

Q ss_pred             eeEEEcCCCCEEEEEcC-CCcEEEEEcCCC--CC--cEEEeec------cCCeeEEEEccCCCEEEEeeC-CCcEEEeeC
Q 045566            2 LCSTWKDDGTTVFSGGC-DKQVKMWPLLSG--GQ--PVTVAMH------DAPIKEVAWIPEMNLLATGSW-DKTLKYWDT   69 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~-~~~v~~~~~~~~--~~--~~~~~~~------~~~v~~~~~~~~~~~~~~~~~-~~~i~~w~~   69 (112)
                      ..+.|+|++++++++++ ++.|.+|++...  +.  ...+...      ......+.++|++++++++.. ++.|.+|++
T Consensus       178 ~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i  257 (330)
T PRK11028        178 RHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSV  257 (330)
T ss_pred             ceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEE
Confidence            35789999999988876 899999998742  21  2222211      112235889999998888754 788999998


Q ss_pred             CCCCc----eEEecC--CCeEEEEeeCCCEEEEEeC-CCcEEEEECc
Q 045566           70 RQPNP----VHTQQL--PDRCYALTVRYPLMVVGTA-DRNLVVFNLQ  109 (112)
Q Consensus        70 ~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~-d~~v~~~d~~  109 (112)
                      .....    +.....  ....+.++|+++++++++. ++.|.+|++.
T Consensus       258 ~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        258 SEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             eCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            65431    122111  2357889999999998776 8899999764

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.25  E-value=2.9e-10  Score=67.14  Aligned_cols=107  Identities=17%  Similarity=0.218  Sum_probs=83.3

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcE--------------------------------------EE--e-ec
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV--------------------------------------TV--A-MH   39 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~--------------------------------------~~--~-~~   39 (112)
                      |.++.|+|||++|++-+.| ..++|+..++..+.                                      .+  . .+
T Consensus       189 V~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~  267 (398)
T KOG0771|consen  189 VKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWS  267 (398)
T ss_pred             cccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeec
Confidence            5689999999999999998 89999987651110                                      00  0 01


Q ss_pred             -------------cCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC----CCeEEEEeeCCCEEEEEeCCCc
Q 045566           40 -------------DAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL----PDRCYALTVRYPLMVVGTADRN  102 (112)
Q Consensus        40 -------------~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~d~~  102 (112)
                                   ...+++++.+++|++++.|+.+|.|.+++..+.+.++..+.    -++.+.|.|+.+.+++.+.+.+
T Consensus       268 ~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~  347 (398)
T KOG0771|consen  268 GSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNE  347 (398)
T ss_pred             cccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCc
Confidence                         23788999999999999999999999999988776654433    4578999999998888888887


Q ss_pred             EEEEEC
Q 045566          103 LVVFNL  108 (112)
Q Consensus       103 v~~~d~  108 (112)
                      ..+..+
T Consensus       348 ~~v~~l  353 (398)
T KOG0771|consen  348 AAVTKL  353 (398)
T ss_pred             eeEEEE
Confidence            776544

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.25  E-value=1.4e-09  Score=65.31  Aligned_cols=102  Identities=14%  Similarity=0.103  Sum_probs=75.9

Q ss_pred             CEE-EEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCC--eEEEE
Q 045566           11 TTV-FSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD--RCYAL   87 (112)
Q Consensus        11 ~~l-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~--~~~~~   87 (112)
                      +++ ++-..++.|.+.|..+.+.+.++......-..+.++|+++++...+.|+.+.++|+.+.+.+.......  ..+++
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~   85 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAV   85 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEE
Confidence            344 455678999999999988888887544443457789999999989999999999999999888876644  56888


Q ss_pred             eeCCCEEEEEe-CCCcEEEEECcCCC
Q 045566           88 TVRYPLMVVGT-ADRNLVVFNLQNPQ  112 (112)
Q Consensus        88 ~~~~~~~~~~~-~d~~v~~~d~~~~~  112 (112)
                      +++|+++++++ ..+.+.++|.++.+
T Consensus        86 s~DG~~~~v~n~~~~~v~v~D~~tle  111 (369)
T PF02239_consen   86 SPDGKYVYVANYEPGTVSVIDAETLE  111 (369)
T ss_dssp             --TTTEEEEEEEETTEEEEEETTT--
T ss_pred             cCCCCEEEEEecCCCceeEecccccc
Confidence            99999998876 47889999988754

...

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.25  E-value=9.8e-11  Score=75.45  Aligned_cols=107  Identities=20%  Similarity=0.262  Sum_probs=87.5

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcE-EEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV-TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      |.++.|+.+|+++++.++|..+++|++.+.+... ..-+|...+..+.|.|.  .+++++.|-+.++|+....+ +..+.
T Consensus       178 iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~-l~~y~  254 (967)
T KOG0974|consen  178 IFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQ-LEVYD  254 (967)
T ss_pred             eEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccce-ehhhh
Confidence            3567888899999999999999999999887665 66789999999999988  89999999999999664332 22332


Q ss_pred             C----CCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           80 L----PDRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        80 ~----~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      .    ....+...+....+++++.|+.+++||+..
T Consensus       255 ~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  255 EHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             hhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            2    345677778888999999999999998754

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.23  E-value=2e-10  Score=67.56  Aligned_cols=90  Identities=17%  Similarity=0.218  Sum_probs=66.0

Q ss_pred             cEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCC----CeEEEEeeCCCEEEE
Q 045566           21 QVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP----DRCYALTVRYPLMVV   96 (112)
Q Consensus        21 ~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~   96 (112)
                      .+.+|.... .+...+.+|-+-++.++++||+++++++..|..|++-.....-.+..+...    +..+++-++ ..|++
T Consensus       133 ~~di~s~~~-~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS  210 (390)
T KOG3914|consen  133 SFDILSADS-GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLS  210 (390)
T ss_pred             eeeeecccc-cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeee
Confidence            334444333 334455678899999999999999999999999999877666555544332    344555444 45899


Q ss_pred             EeCCCcEEEEECcCCC
Q 045566           97 GTADRNLVVFNLQNPQ  112 (112)
Q Consensus        97 ~~~d~~v~~~d~~~~~  112 (112)
                      ++.|+++++||+++++
T Consensus       211 ~sGD~tlr~Wd~~sgk  226 (390)
T KOG3914|consen  211 GSGDKTLRLWDITSGK  226 (390)
T ss_pred             cCCCCcEEEEecccCC
Confidence            9999999999999875

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.21  E-value=4.2e-10  Score=73.46  Aligned_cols=107  Identities=15%  Similarity=0.260  Sum_probs=76.9

Q ss_pred             EEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe-eccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCc---eEE-
Q 045566            4 STWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA-MHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNP---VHT-   77 (112)
Q Consensus         4 ~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~---~~~-   77 (112)
                      +.|..+..+|.+++.-..|+|||.........++ +....++++.-+- .|..+++|..||.+++||.+....   +.. 
T Consensus      1171 ~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~ 1250 (1387)
T KOG1517|consen 1171 VDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVY 1250 (1387)
T ss_pred             eehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceee
Confidence            4576655666666667899999988776666554 3344566655443 578999999999999999986543   222 


Q ss_pred             --ecCC--CeEEEEeeCCC-EEEEEeCCCcEEEEECcC
Q 045566           78 --QQLP--DRCYALTVRYP-LMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        78 --~~~~--~~~~~~~~~~~-~~~~~~~d~~v~~~d~~~  110 (112)
                        +...  +..+.+.++|- .+++|+.||.|++||+|.
T Consensus      1251 R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1251 REHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred             cccCCcccceeEEeecCCCcceeeeccCCeEEEEeccc
Confidence              2222  44566666654 499999999999999997

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.21  E-value=4.8e-11  Score=73.53  Aligned_cols=106  Identities=22%  Similarity=0.363  Sum_probs=86.4

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCC-Cc---eE
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP-NP---VH   76 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~-~~---~~   76 (112)
                      |.++.|+|...+|++++. ..|++||+........+......+.+++.+|.|..++.++.|+.+..+|+.-. ++   ++
T Consensus       569 vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr  647 (733)
T KOG0650|consen  569 VQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLR  647 (733)
T ss_pred             eeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhh
Confidence            467899999999999887 57999999876555555545567889999999999999999999999998644 33   33


Q ss_pred             EecCCCeEEEEeeCCCEEEEEeCCCcEEEEE
Q 045566           77 TQQLPDRCYALTVRYPLMVVGTADRNLVVFN  107 (112)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d  107 (112)
                      .+....+.+++++..+++++|+.|+.+.++.
T Consensus       648 ~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  648 LHEKAVRSVAFHKRYPLFASGSDDGTVIVFH  678 (733)
T ss_pred             hhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence            4445568899999999999999999998873

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=3.2e-09  Score=65.11  Aligned_cols=109  Identities=13%  Similarity=0.087  Sum_probs=75.1

Q ss_pred             eeEEEcCCCCEEEEEcC---CCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEE-EeeCCCc--EEEeeCCCCCce
Q 045566            2 LCSTWKDDGTTVFSGGC---DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA-TGSWDKT--LKYWDTRQPNPV   75 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~--i~~w~~~~~~~~   75 (112)
                      .+.+|+|+|+.|+..+.   +..|.+||+.+++. ..+......+....|+|+|+.++ +...++.  |.+||+.+++..
T Consensus       205 ~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~  283 (435)
T PRK05137        205 LTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT  283 (435)
T ss_pred             EeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE
Confidence            56789999998877653   46899999977654 34444556677889999998765 4455544  777788776543


Q ss_pred             EEec--CCCeEEEEeeCCCEEEEEeC-CC--cEEEEECcCC
Q 045566           76 HTQQ--LPDRCYALTVRYPLMVVGTA-DR--NLVVFNLQNP  111 (112)
Q Consensus        76 ~~~~--~~~~~~~~~~~~~~~~~~~~-d~--~v~~~d~~~~  111 (112)
                      ....  .......|+|+++.++..+. ++  .|+++|+..+
T Consensus       284 ~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~  324 (435)
T PRK05137        284 RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS  324 (435)
T ss_pred             EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC
Confidence            3222  22356789999998877664 33  5777887654

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.19  E-value=1.1e-09  Score=70.91  Aligned_cols=102  Identities=12%  Similarity=0.184  Sum_probs=82.2

Q ss_pred             EcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceE----EecCC
Q 045566            6 WKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVH----TQQLP   81 (112)
Q Consensus         6 ~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~----~~~~~   81 (112)
                      ++++.-++++|+--+.+.+|.....+....+.+|++.+..+.++.+|.++++.++|+.+++|++.+.+...    .+.+.
T Consensus       141 ~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaR  220 (967)
T KOG0974|consen  141 DSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSAR  220 (967)
T ss_pred             ccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccce
Confidence            44555678889999999999987555555788999999999999999999999999999999998876554    12223


Q ss_pred             CeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           82 DRCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                      +-..++.|+  .+++++.|.+.++|+..
T Consensus       221 vw~~~~~~n--~i~t~gedctcrvW~~~  246 (967)
T KOG0974|consen  221 VWACCFLPN--RIITVGEDCTCRVWGVN  246 (967)
T ss_pred             eEEEEeccc--eeEEeccceEEEEEecc
Confidence            345566666  89999999999999543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.19  E-value=1.3e-09  Score=66.71  Aligned_cols=104  Identities=10%  Similarity=0.098  Sum_probs=71.4

Q ss_pred             eeEEEcCCCCEEEEE-cCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe-c
Q 045566            2 LCSTWKDDGTTVFSG-GCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ-Q   79 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~-~   79 (112)
                      ...+|+|+|+.++.. ..++...+|++...........+..  ....|+|+++.++..+.++ +..||+.+++..... .
T Consensus       295 ~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~  371 (429)
T PRK01742        295 TEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST  371 (429)
T ss_pred             CCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC
Confidence            467899999977655 4577888887654322222223332  4578999999988777654 556899877643221 1


Q ss_pred             CCCeEEEEeeCCCEEEEEeCCCcEEEEEC
Q 045566           80 LPDRCYALTVRYPLMVVGTADRNLVVFNL  108 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~d~~v~~~d~  108 (112)
                      .......|+|+++.++.++.++...+|++
T Consensus       372 ~~~~~~~~sPdG~~i~~~s~~g~~~~l~~  400 (429)
T PRK01742        372 FLDESPSISPNGIMIIYSSTQGLGKVLQL  400 (429)
T ss_pred             CCCCCceECCCCCEEEEEEcCCCceEEEE
Confidence            23355789999999999999998888765

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.18  E-value=2.1e-10  Score=64.53  Aligned_cols=107  Identities=26%  Similarity=0.302  Sum_probs=79.1

Q ss_pred             CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCcE-EEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCce--
Q 045566            1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQPV-TVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNPV--   75 (112)
Q Consensus         1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~~--   75 (112)
                      |.+++-+| +.+.+++|+.+|.+.+||.+....+. .+..|+.++..+-|+| ++..+++++.||.+..||-.+.-.-  
T Consensus       182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~  261 (319)
T KOG4714|consen  182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSIS  261 (319)
T ss_pred             chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEec
Confidence            45677788 56678889999999999998775443 4578999999999999 7889999999999999997632100  


Q ss_pred             ---------------EE-ec----CCC---eEEEEeeCCCEEEEEeCCCcEEEEE
Q 045566           76 ---------------HT-QQ----LPD---RCYALTVRYPLMVVGTADRNLVVFN  107 (112)
Q Consensus        76 ---------------~~-~~----~~~---~~~~~~~~~~~~~~~~~d~~v~~~d  107 (112)
                                     +. +.    .+.   ....|+--|..+++|+.-+.|++++
T Consensus       262 ~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  262 NQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             CccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence                           00 00    011   2334556688899999888888864

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.17  E-value=1.6e-09  Score=70.87  Aligned_cols=100  Identities=17%  Similarity=0.208  Sum_probs=78.0

Q ss_pred             CCCEEEEEcCCCcEEEEEcCCCCC---cEEEeeccCC--eeEEEEccCCC-EEEEeeCCCcEEEeeCCCCCce--EEec-
Q 045566            9 DGTTVFSGGCDKQVKMWPLLSGGQ---PVTVAMHDAP--IKEVAWIPEMN-LLATGSWDKTLKYWDTRQPNPV--HTQQ-   79 (112)
Q Consensus         9 ~~~~l~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~--v~~~~~~~~~~-~~~~~~~~~~i~~w~~~~~~~~--~~~~-   79 (112)
                      .|+.++.|..||.|++||.+...+   +...+.|...  |..+.+.+.|- .+++|+.+|.|++||++.....  .... 
T Consensus      1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~ 1299 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA 1299 (1387)
T ss_pred             CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee
Confidence            578999999999999999876543   3455667665  89999988654 5999999999999999874211  1111 


Q ss_pred             ----C-CCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           80 ----L-PDRCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        80 ----~-~~~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                          + ..+++..++..+.+++|+. +.|.||++.
T Consensus      1300 ~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1300 HWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS 1333 (1387)
T ss_pred             ccccCccceeeeeccCCCeeeecCc-ceEEEEecC
Confidence                2 3678888999999999998 899999975

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.17  E-value=2.7e-10  Score=66.25  Aligned_cols=71  Identities=20%  Similarity=0.428  Sum_probs=60.4

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCc-EEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQP-VTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ   71 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~   71 (112)
                      +.+++|.|....+++|..|..+.+||+...+-. ..+.+|...|..+...+--+.+++++.|+.|.+|+.+.
T Consensus       200 ~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  200 VTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             eEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence            468999999999999999999999998755443 46678888888888887778899999999999999863

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.17  E-value=8.7e-09  Score=63.14  Aligned_cols=109  Identities=14%  Similarity=0.089  Sum_probs=71.7

Q ss_pred             eeEEEcCCCCEEEEEc---CCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEe-eCCC--cEEEeeCCCCCce
Q 045566            2 LCSTWKDDGTTVFSGG---CDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATG-SWDK--TLKYWDTRQPNPV   75 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~--~i~~w~~~~~~~~   75 (112)
                      .+.+|+|+|+.|+..+   .+..+.++++.+++.. .+...........|+|+|+.++.. ..++  .|.+||+.+++..
T Consensus       202 ~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~  280 (429)
T PRK03629        202 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR  280 (429)
T ss_pred             eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-EccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE
Confidence            4689999999887653   3457889998766532 222233445568999999987754 3344  4888999876544


Q ss_pred             EEec--CCCeEEEEeeCCCEEEEEeCC-Cc--EEEEECcCC
Q 045566           76 HTQQ--LPDRCYALTVRYPLMVVGTAD-RN--LVVFNLQNP  111 (112)
Q Consensus        76 ~~~~--~~~~~~~~~~~~~~~~~~~~d-~~--v~~~d~~~~  111 (112)
                      ....  .......|+|+++.++..+.+ +.  |..+|+..+
T Consensus       281 ~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g  321 (429)
T PRK03629        281 QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG  321 (429)
T ss_pred             EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC
Confidence            3322  234578899999988776654 34  444465543

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.16  E-value=1.8e-10  Score=70.64  Aligned_cols=78  Identities=21%  Similarity=0.360  Sum_probs=65.8

Q ss_pred             cEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCC----eEEEEee--CCCEEEEEeCCCcEEEE
Q 045566           33 PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD----RCYALTV--RYPLMVVGTADRNLVVF  106 (112)
Q Consensus        33 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~d~~v~~~  106 (112)
                      ..++.+|++.|.|++|+.+|.++++|+.|-.+.+||.-..+.++.+....    -+..|-|  +.+++++|..|..|+++
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            34678999999999999999999999999999999998888777765433    3555666  46789999999999999


Q ss_pred             ECcC
Q 045566          107 NLQN  110 (112)
Q Consensus       107 d~~~  110 (112)
                      |+..
T Consensus       123 dl~~  126 (758)
T KOG1310|consen  123 DLDS  126 (758)
T ss_pred             eccc
Confidence            9875

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.15  E-value=2.4e-09  Score=66.84  Aligned_cols=91  Identities=16%  Similarity=0.286  Sum_probs=69.0

Q ss_pred             CcEEEEEcCCCCCcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCc--e-------EEecCCCeEEEEee
Q 045566           20 KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNP--V-------HTQQLPDRCYALTV   89 (112)
Q Consensus        20 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~--~-------~~~~~~~~~~~~~~   89 (112)
                      +.+.+|+++..............|+++.|+| ++.+++.|..+|.|.+||++....  .       ..+..++..+.|..
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~  301 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ  301 (555)
T ss_pred             ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence            4688999988755554455778999999999 778889999999999999987653  1       22333455666655


Q ss_pred             CCC--EEEEEeCCCcEEEEECcC
Q 045566           90 RYP--LMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        90 ~~~--~~~~~~~d~~v~~~d~~~  110 (112)
                      +..  -+++++.||.|..|+++.
T Consensus       302 ~~~~~~f~s~ssDG~i~~W~~~~  324 (555)
T KOG1587|consen  302 NEHNTEFFSLSSDGSICSWDTDM  324 (555)
T ss_pred             cCCCCceEEEecCCcEeeeeccc
Confidence            443  499999999999998764

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.11  E-value=3.2e-08  Score=60.72  Aligned_cols=108  Identities=15%  Similarity=0.162  Sum_probs=70.7

Q ss_pred             eEEEcCCCCEEEEE-cCCC--cEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeC-CCc--EEEeeCCCCCceE
Q 045566            3 CSTWKDDGTTVFSG-GCDK--QVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW-DKT--LKYWDTRQPNPVH   76 (112)
Q Consensus         3 ~~~~~~~~~~l~~~-~~~~--~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~--i~~w~~~~~~~~~   76 (112)
                      ..+|+|+|+.|+.. +.++  .|.+||+.+++. ..+..+...+....|+|+++.++..+. ++.  |..+++.+++...
T Consensus       247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~-~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~  325 (429)
T PRK03629        247 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR  325 (429)
T ss_pred             CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE
Confidence            56899999988754 4344  588889876654 334334456788999999998866554 344  4444666554322


Q ss_pred             Ee-c-CCCeEEEEeeCCCEEEEEeCC---CcEEEEECcCC
Q 045566           77 TQ-Q-LPDRCYALTVRYPLMVVGTAD---RNLVVFNLQNP  111 (112)
Q Consensus        77 ~~-~-~~~~~~~~~~~~~~~~~~~~d---~~v~~~d~~~~  111 (112)
                      .. . .......|+|+++.++..+.+   ..+.+||+.++
T Consensus       326 lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g  365 (429)
T PRK03629        326 ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG  365 (429)
T ss_pred             eecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence            21 1 123457889999988776543   34788898765

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.10  E-value=1.8e-08  Score=61.85  Aligned_cols=109  Identities=15%  Similarity=0.079  Sum_probs=72.4

Q ss_pred             eeEEEcCCCCEEEEEcC---CCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEE-EeeCCC--cEEEeeCCCCCce
Q 045566            2 LCSTWKDDGTTVFSGGC---DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA-TGSWDK--TLKYWDTRQPNPV   75 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~--~i~~w~~~~~~~~   75 (112)
                      .+.+|+|+|+.++..+.   +..+.+|++.+++.. .+...........|+|+|+.++ +.+.++  .|++||+.+++..
T Consensus       207 ~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~  285 (433)
T PRK04922        207 LSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT  285 (433)
T ss_pred             ccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE
Confidence            45789999998887763   346999998766543 2333344455789999998765 444444  5999999876543


Q ss_pred             EEec--CCCeEEEEeeCCCEEEEEeC-CCc--EEEEECcCC
Q 045566           76 HTQQ--LPDRCYALTVRYPLMVVGTA-DRN--LVVFNLQNP  111 (112)
Q Consensus        76 ~~~~--~~~~~~~~~~~~~~~~~~~~-d~~--v~~~d~~~~  111 (112)
                      ....  .......|+|+++.++..+. ++.  ++++|+.++
T Consensus       286 ~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g  326 (433)
T PRK04922        286 RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG  326 (433)
T ss_pred             ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            2211  12346789999998877664 444  666676554

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.09  E-value=6.3e-09  Score=66.40  Aligned_cols=109  Identities=15%  Similarity=0.155  Sum_probs=82.5

Q ss_pred             eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEE----EeeccCCeeEEEEccCCCEEEEeeCCCcEEEee-CC------C
Q 045566            3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVT----VAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD-TR------Q   71 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~-~~------~   71 (112)
                      ++.+++.|.+...... ..+.+|...++.....    -..|.-.+++.+++|.+++++++..||.|.+|. +.      +
T Consensus       165 ~I~~~~~ge~~~i~~~-~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t  243 (792)
T KOG1963|consen  165 SIVDNNSGEFKGIVHM-CKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSET  243 (792)
T ss_pred             cEEEcCCceEEEEEEe-eeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccccc
Confidence            5667777777666554 4577888766442111    123556689999999999999999999999994 33      2


Q ss_pred             CCceEEecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           72 PNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      ...++.+...+.++.|+++|.++++|+..+-+..|.+.+++
T Consensus       244 ~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~  284 (792)
T KOG1963|consen  244 CTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK  284 (792)
T ss_pred             ceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC
Confidence            23455566678899999999999999999999999998864

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.09  E-value=3.6e-08  Score=59.39  Aligned_cols=107  Identities=16%  Similarity=0.162  Sum_probs=73.0

Q ss_pred             eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEee-CCCcEEEeeCCCCCceEEecCC
Q 045566            3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGS-WDKTLKYWDTRQPNPVHTQQLP   81 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~i~~w~~~~~~~~~~~~~~   81 (112)
                      .+.++|+|+++++++.|+.|.++|+.+.+.+.+++... ....++++++|++++.++ ..+.+.++|.++.+.+..+...
T Consensus        41 ~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~  119 (369)
T PF02239_consen   41 GLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTG  119 (369)
T ss_dssp             EEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--
T ss_pred             EEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccc
Confidence            36789999999999999999999999999888876443 457899999999888775 5899999999998887766432


Q ss_pred             ----------CeEEEEeeCCCEEE-EEeCCCcEEEEECcC
Q 045566           82 ----------DRCYALTVRYPLMV-VGTADRNLVVFNLQN  110 (112)
Q Consensus        82 ----------~~~~~~~~~~~~~~-~~~~d~~v~~~d~~~  110 (112)
                                ...+..++....++ ..-..+.|.+-|...
T Consensus       120 ~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d  159 (369)
T PF02239_consen  120 GMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD  159 (369)
T ss_dssp             EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred             cccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence                      12344455655444 444456777777554

...

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.08  E-value=3.1e-08  Score=60.73  Aligned_cols=110  Identities=12%  Similarity=0.068  Sum_probs=69.7

Q ss_pred             eeEEEcCCCCEEE-EEcCCCcEEEEEcCC-CCCcEEEeeccCCeeEEEEccCCCEEEEeeC-CCcEEEeeC--CCCCceE
Q 045566            2 LCSTWKDDGTTVF-SGGCDKQVKMWPLLS-GGQPVTVAMHDAPIKEVAWIPEMNLLATGSW-DKTLKYWDT--RQPNPVH   76 (112)
Q Consensus         2 ~~~~~~~~~~~l~-~~~~~~~v~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~i~~w~~--~~~~~~~   76 (112)
                      ...+|+|+|+.++ +.+.++...+|.+.. ......+..+........|+|+|+.++..+. ++...+|.+  .+++...
T Consensus       243 ~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~  322 (427)
T PRK02889        243 SAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR  322 (427)
T ss_pred             cceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE
Confidence            3578999999876 457777766665432 2234444444445567889999998775543 455566644  4433222


Q ss_pred             E-ecC-CCeEEEEeeCCCEEEEEeCCC---cEEEEECcCC
Q 045566           77 T-QQL-PDRCYALTVRYPLMVVGTADR---NLVVFNLQNP  111 (112)
Q Consensus        77 ~-~~~-~~~~~~~~~~~~~~~~~~~d~---~v~~~d~~~~  111 (112)
                      . ... ......|+|+|++++..+.++   .|.+||+.++
T Consensus       323 lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g  362 (427)
T PRK02889        323 VTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG  362 (427)
T ss_pred             EecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence            1 121 123568999999988776554   5899998765

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=99.08  E-value=2.3e-09  Score=66.02  Aligned_cols=69  Identities=19%  Similarity=0.319  Sum_probs=57.6

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ   71 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~   71 (112)
                      |.|.+++|+...++.|+.||.|.+||...+..  ......-..+.++|+|+|..++.|+..|.+.+||+.-
T Consensus       262 v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  262 VICCARSPSEDKLVLGCEDGSIILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             ceEEecCcccceEEEEecCCeEEEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            56899999999999999999999999765433  2223445568999999999999999999999999753

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.08  E-value=8.8e-10  Score=64.92  Aligned_cols=78  Identities=19%  Similarity=0.245  Sum_probs=64.2

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEE-eeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTV-AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      ++.++|+||+++++++..|..|++-.......+..+ .+|+..|..++.-++. .+++++.|+++++||..+++.++.+.
T Consensus       154 l~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  154 LLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             hheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEecccCCcccccc
Confidence            467999999999999999999999877655544443 5799999999887654 58999999999999999998775543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.07  E-value=4.4e-08  Score=60.19  Aligned_cols=108  Identities=12%  Similarity=0.045  Sum_probs=71.2

Q ss_pred             eEEEcCCCCEEEE-EcCCC--cEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeC-CCc--EEEeeCCCCCceE
Q 045566            3 CSTWKDDGTTVFS-GGCDK--QVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW-DKT--LKYWDTRQPNPVH   76 (112)
Q Consensus         3 ~~~~~~~~~~l~~-~~~~~--~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~--i~~w~~~~~~~~~   76 (112)
                      +.+|+|+|+.++. .+.++  .|.+||+.+++. ..+..+........|+|+++.++..+. ++.  +.++++.+++...
T Consensus       252 ~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~  330 (433)
T PRK04922        252 APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER  330 (433)
T ss_pred             CceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE
Confidence            5689999987754 44444  588899876653 344444445567899999998776553 444  6666776654322


Q ss_pred             E-ecC-CCeEEEEeeCCCEEEEEeCCC---cEEEEECcCC
Q 045566           77 T-QQL-PDRCYALTVRYPLMVVGTADR---NLVVFNLQNP  111 (112)
Q Consensus        77 ~-~~~-~~~~~~~~~~~~~~~~~~~d~---~v~~~d~~~~  111 (112)
                      . ... ......|+|+++.++..+.++   .|.+||+.++
T Consensus       331 lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g  370 (433)
T PRK04922        331 LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG  370 (433)
T ss_pred             eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCC
Confidence            2 111 233578999999888765443   5889998765

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.04  E-value=2e-08  Score=61.55  Aligned_cols=105  Identities=16%  Similarity=0.196  Sum_probs=68.9

Q ss_pred             eeEEEcCCCCEEEEEcC---CCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEE-EeeCCCcEEEe--eCCCCCce
Q 045566            2 LCSTWKDDGTTVFSGGC---DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA-TGSWDKTLKYW--DTRQPNPV   75 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~i~~w--~~~~~~~~   75 (112)
                      .+.+|+|+|+.++..+.   ...+.+||+.+++.. .+...........|+|+|+.++ +.+.++...+|  |+..+. .
T Consensus       199 ~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~  276 (427)
T PRK02889        199 ISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-VVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-L  276 (427)
T ss_pred             ccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-c
Confidence            46789999998887653   346999999877653 3333445567889999998776 55667776666  444433 2


Q ss_pred             EEec---CCCeEEEEeeCCCEEEEEeC-CCcEEEEEC
Q 045566           76 HTQQ---LPDRCYALTVRYPLMVVGTA-DRNLVVFNL  108 (112)
Q Consensus        76 ~~~~---~~~~~~~~~~~~~~~~~~~~-d~~v~~~d~  108 (112)
                      ..+.   .......|+|+++.++..+. ++...+|.+
T Consensus       277 ~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~  313 (427)
T PRK02889        277 RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRM  313 (427)
T ss_pred             EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEE
Confidence            2222   22345789999998776554 455566643

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.04  E-value=5.6e-08  Score=59.61  Aligned_cols=109  Identities=15%  Similarity=0.133  Sum_probs=70.5

Q ss_pred             eeEEEcCCCCEEEEEcCC---CcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEE-EeeCCC--cEEEeeCCCCCce
Q 045566            2 LCSTWKDDGTTVFSGGCD---KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA-TGSWDK--TLKYWDTRQPNPV   75 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~--~i~~w~~~~~~~~   75 (112)
                      ...+|+|+|+.|+..+.+   ..|.+|++.+++.. .+....+......|+|+|+.++ +...++  .|.++|+.+++..
T Consensus       202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~  280 (430)
T PRK00178        202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-QITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS  280 (430)
T ss_pred             eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-EccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence            467899999988765432   46888898766542 2332334455789999998776 444444  5888898876543


Q ss_pred             EEe--cCCCeEEEEeeCCCEEEEEeC-CC--cEEEEECcCC
Q 045566           76 HTQ--QLPDRCYALTVRYPLMVVGTA-DR--NLVVFNLQNP  111 (112)
Q Consensus        76 ~~~--~~~~~~~~~~~~~~~~~~~~~-d~--~v~~~d~~~~  111 (112)
                      ...  ........|+|+++.++..+. ++  .|+++|+.++
T Consensus       281 ~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g  321 (430)
T PRK00178        281 RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG  321 (430)
T ss_pred             EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            221  122345689999987766554 33  4777777654

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=99.04  E-value=5.4e-08  Score=60.24  Aligned_cols=72  Identities=18%  Similarity=0.217  Sum_probs=60.2

Q ss_pred             eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceE-EecCCCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           38 MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVH-TQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        38 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                      ..+..+.+.+++|+...++.|+.||.|.+||...+.... ........++|+|+|..+++|+..|.+.+||+.
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence            456789999999999999999999999999987653322 223345778999999999999999999999964

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.04  E-value=6.2e-09  Score=64.04  Aligned_cols=104  Identities=18%  Similarity=0.383  Sum_probs=76.7

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCce--EEe
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV--HTQ   78 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~--~~~   78 (112)
                      |.|++|.|+.+.++.|.. +++.+=.+.....+...+.|.+-|.++.|++....+++|+.|-..++||-......  ..+
T Consensus       148 v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~  226 (737)
T KOG1524|consen  148 IRCARWAPNSNSIVFCQG-GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAE  226 (737)
T ss_pred             eEEEEECCCCCceEEecC-CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChh
Confidence            579999998877766654 56777777766667778899999999999999999999999999999996432210  000


Q ss_pred             cC-----------------------------CCeEEEEeeCCCEEEEEeCCCcEEE
Q 045566           79 QL-----------------------------PDRCYALTVRYPLMVVGTADRNLVV  105 (112)
Q Consensus        79 ~~-----------------------------~~~~~~~~~~~~~~~~~~~d~~v~~  105 (112)
                      ..                             .+-.++|+++|.++++|+..|.+.+
T Consensus       227 ey~ITSva~npd~~~~v~S~nt~R~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  227 EYAITSVAFNPEKDYLLWSYNTARFSSPRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             ccceeeeeeccccceeeeeeeeeeecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence            11                             1124667778888888888777643

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.00  E-value=8.2e-08  Score=58.55  Aligned_cols=109  Identities=15%  Similarity=0.128  Sum_probs=71.6

Q ss_pred             eeEEEcCCCCEEEEEcCC---CcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEE-EeeCC--CcEEEeeCCCCCce
Q 045566            2 LCSTWKDDGTTVFSGGCD---KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA-TGSWD--KTLKYWDTRQPNPV   75 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~--~~i~~w~~~~~~~~   75 (112)
                      ...+|+|+|++++.....   ..|.+|++.+++.. .+..+...+....|+|+++.++ +...+  ..|++|++.+++..
T Consensus       193 ~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~  271 (417)
T TIGR02800       193 LSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT  271 (417)
T ss_pred             ecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE
Confidence            356799999998876543   47999998776543 2333445566789999998765 44443  35888898776533


Q ss_pred             EEec--CCCeEEEEeeCCCEEEEEeC-CC--cEEEEECcCC
Q 045566           76 HTQQ--LPDRCYALTVRYPLMVVGTA-DR--NLVVFNLQNP  111 (112)
Q Consensus        76 ~~~~--~~~~~~~~~~~~~~~~~~~~-d~--~v~~~d~~~~  111 (112)
                      ....  .......|+++++.++..+. ++  .|+++|+.++
T Consensus       272 ~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~  312 (417)
T TIGR02800       272 RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG  312 (417)
T ss_pred             ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            2222  12345678899988876654 33  5777777654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=98.99  E-value=3.4e-08  Score=62.52  Aligned_cols=106  Identities=20%  Similarity=0.519  Sum_probs=81.5

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe---eccCCeeEEEEccCC-----CEEEEeeCCCcEEEeeCCCC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA---MHDAPIKEVAWIPEM-----NLLATGSWDKTLKYWDTRQP   72 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~-----~~~~~~~~~~~i~~w~~~~~   72 (112)
                      +.+.+|..||.+++.|..||+|.+.+ ..+++...+.   +..++|.+++|+|..     ..++...++.++.++.+...
T Consensus       135 ~~~CsWtnDGqylalG~~nGTIsiRN-k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~  213 (1081)
T KOG1538|consen  135 IICCSWTNDGQYLALGMFNGTISIRN-KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK  213 (1081)
T ss_pred             EEEeeecCCCcEEEEeccCceEEeec-CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce
Confidence            45789999999999999999999997 4455544443   367889999999832     46777788888888887543


Q ss_pred             Cc--eEEecCCCeEEEEeeCCCEEEEEeCCCcEEEEE
Q 045566           73 NP--VHTQQLPDRCYALTVRYPLMVVGTADRNLVVFN  107 (112)
Q Consensus        73 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d  107 (112)
                      ..  -+.+.....++.+-++|++++.|+.|+.+.+|-
T Consensus       214 ~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT  250 (1081)
T KOG1538|consen  214 QIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT  250 (1081)
T ss_pred             eecccccCCCCchhheeccCCcEEEEccCCCceEEEe
Confidence            22  234455556777888999999999999999884

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.99  E-value=2.2e-09  Score=63.28  Aligned_cols=80  Identities=15%  Similarity=0.258  Sum_probs=70.4

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEE-EeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVT-VAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      |+++...|+++++++|...+.+..+|++.++.... +.+..+.++++..+|..+++++++-|++++++|.++.+.++..+
T Consensus       250 is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY  329 (412)
T KOG3881|consen  250 ISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY  329 (412)
T ss_pred             ceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh
Confidence            46788899999999999999999999998887654 78888999999999999999999999999999999977665544


Q ss_pred             C
Q 045566           80 L   80 (112)
Q Consensus        80 ~   80 (112)
                      .
T Consensus       330 v  330 (412)
T KOG3881|consen  330 V  330 (412)
T ss_pred             h
Confidence            3

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.99  E-value=1.1e-07  Score=58.44  Aligned_cols=109  Identities=14%  Similarity=0.164  Sum_probs=70.5

Q ss_pred             eEEEcCCCCEEEEEc-CCCcEEEEE--cCC-CCCcEEEeeccCCeeEEEEccCCCEEEEeeCC---CcEEEeeCCCCCce
Q 045566            3 CSTWKDDGTTVFSGG-CDKQVKMWP--LLS-GGQPVTVAMHDAPIKEVAWIPEMNLLATGSWD---KTLKYWDTRQPNPV   75 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~-~~~~v~~~~--~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~i~~w~~~~~~~~   75 (112)
                      ..+|+|+|+.|+..+ .++...+|.  +.. +.....+......+....|+|+|+.++....+   ..|.+||+.+++..
T Consensus       285 ~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~  364 (428)
T PRK01029        285 NPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY  364 (428)
T ss_pred             CeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE
Confidence            568999999877654 456555554  332 22233444444566788999999988765432   46899999877654


Q ss_pred             EEec--CCCeEEEEeeCCCEEEEEeC---CCcEEEEECcCC
Q 045566           76 HTQQ--LPDRCYALTVRYPLMVVGTA---DRNLVVFNLQNP  111 (112)
Q Consensus        76 ~~~~--~~~~~~~~~~~~~~~~~~~~---d~~v~~~d~~~~  111 (112)
                      ....  .......|+|+++.++....   ...+.++|+..+
T Consensus       365 ~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g  405 (428)
T PRK01029        365 QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITK  405 (428)
T ss_pred             EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            3222  23456789999987765433   345788887664

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.96  E-value=1.5e-07  Score=58.16  Aligned_cols=109  Identities=12%  Similarity=0.083  Sum_probs=69.1

Q ss_pred             eeEEEcCCCCEEEEEcC-C--CcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEE-eeCCCc--EEEeeCCCCCce
Q 045566            2 LCSTWKDDGTTVFSGGC-D--KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLAT-GSWDKT--LKYWDTRQPNPV   75 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~-~--~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~--i~~w~~~~~~~~   75 (112)
                      .+..|+|+|+.++..+. +  ..|.++|+.+++.. .+...........|+|+++.++. ...++.  |.++|+.+++..
T Consensus       221 ~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~  299 (448)
T PRK04792        221 MSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-KVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT  299 (448)
T ss_pred             cCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-EecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE
Confidence            35789999998877643 2  35888888766542 22222333456889999997764 455554  777788766543


Q ss_pred             EEec--CCCeEEEEeeCCCEEEEEeC-CC--cEEEEECcCC
Q 045566           76 HTQQ--LPDRCYALTVRYPLMVVGTA-DR--NLVVFNLQNP  111 (112)
Q Consensus        76 ~~~~--~~~~~~~~~~~~~~~~~~~~-d~--~v~~~d~~~~  111 (112)
                      ....  .......|+|+++.++..+. ++  .++++|+.++
T Consensus       300 ~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g  340 (448)
T PRK04792        300 RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG  340 (448)
T ss_pred             ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            2211  22356789999988766554 33  4666676654

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.95  E-value=2e-07  Score=57.37  Aligned_cols=108  Identities=15%  Similarity=0.088  Sum_probs=70.6

Q ss_pred             eeEEEcCCCCEEE-EEcCCCc--EEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeC-CC--cEEEeeCCCCCce
Q 045566            2 LCSTWKDDGTTVF-SGGCDKQ--VKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW-DK--TLKYWDTRQPNPV   75 (112)
Q Consensus         2 ~~~~~~~~~~~l~-~~~~~~~--v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~--~i~~w~~~~~~~~   75 (112)
                      ...+|+|+|+.++ +.+.++.  |.++|+.+++. ..+..+........|+|+++.++..+. ++  .|+++|+..++..
T Consensus       249 ~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~  327 (435)
T PRK05137        249 FAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR  327 (435)
T ss_pred             cCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE
Confidence            3568999998775 4455554  66778765543 444445555677899999998776553 33  5778887665443


Q ss_pred             EEe--cCCCeEEEEeeCCCEEEEEeCC---CcEEEEECcC
Q 045566           76 HTQ--QLPDRCYALTVRYPLMVVGTAD---RNLVVFNLQN  110 (112)
Q Consensus        76 ~~~--~~~~~~~~~~~~~~~~~~~~~d---~~v~~~d~~~  110 (112)
                      ...  ........|+|+++.++....+   ..|.+||+..
T Consensus       328 ~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~  367 (435)
T PRK05137        328 RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG  367 (435)
T ss_pred             EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCC
Confidence            322  2233457899999988876543   3577788643

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.94  E-value=3.1e-09  Score=72.75  Aligned_cols=68  Identities=26%  Similarity=0.410  Sum_probs=58.3

Q ss_pred             eeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           37 AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        37 ~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      ..|.+.++++++.|..+.+++|+.+|.+++||++..+.++.+..      ++ ...++++++..|.++||++...
T Consensus      2333 ~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2333 TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred             eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh------hh-hhheeeccCcccceEEEEcccc
Confidence            56888999999999999999999999999999998877766644      44 5678999999999999998764

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.91  E-value=4.1e-07  Score=55.54  Aligned_cols=109  Identities=13%  Similarity=0.072  Sum_probs=71.4

Q ss_pred             eeEEEcCCCCEEEE-EcCCC--cEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeC-CC--cEEEeeCCCCCce
Q 045566            2 LCSTWKDDGTTVFS-GGCDK--QVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW-DK--TLKYWDTRQPNPV   75 (112)
Q Consensus         2 ~~~~~~~~~~~l~~-~~~~~--~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~--~i~~w~~~~~~~~   75 (112)
                      .+.+|+|+++.|+. .+.++  .+.+|++.++.. ..+..+........|+|+++.++..+. .+  .|.++++.+.+..
T Consensus       237 ~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~  315 (417)
T TIGR02800       237 GAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR  315 (417)
T ss_pred             cceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence            35789999987764 44443  588888776543 333334444456789999988765543 33  5777888766543


Q ss_pred             EEe--cCCCeEEEEeeCCCEEEEEeCCC---cEEEEECcCC
Q 045566           76 HTQ--QLPDRCYALTVRYPLMVVGTADR---NLVVFNLQNP  111 (112)
Q Consensus        76 ~~~--~~~~~~~~~~~~~~~~~~~~~d~---~v~~~d~~~~  111 (112)
                      ...  ........|+|++..++..+.++   .|.+||+.++
T Consensus       316 ~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~  356 (417)
T TIGR02800       316 RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG  356 (417)
T ss_pred             EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC
Confidence            222  12234678899999988887765   6888887654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.91  E-value=4.2e-07  Score=61.27  Aligned_cols=109  Identities=13%  Similarity=0.092  Sum_probs=77.2

Q ss_pred             eEEEcCCCCEE-EEEcCCCcEEEEEcCCCCCcEEEe------------e---------ccCCeeEEEEccCCCEEEEeeC
Q 045566            3 CSTWKDDGTTV-FSGGCDKQVKMWPLLSGGQPVTVA------------M---------HDAPIKEVAWIPEMNLLATGSW   60 (112)
Q Consensus         3 ~~~~~~~~~~l-~~~~~~~~v~~~~~~~~~~~~~~~------------~---------~~~~v~~~~~~~~~~~~~~~~~   60 (112)
                      .++++|++..+ ++-..++.|++||+.++.......            +         .-.....++++++|..+++-..
T Consensus       744 GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~  823 (1057)
T PLN02919        744 GISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY  823 (1057)
T ss_pred             EEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC
Confidence            58899998855 455667899999987654211100            0         0112357889999998888889


Q ss_pred             CCcEEEeeCCCCCceEEec----------------CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           61 DKTLKYWDTRQPNPVHTQQ----------------LPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        61 ~~~i~~w~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      ++.|++||..+........                .....++++++|+.+++-+.++.|++||++++
T Consensus       824 N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~  890 (1057)
T PLN02919        824 NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG  890 (1057)
T ss_pred             CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence            9999999987665432111                02246788999998888888999999999875

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.91  E-value=3.4e-07  Score=52.32  Aligned_cols=111  Identities=13%  Similarity=-0.024  Sum_probs=79.9

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCC-CcEE--EeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE-
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGG-QPVT--VAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT-   77 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~-~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~-   77 (112)
                      .+++++++++++++.+....|..|.+.... .+..  .......-.+..|+.....++++..||++.+||++.....+. 
T Consensus       162 ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~  241 (344)
T KOG4532|consen  162 NSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAE  241 (344)
T ss_pred             eeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhh
Confidence            467899999999999999999999886543 2222  222334446788998888999999999999999987653322 


Q ss_pred             -------ecCCCeEEEEeeCCC--EEEEEeCCCcEEEEECcCCC
Q 045566           78 -------QQLPDRCYALTVRYP--LMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        78 -------~~~~~~~~~~~~~~~--~~~~~~~d~~v~~~d~~~~~  112 (112)
                             +.+..+...|++-|.  +|+..-.-+.+.+.|+|++.
T Consensus       242 ~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~  285 (344)
T KOG4532|consen  242 ISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV  285 (344)
T ss_pred             hcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence                   233456778887553  45555555678899988763

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.87  E-value=1.4e-07  Score=63.03  Aligned_cols=112  Identities=13%  Similarity=0.168  Sum_probs=80.3

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe-eccCCeeEEEEccC-C--CEEEEe-e-CCCcEEEeeCCCCCc
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA-MHDAPIKEVAWIPE-M--NLLATG-S-WDKTLKYWDTRQPNP   74 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~-~--~~~~~~-~-~~~~i~~w~~~~~~~   74 (112)
                      |++++.+|.+++++.|...|.+.+||++-+.++.... .+..++..+..+|- +  ...+++ . ..+.+.+|++.++.+
T Consensus      1198 vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1198 VTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred             eeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence            5789999999999999999999999998777766543 34577888888772 2  344444 3 578899999988754


Q ss_pred             eEEecCC-----------C-----------eEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           75 VHTQQLP-----------D-----------RCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        75 ~~~~~~~-----------~-----------~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      ...+...           .           ...++...+..+++|+.|..|+.||...++
T Consensus      1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred             eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence            3332111           1           122333345689999999999999987763

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=98.87  E-value=1.5e-08  Score=59.14  Aligned_cols=106  Identities=10%  Similarity=0.044  Sum_probs=78.3

Q ss_pred             EEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEe-eCCCcEEEeeCCCCCceEEec---
Q 045566            4 STWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATG-SWDKTLKYWDTRQPNPVHTQQ---   79 (112)
Q Consensus         4 ~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~i~~w~~~~~~~~~~~~---   79 (112)
                      .+|+|+|+++|++++- .+.+.|..+-+..+.+. --..|.-+.|..+..+++.+ ..++.|.+|++....-...+.   
T Consensus        14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~   91 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ   91 (447)
T ss_pred             eeECCCCCeeeeeeee-EEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC
Confidence            5799999999999875 78888876655433222 23456778888877766554 567799999998877555553   


Q ss_pred             CCCeEEEEeeCCCE-EEEEeCCCcEEEEECcCC
Q 045566           80 LPDRCYALTVRYPL-MVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        80 ~~~~~~~~~~~~~~-~~~~~~d~~v~~~d~~~~  111 (112)
                      .+....+|+|+|+. +.+...+-+|.+|.+.+.
T Consensus        92 agls~~~WSPdgrhiL~tseF~lriTVWSL~t~  124 (447)
T KOG4497|consen   92 AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ  124 (447)
T ss_pred             CcceeeeECCCcceEeeeecceeEEEEEEeccc
Confidence            34578899999964 556677999999998764

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.86  E-value=4.4e-08  Score=56.28  Aligned_cols=71  Identities=24%  Similarity=0.452  Sum_probs=56.3

Q ss_pred             EEcC-CCCEEEEEcCCCcEEEEEcCCCC-CcEE-EeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCC-CCce
Q 045566            5 TWKD-DGTTVFSGGCDKQVKMWPLLSGG-QPVT-VAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQ-PNPV   75 (112)
Q Consensus         5 ~~~~-~~~~l~~~~~~~~v~~~~~~~~~-~~~~-~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~-~~~~   75 (112)
                      .|+. +.+.+.+|+.|+.+..||++.++ .+.. .+.|...|.++.-+| .+.++++|+.|..|++||.|+ ++++
T Consensus       172 ~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl  247 (339)
T KOG0280|consen  172 KFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPL  247 (339)
T ss_pred             ecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcc
Confidence            3444 44788999999999999998443 3332 457889999999887 788999999999999999984 4444

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.86  E-value=9.2e-07  Score=54.38  Aligned_cols=108  Identities=16%  Similarity=0.070  Sum_probs=69.8

Q ss_pred             eEEEcCCCCEEEE-EcCCC--cEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeC-CC--cEEEeeCCCCCceE
Q 045566            3 CSTWKDDGTTVFS-GGCDK--QVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW-DK--TLKYWDTRQPNPVH   76 (112)
Q Consensus         3 ~~~~~~~~~~l~~-~~~~~--~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~--~i~~w~~~~~~~~~   76 (112)
                      ..+|+|+|+.++. .+.++  .+.++|+.+++. ..+..+........|+|+++.++..+. ++  .|+++++.+++...
T Consensus       247 ~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~  325 (430)
T PRK00178        247 APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER  325 (430)
T ss_pred             CeEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence            5789999998764 44444  577888876553 334444455667789999987765443 33  47777876665432


Q ss_pred             Ee-cC-CCeEEEEeeCCCEEEEEeCC-C--cEEEEECcCC
Q 045566           77 TQ-QL-PDRCYALTVRYPLMVVGTAD-R--NLVVFNLQNP  111 (112)
Q Consensus        77 ~~-~~-~~~~~~~~~~~~~~~~~~~d-~--~v~~~d~~~~  111 (112)
                      .. .. ......|+|+++.++..+.+ +  .|.++|+.++
T Consensus       326 lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg  365 (430)
T PRK00178        326 VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG  365 (430)
T ss_pred             eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCC
Confidence            21 11 12346789999988776653 2  4778888765

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=98.85  E-value=1e-07  Score=55.77  Aligned_cols=98  Identities=15%  Similarity=0.323  Sum_probs=75.0

Q ss_pred             eeEEEcCCCCEEEE-EcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEE-EeeCCCcEEEeeCCCCCceEE--
Q 045566            2 LCSTWKDDGTTVFS-GGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA-TGSWDKTLKYWDTRQPNPVHT--   77 (112)
Q Consensus         2 ~~~~~~~~~~~l~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~i~~w~~~~~~~~~~--   77 (112)
                      .-+.|..+..++.+ ...++.|.+|++...+--..+.....++..+.|+|+|++++ +...+-.|.+|.+.+.+....  
T Consensus        52 ~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~  131 (447)
T KOG4497|consen   52 VYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH  131 (447)
T ss_pred             hheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc
Confidence            34677777665544 46788999999988887778887888999999999997665 455688899999988775432  


Q ss_pred             ecCCCeEEEEeeCCCEEEEEeC
Q 045566           78 QQLPDRCYALTVRYPLMVVGTA   99 (112)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~   99 (112)
                      .+......+|+++|++.+.++.
T Consensus       132 pK~~~kg~~f~~dg~f~ai~sR  153 (447)
T KOG4497|consen  132 PKTNVKGYAFHPDGQFCAILSR  153 (447)
T ss_pred             cccCceeEEECCCCceeeeeec
Confidence            2345678899999987766543

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.85  E-value=7.9e-09  Score=42.29  Aligned_cols=26  Identities=27%  Similarity=0.712  Sum_probs=24.7

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEE
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWP   26 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~   26 (112)
                      |.+++|+|+++++++++.|+.|++||
T Consensus        14 i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen   14 INSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEEecccccceeeCCCCEEEEEC
Confidence            57899999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.85  E-value=7.2e-08  Score=61.59  Aligned_cols=104  Identities=16%  Similarity=0.251  Sum_probs=79.0

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCC---------------cEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEE
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ---------------PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKY   66 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~---------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~   66 (112)
                      .|++|+.+..++++|+.||.+++..+.+...               .+++.+|...|.-+.|+...+.+-+...+|.|.+
T Consensus        18 ~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiV   97 (1189)
T KOG2041|consen   18 HCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIV   97 (1189)
T ss_pred             EEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEE
Confidence            5899999999999999999999987643211               2356789999999999998888889999999999


Q ss_pred             eeCCCCCceEE-----ecCCCeEEEEeeCCCEEEEEeCCCcEEE
Q 045566           67 WDTRQPNPVHT-----QQLPDRCYALTVRYPLMVVGTADRNLVV  105 (112)
Q Consensus        67 w~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~d~~v~~  105 (112)
                      |-+-.+.....     .+..+.+++|..+|..+...-.||.|.+
T Consensus        98 WmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIV  141 (1189)
T KOG2041|consen   98 WMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIV  141 (1189)
T ss_pred             EeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEE
Confidence            99877653321     1223456777777877666666666543

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.84  E-value=8.1e-09  Score=58.38  Aligned_cols=70  Identities=13%  Similarity=0.165  Sum_probs=55.3

Q ss_pred             cCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCce----EEecCCCeEEEEee-CCCEEEEEeCCCcEEEEECc
Q 045566           40 DAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNPV----HTQQLPDRCYALTV-RYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        40 ~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~d~~v~~~d~~  109 (112)
                      ...|++++-+| ....+++|+.+|.+.+||.++....    ..++.+..-+.|+| ++..|++++.||.+..||..
T Consensus       179 ~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas  254 (319)
T KOG4714|consen  179 LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS  254 (319)
T ss_pred             cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence            34589999999 4556678888999999999876422    33455667788988 57799999999999999976

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.83  E-value=5.6e-08  Score=67.03  Aligned_cols=110  Identities=16%  Similarity=0.224  Sum_probs=82.6

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe-eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC-------
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA-MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN-------   73 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~-------   73 (112)
                      .++.=+|...+.++|+.||.+++|.-..++.+.... .....++.+.|+.+|..+..+..||.+.+|......       
T Consensus      2212 ~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qch 2291 (2439)
T KOG1064|consen 2212 RRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCH 2291 (2439)
T ss_pred             eeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcceeccccC
Confidence            345556777889999999999999877777666553 233778888898888888888899999988754211       


Q ss_pred             --------------------------------------ceE-EecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           74 --------------------------------------PVH-TQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        74 --------------------------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                                                            .++ .+....+++++.|..+.+++|+.+|.|++||++..
T Consensus      2292 nk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqr 2368 (2439)
T KOG1064|consen 2292 NKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQR 2368 (2439)
T ss_pred             CccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHH
Confidence                                                  001 11123467888899999999999999999999853

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.83  E-value=1.1e-06  Score=52.63  Aligned_cols=102  Identities=17%  Similarity=0.092  Sum_probs=77.0

Q ss_pred             CCCEEEEEcCC-----CcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeC----------CCcEEEeeCCCCC
Q 045566            9 DGTTVFSGGCD-----KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW----------DKTLKYWDTRQPN   73 (112)
Q Consensus         9 ~~~~l~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----------~~~i~~w~~~~~~   73 (112)
                      +++.+++....     +.|.+.|..+.+.+.++..-..+- .+ ++|+++.+..+..          +..|.+||..+.+
T Consensus        11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~   88 (352)
T TIGR02658        11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL   88 (352)
T ss_pred             CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc
Confidence            45555555443     789999999888887776444443 34 9999987766654          7889999999999


Q ss_pred             ceEEecCCCe----------EEEEeeCCCEEEEEeC--CCcEEEEECcCCC
Q 045566           74 PVHTQQLPDR----------CYALTVRYPLMVVGTA--DRNLVVFNLQNPQ  112 (112)
Q Consensus        74 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~--d~~v~~~d~~~~~  112 (112)
                      .+..+..+..          .+.++++|+++++...  +..|.+.|+.+++
T Consensus        89 ~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~k  139 (352)
T TIGR02658        89 PIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKA  139 (352)
T ss_pred             EEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCc
Confidence            8877765332          7889999999998774  6789999998764

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.82  E-value=3.3e-07  Score=58.80  Aligned_cols=100  Identities=18%  Similarity=0.224  Sum_probs=73.2

Q ss_pred             CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccC-----CCEEEEeeCCCcEEEeeCC---CCCceEEecC
Q 045566            9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPE-----MNLLATGSWDKTLKYWDTR---QPNPVHTQQL   80 (112)
Q Consensus         9 ~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~i~~w~~~---~~~~~~~~~~   80 (112)
                      +|.++++|+.||.|.+..+-+.+....+. ...++.+++++|+     .+++++|+..| +.++.-+   +...+.....
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~  159 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEG  159 (846)
T ss_pred             CCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecC
Confidence            68999999999999999887777665554 4568899999997     56889999998 7666432   2223323333


Q ss_pred             CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           81 PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      .....+..+.|++++-++.+| |++||+.+.
T Consensus       160 eG~I~~i~W~g~lIAWand~G-v~vyd~~~~  189 (846)
T KOG2066|consen  160 EGPIHSIKWRGNLIAWANDDG-VKVYDTPTR  189 (846)
T ss_pred             ccceEEEEecCcEEEEecCCC-cEEEecccc
Confidence            445556667888888887665 899998764

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.80  E-value=4.8e-07  Score=55.65  Aligned_cols=110  Identities=13%  Similarity=0.102  Sum_probs=64.7

Q ss_pred             eEEEcCCCCEEEEEcC-CC----cEEEEEcCCC--CCcEEEe-eccCCeeEEEEccCCCEEEEee-CCCcEEEe--eCCC
Q 045566            3 CSTWKDDGTTVFSGGC-DK----QVKMWPLLSG--GQPVTVA-MHDAPIKEVAWIPEMNLLATGS-WDKTLKYW--DTRQ   71 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~-~~----~v~~~~~~~~--~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~-~~~~i~~w--~~~~   71 (112)
                      ..+|+|||+.|+..+. ++    .+..|++..+  .....+. ..........|+|+|+.++..+ .++...+|  ++..
T Consensus       235 ~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~  314 (428)
T PRK01029        235 MPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDP  314 (428)
T ss_pred             ceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcc
Confidence            4579999988876542 22    2344666542  2223332 2223446789999999776554 45654555  4432


Q ss_pred             -CCceEEe---cCCCeEEEEeeCCCEEEEEeCC---CcEEEEECcCCC
Q 045566           72 -PNPVHTQ---QLPDRCYALTVRYPLMVVGTAD---RNLVVFNLQNPQ  112 (112)
Q Consensus        72 -~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d---~~v~~~d~~~~~  112 (112)
                       +.....+   ........|+|+|+.++..+.+   ..|.+||+.+++
T Consensus       315 ~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~  362 (428)
T PRK01029        315 EGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR  362 (428)
T ss_pred             cccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence             1222222   1234567899999988776543   368899987653

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.80  E-value=4e-07  Score=56.33  Aligned_cols=107  Identities=17%  Similarity=0.090  Sum_probs=84.9

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |.++.++.+...|.+++.|..+-.|+.......+........+.+++.+||+..+++++  +.|++||.++.+.+..+.+
T Consensus       105 v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftg  182 (541)
T KOG4547|consen  105 VNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTG  182 (541)
T ss_pred             ceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecC
Confidence            45667777788899999999999999988888888888888899999999999887765  8999999999999988876


Q ss_pred             C---CeEEEEeeC-----CCEEEEE-eCCCcEEEEECc
Q 045566           81 P---DRCYALTVR-----YPLMVVG-TADRNLVVFNLQ  109 (112)
Q Consensus        81 ~---~~~~~~~~~-----~~~~~~~-~~d~~v~~~d~~  109 (112)
                      +   ++.+.|.-.     |.+++++ ..+..+.+|-++
T Consensus       183 h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~  220 (541)
T KOG4547|consen  183 HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE  220 (541)
T ss_pred             CCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence            4   466666554     5555554 445567777543

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.79  E-value=4.3e-07  Score=56.20  Aligned_cols=101  Identities=9%  Similarity=0.154  Sum_probs=84.9

Q ss_pred             CCEEEEEcCCCcEEEEEcCCCCCcEEEe--eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC---CCeE
Q 045566           10 GTTVFSGGCDKQVKMWPLLSGGQPVTVA--MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL---PDRC   84 (112)
Q Consensus        10 ~~~l~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~---~~~~   84 (112)
                      -..++-|...|.|.+|+...++....+.  .|.+.|.++.++.+-..+.+++.|..+..|++...+.++....   ....
T Consensus        70 t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~s  149 (541)
T KOG4547|consen   70 TSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSS  149 (541)
T ss_pred             ceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccce
Confidence            3467788889999999998888777664  6889999999999888999999999999999998887776654   3467


Q ss_pred             EEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           85 YALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        85 ~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      ++..|++..+++++  +.|.+||+++++
T Consensus       150 l~is~D~~~l~~as--~~ik~~~~~~ke  175 (541)
T KOG4547|consen  150 LCISPDGKILLTAS--RQIKVLDIETKE  175 (541)
T ss_pred             EEEcCCCCEEEecc--ceEEEEEccCce
Confidence            88999998888775  579999998864

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.78  E-value=8.9e-08  Score=56.25  Aligned_cols=110  Identities=13%  Similarity=0.196  Sum_probs=77.4

Q ss_pred             CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCcE------E----------EeeccCCeeEEEEccCCCEEEEeeCCCc
Q 045566            1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQPV------T----------VAMHDAPIKEVAWIPEMNLLATGSWDKT   63 (112)
Q Consensus         1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~~~------~----------~~~~~~~v~~~~~~~~~~~~~~~~~~~~   63 (112)
                      |++..|+| ..+.++..+..|.|++.|++.....-      .          +..--..|..+.|+.+|+++++-. =-+
T Consensus       216 ITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-ylt  294 (433)
T KOG1354|consen  216 ITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLT  294 (433)
T ss_pred             HhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cce
Confidence            45678999 56788888899999999998432211      1          111234678899999999998763 257


Q ss_pred             EEEeeCC-CCCceEEecCCC------------------eEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           64 LKYWDTR-QPNPVHTQQLPD------------------RCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        64 i~~w~~~-~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      +++||+. ..+++..+..+.                  -.++|+.++..+++|+.....+++++..+
T Consensus       295 vk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  295 VKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             eEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence            9999994 455555443221                  13566667779999999999999996554

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.77  E-value=2e-06  Score=53.28  Aligned_cols=108  Identities=14%  Similarity=0.086  Sum_probs=67.7

Q ss_pred             eEEEcCCCCEEEE-EcCCCc--EEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeC-CC--cEEEeeCCCCCceE
Q 045566            3 CSTWKDDGTTVFS-GGCDKQ--VKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW-DK--TLKYWDTRQPNPVH   76 (112)
Q Consensus         3 ~~~~~~~~~~l~~-~~~~~~--v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~--~i~~w~~~~~~~~~   76 (112)
                      ..+|+|+|+.|+. .+.++.  |.++|+.+++. ..+..+........|+|+++.++..+. ++  .+.++|+.+++...
T Consensus       266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~  344 (448)
T PRK04792        266 APRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR  344 (448)
T ss_pred             CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence            4689999998765 455554  67778765543 334444445677889999987765443 33  46666776665432


Q ss_pred             E-ecC-CCeEEEEeeCCCEEEEEeC-CC--cEEEEECcCC
Q 045566           77 T-QQL-PDRCYALTVRYPLMVVGTA-DR--NLVVFNLQNP  111 (112)
Q Consensus        77 ~-~~~-~~~~~~~~~~~~~~~~~~~-d~--~v~~~d~~~~  111 (112)
                      . ... ......|+|+++.++..+. ++  .|.++|+.++
T Consensus       345 Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g  384 (448)
T PRK04792        345 LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG  384 (448)
T ss_pred             EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            2 122 1234688999998877655 33  3555676654

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=98.76  E-value=4.5e-09  Score=67.47  Aligned_cols=65  Identities=23%  Similarity=0.426  Sum_probs=56.8

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCC
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR   70 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~   70 (112)
                      +.++.+.++..+++++.|..|++|-+..+.++..+.+|++.|++++|+|-.    +.+.||++++||.+
T Consensus       236 tdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  236 TDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR  300 (1113)
T ss_pred             chhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccc
Confidence            445666666788999999999999999999999999999999999999854    56789999999987

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=1.6e-07  Score=58.82  Aligned_cols=75  Identities=16%  Similarity=0.242  Sum_probs=65.7

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCee-EEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIK-EVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT   77 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~   77 (112)
                      .-+.|+|.-..+|.+..+|.+.+..+. .+.+.+++-+...++ +++|.|||+.++.|-.||+|++.|..++..+..
T Consensus        24 ~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   24 KRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             EEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            357899999999999999999999877 777888886666666 999999999999999999999999998876655

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.74  E-value=1.4e-06  Score=49.90  Aligned_cols=99  Identities=7%  Similarity=0.039  Sum_probs=67.2

Q ss_pred             EEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCc--eEEecCCC----eEEE
Q 045566           13 VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP--VHTQQLPD----RCYA   86 (112)
Q Consensus        13 l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~--~~~~~~~~----~~~~   86 (112)
                      +..++.|.++++.++.............-...++.++++++++++.+..+.|..|.+.....  ......+.    -...
T Consensus       131 ~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S  210 (344)
T KOG4532|consen  131 LNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNS  210 (344)
T ss_pred             eeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeee
Confidence            45566677777766543322222211112367889999999999999999999998865432  22222222    3456


Q ss_pred             EeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           87 LTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        87 ~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      |+.....++++..||.+.|||+|..
T Consensus       211 ~s~~~~~FAv~~Qdg~~~I~DVR~~  235 (344)
T KOG4532|consen  211 FSENDLQFAVVFQDGTCAIYDVRNM  235 (344)
T ss_pred             eccCcceEEEEecCCcEEEEEeccc
Confidence            7777889999999999999999864

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.74  E-value=7.1e-08  Score=58.74  Aligned_cols=111  Identities=18%  Similarity=0.249  Sum_probs=87.7

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEE-eeccCCeeEEEEcc--CCCEEEEeeCCCcEEEeeCCCC-----
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTV-AMHDAPIKEVAWIP--EMNLLATGSWDKTLKYWDTRQP-----   72 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~~~~~~~~~~i~~w~~~~~-----   72 (112)
                      |..+.|+..|..+++|+.|..|.+||-....+...+ .+|...|....|-|  +...+++++.||.+++=.+...     
T Consensus       145 VntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~  224 (559)
T KOG1334|consen  145 VNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVEN  224 (559)
T ss_pred             cceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceec
Confidence            456889999999999999999999998877776655 47888888888888  4567889999999998765432     


Q ss_pred             -CceEEecCCCeEEEEeeCC-CEEEEEeCCCcEEEEECcCC
Q 045566           73 -NPVHTQQLPDRCYALTVRY-PLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        73 -~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~  111 (112)
                       +.+..+..++..++..|.. .-+++++.|+.+.-+|++..
T Consensus       225 t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~  265 (559)
T KOG1334|consen  225 TKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQD  265 (559)
T ss_pred             ceecccccCccceeeecCCCCCcccccccccceeeeeeccC
Confidence             2334556677788888865 46888999999999998864

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.69  E-value=7.9e-08  Score=58.54  Aligned_cols=109  Identities=14%  Similarity=0.260  Sum_probs=78.8

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCC------------CcE-EEeeccC--CeeEEEE-ccCCCEEEEeeCCCcE
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG------------QPV-TVAMHDA--PIKEVAW-IPEMNLLATGSWDKTL   64 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~------------~~~-~~~~~~~--~v~~~~~-~~~~~~~~~~~~~~~i   64 (112)
                      |++++|+-++.-+.+.-.|-.++++....+.            ... .+++|..  .|..+.| .|...++++|+..|.|
T Consensus       339 ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhI  418 (559)
T KOG1334|consen  339 ITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHI  418 (559)
T ss_pred             ceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceE
Confidence            6899999776666666677788888543211            111 2566653  4667765 6788999999999999


Q ss_pred             EEeeCCCCCceEEecCCC---eEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           65 KYWDTRQPNPVHTQQLPD---RCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        65 ~~w~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                      .+|+-.+++.++...+..   +++--+|.-+.|++++-|..|+||-..
T Consensus       419 FiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~  466 (559)
T KOG1334|consen  419 FIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPL  466 (559)
T ss_pred             EEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCC
Confidence            999999888776665532   333345667899999999999999653

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.65  E-value=1.1e-05  Score=47.74  Aligned_cols=108  Identities=14%  Similarity=0.214  Sum_probs=76.8

Q ss_pred             eEEEcCCCCEEEEEcC-CCcEEEEEcCCCCCcE---EEeeccCC----------eeEEEEccCCCEEEEeeC-CCcEEEe
Q 045566            3 CSTWKDDGTTVFSGGC-DKQVKMWPLLSGGQPV---TVAMHDAP----------IKEVAWIPEMNLLATGSW-DKTLKYW   67 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~-~~~v~~~~~~~~~~~~---~~~~~~~~----------v~~~~~~~~~~~~~~~~~-~~~i~~w   67 (112)
                      .++.++++++++++.. .+.|.++.+.....+.   ....|.+.          ++...+.|+++++++.+. --.|.+|
T Consensus        93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y  172 (346)
T COG2706          93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY  172 (346)
T ss_pred             EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence            5788999999988864 4789999886533222   22234444          889999999998887764 3458899


Q ss_pred             eCCCCCceEE----e--cCCCeEEEEeeCCCEEEEEeC-CCcEEEEECcC
Q 045566           68 DTRQPNPVHT----Q--QLPDRCYALTVRYPLMVVGTA-DRNLVVFNLQN  110 (112)
Q Consensus        68 ~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~-d~~v~~~d~~~  110 (112)
                      ++..++....    .  ....+.+.|+|++++.++.+. +++|.+|+...
T Consensus       173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~  222 (346)
T COG2706         173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP  222 (346)
T ss_pred             EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC
Confidence            9885542211    1  123478999999998877665 88999998765

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.64  E-value=1.4e-05  Score=49.31  Aligned_cols=108  Identities=12%  Similarity=0.120  Sum_probs=68.2

Q ss_pred             eEEEcCCCCE-EEEEcC---CCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEE-eeC--CCcEEEeeCCCCCce
Q 045566            3 CSTWKDDGTT-VFSGGC---DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLAT-GSW--DKTLKYWDTRQPNPV   75 (112)
Q Consensus         3 ~~~~~~~~~~-l~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~--~~~i~~w~~~~~~~~   75 (112)
                      .-.|+|+|+. ++..+.   +..|.++|+.+++... +....+......|+|+|+.++. ...  +..|.++++.+++..
T Consensus       192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~-lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~  270 (419)
T PRK04043        192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK-IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT  270 (419)
T ss_pred             eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE-EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE
Confidence            5689999984 554332   3568888987665533 3234455567789999986653 333  356777888766533


Q ss_pred             EEecCC--CeEEEEeeCCCEEEEEeC-CC--cEEEEECcCC
Q 045566           76 HTQQLP--DRCYALTVRYPLMVVGTA-DR--NLVVFNLQNP  111 (112)
Q Consensus        76 ~~~~~~--~~~~~~~~~~~~~~~~~~-d~--~v~~~d~~~~  111 (112)
                      .....+  .....|+|+|+.++..+. .+  .|.+.|+.++
T Consensus       271 ~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g  311 (419)
T PRK04043        271 QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG  311 (419)
T ss_pred             EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            322222  345679999987766654 23  5777777654

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.61  E-value=7.8e-07  Score=52.47  Aligned_cols=107  Identities=15%  Similarity=0.202  Sum_probs=76.1

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEE---eec-----cCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTV---AMH-----DAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQ   71 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~~~-----~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~   71 (112)
                      |++++++.|+..+.++. |-.|.+|++.-......+   +.+     ..-|++..|+| ....++-.+..|.|++.|++.
T Consensus       167 iNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~  245 (433)
T KOG1354|consen  167 INSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQ  245 (433)
T ss_pred             eeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechh
Confidence            56888998888877654 688999998755543333   221     24578889999 667888889999999999985


Q ss_pred             CCceEEe----c---------------CCCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           72 PNPVHTQ----Q---------------LPDRCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        72 ~~~~~~~----~---------------~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                      ....-.+    .               ..+..+.|+++|+++++-.. -+|++||+.
T Consensus       246 ~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~n  301 (433)
T KOG1354|consen  246 SALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLN  301 (433)
T ss_pred             hhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEecc
Confidence            4321111    1               12356889999999886643 479999984

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.61  E-value=1.3e-05  Score=49.41  Aligned_cols=108  Identities=6%  Similarity=-0.012  Sum_probs=66.0

Q ss_pred             eEEEcCCCCEEEEE-cC--CCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEee-CCC--cEEEeeCCCCCceE
Q 045566            3 CSTWKDDGTTVFSG-GC--DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGS-WDK--TLKYWDTRQPNPVH   76 (112)
Q Consensus         3 ~~~~~~~~~~l~~~-~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~--~i~~w~~~~~~~~~   76 (112)
                      ...|+|||+.++.. +.  +..+.++++..++ ...+.........-.|+|+|+.++-.+ ..+  .|.+.|+.+++...
T Consensus       237 ~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r  315 (419)
T PRK04043        237 VSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ  315 (419)
T ss_pred             eeEECCCCCEEEEEEccCCCcEEEEEECCCCc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe
Confidence            46799999877543 33  3467777876554 333433333334567999998665544 333  57777887665533


Q ss_pred             EecCCCeEEEEeeCCCEEEEEeCC---------CcEEEEECcCC
Q 045566           77 TQQLPDRCYALTVRYPLMVVGTAD---------RNLVVFNLQNP  111 (112)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~d---------~~v~~~d~~~~  111 (112)
                      ..........|+|+|+.++.....         ..|.+.|+.++
T Consensus       316 lt~~g~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g  359 (419)
T PRK04043        316 VVFHGKNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD  359 (419)
T ss_pred             CccCCCcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC
Confidence            222222234899999987766543         25777777655

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.60  E-value=4.1e-06  Score=51.55  Aligned_cols=97  Identities=12%  Similarity=0.089  Sum_probs=73.5

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCC----CcEEEeeCCCCCceE
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWD----KTLKYWDTRQPNPVH   76 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~i~~w~~~~~~~~~   76 (112)
                      |.++..+|+|++++++.....+.+.|+.+++....=+...+-|+.+.|+|++++++-+--+    ..|+++|+.+.+...
T Consensus       404 I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~  483 (668)
T COG4946         404 IEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD  483 (668)
T ss_pred             eEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE
Confidence            4578899999999999999999999999887755445567789999999999999876444    458899998876543


Q ss_pred             Eec--CCCeEEEEeeCCCEEEEE
Q 045566           77 TQQ--LPDRCYALTVRYPLMVVG   97 (112)
Q Consensus        77 ~~~--~~~~~~~~~~~~~~~~~~   97 (112)
                      .-.  ...-+-+|+|++++|.--
T Consensus       484 vTT~ta~DfsPaFD~d~ryLYfL  506 (668)
T COG4946         484 VTTPTAYDFSPAFDPDGRYLYFL  506 (668)
T ss_pred             ecCCcccccCcccCCCCcEEEEE
Confidence            322  223456778888766543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.58  E-value=1.5e-05  Score=49.22  Aligned_cols=106  Identities=9%  Similarity=0.026  Sum_probs=79.6

Q ss_pred             EEcCCCCEEEEEcCCC-cEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe---cC
Q 045566            5 TWKDDGTTVFSGGCDK-QVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ---QL   80 (112)
Q Consensus         5 ~~~~~~~~l~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~---~~   80 (112)
                      .+.-+++.++.|..|| .+-++|..+++. ..+...-+.|.++..+++|+.++.+.....+.+.|+.++.....-   ..
T Consensus       366 r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~  444 (668)
T COG4946         366 RIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYG  444 (668)
T ss_pred             EEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccc
Confidence            3444556778888888 788999765543 445556678999999999999999999999999999988754332   23


Q ss_pred             CCeEEEEeeCCCEEEEEeCC----CcEEEEECcCC
Q 045566           81 PDRCYALTVRYPLMVVGTAD----RNLVVFNLQNP  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~d----~~v~~~d~~~~  111 (112)
                      -+..+.|+|++++++-+=.+    ..|+++|+..+
T Consensus       445 lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~  479 (668)
T COG4946         445 LITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG  479 (668)
T ss_pred             eeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence            45778899999988776444    45788888764

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.58  E-value=9.3e-06  Score=50.51  Aligned_cols=89  Identities=15%  Similarity=0.315  Sum_probs=63.6

Q ss_pred             cEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEE--eeCCCcEEEeeCCCCCceEEe-cCCCeEEEEeeCCCEEEEE
Q 045566           21 QVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLAT--GSWDKTLKYWDTRQPNPVHTQ-QLPDRCYALTVRYPLMVVG   97 (112)
Q Consensus        21 ~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~i~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   97 (112)
                      .+++.++........+ ...++|+++.|+|+++.|+.  |-.--.+.++|++-. ++..+ ..+.+.+-|+|.|++++.+
T Consensus       252 ~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v~df~egpRN~~~fnp~g~ii~lA  329 (566)
T KOG2315|consen  252 TLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-PVFDFPEGPRNTAFFNPHGNIILLA  329 (566)
T ss_pred             eEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-EeEeCCCCCccceEECCCCCEEEEe
Confidence            4666666522222222 35789999999999987654  445667889998654 44444 4567889999999999988


Q ss_pred             eCC---CcEEEEECcCC
Q 045566           98 TAD---RNLVVFNLQNP  111 (112)
Q Consensus        98 ~~d---~~v~~~d~~~~  111 (112)
                      +.+   |.+.+||+.+.
T Consensus       330 GFGNL~G~mEvwDv~n~  346 (566)
T KOG2315|consen  330 GFGNLPGDMEVWDVPNR  346 (566)
T ss_pred             ecCCCCCceEEEeccch
Confidence            774   78999998764

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.57  E-value=1.9e-05  Score=45.50  Aligned_cols=28  Identities=11%  Similarity=0.094  Sum_probs=25.4

Q ss_pred             eEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           83 RCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        83 ~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      -.+.++|++..|++...+|.|.+|++.+
T Consensus       233 ~kmSlSPdg~~La~ih~sG~lsLW~iPs  260 (282)
T PF15492_consen  233 FKMSLSPDGSLLACIHFSGSLSLWEIPS  260 (282)
T ss_pred             EEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence            4688999999999999999999999865

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.55  E-value=2.2e-05  Score=53.45  Aligned_cols=108  Identities=7%  Similarity=0.036  Sum_probs=73.1

Q ss_pred             eEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCcEEEee---------------ccCCeeEEEEccCCC-EEEEeeCCCcEE
Q 045566            3 CSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQPVTVAM---------------HDAPIKEVAWIPEMN-LLATGSWDKTLK   65 (112)
Q Consensus         3 ~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~---------------~~~~v~~~~~~~~~~-~~~~~~~~~~i~   65 (112)
                      .++++| ++..+++...++.|++||..++... .+.+               .-.....++++|++. .+++-..++.|+
T Consensus       687 gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Ir  765 (1057)
T PLN02919        687 DVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIR  765 (1057)
T ss_pred             EEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEE
Confidence            578998 5566677777889999997654321 1111               112345799999887 555666788999


Q ss_pred             EeeCCCCCceEEe------------------------cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           66 YWDTRQPNPVHTQ------------------------QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        66 ~w~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      +||+.++......                        ......+++++++..+++-..++.|++||..++
T Consensus       766 v~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg  835 (1057)
T PLN02919        766 ALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATK  835 (1057)
T ss_pred             EEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCC
Confidence            9998765422100                        001246788888988888888999999998754

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.55  E-value=5.8e-06  Score=51.02  Aligned_cols=106  Identities=10%  Similarity=0.131  Sum_probs=75.8

Q ss_pred             CeeEEEcCCCCEEEEEc--CCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCC---CcEEEeeCCCCCce
Q 045566            1 VLCSTWKDDGTTVFSGG--CDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWD---KTLKYWDTRQPNPV   75 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~i~~w~~~~~~~~   75 (112)
                      |..++|.|.++.+++.+  ....+.++|++.+   ..+...+..-..+.|+|.+++++.++.+   |.+.+||.......
T Consensus       277 Vhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N---l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~  353 (561)
T COG5354         277 VHDFTWEPLSSRFAVISGYMPASVSVFDLRGN---LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKV  353 (561)
T ss_pred             ceeeeecccCCceeEEecccccceeecccccc---eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEE
Confidence            56789999888776654  6778889998755   2233344455678899999988886654   67999998766544


Q ss_pred             E-EecCCC-eEEEEeeCCCEEEEEeC------CCcEEEEECc
Q 045566           76 H-TQQLPD-RCYALTVRYPLMVVGTA------DRNLVVFNLQ  109 (112)
Q Consensus        76 ~-~~~~~~-~~~~~~~~~~~~~~~~~------d~~v~~~d~~  109 (112)
                      . .+.+.. ....|+|+++++.+...      |..+.+||+-
T Consensus       354 ~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~  395 (561)
T COG5354         354 AGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY  395 (561)
T ss_pred             EEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence            3 555544 45569999998877633      7789999874

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.53  E-value=2.2e-07  Score=60.78  Aligned_cols=109  Identities=17%  Similarity=0.296  Sum_probs=81.6

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeC-CC-cEEEeeCCC-CCceEEe
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW-DK-TLKYWDTRQ-PNPVHTQ   78 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~-~i~~w~~~~-~~~~~~~   78 (112)
                      +|++|+-+.++|++|+..|.|++++..++........|.++++-+.-+.+|..+++.+. .. ...+|+... ..+.+.+
T Consensus      1105 Tc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf 1184 (1516)
T KOG1832|consen 1105 TCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSF 1184 (1516)
T ss_pred             eeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCccccc
Confidence            68999999999999999999999999999988888999999999998889988776654 33 477898865 3344444


Q ss_pred             cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           79 QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      . ...+..|+.....-+.|+.-....+||+.++
T Consensus      1185 ~-ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~ 1216 (1516)
T KOG1832|consen 1185 D-EDKAVKFSNSLQFRALGTEADDALLYDVQTC 1216 (1516)
T ss_pred             c-ccceeehhhhHHHHHhcccccceEEEecccC
Confidence            3 2344556554444444555556788888775

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=1.1e-06  Score=52.71  Aligned_cols=91  Identities=14%  Similarity=0.177  Sum_probs=68.5

Q ss_pred             EEEEEcCCCCCcEEEeeccCCeeEEEEccCCC-EEEEeeCCCcEEEeeCCCCCceEEecC--CCeEEEEeeCC-CEEEEE
Q 045566           22 VKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDTRQPNPVHTQQL--PDRCYALTVRY-PLMVVG   97 (112)
Q Consensus        22 v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~i~~w~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~   97 (112)
                      +++.+..+-+....++.+...|..++|+|... ++..++.+..|.+.|+++......+..  ...+.+|+.+. .+++.|
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaG  254 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAG  254 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEe
Confidence            44444444444555667788899999999555 677888999999999999877766654  34567776654 578888


Q ss_pred             eCCCcEEEEECcCCC
Q 045566           98 TADRNLVVFNLQNPQ  112 (112)
Q Consensus        98 ~~d~~v~~~d~~~~~  112 (112)
                      -.+|.|.+||+|.++
T Consensus       255 l~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  255 LQNGMVLVYDMRQPE  269 (463)
T ss_pred             ccCceEEEEEccCCC
Confidence            889999999999874

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.49  E-value=4.1e-05  Score=46.10  Aligned_cols=77  Identities=12%  Similarity=0.039  Sum_probs=59.9

Q ss_pred             EcCCCCEEEEEcC----------CCcEEEEEcCCCCCcEEEeeccC-------CeeEEEEccCCCEEEEee-C-CCcEEE
Q 045566            6 WKDDGTTVFSGGC----------DKQVKMWPLLSGGQPVTVAMHDA-------PIKEVAWIPEMNLLATGS-W-DKTLKY   66 (112)
Q Consensus         6 ~~~~~~~l~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~~~~~-~-~~~i~~   66 (112)
                      ++|+++.++++..          +..|.+||..+.+...++.....       .-..++++|+|++++... . +..+.+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            8999998877754          78899999999998877753221       234788999999888776 3 688999


Q ss_pred             eeCCCCCceEEecCCC
Q 045566           67 WDTRQPNPVHTQQLPD   82 (112)
Q Consensus        67 w~~~~~~~~~~~~~~~   82 (112)
                      .|+.+.+.+.....+.
T Consensus       133 vD~~~~kvv~ei~vp~  148 (352)
T TIGR02658       133 VDLEGKAFVRMMDVPD  148 (352)
T ss_pred             EECCCCcEEEEEeCCC
Confidence            9999998887765543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.48  E-value=2.7e-06  Score=50.18  Aligned_cols=79  Identities=18%  Similarity=0.268  Sum_probs=60.7

Q ss_pred             CcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCce-EEe---cCCCeEEEEeeCCCEEEEEeCCCcEEEEE
Q 045566           32 QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV-HTQ---QLPDRCYALTVRYPLMVVGTADRNLVVFN  107 (112)
Q Consensus        32 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~d~~v~~~d  107 (112)
                      ++.++.+|.+++.++.|.+....+++|..|..+.+||+...+-+ ...   ...+..+...+.-..+.+++.||.|.+||
T Consensus       189 ~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~  268 (404)
T KOG1409|consen  189 LITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWN  268 (404)
T ss_pred             eEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEe
Confidence            44566789999999999998899999999999999998655432 222   22334445555567899999999999999


Q ss_pred             CcC
Q 045566          108 LQN  110 (112)
Q Consensus       108 ~~~  110 (112)
                      ++.
T Consensus       269 mn~  271 (404)
T KOG1409|consen  269 MNV  271 (404)
T ss_pred             ccc
Confidence            864

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.47  E-value=6.5e-06  Score=51.46  Aligned_cols=104  Identities=13%  Similarity=0.154  Sum_probs=77.7

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEee-----------CCCcEEEeeCC
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGS-----------WDKTLKYWDTR   70 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~i~~w~~~   70 (112)
                      +-+.|||.|.+|++-..-| |.+|-...-..++.+. | ..|.-+.|+|..+++++-+           ....+.+||++
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~  290 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA  290 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence            3578999999999888755 7899876666666554 3 3578899999999988743           23569999999


Q ss_pred             CCCceEEecCC------CeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           71 QPNPVHTQQLP------DRCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        71 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                      ++...+.+...      -....|+.++.+++....+ .|.||+..
T Consensus       291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtp  334 (698)
T KOG2314|consen  291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETP  334 (698)
T ss_pred             ccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecC
Confidence            99876666441      2467888899998887764 57777654

>smart00320 WD40 WD40 repeats

Probab=98.47  E-value=1.1e-06  Score=34.74  Aligned_cols=36  Identities=39%  Similarity=0.607  Sum_probs=29.4

Q ss_pred             cEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEee
Q 045566           33 PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD   68 (112)
Q Consensus        33 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~   68 (112)
                      ...+..|...+.++.|.+.+..+++++.|+.+++|+
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            344556778889999998888889999999999885

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.46  E-value=5.8e-06  Score=53.60  Aligned_cols=108  Identities=14%  Similarity=0.198  Sum_probs=80.9

Q ss_pred             eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCC------------CEEEEeeCCCcEEEeeCC
Q 045566            3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEM------------NLLATGSWDKTLKYWDTR   70 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~~~~~~~~~~i~~w~~~   70 (112)
                      ++.|+|+| .++.|+. ..|.+-|..+.+.++.+..|+..|+.+.|.|..            ..++++...|.|.+||+.
T Consensus        20 A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~   97 (1062)
T KOG1912|consen   20 AADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFV   97 (1062)
T ss_pred             ccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEeh
Confidence            56788765 5666765 578899999899999999999999999998731            246777888999999998


Q ss_pred             CCCceEEecC---CCeEEEEeeC---C-CEEEEEeCCCcEEEEECcCCC
Q 045566           71 QPNPVHTQQL---PDRCYALTVR---Y-PLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        71 ~~~~~~~~~~---~~~~~~~~~~---~-~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      ....+..+..   +...++|-+.   . ..+++-.....+.+|+..+|+
T Consensus        98 ~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~  146 (1062)
T KOG1912|consen   98 LASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGE  146 (1062)
T ss_pred             hhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCc
Confidence            8766655543   3355666552   2 466777777889999988874

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.45  E-value=1.9e-05  Score=39.58  Aligned_cols=99  Identities=15%  Similarity=0.185  Sum_probs=63.6

Q ss_pred             CeeEEEcC-CC---CEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceE
Q 045566            1 VLCSTWKD-DG---TTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVH   76 (112)
Q Consensus         1 v~~~~~~~-~~---~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~   76 (112)
                      |+++++.+ ++   +.|++|+.|..|++|+-.  +.+.++. ..+.++++.-... ..|+.+..+|+|-+|+-..  .+.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eee
Confidence            46677665 32   589999999999999732  3333443 4566777766655 5688899999999997643  333


Q ss_pred             EecCC--CeEEE-EeeCC---CEEEEEeCCCcEEE
Q 045566           77 TQQLP--DRCYA-LTVRY---PLMVVGTADRNLVV  105 (112)
Q Consensus        77 ~~~~~--~~~~~-~~~~~---~~~~~~~~d~~v~~  105 (112)
                      ..+..  ..++. ++.++   +-|++|-.+|.|-+
T Consensus        76 RiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   76 RIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             eeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            33332  22222 33332   36888888888743

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.44  E-value=2.9e-06  Score=55.62  Aligned_cols=98  Identities=17%  Similarity=0.211  Sum_probs=75.4

Q ss_pred             CCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeC---------CCcEEEeeCCCCCceEEe
Q 045566            8 DDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW---------DKTLKYWDTRQPNPVHTQ   78 (112)
Q Consensus         8 ~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---------~~~i~~w~~~~~~~~~~~   78 (112)
                      .+++.+++|...|+|.+.|.++.+.+.++..|.+.+..+..  .|+.+++++.         |..+++||++.-+.+..+
T Consensus       185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI  262 (1118)
T KOG1275|consen  185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI  262 (1118)
T ss_pred             ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCc
Confidence            36789999999999999999999999999999999887555  6888888754         456789998854421110


Q ss_pred             cC-------------------------------------------------CCeEEEEeeCCCEEEEEeCCCcEEEEE
Q 045566           79 QL-------------------------------------------------PDRCYALTVRYPLMVVGTADRNLVVFN  107 (112)
Q Consensus        79 ~~-------------------------------------------------~~~~~~~~~~~~~~~~~~~d~~v~~~d  107 (112)
                      ..                                                 ....+.++++++.++.+..+|.|.+|-
T Consensus       263 ~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  263 QFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            00                                                 023567777888999999999999995

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.43  E-value=3.2e-06  Score=53.85  Aligned_cols=105  Identities=10%  Similarity=0.053  Sum_probs=77.2

Q ss_pred             EEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe--eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceE-----
Q 045566            4 STWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA--MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVH-----   76 (112)
Q Consensus         4 ~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~-----   76 (112)
                      -+++..+++++.|+.-|.+.+|+-. +...+.++  +....+.....+++..+++.|+..+.|.++.+....+..     
T Consensus        39 Tc~dst~~~l~~GsS~G~lyl~~R~-~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t  117 (726)
T KOG3621|consen   39 TCVDATEEYLAMGSSAGSVYLYNRH-TGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVT  117 (726)
T ss_pred             EEeecCCceEEEecccceEEEEecC-chhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeec
Confidence            3566678999999999999999844 44334333  244455666678888899999999999999876643221     


Q ss_pred             ----EecCCCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           77 ----TQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        77 ----~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                          .++..+++++|++++..+++|...|.|..-.+.
T Consensus       118 ~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~  154 (726)
T KOG3621|consen  118 PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELD  154 (726)
T ss_pred             cccccCCceEEEEEecccccEEeecCCCceEEEEEec
Confidence                122345789999999999999999998776544

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.41  E-value=1.9e-06  Score=55.52  Aligned_cols=110  Identities=13%  Similarity=0.263  Sum_probs=80.5

Q ss_pred             CeeEEEcCCC-CEEEEEcCCCcEEEEEcCCCCCcE-EEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCC-CceEE
Q 045566            1 VLCSTWKDDG-TTVFSGGCDKQVKMWPLLSGGQPV-TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP-NPVHT   77 (112)
Q Consensus         1 v~~~~~~~~~-~~l~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~-~~~~~   77 (112)
                      |+.+.|+|+. ..+++++-|..+..||++...... ...........++|+.....+.+.+..+.+++||.+.+ .++..
T Consensus       117 itd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s  196 (1081)
T KOG0309|consen  117 ITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCS  196 (1081)
T ss_pred             eeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEE
Confidence            4567788855 478999999999999998776543 44445566688999986666677778889999999865 45666


Q ss_pred             ecCCCeE---EEEee-CCCEEEEEeCCCcEEEEECcC
Q 045566           78 QQLPDRC---YALTV-RYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        78 ~~~~~~~---~~~~~-~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      .+.++..   +.|.. ....+.+++.|++|++||..+
T Consensus       197 ~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k  233 (1081)
T KOG0309|consen  197 LKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK  233 (1081)
T ss_pred             ecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence            6665432   33322 244688889999999998754

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.40  E-value=8.4e-05  Score=44.77  Aligned_cols=107  Identities=14%  Similarity=0.206  Sum_probs=72.5

Q ss_pred             eEEEcCCCCEEEEEc-CCCcEEEEEcCCCCCcEEE---ee-----------ccCCeeEEEEccCCCEEEEeeC-CCcEEE
Q 045566            3 CSTWKDDGTTVFSGG-CDKQVKMWPLLSGGQPVTV---AM-----------HDAPIKEVAWIPEMNLLATGSW-DKTLKY   66 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~-~~~~v~~~~~~~~~~~~~~---~~-----------~~~~v~~~~~~~~~~~~~~~~~-~~~i~~   66 (112)
                      .++++|++++++++. .++.+.++++.....+...   ..           .....+++.++|++++++.... ...|.+
T Consensus        91 ~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~  170 (345)
T PF10282_consen   91 HIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYV  170 (345)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred             EEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEE
Confidence            578899999998886 5889999999764433221   11           1245789999999998776643 556999


Q ss_pred             eeCCCCC-ce---EEecC----CCeEEEEeeCCCEEEEEeC-CCcEEEEECc
Q 045566           67 WDTRQPN-PV---HTQQL----PDRCYALTVRYPLMVVGTA-DRNLVVFNLQ  109 (112)
Q Consensus        67 w~~~~~~-~~---~~~~~----~~~~~~~~~~~~~~~~~~~-d~~v~~~d~~  109 (112)
                      |++.... .+   .....    .-+.+.|+|+++++++... ++.|.++++.
T Consensus       171 ~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~  222 (345)
T PF10282_consen  171 YDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYD  222 (345)
T ss_dssp             EEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence            9887654 12   12222    2268999999998877655 6678888876

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.38  E-value=6.4e-05  Score=42.61  Aligned_cols=102  Identities=14%  Similarity=0.149  Sum_probs=67.5

Q ss_pred             CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCC----------eeEEEEccCCCEEEEeeCCCc-EEEeeCCCCCceEE
Q 045566            9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAP----------IKEVAWIPEMNLLATGSWDKT-LKYWDTRQPNPVHT   77 (112)
Q Consensus         9 ~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~~~~~~~~~~-i~~w~~~~~~~~~~   77 (112)
                      .+..++.+..++.+..+|..+++.+.........          ...-....++ .+..+..++. +.+ |..+++.+..
T Consensus       121 ~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~  198 (238)
T PF13360_consen  121 DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWS  198 (238)
T ss_dssp             ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEE
T ss_pred             ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEE
Confidence            3667777887899999999999887766543321          1122222244 5556666665 555 9999886654


Q ss_pred             ecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           78 QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      .............+..+++++.++.+..||+++++
T Consensus       199 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  199 KPISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGK  233 (238)
T ss_dssp             ECSS-ECECEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred             ecCCCccCCceeeCCEEEEEeCCCEEEEEECCCCC
Confidence            44222222255677888888899999999999875

...

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=3.2e-06  Score=50.78  Aligned_cols=72  Identities=13%  Similarity=0.139  Sum_probs=59.4

Q ss_pred             CeeEEEcCCCC-EEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccC-CCEEEEeeCCCcEEEeeCCCCC
Q 045566            1 VLCSTWKDDGT-TVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPE-MNLLATGSWDKTLKYWDTRQPN   73 (112)
Q Consensus         1 v~~~~~~~~~~-~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~i~~w~~~~~~   73 (112)
                      |..++|+|..+ ++..++.+..+.+.|+++......+..+ ..+.+.+|.-+ ..++..|..+|.|.+||++...
T Consensus       196 IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  196 IRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             hhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence            45789999766 7888999999999999988887777766 78899999884 4566778889999999998654

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.33  E-value=0.00013  Score=43.93  Aligned_cols=109  Identities=9%  Similarity=0.095  Sum_probs=73.0

Q ss_pred             eeEEEcCCCCEEEEEcC----CCcEEEEEcCCC-CCcE---EEeeccCCeeEEEEccCCCEEEEee-CCCcEEEeeCCCC
Q 045566            2 LCSTWKDDGTTVFSGGC----DKQVKMWPLLSG-GQPV---TVAMHDAPIKEVAWIPEMNLLATGS-WDKTLKYWDTRQP   72 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~----~~~v~~~~~~~~-~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~i~~w~~~~~   72 (112)
                      ..++++|++++|.+..+    ++.|..|.+... ..+.   ...........++++|++++++.+. .++.+.++++...
T Consensus        40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~  119 (345)
T PF10282_consen   40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDD  119 (345)
T ss_dssp             CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCC
Confidence            35789999999988866    568998887754 2222   2332344557799999999888876 5899999999874


Q ss_pred             CceEE----ec-------------CCCeEEEEeeCCCEEEEEeC-CCcEEEEECcC
Q 045566           73 NPVHT----QQ-------------LPDRCYALTVRYPLMVVGTA-DRNLVVFNLQN  110 (112)
Q Consensus        73 ~~~~~----~~-------------~~~~~~~~~~~~~~~~~~~~-d~~v~~~d~~~  110 (112)
                      ..+..    ..             .+...+.++|+++++++... ...|.+|++..
T Consensus       120 g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~  175 (345)
T PF10282_consen  120 GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDD  175 (345)
T ss_dssp             SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-T
T ss_pred             cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence            32211    10             11246788999998888654 34688888765

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.33  E-value=1e-05  Score=53.22  Aligned_cols=101  Identities=16%  Similarity=0.131  Sum_probs=75.9

Q ss_pred             CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCC-eEEEE
Q 045566            9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD-RCYAL   87 (112)
Q Consensus         9 ~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~-~~~~~   87 (112)
                      ++..++.|+....+..+|+++.+..+......+.++  .+..+++.+.+|...|.|.+-|+++.+.++.+..+. ....|
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~--imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf  223 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVT--IMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF  223 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceE--EEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence            344566666666777888887776665544444433  344468899999999999999999999999998765 45678


Q ss_pred             eeCCCEEEEEeC---------CCcEEEEECcCC
Q 045566           88 TVRYPLMVVGTA---------DRNLVVFNLQNP  111 (112)
Q Consensus        88 ~~~~~~~~~~~~---------d~~v~~~d~~~~  111 (112)
                      +-.|+.|++++.         |.-|.+||+|+.
T Consensus       224 Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm  256 (1118)
T KOG1275|consen  224 DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMM  256 (1118)
T ss_pred             eccCCeEEEeecccccccccccchhhhhhhhhh
Confidence            889999999876         455789999875

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.33  E-value=2.3e-06  Score=53.67  Aligned_cols=101  Identities=19%  Similarity=0.411  Sum_probs=69.2

Q ss_pred             CCCEEEEEcCCCcEEEEEcCCCC-------CcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec--
Q 045566            9 DGTTVFSGGCDKQVKMWPLLSGG-------QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ--   79 (112)
Q Consensus         9 ~~~~l~~~~~~~~v~~~~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~--   79 (112)
                      +.+.+++++.|.+|++|.++...       +..++..|..+|+.+.|-.+-+.++++  |+-+.+||.--++.+....  
T Consensus       746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~da  823 (1034)
T KOG4190|consen  746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDA  823 (1034)
T ss_pred             cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcC
Confidence            45678899999999999986421       334667899999999998887777654  7889999986655443221  


Q ss_pred             ----CCCeEEEEee-CCCEEEEE-eCCCcEEEEECcCC
Q 045566           80 ----LPDRCYALTV-RYPLMVVG-TADRNLVVFNLQNP  111 (112)
Q Consensus        80 ----~~~~~~~~~~-~~~~~~~~-~~d~~v~~~d~~~~  111 (112)
                          ......++.. +...++.+ +...+|+++|.|..
T Consensus       824 pk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsc  861 (1034)
T KOG4190|consen  824 PKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSC  861 (1034)
T ss_pred             cccCCCceeEecccCcchheeeeccchhhheeeecccc
Confidence                1122334332 34444444 66888999998764

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.30  E-value=5.7e-06  Score=48.54  Aligned_cols=109  Identities=14%  Similarity=0.183  Sum_probs=75.2

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEE---eec-----cCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTV---AMH-----DAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQ   71 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~~~-----~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~   71 (112)
                      |.+++|+.+...++++ .|-.+.+|++........+   +.|     ..-|++..|+| ....++-.+..|.|++-|++.
T Consensus       175 iNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq  253 (460)
T COG5170         175 INSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQ  253 (460)
T ss_pred             eeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhh
Confidence            4678888877777655 4678999998765544332   222     23578889999 566788888999999999985


Q ss_pred             CCce------EEe-------------cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           72 PNPV------HTQ-------------QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        72 ~~~~------~~~-------------~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      ....      ...             ...+..+.|+++|+++++-.. -++.+||++.-
T Consensus       254 ~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~  311 (460)
T COG5170         254 SALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA  311 (460)
T ss_pred             hhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc
Confidence            4211      100             012356789999998886644 37999998753

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.29  E-value=0.00014  Score=44.23  Aligned_cols=102  Identities=18%  Similarity=0.209  Sum_probs=69.7

Q ss_pred             CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCCeEEE-E
Q 045566            9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYA-L   87 (112)
Q Consensus         9 ~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~-~   87 (112)
                      .+..+++++.++.+..+|..+++.+..............  .++..++.++.++.+..+|..+++.+........... .
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p  141 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPP  141 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCC
Confidence            456788888889999999988887765543222111221  2466777888899999999999888766654332211 0


Q ss_pred             eeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           88 TVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        88 ~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      ...+..++.++.++.++.+|.++++
T Consensus       142 ~v~~~~v~v~~~~g~l~a~d~~tG~  166 (377)
T TIGR03300       142 LVANGLVVVRTNDGRLTALDAATGE  166 (377)
T ss_pred             EEECCEEEEECCCCeEEEEEcCCCc
Confidence            1134567788889999999988764

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=1.6e-05  Score=50.26  Aligned_cols=71  Identities=20%  Similarity=0.259  Sum_probs=60.1

Q ss_pred             cCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC---CC-eEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           40 DAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL---PD-RCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        40 ~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      ...+..+.|+|.-..+|.+..+|.+.+..+. -+.+..+..   ++ ++++|.|+|+.+++|=.||+|++.|..++
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~   94 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG   94 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence            3567789999999999999999999988876 666666653   23 48999999999999999999999999876

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.25  E-value=3.2e-05  Score=43.85  Aligned_cols=102  Identities=17%  Similarity=0.197  Sum_probs=69.1

Q ss_pred             CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe-cCC--C---
Q 045566            9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ-QLP--D---   82 (112)
Q Consensus         9 ~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~-~~~--~---   82 (112)
                      ++..+++++.++.+..+|..+++....... ...+.... ...+..++.+..++.+..+|..+++.+... ...  .   
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~  112 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV  112 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeecccccccccc
Confidence            566677778899999999989988776653 22211111 123455566667889999999999988773 321  1   


Q ss_pred             -eEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           83 -RCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        83 -~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                       ........+..++.+..++.+..+|+++|+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~  143 (238)
T PF13360_consen  113 RSSSSPAVDGDRLYVGTSSGKLVALDPKTGK  143 (238)
T ss_dssp             B--SEEEEETTEEEEEETCSEEEEEETTTTE
T ss_pred             ccccCceEecCEEEEEeccCcEEEEecCCCc
Confidence             122333347888888889999999998874

...

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.24  E-value=3.7e-06  Score=55.14  Aligned_cols=103  Identities=15%  Similarity=0.176  Sum_probs=79.2

Q ss_pred             eEEEcCCCCEEEEEc----CCCcEEEEEcCCCCCcE--EEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC---
Q 045566            3 CSTWKDDGTTVFSGG----CDKQVKMWPLLSGGQPV--TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN---   73 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~----~~~~v~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~---   73 (112)
                      -.+|+|...++++++    ..|.|.||- .++++-.  +++.   .+++++|+|..-.++.|-.-|.+.+|.-.+.+   
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~---hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht   95 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPV---HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT   95 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccce---ehhhhccChHHHHHhhccccceeEEEecCCceeee
Confidence            357999999998875    357898885 4555433  3333   34679999988888888889999999765543   


Q ss_pred             ceEEecCCCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           74 PVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                      ...+++.++..+.|+++|..++++..-|.+.+|...
T Consensus        96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   96 VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            334566788899999999999999999999999653

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.23  E-value=1.3e-05  Score=51.95  Aligned_cols=109  Identities=17%  Similarity=0.344  Sum_probs=76.2

Q ss_pred             eEEEcCCC--CEEEEEcCCCcEEEEEcCCCCC---cEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCc-e
Q 045566            3 CSTWKDDG--TTVFSGGCDKQVKMWPLLSGGQ---PVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNP-V   75 (112)
Q Consensus         3 ~~~~~~~~--~~l~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~-~   75 (112)
                      .+.|+|..  .+-++......-.+|++.....   ...+.+|...++.+.|+| ....+++++.|..+..||++.... +
T Consensus        72 d~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~  151 (1081)
T KOG0309|consen   72 DVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPF  151 (1081)
T ss_pred             ceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcce
Confidence            45677743  3444444445566888754332   234568899999999999 556788999999999999987643 3


Q ss_pred             EEe---cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           76 HTQ---QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        76 ~~~---~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      ...   ......+.|+.....+++.+....+.+||++.+
T Consensus       152 ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~g  190 (1081)
T KOG0309|consen  152 YSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKG  190 (1081)
T ss_pred             eeeecccccCceeeecccCcchhhhccCCceEEEeccCC
Confidence            222   123355777776777777788888999999876

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.19  E-value=8e-06  Score=48.39  Aligned_cols=73  Identities=11%  Similarity=0.080  Sum_probs=55.3

Q ss_pred             CCCEEEEEcCCCcEEEEEcCCCCC---cEEEeeccCCeeEE--EEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCC
Q 045566            9 DGTTVFSGGCDKQVKMWPLLSGGQ---PVTVAMHDAPIKEV--AWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP   81 (112)
Q Consensus         9 ~~~~l~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~   81 (112)
                      ++.+|.+.+.+|.|++||.+.-+.   +.++.+|-..-.-+  .+.++...+++++.|...++|.++.+..+.+++.+
T Consensus       310 s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~  387 (425)
T KOG2695|consen  310 SQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP  387 (425)
T ss_pred             ccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence            567888888999999999986665   66677765433333  34456667888999999999999988877776654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.17  E-value=0.00013  Score=44.39  Aligned_cols=96  Identities=17%  Similarity=0.110  Sum_probs=61.1

Q ss_pred             CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccC-CeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCCeEEEE
Q 045566            9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDA-PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYAL   87 (112)
Q Consensus         9 ~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~   87 (112)
                      .+..++.++.++.+..+|..+++.+........ .......  .+..++.++.++.+.++|..+++.+.........+..
T Consensus       278 ~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~  355 (377)
T TIGR03300       278 DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIAS  355 (377)
T ss_pred             eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcccc
Confidence            355667777788888888777765544321111 1111111  3567888889999999999999888776543322222


Q ss_pred             ee--CCCEEEEEeCCCcEEEE
Q 045566           88 TV--RYPLMVVGTADRNLVVF  106 (112)
Q Consensus        88 ~~--~~~~~~~~~~d~~v~~~  106 (112)
                      +|  .+..++.++.||.|+.+
T Consensus       356 sp~~~~~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       356 PPVVVGDGLLVQTRDGDLYAF  376 (377)
T ss_pred             CCEEECCEEEEEeCCceEEEe
Confidence            22  34568889999998765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.15  E-value=0.00035  Score=41.68  Aligned_cols=106  Identities=10%  Similarity=0.134  Sum_probs=71.3

Q ss_pred             eeEEEcCCCCEEEEEcC-CCcEEEEEcCCCCCcE----EEeeccCCeeEEEEccCCCEEEEee-CCCcEEEeeCCCC-Cc
Q 045566            2 LCSTWKDDGTTVFSGGC-DKQVKMWPLLSGGQPV----TVAMHDAPIKEVAWIPEMNLLATGS-WDKTLKYWDTRQP-NP   74 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~-~~~v~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~i~~w~~~~~-~~   74 (112)
                      .+..++|++++++++.. --.+.+|++..+....    .+ .....-.-+.|+|++++....+ .+++|.+|..... ..
T Consensus       148 H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~  226 (346)
T COG2706         148 HSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGK  226 (346)
T ss_pred             ceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCce
Confidence            45678999999988853 2368899988665422    22 3445568899999999876655 4899999988764 22


Q ss_pred             e---EEe---cC------CCeEEEEeeCCCEEEEEeCC-CcEEEEEC
Q 045566           75 V---HTQ---QL------PDRCYALTVRYPLMVVGTAD-RNLVVFNL  108 (112)
Q Consensus        75 ~---~~~---~~------~~~~~~~~~~~~~~~~~~~d-~~v~~~d~  108 (112)
                      +   +.+   +.      ....+.++++|++|+++... ..|.+|.+
T Consensus       227 ~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V  273 (346)
T COG2706         227 FEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSV  273 (346)
T ss_pred             EEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEE
Confidence            2   221   11      23568889999999887552 24555544

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.15  E-value=0.00041  Score=44.69  Aligned_cols=90  Identities=16%  Similarity=0.079  Sum_probs=61.1

Q ss_pred             CcEEEEEcCC-----CCCcEEEeeccCCeeEEEEccCCCEEEEee-CCCcEEEeeCCCCCc------------eEEecC-
Q 045566           20 KQVKMWPLLS-----GGQPVTVAMHDAPIKEVAWIPEMNLLATGS-WDKTLKYWDTRQPNP------------VHTQQL-   80 (112)
Q Consensus        20 ~~v~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~i~~w~~~~~~~------------~~~~~~-   80 (112)
                      +.|.+.|..+     .+....++ -......+.++|||++++.++ .+..+.+.|+.+.+.            ...... 
T Consensus       296 n~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG  374 (635)
T PRK02888        296 SKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG  374 (635)
T ss_pred             CEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC
Confidence            5577888776     22333333 344558899999999876655 589999999977542            111111 


Q ss_pred             -CCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           81 -PDRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                       .-....|+.+|....+--.|..|..||+.+
T Consensus       375 lGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        375 LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence             123567788888777778899999999764

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.13  E-value=5.5e-05  Score=50.91  Aligned_cols=105  Identities=15%  Similarity=0.241  Sum_probs=69.7

Q ss_pred             eEEEcCCCCEEEEEcC---C---CcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeC---CCcEEEeeCCCCC
Q 045566            3 CSTWKDDGTTVFSGGC---D---KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW---DKTLKYWDTRQPN   73 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~---~---~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~i~~w~~~~~~   73 (112)
                      .++|-.||.++|+.+-   .   ..+++|+ +.+....+...-.+--.+++|.|.|+++++...   ...|.+|..+.. 
T Consensus       214 ~ISWRGDG~yFAVss~~~~~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGL-  291 (928)
T PF04762_consen  214 RISWRGDGEYFAVSSVEPETGSRRVIRVYS-REGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGL-  291 (928)
T ss_pred             EEEECCCCcEEEEEEEEcCCCceeEEEEEC-CCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCc-
Confidence            5789999999998764   2   4688998 445433332222333457899999999988754   345666664332 


Q ss_pred             ceEEe-------cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           74 PVHTQ-------QLPDRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        74 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      .-..+       ...+..+.|+.++..|+..-.|. |.+|-..+
T Consensus       292 rhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~N  334 (928)
T PF04762_consen  292 RHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSN  334 (928)
T ss_pred             EeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeC
Confidence            22222       12356789999999998877555 99996654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=98.09  E-value=2.1e-05  Score=33.45  Aligned_cols=27  Identities=26%  Similarity=0.438  Sum_probs=25.3

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEc
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPL   27 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~   27 (112)
                      |.+++|+|....+|.++.+|.|.++.+
T Consensus        14 v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   14 VSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             EEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            568999999999999999999999987

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=5.5e-05  Score=46.48  Aligned_cols=75  Identities=11%  Similarity=0.202  Sum_probs=58.6

Q ss_pred             eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCC-CC-----ceEE------------ecCCCeEEEEeeCCCEEEEEeC
Q 045566           38 MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ-PN-----PVHT------------QQLPDRCYALTVRYPLMVVGTA   99 (112)
Q Consensus        38 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~-~~-----~~~~------------~~~~~~~~~~~~~~~~~~~~~~   99 (112)
                      -|.++|.++.+.+-+..+++....|.|.-|.... -+     ....            .+....++.|+|++..+.+-+.
T Consensus       142 lH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~  221 (558)
T KOG0882|consen  142 LHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP  221 (558)
T ss_pred             cccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCc
Confidence            4678999999999888899999999999998763 11     1011            1122367899999999999999


Q ss_pred             CCcEEEEECcCCC
Q 045566          100 DRNLVVFNLQNPQ  112 (112)
Q Consensus       100 d~~v~~~d~~~~~  112 (112)
                      |..|+++++++++
T Consensus       222 DrkVR~F~~KtGk  234 (558)
T KOG0882|consen  222 DRKVRGFVFKTGK  234 (558)
T ss_pred             ccEEEEEEeccch
Confidence            9999999998874

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.05  E-value=6.7e-05  Score=50.38  Aligned_cols=94  Identities=15%  Similarity=0.191  Sum_probs=64.4

Q ss_pred             CCCEEEEEcCCCcEEEEEcCCCCCcE-EEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC---CCeE
Q 045566            9 DGTTVFSGGCDKQVKMWPLLSGGQPV-TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL---PDRC   84 (112)
Q Consensus         9 ~~~~l~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~---~~~~   84 (112)
                      .+..++.|+..|.+...|....-... .=..-..+|++++|+.+|..++.|-.+|.|.+||...++.++.+..   +...
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            34467888888999888865432211 1123467899999999999999999999999999999887766543   3332


Q ss_pred             EE---EeeCCCEEEEEeCCCc
Q 045566           85 YA---LTVRYPLMVVGTADRN  102 (112)
Q Consensus        85 ~~---~~~~~~~~~~~~~d~~  102 (112)
                      +-   +..++..++++...|.
T Consensus       178 vi~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCc
Confidence            22   2223445666665554

>smart00320 WD40 WD40 repeats

Probab=98.03  E-value=1.4e-05  Score=31.34  Aligned_cols=26  Identities=27%  Similarity=0.512  Sum_probs=23.3

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEE
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWP   26 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~   26 (112)
                      |.+++|++.++.+++++.|+.+++|+
T Consensus        15 i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       15 VTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             eeEEEECCCCCEEEEecCCCeEEEcC
Confidence            46889999889999999999999985

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.92  E-value=0.00046  Score=43.70  Aligned_cols=107  Identities=12%  Similarity=0.233  Sum_probs=69.9

Q ss_pred             CeeEEEcCCCCEEEEEcC---CCcEEEEEcCCC-C---CcEEEeeccCCeeEEEEccCCCEEEEee---CCCcEEEeeCC
Q 045566            1 VLCSTWKDDGTTVFSGGC---DKQVKMWPLLSG-G---QPVTVAMHDAPIKEVAWIPEMNLLATGS---WDKTLKYWDTR   70 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~---~~~v~~~~~~~~-~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~~~i~~w~~~   70 (112)
                      |...+|-|.|..+++-+.   ..++.+|.+++. .   .+.++..  ...+.+.|+|.|++++.+.   ..|.+.++|..
T Consensus       448 vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~  525 (698)
T KOG2314|consen  448 VIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD  525 (698)
T ss_pred             eeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence            456889999988766433   356888887732 2   2223332  4557899999999887654   46889999986


Q ss_pred             CC--CceEEe-cCCCeEEEEeeCCCEEEEEeCC------CcEEEEECc
Q 045566           71 QP--NPVHTQ-QLPDRCYALTVRYPLMVVGTAD------RNLVVFNLQ  109 (112)
Q Consensus        71 ~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~d------~~v~~~d~~  109 (112)
                      ..  +..... ....+.+-|+|.|+++.+++..      ..-++|+++
T Consensus       526 ~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq  573 (698)
T KOG2314|consen  526 YADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ  573 (698)
T ss_pred             hhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence            42  222111 1233567899999999998763      345566543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.88  E-value=0.00093  Score=41.84  Aligned_cols=106  Identities=12%  Similarity=0.168  Sum_probs=69.1

Q ss_pred             eEEEcCCCCEEEEEc------C-----CCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEe--eCCCcEEEeeC
Q 045566            3 CSTWKDDGTTVFSGG------C-----DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATG--SWDKTLKYWDT   69 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~------~-----~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~i~~w~~   69 (112)
                      .+.|.+.|.++.+--      .     ...+.++++......... .-.++|+...|.|.++.|++.  -..-.+.++|+
T Consensus       227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~l  305 (561)
T COG5354         227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDL  305 (561)
T ss_pred             EEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeeccc
Confidence            466778777654321      1     134667776533333332 457899999999987776544  46777889998


Q ss_pred             CCCCceEEecCCCeEEEEeeCCCEEEEEeCC---CcEEEEECc
Q 045566           70 RQPNPVHTQQLPDRCYALTVRYPLMVVGTAD---RNLVVFNLQ  109 (112)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~v~~~d~~  109 (112)
                      +..-...........+.|+|.+++++.++.|   |.+.+||..
T Consensus       306 r~Nl~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~  348 (561)
T COG5354         306 RGNLRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPA  348 (561)
T ss_pred             ccceEEecCCcccccccccCcccEEEEecCCccccceEEeccC
Confidence            8762222223445678888999888887765   567788754

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.87  E-value=0.0012  Score=38.33  Aligned_cols=100  Identities=14%  Similarity=0.069  Sum_probs=70.7

Q ss_pred             CCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCC--C-eEEE
Q 045566           10 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP--D-RCYA   86 (112)
Q Consensus        10 ~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~--~-~~~~   86 (112)
                      ..+++.|+..+.+.--|..+++...+-. -...+.+-+.- -+.+++.|+.++.+++.+++++..+..+...  + ....
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~  100 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ  100 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence            3567778888888888888777654321 11122221111 3778999999999999999999777665432  2 2345


Q ss_pred             EeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           87 LTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        87 ~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      .++++..+..++.|+..+..|.++.
T Consensus       101 ~d~~~glIycgshd~~~yalD~~~~  125 (354)
T KOG4649|consen  101 CDFDGGLIYCGSHDGNFYALDPKTY  125 (354)
T ss_pred             EcCCCceEEEecCCCcEEEeccccc
Confidence            6788999999999999999988763

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.87  E-value=0.00025  Score=41.98  Aligned_cols=72  Identities=17%  Similarity=0.315  Sum_probs=51.1

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCc-----EEEeec------------cCCeeEEEEcc--CCCEEEEeeCC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQP-----VTVAMH------------DAPIKEVAWIP--EMNLLATGSWD   61 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~-----~~~~~~------------~~~v~~~~~~~--~~~~~~~~~~~   61 (112)
                      |+++.|...|.++++|...|.|.+|.-......     ..++.|            ...|..+.|-.  .-.+++..+.|
T Consensus        29 ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNd  108 (460)
T COG5170          29 ITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTND  108 (460)
T ss_pred             eeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCC
Confidence            578889999999999999999999875432211     123333            23567788765  33578888899


Q ss_pred             CcEEEeeCCCC
Q 045566           62 KTLKYWDTRQP   72 (112)
Q Consensus        62 ~~i~~w~~~~~   72 (112)
                      ++|++|-+...
T Consensus       109 ktiKlWKiyek  119 (460)
T COG5170         109 KTIKLWKIYEK  119 (460)
T ss_pred             ceeeeeeeecc
Confidence            99999987543

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.86  E-value=0.00016  Score=30.78  Aligned_cols=30  Identities=23%  Similarity=0.510  Sum_probs=26.5

Q ss_pred             cCCeeEEEEccCCCEEEEeeCCCcEEEeeC
Q 045566           40 DAPIKEVAWIPEMNLLATGSWDKTLKYWDT   69 (112)
Q Consensus        40 ~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~   69 (112)
                      ...|.++.|+|...+++.+..+|.|.++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            356889999999999999999999999988

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.85  E-value=8.2e-05  Score=47.11  Aligned_cols=108  Identities=14%  Similarity=0.246  Sum_probs=70.5

Q ss_pred             eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe--eccCCeeEEEEcc--CCCEEEEe-eCCCcEEEeeCCCCCceEE
Q 045566            3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA--MHDAPIKEVAWIP--EMNLLATG-SWDKTLKYWDTRQPNPVHT   77 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~v~~~~~~~--~~~~~~~~-~~~~~i~~w~~~~~~~~~~   77 (112)
                      ++.|-.+.+.++  +.|+.+++||.-.+.++....  ...+.+.-+.--+  +...+..+ +...+++++|-+.......
T Consensus       789 ~igfL~~lr~i~--ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E  866 (1034)
T KOG4190|consen  789 DIGFLADLRSIA--SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCE  866 (1034)
T ss_pred             ceeeeeccceee--eccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceee
Confidence            344444445544  557889999987776654321  1222223233222  34444444 6678899999988765543


Q ss_pred             ec--------CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           78 QQ--------LPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        78 ~~--------~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      .+        ...++++..+.|+.++++-.+|.+.+.|.|+|+
T Consensus       867 ~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~  909 (1034)
T KOG4190|consen  867 LKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGK  909 (1034)
T ss_pred             EEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCc
Confidence            32        124688889999999999999999999999874

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.85  E-value=1.8e-05  Score=52.17  Aligned_cols=70  Identities=16%  Similarity=0.216  Sum_probs=60.1

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR   70 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~   70 (112)
                      ++++||+|..-.|+.|=..|.+.+|...+.+.-.....|..++..+.|+++|..++++..-|.+.+|...
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            3578999998899999889999999877665544455799999999999999999999999999999654

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.84  E-value=0.00017  Score=48.62  Aligned_cols=63  Identities=21%  Similarity=0.366  Sum_probs=50.7

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEE---ccCCCEEEEeeCCCc
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAW---IPEMNLLATGSWDKT   63 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~~~~~~~~   63 (112)
                      |++++|+.+|..++.|-.+|.|.+||+..++....+..+..+.+.+-+   ..++..+.++...|.
T Consensus       133 Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  133 VTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             ceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc
Confidence            679999999999999999999999999998988888766666555444   345556777777775

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.79  E-value=0.0017  Score=37.32  Aligned_cols=106  Identities=16%  Similarity=0.062  Sum_probs=67.6

Q ss_pred             eeEEEcCCCCEEEEEcCC--------CcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEE-EeeCCCcEEEeeCCCC
Q 045566            2 LCSTWKDDGTTVFSGGCD--------KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA-TGSWDKTLKYWDTRQP   72 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~--------~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~i~~w~~~~~   72 (112)
                      +.++++|+|++.++....        +.+..++..  .............+.++|+|+++.++ +-+..+.|..+++...
T Consensus        89 ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~  166 (246)
T PF08450_consen   89 NDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDAD  166 (246)
T ss_dssp             EEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT--SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETT
T ss_pred             ceEEEcCCCCEEEEecCCCccccccccceEEECCC--CeEEEEecCcccccceEECCcchheeecccccceeEEEecccc
Confidence            568899999977766543        446666654  33333333445668999999998665 5566788998888643


Q ss_pred             Cc-e------EEecCC---CeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           73 NP-V------HTQQLP---DRCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        73 ~~-~------~~~~~~---~~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                      .. +      ......   ...++++.+|++.++....+.|.++|.+
T Consensus       167 ~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~  213 (246)
T PF08450_consen  167 GGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD  213 (246)
T ss_dssp             TCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred             ccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence            32 1      112222   2468888889877777778889998865

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.78  E-value=0.0018  Score=37.63  Aligned_cols=72  Identities=15%  Similarity=0.073  Sum_probs=55.5

Q ss_pred             CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         9 ~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      -|.+++.|+.++.+.+.+.+++.....+...+.--..-...+++..+..++.|+..+..|.++..++...+-
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc  133 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC  133 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence            366788999999999999999988777653322222334567899999999999999999999887766543

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.77  E-value=0.0006  Score=44.72  Aligned_cols=90  Identities=19%  Similarity=0.084  Sum_probs=65.1

Q ss_pred             CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceE--EecCCCeEEE
Q 045566            9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVH--TQQLPDRCYA   86 (112)
Q Consensus         9 ~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~--~~~~~~~~~~   86 (112)
                      .+++++-|..+|.|++++.. +.+ .+...|...      .-+|.++++|+.||.+.+-.+-+.+...  .+..+..+++
T Consensus        48 ~~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksia  119 (846)
T KOG2066|consen   48 HDKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIA  119 (846)
T ss_pred             hcceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEE
Confidence            46789999999999999864 333 222223222      4479999999999999999887776554  4566778999


Q ss_pred             EeeC-----CCEEEEEeCCCcEEEEE
Q 045566           87 LTVR-----YPLMVVGTADRNLVVFN  107 (112)
Q Consensus        87 ~~~~-----~~~~~~~~~d~~v~~~d  107 (112)
                      ++|+     ..++++|+.-| +.++.
T Consensus       120 l~Pd~~~~~sk~fv~GG~ag-lvL~e  144 (846)
T KOG2066|consen  120 LHPDFSRQQSKQFVSGGMAG-LVLSE  144 (846)
T ss_pred             eccchhhhhhhheeecCcce-EEEeh
Confidence            9997     35677777766 66653

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.77  E-value=0.00023  Score=45.86  Aligned_cols=69  Identities=12%  Similarity=0.098  Sum_probs=55.0

Q ss_pred             eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcE-EE-----eeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCC
Q 045566            3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV-TV-----AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ   71 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~-~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~   71 (112)
                      ..+.+++..++|.|+..|.|.++-+....+.. .+     ..|...|++++|++++..+.+|...|.|.+-.+..
T Consensus        81 ~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen   81 VRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             EEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            45677888888999999999999876643322 11     23678899999999999999999999999887765

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.69  E-value=0.0021  Score=42.54  Aligned_cols=96  Identities=10%  Similarity=0.233  Sum_probs=69.9

Q ss_pred             EEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEcc---CC-CEEEEeeCCCcEEEeeCCCCCceEEecCCCe---E
Q 045566           12 TVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP---EM-NLLATGSWDKTLKYWDTRQPNPVHTQQLPDR---C   84 (112)
Q Consensus        12 ~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~---~   84 (112)
                      .++++...|.|-+||.........+..+..++..+.|-+   +. ..++.-....++.+|+..+++....+.....   +
T Consensus        81 liAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~  160 (1062)
T KOG1912|consen   81 LIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSC  160 (1062)
T ss_pred             eEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceee
Confidence            567788899999999988777777777888888888876   33 4566667788999999999998877765432   3


Q ss_pred             EEEee-CCCEEEEEeCCCcEEEEE
Q 045566           85 YALTV-RYPLMVVGTADRNLVVFN  107 (112)
Q Consensus        85 ~~~~~-~~~~~~~~~~d~~v~~~d  107 (112)
                      +.++| +.+++..-+..|.+.+-+
T Consensus       161 f~~DPfd~rh~~~l~s~g~vl~~~  184 (1062)
T KOG1912|consen  161 FRVDPFDSRHFCVLGSKGFVLSCK  184 (1062)
T ss_pred             eeeCCCCcceEEEEccCceEEEEe
Confidence            44455 445666666666665544

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.68  E-value=0.004  Score=38.51  Aligned_cols=108  Identities=15%  Similarity=0.206  Sum_probs=71.2

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCC-------------------------------------------cEEEe
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ-------------------------------------------PVTVA   37 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~-------------------------------------------~~~~~   37 (112)
                      |+.+.|+++..-|+++...|.|-+|....++.                                           ...+.
T Consensus         4 v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~   83 (395)
T PF08596_consen    4 VTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLD   83 (395)
T ss_dssp             EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE-
T ss_pred             EEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhee
Confidence            57889999988899999999998875421100                                           00112


Q ss_pred             eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC-----------CCeEEEEee-----CC---CEEEEEe
Q 045566           38 MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL-----------PDRCYALTV-----RY---PLMVVGT   98 (112)
Q Consensus        38 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~-----------~~~~~~~~~-----~~---~~~~~~~   98 (112)
                      ...++|++++.+. --+++.|..+|.+.+.|+|.+..+..-..           ..+.+.|..     ++   ..+++|.
T Consensus        84 ~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT  162 (395)
T PF08596_consen   84 AKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT  162 (395)
T ss_dssp             --S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred             ccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence            2467889998874 44889999999999999998876654211           113444442     22   3788899


Q ss_pred             CCCcEEEEECc
Q 045566           99 ADRNLVVFNLQ  109 (112)
Q Consensus        99 ~d~~v~~~d~~  109 (112)
                      ..|.+.+|.+.
T Consensus       163 n~G~v~~fkIl  173 (395)
T PF08596_consen  163 NSGNVLTFKIL  173 (395)
T ss_dssp             TTSEEEEEEEE
T ss_pred             CCCCEEEEEEe
Confidence            99999998764

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.65  E-value=7e-06  Score=52.14  Aligned_cols=105  Identities=15%  Similarity=0.284  Sum_probs=70.5

Q ss_pred             eeEEEcC-CCCEEEEEc----CCCcEEEEEcCCC--CCc--EEEe-eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCC
Q 045566            2 LCSTWKD-DGTTVFSGG----CDKQVKMWPLLSG--GQP--VTVA-MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ   71 (112)
Q Consensus         2 ~~~~~~~-~~~~l~~~~----~~~~v~~~~~~~~--~~~--~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~   71 (112)
                      ++++|++ |.+.||.|-    .|..+.+||+.+.  .+.  ..+. +......+++|..+.+++.+|...+.+.++|++.
T Consensus       106 t~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRq  185 (783)
T KOG1008|consen  106 TSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQ  185 (783)
T ss_pred             cccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhh
Confidence            5788888 667777773    3567999998765  221  1222 2344556888888889999999999999999984


Q ss_pred             CC-ceEEecC-CCeEEEEee-CCCEEEEEeCCCcEEEEE
Q 045566           72 PN-PVHTQQL-PDRCYALTV-RYPLMVVGTADRNLVVFN  107 (112)
Q Consensus        72 ~~-~~~~~~~-~~~~~~~~~-~~~~~~~~~~d~~v~~~d  107 (112)
                      .. ....+.. -+..+.+.| .+.+++. ..|+.+.+||
T Consensus       186 s~~~~~svnTk~vqG~tVdp~~~nY~cs-~~dg~iAiwD  223 (783)
T KOG1008|consen  186 SLDSVSSVNTKYVQGITVDPFSPNYFCS-NSDGDIAIWD  223 (783)
T ss_pred             hhhhhhhhhhhhcccceecCCCCCceec-cccCceeecc
Confidence            32 2222222 234556666 5555554 4599999999

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.64  E-value=0.0017  Score=44.61  Aligned_cols=107  Identities=12%  Similarity=0.214  Sum_probs=68.8

Q ss_pred             eEEEcCCCCEEEEE-----cCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEee---CCCcEEEeeCCCCCc
Q 045566            3 CSTWKDDGTTVFSG-----GCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGS---WDKTLKYWDTRQPNP   74 (112)
Q Consensus         3 ~~~~~~~~~~l~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~~~i~~w~~~~~~~   74 (112)
                      +++|--||.++++.     .....+++||-. +..-.+-......-.+++|-|.|..+++-.   .+..|.++..+..+.
T Consensus       200 ~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~h  278 (1265)
T KOG1920|consen  200 SISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRH  278 (1265)
T ss_pred             eEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccc
Confidence            58899999999883     333789999954 333222222333446899999999888753   345688887543221


Q ss_pred             e-----EEec-CCCeEEEEeeCCCEEEE---EeCCCcEEEEECcC
Q 045566           75 V-----HTQQ-LPDRCYALTVRYPLMVV---GTADRNLVVFNLQN  110 (112)
Q Consensus        75 ~-----~~~~-~~~~~~~~~~~~~~~~~---~~~d~~v~~~d~~~  110 (112)
                      -     .... .++..++|+.++..|++   ......|.+|-+.+
T Consensus       279 g~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  279 GEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             cccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence            1     1111 12677899999988887   44445599997654

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.64  E-value=0.0038  Score=38.44  Aligned_cols=96  Identities=8%  Similarity=0.036  Sum_probs=55.0

Q ss_pred             CEEEEEcCCCcEEEEEcCCCCCcEEEeeccCC-eeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCCeEEEEee
Q 045566           11 TTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAP-IKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTV   89 (112)
Q Consensus        11 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~   89 (112)
                      ..++.++.++.+...|..+++........... ......  .+..++.++.+|.+...|..+++.+...+.......-+|
T Consensus       295 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P  372 (394)
T PRK11138        295 GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEP  372 (394)
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCC
Confidence            34455555666666666555543322110000 111111  245667788899999999999887766644221111111


Q ss_pred             --CCCEEEEEeCCCcEEEEEC
Q 045566           90 --RYPLMVVGTADRNLVVFNL  108 (112)
Q Consensus        90 --~~~~~~~~~~d~~v~~~d~  108 (112)
                        .+..+++++.||.++.+++
T Consensus       373 ~~~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        373 VVADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             EEECCEEEEEeCCceEEEEeC
Confidence              3557899999999988764

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.61  E-value=0.00016  Score=47.14  Aligned_cols=108  Identities=8%  Similarity=0.096  Sum_probs=79.1

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEE--eeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCce-EEe
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTV--AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV-HTQ   78 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~-~~~   78 (112)
                      ..+.|+.+...|-+...+|.|.+|-+..+.-....  ....+-|.++.|..+|..++....||.|.+=.+...+.- ..+
T Consensus        75 ~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeL  154 (1189)
T KOG2041|consen   75 MVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKEL  154 (1189)
T ss_pred             EEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhc
Confidence            45789988899999999999999998766543322  234567889999999999999999999988766543321 111


Q ss_pred             cC-CCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           79 QL-PDRCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        79 ~~-~~~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                      +. ....+.|+++.+.++.+-.+|.+.++|..
T Consensus       155 kg~~l~hv~ws~D~~~~Lf~~ange~hlydnq  186 (1189)
T KOG2041|consen  155 KGQLLAHVLWSEDLEQALFKKANGETHLYDNQ  186 (1189)
T ss_pred             chheccceeecccHHHHHhhhcCCcEEEeccc
Confidence            11 12356778888888888888888888753

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.59  E-value=0.0056  Score=37.71  Aligned_cols=104  Identities=13%  Similarity=0.053  Sum_probs=66.3

Q ss_pred             CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccC-Ce-e-----EEEEcc--CCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566            9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDA-PI-K-----EVAWIP--EMNLLATGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         9 ~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~v-~-----~~~~~~--~~~~~~~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      .+..+++++.++.+.-+|..+++.+........ .. .     .+.-.|  .+..++.++.++.+..+|.++++.+....
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~  147 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTK  147 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence            456777788889999999988887765432110 00 0     000111  34566677788999999999998877665


Q ss_pred             CCCeEEE-EeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           80 LPDRCYA-LTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        80 ~~~~~~~-~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      ....... -...+..++.+..++.+..+|.++|+
T Consensus       148 ~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~  181 (394)
T PRK11138        148 VAGEALSRPVVSDGLVLVHTSNGMLQALNESDGA  181 (394)
T ss_pred             CCCceecCCEEECCEEEEECCCCEEEEEEccCCC
Confidence            4332111 00124567778888889999988775

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.58  E-value=0.0056  Score=39.82  Aligned_cols=102  Identities=12%  Similarity=0.035  Sum_probs=58.1

Q ss_pred             eeEEEcCCCCEEEEEc------CCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCC------------Cc
Q 045566            2 LCSTWKDDGTTVFSGG------CDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWD------------KT   63 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------~~   63 (112)
                      .+.+++|+|+.++...      .|..-.+|-...+.....+.. ....+.-.|+|+|..+.+....            +.
T Consensus       353 sspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gq  431 (591)
T PRK13616        353 TSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQ  431 (591)
T ss_pred             ccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec-CCCCCCceECCCCCceEEEecCcceEEEeccCCCce
Confidence            4678899999876654      244334443322322233321 2236778899997766555322            23


Q ss_pred             EEEeeCCCCCceEEecCCCeEEEEeeCCCEEEEEeCCCcEEE
Q 045566           64 LKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVV  105 (112)
Q Consensus        64 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~  105 (112)
                      +.+.++..+.....+...+..+.|+|+|..++... +++|.+
T Consensus       432 l~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~V  472 (591)
T PRK13616        432 LARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYL  472 (591)
T ss_pred             EEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence            33334433332223345678899999999877765 456655

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.58  E-value=0.0042  Score=36.18  Aligned_cols=108  Identities=16%  Similarity=0.107  Sum_probs=68.7

Q ss_pred             eEEEcCCCCEEEEEcCCC--cEEEEEcCCCCCcEEEeeccC-CeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566            3 CSTWKDDGTTVFSGGCDK--QVKMWPLLSGGQPVTVAMHDA-PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~--~v~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      .+.|..++.++-+.+.-|  .|+.+|+.+++......-... --..+... +...+...-.++...+||..+.+.+..+.
T Consensus        49 GL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~~  127 (264)
T PF05096_consen   49 GLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGTFP  127 (264)
T ss_dssp             EEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred             cEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEEEe
Confidence            355655677777776655  688899888876554431111 11122222 23344445568889999999988888887


Q ss_pred             CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           80 LPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      .+.....+..++..++.+.....++++|..+.
T Consensus       128 y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f  159 (264)
T PF05096_consen  128 YPGEGWGLTSDGKRLIMSDGSSRLYFLDPETF  159 (264)
T ss_dssp             -SSS--EEEECSSCEEEE-SSSEEEEE-TTT-
T ss_pred             cCCcceEEEcCCCEEEEECCccceEEECCccc
Confidence            77666666788889999988889999997764

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.57  E-value=0.0041  Score=35.75  Aligned_cols=95  Identities=14%  Similarity=0.091  Sum_probs=63.0

Q ss_pred             eeEEEcCCCCEEE-EEcCCCcEEEEEcCCCCC-c---EEE---eeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC
Q 045566            2 LCSTWKDDGTTVF-SGGCDKQVKMWPLLSGGQ-P---VTV---AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN   73 (112)
Q Consensus         2 ~~~~~~~~~~~l~-~~~~~~~v~~~~~~~~~~-~---~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~   73 (112)
                      +.++|+|+++.|+ +-+..+.|..+++..... +   ..+   .......-.+++.++|..+++....+.|.+++.+ ++
T Consensus       137 NGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~  215 (246)
T PF08450_consen  137 NGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GK  215 (246)
T ss_dssp             EEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SC
T ss_pred             cceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-cc
Confidence            4689999998775 557778899998864332 1   122   1111236689999999998888889999999987 66


Q ss_pred             ceEEecCC---CeEEEEe-eCCCEEEEE
Q 045566           74 PVHTQQLP---DRCYALT-VRYPLMVVG   97 (112)
Q Consensus        74 ~~~~~~~~---~~~~~~~-~~~~~~~~~   97 (112)
                      .+..+..+   .+.++|. ++...|++.
T Consensus       216 ~~~~i~~p~~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  216 LLREIELPVPRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             EEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred             EEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence            66655444   3566773 455555544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.56  E-value=0.0067  Score=38.11  Aligned_cols=55  Identities=15%  Similarity=0.190  Sum_probs=34.2

Q ss_pred             CCEEEEeeCCCcEEEeeCCCCCceEEecCC-CeEEEEeeCCCEEEEEeCCCcEEEEEC
Q 045566           52 MNLLATGSWDKTLKYWDTRQPNPVHTQQLP-DRCYALTVRYPLMVVGTADRNLVVFNL  108 (112)
Q Consensus        52 ~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~v~~~d~  108 (112)
                      |..+...+ ++.|.+||..+++.+..+..+ +..+.|++++++++..+.+ .+.+++.
T Consensus       117 G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~-~i~il~~  172 (443)
T PF04053_consen  117 GNLLGVKS-SDFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKD-SIYILKY  172 (443)
T ss_dssp             SSSEEEEE-TTEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred             CcEEEEEC-CCCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence            55554443 347888999888888888776 4788888888888888755 5767653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.52  E-value=0.0025  Score=42.39  Aligned_cols=102  Identities=17%  Similarity=0.188  Sum_probs=66.6

Q ss_pred             EEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCC-eeEEEEccCCCEEEEeeCCC-----cEEEeeCCCC-----
Q 045566            4 STWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAP-IKEVAWIPEMNLLATGSWDK-----TLKYWDTRQP-----   72 (112)
Q Consensus         4 ~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~-----~i~~w~~~~~-----   72 (112)
                      -+|++++..++.|+.+|.|.+.+ +.-+.+..+..++.. +..+....+..++++.+.|.     .+++|++...     
T Consensus        29 sc~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   29 SCCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             eEEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            36788899999999999998887 333444555555555 44443333445666665543     4899998532     


Q ss_pred             -Cce---EEec-------CCCeEEEEeeCCCEEEEEeCCCcEEEE
Q 045566           73 -NPV---HTQQ-------LPDRCYALTVRYPLMVVGTADRNLVVF  106 (112)
Q Consensus        73 -~~~---~~~~-------~~~~~~~~~~~~~~~~~~~~d~~v~~~  106 (112)
                       +++   +...       .+...++++.+-..+++|=.+|.|..+
T Consensus       108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~  152 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICY  152 (933)
T ss_pred             cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEE
Confidence             222   1111       234577788888888888888888766

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.50  E-value=0.00092  Score=44.43  Aligned_cols=63  Identities=11%  Similarity=0.160  Sum_probs=45.5

Q ss_pred             eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcE-EEeeccCCeeEEEEccCCCEEEEeeCCCcEEEee
Q 045566            3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV-TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD   68 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~   68 (112)
                      |++-+. ..+||+|+.+|.|++||- .+.... .+++-..+|..+..+.+|+++++.+.. .+.+++
T Consensus       582 ~~aTt~-~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlLi~  645 (794)
T PF08553_consen  582 CFATTE-DGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLLID  645 (794)
T ss_pred             EEEecC-CceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEEEE
Confidence            444443 347789999999999994 343333 456778999999999999998877655 444444

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.46  E-value=0.0066  Score=35.40  Aligned_cols=101  Identities=17%  Similarity=0.272  Sum_probs=60.5

Q ss_pred             cCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceE----------
Q 045566            7 KDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVH----------   76 (112)
Q Consensus         7 ~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~----------   76 (112)
                      ...++.|+.|+++| +.+++........... +...|..+...++-+.++.-. |+.+.++++..-....          
T Consensus         4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             ccCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence            34678899999888 8899883333333332 233489999998777666554 4999999986543222          


Q ss_pred             -----EecCCCeEEEEe----eCCCEEEEEeCCCcEEEEECcC
Q 045566           77 -----TQQLPDRCYALT----VRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        77 -----~~~~~~~~~~~~----~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                           .......+..|.    ..+...++.....++.+|....
T Consensus        81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~  123 (275)
T PF00780_consen   81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWND  123 (275)
T ss_pred             ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEEC
Confidence                 111111223333    2344445555566888877654

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.42  E-value=0.0021  Score=36.49  Aligned_cols=101  Identities=13%  Similarity=0.145  Sum_probs=59.0

Q ss_pred             CCEEEEEcCCCcEEEEEcCCCCCcE-EEeeccCCeeE-EEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec----CCCe
Q 045566           10 GTTVFSGGCDKQVKMWPLLSGGQPV-TVAMHDAPIKE-VAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ----LPDR   83 (112)
Q Consensus        10 ~~~l~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~----~~~~   83 (112)
                      +..+++|+.+|.|.+|......... ........+-+ +.-..++.+..+++.++.|+.|+..-.+.+....    .+..
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE  149 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence            4678889999999999865222211 11111222222 2222355678889999999999987666543221    2223


Q ss_pred             EEEEeeCCCEEEEE--eCCCcEEEEECcC
Q 045566           84 CYALTVRYPLMVVG--TADRNLVVFNLQN  110 (112)
Q Consensus        84 ~~~~~~~~~~~~~~--~~d~~v~~~d~~~  110 (112)
                      .......++.+...  +.|..++.|++..
T Consensus       150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eeEEecCCceEEeeccccchhhhhcchhh
Confidence            33344455556555  6677777777653

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.40  E-value=0.011  Score=37.06  Aligned_cols=105  Identities=10%  Similarity=0.085  Sum_probs=60.0

Q ss_pred             EEEcCCCCEEEEE-cCCCc--EEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEe-eCCCc--EEEeeCCCCCceE-
Q 045566            4 STWKDDGTTVFSG-GCDKQ--VKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATG-SWDKT--LKYWDTRQPNPVH-   76 (112)
Q Consensus         4 ~~~~~~~~~l~~~-~~~~~--v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~--i~~w~~~~~~~~~-   76 (112)
                      -+|+|+|++++.+ ..|+.  +.++|+......+ +....+.-..=.|+|+|+.++-. +..|.  |.+.+.......+ 
T Consensus       243 P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri  321 (425)
T COG0823         243 PAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL  321 (425)
T ss_pred             ccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe
Confidence            4799999887655 55665  5555666555332 33222222355688999877644 34555  5555665554322 


Q ss_pred             EecC-CCeEEEEeeCCCEEEEEeCC-Cc--EEEEECc
Q 045566           77 TQQL-PDRCYALTVRYPLMVVGTAD-RN--LVVFNLQ  109 (112)
Q Consensus        77 ~~~~-~~~~~~~~~~~~~~~~~~~d-~~--v~~~d~~  109 (112)
                      +... ....-.++|+|.+++..+.. |.  |.+.|+.
T Consensus       322 T~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~  358 (425)
T COG0823         322 TFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLA  358 (425)
T ss_pred             eccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccC
Confidence            2222 22356788999988777643 33  4455543

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.40  E-value=0.0038  Score=38.86  Aligned_cols=110  Identities=13%  Similarity=0.105  Sum_probs=76.6

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCC------CCC---------cEEEeeccCCeeEEEEccCCCEEEEeeCCCcEE
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLS------GGQ---------PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLK   65 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~------~~~---------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~   65 (112)
                      |.++.+.|.+..+.+....|.|..|....      .+.         +..+........++.|+|++..+.+-..|..|+
T Consensus       147 V~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR  226 (558)
T KOG0882|consen  147 VKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVR  226 (558)
T ss_pred             eEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEE
Confidence            35677788888888888889999998762      111         112233455678999999999999999999999


Q ss_pred             EeeCCCCCceEEecC------------------------------------CCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           66 YWDTRQPNPVHTQQL------------------------------------PDRCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        66 ~w~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                      ++++++++.++.+..                                    ......|+..+++++-++.-| |++.++.
T Consensus       227 ~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~  305 (558)
T KOG0882|consen  227 GFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLD  305 (558)
T ss_pred             EEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEee
Confidence            999988764332210                                    113567788888887776544 6666665


Q ss_pred             CC
Q 045566          110 NP  111 (112)
Q Consensus       110 ~~  111 (112)
                      ++
T Consensus       306 tn  307 (558)
T KOG0882|consen  306 TN  307 (558)
T ss_pred             cC
Confidence            54

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.39  E-value=0.0083  Score=35.11  Aligned_cols=40  Identities=18%  Similarity=0.270  Sum_probs=34.1

Q ss_pred             ccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566           39 HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ   78 (112)
Q Consensus        39 ~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~   78 (112)
                      ....|..+..+|+|..+++...+|.+.+|++.+.+.....
T Consensus       228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W  267 (282)
T PF15492_consen  228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW  267 (282)
T ss_pred             CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence            3567899999999999999999999999999876655443

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.38  E-value=0.022  Score=39.62  Aligned_cols=67  Identities=16%  Similarity=0.159  Sum_probs=50.0

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEee
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD   68 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~   68 (112)
                      |.++.|..+...++.+..+|.+.+-|..+... ...-.-..+|.+++|+|++..++..+..+++.+-+
T Consensus        71 i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT  137 (1265)
T KOG1920|consen   71 IVSVQFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPDEELLALITGRQTLLFMT  137 (1265)
T ss_pred             eEEEEEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe
Confidence            45677777888888888889998887654332 22223467899999999999998888877777653

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.37  E-value=0.012  Score=36.30  Aligned_cols=108  Identities=17%  Similarity=0.145  Sum_probs=74.9

Q ss_pred             eEEEcCCCCEEEEEcC---CCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEee-CCCcEEEeeCCCCCceE-E
Q 045566            3 CSTWKDDGTTVFSGGC---DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGS-WDKTLKYWDTRQPNPVH-T   77 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~i~~w~~~~~~~~~-~   77 (112)
                      .++++|+++.+.++..   ++.+.+.|..+.+.......-..+ ..+++.|++..+.... .++.+.+.|........ .
T Consensus       120 ~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~  198 (381)
T COG3391         120 GLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGS  198 (381)
T ss_pred             eEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccc
Confidence            5789999987776654   688889998888877775543344 8899999998665554 68889999976655443 1


Q ss_pred             ----e--cCCCeEEEEeeCCCEEEEEeCC---CcEEEEECcCC
Q 045566           78 ----Q--QLPDRCYALTVRYPLMVVGTAD---RNLVVFNLQNP  111 (112)
Q Consensus        78 ----~--~~~~~~~~~~~~~~~~~~~~~d---~~v~~~d~~~~  111 (112)
                          .  ........+.+++..+++....   +.+...|..++
T Consensus       199 ~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~  241 (381)
T COG3391         199 VGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATG  241 (381)
T ss_pred             cccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCc
Confidence                1  1122457788888876665544   47777776654

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.35  E-value=0.0096  Score=39.94  Aligned_cols=96  Identities=14%  Similarity=0.076  Sum_probs=64.2

Q ss_pred             CEEEEEcCCCcEEEEEcCCCC-CcEE--E--eeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC---ceEEecCCC
Q 045566           11 TTVFSGGCDKQVKMWPLLSGG-QPVT--V--AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN---PVHTQQLPD   82 (112)
Q Consensus        11 ~~l~~~~~~~~v~~~~~~~~~-~~~~--~--~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~---~~~~~~~~~   82 (112)
                      ...+.|-.+..+..||++-.. .+..  .  ......+.|++-..+| +++.|+.+|.|++||--..+   .+..+..++
T Consensus       543 e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI  621 (794)
T PF08553_consen  543 EQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPI  621 (794)
T ss_pred             CceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCe
Confidence            345667778889999988643 2221  1  1234567787777666 68899999999999943222   223344577


Q ss_pred             eEEEEeeCCCEEEEEeCCCcEEEEEC
Q 045566           83 RCYALTVRYPLMVVGTADRNLVVFNL  108 (112)
Q Consensus        83 ~~~~~~~~~~~~~~~~~d~~v~~~d~  108 (112)
                      ..+..+.+|+++++.+.. .+.+++.
T Consensus       622 ~~iDvt~DGkwilaTc~t-yLlLi~t  646 (794)
T PF08553_consen  622 IGIDVTADGKWILATCKT-YLLLIDT  646 (794)
T ss_pred             eEEEecCCCcEEEEeecc-eEEEEEE
Confidence            888899999988877654 4555553

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.32  E-value=0.015  Score=36.60  Aligned_cols=101  Identities=15%  Similarity=0.195  Sum_probs=54.3

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEe-eCCCCCceEEecC
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW-DTRQPNPVHTQQL   80 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w-~~~~~~~~~~~~~   80 (112)
                      ..++++|+|+++++++ +|.-.++.......  ...   +.-....|.+.+ .++.-..++.|.++ ++.+ .....+..
T Consensus        36 ~~ls~npngr~v~V~g-~geY~iyt~~~~r~--k~~---G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~-~~~k~i~~  107 (443)
T PF04053_consen   36 QSLSHNPNGRFVLVCG-DGEYEIYTALAWRN--KAF---GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKN-EVVKSIKL  107 (443)
T ss_dssp             SEEEE-TTSSEEEEEE-TTEEEEEETTTTEE--EEE---EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE--TT-----
T ss_pred             eeEEECCCCCEEEEEc-CCEEEEEEccCCcc--ccc---CceeEEEEecCc-cEEEEECCCeEEEEEcCcc-ccceEEcC
Confidence            4789999999998854 67777887322222  111   223567898854 46777778889996 4432 33233444


Q ss_pred             CCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           81 PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      +...-.+-. |..|...+.+ .|.+||+.+++
T Consensus       108 ~~~~~~If~-G~LL~~~~~~-~i~~yDw~~~~  137 (443)
T PF04053_consen  108 PFSVEKIFG-GNLLGVKSSD-FICFYDWETGK  137 (443)
T ss_dssp             SS-EEEEE--SSSEEEEETT-EEEEE-TTT--
T ss_pred             CcccceEEc-CcEEEEECCC-CEEEEEhhHcc
Confidence            433322222 7777776655 89999988753

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.31  E-value=0.012  Score=35.11  Aligned_cols=55  Identities=11%  Similarity=0.170  Sum_probs=41.9

Q ss_pred             EEEcCCCCEEEEE-----cCCCcEEEEEcC-CCCCcEEEeeccCCeeEEEEccCCCEEEEe
Q 045566            4 STWKDDGTTVFSG-----GCDKQVKMWPLL-SGGQPVTVAMHDAPIKEVAWIPEMNLLATG   58 (112)
Q Consensus         4 ~~~~~~~~~l~~~-----~~~~~v~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~   58 (112)
                      -.|+++|++|++.     ...|.|-+||.. ..+.+.++..+.-.-+.+.+.|+++.++.+
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVA  116 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVA  116 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEE
Confidence            4699999999886     335789999988 455566777676666888899999777665

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.26  E-value=7.8e-05  Score=47.68  Aligned_cols=109  Identities=19%  Similarity=0.274  Sum_probs=76.2

Q ss_pred             eeEEEcC--CCCEEEEEcCCCcEEEEEcCCCCC--cEEEeeccCCeeEEEEcc-CCCEEEEee----CCCcEEEeeCCCC
Q 045566            2 LCSTWKD--DGTTVFSGGCDKQVKMWPLLSGGQ--PVTVAMHDAPIKEVAWIP-EMNLLATGS----WDKTLKYWDTRQP   72 (112)
Q Consensus         2 ~~~~~~~--~~~~l~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~~~~~~----~~~~i~~w~~~~~   72 (112)
                      .|++++-  +...+++|..+|.|-+-..+...-  ....+++....++++|.+ |..++++|-    .+..+.+||..+.
T Consensus        60 kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~  139 (783)
T KOG1008|consen   60 KCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSL  139 (783)
T ss_pred             eeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccc
Confidence            3555544  335788999999999887764332  234567778889999998 777777763    3566899998765


Q ss_pred             C--ce--EEe----cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           73 N--PV--HTQ----QLPDRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        73 ~--~~--~~~----~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      -  +.  ..+    .....+++|..+.+.+++|...+.+.++|+|.
T Consensus       140 ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRq  185 (783)
T KOG1008|consen  140 LTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQ  185 (783)
T ss_pred             cCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhh
Confidence            2  11  111    11335677777888899999999999999883

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.24  E-value=0.015  Score=36.28  Aligned_cols=78  Identities=13%  Similarity=-0.012  Sum_probs=51.3

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeE-EEEccC-----------------CC-EEEEeeCCC
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKE-VAWIPE-----------------MN-LLATGSWDK   62 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~-----------------~~-~~~~~~~~~   62 (112)
                      .+++.+|.+++.++...-|.|.++|+.++..++..++.++.-.. +....+                 .. +++-....|
T Consensus       311 ~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprRg  390 (415)
T PF14655_consen  311 ESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRRG  390 (415)
T ss_pred             EEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccCC
Confidence            57889999999998888899999999887776665554433111 111000                 01 223455678


Q ss_pred             cEEEeeCCCCCceEEec
Q 045566           63 TLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus        63 ~i~~w~~~~~~~~~~~~   79 (112)
                      .+.+|+++++..+..+.
T Consensus       391 ~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  391 ILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             eEEEEecCCCCEEEEEE
Confidence            88888888887765553

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.16  E-value=0.03  Score=36.72  Aligned_cols=50  Identities=8%  Similarity=0.107  Sum_probs=34.2

Q ss_pred             CcEEEeeCCC-----CCceEEecCC--CeEEEEeeCCCEEEEEeC-CCcEEEEECcCC
Q 045566           62 KTLKYWDTRQ-----PNPVHTQQLP--DRCYALTVRYPLMVVGTA-DRNLVVFNLQNP  111 (112)
Q Consensus        62 ~~i~~w~~~~-----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-d~~v~~~d~~~~  111 (112)
                      +.|.+.|.++     .+.+..+..+  ...+.++|+|+++++++. +..+.+.|+.+.
T Consensus       296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~  353 (635)
T PRK02888        296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKL  353 (635)
T ss_pred             CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhh
Confidence            4577777766     2333333332  356788999998877665 788999998763

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.10  E-value=0.0058  Score=37.17  Aligned_cols=98  Identities=12%  Similarity=0.163  Sum_probs=60.1

Q ss_pred             cCCCCEEEEEc---------CCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE
Q 045566            7 KDDGTTVFSGG---------CDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT   77 (112)
Q Consensus         7 ~~~~~~l~~~~---------~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~   77 (112)
                      |||+++++...         ..+...++|+.+++.. .+......+....|+|+|+.++-.. ++.|.+.+..++...+.
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~-~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l   78 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEIT-PLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL   78 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEE-ESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceE-ECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence            57888777642         2456888998765432 2222256778899999999887764 57899988766533211


Q ss_pred             e-c-------------------CCCeEEEEeeCCCEEEEEeCC-CcEEEE
Q 045566           78 Q-Q-------------------LPDRCYALTVRYPLMVVGTAD-RNLVVF  106 (112)
Q Consensus        78 ~-~-------------------~~~~~~~~~~~~~~~~~~~~d-~~v~~~  106 (112)
                      - .                   .....+-|+|++++|+....| ..|..+
T Consensus        79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~  128 (353)
T PF00930_consen   79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEY  128 (353)
T ss_dssp             ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EE
T ss_pred             ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceE
Confidence            1 0                   112578899999988776554 334433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=97.10  E-value=0.021  Score=38.13  Aligned_cols=71  Identities=27%  Similarity=0.295  Sum_probs=48.5

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCC----------CCC---cEEE--------eeccCCeeEEEEccC---CCEEE
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLS----------GGQ---PVTV--------AMHDAPIKEVAWIPE---MNLLA   56 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~----------~~~---~~~~--------~~~~~~v~~~~~~~~---~~~~~   56 (112)
                      |..+..+|+|+.++..+..+.. |-.+..          ++.   .+++        ......|..+.|+|.   +.+++
T Consensus        87 v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~  165 (717)
T PF10168_consen   87 VHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV  165 (717)
T ss_pred             EEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence            4568899999999988886644 333321          111   1111        123457889999994   58999


Q ss_pred             EeeCCCcEEEeeCCCC
Q 045566           57 TGSWDKTLKYWDTRQP   72 (112)
Q Consensus        57 ~~~~~~~i~~w~~~~~   72 (112)
                      .-..|+.+++||+...
T Consensus       166 vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  166 VLTSDNTLRLYDISDP  181 (717)
T ss_pred             EEecCCEEEEEecCCC
Confidence            9999999999998643

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=96.92  E-value=0.034  Score=33.26  Aligned_cols=95  Identities=11%  Similarity=-0.033  Sum_probs=64.4

Q ss_pred             eEEEcC-CCCEEEEEcCCCc-EEEEEcCCCCCcEEEeeccCC--eeEEEEccCCCEEEEee-----CCCcEEEeeCC-CC
Q 045566            3 CSTWKD-DGTTVFSGGCDKQ-VKMWPLLSGGQPVTVAMHDAP--IKEVAWIPEMNLLATGS-----WDKTLKYWDTR-QP   72 (112)
Q Consensus         3 ~~~~~~-~~~~l~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~-----~~~~i~~w~~~-~~   72 (112)
                      .++.+| ....++.+-.-|. ..++|..+++....+....+.  .---.|+++|+++++.-     ..|.|-+||.. ..
T Consensus         9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~   88 (305)
T PF07433_consen    9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY   88 (305)
T ss_pred             ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence            577888 5566677766664 678999988887766432222  12356999999998863     35789999998 44


Q ss_pred             CceEEecCC---CeEEEEeeCCCEEEEE
Q 045566           73 NPVHTQQLP---DRCYALTVRYPLMVVG   97 (112)
Q Consensus        73 ~~~~~~~~~---~~~~~~~~~~~~~~~~   97 (112)
                      +.+..+...   -..+.+.|+++.|+++
T Consensus        89 ~ri~E~~s~GIGPHel~l~pDG~tLvVA  116 (305)
T PF07433_consen   89 RRIGEFPSHGIGPHELLLMPDGETLVVA  116 (305)
T ss_pred             EEEeEecCCCcChhhEEEcCCCCEEEEE
Confidence            555555432   2346678888777665

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=96.91  E-value=0.071  Score=36.85  Aligned_cols=67  Identities=12%  Similarity=0.113  Sum_probs=54.8

Q ss_pred             cCCeeEEEEccCCCEEEEeeCCCcEEEe----eCCCCC--ceEEecCCCeEEEEeeCCCEEEEEeCCCcEEEE
Q 045566           40 DAPIKEVAWIPEMNLLATGSWDKTLKYW----DTRQPN--PVHTQQLPDRCYALTVRYPLMVVGTADRNLVVF  106 (112)
Q Consensus        40 ~~~v~~~~~~~~~~~~~~~~~~~~i~~w----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~  106 (112)
                      ...|.++.+-++...++.+..+|.|.+.    +..+..  .+-.+...+.+++|+|+++.++..+.++++.+-
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~m  147 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLM  147 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEE
Confidence            4678999999999889999999999998    544432  445667788999999999999999999888764

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.89  E-value=0.0072  Score=25.13  Aligned_cols=31  Identities=26%  Similarity=0.351  Sum_probs=23.6

Q ss_pred             CCeeEEEEccC-C--CEEEEeeCCCcEEEeeCCC
Q 045566           41 APIKEVAWIPE-M--NLLATGSWDKTLKYWDTRQ   71 (112)
Q Consensus        41 ~~v~~~~~~~~-~--~~~~~~~~~~~i~~w~~~~   71 (112)
                      +.+.++.|+|+ +  .+++-.-..+.+.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            35778889873 3  4777777788899998885

It contains a characteristic DLL sequence motif.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.88  E-value=0.051  Score=34.72  Aligned_cols=102  Identities=12%  Similarity=0.116  Sum_probs=62.6

Q ss_pred             CCEEEEEcCCCcEEEEEcCCCCCcEEEeeccC------Cee--EEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCC
Q 045566           10 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDA------PIK--EVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP   81 (112)
Q Consensus        10 ~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~------~v~--~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~   81 (112)
                      +..++.++.++.+.-.|..+++.+........      .+.  .+... ++..++.++.++.+.-+|.++++.+..+...
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~  139 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN  139 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence            45567778889999999988887766543221      000  01111 2256777888999999999999988776543


Q ss_pred             CeE-----EEEee--CCCEEEEEe---------CCCcEEEEECcCCC
Q 045566           82 DRC-----YALTV--RYPLMVVGT---------ADRNLVVFNLQNPQ  112 (112)
Q Consensus        82 ~~~-----~~~~~--~~~~~~~~~---------~d~~v~~~d~~~~~  112 (112)
                      ...     +.-.|  .+..++.++         .++.+..+|..+++
T Consensus       140 ~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~  186 (488)
T cd00216         140 DQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGK  186 (488)
T ss_pred             CCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCc
Confidence            210     11111  224455554         35678888887764

The alignment model contains an 8-bladed beta-propeller.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.75  E-value=0.023  Score=28.80  Aligned_cols=64  Identities=16%  Similarity=0.143  Sum_probs=40.9

Q ss_pred             eeEEEEcc---CC-CEEEEeeCCCcEEEeeCCCCCceEEecCCCeEEEEee-CCCEEEEEeCCCcEEEEEC
Q 045566           43 IKEVAWIP---EM-NLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTV-RYPLMVVGTADRNLVVFNL  108 (112)
Q Consensus        43 v~~~~~~~---~~-~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~v~~~d~  108 (112)
                      |+++++..   +| ..++.|+.|..|++|+-  ...+...........+.+ .+..++-+-.+|+|-+|+-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDR   70 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence            44555543   32 57889999999999874  345555555444333332 3456777888888877764

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.73  E-value=0.052  Score=32.65  Aligned_cols=97  Identities=15%  Similarity=0.215  Sum_probs=59.8

Q ss_pred             eeEEEcCCCCEEEEEc-CCCcEEEEEcCC--C---CCc--EEEeeccCCeeEEEEccCCCEEEEeeCCC-cEEEeeCCCC
Q 045566            2 LCSTWKDDGTTVFSGG-CDKQVKMWPLLS--G---GQP--VTVAMHDAPIKEVAWIPEMNLLATGSWDK-TLKYWDTRQP   72 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~-~~~~v~~~~~~~--~---~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~i~~w~~~~~   72 (112)
                      +.++|||+++.+..+. ..+.+.-+++..  +   ...  ..+....+..=.++...+|.+.+++..++ .|..|+.. +
T Consensus       166 NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G  244 (307)
T COG3386         166 NGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G  244 (307)
T ss_pred             CceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C
Confidence            4689999998887764 457777777642  1   111  11122234445567777888886555554 79999987 7


Q ss_pred             CceEEecCC---CeEEEEe-eCCCEEEEEeC
Q 045566           73 NPVHTQQLP---DRCYALT-VRYPLMVVGTA   99 (112)
Q Consensus        73 ~~~~~~~~~---~~~~~~~-~~~~~~~~~~~   99 (112)
                      +.+..+..+   ...++|- ++.+.|++.+.
T Consensus       245 ~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         245 KLLGEIKLPVKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             cEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence            777776665   3455663 34455554443

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.72  E-value=0.05  Score=32.39  Aligned_cols=108  Identities=13%  Similarity=0.099  Sum_probs=70.8

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeec-cCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE--
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMH-DAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT--   77 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~--   77 (112)
                      ++++.|+|+.+.|++..+...-.++-..+++.+.+++-. -.....+.+..++++.++--.++.+.++.+........  
T Consensus        88 vS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~  167 (316)
T COG3204          88 VSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAK  167 (316)
T ss_pred             ccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEecc
Confidence            568999999999888887777777766778877766421 22334667776777776666788888887755432211  


Q ss_pred             ---ec--------CCCeEEEEeeCCCEEEEEeCCCcEEEEEC
Q 045566           78 ---QQ--------LPDRCYALTVRYPLMVVGTADRNLVVFNL  108 (112)
Q Consensus        78 ---~~--------~~~~~~~~~~~~~~~~~~~~d~~v~~~d~  108 (112)
                         +.        ..-..+++++....++..=.-.-+.||.+
T Consensus       168 ~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~  209 (316)
T COG3204         168 VQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEV  209 (316)
T ss_pred             ceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEE
Confidence               11        11246788888777777766555665543

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.65  E-value=0.071  Score=33.17  Aligned_cols=106  Identities=8%  Similarity=0.097  Sum_probs=61.7

Q ss_pred             eEEEcCCCCEEEEE-cCC----CcEEEEEcCCCCCcEEE-eeccCCeeEEEEccCCCEEEEeeCCC-----------cEE
Q 045566            3 CSTWKDDGTTVFSG-GCD----KQVKMWPLLSGGQPVTV-AMHDAPIKEVAWIPEMNLLATGSWDK-----------TLK   65 (112)
Q Consensus         3 ~~~~~~~~~~l~~~-~~~----~~v~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~-----------~i~   65 (112)
                      ..+++|++++++.+ +..    ..++++|+.+++.+... ...  ....+.|.+++..++....+.           .|.
T Consensus       128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~  205 (414)
T PF02897_consen  128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY  205 (414)
T ss_dssp             EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred             eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence            56899999988765 332    45999999988655422 221  112399999987765543322           367


Q ss_pred             EeeCCCCCce--EEecC--CC---eEEEEeeCCCEEEEEeCC----CcEEEEECcC
Q 045566           66 YWDTRQPNPV--HTQQL--PD---RCYALTVRYPLMVVGTAD----RNLVVFNLQN  110 (112)
Q Consensus        66 ~w~~~~~~~~--~~~~~--~~---~~~~~~~~~~~~~~~~~d----~~v~~~d~~~  110 (112)
                      .|.+.+...-  ..+..  ..   ..+..+.++++++.....    ..+.+.|+..
T Consensus       206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~  261 (414)
T PF02897_consen  206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD  261 (414)
T ss_dssp             EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred             EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence            7777665432  22322  11   245567788877654332    3466667654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.60  E-value=0.07  Score=32.50  Aligned_cols=107  Identities=13%  Similarity=0.125  Sum_probs=68.1

Q ss_pred             eEEEcCCCCEEEEEc----------CCCcEEEEEcCCCCCcEEEe--ec-cC----CeeEEEEccCCCEEEEeeC--CCc
Q 045566            3 CSTWKDDGTTVFSGG----------CDKQVKMWPLLSGGQPVTVA--MH-DA----PIKEVAWIPEMNLLATGSW--DKT   63 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~----------~~~~v~~~~~~~~~~~~~~~--~~-~~----~v~~~~~~~~~~~~~~~~~--~~~   63 (112)
                      .+..+|+++.++++.          ..-.|.+||..+..+..++.  .. ..    ....++++.++++++....  ...
T Consensus        40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S  119 (342)
T PF06433_consen   40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS  119 (342)
T ss_dssp             EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred             ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence            456789999887653          23468999998877665442  21 11    1234567777877765544  345


Q ss_pred             EEEeeCCCCCceEEecCCCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           64 LKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        64 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                      |.+-|+...+.+..+..+.-...+-...+.+.+-|.||++.-..+.
T Consensus       120 VtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld  165 (342)
T PF06433_consen  120 VTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLD  165 (342)
T ss_dssp             EEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEET
T ss_pred             EEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEEC
Confidence            7788888877777776665555554444568888889888766654

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.60  E-value=0.089  Score=33.68  Aligned_cols=102  Identities=18%  Similarity=0.193  Sum_probs=61.8

Q ss_pred             CEEEEEcCCCcEEEEEcCCCCCcEEEeeccCC--eeEEEEcc--CCCEEEEee---------CCCcEEEeeCCCCCceEE
Q 045566           11 TTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAP--IKEVAWIP--EMNLLATGS---------WDKTLKYWDTRQPNPVHT   77 (112)
Q Consensus        11 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--v~~~~~~~--~~~~~~~~~---------~~~~i~~w~~~~~~~~~~   77 (112)
                      ..++.++.++.|.-+|.++++.+.........  -..+.-+|  .+..++.++         .++.+...|..+++.+..
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~  190 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR  190 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence            57777888999999999999887665432210  00111122  123344443         357788889988887765


Q ss_pred             ecCCC------------------------eEEEEeeCCCEEEEEeCCC------------------cEEEEECcCCC
Q 045566           78 QQLPD------------------------RCYALTVRYPLMVVGTADR------------------NLVVFNLQNPQ  112 (112)
Q Consensus        78 ~~~~~------------------------~~~~~~~~~~~~~~~~~d~------------------~v~~~d~~~~~  112 (112)
                      .....                        ....+++.+..++.++.++                  .+.-+|.++++
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~  267 (488)
T cd00216         191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK  267 (488)
T ss_pred             eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence            53310                        1233444556777777665                  68888887764

The alignment model contains an 8-bladed beta-propeller.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.53  E-value=0.064  Score=31.27  Aligned_cols=108  Identities=8%  Similarity=0.090  Sum_probs=67.6

Q ss_pred             CeeEEEcCCCC-EEEEEcCCCcEEEEEcCCCCCcEEEeec-cCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC-c---
Q 045566            1 VLCSTWKDDGT-TVFSGGCDKQVKMWPLLSGGQPVTVAMH-DAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN-P---   74 (112)
Q Consensus         1 v~~~~~~~~~~-~l~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~-~---   74 (112)
                      ++.++|+|+.. ++++....+.|..++. +++.+..++-. -+....+++..++.++++.-.++.+.++++.... .   
T Consensus        24 ~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~  102 (248)
T PF06977_consen   24 LSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDR  102 (248)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--E
T ss_pred             ccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccch
Confidence            46799999654 6677778888888885 46666665432 3557888888778777766668889888874321 1   


Q ss_pred             --eEEec--C------CCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           75 --VHTQQ--L------PDRCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        75 --~~~~~--~------~~~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                        ...+.  .      ....+++++.+..++++-...-..++.++
T Consensus       103 ~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~  147 (248)
T PF06977_consen  103 ADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVN  147 (248)
T ss_dssp             EEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred             hhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEc
Confidence              11121  1      23689999988877777666556666544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.48  E-value=0.1  Score=32.92  Aligned_cols=102  Identities=16%  Similarity=0.160  Sum_probs=60.2

Q ss_pred             EEEcCCCCEEEEE---cCC-CcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEE-EeeCCCc--EEEeeCCCCCceE
Q 045566            4 STWKDDGTTVFSG---GCD-KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA-TGSWDKT--LKYWDTRQPNPVH   76 (112)
Q Consensus         4 ~~~~~~~~~l~~~---~~~-~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~--i~~w~~~~~~~~~   76 (112)
                      -+|+|++..++.-   ... ..+.++++.+++...... ....-..-+|+|+|+.++ +...|+.  |.+.|+......+
T Consensus       198 p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~  276 (425)
T COG0823         198 PAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR  276 (425)
T ss_pred             cccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee
Confidence            3577877765443   222 458888888777655443 223334567999988765 4445555  6666776665333


Q ss_pred             E--ecCCCeEEEEeeCCCEEEEEeC-CCcEEEE
Q 045566           77 T--QQLPDRCYALTVRYPLMVVGTA-DRNLVVF  106 (112)
Q Consensus        77 ~--~~~~~~~~~~~~~~~~~~~~~~-d~~v~~~  106 (112)
                      .  .......-.|+|+|+.++-.+. .|.-.+|
T Consensus       277 Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~  309 (425)
T COG0823         277 LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIY  309 (425)
T ss_pred             cccCCccccCccCCCCCCEEEEEeCCCCCcceE
Confidence            1  1222346678899987765544 4443333

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.47  E-value=0.014  Score=37.24  Aligned_cols=58  Identities=12%  Similarity=0.165  Sum_probs=43.8

Q ss_pred             CCCEEEEEcCCCcEEEEEcCCCCCc-EEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEee
Q 045566            9 DGTTVFSGGCDKQVKMWPLLSGGQP-VTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD   68 (112)
Q Consensus         9 ~~~~l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~   68 (112)
                      ...++++|+.+|-|++||- .+... ..+++-..+|..+..+.+|++++..+... +.+.+
T Consensus       440 ~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~ty-LlLi~  498 (644)
T KOG2395|consen  440 ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTY-LLLID  498 (644)
T ss_pred             CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccE-EEEEE
Confidence            3457899999999999995 44433 35678889999999999999987766554 44444

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=96.46  E-value=0.0076  Score=40.94  Aligned_cols=78  Identities=12%  Similarity=0.082  Sum_probs=53.7

Q ss_pred             CcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCC---eEEEEeeCCCEEEEEeCCCc--EEEE
Q 045566           32 QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD---RCYALTVRYPLMVVGTADRN--LVVF  106 (112)
Q Consensus        32 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~--v~~~  106 (112)
                      ....+..+....+|++|+.+.++++.|...|.|+++++.++........+.   +.+--+.+|..+++.+.-..  ..+|
T Consensus      1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred             cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence            344566778899999999999999999999999999998887654443333   22222336666666544333  4566


Q ss_pred             ECc
Q 045566          107 NLQ  109 (112)
Q Consensus       107 d~~  109 (112)
                      ++.
T Consensus      1173 ~~~ 1175 (1516)
T KOG1832|consen 1173 DAS 1175 (1516)
T ss_pred             ccc
Confidence            654

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=96.30  E-value=0.085  Score=30.15  Aligned_cols=66  Identities=11%  Similarity=0.111  Sum_probs=47.0

Q ss_pred             EcCCCCEEEEEcCCCcEEEEEcCCCCCcEE-------Ee-------eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCC
Q 045566            6 WKDDGTTVFSGGCDKQVKMWPLLSGGQPVT-------VA-------MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ   71 (112)
Q Consensus         6 ~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~-------~~-------~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~   71 (112)
                      +..+++++.+-..+|.+++||+.+.+....       +.       .....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            445788899999999999999987654321       11       2446678888888887776654 57788887654


Q ss_pred             C
Q 045566           72 P   72 (112)
Q Consensus        72 ~   72 (112)
                      .
T Consensus        97 ~   97 (219)
T PF07569_consen   97 G   97 (219)
T ss_pred             c
Confidence            4

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.27  E-value=0.098  Score=31.89  Aligned_cols=76  Identities=17%  Similarity=0.223  Sum_probs=49.1

Q ss_pred             EEEcCCCCEEEEEcC--------C--CcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCC-EEEEe-eCCCcEEEeeCCC
Q 045566            4 STWKDDGTTVFSGGC--------D--KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMN-LLATG-SWDKTLKYWDTRQ   71 (112)
Q Consensus         4 ~~~~~~~~~l~~~~~--------~--~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~~~~~i~~w~~~~   71 (112)
                      +++++..+.|++-..        |  ..|.++|+.+++.+..++. +.++.++..+.+.+ ++++. ..++.+.+||..+
T Consensus       243 ~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t  321 (342)
T PF06433_consen  243 IAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT  321 (342)
T ss_dssp             EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred             eeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcC
Confidence            566765554444311        2  2477788888888887763 24577899988544 55544 4678999999999


Q ss_pred             CCceEEecC
Q 045566           72 PNPVHTQQL   80 (112)
Q Consensus        72 ~~~~~~~~~   80 (112)
                      ++.++....
T Consensus       322 Gk~~~~~~~  330 (342)
T PF06433_consen  322 GKLVRSIEQ  330 (342)
T ss_dssp             --EEEEE--
T ss_pred             CcEEeehhc
Confidence            988877653

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.24  E-value=0.18  Score=33.25  Aligned_cols=100  Identities=16%  Similarity=0.118  Sum_probs=52.6

Q ss_pred             eEEEcCCCCEEEEEcCC-CcEEEE-----------EcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEE---e
Q 045566            3 CSTWKDDGTTVFSGGCD-KQVKMW-----------PLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKY---W   67 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~~-~~v~~~-----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~---w   67 (112)
                      .-.|+|+|+.+++.... ..+++.           ++..++...   .....|..+.|+|||..++... ++.+.+   -
T Consensus       401 ~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vv  476 (591)
T PRK13616        401 RPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVE  476 (591)
T ss_pred             CceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEE
Confidence            45799998877666432 222222           322222211   2345799999999999877654 456665   2


Q ss_pred             eCCCCC-ce---EEecC----CCeEEEEeeCCCEEEEEeCCCcEEEEE
Q 045566           68 DTRQPN-PV---HTQQL----PDRCYALTVRYPLMVVGTADRNLVVFN  107 (112)
Q Consensus        68 ~~~~~~-~~---~~~~~----~~~~~~~~~~~~~~~~~~~d~~v~~~d  107 (112)
                      ....+. .+   ..+..    ....+.|..++.+ +++..++...+|.
T Consensus       477 r~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L-~V~~~~~~~~v~~  523 (591)
T PRK13616        477 QTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSL-VVGRSDPEHPVWY  523 (591)
T ss_pred             eCCCCceeecccEEeecccCCccccceEecCCEE-EEEecCCCCceEE
Confidence            222222 11   11111    1245677777764 4555555444553

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.22  E-value=0.021  Score=32.61  Aligned_cols=63  Identities=19%  Similarity=0.277  Sum_probs=44.3

Q ss_pred             CCCEEEEEcCCCcEEEEEcCCCCCcEEEeecc-CCeeEEEEccCCCEEEEe--eCCCcEEEeeCCC
Q 045566            9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHD-APIKEVAWIPEMNLLATG--SWDKTLKYWDTRQ   71 (112)
Q Consensus         9 ~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~--~~~~~i~~w~~~~   71 (112)
                      ++.+..+++.++.++.|+....+.+...-.|. .++........+..+...  +.+..++.|++..
T Consensus       113 ~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  113 DSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            34577888999999999988777665555555 455555555556666666  6777788887754

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.10  E-value=0.16  Score=31.49  Aligned_cols=107  Identities=12%  Similarity=0.057  Sum_probs=74.5

Q ss_pred             eEEEcCCCCEEEE-EcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeC---CCcEEEeeCCCCCceEEe
Q 045566            3 CSTWKDDGTTVFS-GGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW---DKTLKYWDTRQPNPVHTQ   78 (112)
Q Consensus         3 ~~~~~~~~~~l~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~i~~w~~~~~~~~~~~   78 (112)
                      .++.++.+..+.. ...+..+.+.|....+.......-. .-..+++++++..+..+..   ++.+.+.|..+.+.+...
T Consensus        78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~  156 (381)
T COG3391          78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATI  156 (381)
T ss_pred             ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEE
Confidence            4567777775544 4456889999977666655544222 4578899998876655544   688888898888777665


Q ss_pred             cCC--CeEEEEeeCCCEEEEEe-CCCcEEEEECcC
Q 045566           79 QLP--DRCYALTVRYPLMVVGT-ADRNLVVFNLQN  110 (112)
Q Consensus        79 ~~~--~~~~~~~~~~~~~~~~~-~d~~v~~~d~~~  110 (112)
                      ...  ...+++.|++..+++.. .++.+.+.|...
T Consensus       157 ~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~  191 (381)
T COG3391         157 PVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSG  191 (381)
T ss_pred             ecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCC
Confidence            432  26788999999777766 577888888654

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=96.03  E-value=0.19  Score=32.65  Aligned_cols=71  Identities=18%  Similarity=0.096  Sum_probs=41.8

Q ss_pred             CCCCEEEEEcCCCcEEEEEcCC----CCCcEE--Eee--------------------ccCCeeEEEEcc----CCCEEEE
Q 045566            8 DDGTTVFSGGCDKQVKMWPLLS----GGQPVT--VAM--------------------HDAPIKEVAWIP----EMNLLAT   57 (112)
Q Consensus         8 ~~~~~l~~~~~~~~v~~~~~~~----~~~~~~--~~~--------------------~~~~v~~~~~~~----~~~~~~~   57 (112)
                      ++...++.+..||.+.......    +.....  +..                    .......++++.    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3556677777888877776543    111111  000                    123345566655    6778999


Q ss_pred             eeCCCcEEEeeCCCCCceEEe
Q 045566           58 GSWDKTLKYWDTRQPNPVHTQ   78 (112)
Q Consensus        58 ~~~~~~i~~w~~~~~~~~~~~   78 (112)
                      .+.|+.+++||+.+++++...
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999885543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.01  E-value=0.25  Score=32.83  Aligned_cols=92  Identities=15%  Similarity=0.274  Sum_probs=57.3

Q ss_pred             EEEcCCCcEEEEEcCCCCCcEEEe-eccCCeeEEEEcc--CCCEEEEeeCCCcEEEeeCC-----CC----CceEEe---
Q 045566           14 FSGGCDKQVKMWPLLSGGQPVTVA-MHDAPIKEVAWIP--EMNLLATGSWDKTLKYWDTR-----QP----NPVHTQ---   78 (112)
Q Consensus        14 ~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~~~~~~~~~~i~~w~~~-----~~----~~~~~~---   78 (112)
                      ++-+....+.|||.+.+.....-. ...+.|..+.|..  +++.+++.+..+.|.++...     +.    .++..+   
T Consensus        45 ~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~  124 (631)
T PF12234_consen   45 VVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDIS  124 (631)
T ss_pred             EEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEee
Confidence            333445679999987666332221 3467899999964  88999999999999998542     11    122222   


Q ss_pred             --c-CCCeEEEEeeCCCEEEEEeCCCcEEEEE
Q 045566           79 --Q-LPDRCYALTVRYPLMVVGTADRNLVVFN  107 (112)
Q Consensus        79 --~-~~~~~~~~~~~~~~~~~~~~d~~v~~~d  107 (112)
                        . .++....|..+|..++.+  +..+.++|
T Consensus       125 ~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~d  154 (631)
T PF12234_consen  125 SHTPHPIGDSIWLKDGTLVVGS--GNQLFVFD  154 (631)
T ss_pred             cCCCCCccceeEecCCeEEEEe--CCEEEEEC
Confidence              1 244566777777544433  34566665

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=95.93  E-value=0.18  Score=30.42  Aligned_cols=95  Identities=17%  Similarity=0.163  Sum_probs=56.4

Q ss_pred             EEEEEcCCCcEEEEEcCCCCCcEEEeecc--CCeeEEEEccCCCEEEEeeCCCcEEEeeCCCC-CceEEe---cCC--Ce
Q 045566           12 TVFSGGCDKQVKMWPLLSGGQPVTVAMHD--APIKEVAWIPEMNLLATGSWDKTLKYWDTRQP-NPVHTQ---QLP--DR   83 (112)
Q Consensus        12 ~l~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~-~~~~~~---~~~--~~   83 (112)
                      .++.+. ++.+.+|++...+.+.......  ..+.++..  .+.+++.|+....+.++..+.. ..+...   ..+  ..
T Consensus       100 ~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~  176 (321)
T PF03178_consen  100 RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVT  176 (321)
T ss_dssp             EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEE
T ss_pred             EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEE
Confidence            344444 3789999988777333332222  34555544  4668899988888887755432 212222   122  24


Q ss_pred             EEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           84 CYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        84 ~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                      +..+-++++.++.+..+|.+.++...
T Consensus       177 ~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  177 AAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             EEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             EEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            45555466789999999999988764

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PHA02713 hypothetical protein; Provisional

Probab=95.92  E-value=0.11  Score=33.96  Aligned_cols=61  Identities=7%  Similarity=0.000  Sum_probs=35.8

Q ss_pred             CCCEEEEeeCC------CcEEEeeCCC-CCceEEecCCC---eEEEEeeCCCEEEEEeCCC--cEEEEECcCC
Q 045566           51 EMNLLATGSWD------KTLKYWDTRQ-PNPVHTQQLPD---RCYALTVRYPLMVVGTADR--NLVVFNLQNP  111 (112)
Q Consensus        51 ~~~~~~~~~~~------~~i~~w~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~--~v~~~d~~~~  111 (112)
                      ++...+.|+.+      ..+..||+.+ .+.......+.   ..-....++.+.++|+.++  .+..||..+.
T Consensus       463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~  535 (557)
T PHA02713        463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYESYMLQDTFNVYTY  535 (557)
T ss_pred             CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEECCEEEEEeeecceeehhhcCcccc
Confidence            46666667653      2467889887 55432222221   1122234677888888887  6777777664

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.88  E-value=0.26  Score=32.05  Aligned_cols=26  Identities=15%  Similarity=-0.062  Sum_probs=19.4

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEc
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPL   27 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~   27 (112)
                      ..+..++.|..++-.+.+|.+-++-.
T Consensus       107 ~~vl~s~~GS~VaL~G~~Gi~vMeLp  132 (741)
T KOG4460|consen  107 YQVLLSPTGSHVALIGIKGLMVMELP  132 (741)
T ss_pred             EEEEecCCCceEEEecCCeeEEEEch
Confidence            45667889998888888887766543

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.72  E-value=0.051  Score=22.63  Aligned_cols=29  Identities=14%  Similarity=0.157  Sum_probs=23.3

Q ss_pred             CeeEEEcCCC---CEEEEEcCCCcEEEEEcCC
Q 045566            1 VLCSTWKDDG---TTVFSGGCDKQVKMWPLLS   29 (112)
Q Consensus         1 v~~~~~~~~~---~~l~~~~~~~~v~~~~~~~   29 (112)
                      |.++.|+|+.   .+|+.+=..+.|.++|+++
T Consensus         3 vR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    3 VRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             eEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4689999844   4777777778999999884

It contains a characteristic DLL sequence motif.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.69  E-value=0.34  Score=31.90  Aligned_cols=108  Identities=13%  Similarity=0.167  Sum_probs=60.5

Q ss_pred             CeeEEEcCC----CCEEEEEcCCCcEEEEEcCC-----CCCcEEEeec---cCC--eeEEEEccCCCEEEEeeCCCcEEE
Q 045566            1 VLCSTWKDD----GTTVFSGGCDKQVKMWPLLS-----GGQPVTVAMH---DAP--IKEVAWIPEMNLLATGSWDKTLKY   66 (112)
Q Consensus         1 v~~~~~~~~----~~~l~~~~~~~~v~~~~~~~-----~~~~~~~~~~---~~~--v~~~~~~~~~~~~~~~~~~~~i~~   66 (112)
                      |..++|.|-    ...+........|.+|-+..     ++.+.....+   .-+  -....|+|....++.-.....-.+
T Consensus        59 V~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~  138 (671)
T PF15390_consen   59 VHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVL  138 (671)
T ss_pred             eeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEe
Confidence            457889984    33455555668899998752     2222111111   111  134569998777665555444445


Q ss_pred             eeCCCCCce--EEec--CCCeEEEEeeCCCEEEEEeCCC-cEEEEEC
Q 045566           67 WDTRQPNPV--HTQQ--LPDRCYALTVRYPLMVVGTADR-NLVVFNL  108 (112)
Q Consensus        67 w~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~d~-~v~~~d~  108 (112)
                      ++++.....  ..++  +.+.+.+|..+|+.++++-... .-++||-
T Consensus       139 ~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  139 PSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             eeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence            555433222  2222  2346788999999887764442 4568874

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.66  E-value=0.26  Score=31.97  Aligned_cols=92  Identities=12%  Similarity=0.075  Sum_probs=55.9

Q ss_pred             EEEcCCCcEEEEEcCCCCC--cEEEeec----cCCeeEEEEccCCCEEEEeeCCCcEEEeeCCC---CCceEEecCCCeE
Q 045566           14 FSGGCDKQVKMWPLLSGGQ--PVTVAMH----DAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ---PNPVHTQQLPDRC   84 (112)
Q Consensus        14 ~~~~~~~~v~~~~~~~~~~--~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~---~~~~~~~~~~~~~   84 (112)
                      +.|-.+..|.-||++-...  +.--..|    .....|.+-..+| +++.|+.+|.|++||.-.   ...+..+..++..
T Consensus       398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~h  476 (644)
T KOG2395|consen  398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKH  476 (644)
T ss_pred             EEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceee
Confidence            4455677888899874333  1111111    2345555555455 788999999999998622   2233444556677


Q ss_pred             EEEeeCCCEEEEEeCCCcEEEEE
Q 045566           85 YALTVRYPLMVVGTADRNLVVFN  107 (112)
Q Consensus        85 ~~~~~~~~~~~~~~~d~~v~~~d  107 (112)
                      +....+|.+++..+.. .+.+-+
T Consensus       477 VdvtadGKwil~Tc~t-yLlLi~  498 (644)
T KOG2395|consen  477 VDVTADGKWILATCKT-YLLLID  498 (644)
T ss_pred             EEeeccCcEEEEeccc-EEEEEE
Confidence            7788889887766543 444433

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.65  E-value=0.054  Score=30.93  Aligned_cols=27  Identities=11%  Similarity=0.084  Sum_probs=16.7

Q ss_pred             EccCCCEEEEeeCCCcEEEeeCCCCCc
Q 045566           48 WIPEMNLLATGSWDKTLKYWDTRQPNP   74 (112)
Q Consensus        48 ~~~~~~~~~~~~~~~~i~~w~~~~~~~   74 (112)
                      +...+.++++.+.+|.+++||+.+.+.
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~   44 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKA   44 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCee
Confidence            344566666666677777777665544

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.37  E-value=0.25  Score=28.31  Aligned_cols=101  Identities=10%  Similarity=0.063  Sum_probs=60.1

Q ss_pred             CCCEEEEEcC--CCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEE-EEeeCCCcEEEeeCCCCCceEEecCCCeEE
Q 045566            9 DGTTVFSGGC--DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLL-ATGSWDKTLKYWDTRQPNPVHTQQLPDRCY   85 (112)
Q Consensus         9 ~~~~l~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~   85 (112)
                      +|.++.+.+.  ...|++||+.+++.+....-....+..--...-+..+ ...-.++.-..+|.++.+.+..+..+....
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW  134 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW  134 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence            3445555443  3468899988777655432111111111111113333 333457778888888888887777777777


Q ss_pred             EEeeCCCEEEEEeCCCcEEEEECc
Q 045566           86 ALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        86 ~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                      .+..++..++++.....+++-|.+
T Consensus       135 gLt~d~~~LimsdGsatL~frdP~  158 (262)
T COG3823         135 GLTSDDKNLIMSDGSATLQFRDPK  158 (262)
T ss_pred             eeecCCcceEeeCCceEEEecCHH
Confidence            777777778877777677666544

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.35  E-value=0.56  Score=32.21  Aligned_cols=94  Identities=12%  Similarity=0.180  Sum_probs=59.4

Q ss_pred             CeeEEEcCCCCE-EEEEcCCCcEEEEEcCCCCCc-EEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566            1 VLCSTWKDDGTT-VFSGGCDKQVKMWPLLSGGQP-VTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ   78 (112)
Q Consensus         1 v~~~~~~~~~~~-l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~   78 (112)
                      |+.+++..++.. ++++. -..|.+|.+....+. ..+..+...+.|..+++....++.+ .+..+.+|+....++...+
T Consensus       174 ITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca-~~e~l~fY~sd~~~~cfaf  251 (933)
T KOG2114|consen  174 ITGLALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA-GSEFLYFYDSDGRGPCFAF  251 (933)
T ss_pred             ceeeEEecCCceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEe-cCceEEEEcCCCcceeeee
Confidence            567788877776 34333 357999998744433 3466788889999998855444433 4567999998877777777


Q ss_pred             cCCC-eEEEEeeCCCEEEE
Q 045566           79 QLPD-RCYALTVRYPLMVV   96 (112)
Q Consensus        79 ~~~~-~~~~~~~~~~~~~~   96 (112)
                      .... ..+.|...|..+++
T Consensus       252 ~~g~kk~~~~~~~g~~L~v  270 (933)
T KOG2114|consen  252 EVGEKKEMLVFSFGLLLCV  270 (933)
T ss_pred             cCCCeEEEEEEecCEEEEE
Confidence            6333 33333333444433

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=95.15  E-value=0.33  Score=28.43  Aligned_cols=95  Identities=15%  Similarity=0.130  Sum_probs=53.4

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCC---CCCcEEE--------eeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeC
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLS---GGQPVTV--------AMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDT   69 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~---~~~~~~~--------~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~   69 (112)
                      -.++|+|.++.|+.+.+..-..+|.+..   .......        ......+..+.++| .+.+++.+..++.+...| 
T Consensus       121 EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-  199 (248)
T PF06977_consen  121 EGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-  199 (248)
T ss_dssp             EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--
T ss_pred             EEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-
Confidence            3689999877777777766666776653   1111111        11234578899999 566777777888899888 


Q ss_pred             CCCCceEEec--C----------CCeEEEEeeCCCEEEEE
Q 045566           70 RQPNPVHTQQ--L----------PDRCYALTVRYPLMVVG   97 (112)
Q Consensus        70 ~~~~~~~~~~--~----------~~~~~~~~~~~~~~~~~   97 (112)
                      .+++.+..+.  .          ....++|.++|++.++.
T Consensus       200 ~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs  239 (248)
T PF06977_consen  200 RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS  239 (248)
T ss_dssp             TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred             CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence            4555544332  2          23578999988655554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.12  E-value=0.34  Score=28.35  Aligned_cols=96  Identities=13%  Similarity=0.144  Sum_probs=59.5

Q ss_pred             eeEEEcCCCCEE-EEEcCCCcEEEEE--cCCCCC-----cEEEee---ccC-CeeEEEEccCCCEEEEeeCCCcEEEeeC
Q 045566            2 LCSTWKDDGTTV-FSGGCDKQVKMWP--LLSGGQ-----PVTVAM---HDA-PIKEVAWIPEMNLLATGSWDKTLKYWDT   69 (112)
Q Consensus         2 ~~~~~~~~~~~l-~~~~~~~~v~~~~--~~~~~~-----~~~~~~---~~~-~v~~~~~~~~~~~~~~~~~~~~i~~w~~   69 (112)
                      +.++|+.+.+.+ ++-+.+..|.-||  ..++..     +..++.   .+. .--.++...+|.++++.-..+.|...|+
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp  240 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP  240 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence            357788777665 4456777887777  444432     222211   111 1123444667888888888899999999


Q ss_pred             CCCCceEEecCCC---eEEEEe-eCCCEEEEE
Q 045566           70 RQPNPVHTQQLPD---RCYALT-VRYPLMVVG   97 (112)
Q Consensus        70 ~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~   97 (112)
                      .+++.+..+..+.   ++.+|. ++-..+++.
T Consensus       241 ~tGK~L~eiklPt~qitsccFgGkn~d~~yvT  272 (310)
T KOG4499|consen  241 TTGKILLEIKLPTPQITSCCFGGKNLDILYVT  272 (310)
T ss_pred             CCCcEEEEEEcCCCceEEEEecCCCccEEEEE
Confidence            9999988887654   556664 333444443

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.06  E-value=0.4  Score=28.87  Aligned_cols=55  Identities=13%  Similarity=0.218  Sum_probs=40.7

Q ss_pred             EEcCCCCEEEEEcC-----CCcEEEEEcCCC-CCcEEEeeccCCeeEEEEccCCCEEEEee
Q 045566            5 TWKDDGTTVFSGGC-----DKQVKMWPLLSG-GQPVTVAMHDAPIKEVAWIPEMNLLATGS   59 (112)
Q Consensus         5 ~~~~~~~~l~~~~~-----~~~v~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~   59 (112)
                      .|||+|++|...-+     -|.|-+||.+.+ +.+.+++.|.-.-+.+.+.+||+.++...
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence            58899998876532     367889998743 23456777777778899999999887664

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=94.92  E-value=0.54  Score=29.73  Aligned_cols=75  Identities=12%  Similarity=0.041  Sum_probs=49.1

Q ss_pred             eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC-CCeEEEEee----C---------------CC--EEE
Q 045566           38 MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL-PDRCYALTV----R---------------YP--LMV   95 (112)
Q Consensus        38 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~-~~~~~~~~~----~---------------~~--~~~   95 (112)
                      .....+.++..+|.+.+.++.+.=|.|.++|+.+...++..+. ....+.|-.    .               ..  +++
T Consensus       305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI  384 (415)
T PF14655_consen  305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI  384 (415)
T ss_pred             cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence            3445678999999999888888889999999988776544432 111111110    0               01  233


Q ss_pred             EEeCCCcEEEEECcCCC
Q 045566           96 VGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        96 ~~~~d~~v~~~d~~~~~  112 (112)
                      -...-|.|.+|.++++.
T Consensus       385 yaprRg~lEvW~~~~g~  401 (415)
T PF14655_consen  385 YAPRRGILEVWSMRQGP  401 (415)
T ss_pred             EeccCCeEEEEecCCCC
Confidence            35667889999998863

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.88  E-value=0.46  Score=28.71  Aligned_cols=65  Identities=15%  Similarity=0.110  Sum_probs=37.9

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEE-eeccCCeeEEEEccCCCEEEEeeCCCcEEEee
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTV-AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD   68 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~   68 (112)
                      ..+.-+++|+++++++.-....-|+.-.. .-... ......+..+.|.|++.+.+.+ ..+.+++=+
T Consensus       148 ~~~~r~~dG~~vavs~~G~~~~s~~~G~~-~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~  213 (302)
T PF14870_consen  148 NDITRSSDGRYVAVSSRGNFYSSWDPGQT-TWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD  213 (302)
T ss_dssp             EEEEE-TTS-EEEEETTSSEEEEE-TT-S-S-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred             EeEEECCCCcEEEEECcccEEEEecCCCc-cceEEccCccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence            34566789999988877666667764221 11222 2345789999999998876655 778888766

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=94.85  E-value=0.56  Score=29.57  Aligned_cols=39  Identities=18%  Similarity=0.123  Sum_probs=30.5

Q ss_pred             cCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566           40 DAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ   78 (112)
Q Consensus        40 ~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~   78 (112)
                      .+++..++++|++++++.-..+|.+.+.+..-.+.+..+
T Consensus       216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~  254 (410)
T PF04841_consen  216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEF  254 (410)
T ss_pred             CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEe
Confidence            357999999999999999999999988865544444444

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=94.70  E-value=0.27  Score=30.62  Aligned_cols=76  Identities=13%  Similarity=0.077  Sum_probs=36.2

Q ss_pred             EEcCCCCEEEE-EcCCCc--EEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            5 TWKDDGTTVFS-GGCDKQ--VKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         5 ~~~~~~~~l~~-~~~~~~--v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      +|.++|++|+. +..++.  +.+.|+.+++..+.-.+.........++|+.+.++-...++.+.-.|+.+.+....+..
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~  120 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV  120 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence            67888876544 444554  55566665554433232222222455667777765555566778788888765444433

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.59  E-value=0.2  Score=32.52  Aligned_cols=61  Identities=7%  Similarity=0.071  Sum_probs=45.4

Q ss_pred             CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCC
Q 045566            9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR   70 (112)
Q Consensus         9 ~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~   70 (112)
                      ...+++.+++.|-+++||--.......+++-...|..+....+|.++++.|.. ++.+-|++
T Consensus       572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~  632 (776)
T COG5167         572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP  632 (776)
T ss_pred             cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence            45689999999999999943333333567778889999999999988777654 56666654

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=94.22  E-value=1  Score=29.82  Aligned_cols=99  Identities=16%  Similarity=0.257  Sum_probs=54.3

Q ss_pred             CCEEEEEcCCC------cEEEEEcCCCCCc--EEEeeccCCeeEEEEccCCCEEEEeeCC------CcEEEeeCCCCCce
Q 045566           10 GTTVFSGGCDK------QVKMWPLLSGGQP--VTVAMHDAPIKEVAWIPEMNLLATGSWD------KTLKYWDTRQPNPV   75 (112)
Q Consensus        10 ~~~l~~~~~~~------~v~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~------~~i~~w~~~~~~~~   75 (112)
                      +..++.|+.++      .+..||..++.-.  ..++ ....-.+++.. ++...++|+.+      ..+..||.++.+..
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~  362 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT  362 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence            44667777663      4677887655321  1222 12222333333 45677888887      34667888877644


Q ss_pred             EEecCCCe--EEEE-eeCCCEEEEEeCCCc-----EEEEECcC
Q 045566           76 HTQQLPDR--CYAL-TVRYPLMVVGTADRN-----LVVFNLQN  110 (112)
Q Consensus        76 ~~~~~~~~--~~~~-~~~~~~~~~~~~d~~-----v~~~d~~~  110 (112)
                      ........  .... .-+|...++|+.||.     +..||.++
T Consensus       363 ~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~  405 (571)
T KOG4441|consen  363 PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVT  405 (571)
T ss_pred             ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCC
Confidence            32222221  1222 346778888888864     55566554

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=94.15  E-value=0.72  Score=27.84  Aligned_cols=66  Identities=11%  Similarity=0.071  Sum_probs=46.3

Q ss_pred             eeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCC-C-------eEEEEeeCCCEEEEEeCCCcEEEEEC
Q 045566           43 IKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP-D-------RCYALTVRYPLMVVGTADRNLVVFNL  108 (112)
Q Consensus        43 v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~d~~v~~~d~  108 (112)
                      ++++...++|.++++.-.-..|.+.+.++++.+..+..+ .       ..+++..+-+++-.+..++.|.++|=
T Consensus       146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN  219 (299)
T PF14269_consen  146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN  219 (299)
T ss_pred             eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence            567777778899999988889999999998888777554 1       22444444444444456777777764

>PRK10115 protease 2; Provisional

Probab=94.08  E-value=1.2  Score=30.17  Aligned_cols=105  Identities=9%  Similarity=-0.038  Sum_probs=57.3

Q ss_pred             eeEEEcCCCCEEEEEc-----CCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeC-C-----CcEEEeeCC
Q 045566            2 LCSTWKDDGTTVFSGG-----CDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW-D-----KTLKYWDTR   70 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~-----~~i~~w~~~   70 (112)
                      ..+.|+|++++|+.+.     +...+++.|+.+++.+....... . ..+.|.+++..++-... +     ..+..+++.
T Consensus       130 ~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~-~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lg  207 (686)
T PRK10115        130 GGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV-E-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIG  207 (686)
T ss_pred             eEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc-c-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECC
Confidence            3578899999887753     23457888887776432221111 1 45899998876554432 2     356677777


Q ss_pred             CCC--ceEEecCC---CeEEEE-eeCCCEEEEEeC---CCcEEEEEC
Q 045566           71 QPN--PVHTQQLP---DRCYAL-TVRYPLMVVGTA---DRNLVVFNL  108 (112)
Q Consensus        71 ~~~--~~~~~~~~---~~~~~~-~~~~~~~~~~~~---d~~v~~~d~  108 (112)
                      +..  ....+...   .....+ ..++.+++..+.   ++.+.+++.
T Consensus       208 t~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        208 TPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             CChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            662  22222221   111122 225665544333   346777774

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=93.97  E-value=1.4  Score=30.38  Aligned_cols=103  Identities=11%  Similarity=0.046  Sum_probs=63.6

Q ss_pred             CCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCC--------eeEEEEc----------------cCCCEEEEeeCCCcEE
Q 045566           10 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAP--------IKEVAWI----------------PEMNLLATGSWDKTLK   65 (112)
Q Consensus        10 ~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--------v~~~~~~----------------~~~~~~~~~~~~~~i~   65 (112)
                      +..++.++.++.|.-.|..+++.+..+......        ...+.+-                ..+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            556778888889999998888877665422110        1112221                1234677788899999


Q ss_pred             EeeCCCCCceEEecCCCeE---------------EEEee--CCCEEEEEeC----------CCcEEEEECcCCC
Q 045566           66 YWDTRQPNPVHTQQLPDRC---------------YALTV--RYPLMVVGTA----------DRNLVVFNLQNPQ  112 (112)
Q Consensus        66 ~w~~~~~~~~~~~~~~~~~---------------~~~~~--~~~~~~~~~~----------d~~v~~~d~~~~~  112 (112)
                      -.|.++++.+..+..+...               ..-.|  .+..+++++.          +|.|+-+|.++|+
T Consensus       274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGk  347 (764)
T TIGR03074       274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGA  347 (764)
T ss_pred             EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCc
Confidence            8899988887654321100               01111  2345666643          5789999999885

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=93.85  E-value=0.23  Score=32.30  Aligned_cols=27  Identities=30%  Similarity=0.523  Sum_probs=23.2

Q ss_pred             CCCEEEEEcCCCcEEEEEcCCCCCcEE
Q 045566            9 DGTTVFSGGCDKQVKMWPLLSGGQPVT   35 (112)
Q Consensus         9 ~~~~l~~~~~~~~v~~~~~~~~~~~~~   35 (112)
                      +..++++-+.|+.+++||+.+++.+..
T Consensus       229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~  255 (547)
T PF11715_consen  229 DDTFLFTLSRDHTLRIWSLETGQCLAT  255 (547)
T ss_dssp             TTTEEEEEETTSEEEEEETTTTCEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence            667899999999999999998888443

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=93.82  E-value=1.1  Score=28.70  Aligned_cols=93  Identities=10%  Similarity=0.178  Sum_probs=49.0

Q ss_pred             CCcEEEEEcCCCCCcEEEeecc--CCeeEEEEc--cCCCE-EEEeeCCCcEEEeeC-CCCC----ceEEe----------
Q 045566           19 DKQVKMWPLLSGGQPVTVAMHD--APIKEVAWI--PEMNL-LATGSWDKTLKYWDT-RQPN----PVHTQ----------   78 (112)
Q Consensus        19 ~~~v~~~~~~~~~~~~~~~~~~--~~v~~~~~~--~~~~~-~~~~~~~~~i~~w~~-~~~~----~~~~~----------   78 (112)
                      ..++.+||..+.+..+++.--.  .....+.|.  |+..+ ++.+.....|..|-. ..++    .+-.+          
T Consensus       221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l  300 (461)
T PF05694_consen  221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL  300 (461)
T ss_dssp             --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred             cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence            3679999999999888875322  234566665  33333 444444555555533 2221    11111          


Q ss_pred             ----------cCCCeEEEEeeCCCEEEEEeC-CCcEEEEECcCC
Q 045566           79 ----------QLPDRCYALTVRYPLMVVGTA-DRNLVVFNLQNP  111 (112)
Q Consensus        79 ----------~~~~~~~~~~~~~~~~~~~~~-d~~v~~~d~~~~  111 (112)
                                ..-++.+.++.+.++|+.++. +|.++.||+..+
T Consensus       301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred             cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence                      112356778889999888776 889999999875

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.80  E-value=0.31  Score=34.54  Aligned_cols=68  Identities=16%  Similarity=0.103  Sum_probs=44.3

Q ss_pred             eEEEcCCCC-EEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCC
Q 045566            3 CSTWKDDGT-TVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR   70 (112)
Q Consensus         3 ~~~~~~~~~-~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~   70 (112)
                      ++.|+|.=. -.+++..|+.|++..+........--......++++|+|.|++++.|...|.+.-|...
T Consensus       160 ~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~  228 (1405)
T KOG3630|consen  160 KNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS  228 (1405)
T ss_pred             cccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc
Confidence            455555322 23455666667666554333322222245567999999999999999999999888654

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=93.79  E-value=1.2  Score=29.16  Aligned_cols=101  Identities=11%  Similarity=0.055  Sum_probs=61.4

Q ss_pred             CCEEEEEcCCCcEEEEEcCCCCCcEEEeecc-CCee---E-------EEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566           10 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHD-APIK---E-------VAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ   78 (112)
Q Consensus        10 ~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~v~---~-------~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~   78 (112)
                      +..++.++.++.|.-.|..+++.+.++.... ..+.   +       +++  .+..++.++.++.+.-.|.++++.+...
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            4567777778889999999888776654211 1111   0       111  2345666778899999999999887665


Q ss_pred             cCCCe----EEEEee--CCCEEEEEeC------CCcEEEEECcCCC
Q 045566           79 QLPDR----CYALTV--RYPLMVVGTA------DRNLVVFNLQNPQ  112 (112)
Q Consensus        79 ~~~~~----~~~~~~--~~~~~~~~~~------d~~v~~~d~~~~~  112 (112)
                      .....    .+.-.|  .+..++++..      ++.|..+|.++|+
T Consensus       147 ~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~  192 (527)
T TIGR03075       147 KNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGK  192 (527)
T ss_pred             ccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCc
Confidence            43210    011111  1334555542      6789999988875

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=93.68  E-value=0.63  Score=25.57  Aligned_cols=24  Identities=21%  Similarity=0.473  Sum_probs=15.8

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEc
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPL   27 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~   27 (112)
                      .+++||.||+..+..+  ..|.|.+.
T Consensus         8 ~~l~WS~Dg~laV~t~--~~v~IL~~   31 (173)
T PF12657_consen    8 NALAWSEDGQLAVATG--ESVHILDP   31 (173)
T ss_pred             cCeeECCCCCEEEEcC--CeEEEEec
Confidence            4799999996654433  35666643

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=93.57  E-value=0.22  Score=19.97  Aligned_cols=30  Identities=17%  Similarity=0.230  Sum_probs=20.9

Q ss_pred             CCCCEEEEEc-CCCcEEEEEcCCCCCcEEEe
Q 045566            8 DDGTTVFSGG-CDKQVKMWPLLSGGQPVTVA   37 (112)
Q Consensus         8 ~~~~~l~~~~-~~~~v~~~~~~~~~~~~~~~   37 (112)
                      |++++++++. .++.|.++|..+.+....+.
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~   31 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP   31 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence            5677666654 57889999987766655554

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PHA02713 hypothetical protein; Provisional

Probab=93.34  E-value=1.5  Score=28.91  Aligned_cols=50  Identities=8%  Similarity=0.094  Sum_probs=27.1

Q ss_pred             CCCEEEEeeCCC-----cEEEeeCCCCCceEEecC--CCe-EEEEeeCCCEEEEEeCC
Q 045566           51 EMNLLATGSWDK-----TLKYWDTRQPNPVHTQQL--PDR-CYALTVRYPLMVVGTAD  100 (112)
Q Consensus        51 ~~~~~~~~~~~~-----~i~~w~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~d  100 (112)
                      ++...+.|+.++     .+..||+.+.+....-..  +.. ......++...+.|+.+
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~  408 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRT  408 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCC
Confidence            567777777653     377889876643321111  111 11223466677777654

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=93.25  E-value=1.5  Score=28.71  Aligned_cols=61  Identities=11%  Similarity=0.103  Sum_probs=35.9

Q ss_pred             CcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCC
Q 045566           20 KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP   81 (112)
Q Consensus        20 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~   81 (112)
                      +.+.-+|+.+++.....+......... ..-.+..++.+..+|.++.+|.++++.+......
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g  501 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG  501 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence            345556666665554433211111111 1113456677788999999999999988777554

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=93.08  E-value=0.13  Score=35.48  Aligned_cols=61  Identities=8%  Similarity=0.150  Sum_probs=36.4

Q ss_pred             CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCee----------E-EEEccCCCEEEEeeCCCcEEEeeCC
Q 045566            9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIK----------E-VAWIPEMNLLATGSWDKTLKYWDTR   70 (112)
Q Consensus         9 ~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~----------~-~~~~~~~~~~~~~~~~~~i~~w~~~   70 (112)
                      +.-++..+-.++.+++....+... ..+.+|...++          . -..+|||..++..+.||.+.+|.+.
T Consensus       194 ~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  194 NKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             ccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence            444555566677777665443221 11122322211          1 2278999999999999999998753

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.02  E-value=0.56  Score=33.41  Aligned_cols=55  Identities=13%  Similarity=0.281  Sum_probs=38.4

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEE---ee-ccCCeeEEEEccCCCEEE
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTV---AM-HDAPIKEVAWIPEMNLLA   56 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~~-~~~~v~~~~~~~~~~~~~   56 (112)
                      ++|++|+|.|++++.|-.+|.+.-|... .+....+   +. ....|.++.|.....+++
T Consensus       201 ~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv  259 (1405)
T KOG3630|consen  201 QTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLV  259 (1405)
T ss_pred             eeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEE
Confidence            3689999999999999999999887643 2211122   11 236788999987555544

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=92.99  E-value=0.29  Score=30.02  Aligned_cols=65  Identities=17%  Similarity=0.238  Sum_probs=37.5

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcE-EEee---------------c-cCCeeEEEEccCCCEEEEeeC-CCc
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV-TVAM---------------H-DAPIKEVAWIPEMNLLATGSW-DKT   63 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~-~~~~---------------~-~~~v~~~~~~~~~~~~~~~~~-~~~   63 (112)
                      ....|+|+|+.++.... +.|.+.+..+++..+ +..+               . -+.-..+-|+|++++++.... +..
T Consensus        46 ~~~~~sP~g~~~~~v~~-~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~  124 (353)
T PF00930_consen   46 QDAKWSPDGKYIAFVRD-NNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDERE  124 (353)
T ss_dssp             SEEEE-SSSTEEEEEET-TEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TT
T ss_pred             ccceeecCCCeeEEEec-CceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcC
Confidence            35789999999988764 678888876553322 1111               0 122357889999998876543 333


Q ss_pred             EEEe
Q 045566           64 LKYW   67 (112)
Q Consensus        64 i~~w   67 (112)
                      +..+
T Consensus       125 v~~~  128 (353)
T PF00930_consen  125 VPEY  128 (353)
T ss_dssp             S-EE
T ss_pred             CceE
Confidence            4433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>smart00564 PQQ beta-propeller repeat

Probab=92.91  E-value=0.25  Score=18.69  Aligned_cols=20  Identities=20%  Similarity=0.395  Sum_probs=13.7

Q ss_pred             EEEEEeCCCcEEEEECcCCC
Q 045566           93 LMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        93 ~~~~~~~d~~v~~~d~~~~~  112 (112)
                      .++.++.++.+..+|.++++
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~   27 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGE   27 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCc
Confidence            56666677777777776654

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=92.73  E-value=1.2  Score=26.19  Aligned_cols=47  Identities=11%  Similarity=0.053  Sum_probs=38.4

Q ss_pred             EEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEcc
Q 045566            4 STWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP   50 (112)
Q Consensus         4 ~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~   50 (112)
                      ++...+|.+.+++-..++|...|+.+++.+.++.-....+++.+|--
T Consensus       217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence            34555777777777788999999999999998887788899999953

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=92.67  E-value=2  Score=28.61  Aligned_cols=67  Identities=10%  Similarity=0.140  Sum_probs=40.3

Q ss_pred             EEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe-eccCCeeEEEEccCCCEEEEee-CCCcEEEeeCC
Q 045566            4 STWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA-MHDAPIKEVAWIPEMNLLATGS-WDKTLKYWDTR   70 (112)
Q Consensus         4 ~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~-~~~~i~~w~~~   70 (112)
                      +-|+|....|++-.....--++++.......... ...+.|+|.+|..||+.++.+- ..-.-++||-.
T Consensus       118 CVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  118 CVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             ccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            4588877777654433333345544333222221 3567899999999998776554 44557788853

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=92.46  E-value=1.5  Score=26.54  Aligned_cols=97  Identities=11%  Similarity=0.166  Sum_probs=61.3

Q ss_pred             CCEEEEEcC---------C-CcEEEEEcCCC----CCcEEE--eeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC
Q 045566           10 GTTVFSGGC---------D-KQVKMWPLLSG----GQPVTV--AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN   73 (112)
Q Consensus        10 ~~~l~~~~~---------~-~~v~~~~~~~~----~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~   73 (112)
                      .+++++|..         . |.+.++++...    ..+..+  ....++|++++-- ++. ++.+ .++.+.+|++...+
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~-~g~~l~v~~l~~~~  118 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVA-VGNKLYVYDLDNSK  118 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEE-ETTEEEEEEEETTS
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEe-ecCEEEEEEccCcc
Confidence            467777643         2 88999998874    122222  2356788888765 444 3333 34789999987776


Q ss_pred             -ceE--EecCCCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           74 -PVH--TQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        74 -~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                       ...  .+..+.....+...++++++|..-..+.++..+
T Consensus       119 ~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~  157 (321)
T PF03178_consen  119 TLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYD  157 (321)
T ss_dssp             SEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEE
T ss_pred             cchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEE
Confidence             332  233445566667778899999988888877443

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF01011 PQQ: PQQ enzyme repeat family

Probab=92.18  E-value=0.39  Score=19.14  Aligned_cols=19  Identities=26%  Similarity=0.413  Sum_probs=13.0

Q ss_pred             EEEEeCCCcEEEEECcCCC
Q 045566           94 MVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        94 ~~~~~~d~~v~~~d~~~~~  112 (112)
                      ++.++.+|.+.-.|.++|+
T Consensus         3 v~~~~~~g~l~AlD~~TG~   21 (38)
T PF01011_consen    3 VYVGTPDGYLYALDAKTGK   21 (38)
T ss_dssp             EEEETTTSEEEEEETTTTS
T ss_pred             EEEeCCCCEEEEEECCCCC
Confidence            4555777777777777764

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=92.18  E-value=0.74  Score=31.68  Aligned_cols=66  Identities=14%  Similarity=0.183  Sum_probs=42.7

Q ss_pred             ccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCC--CceEEecCCCeEEEEeeCCCEEEEEeCCCcEEEE
Q 045566           39 HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP--NPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVF  106 (112)
Q Consensus        39 ~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~  106 (112)
                      ....++++.-+|.++.++.+..||.+.+++.-..  ..+.....+...+.|...|  +++...|+++.-|
T Consensus        13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~   80 (1636)
T KOG3616|consen   13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAW   80 (1636)
T ss_pred             ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhhee
Confidence            3455678888899999999999999999886433  2344333333334444333  5555666666555

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=92.03  E-value=1.5  Score=25.69  Aligned_cols=108  Identities=15%  Similarity=0.054  Sum_probs=57.7

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEE--------------EeeccCCeeEEE--EccCCCEEEEeeCCCcEE
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVT--------------VAMHDAPIKEVA--WIPEMNLLATGSWDKTLK   65 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~--------------~~~~~~~v~~~~--~~~~~~~~~~~~~~~~i~   65 (112)
                      ..+..-|+-+.+++-+ |+.+.++++........              .......+...+  -...+...+.....+.+.
T Consensus        39 ~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~  117 (275)
T PF00780_consen   39 TQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKIL  117 (275)
T ss_pred             EEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEE
Confidence            4556666666665554 48999999865443321              111223344444  112344444444555888


Q ss_pred             EeeCCCC-----CceEEecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           66 YWDTRQP-----NPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        66 ~w~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      +|.....     +....+..+.....+...++.++.+..+ ...+.|+.++
T Consensus       118 i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~-~f~~idl~~~  167 (275)
T PF00780_consen  118 IYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSK-GFYLIDLNTG  167 (275)
T ss_pred             EEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCC-ceEEEecCCC
Confidence            8766542     3445555554444444446667777644 4666677654

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=91.97  E-value=2.1  Score=27.08  Aligned_cols=87  Identities=5%  Similarity=-0.009  Sum_probs=45.8

Q ss_pred             EEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEc-----cCCCEEEEeeCCCcEEEeeCCCCCceEEecCCC----
Q 045566           12 TVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI-----PEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD----   82 (112)
Q Consensus        12 ~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~----   82 (112)
                      +++.++ ...++++...+.+..............+.+-     ..+..+++-..+|.++++.+...+.+.....+.    
T Consensus       228 ~vVvvS-e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~  306 (395)
T PF08596_consen  228 YVVVVS-ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDS  306 (395)
T ss_dssp             EEEEE--SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---H
T ss_pred             EEEEEc-ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccc
Confidence            344444 5689999887666544333121122233332     246677888899999999999888776665422    


Q ss_pred             ---eEEEEeeCCCEEEEEeC
Q 045566           83 ---RCYALTVRYPLMVVGTA   99 (112)
Q Consensus        83 ---~~~~~~~~~~~~~~~~~   99 (112)
                         ....+.++|+.++..+.
T Consensus       307 ~~~~~ssis~~Gdi~~~~gp  326 (395)
T PF08596_consen  307 RRLSSSSISRNGDIFYWTGP  326 (395)
T ss_dssp             HHHTT-EE-TTS-EEEE-SS
T ss_pred             ccccccEECCCCCEEEEeCc
Confidence               34566788887666544

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.83  E-value=2.4  Score=27.54  Aligned_cols=92  Identities=11%  Similarity=0.174  Sum_probs=53.2

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCc----EEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCC----C
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQP----VTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ----P   72 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~----~   72 (112)
                      |.++.|++|.+.+|+--.+..|.+++....+..    .+++.....|....|..+.. ++.-...| +.+|.+..    -
T Consensus        69 I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e-~A~i~~~G-~e~y~v~pekrsl  146 (657)
T KOG2377|consen   69 IKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTE-IAFITDQG-IEFYQVLPEKRSL  146 (657)
T ss_pred             eeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCee-EEEEecCC-eEEEEEchhhhhh
Confidence            568999999999999999999999987433322    23344455678888876533 33332222 44443322    1


Q ss_pred             CceEEecCCCeEEEEeeCCCEE
Q 045566           73 NPVHTQQLPDRCYALTVRYPLM   94 (112)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~   94 (112)
                      +.+..+...+.=..+.++.+.+
T Consensus       147 RlVks~~~nvnWy~yc~et~v~  168 (657)
T KOG2377|consen  147 RLVKSHNLNVNWYMYCPETAVI  168 (657)
T ss_pred             hhhhhcccCccEEEEccccceE
Confidence            2233344444444555554433

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=91.65  E-value=0.87  Score=22.11  Aligned_cols=48  Identities=13%  Similarity=0.216  Sum_probs=28.1

Q ss_pred             cEEEeeCCCCCceEEecCCCeEEEEeeCCCEEEEEeC-CCcEEEEECcC
Q 045566           63 TLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTA-DRNLVVFNLQN  110 (112)
Q Consensus        63 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~v~~~d~~~  110 (112)
                      .+..||..+.+....--.....+.++|+++.+++++. .+.|++++.+.
T Consensus        37 ~Vvyyd~~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~   85 (86)
T PF01731_consen   37 NVVYYDGKEVKVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRHK   85 (86)
T ss_pred             eEEEEeCCEeEEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence            3444554332222222233457788888887777655 56788887654

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=91.49  E-value=2.9  Score=27.83  Aligned_cols=102  Identities=15%  Similarity=0.163  Sum_probs=52.8

Q ss_pred             CCCEEEEEcCCCc-----EEEEEcCCCCCcEEEeeccCCeeEEEEcc-CCCEEEEeeCCC------cEEEeeCCCCCceE
Q 045566            9 DGTTVFSGGCDKQ-----VKMWPLLSGGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDK------TLKYWDTRQPNPVH   76 (112)
Q Consensus         9 ~~~~l~~~~~~~~-----v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~------~i~~w~~~~~~~~~   76 (112)
                      +|...++|+.||.     +..||..+.+-...-+ ............ ++...+.|+.++      .+..||..+.+...
T Consensus       380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~  458 (571)
T KOG4441|consen  380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTL  458 (571)
T ss_pred             CCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceee
Confidence            4666788887754     5566665443211111 111222222222 677777777543      45678887766443


Q ss_pred             EecCCCe--EE-EEeeCCCEEEEEeCCCc-----EEEEECcCC
Q 045566           77 TQQLPDR--CY-ALTVRYPLMVVGTADRN-----LVVFNLQNP  111 (112)
Q Consensus        77 ~~~~~~~--~~-~~~~~~~~~~~~~~d~~-----v~~~d~~~~  111 (112)
                      .......  .. ...-++.+.+.|+.|+.     |..||.++.
T Consensus       459 ~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~  501 (571)
T KOG4441|consen  459 IAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETN  501 (571)
T ss_pred             cCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCC
Confidence            3322221  11 22346667777777753     566776653

>PHA03098 kelch-like protein; Provisional

Probab=91.39  E-value=2.8  Score=27.39  Aligned_cols=61  Identities=11%  Similarity=0.177  Sum_probs=32.0

Q ss_pred             CCCEEEEeeCCC--------cEEEeeCCCCCceEEecC--C-CeEEEEeeCCCEEEEEeCC-----CcEEEEECcCC
Q 045566           51 EMNLLATGSWDK--------TLKYWDTRQPNPVHTQQL--P-DRCYALTVRYPLMVVGTAD-----RNLVVFNLQNP  111 (112)
Q Consensus        51 ~~~~~~~~~~~~--------~i~~w~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~d-----~~v~~~d~~~~  111 (112)
                      ++..++.|+.+.        .+..||..+.+....-..  + ........++..++.|+.+     ..+..||..+.
T Consensus       437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence            455666665432        277888876653321111  1 1111222356666666654     46788887654

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=91.33  E-value=1.9  Score=25.35  Aligned_cols=103  Identities=11%  Similarity=0.053  Sum_probs=60.1

Q ss_pred             eeEEEcCCCCEEEEEc-CCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEee-CCCCCce-EEe
Q 045566            2 LCSTWKDDGTTVFSGG-CDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD-TRQPNPV-HTQ   78 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~-~~~~~~~-~~~   78 (112)
                      .+.+++++++.++... .++.-.+|-........... ....+..-.|++++........+....++. ..++... ...
T Consensus        27 ~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v  105 (253)
T PF10647_consen   27 TSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEV  105 (253)
T ss_pred             cceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEe
Confidence            4678899998776554 23333444444444433332 233667778999887777766666666663 2222211 111


Q ss_pred             ---c--CCCeEEEEeeCCCEEEEEe---CCCcEEE
Q 045566           79 ---Q--LPDRCYALTVRYPLMVVGT---ADRNLVV  105 (112)
Q Consensus        79 ---~--~~~~~~~~~~~~~~~~~~~---~d~~v~~  105 (112)
                         .  ..+..+.++|+|..++...   .++.|.+
T Consensus       106 ~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~v  140 (253)
T PF10647_consen  106 DWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYV  140 (253)
T ss_pred             cccccCCceEEEEECCCCcEEEEEEecCCCCeEEE
Confidence               1  1567899999998776655   2455554

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PHA03098 kelch-like protein; Provisional

Probab=91.33  E-value=2.8  Score=27.35  Aligned_cols=61  Identities=15%  Similarity=0.125  Sum_probs=31.3

Q ss_pred             CCCEEEEeeCC------CcEEEeeCCCCCceEEecCCC---eEEEEeeCCCEEEEEeCCC--------cEEEEECcCC
Q 045566           51 EMNLLATGSWD------KTLKYWDTRQPNPVHTQQLPD---RCYALTVRYPLMVVGTADR--------NLVVFNLQNP  111 (112)
Q Consensus        51 ~~~~~~~~~~~------~~i~~w~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~--------~v~~~d~~~~  111 (112)
                      ++..++.|+.+      ..+..||+.+.+.......+.   ...+...++..++.|+.+.        .+..||..+.
T Consensus       389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  466 (534)
T PHA03098        389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTN  466 (534)
T ss_pred             CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence            56666666632      357788887654322111111   1122234555666665431        2777887654

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=91.32  E-value=0.41  Score=17.69  Aligned_cols=23  Identities=13%  Similarity=0.294  Sum_probs=14.7

Q ss_pred             eEEEcCCCCEEEEEcCCCcEEEE
Q 045566            3 CSTWKDDGTTVFSGGCDKQVKMW   25 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~v~~~   25 (112)
                      .++.+++|+.+++=+.++.|+++
T Consensus         6 gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    6 GVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             EEEEETTSEEEEEECCCTEEEEE
T ss_pred             EEEEeCCCCEEEEECCCCEEEEC
Confidence            56666777776666666666553

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=91.14  E-value=2.3  Score=25.98  Aligned_cols=100  Identities=14%  Similarity=0.172  Sum_probs=62.7

Q ss_pred             CCEEEEEcCCCcEEEEEcCCCCCcEEEeec-c-CCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCc-eE--EecCCC-e
Q 045566           10 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMH-D-APIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP-VH--TQQLPD-R   83 (112)
Q Consensus        10 ~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~-~~--~~~~~~-~   83 (112)
                      +++...+..+.-+++.|+.++.....+..- . +.-.++..  .|++...+..+.-+.+.|+.+.+. ..  ....+. .
T Consensus        96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d  173 (370)
T COG5276          96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGD  173 (370)
T ss_pred             ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCC
Confidence            456666777778999999888766544211 1 22233333  577777777666677788876542 21  121111 1


Q ss_pred             EEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           84 CYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        84 ~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      .....-.|++.+.+..|+.+.+-|+.++
T Consensus       174 ~~~v~ISGn~AYvA~~d~GL~ivDVSnp  201 (370)
T COG5276         174 THDVAISGNYAYVAWRDGGLTIVDVSNP  201 (370)
T ss_pred             ceeEEEecCeEEEEEeCCCeEEEEccCC
Confidence            2234456888888889999999998765

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=91.11  E-value=3.1  Score=27.49  Aligned_cols=58  Identities=10%  Similarity=0.119  Sum_probs=37.7

Q ss_pred             CCCEEEEeeCCCcEEEeeCCC---CCceEEecCCCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           51 EMNLLATGSWDKTLKYWDTRQ---PNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        51 ~~~~~~~~~~~~~i~~w~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                      ..-+++.++..|.|++||.-.   ...+..+...+..+....+|.++++.+.. .+.+-|++
T Consensus       572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~  632 (776)
T COG5167         572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP  632 (776)
T ss_pred             cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence            345889999999999998633   22334444455666677788887776644 34444443

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=91.10  E-value=2.3  Score=25.92  Aligned_cols=107  Identities=14%  Similarity=0.067  Sum_probs=56.7

Q ss_pred             eEEEcCCCCEEEEEcC---------CCcEEEEEcC-CCCCcEEEeeccCCeeEEEEccCCCEEEEeeC-CCcEEEeeCCC
Q 045566            3 CSTWKDDGTTVFSGGC---------DKQVKMWPLL-SGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW-DKTLKYWDTRQ   71 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~---------~~~v~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~i~~w~~~~   71 (112)
                      .....|+|.+.+....         ...-.+|-+. .+.....+..+-..-+.++|+|+++.+..... .+.|.-+++..
T Consensus       115 D~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~  194 (307)
T COG3386         115 DGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDP  194 (307)
T ss_pred             ceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCc
Confidence            3456677776665443         1111333333 23333333333445578999999987766654 57777776652


Q ss_pred             --C---Cc--eEEec---CCCeEEEEeeCCCEEEEEeCCC-cEEEEECc
Q 045566           72 --P---NP--VHTQQ---LPDRCYALTVRYPLMVVGTADR-NLVVFNLQ  109 (112)
Q Consensus        72 --~---~~--~~~~~---~~~~~~~~~~~~~~~~~~~~d~-~v~~~d~~  109 (112)
                        .   ..  ...+.   ...-.++.+-+|.+.+++..+| .|..|+..
T Consensus       195 ~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd  243 (307)
T COG3386         195 ATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD  243 (307)
T ss_pred             ccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence              1   11  11111   1123566666776664444443 77777755

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.06  E-value=1.5  Score=29.97  Aligned_cols=32  Identities=6%  Similarity=0.201  Sum_probs=25.5

Q ss_pred             CeeEEEcCC---CCEEEEEcCCCcEEEEEcCCCCC
Q 045566            1 VLCSTWKDD---GTTVFSGGCDKQVKMWPLLSGGQ   32 (112)
Q Consensus         1 v~~~~~~~~---~~~l~~~~~~~~v~~~~~~~~~~   32 (112)
                      |..+.|+|.   +..|++=..|+.+++||+.....
T Consensus       149 i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~~  183 (717)
T PF10168_consen  149 IKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQH  183 (717)
T ss_pred             EEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCCC
Confidence            357899995   57888888899999999976543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.95  E-value=3.1  Score=27.10  Aligned_cols=63  Identities=11%  Similarity=0.018  Sum_probs=42.8

Q ss_pred             CCCEEEEEcCCCcEEEEEcCCCCC---cEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCC
Q 045566            9 DGTTVFSGGCDKQVKMWPLLSGGQ---PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ   71 (112)
Q Consensus         9 ~~~~l~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~   71 (112)
                      |.+....+-..|.+.-|..+....   +......+++|.++.|++|.+.++.--.+..|.+++...
T Consensus        32 DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~   97 (657)
T KOG2377|consen   32 DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIP   97 (657)
T ss_pred             cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCC
Confidence            333333344445666666554332   222334567999999999999999999999999998843

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=90.73  E-value=1.5  Score=23.25  Aligned_cols=104  Identities=10%  Similarity=0.023  Sum_probs=59.5

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCC--------CcEEEeeccCCeeEEEEcc-----CCCEEEEeeCCCcEEEee
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGG--------QPVTVAMHDAPIKEVAWIP-----EMNLLATGSWDKTLKYWD   68 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~--------~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~i~~w~   68 (112)
                      ..-.|......|+.++.-+.|.+++.....        .+..+ .-...|++++-.+     +...++.| ....+..||
T Consensus         2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliG-t~t~llaYD   79 (136)
T PF14781_consen    2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIG-TQTSLLAYD   79 (136)
T ss_pred             eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEe-ccceEEEEE
Confidence            445677777889999999999999875332        22222 2445677776544     23445555 456788899


Q ss_pred             CCCCCceEEe--cCCCeEEEEee---CCCEEEEEeCCCcEEEEE
Q 045566           69 TRQPNPVHTQ--QLPDRCYALTV---RYPLMVVGTADRNLVVFN  107 (112)
Q Consensus        69 ~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~d~~v~~~d  107 (112)
                      +.+...+...  ...+.++.+..   ...-++..+.+..|.-||
T Consensus        80 V~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd  123 (136)
T PF14781_consen   80 VENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFD  123 (136)
T ss_pred             cccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeC
Confidence            9876654322  22344444432   122344444455555444

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=90.67  E-value=2.1  Score=24.67  Aligned_cols=49  Identities=12%  Similarity=0.113  Sum_probs=34.3

Q ss_pred             CEEEEEcCCCcEEEEEcCCCCC--cEEEeeccCCeeEEEEccCCCEEEEeeC
Q 045566           11 TTVFSGGCDKQVKMWPLLSGGQ--PVTVAMHDAPIKEVAWIPEMNLLATGSW   60 (112)
Q Consensus        11 ~~l~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~   60 (112)
                      ..|+.+.....|.+|++...+.  ...+. .-+.|..+.++..|+++++--.
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~   79 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEE   79 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEe
Confidence            4555555567899999883332  33444 3478899999999999998643

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=90.57  E-value=0.64  Score=18.62  Aligned_cols=21  Identities=29%  Similarity=0.301  Sum_probs=13.8

Q ss_pred             CCCEEEEEeCCCcEEEEECcC
Q 045566           90 RYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        90 ~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      .+..++.++.|+.++.+|.++
T Consensus        20 ~~g~vyv~~~dg~l~ald~~t   40 (40)
T PF13570_consen   20 AGGRVYVGTGDGNLYALDAAT   40 (40)
T ss_dssp             CTSEEEEE-TTSEEEEEETT-
T ss_pred             ECCEEEEEcCCCEEEEEeCCC
Confidence            455777777788888777653

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.51  E-value=2.6  Score=25.63  Aligned_cols=96  Identities=14%  Similarity=0.102  Sum_probs=57.5

Q ss_pred             eEEEcCC-CCEEEEEcCCCc-EEEEEcCCCCCcEEEeeccCC--eeEEEEccCCCEEEEeeC-----CCcEEEeeCCCCC
Q 045566            3 CSTWKDD-GTTVFSGGCDKQ-VKMWPLLSGGQPVTVAMHDAP--IKEVAWIPEMNLLATGSW-----DKTLKYWDTRQPN   73 (112)
Q Consensus         3 ~~~~~~~-~~~l~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~-----~~~i~~w~~~~~~   73 (112)
                      .++++|. .+-++.+-.-|+ ..++|....+.++++...++.  .-.=.|+|+|.++...-.     .|.|-+||.+..-
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f  151 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF  151 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence            4567774 344555555554 567888777776665432221  122358999998876533     4778899987542


Q ss_pred             -ceEEe---cCCCeEEEEeeCCCEEEEEe
Q 045566           74 -PVHTQ---QLPDRCYALTVRYPLMVVGT   98 (112)
Q Consensus        74 -~~~~~---~~~~~~~~~~~~~~~~~~~~   98 (112)
                       .+-.+   ......+.+.++|+.++.+.
T Consensus       152 qrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         152 QRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             ceecccccCCcCcceeEEecCCcEEEEeC
Confidence             22222   22234577788888877663

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=90.35  E-value=3.2  Score=26.35  Aligned_cols=50  Identities=10%  Similarity=0.061  Sum_probs=32.7

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeec-cCCeeEEEEcc
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMH-DAPIKEVAWIP   50 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~v~~~~~~~   50 (112)
                      +..++.||+++++|.-..+|.+.+.+..-.+....+... ......+.|.-
T Consensus       219 i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG  269 (410)
T PF04841_consen  219 IIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCG  269 (410)
T ss_pred             eEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEEC
Confidence            356889999999998888899888875444444444322 23445666654

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PHA02790 Kelch-like protein; Provisional

Probab=89.75  E-value=4  Score=26.49  Aligned_cols=58  Identities=12%  Similarity=0.115  Sum_probs=32.6

Q ss_pred             CCCEEEEeeCCCcEEEeeCCCCCceEEecCCC---eEEEEeeCCCEEEEEeCC-----CcEEEEECcCC
Q 045566           51 EMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD---RCYALTVRYPLMVVGTAD-----RNLVVFNLQNP  111 (112)
Q Consensus        51 ~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d-----~~v~~~d~~~~  111 (112)
                      ++...+.|+   .+..||+++.+....-..+.   ..-....++.+.+.|+.+     ..+..||..+.
T Consensus       407 ~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        407 GRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             CCEEEEECC---ceEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCC
Confidence            456666663   46788887765432221111   122223466777777754     35778887764

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=89.72  E-value=3.6  Score=25.99  Aligned_cols=103  Identities=12%  Similarity=0.123  Sum_probs=45.2

Q ss_pred             EEcCCCCEEEEE-----cCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCC----------------c
Q 045566            5 TWKDDGTTVFSG-----GCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDK----------------T   63 (112)
Q Consensus         5 ~~~~~~~~l~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----------------~   63 (112)
                      -|.|+|..+.--     +.+..|.-+++.+++......  ......+-.++++++++.=+.|.                .
T Consensus       244 fw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~  321 (386)
T PF14583_consen  244 FWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPW  321 (386)
T ss_dssp             EE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEE--E-SEEEEEE-TTSSEEEEEE-------------------E
T ss_pred             cccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcE
Confidence            477888765442     223345556666655432211  12333444467888876543332                3


Q ss_pred             EEEeeCCCCCce--EEec-----------CCCeEEEEeeCCCEEE-EEeCCCcEEEEECc
Q 045566           64 LKYWDTRQPNPV--HTQQ-----------LPDRCYALTVRYPLMV-VGTADRNLVVFNLQ  109 (112)
Q Consensus        64 i~~w~~~~~~~~--~~~~-----------~~~~~~~~~~~~~~~~-~~~~d~~v~~~d~~  109 (112)
                      |.++++..+...  ..+.           .......|+|++++++ ++...|...||-++
T Consensus       322 i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~  381 (386)
T PF14583_consen  322 IYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE  381 (386)
T ss_dssp             EEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred             EEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence            556677655422  2211           1124678999998654 55567777776443

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=89.31  E-value=3.5  Score=25.29  Aligned_cols=106  Identities=8%  Similarity=0.001  Sum_probs=63.2

Q ss_pred             eEEEcCCCCEEEEEcCCCcEEEEEcC------CCCC-cEEEee-----ccCCeeEEEEccCC------------CEEEEe
Q 045566            3 CSTWKDDGTTVFSGGCDKQVKMWPLL------SGGQ-PVTVAM-----HDAPIKEVAWIPEM------------NLLATG   58 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~v~~~~~~------~~~~-~~~~~~-----~~~~v~~~~~~~~~------------~~~~~~   58 (112)
                      .++++|.+.+-++...-+...+||..      ..++ ..+++.     .....+.+.|+...            ..|+.+
T Consensus        27 Gia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~  106 (336)
T TIGR03118        27 GLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFV  106 (336)
T ss_pred             eeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEE
Confidence            47899988888877778899999986      1222 223331     12355677776422            236778


Q ss_pred             eCCCcEEEeeCCCCCc-----eEEecC-----CCeEEEEeeC--CCEEEEEeC-CCcEEEEEC
Q 045566           59 SWDKTLKYWDTRQPNP-----VHTQQL-----PDRCYALTVR--YPLMVVGTA-DRNLVVFNL  108 (112)
Q Consensus        59 ~~~~~i~~w~~~~~~~-----~~~~~~-----~~~~~~~~~~--~~~~~~~~~-d~~v~~~d~  108 (112)
                      +++|+|.-|.......     ......     -.+.+++...  +.+|+.+.. .++|.+||-
T Consensus       107 tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~  169 (336)
T TIGR03118       107 TEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKG  169 (336)
T ss_pred             eCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecC
Confidence            8999999998533222     111111     1134555433  556666654 577888873

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF14779 BBS1: Ciliary BBSome complex subunit 1

Probab=89.08  E-value=3.3  Score=24.63  Aligned_cols=66  Identities=18%  Similarity=0.123  Sum_probs=43.1

Q ss_pred             CCeeEEEEcc----C---CCEEEEeeCCCcEEEeeCCCCCceEEecCCCeE------EEEeeCCCEEEEEeCCCcEEEE
Q 045566           41 APIKEVAWIP----E---MNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRC------YALTVRYPLMVVGTADRNLVVF  106 (112)
Q Consensus        41 ~~v~~~~~~~----~---~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~d~~v~~~  106 (112)
                      ..|+|++--.    +   -..++.|.+++.|.+.|.+.-..+.....+...      -.+..-+-.+++++.||.|++.
T Consensus       177 t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~i  255 (257)
T PF14779_consen  177 TVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYTI  255 (257)
T ss_pred             ceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEEE
Confidence            3567766543    1   247889999999999998877766665544321      1222123357888899998764

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=89.01  E-value=5.7  Score=27.33  Aligned_cols=100  Identities=10%  Similarity=-0.016  Sum_probs=64.2

Q ss_pred             CCCEEEEEcCCCcEEEEEcCC-------C----CC--------cEEEeeccCCeeEEEEc--cCCCEEEEeeCCCcEEEe
Q 045566            9 DGTTVFSGGCDKQVKMWPLLS-------G----GQ--------PVTVAMHDAPIKEVAWI--PEMNLLATGSWDKTLKYW   67 (112)
Q Consensus         9 ~~~~l~~~~~~~~v~~~~~~~-------~----~~--------~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~i~~w   67 (112)
                      +...|+.|..||.|.+|.+++       .    +.        +.....-......++++  ...+++|.+.....|.+|
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF  192 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF  192 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence            345788899999999997521       0    00        01111234567888888  677888888888888887


Q ss_pred             eCCC--CCce----EEecCCCeEEEEeeCC---C---EEEEEeCCCcEEEEEC
Q 045566           68 DTRQ--PNPV----HTQQLPDRCYALTVRY---P---LMVVGTADRNLVVFNL  108 (112)
Q Consensus        68 ~~~~--~~~~----~~~~~~~~~~~~~~~~---~---~~~~~~~d~~v~~~d~  108 (112)
                      -+..  .+..    ......+..++|-++.   .   .+++++-.|.+.+|++
T Consensus       193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            5433  1111    1233455677776532   2   6777888999988876

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=88.78  E-value=1.8  Score=21.20  Aligned_cols=39  Identities=10%  Similarity=0.004  Sum_probs=24.7

Q ss_pred             CCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEe
Q 045566           19 DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATG   58 (112)
Q Consensus        19 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~   58 (112)
                      +|.+..||+.+++....+.+ -..-+.++.++++.+++.+
T Consensus        36 ~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~   74 (89)
T PF03088_consen   36 TGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVA   74 (89)
T ss_dssp             -EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEE
T ss_pred             CcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEE
Confidence            57788888776665433332 3345789999998876655

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=88.76  E-value=4.1  Score=25.30  Aligned_cols=70  Identities=19%  Similarity=0.197  Sum_probs=39.9

Q ss_pred             EEEEEcCCCcEEEEEcCCCCCcEEEeecc--CCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCC
Q 045566           12 TVFSGGCDKQVKMWPLLSGGQPVTVAMHD--APIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD   82 (112)
Q Consensus        12 ~l~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~   82 (112)
                      .++.+..+|.+.-.|..++..+.......  ..+..-.+..+|+ +..++.++.+...|.++++.+.......
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~  141 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG  141 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC
Confidence            44555677877777877666443222110  1111111222555 6667778888888887777776665544

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=88.74  E-value=4.6  Score=25.88  Aligned_cols=100  Identities=11%  Similarity=0.146  Sum_probs=58.1

Q ss_pred             CCEEEEEcCCCcEEEEEcCCCCCc---EEE-eeccCCeeEEEEcc----CCCEEEEeeCCCcEEEeeCCCCC--------
Q 045566           10 GTTVFSGGCDKQVKMWPLLSGGQP---VTV-AMHDAPIKEVAWIP----EMNLLATGSWDKTLKYWDTRQPN--------   73 (112)
Q Consensus        10 ~~~l~~~~~~~~v~~~~~~~~~~~---~~~-~~~~~~v~~~~~~~----~~~~~~~~~~~~~i~~w~~~~~~--------   73 (112)
                      ..++++|+..|.+++|+....+..   ..+ ..-..+|..++..+    .....++.-.-+.+.+|.+....        
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~  116 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ  116 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence            458999999999999998544311   111 22456777777643    22233334566777777763211        


Q ss_pred             ----ceEEecCCC--eEEEEee----C-CCEEEEEeCCCcEEEEECc
Q 045566           74 ----PVHTQQLPD--RCYALTV----R-YPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        74 ----~~~~~~~~~--~~~~~~~----~-~~~~~~~~~d~~v~~~d~~  109 (112)
                          .+..+..+.  ..++.-+    . ..++.+-+.||.+.+++-+
T Consensus       117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe  163 (418)
T PF14727_consen  117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQE  163 (418)
T ss_pred             EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCC
Confidence                112222222  2334333    1 3578888999999999754

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=88.46  E-value=4.5  Score=25.44  Aligned_cols=56  Identities=14%  Similarity=-0.009  Sum_probs=36.4

Q ss_pred             eEEEEccCCCEEEEe-eCC----CcEEEeeCCCCCceEEe-cCC-CeEEEEeeCCCEEEEEeC
Q 045566           44 KEVAWIPEMNLLATG-SWD----KTLKYWDTRQPNPVHTQ-QLP-DRCYALTVRYPLMVVGTA   99 (112)
Q Consensus        44 ~~~~~~~~~~~~~~~-~~~----~~i~~w~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~   99 (112)
                      ....++|++++++-+ +..    ..+++.|+.+++.+... ... ...+.|.+++..++-...
T Consensus       127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~  189 (414)
T PF02897_consen  127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRF  189 (414)
T ss_dssp             EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEEC
T ss_pred             eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEe
Confidence            356789999988744 222    44999999998765432 222 223888888777655543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=87.69  E-value=4.7  Score=24.78  Aligned_cols=48  Identities=13%  Similarity=0.199  Sum_probs=31.5

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcE---EE----eeccCCeeEEEEccC
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV---TV----AMHDAPIKEVAWIPE   51 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~---~~----~~~~~~v~~~~~~~~   51 (112)
                      ..++|.|+|+.+++-- .|.|++++ ..+....   .+    .........++++|+
T Consensus         5 ~~~a~~pdG~l~v~e~-~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~   59 (331)
T PF07995_consen    5 RSMAFLPDGRLLVAER-SGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD   59 (331)
T ss_dssp             EEEEEETTSCEEEEET-TTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred             eEEEEeCCCcEEEEeC-CceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence            4789999998877554 89999998 3333211   22    123456789999994

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=86.85  E-value=5.1  Score=24.34  Aligned_cols=39  Identities=13%  Similarity=0.044  Sum_probs=30.0

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeec
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMH   39 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~   39 (112)
                      |+++.-.++|.+|++.-.-..|.+.+..+++.+..+.+.
T Consensus       146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~  184 (299)
T PF14269_consen  146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGK  184 (299)
T ss_pred             eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCC
Confidence            456777788999998888788888888887777666544

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.82  E-value=5.2  Score=24.40  Aligned_cols=70  Identities=16%  Similarity=0.169  Sum_probs=44.9

Q ss_pred             eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCC----CeEEEEeeCCCEEEEEeCCCcEEEEE
Q 045566           38 MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP----DRCYALTVRYPLMVVGTADRNLVVFN  107 (112)
Q Consensus        38 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~d~~v~~~d  107 (112)
                      +-...+.++.|+|+.+.+++......-.++--.+++.+...+..    ...+.+-.++.+.++--.++.+.++-
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~  156 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFT  156 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEE
Confidence            34456899999999998888888777777766667766665432    23444444555555544455555543

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=86.78  E-value=0.048  Score=34.81  Aligned_cols=105  Identities=17%  Similarity=0.303  Sum_probs=62.0

Q ss_pred             eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEE-EeeCCCcEEEeeCCCCCceE-EecC
Q 045566            3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA-TGSWDKTLKYWDTRQPNPVH-TQQL   80 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~i~~w~~~~~~~~~-~~~~   80 (112)
                      ...|.|++.-++.++.+..+..||-. ++...... .+.....++|..++..++ .+-..+.+.+||+.+..... ....
T Consensus        39 ~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg  116 (615)
T KOG2247|consen   39 IHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG  116 (615)
T ss_pred             eeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC
Confidence            34677877768888888888888843 44333332 233445677777766544 45567889999986543211 1111


Q ss_pred             --CCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           81 --PDRCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        81 --~~~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                        ...-+.|++....++.+...+.+.+++-.
T Consensus       117 ~~s~sll~wsKg~~el~ig~~~gn~viynhg  147 (615)
T KOG2247|consen  117 TSSKSLLAWSKGTPELVIGNNAGNIVIYNHG  147 (615)
T ss_pred             cchHHHHhhccCCccccccccccceEEEecc
Confidence              11234555656666666666666666543

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=86.70  E-value=8.3  Score=26.62  Aligned_cols=67  Identities=9%  Similarity=0.116  Sum_probs=46.3

Q ss_pred             eEEEc--CCCCEEEEEcCCCcEEEEEcCCCCC---cEEEeeccCCeeEEEEccCC---C---EEEEeeCCCcEEEeeC
Q 045566            3 CSTWK--DDGTTVFSGGCDKQVKMWPLLSGGQ---PVTVAMHDAPIKEVAWIPEM---N---LLATGSWDKTLKYWDT   69 (112)
Q Consensus         3 ~~~~~--~~~~~l~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~---~---~~~~~~~~~~i~~w~~   69 (112)
                      .++++  ...+++|++++...|.+|-......   ...-..+...|.+|.|-++.   .   .+++++-.|.+.+|++
T Consensus       168 GLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  168 GLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            56777  7788999999999998886543211   11111255678889987732   2   6677788999998877

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=86.30  E-value=9  Score=26.64  Aligned_cols=72  Identities=11%  Similarity=0.064  Sum_probs=46.0

Q ss_pred             eeEEEcC-CCCEEEEEcCCCcEEEEEcCCCC----C-cEEEeecc----------CCeeEEEEccCCCEEEEeeCCCcEE
Q 045566            2 LCSTWKD-DGTTVFSGGCDKQVKMWPLLSGG----Q-PVTVAMHD----------APIKEVAWIPEMNLLATGSWDKTLK   65 (112)
Q Consensus         2 ~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~----~-~~~~~~~~----------~~v~~~~~~~~~~~~~~~~~~~~i~   65 (112)
                      ..++|+| +...||+....|...+|++....    . ........          +.-..+.|.++...++.+ ....+.
T Consensus       149 aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~-~r~~l~  227 (765)
T PF10214_consen  149 ADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVC-NRSKLM  227 (765)
T ss_pred             ceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEE-cCCceE
Confidence            3689999 66799999999999999992111    1 11111111          223367787776666655 455677


Q ss_pred             EeeCCCCCc
Q 045566           66 YWDTRQPNP   74 (112)
Q Consensus        66 ~w~~~~~~~   74 (112)
                      ++|+++...
T Consensus       228 ~~d~~~~~~  236 (765)
T PF10214_consen  228 LIDFESNWQ  236 (765)
T ss_pred             EEECCCCCc
Confidence            888876644

These proteins are found in fungi.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=85.43  E-value=2.3  Score=23.36  Aligned_cols=28  Identities=11%  Similarity=0.290  Sum_probs=22.4

Q ss_pred             CeeEEEcCCC------CEEEEEcCCCcEEEEEcC
Q 045566            1 VLCSTWKDDG------TTVFSGGCDKQVKMWPLL   28 (112)
Q Consensus         1 v~~~~~~~~~------~~l~~~~~~~~v~~~~~~   28 (112)
                      |..++|||.|      ..|++...++.|.+|...
T Consensus        88 vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   88 VVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             EEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            4578999944      478888999999999855

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PRK13684 Ycf48-like protein; Provisional

Probab=85.30  E-value=6.7  Score=24.19  Aligned_cols=62  Identities=11%  Similarity=0.127  Sum_probs=34.3

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEE-EEcCCCCCcEEE-eeccCCeeEEEEccCCCEEEEeeCCCcEEE
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKM-WPLLSGGQPVTV-AMHDAPIKEVAWIPEMNLLATGSWDKTLKY   66 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~-~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~   66 (112)
                      ..+.+.|++..++++.. |.+.. ++ ..++.-... ......++.+.+.++++.++.+ ..|.+.+
T Consensus       176 ~~i~~~~~g~~v~~g~~-G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~  239 (334)
T PRK13684        176 RNLRRSPDGKYVAVSSR-GNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRF  239 (334)
T ss_pred             EEEEECCCCeEEEEeCC-ceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEE
Confidence            45677777766665554 44432 22 111222222 2234577888999988876655 4566653

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=84.56  E-value=11  Score=26.21  Aligned_cols=71  Identities=13%  Similarity=0.171  Sum_probs=45.1

Q ss_pred             cCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCC-----ceEEe---cC----C------CeEEEEeeCCCEEEEEeCC
Q 045566           40 DAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPN-----PVHTQ---QL----P------DRCYALTVRYPLMVVGTAD  100 (112)
Q Consensus        40 ~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~-----~~~~~---~~----~------~~~~~~~~~~~~~~~~~~d  100 (112)
                      ..+...++|+| +...++..+..|...+|++....     .....   .+    +      -..+.|..+...+++++. 
T Consensus       145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-  223 (765)
T PF10214_consen  145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-  223 (765)
T ss_pred             CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-
Confidence            34677899999 67799999999999999992111     11000   00    0      024556666666666654 


Q ss_pred             CcEEEEECcCC
Q 045566          101 RNLVVFNLQNP  111 (112)
Q Consensus       101 ~~v~~~d~~~~  111 (112)
                      ..+.++|+++.
T Consensus       224 ~~l~~~d~~~~  234 (765)
T PF10214_consen  224 SKLMLIDFESN  234 (765)
T ss_pred             CceEEEECCCC
Confidence            35777777654

These proteins are found in fungi.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=83.73  E-value=14  Score=26.63  Aligned_cols=102  Identities=15%  Similarity=0.188  Sum_probs=59.0

Q ss_pred             eEEEcCC-CCEEEEEcC----------CCcEEEEEcCCCCCcEEEeec--cCCeeEEEEccCCCEEEEeeCCCcEEEeeC
Q 045566            3 CSTWKDD-GTTVFSGGC----------DKQVKMWPLLSGGQPVTVAMH--DAPIKEVAWIPEMNLLATGSWDKTLKYWDT   69 (112)
Q Consensus         3 ~~~~~~~-~~~l~~~~~----------~~~v~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~   69 (112)
                      +..|..+ +.++++|..          .|.+.++.+...+.+.....+  ++.+.++.. -+|++++  +-+..+++|+.
T Consensus       779 s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA--~In~~vrLye~  855 (1096)
T KOG1897|consen  779 SCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLA--GINQSVRLYEW  855 (1096)
T ss_pred             eeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEE--ecCcEEEEEEc
Confidence            3446665 566776642          477777777664444433222  233333221 1566654  34567899888


Q ss_pred             CCCCceE---EecCCCeEEEEeeCCCEEEEEeCCCcEEEEE
Q 045566           70 RQPNPVH---TQQLPDRCYALTVRYPLMVVGTADRNLVVFN  107 (112)
Q Consensus        70 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d  107 (112)
                      .+.+.++   .+..+...+.+.-.+..+++|..=+++.+..
T Consensus       856 t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~  896 (1096)
T KOG1897|consen  856 TTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQ  896 (1096)
T ss_pred             cccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEE
Confidence            7765443   2334556666677788888887766665543

>PHA02790 Kelch-like protein; Provisional

Probab=83.41  E-value=10  Score=24.74  Aligned_cols=61  Identities=11%  Similarity=0.145  Sum_probs=32.6

Q ss_pred             CCCEEEEeeCC--CcEEEeeCCCCCceEEecCC--C-eEEEEeeCCCEEEEEeCCC---cEEEEECcCC
Q 045566           51 EMNLLATGSWD--KTLKYWDTRQPNPVHTQQLP--D-RCYALTVRYPLMVVGTADR---NLVVFNLQNP  111 (112)
Q Consensus        51 ~~~~~~~~~~~--~~i~~w~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~d~---~v~~~d~~~~  111 (112)
                      ++...+.|+.+  ..+..||..+.+.......+  . .......++...+.|+.++   .+..||.++.
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~  386 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHD  386 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCC
Confidence            56777777753  35777887655432211111  1 1122234666667776543   3667776653

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=82.99  E-value=9.1  Score=28.22  Aligned_cols=34  Identities=21%  Similarity=0.198  Sum_probs=29.4

Q ss_pred             eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCC
Q 045566           38 MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ   71 (112)
Q Consensus        38 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~   71 (112)
                      .+.++|..+.....-..+.+-+..+.+..|++..
T Consensus       240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             CCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence            4567899999988888889999999999999865

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=82.87  E-value=6.2  Score=27.67  Aligned_cols=30  Identities=7%  Similarity=0.119  Sum_probs=25.0

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCC
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGG   31 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~   31 (112)
                      +++.-+|.+..++.++.|+.+.+|+.....
T Consensus        18 ~aiqshp~~~s~v~~~~d~si~lfn~~~r~   47 (1636)
T KOG3616|consen   18 TAIQSHPGGQSFVLAHQDGSIILFNFIPRR   47 (1636)
T ss_pred             eeeeecCCCceEEEEecCCcEEEEeecccc
Confidence            467778999999999999999999875433

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=82.76  E-value=8.6  Score=23.48  Aligned_cols=95  Identities=11%  Similarity=-0.023  Sum_probs=54.4

Q ss_pred             eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCce-EEe---
Q 045566            3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV-HTQ---   78 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~-~~~---   78 (112)
                      .++-+|||..-+++...+.+--.|..+++....-.+....-+.+...|++...++-+.. .|.=.|.++.... ..+   
T Consensus        66 dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~  144 (353)
T COG4257          66 DVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLE  144 (353)
T ss_pred             ccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecccc
Confidence            34556677776777666666666766666544333444555778888888766654433 4444455443321 111   


Q ss_pred             --cCCCeEEEEeeCCCEEEEEe
Q 045566           79 --QLPDRCYALTVRYPLMVVGT   98 (112)
Q Consensus        79 --~~~~~~~~~~~~~~~~~~~~   98 (112)
                        ........|++.|..-+++.
T Consensus       145 ~a~~nlet~vfD~~G~lWFt~q  166 (353)
T COG4257         145 HADANLETAVFDPWGNLWFTGQ  166 (353)
T ss_pred             cCCCcccceeeCCCccEEEeec
Confidence              12335567777777666654

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=82.52  E-value=9.5  Score=23.82  Aligned_cols=95  Identities=9%  Similarity=-0.071  Sum_probs=49.8

Q ss_pred             eeEEEcCCCCEEEEEc-----------CCC-cEEEEEcCCC--CC--cEEEeeccCCeeEEEEccCCCEEEEeeCCCcEE
Q 045566            2 LCSTWKDDGTTVFSGG-----------CDK-QVKMWPLLSG--GQ--PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLK   65 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~-----------~~~-~v~~~~~~~~--~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~   65 (112)
                      ..++|.++|+.+++..           ..+ .|.+++-..+  +.  ...+.......+.+++.+++ .+++ ......+
T Consensus        17 ~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~~i~~   94 (367)
T TIGR02604        17 IAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPPDILF   94 (367)
T ss_pred             ceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCCeEEE
Confidence            4689999999887753           223 6766654332  21  12333333445788888888 5443 3343333


Q ss_pred             EeeCCCC-----C--ceE-EecC-------CCeEEEEeeCCCEEEEEe
Q 045566           66 YWDTRQP-----N--PVH-TQQL-------PDRCYALTVRYPLMVVGT   98 (112)
Q Consensus        66 ~w~~~~~-----~--~~~-~~~~-------~~~~~~~~~~~~~~~~~~   98 (112)
                      +.|....     +  .+. .+..       ....+.+.|++.+.++-+
T Consensus        95 ~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        95 LRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             EeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            4344221     1  111 1211       124577888887655544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PRK10115 protease 2; Provisional

Probab=81.95  E-value=14  Score=25.42  Aligned_cols=70  Identities=7%  Similarity=0.064  Sum_probs=42.5

Q ss_pred             CeeEEEEccCCCEEEEee-----CCCcEEEeeCCCCCceEEe-cCCCeEEEEeeCCCEEEEEeCC------CcEEEEECc
Q 045566           42 PIKEVAWIPEMNLLATGS-----WDKTLKYWDTRQPNPVHTQ-QLPDRCYALTVRYPLMVVGTAD------RNLVVFNLQ  109 (112)
Q Consensus        42 ~v~~~~~~~~~~~~~~~~-----~~~~i~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d------~~v~~~d~~  109 (112)
                      .+..+.++|++++++.+.     ....+++.|+.++..+... ......+.|.++++.++....+      ..|+.+++.
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lg  207 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIG  207 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECC
Confidence            356778899999887542     2344778888776533222 1112457888888766554432      346666766


Q ss_pred             CC
Q 045566          110 NP  111 (112)
Q Consensus       110 ~~  111 (112)
                      ++
T Consensus       208 t~  209 (686)
T PRK10115        208 TP  209 (686)
T ss_pred             CC
Confidence            54

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=81.11  E-value=13  Score=24.49  Aligned_cols=102  Identities=12%  Similarity=0.095  Sum_probs=57.4

Q ss_pred             CCCEEEEEcCCCcEEEE-EcCCCCC-----cEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceE--EecC
Q 045566            9 DGTTVFSGGCDKQVKMW-PLLSGGQ-----PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVH--TQQL   80 (112)
Q Consensus         9 ~~~~l~~~~~~~~v~~~-~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~--~~~~   80 (112)
                      .|..+.+++.||.|.-| |.+....     ++.++-...++..+.-..+.+-+++-..+|.+.++.....+.+.  ....
T Consensus       279 Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~  358 (733)
T COG4590         279 GGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQ  358 (733)
T ss_pred             CceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhc
Confidence            35567888899988776 4443222     11122122333333222244566667777777776554443321  1222


Q ss_pred             CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           81 PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      ......++|++.++++-. .|+++++.+++.
T Consensus       359 ~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr  388 (733)
T COG4590         359 APQLVAMSPNQAYLLSED-QGKIRLAQLENR  388 (733)
T ss_pred             CcceeeeCcccchheeec-CCceEEEEecCC
Confidence            445678899988887653 457888876654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	112
3mmy_A	368	Structural And Functional Analysis Of The Interacti		5e-30
2h9l_A	329	Wdr5delta23 Length = 329		1e-07
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-07
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-07
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-07
2g99_A	308	Structural Basis For The Specific Recognition Of Me		1e-07
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-07
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-07
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-07
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-07
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-07
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-07
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-07
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-07
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-07
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-07
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-07
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		2e-07
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		3e-07
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		4e-06
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		5e-05
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		7e-05
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		7e-05
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		7e-05
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		7e-05
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		7e-05
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		1e-04
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		1e-04
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		1e-04
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		1e-04
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		1e-04
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		1e-04
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-04
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		4e-04
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		5e-04
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		5e-04
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		5e-04
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		5e-04
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		5e-04
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		5e-04
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		5e-04
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		5e-04
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		6e-04
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		8e-04

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score =  125 bits (315), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 59/112 (52%), Positives = 75/112 (66%), Gaps = 3/112 (2%)
Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI--PEMNLLATG 58
           VL   W DDG+ VF+  CDK  KMW L S  Q + +A HDAP+K + WI  P  + + TG
Sbjct: 89  VLDVCWSDDGSKVFTASCDKTAKMWDL-SSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTG 147
Query: 59  SWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110
           SWDKTLK+WDTR  NP+   QLP+RCY   V YP+ VV TA+R L+V+ L+N
Sbjct: 148 SWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLEN 199

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 9   DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
           +G  + S   DK +K+W    G    T++ H   I +VAW  + NLL + S DKTLK WD
Sbjct: 51  NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 110
Query: 69  TRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 109
                 + T +       C     +  L+V G+ D ++ +++++
Sbjct: 111 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 154

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 9   DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
           +G  + S   DK +K+W    G    T++ H   I +VAW  + NLL + S DKTLK WD
Sbjct: 34  NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93
Query: 69  TRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 109
                 + T +       C     +  L+V G+ D ++ +++++
Sbjct: 94  VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 9   DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
           +G  + S   DK +K+W    G    T++ H   I +VAW  + NLL + S DKTLK WD
Sbjct: 33  NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 92
Query: 69  TRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 109
                 + T +       C     +  L+V G+ D ++ +++++
Sbjct: 93  VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 136

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 9   DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
           +G  + S   DK +K+W    G    T++ H   I +VAW  + NLL + S DKTLK WD
Sbjct: 34  NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93
Query: 69  TRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 109
                 + T +       C     +  L+V G+ D ++ +++++
Sbjct: 94  VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 9   DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
           +G  + S   DK +K+W    G    T++ H   I +VAW  + NLL + S DKTLK WD
Sbjct: 30  NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 89
Query: 69  TRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 109
                 + T +       C     +  L+V G+ D ++ +++++
Sbjct: 90  VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 133

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 9   DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
           +G  + S   DK +K+W    G    T++ H   I +VAW  + NLL + S DKTLK WD
Sbjct: 37  NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 69  TRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 109
                 + T +       C     +  L+V G+ D ++ +++++
Sbjct: 97  VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 9   DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
           +G  + S   DK +K+W    G    T++ H   I +VAW  + NLL + S DKTLK WD
Sbjct: 35  NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 94
Query: 69  TRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 109
                 + T +       C     +  L+V G+ D ++ +++++
Sbjct: 95  VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 138

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 9   DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
           +G  + S   DK +K+W    G    T++ H   I +VAW  + NLL + S DKTLK WD
Sbjct: 40  NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 99
Query: 69  TRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 109
                 + T +       C     +  L+V G+ D ++ +++++
Sbjct: 100 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 9   DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
           +G  + S   DK +K+W    G    T++ H   I +VAW  + NLL + S DKTLK WD
Sbjct: 37  NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 69  TRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 109
                 + T +       C     +  L+V G+ D ++ +++++
Sbjct: 97  VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 9   DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
           +G  + S   DK +K+W    G    T++ H   I +VAW  + NLL + S DKTLK WD
Sbjct: 39  NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 98
Query: 69  TRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 109
                 + T +       C     +  L+V G+ D ++ +++++
Sbjct: 99  VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 142

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 9   DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
           +G  + S   DK +K+W    G    T++ H   I +VAW  + NLL + S DKTLK WD
Sbjct: 37  NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 69  TRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 109
                 + T +       C     +  L+V G+ D ++ +++++
Sbjct: 97  VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 9   DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
           +G  + S   DK +K+W    G    T++ H   I +VAW  + NLL + S DKTLK WD
Sbjct: 40  NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 99
Query: 69  TRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 109
                 + T +       C     +  L+V G+ D ++ +++++
Sbjct: 100 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 9   DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
           +G  + S   DK +K+W    G    T++ H   I +VAW  + NLL + S DKTLK WD
Sbjct: 37  NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 69  TRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 109
                 + T +       C     +  L+V G+ D ++ +++++
Sbjct: 97  VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 9   DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
           +G  + S   DK +K+W    G    T++ H   I +VAW  + NLL + S DKTLK WD
Sbjct: 40  NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 99
Query: 69  TRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 109
                 + T +       C     +  L+V G+ D ++ +++++
Sbjct: 100 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 9   DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
           +G  + S   DK +K+W    G    T++ H   I +VAW  + NLL + S DKTLK WD
Sbjct: 56  NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 115
Query: 69  TRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 109
                 + T +       C     +  L+V G+ D ++ +++++
Sbjct: 116 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 159

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 9   DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
           +G  + S   DK +K+W    G    T++ H   I +VAW  + NLL + S DKTLK WD
Sbjct: 58  NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 117
Query: 69  TRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 109
                 + T +       C     +  L+V G+ D ++ +++++
Sbjct: 118 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 161

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 6   WKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP-EMNLLAT--GSWDK 62
           W+ DG  + SGG D  V++W   S     T   H+A +K VAW P + NLLAT  G+ DK
Sbjct: 225 WRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDK 284
Query: 63  TLKYWDTRQPNPVHT 77
            + +W+      V+T
Sbjct: 285 QIHFWNAATGARVNT 299

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 9   DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
           +G  + +   DK +K+W    G    T++ H   I +VAW  + NLL + S DKTLK WD
Sbjct: 37  NGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 69  TRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 109
                 + T +       C     +  L+V G+ D ++ +++++
Sbjct: 97  VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 8   DDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
           + G T  SGGCDK+  +W + SG        H++ +  V + P  +  A+GS D T + +
Sbjct: 208 ETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLY 267
Query: 68  DTR 70
           D R
Sbjct: 268 DLR 270

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 11/108 (10%)
Query: 10  GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEM--NLLATGSWDKTLKYW 67
           G  + SG  D  +K+W  ++G    T+  H   +    W  +M  N++ +GS D+TLK W
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMRDNIIISGSTDRTLKVW 184
Query: 68  DTRQPNPVHT---QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112
           +      +HT        RC  L  +   +V G+ D  L V++++  Q
Sbjct: 185 NAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDIETGQ 230

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 31/69 (44%)
Query: 9   DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
           D     SG CD   K+W +  G    T   H++ I  + + P  N  ATGS D T + +D
Sbjct: 206 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 265
Query: 69  TRQPNPVHT 77
            R    + T
Sbjct: 266 LRADQELMT 274

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 31/69 (44%)
Query: 9   DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
           D     SG CD   K+W +  G    T   H++ I  + + P  N  ATGS D T + +D
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254
Query: 69  TRQPNPVHT 77
            R    + T
Sbjct: 255 LRADQELMT 263

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 31/69 (44%)
Query: 9   DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
           D     SG CD   K+W +  G    T   H++ I  + + P  N  ATGS D T + +D
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254
Query: 69  TRQPNPVHT 77
            R    + T
Sbjct: 255 LRADQELMT 263

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 31/69 (44%)
Query: 9   DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
           D     SG CD   K+W +  G    T   H++ I  + + P  N  ATGS D T + +D
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254
Query: 69  TRQPNPVHT 77
            R    + T
Sbjct: 255 LRADQELMT 263

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 31/69 (44%)
Query: 9   DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
           D     SG CD   K+W +  G    T   H++ I  + + P  N  ATGS D T + +D
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254
Query: 69  TRQPNPVHT 77
            R    + T
Sbjct: 255 LRADQELMT 263

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 6/108 (5%)
Query: 9   DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
           DG    SG  D  +++W L +G        H   +  VA+  +   + +GS DKT+K W+
Sbjct: 74  DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 133
Query: 69  TRQPNPVHTQQLPDRCYALTVRY------PLMVVGTADRNLVVFNLQN 110
           T        Q      +   VR+      P++V    D+ + V+NL N
Sbjct: 134 TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 181

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 6/108 (5%)
Query: 9   DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
           DG    SG  D  +++W L +G        H   +  VA+  +   + +GS DKT+K W+
Sbjct: 97  DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 156
Query: 69  TRQPNPVHTQQLPDRCYALTVRY------PLMVVGTADRNLVVFNLQN 110
           T        Q      +   VR+      P++V    D+ + V+NL N
Sbjct: 157 TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 204

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 6   WKDDGTTVFSGGCDKQVKMWPLLSGGQ---PV-TVAMHDAPIKEVAWIP-EMNLLAT--G 58
           W  DG  + SGG D  V +WP   G     P+ T   H   +K VAW P + N+LAT  G
Sbjct: 249 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 308
Query: 59  SWDKTLKYWD 68
           + D+ ++ W+
Sbjct: 309 TSDRHIRIWN 318

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 6   WKDDGTTVFSGGCDKQVKMWPLLSGGQ---PV-TVAMHDAPIKEVAWIP-EMNLLAT--G 58
           W  DG  + SGG D  V +WP   G     P+ T   H   +K VAW P + N+LAT  G
Sbjct: 238 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 297
Query: 59  SWDKTLKYWD 68
           + D+ ++ W+
Sbjct: 298 TSDRHIRIWN 307

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 10  GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 69
           G  + S   D Q+K+W +  G  P T+  H A + ++A I     + + S D T++ W+ 
Sbjct: 148 GEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWEC 207
Query: 70  RQPNPVHT 77
                +HT
Sbjct: 208 GTGTTIHT 215

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 10  GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 69
           G  + S   D Q+K+W +  G  P T+  H A + ++A I     + + S D T++ W+ 
Sbjct: 151 GEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWEC 210
Query: 70  RQPNPVHT 77
                +HT
Sbjct: 211 GTGTTIHT 218

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 9   DGTTVFSGGCDKQVKMWPLLSGGQPV-TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
           DG T+ S   DK VK+W     GQ + T+  H + ++ VA+ P+   +A+ S DKT+K W
Sbjct: 68  DGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 125
Query: 68  D 68
           +
Sbjct: 126 N 126

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 6   WKDDGTTVFSGGCDKQVKMWPLLSGGQ---PV-TVAMHDAPIKEVAWIP-EMNLLAT--G 58
           W  DG  + SGG D  V +WP   G     P+ T   H   +K VAW P + N+LAT  G
Sbjct: 158 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 217
Query: 59  SWDKTLKYWD 68
           + D+ ++ W+
Sbjct: 218 TSDRHIRIWN 227

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 6/108 (5%)
Query: 8   DDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
           DD  T+ S G DK VK W L           H++ I  +   P+  L+A+   D  +  W
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 68  DTRQPNPVHTQQLPDRCYALTV---RYPLMVVGTADRNLVVFNLQNPQ 112
           +      ++T    D  ++L     RY L         + VF+L +PQ
Sbjct: 224 NLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT--GIKVFSL-DPQ 268

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 6/108 (5%)
Query: 8   DDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
           DD  T+ S G DK VK W L           H++ I  +   P+  L+A+   D  +  W
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 68  DTRQPNPVHTQQLPDRCYALTV---RYPLMVVGTADRNLVVFNLQNPQ 112
           +      ++T    D  ++L     RY L         + VF+L +PQ
Sbjct: 224 NLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT--GIKVFSL-DPQ 268

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 34/80 (42%)
Query: 8   DDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
           DD  T+ S G DK VK W L           H++ I  +   P+  L+A+   D  +  W
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 68  DTRQPNPVHTQQLPDRCYAL 87
           +      ++T    D  ++L
Sbjct: 224 NLAAKKAMYTLSAQDEVFSL 243

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 6/108 (5%)
Query: 8   DDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
           DD  T+ S G DK VK W L           H++ I  +   P+  L+A+   D  +  W
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 68  DTRQPNPVHTQQLPDRCYALTV---RYPLMVVGTADRNLVVFNLQNPQ 112
           +      ++T    D  ++L     RY L         + VF+L +PQ
Sbjct: 224 NLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT--GIKVFSL-DPQ 268

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 36/73 (49%)
Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
           +L   +  DG  + SG  D  + ++ + +G    T+  H  PI+ + + P+  LL T S 
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 61  DKTLKYWDTRQPN 73
           D  +K +D +  N
Sbjct: 227 DGYIKIYDVQHAN 239

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMN--LLATG 58
           VLC  +  D + + +   DK+VK+W   +G    T   H   +    +  + N  LLATG
Sbjct: 660 VLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATG 719
Query: 59  SWDKTLKYWDTRQ 71
           S D  LK WD  Q
Sbjct: 720 SNDFFLKLWDLNQ 732

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMN--LLATG 58
           VLC  +  D + + +   DK+VK+W   +G    T   H   +    +  + N  LLATG
Sbjct: 667 VLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATG 726
Query: 59  SWDKTLKYWDTRQ 71
           S D  LK WD  Q
Sbjct: 727 SNDFFLKLWDLNQ 739

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 6/108 (5%)
Query: 8   DDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
           DD  T+ S G DK VK W L           H++ I  +   P+  L+A+   D  +  W
Sbjct: 158 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 217
Query: 68  DTRQPNPVHTQQLPDRCYALTV---RYPLMVVGTADRNLVVFNLQNPQ 112
           +      ++T    D  ++L     RY L         + VF+L +PQ
Sbjct: 218 NLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT--GIKVFSL-DPQ 262

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 6/108 (5%)
Query: 8   DDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
           DD  T+ S G DK VK W L           H++ I  +   P+  L+A+   D  +  W
Sbjct: 164 DDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLW 223
Query: 68  DTRQPNPVHTQQLPDRCYALTV---RYPLMVVGTADRNLVVFNLQNPQ 112
           +       +T    D  ++L     RY L         + VF+L +PQ
Sbjct: 224 NLAAKKAXYTLSAQDEVFSLAFSPNRYWLAAATAT--GIKVFSL-DPQ 268

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 14/113 (12%)
Query: 10  GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWD 68
           G  + SG  D+ V++W L +G   +T+++ D  +  VA  P +   +A GS D+ ++ WD
Sbjct: 177 GDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWD 235
Query: 69  TR---------QPNPVHTQQLPDRCYAL--TVRYPLMVVGTADRNLVVFNLQN 110
           +            N   T    D  Y++  T     +V G+ DR++ ++NLQN
Sbjct: 236 SETGFLVERLDSENESGTGH-KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	112
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.96
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.96
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.95
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.95
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.95
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.95
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.95
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.95
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.94
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.94
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.94
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.94
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.94
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.94
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.94
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.94
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.94
2pm7_B	297	Protein transport protein SEC13, protein transport	99.93
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.93
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.93
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.93
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.93
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.93
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.93
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.93
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.93
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.93
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.93
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.93
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.93
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.93
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.92
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.92
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.92
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.92
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.92
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.92
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.92
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.92
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.92
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.92
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.92
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.92
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.92
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.92
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.92
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.92
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.92
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.91
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.91
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.91
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.91
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.91
2pm7_B	297	Protein transport protein SEC13, protein transport	99.91
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.91
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.91
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.91
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.91
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.91
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.91
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.91
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.91
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.91
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.9
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.9
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.9
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.9
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.9
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.9
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.9
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.9
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.9
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.9
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.9
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.9
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.89
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.89
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.89
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.89
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.89
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.89
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.89
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.89
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.89
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.89
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.89
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.89
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.89
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.89
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.89
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.89
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.89
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.88
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.88
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.88
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.88
3jro_A	753	Fusion protein of protein transport protein SEC13	99.88
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.88
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.88
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.88
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.88
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.88
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.88
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.88
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.88
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.87
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.87
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.87
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.87
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.87
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.87
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.87
3jro_A	753	Fusion protein of protein transport protein SEC13	99.86
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.86
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.86
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.85
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.84
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.84
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.83
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.83
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.83
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.83
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.81
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.8
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.8
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.78
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.77
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.74
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.69
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.69
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.68
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.66
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.65
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.65
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.64
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.64
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.62
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.62
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.62
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.61
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.61
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.61
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.6
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.59
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.59
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.59
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.59
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.58
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.57
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.57
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.56
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.56
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.55
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.55
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.55
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.54
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.52
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.51
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.5
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.45
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.43
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.42
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.42
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.4
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.37
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.36
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.36
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.35
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.35
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.31
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.3
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.29
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.28
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.27
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.25
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.24
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.23
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.23
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.2
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.18
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.18
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.18
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.17
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.16
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.15
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.15
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.15
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.14
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.11
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.11
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.11
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.1
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.1
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.06
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.04
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.02
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.01
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.0
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.99
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.98
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.97
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.96
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.94
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.93
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.92
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.9
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.88
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.87
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.86
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.86
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.85
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.83
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.82
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.8
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.74
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.73
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.7
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.7
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.69
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.69
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.65
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.63
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.58
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.56
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.55
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.51
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.49
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.43
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.43
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.41
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.41
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.39
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.36
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.35
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.3
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.28
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.25
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.24
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.21
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.19
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.09
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.05
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.98
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.96
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.96
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.96
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.93
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.91
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.89
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.87
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.86
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.83
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.82
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.79
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.76
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.71
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.68
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.65
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.56
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.54
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.48
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.48
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.41
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.38
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.34
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.25
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.22
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.04
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	96.92
4a2l_A	795	BT_4663, two-component system sensor histidine kin	96.91
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.82
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.81
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.71
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	96.56
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.53
4a2l_A	795	BT_4663, two-component system sensor histidine kin	96.51
3v65_B	386	Low-density lipoprotein receptor-related protein;	96.4
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.33
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.16
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	96.16
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.05
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	95.98
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	95.96
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	95.71
3kya_A	496	Putative phosphatase; structural genomics, joint c	95.64
3v65_B	386	Low-density lipoprotein receptor-related protein;	95.61
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	95.59
3v9f_A	781	Two-component system sensor histidine kinase/RESP	95.21
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	95.07
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	94.99
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	94.98
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	94.98
3v9f_A	781	Two-component system sensor histidine kinase/RESP	94.94
2p4o_A	306	Hypothetical protein; putative lactonase, structur	94.91
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	94.87
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	94.62
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	94.55
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	94.48
3kya_A	496	Putative phosphatase; structural genomics, joint c	94.36
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	94.34
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	94.3
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	93.71
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.67
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	93.56
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	93.32
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	93.17
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	93.11
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	92.89
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	92.66
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	92.62
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	92.25
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	92.11
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	92.06
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	91.92
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	91.66
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	91.6
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	91.5
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	91.42
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	91.39
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	90.93
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	90.46
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	90.26
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	90.14
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	90.07
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	89.51
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	89.43
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	89.36
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	89.21
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	88.96
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	88.75
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	88.69
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	88.61
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	88.2
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	87.78
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	86.37
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	86.21
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	85.62
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	85.61
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	84.95
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	84.51

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.96  E-value=3.4e-27  Score=135.84  Aligned_cols=111  Identities=16%  Similarity=0.256  Sum_probs=102.2

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |.+++|+|+++++++++.|+.|++||+.+++.+..+..|..++.+++|+|+++++++++.|+.|++||+++++.+..+..
T Consensus        16 V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~   95 (304)
T 2ynn_A           16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA   95 (304)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             eEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeC
Confidence            57899999999999999999999999998888888889999999999999999999999999999999999988766654


Q ss_pred             ---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           81 ---PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        81 ---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                         .+..++|+|+++++++++.|+.|++||++++
T Consensus        96 h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~  129 (304)
T 2ynn_A           96 HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN  129 (304)
T ss_dssp             CSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGT
T ss_pred             CCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCC
Confidence               4578999999999999999999999998764

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.96  E-value=5.7e-27  Score=135.88  Aligned_cols=111  Identities=23%  Similarity=0.324  Sum_probs=101.7

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |.+++|+|++++|++|+.|+.|++||+.+++.+..+..|..+|.+++|+|+++++++++.|+.|++||+++.+....+..
T Consensus       167 v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  246 (321)
T 3ow8_A          167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG  246 (321)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECC
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcC
Confidence            46889999999999999999999999999988888999999999999999999999999999999999998887766654


Q ss_pred             ---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           81 ---PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        81 ---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                         .+..++|+|++.++++++.|+.|++||++++
T Consensus       247 h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~  280 (321)
T 3ow8_A          247 HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR  280 (321)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Confidence               3568899999999999999999999999875

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.95  E-value=1.1e-26  Score=138.37  Aligned_cols=112  Identities=19%  Similarity=0.252  Sum_probs=102.9

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |++++|+|+++++++|+.|+.|++||+.+++....+.+|...|.+++|+|++.++++|+.|+.|++||+.+.+.+..+..
T Consensus       111 V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~  190 (410)
T 1vyh_C          111 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHG  190 (410)
T ss_dssp             EEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCC
T ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999998887766543


Q ss_pred             ---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           81 ---PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        81 ---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                         .+.+++|+|++.++++++.|+.|++||+++++
T Consensus       191 h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~  225 (410)
T 1vyh_C          191 HDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY  225 (410)
T ss_dssp             CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC
T ss_pred             CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence               45788999999999999999999999998763

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.95  E-value=4.6e-26  Score=132.11  Aligned_cols=109  Identities=18%  Similarity=0.226  Sum_probs=100.4

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |.+++|+|++++|++++.|+.|++||++..+....+.+|...|.+++|+|++.++++++.|+.|++||+++.+++..+..
T Consensus       209 v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~  288 (321)
T 3ow8_A          209 IRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFD  288 (321)
T ss_dssp             CCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             eeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcC
Confidence            57899999999999999999999999998888888999999999999999999999999999999999999888777644


Q ss_pred             ---CCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           81 ---PDRCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        81 ---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                         .+..++|++++..+++++.|+.|++||..
T Consensus       289 h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          289 HQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             CCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence               45788999999999999999999999964

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.95  E-value=4.6e-26  Score=132.79  Aligned_cols=111  Identities=25%  Similarity=0.365  Sum_probs=101.1

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |.+++|+|+++++++|+.|+.|++||++++.....+..|...|.+++|+|++.++++++.|+.|++||+++.+.+..+..
T Consensus       187 v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~  266 (340)
T 1got_B          187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH  266 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEcc
Confidence            46899999999999999999999999999988888999999999999999999999999999999999998877665543


Q ss_pred             -----CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           81 -----PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        81 -----~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                           .+..++|+|++.++++++.|+.|++||++++
T Consensus       267 ~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~  302 (340)
T 1got_B          267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA  302 (340)
T ss_dssp             TTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             CCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC
Confidence                 3467899999999999999999999998765

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.95  E-value=6.6e-26  Score=132.61  Aligned_cols=112  Identities=22%  Similarity=0.306  Sum_probs=97.2

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCC-CEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEM-NLLATGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      |.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|++++ ..+++++.|+.|++||+++++....+.
T Consensus       130 V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~  209 (344)
T 4gqb_B          130 VSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIG  209 (344)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeee
Confidence            5789999999999999999999999999999999999999999999999976 578999999999999999988776653


Q ss_pred             C-----CCeEEEEeeC-CCEEEEEeCCCcEEEEECcCCC
Q 045566           80 L-----PDRCYALTVR-YPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        80 ~-----~~~~~~~~~~-~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      .     ....++|+|+ +.++++++.|+.|++||+++++
T Consensus       210 ~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~  248 (344)
T 4gqb_B          210 CSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS  248 (344)
T ss_dssp             ----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--
T ss_pred             cceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc
Confidence            2     2457888885 5678899999999999998764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.95  E-value=1.6e-25  Score=128.88  Aligned_cols=112  Identities=28%  Similarity=0.448  Sum_probs=102.2

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |.+++|+|++++|++++.|+.+++|+..+++....+..|...|.+++|+|+++++++++.|+.|++||+++.+.+..+..
T Consensus        26 v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~  105 (312)
T 4ery_A           26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG  105 (312)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             EEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcC
Confidence            57899999999999999999999999998888888889999999999999999999999999999999999887766654


Q ss_pred             ---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           81 ---PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        81 ---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                         .+..+.|+|+++++++++.|+.|++||+++++
T Consensus       106 ~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  140 (312)
T 4ery_A          106 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK  140 (312)
T ss_dssp             CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE
Confidence               35678899999999999999999999998763

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.95  E-value=1.6e-25  Score=131.00  Aligned_cols=111  Identities=18%  Similarity=0.320  Sum_probs=96.0

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEE----eeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceE
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTV----AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVH   76 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~   76 (112)
                      |.+++|+|++ .+++|+.|+.|++||+.+++.....    .+|...|++++|+|+++++++++.|+.|++||+++++.+.
T Consensus        85 v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~  163 (344)
T 4gqb_B           85 VADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLS  163 (344)
T ss_dssp             EEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            4689999985 6779999999999999988776533    4789999999999999999999999999999999998887


Q ss_pred             EecC---CCeEEEEeeCCC-EEEEEeCCCcEEEEECcCCC
Q 045566           77 TQQL---PDRCYALTVRYP-LMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        77 ~~~~---~~~~~~~~~~~~-~~~~~~~d~~v~~~d~~~~~  112 (112)
                      .+..   .+..++|++++. .+++++.|+.|++||+++++
T Consensus       164 ~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~  203 (344)
T 4gqb_B          164 SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK  203 (344)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS
T ss_pred             EEcCcCCceEEEEecCCCCCceeeeccccccccccccccc
Confidence            7654   456788998875 78899999999999998764

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.94  E-value=3.9e-26  Score=131.40  Aligned_cols=111  Identities=21%  Similarity=0.293  Sum_probs=98.1

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCce-EEec
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV-HTQQ   79 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~-~~~~   79 (112)
                      |.+++|+|+++++++|+.|+.|++||+.+++.+..+..|...|.+++|+|+++++++++.|+.|++||+++...+ ..+.
T Consensus        58 v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~  137 (304)
T 2ynn_A           58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE  137 (304)
T ss_dssp             EEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC
T ss_pred             EEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhc
Confidence            467899999999999999999999999999999999999999999999999999999999999999999877443 3333


Q ss_pred             ---CCCeEEEEee-CCCEEEEEeCCCcEEEEECcCC
Q 045566           80 ---LPDRCYALTV-RYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        80 ---~~~~~~~~~~-~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                         ..+.+++|+| ++..+++++.|+.|++||++++
T Consensus       138 ~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~  173 (304)
T 2ynn_A          138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS  173 (304)
T ss_dssp             CCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCS
T ss_pred             ccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCC
Confidence               3457889998 5789999999999999998764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.94  E-value=4.3e-25  Score=127.15  Aligned_cols=112  Identities=22%  Similarity=0.380  Sum_probs=102.5

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |.+++|+|++++|++++.|+.|++||+.+++....+..|...+.++.|+|++.++++++.|+.|++||+++.+.+..+..
T Consensus        68 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  147 (312)
T 4ery_A           68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA  147 (312)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             eEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecC
Confidence            46899999999999999999999999999998888999999999999999999999999999999999999887776654


Q ss_pred             ---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           81 ---PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        81 ---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                         ++..+.|++++.++++++.|+.|++||+++++
T Consensus       148 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~  182 (312)
T 4ery_A          148 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ  182 (312)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence               45778899999999999999999999998753

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.94  E-value=2.8e-25  Score=131.67  Aligned_cols=111  Identities=20%  Similarity=0.367  Sum_probs=99.9

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |.+++|+|++++|++|+.|+.|++||+.+++....+.+|...|.+++|+|++..+++++.|+.|++||+++++....+..
T Consensus       126 v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~  205 (393)
T 1erj_A          126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI  205 (393)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEc
Confidence            35899999999999999999999999998888888899999999999999999999999999999999998877655543


Q ss_pred             --CCeEEEEee-CCCEEEEEeCCCcEEEEECcCC
Q 045566           81 --PDRCYALTV-RYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        81 --~~~~~~~~~-~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                        ....++++| ++.++++++.|+.|++||++++
T Consensus       206 ~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~  239 (393)
T 1erj_A          206 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG  239 (393)
T ss_dssp             SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTC
T ss_pred             CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence              456788888 8899999999999999998865

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.94  E-value=1.5e-25  Score=133.48  Aligned_cols=111  Identities=21%  Similarity=0.252  Sum_probs=101.5

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |.+++|+|++++|++|+.|+.|++||+.+.+.+..+.+|...|.+++|+|++.++++++.|+.|++||++++.++..+..
T Consensus       153 V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~  232 (410)
T 1vyh_C          153 VQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG  232 (410)
T ss_dssp             EEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeC
Confidence            57899999999999999999999999998888888889999999999999999999999999999999999988776654


Q ss_pred             ---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           81 ---PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        81 ---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                         .+..+.+++++.++++++.|+.|++||++++
T Consensus       233 h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~  266 (410)
T 1vyh_C          233 HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK  266 (410)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             CCccEEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence               3467888999999999999999999999875

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.94  E-value=1e-24  Score=127.86  Aligned_cols=111  Identities=16%  Similarity=0.267  Sum_probs=100.6

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEcc--CCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP--EMNLLATGSWDKTLKYWDTRQPNPVHTQ   78 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~i~~w~~~~~~~~~~~   78 (112)
                      |.+++|+|++..+++++.|+.|++||+.+++.+..+.+|...+.+++++|  ++..+++++.|+.|++||+++++.+..+
T Consensus       157 v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~  236 (354)
T 2pbi_B          157 LSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF  236 (354)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             EEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence            45789999999999999999999999999999889999999999999988  5689999999999999999999887766


Q ss_pred             cC---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           79 QL---PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        79 ~~---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      ..   .+..++|+|++..+++++.|+.|++||++++
T Consensus       237 ~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~  272 (354)
T 2pbi_B          237 ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD  272 (354)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence            54   4578899999999999999999999999864

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.94  E-value=2.8e-25  Score=131.87  Aligned_cols=112  Identities=20%  Similarity=0.342  Sum_probs=99.7

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |.+++|+|++++|++++.|+.|++||+.+++....+..|...|.+++|+|++..+++++.|+.|++||+++++.+..+..
T Consensus       142 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~  221 (420)
T 3vl1_A          142 ITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNR  221 (420)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECB
T ss_pred             cEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeec
Confidence            57899999999999999999999999999999999999999999999999999999999999999999998887766542


Q ss_pred             ---------------------------CCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           81 ---------------------------PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        81 ---------------------------~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                                                 ....++|+|+++++++++.|+.|++||+++++
T Consensus       222 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~  280 (420)
T 3vl1_A          222 KENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE  280 (420)
T ss_dssp             TTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC
T ss_pred             CCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc
Confidence                                       22345567889999999999999999998763

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.94  E-value=1.1e-24  Score=128.67  Aligned_cols=111  Identities=19%  Similarity=0.246  Sum_probs=96.3

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeecc-------CCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHD-------APIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN   73 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~   73 (112)
                      |.+++|+|++++|++|+.|+.|++||+++++.+..+..+.       ..+.+++|+|++.++++|+.|+.|++||....+
T Consensus       252 v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~  331 (380)
T 3iz6_a          252 INSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAE  331 (380)
T ss_dssp             CCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCC
T ss_pred             eEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCc
Confidence            5789999999999999999999999999887776664332       248999999999999999999999999998887


Q ss_pred             ceEEe-------cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           74 PVHTQ-------QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        74 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      .+..+       ...+.+++|+|++.++++|+.|+.|++|++...
T Consensus       332 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~  376 (380)
T 3iz6_a          332 MVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH  376 (380)
T ss_dssp             EEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred             eEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence            66544       334678999999999999999999999998764

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.94  E-value=1.1e-24  Score=128.66  Aligned_cols=111  Identities=23%  Similarity=0.358  Sum_probs=97.5

Q ss_pred             CeeEEEcC-CCCEEEEEcCCCcEEEEEcCC-CCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566            1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLS-GGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ   78 (112)
Q Consensus         1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~   78 (112)
                      |.+++|++ +++.+++|+.|+.|++||++. .+....+.+|...|.+++|+|++.++++++.|+.|++||+++++.+..+
T Consensus       208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~  287 (380)
T 3iz6_a          208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVY  287 (380)
T ss_dssp             EEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEE
T ss_pred             eEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEe
Confidence            35678877 889999999999999999974 4667788899999999999999999999999999999999998777655


Q ss_pred             cC----------CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           79 QL----------PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        79 ~~----------~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      ..          .+..++|+|+++++++++.|+.|++||+.++
T Consensus       288 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~  330 (380)
T 3iz6_a          288 NREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA  330 (380)
T ss_dssp             CCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC
T ss_pred             cccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC
Confidence            33          1468999999999999999999999998765

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.94  E-value=5.9e-25  Score=127.75  Aligned_cols=111  Identities=18%  Similarity=0.318  Sum_probs=88.3

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCC-------CCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCC-
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSG-------GQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP-   72 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~-   72 (112)
                      |.+++|+|++++|++++.|+.|++|+....       +....+.+|...|.+++|+|+++++++++.|+.|++||++.. 
T Consensus        61 v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~  140 (330)
T 2hes_X           61 IRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESG  140 (330)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTC
T ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCC
Confidence            568999999999999999999999998532       234567789999999999999999999999999999999533 


Q ss_pred             ---CceEEe---cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           73 ---NPVHTQ---QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        73 ---~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                         +.+..+   ...+..+.|+|++.++++++.|+.|++||.+++
T Consensus       141 ~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~  185 (330)
T 2hes_X          141 EEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDD  185 (330)
T ss_dssp             CCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETT
T ss_pred             CCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence               233333   334678899999999999999999999997653

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.93  E-value=1.4e-24  Score=124.58  Aligned_cols=111  Identities=16%  Similarity=0.292  Sum_probs=95.1

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCC--CCcEEEeeccCCeeEEEEcc--CCCEEEEeeCCCcEEEeeCCCCC--c
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSG--GQPVTVAMHDAPIKEVAWIP--EMNLLATGSWDKTLKYWDTRQPN--P   74 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~i~~w~~~~~~--~   74 (112)
                      |.+++|+|+|++|++|+.|+.|++|++...  +...++.+|...|.+++|++  ++.++++++.|+.|++||+++++  .
T Consensus        12 V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~   91 (297)
T 2pm7_B           12 IHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQ   91 (297)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCC
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEE
Confidence            578999999999999999999999998643  56778899999999999976  48999999999999999998763  3


Q ss_pred             eEEe---cCCCeEEEEeeC--CCEEEEEeCCCcEEEEECcCC
Q 045566           75 VHTQ---QLPDRCYALTVR--YPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        75 ~~~~---~~~~~~~~~~~~--~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      +..+   ...+..++|+|+  +.++++++.|+.|++||++++
T Consensus        92 ~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~  133 (297)
T 2pm7_B           92 IAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKEN  133 (297)
T ss_dssp             CEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSS
T ss_pred             EEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCC
Confidence            3333   345678899987  789999999999999998764

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.93  E-value=9e-25  Score=128.22  Aligned_cols=110  Identities=17%  Similarity=0.110  Sum_probs=96.1

Q ss_pred             CeeEEEcCC-CCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCC-CEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566            1 VLCSTWKDD-GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEM-NLLATGSWDKTLKYWDTRQPNPVHTQ   78 (112)
Q Consensus         1 v~~~~~~~~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~i~~w~~~~~~~~~~~   78 (112)
                      +.+++|+|+ +.++++|+.|+.|++||+++++....+..|...|++++|+|++ .++++++.|+.|++||+++++.+...
T Consensus       229 v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~  308 (357)
T 4g56_B          229 PTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL  308 (357)
T ss_dssp             EEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred             ccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC
Confidence            368999996 5688999999999999999999999999999999999999976 57899999999999999988776554


Q ss_pred             c--CCCeEEEEee-CCCEEEEEeCCCcEEEEECcC
Q 045566           79 Q--LPDRCYALTV-RYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        79 ~--~~~~~~~~~~-~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      .  ..+..++|+| ++.+|++++.|+.|++||+.+
T Consensus       309 ~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~  343 (357)
T 4g56_B          309 SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS  343 (357)
T ss_dssp             CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred             CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence            3  3567889998 788999999999999999865

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.93  E-value=1.2e-24  Score=126.90  Aligned_cols=110  Identities=20%  Similarity=0.380  Sum_probs=98.4

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |.++.|++++. +++++.|+.|++||+.+++....+.+|...|.+++|+|++.++++++.|+.|++||+++.+.+..+..
T Consensus       146 v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~  224 (340)
T 1got_B          146 LSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG  224 (340)
T ss_dssp             EEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECC
T ss_pred             EEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcC
Confidence            35778887765 88899999999999999988888999999999999999999999999999999999999887776654


Q ss_pred             ---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           81 ---PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        81 ---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                         .+..++|+|++.++++++.|+.|++||++++
T Consensus       225 h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~  258 (340)
T 1got_B          225 HESDINAICFFPNGNAFATGSDDATCRLFDLRAD  258 (340)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             CcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Confidence               4578899999999999999999999999865

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.93  E-value=1.4e-24  Score=128.71  Aligned_cols=111  Identities=23%  Similarity=0.348  Sum_probs=99.6

Q ss_pred             CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCC-------CCcEEEeeccCCeeEEEEccCC-CEEEEeeCCCcEEEeeCCC
Q 045566            1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSG-------GQPVTVAMHDAPIKEVAWIPEM-NLLATGSWDKTLKYWDTRQ   71 (112)
Q Consensus         1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~i~~w~~~~   71 (112)
                      |.+++|+| ++++|++|+.|+.|++|++.++       +....+..|...|.+++|+|++ ..+++++.|+.|++||+++
T Consensus        84 V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~  163 (402)
T 2aq5_A           84 VLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT  163 (402)
T ss_dssp             EEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTT
T ss_pred             EEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCC
Confidence            57899999 9999999999999999999887       5677888999999999999987 6999999999999999999


Q ss_pred             CCceEEe--c---CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           72 PNPVHTQ--Q---LPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        72 ~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      ++.+..+  .   ..+..++|+|++..+++++.|+.|++||++++
T Consensus       164 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  208 (402)
T 2aq5_A          164 GAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG  208 (402)
T ss_dssp             TEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTT
T ss_pred             CCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCC
Confidence            8877766  2   24578899999999999999999999999875

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.93  E-value=4.1e-25  Score=129.07  Aligned_cols=111  Identities=23%  Similarity=0.386  Sum_probs=93.8

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcE---EEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC--ce
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV---TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN--PV   75 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~--~~   75 (112)
                      |.+++|+|++++|++|+.|+.|++|++..+....   ...+|...|.+++|+|+++++++++.|+.+++|+.....  .+
T Consensus        19 v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~   98 (345)
T 3fm0_A           19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECV   98 (345)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEE
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEE
Confidence            4579999999999999999999999987665332   225789999999999999999999999999999987764  33


Q ss_pred             EEec---CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           76 HTQQ---LPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        76 ~~~~---~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      ..+.   ..+..++|+|+++++++++.|+.|++||++++
T Consensus        99 ~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~  137 (345)
T 3fm0_A           99 TTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEE  137 (345)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTT
T ss_pred             EEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCC
Confidence            4443   35678999999999999999999999998764

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.93  E-value=9.3e-25  Score=135.37  Aligned_cols=111  Identities=14%  Similarity=0.147  Sum_probs=99.3

Q ss_pred             CeeEEEcCCCC-EEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566            1 VLCSTWKDDGT-TVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         1 v~~~~~~~~~~-~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      |.+++|+|++. .|++++.|+.+++||..+.+....+.+|...|.+++|+|+++++++++.|+.|++||..+++.+..+.
T Consensus       150 v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~  229 (611)
T 1nr0_A          150 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFE  229 (611)
T ss_dssp             EEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECB
T ss_pred             ceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeec
Confidence            46899999987 69999999999999988877777888999999999999999999999999999999998887765542


Q ss_pred             ----------CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           80 ----------LPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        80 ----------~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                                ..+..++|+|+++++++++.|+.|++||++++
T Consensus       230 ~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~  271 (611)
T 1nr0_A          230 DDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL  271 (611)
T ss_dssp             CTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             cccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Confidence                      24568899999999999999999999999875

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.93  E-value=3.4e-24  Score=125.64  Aligned_cols=112  Identities=26%  Similarity=0.449  Sum_probs=98.6

Q ss_pred             CeeEEEcC--CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566            1 VLCSTWKD--DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ   78 (112)
Q Consensus         1 v~~~~~~~--~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~   78 (112)
                      |.+++|+|  +++.|++|+.|+.|++||+++++....+..|...|.+++|+|++..+++++.|+.|++||++..+.+..+
T Consensus       199 v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~  278 (354)
T 2pbi_B          199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIY  278 (354)
T ss_dssp             EEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             eEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            35778877  5789999999999999999999988889999999999999999999999999999999999987766554


Q ss_pred             cC-----CCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           79 QL-----PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        79 ~~-----~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      ..     ....+.|+|++.++++++.|+.|++||+++++
T Consensus       279 ~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~  317 (354)
T 2pbi_B          279 SKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS  317 (354)
T ss_dssp             CCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS
T ss_pred             cCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc
Confidence            32     34678899999999999999999999997753

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.93  E-value=1.6e-24  Score=134.31  Aligned_cols=111  Identities=17%  Similarity=0.290  Sum_probs=96.5

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe-------eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA-------MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN   73 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~   73 (112)
                      |.+++|+|++++|++++.|+.|++||..+++....+.       .|...|.+++|+|+++++++++.|+.|++||+++.+
T Consensus       193 V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~  272 (611)
T 1nr0_A          193 VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK  272 (611)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             eEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCc
Confidence            5689999999999999999999999998888777663       689999999999999999999999999999998765


Q ss_pred             ceEEe----------------------------------------------cCCCeEEEEeeCCCEEEEEeCCCcEEEEE
Q 045566           74 PVHTQ----------------------------------------------QLPDRCYALTVRYPLMVVGTADRNLVVFN  107 (112)
Q Consensus        74 ~~~~~----------------------------------------------~~~~~~~~~~~~~~~~~~~~~d~~v~~~d  107 (112)
                      .+..+                                              ...+..++|+|+++++++++.|+.|++||
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd  352 (611)
T 1nr0_A          273 VEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWD  352 (611)
T ss_dssp             EEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             eeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Confidence            43322                                              12346788999999999999999999999


Q ss_pred             CcCC
Q 045566          108 LQNP  111 (112)
Q Consensus       108 ~~~~  111 (112)
                      ++++
T Consensus       353 ~~~~  356 (611)
T 1nr0_A          353 ISTG  356 (611)
T ss_dssp             TTTC
T ss_pred             CCCC
Confidence            9865

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.93  E-value=7.3e-25  Score=128.01  Aligned_cols=111  Identities=23%  Similarity=0.340  Sum_probs=95.3

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCC--CcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCc---e
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG--QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP---V   75 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~---~   75 (112)
                      |.+++|+|++++|++|+.|+.+++|+.....  ....+.+|...|.+++|+|+++++++++.|+.|++||+++...   +
T Consensus        64 v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~  143 (345)
T 3fm0_A           64 VRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECV  143 (345)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEE
Confidence            5689999999999999999999999987664  3557788999999999999999999999999999999987643   2


Q ss_pred             EEe---cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           76 HTQ---QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        76 ~~~---~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      ..+   ...+..++|+|++.++++++.|+.|++||++++
T Consensus       144 ~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~  182 (345)
T 3fm0_A          144 SVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEED  182 (345)
T ss_dssp             EEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETT
T ss_pred             EEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCC
Confidence            233   334578899999999999999999999998754

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.93  E-value=9.8e-25  Score=128.43  Aligned_cols=110  Identities=12%  Similarity=0.056  Sum_probs=94.2

Q ss_pred             CeeEEEcCCCCEEEEEcCCC----cEEEEEcCCCCC----cEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCC
Q 045566            1 VLCSTWKDDGTTVFSGGCDK----QVKMWPLLSGGQ----PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP   72 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~----~v~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~   72 (112)
                      |.+++|+|+++.+++++.++    .+++|+......    ...+..|...|++++|+|+++++++|+.|+.|++||+++.
T Consensus       222 v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~  301 (365)
T 4h5i_A          222 LSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL  301 (365)
T ss_dssp             EEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT
T ss_pred             EEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC
Confidence            46799999999999998876    578888765543    2345678889999999999999999999999999999998


Q ss_pred             CceEEe-c---CCCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           73 NPVHTQ-Q---LPDRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        73 ~~~~~~-~---~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      +++..+ .   ..+..++|+|++++|++++.|++|+|||+..
T Consensus       302 ~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          302 SMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             EEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             cEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            887764 2   3467899999999999999999999999864

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.93  E-value=6e-24  Score=123.99  Aligned_cols=109  Identities=23%  Similarity=0.359  Sum_probs=95.4

Q ss_pred             CeeEEE-----cC-CCCEEEEEcCCCcEEEEEcCCCC-------CcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEe
Q 045566            1 VLCSTW-----KD-DGTTVFSGGCDKQVKMWPLLSGG-------QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW   67 (112)
Q Consensus         1 v~~~~~-----~~-~~~~l~~~~~~~~v~~~~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w   67 (112)
                      |.+++|     ++ ++++|++|+.|+.|++||+...+       +...+.+|...|.+++|+|++.++++++.|+.|++|
T Consensus        24 V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lw  103 (343)
T 2xzm_R           24 VTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLW  103 (343)
T ss_dssp             EEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEE
T ss_pred             hhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEE
Confidence            467888     66 89999999999999999987543       234567899999999999999999999999999999


Q ss_pred             eCCCCCceEEecC---CCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           68 DTRQPNPVHTQQL---PDRCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        68 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                      |+++++.+..+..   .+..++|+|+++++++++.|+.|++||++
T Consensus       104 d~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~  148 (343)
T 2xzm_R          104 DLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL  148 (343)
T ss_dssp             ETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS
T ss_pred             ECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc
Confidence            9999887766543   46789999999999999999999999985

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.93  E-value=6e-24  Score=130.34  Aligned_cols=108  Identities=26%  Similarity=0.364  Sum_probs=96.2

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |++++|+|+|++|++|+.|+.|++||. +++.+.++.+|...|.+++|+|+++++++++.|+.|++||. +++.+..+..
T Consensus        19 V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~-~~~~~~~~~~   96 (577)
T 2ymu_A           19 VRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG   96 (577)
T ss_dssp             EEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECC
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEEC
Confidence            679999999999999999999999994 67788889999999999999999999999999999999996 4555655543


Q ss_pred             ---CCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           81 ---PDRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        81 ---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                         .+..++|+|+++.+++++.|+.+++|+...
T Consensus        97 ~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~  129 (577)
T 2ymu_A           97 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG  129 (577)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred             CCCCEEEEEECCCCCEEEEEcCCCceeeccccc
Confidence               457899999999999999999999999654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.93  E-value=4.1e-24  Score=123.74  Aligned_cols=110  Identities=16%  Similarity=0.303  Sum_probs=95.7

Q ss_pred             CeeEEEcCCC-CEEEEEcCCCcEEEEEcCCCC-----CcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCc
Q 045566            1 VLCSTWKDDG-TTVFSGGCDKQVKMWPLLSGG-----QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP   74 (112)
Q Consensus         1 v~~~~~~~~~-~~l~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~   74 (112)
                      |.+++|+|++ ++|++|+.|+.|++|++....     +...+.+|...|.+++|+|++.++++++.|+.|++||+++++.
T Consensus        20 V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~   99 (319)
T 3frx_A           20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGET   99 (319)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             EEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCe
Confidence            5789999954 899999999999999986432     3456788999999999999999999999999999999999887


Q ss_pred             eEEecC---CCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           75 VHTQQL---PDRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        75 ~~~~~~---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      +..+..   .+..+.|++++..+++++.|+.|++||++.
T Consensus       100 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~  138 (319)
T 3frx_A          100 YQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG  138 (319)
T ss_dssp             EEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS
T ss_pred             eEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            766543   457888999999999999999999999864

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.93  E-value=7.7e-24  Score=122.37  Aligned_cols=112  Identities=19%  Similarity=0.249  Sum_probs=95.3

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCC----CcEEEeeccCCeeEEEEcc--CCCEEEEeeCCCcEEEeeCCCCC-
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG----QPVTVAMHDAPIKEVAWIP--EMNLLATGSWDKTLKYWDTRQPN-   73 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~i~~w~~~~~~-   73 (112)
                      |++++|+|++++|++++.|+.|++|++.+..    ....+..|...|.+++|+|  ++.++++++.|+.|++||+++.+ 
T Consensus        14 v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~   93 (351)
T 3f3f_A           14 VHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQE   93 (351)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSC
T ss_pred             eeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcc
Confidence            5789999999999999999999999998764    3345678999999999999  59999999999999999998763 


Q ss_pred             --------ceEEec---CCCeEEEEeeC--CCEEEEEeCCCcEEEEECcCCC
Q 045566           74 --------PVHTQQ---LPDRCYALTVR--YPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        74 --------~~~~~~---~~~~~~~~~~~--~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                              .+..+.   ..+..++|+|+  +.++++++.|+.|++||+++++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~  145 (351)
T 3f3f_A           94 ECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPS  145 (351)
T ss_dssp             TTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTT
T ss_pred             cccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChH
Confidence                    233333   34578899998  9999999999999999998753

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.92  E-value=2.5e-24  Score=124.51  Aligned_cols=111  Identities=19%  Similarity=0.349  Sum_probs=94.6

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCC--CcEEEeeccCCeeEEEEcc--CCCEEEEeeCCCcEEEeeCCCCC--c
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG--QPVTVAMHDAPIKEVAWIP--EMNLLATGSWDKTLKYWDTRQPN--P   74 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~i~~w~~~~~~--~   74 (112)
                      |.+++|+|++++|++|+.|+.|++||+.+++  ....+.+|...|.+++|++  ++.++++++.|+.|++||+++++  .
T Consensus        16 V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~   95 (316)
T 3bg1_A           16 IHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEK   95 (316)
T ss_dssp             EEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCE
T ss_pred             EEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceE
Confidence            5789999999999999999999999998764  3456789999999999975  48899999999999999998763  3


Q ss_pred             eEEe---cCCCeEEEEeeC--CCEEEEEeCCCcEEEEECcCC
Q 045566           75 VHTQ---QLPDRCYALTVR--YPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        75 ~~~~---~~~~~~~~~~~~--~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      ...+   ...+..++|+|+  +.++++++.|+.|++||++.+
T Consensus        96 ~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~  137 (316)
T 3bg1_A           96 SHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE  137 (316)
T ss_dssp             EEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSS
T ss_pred             EEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC
Confidence            3333   345688999997  789999999999999998753

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.92  E-value=7.6e-24  Score=123.51  Aligned_cols=111  Identities=14%  Similarity=0.094  Sum_probs=94.1

Q ss_pred             CeeEEEcC--CCCEEEEEcCCCcEEEEEcCCCCCcEEEe-eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCce-E
Q 045566            1 VLCSTWKD--DGTTVFSGGCDKQVKMWPLLSGGQPVTVA-MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV-H   76 (112)
Q Consensus         1 v~~~~~~~--~~~~l~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~-~   76 (112)
                      |.+++|+|  +++++++++.|+.|++||+++++...... .+...+.+++|+|++.++++|+.|+.|++||+++.+.+ .
T Consensus       128 v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~  207 (343)
T 3lrv_A          128 IIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASS  207 (343)
T ss_dssp             EEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCE
T ss_pred             EEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCcc
Confidence            46899999  99999999999999999999888765553 44567999999999999999999999999999988766 4


Q ss_pred             Eec----CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           77 TQQ----LPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        77 ~~~----~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      .+.    ..+..++|+|++.++++++ ++.|++||+++++
T Consensus       208 ~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~  246 (343)
T 3lrv_A          208 RFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDV  246 (343)
T ss_dssp             ECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSST
T ss_pred             EEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCC
Confidence            443    3457899999999999999 4599999998763

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.92  E-value=5.1e-24  Score=123.83  Aligned_cols=110  Identities=22%  Similarity=0.338  Sum_probs=92.5

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCC----CCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCC--Cc
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSG----GQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP--NP   74 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~--~~   74 (112)
                      |.+++|+|++++|++|+.|+.|++||+...    +.+..+..|...|.+++|+|++.++++++.|+.|++||.++.  ++
T Consensus       110 V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~  189 (330)
T 2hes_X          110 VKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWEC  189 (330)
T ss_dssp             EEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeE
Confidence            468999999999999999999999998533    234567789999999999999999999999999999998765  34


Q ss_pred             eEEec---CCCeEEEEeeC--CCEEEEEeCCCcEEEEECcC
Q 045566           75 VHTQQ---LPDRCYALTVR--YPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        75 ~~~~~---~~~~~~~~~~~--~~~~~~~~~d~~v~~~d~~~  110 (112)
                      +..+.   ..+..+.|+|+  +..+++++.|+.|++||++.
T Consensus       190 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~  230 (330)
T 2hes_X          190 VAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG  230 (330)
T ss_dssp             EEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred             EEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence            44443   34567889998  67899999999999999864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.92  E-value=1.2e-23  Score=124.67  Aligned_cols=110  Identities=22%  Similarity=0.379  Sum_probs=94.0

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeecc------------------CCeeEEEEccCCCEEEEeeCCC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHD------------------APIKEVAWIPEMNLLATGSWDK   62 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~------------------~~v~~~~~~~~~~~~~~~~~~~   62 (112)
                      |.+++|+|+|++|++++ ++.+++|++.+++....+..+.                  ..|.+++|+|+++++++++.|+
T Consensus        67 V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~  145 (393)
T 1erj_A           67 VCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDR  145 (393)
T ss_dssp             CCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCC
Confidence            57899999999999987 5789999998887766664332                  2489999999999999999999


Q ss_pred             cEEEeeCCCCCceEEecC---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           63 TLKYWDTRQPNPVHTQQL---PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        63 ~i~~w~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      .|++||+.+.+.+..+..   .+..++|+|++..+++++.|+.|++||++++
T Consensus       146 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~  197 (393)
T 1erj_A          146 LIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG  197 (393)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             eEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC
Confidence            999999998877666543   4578899999999999999999999999875

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.92  E-value=7.4e-24  Score=126.88  Aligned_cols=110  Identities=15%  Similarity=0.199  Sum_probs=91.8

Q ss_pred             CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCcEE--EeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCceE
Q 045566            1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQPVT--VAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNPVH   76 (112)
Q Consensus         1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~~~   76 (112)
                      |+|++|+| ++++|++|+.||.|++||+.+++....  +.+|.+.|++++|+| ++.++++++.|+.|++||+++.....
T Consensus       122 V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~  201 (435)
T 4e54_B          122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRV  201 (435)
T ss_dssp             EEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEE
T ss_pred             EEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeE
Confidence            57999999 567999999999999999987765544  357999999999998 78999999999999999997654322


Q ss_pred             Eec-----CCCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           77 TQQ-----LPDRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        77 ~~~-----~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      ...     .....+.|++++.++++|+.|+.|++||++.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~  240 (435)
T 4e54_B          202 FASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG  240 (435)
T ss_dssp             EECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS
T ss_pred             EeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc
Confidence            221     1245788999999999999999999999864

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.92  E-value=8.9e-24  Score=123.22  Aligned_cols=110  Identities=15%  Similarity=0.150  Sum_probs=94.0

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCc-EEEee-ccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQP-VTVAM-HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ   78 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~   78 (112)
                      |.+++|+|++.++++|+.|+.|++||+++++.. ..+.. |...|.+++|+|++.++++++.+ .|++||+++.+.+..+
T Consensus       173 i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~-~v~iwd~~~~~~~~~~  251 (343)
T 3lrv_A          173 YSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQ-TVVCFDLRKDVGTLAY  251 (343)
T ss_dssp             CCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESS-BEEEEETTSSTTCBSS
T ss_pred             eEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCC-eEEEEEcCCCCcceee
Confidence            568999999999999999999999999998887 67777 99999999999999999999954 9999999988765433


Q ss_pred             c------CCC--eEEEEeeCCCEEEEEeC-CCcEEEEECcCC
Q 045566           79 Q------LPD--RCYALTVRYPLMVVGTA-DRNLVVFNLQNP  111 (112)
Q Consensus        79 ~------~~~--~~~~~~~~~~~~~~~~~-d~~v~~~d~~~~  111 (112)
                      .      .+.  ..++|+|+++++++++. |+.+++|++.+.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~  293 (343)
T 3lrv_A          252 PTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK  293 (343)
T ss_dssp             CCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence            2      122  35899999999999998 999999998543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.92  E-value=9.6e-24  Score=123.01  Aligned_cols=112  Identities=21%  Similarity=0.468  Sum_probs=97.1

Q ss_pred             CeeEEEcCC---CCEEEEEcCCCcEEEEEcCC-CCCc-EEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCce
Q 045566            1 VLCSTWKDD---GTTVFSGGCDKQVKMWPLLS-GGQP-VTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV   75 (112)
Q Consensus         1 v~~~~~~~~---~~~l~~~~~~~~v~~~~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~   75 (112)
                      |.+++|+|+   |++|++|+.|+.|++|++.+ +... ..+..|...|.+++|+|++.++++++.|+.|++||+++.+.+
T Consensus        42 v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~  121 (368)
T 3mmy_A           42 IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAI  121 (368)
T ss_dssp             EEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             eEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCce
Confidence            579999998   69999999999999999987 4444 567789999999999999999999999999999999988765


Q ss_pred             EEe--cCCCeEEEE--eeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           76 HTQ--QLPDRCYAL--TVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        76 ~~~--~~~~~~~~~--~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      ...  ...+..+.|  ++++.++++++.|+.|++||+++++
T Consensus       122 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  162 (368)
T 3mmy_A          122 QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN  162 (368)
T ss_dssp             EEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS
T ss_pred             eeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc
Confidence            443  345678888  7888899999999999999998763

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.92  E-value=8.1e-24  Score=122.50  Aligned_cols=110  Identities=20%  Similarity=0.271  Sum_probs=94.9

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |.+++|+|+++++++|+.|+.|++||+.+++....+.+|...|.+++|+|++.++++++.|+.|++||++. +.+..+..
T Consensus        68 v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~  146 (319)
T 3frx_A           68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLG  146 (319)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECC
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEec
Confidence            46789999999999999999999999999998889999999999999999999999999999999999974 34444433


Q ss_pred             ---CCeEEEEeeC------CCEEEEEeCCCcEEEEECcCC
Q 045566           81 ---PDRCYALTVR------YPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        81 ---~~~~~~~~~~------~~~~~~~~~d~~v~~~d~~~~  111 (112)
                         .+..+.+.|.      +..+++++.|+.|++||++++
T Consensus       147 h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~  186 (319)
T 3frx_A          147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF  186 (319)
T ss_dssp             CSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTT
T ss_pred             cCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc
Confidence               3456777774      448999999999999999864

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.92  E-value=6e-24  Score=124.73  Aligned_cols=112  Identities=25%  Similarity=0.380  Sum_probs=97.1

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCC-EEEEeeCCCcEEEeeCCCCCceEEec
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      |.+++|+|++++|++|+.|+.|++||+.+++....+..|...|.+++|++++. .+++++.|+.|++||+++++......
T Consensus       142 V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~  221 (357)
T 4g56_B          142 VKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID  221 (357)
T ss_dssp             EEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee
Confidence            57899999999999999999999999999988889999999999999999764 78899999999999999887665443


Q ss_pred             C-----CCeEEEEeeC-CCEEEEEeCCCcEEEEECcCCC
Q 045566           80 L-----PDRCYALTVR-YPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        80 ~-----~~~~~~~~~~-~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      .     ....++|+|+ +.++++++.|+.|++||+++++
T Consensus       222 ~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~  260 (357)
T 4g56_B          222 FCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD  260 (357)
T ss_dssp             CTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG
T ss_pred             eccccccccchhhhhcccceEEEeecccceeEEECCCCc
Confidence            2     3467888887 4678899999999999998753

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.92  E-value=5.4e-24  Score=124.10  Aligned_cols=111  Identities=15%  Similarity=0.204  Sum_probs=99.8

Q ss_pred             CeeEEEcCC----CCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCce
Q 045566            1 VLCSTWKDD----GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNPV   75 (112)
Q Consensus         1 v~~~~~~~~----~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~~   75 (112)
                      |.+++|+|+    ++++++++.|+.|++||+.+++....+..|...|.+++|+| ++.++++++.|+.|++||+++.+.+
T Consensus        72 v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  151 (366)
T 3k26_A           72 FYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLV  151 (366)
T ss_dssp             EEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEE
T ss_pred             EEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEE
Confidence            468899998    67999999999999999999988888889999999999999 9999999999999999999988777


Q ss_pred             EEe------cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           76 HTQ------QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        76 ~~~------~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      ..+      ...+..++|+|++..+++++.|+.|++||++++
T Consensus       152 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  193 (366)
T 3k26_A          152 AIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSK  193 (366)
T ss_dssp             EEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSH
T ss_pred             EEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCC
Confidence            665      234578899999999999999999999999864

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.92  E-value=9.1e-24  Score=124.59  Aligned_cols=112  Identities=12%  Similarity=0.206  Sum_probs=100.0

Q ss_pred             CeeEEEcCCCCEEEEEcCC---CcEEEEEcCCCCCcEEEee-------------ccCCeeEEEEccCCCEEEEeeCCCcE
Q 045566            1 VLCSTWKDDGTTVFSGGCD---KQVKMWPLLSGGQPVTVAM-------------HDAPIKEVAWIPEMNLLATGSWDKTL   64 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~---~~v~~~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~~~~~~~~~i   64 (112)
                      |.+++|+|++++|++++.|   +.|++||+.+++.+..+..             |...|.+++|+|++.++++++.|+.|
T Consensus       236 i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  315 (397)
T 1sq9_A          236 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL  315 (397)
T ss_dssp             EEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred             cceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeE
Confidence            4689999999999999999   9999999999988888887             99999999999999999999999999


Q ss_pred             EEeeCCCCCceEEec------------------------CCCeEEEEeeCC----------CEEEEEeCCCcEEEEECcC
Q 045566           65 KYWDTRQPNPVHTQQ------------------------LPDRCYALTVRY----------PLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        65 ~~w~~~~~~~~~~~~------------------------~~~~~~~~~~~~----------~~~~~~~~d~~v~~~d~~~  110 (112)
                      ++||+++.+.+..+.                        ..+..++|+|++          +++++++.|+.|++||+++
T Consensus       316 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  395 (397)
T 1sq9_A          316 RFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG  395 (397)
T ss_dssp             EEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred             EEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence            999999888776665                        235688999998          7999999999999999998


Q ss_pred             CC
Q 045566          111 PQ  112 (112)
Q Consensus       111 ~~  112 (112)
                      ++
T Consensus       396 g~  397 (397)
T 1sq9_A          396 GK  397 (397)
T ss_dssp             --
T ss_pred             CC
Confidence            74

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.92  E-value=9.3e-24  Score=129.50  Aligned_cols=105  Identities=26%  Similarity=0.389  Sum_probs=93.7

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec-
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ-   79 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~-   79 (112)
                      |.+++|+|++++|++++.|+.|++|+. +++.+..+.+|...|++++|+|+++++++++.|+.|++||. +++.+..+. 
T Consensus       470 v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~  547 (577)
T 2ymu_A          470 VRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG  547 (577)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcC
Confidence            468999999999999999999999994 67778888999999999999999999999999999999996 456555554 


Q ss_pred             --CCCeEEEEeeCCCEEEEEeCCCcEEEEE
Q 045566           80 --LPDRCYALTVRYPLMVVGTADRNLVVFN  107 (112)
Q Consensus        80 --~~~~~~~~~~~~~~~~~~~~d~~v~~~d  107 (112)
                        ..+..++|+|++++|++++.|+.|++||
T Consensus       548 h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          548 HSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence              3567899999999999999999999997

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.92  E-value=2.4e-23  Score=121.36  Aligned_cols=111  Identities=18%  Similarity=0.261  Sum_probs=101.5

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec-
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ-   79 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~-   79 (112)
                      |.+++|+|++++|++++.|+.|++||+.+++....+..|...|.+++|+|+++++++++.|+.|++||+.+.+.+..+. 
T Consensus        35 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  114 (369)
T 3zwl_B           35 LTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKS  114 (369)
T ss_dssp             EEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeec
Confidence            5789999999999999999999999999999988999999999999999999999999999999999999988776654 


Q ss_pred             -CCCeEEEEeeCCCEEEEEeCC-----CcEEEEECcCC
Q 045566           80 -LPDRCYALTVRYPLMVVGTAD-----RNLVVFNLQNP  111 (112)
Q Consensus        80 -~~~~~~~~~~~~~~~~~~~~d-----~~v~~~d~~~~  111 (112)
                       ..+..+.|+|++..+++++.+     +.+.+||++.+
T Consensus       115 ~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~  152 (369)
T 3zwl_B          115 PVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERD  152 (369)
T ss_dssp             SSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEEC
T ss_pred             CCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCC
Confidence             345788999999999999999     99999998754

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.92  E-value=7.8e-24  Score=124.16  Aligned_cols=111  Identities=15%  Similarity=0.115  Sum_probs=94.4

Q ss_pred             CeeEEEcCCCCEEEEEcCCCc-EEEEEcCCCCCcEEEe-e-ccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCce--
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQ-VKMWPLLSGGQPVTVA-M-HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV--   75 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~-v~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~--   75 (112)
                      |.+++|+|++++|++|+.|+. |++||+.+++.+..+. + |...|.+++|+|+++++++++.|+.|++||++.....  
T Consensus       198 v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~  277 (355)
T 3vu4_A          198 IKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKR  277 (355)
T ss_dssp             EEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCS
T ss_pred             eEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccc
Confidence            578999999999999999998 9999999999988887 4 8999999999999999999999999999999765311  


Q ss_pred             EEe--------------------c----CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           76 HTQ--------------------Q----LPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        76 ~~~--------------------~----~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      ..+                    .    .+...++|++++..+++++.||.+++|++..+
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~  337 (355)
T 3vu4_A          278 HALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD  337 (355)
T ss_dssp             EETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred             ccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence            110                    0    01256889999999999999999999997653

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.92  E-value=2.2e-23  Score=123.75  Aligned_cols=109  Identities=17%  Similarity=0.129  Sum_probs=97.4

Q ss_pred             eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec---
Q 045566            3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ---   79 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~---   79 (112)
                      ...|+|++++|++++.|+.|++||+.+++....+..|...|.+++|+|++.++++++.|+.|++||+++.+.+..+.   
T Consensus       102 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~  181 (420)
T 3vl1_A          102 VDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHR  181 (420)
T ss_dssp             EEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCS
T ss_pred             EEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCC
Confidence            34688999999999999999999998777766667899999999999999999999999999999999887766554   


Q ss_pred             CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           80 LPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      ..+..++|+|++..+++++.|+.|++||++++
T Consensus       182 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~  213 (420)
T 3vl1_A          182 ATVTDIAIIDRGRNVLSASLDGTIRLWECGTG  213 (420)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEETTTT
T ss_pred             CcEEEEEEcCCCCEEEEEcCCCcEEEeECCCC
Confidence            35578999999999999999999999999875

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.92  E-value=3.8e-23  Score=120.61  Aligned_cols=109  Identities=17%  Similarity=0.272  Sum_probs=93.4

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE---
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT---   77 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~---   77 (112)
                      |.+++|+|++.++++++.|+.|++||+++++....+.+|...|.+++|+|++.++++++.|+.|++||+........   
T Consensus        79 V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  158 (343)
T 2xzm_R           79 VSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEK  158 (343)
T ss_dssp             EEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTT
T ss_pred             eEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecc
Confidence            46899999999999999999999999999998888999999999999999999999999999999999974322211   


Q ss_pred             --ecCCCeEEEEeeCC----------CEEEEEeCCCcEEEEECc
Q 045566           78 --QQLPDRCYALTVRY----------PLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        78 --~~~~~~~~~~~~~~----------~~~~~~~~d~~v~~~d~~  109 (112)
                        +...+..+.|+|++          .++++++.|+.|++||.+
T Consensus       159 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~  202 (343)
T 2xzm_R          159 ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN  202 (343)
T ss_dssp             TSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT
T ss_pred             cCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC
Confidence              12234678888876          789999999999999953

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.92  E-value=4.8e-23  Score=119.73  Aligned_cols=108  Identities=14%  Similarity=0.138  Sum_probs=83.9

Q ss_pred             eeEEEcC---CCCEEEEEcCCCcEEEEEcCCCCCcEEEeecc---CCeeEEEEccCCC----------------------
Q 045566            2 LCSTWKD---DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHD---APIKEVAWIPEMN----------------------   53 (112)
Q Consensus         2 ~~~~~~~---~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~----------------------   53 (112)
                      ..++|+|   ++..|++++.|++|++||+.+++.+.++..|.   ..+.+++|+|++.                      
T Consensus       182 ~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~t  261 (356)
T 2w18_A          182 TILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQ  261 (356)
T ss_dssp             CEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEE
T ss_pred             eeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcE
Confidence            4567777   66889999999999999999999888886432   2344444544433                      


Q ss_pred             -----------------------------------EEEEeeCCCcEEEeeCCCCCceEEecCC---C-eEEEEeeCCCEE
Q 045566           54 -----------------------------------LLATGSWDKTLKYWDTRQPNPVHTQQLP---D-RCYALTVRYPLM   94 (112)
Q Consensus        54 -----------------------------------~~~~~~~~~~i~~w~~~~~~~~~~~~~~---~-~~~~~~~~~~~~   94 (112)
                                                         .+++++.|++|++||+.+++.+..+..+   . ..++|+|++++|
T Consensus       262 IklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~L  341 (356)
T 2w18_A          262 LIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHL  341 (356)
T ss_dssp             EEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEE
T ss_pred             EEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEE
Confidence                                               3466678999999999999988887543   2 357899999999


Q ss_pred             EEEeCCCcEEEEECc
Q 045566           95 VVGTADRNLVVFNLQ  109 (112)
Q Consensus        95 ~~~~~d~~v~~~d~~  109 (112)
                      ++|+.|++|++||+.
T Consensus       342 aSGS~D~TIklWd~~  356 (356)
T 2w18_A          342 LAGQKDGNIFVYHYS  356 (356)
T ss_dssp             EEECTTSCEEEEEEC
T ss_pred             EEEECCCcEEEecCC
Confidence            999999999999963

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.91  E-value=4e-25  Score=129.77  Aligned_cols=111  Identities=16%  Similarity=0.218  Sum_probs=90.8

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCC--CCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC---ce
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSG--GQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN---PV   75 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~---~~   75 (112)
                      |.+++|+|++++|++++.|+.|++|++.++  +....+..|...|.+++|+|+++++++++.|+.|++||+.+.+   ..
T Consensus        14 v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~   93 (377)
T 3dwl_C           14 SYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQT   93 (377)
T ss_dssp             CSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCE
T ss_pred             EEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeee
Confidence            578999999999999999999999999877  5666778899999999999999999999999999999998866   33


Q ss_pred             EEe---cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           76 HTQ---QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        76 ~~~---~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      ..+   ...+..++|+|+++.+++++.|+.|++||++++
T Consensus        94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  132 (377)
T 3dwl_C           94 LVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQE  132 (377)
T ss_dssp             EECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC---
T ss_pred             eEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCc
Confidence            332   345678899999999999999999999998865

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.91  E-value=4.9e-23  Score=119.23  Aligned_cols=110  Identities=21%  Similarity=0.265  Sum_probs=91.3

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec-
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ-   79 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~-   79 (112)
                      |.+++|+|++++|++|+.|+.|++||+.+.+.+..+. +...+.++.|+|++.++ +++.|+.|++||+++...+..+. 
T Consensus       218 v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~  295 (340)
T 4aow_A          218 LNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD-GGDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQ  295 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE-CSSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECC
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec-CCceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccc
Confidence            4689999999999999999999999999887776665 45689999999987654 56679999999998776554432 


Q ss_pred             -----------CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           80 -----------LPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        80 -----------~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                                 ..+..++|+|++++|++++.|+.|++||+++|+
T Consensus       296 ~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          296 EVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             C-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             cceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence                       234678999999999999999999999999874

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.91  E-value=3.8e-23  Score=130.78  Aligned_cols=111  Identities=16%  Similarity=0.255  Sum_probs=101.9

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |.+++|+|+++++++++.|+.|++||..+++....+..|...|.+++|+|+++++++++.|+.|++||+.+++.+..+..
T Consensus        16 v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~   95 (814)
T 3mkq_A           16 VKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA   95 (814)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEec
Confidence            57899999999999999999999999999888888889999999999999999999999999999999999887766543


Q ss_pred             ---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           81 ---PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        81 ---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                         .+..++|+|+++.+++++.|+.|++||++++
T Consensus        96 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~  129 (814)
T 3mkq_A           96 HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN  129 (814)
T ss_dssp             CSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGT
T ss_pred             CCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC
Confidence               4578999999999999999999999998764

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.91  E-value=3.8e-23  Score=120.92  Aligned_cols=111  Identities=18%  Similarity=0.345  Sum_probs=98.0

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCC--CcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE-
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG--QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT-   77 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~-   77 (112)
                      |.+++|+|+++++++++.|+.|++|++.+++  ....+..|...|.+++|+|++.++++++.|+.|++||+++.+.... 
T Consensus        11 i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~   90 (372)
T 1k8k_C           11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL   90 (372)
T ss_dssp             CCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEE
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeE
Confidence            6789999999999999999999999998876  6778888999999999999999999999999999999987754333 


Q ss_pred             ----ecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           78 ----QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        78 ----~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                          +...+..+.|+|+++++++++.|+.|++||++.+
T Consensus        91 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~  128 (372)
T 1k8k_C           91 VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQE  128 (372)
T ss_dssp             ECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETT
T ss_pred             EeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCC
Confidence                2334578899999999999999999999998765

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.91  E-value=6.9e-23  Score=120.65  Aligned_cols=110  Identities=17%  Similarity=0.277  Sum_probs=96.8

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCC-EEEEeeCCCcEEEeeCCC----CCce
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDTRQ----PNPV   75 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~i~~w~~~~----~~~~   75 (112)
                      |.+++|+|+++++++++.|+.|++||+ +++....+..|...|.+++|+|+++ ++++++.|+.|++||+++    ...+
T Consensus       166 v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  244 (383)
T 3ei3_B          166 YCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYI  244 (383)
T ss_dssp             EEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEE
T ss_pred             eEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceE
Confidence            468999999999999999999999998 5677778888999999999999988 999999999999999987    4444


Q ss_pred             EEe--cCCCeEEEEee-CCCEEEEEeCCCcEEEEECcCC
Q 045566           76 HTQ--QLPDRCYALTV-RYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        76 ~~~--~~~~~~~~~~~-~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      ...  ...+..++|+| ++.++++++.|+.|++||++++
T Consensus       245 ~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~  283 (383)
T 3ei3_B          245 AEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDW  283 (383)
T ss_dssp             EEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBT
T ss_pred             EEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCC
Confidence            433  44567899999 9999999999999999999875

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.91  E-value=3.8e-23  Score=118.64  Aligned_cols=109  Identities=19%  Similarity=0.338  Sum_probs=90.0

Q ss_pred             CeeEEEcCC-------------CCEEEEEcCCCcEEEEEcCCCC----CcEEEeeccCCeeEEEEccCC---CEEEEeeC
Q 045566            1 VLCSTWKDD-------------GTTVFSGGCDKQVKMWPLLSGG----QPVTVAMHDAPIKEVAWIPEM---NLLATGSW   60 (112)
Q Consensus         1 v~~~~~~~~-------------~~~l~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~   60 (112)
                      |.+++|+|+             +++|++|+.|+.|++||+++.+    ....+.+|...|.+++|+|++   .++++++.
T Consensus       148 v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~  227 (297)
T 2pm7_B          148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQ  227 (297)
T ss_dssp             EEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET
T ss_pred             cceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEEC
Confidence            457889986             5799999999999999998766    344677899999999999984   89999999


Q ss_pred             CCcEEEeeCCCCCc--e-EE-----ecCCCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           61 DKTLKYWDTRQPNP--V-HT-----QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        61 ~~~i~~w~~~~~~~--~-~~-----~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                      |+.|++||+++...  . ..     +...+..++|+|++++|++++.|+.|++|+..
T Consensus       228 D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          228 DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             CCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            99999999876431  1 11     22345678999999999999999999999976

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.91  E-value=6.3e-23  Score=128.61  Aligned_cols=111  Identities=23%  Similarity=0.363  Sum_probs=96.1

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE---
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT---   77 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~---   77 (112)
                      |.+++|+|++++|++|+.|+.|++||+.++.....+.+|...|.+++|+|++.++++++.|+.|++||.........   
T Consensus       433 v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~  512 (694)
T 3dm0_A          433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEG  512 (694)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSS
T ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccC
Confidence            46899999999999999999999999999888888999999999999999999999999999999999865433222   


Q ss_pred             ---ecCCCeEEEEeeCC--CEEEEEeCCCcEEEEECcCC
Q 045566           78 ---QQLPDRCYALTVRY--PLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        78 ---~~~~~~~~~~~~~~--~~~~~~~~d~~v~~~d~~~~  111 (112)
                         +...+.++.|+|++  ..+++++.|+.|++||++++
T Consensus       513 ~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~  551 (694)
T 3dm0_A          513 GEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC  551 (694)
T ss_dssp             TTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC
T ss_pred             CCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC
Confidence               12235678898876  57999999999999999875

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.91  E-value=4.5e-23  Score=120.69  Aligned_cols=111  Identities=17%  Similarity=0.306  Sum_probs=96.1

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcC--CCCCcEEEeeccCCeeEEEEccC--CCEEEEeeCCCcEEEeeCCCCC--c
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLL--SGGQPVTVAMHDAPIKEVAWIPE--MNLLATGSWDKTLKYWDTRQPN--P   74 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~i~~w~~~~~~--~   74 (112)
                      |.+++|+|++++|++++.|+.|++|++.  +.+....+..|...|.+++|+++  +.++++++.|+.|++||+++.+  .
T Consensus        14 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~   93 (379)
T 3jrp_A           14 IHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQ   93 (379)
T ss_dssp             EEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEE
T ss_pred             EEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeE
Confidence            5789999999999999999999999987  44455677889999999999876  8999999999999999998875  4


Q ss_pred             eEEec---CCCeEEEEeeC--CCEEEEEeCCCcEEEEECcCC
Q 045566           75 VHTQQ---LPDRCYALTVR--YPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        75 ~~~~~---~~~~~~~~~~~--~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      +..+.   ..+..++|+|+  +..+++++.|+.|++||++++
T Consensus        94 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  135 (379)
T 3jrp_A           94 IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN  135 (379)
T ss_dssp             EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTT
T ss_pred             eeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCC
Confidence            44433   35678899998  899999999999999999875

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.91  E-value=8.5e-23  Score=120.46  Aligned_cols=110  Identities=12%  Similarity=0.111  Sum_probs=98.6

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEee---c---cCCeeEEEEccCCCEEEEeeCC---CcEEEeeCCC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAM---H---DAPIKEVAWIPEMNLLATGSWD---KTLKYWDTRQ   71 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~~~~~~~~---~~i~~w~~~~   71 (112)
                      |.+++|+|++ .+++++.|+.|++||+++.+....+..   |   ...+.+++|+|++.++++++.|   +.|++||+++
T Consensus       189 i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~  267 (397)
T 1sq9_A          189 ATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF  267 (397)
T ss_dssp             CCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT
T ss_pred             ceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence            5689999999 999999999999999998888888887   8   8999999999999999999999   9999999998


Q ss_pred             CCceEEecC----------------CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           72 PNPVHTQQL----------------PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        72 ~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      .+.+..+..                .+..++|+|+++++++++.|+.|++||++++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  323 (397)
T 1sq9_A          268 GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK  323 (397)
T ss_dssp             CCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred             CcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            887766543                4568899999999999999999999999875

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.91  E-value=1e-22  Score=121.68  Aligned_cols=111  Identities=12%  Similarity=0.237  Sum_probs=93.7

Q ss_pred             CeeEEEcCCC-CEEEEEcCCCcEEEEEcCCCCC----cEEEeeccC------------CeeEEEEccCCCEEEEeeCCCc
Q 045566            1 VLCSTWKDDG-TTVFSGGCDKQVKMWPLLSGGQ----PVTVAMHDA------------PIKEVAWIPEMNLLATGSWDKT   63 (112)
Q Consensus         1 v~~~~~~~~~-~~l~~~~~~~~v~~~~~~~~~~----~~~~~~~~~------------~v~~~~~~~~~~~~~~~~~~~~   63 (112)
                      |.+++|+|++ +++++|+.|+.|++||+++++.    ...+..|..            .|.+++|+|++.++++++. +.
T Consensus       229 v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~  307 (447)
T 3dw8_B          229 ITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LS  307 (447)
T ss_dssp             EEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SE
T ss_pred             eEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-Ce
Confidence            4689999998 9999999999999999998876    667777765            8999999999999999998 99


Q ss_pred             EEEeeCCC-CCceEEecCCC------------------eEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           64 LKYWDTRQ-PNPVHTQQLPD------------------RCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        64 i~~w~~~~-~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      |++||+++ .+.+..+..+.                  ..++|+|++.++++++.|+.|++||+++++
T Consensus       308 v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~  375 (447)
T 3dw8_B          308 VKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR  375 (447)
T ss_dssp             EEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCC
T ss_pred             EEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCc
Confidence            99999987 66555554322                  128999999999999999999999998763

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.91  E-value=2.9e-22  Score=115.71  Aligned_cols=111  Identities=16%  Similarity=0.264  Sum_probs=97.6

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCC--CcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG--QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ   78 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~   78 (112)
                      |.+++|+|+++.+++++.|+.+++|++.+++  ....+..|...+.+++|+|++.++++++.++.|++||+++.+.+..+
T Consensus       100 v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~  179 (337)
T 1gxr_A          100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF  179 (337)
T ss_dssp             EEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeee
Confidence            4689999999999999999999999998877  34466778889999999999999999999999999999988777666


Q ss_pred             cC---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           79 QL---PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        79 ~~---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      ..   .+..++|+|+++.+++++.|+.|++||++++
T Consensus       180 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  215 (337)
T 1gxr_A          180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG  215 (337)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             ecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC
Confidence            43   4578899999999999999999999999875

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.91  E-value=7.5e-23  Score=125.95  Aligned_cols=109  Identities=17%  Similarity=0.231  Sum_probs=97.5

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEee-ccCCeeEEEEcc----------CCCEEEEeeCCCcEEEeeC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAM-HDAPIKEVAWIP----------EMNLLATGSWDKTLKYWDT   69 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~~~----------~~~~~~~~~~~~~i~~w~~   69 (112)
                      |.+++|+|++++|++++.|+.|++|++.+++.+..+.. |...|++++|+|          ++.++++++.|+.|++||+
T Consensus       491 v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~  570 (615)
T 1pgu_A          491 PSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV  570 (615)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEES
T ss_pred             eEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEEC
Confidence            46899999999999999999999999998888777777 999999999999          9999999999999999999


Q ss_pred             CCC-CceEEec---CCCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           70 RQP-NPVHTQQ---LPDRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        70 ~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      .+. +.+..+.   ..+..++|+|++. +++++.|+.|++||+.+
T Consensus       571 ~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          571 KRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             SCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred             CCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence            987 5665544   3467899999999 99999999999999875

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.91  E-value=2.5e-22  Score=115.95  Aligned_cols=112  Identities=18%  Similarity=0.249  Sum_probs=100.9

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec-
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ-   79 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~-   79 (112)
                      |.+++|+|+++.+++++.|+.|++||+++++....+..|...+.+++|+|++..+++++.++.+++||+++.+.+..+. 
T Consensus       144 i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~  223 (337)
T 1gxr_A          144 CYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF  223 (337)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecC
Confidence            4688999999999999999999999999888888888899999999999999999999999999999999887766554 


Q ss_pred             -CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           80 -LPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        80 -~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                       .....++|+|+++.+++++.++.+++||+++++
T Consensus       224 ~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~  257 (337)
T 1gxr_A          224 TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD  257 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC
T ss_pred             CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC
Confidence             345788899999999999999999999998753

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.91  E-value=5.7e-23  Score=121.85  Aligned_cols=111  Identities=19%  Similarity=0.409  Sum_probs=98.6

Q ss_pred             CeeEEEcCCC-CEEEEEcCCCcEEEEEcCCCCCcEEE--eeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE
Q 045566            1 VLCSTWKDDG-TTVFSGGCDKQVKMWPLLSGGQPVTV--AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT   77 (112)
Q Consensus         1 v~~~~~~~~~-~~l~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~   77 (112)
                      |.+++|+|++ +.+++++.|+.|++||+.+++....+  ..|...|.+++|+|++.++++++.|+.|++||+++++.+..
T Consensus       134 v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  213 (402)
T 2aq5_A          134 VGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAE  213 (402)
T ss_dssp             EEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEE
T ss_pred             EEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeee
Confidence            4689999998 69999999999999999988888888  77999999999999999999999999999999999887766


Q ss_pred             e-cC----CCeEEEEeeCCCEEEEE---eCCCcEEEEECcCC
Q 045566           78 Q-QL----PDRCYALTVRYPLMVVG---TADRNLVVFNLQNP  111 (112)
Q Consensus        78 ~-~~----~~~~~~~~~~~~~~~~~---~~d~~v~~~d~~~~  111 (112)
                      + ..    ....+.|++++.+++++   +.|+.|++||++++
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~  255 (402)
T 2aq5_A          214 KDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHL  255 (402)
T ss_dssp             EECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBC
T ss_pred             eccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccc
Confidence            6 22    24678899999999998   78999999999875

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.91  E-value=1.6e-23  Score=123.01  Aligned_cols=109  Identities=18%  Similarity=0.270  Sum_probs=87.4

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCC---CcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCc---
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG---QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP---   74 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~---   74 (112)
                      |.+++|+|++++|++++.|+.|++||+.+++   ....+..|...|.+++|+|++..+++++.|+.|++||+++.+.   
T Consensus        58 v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  137 (377)
T 3dwl_C           58 VTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWV  137 (377)
T ss_dssp             EEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCC
T ss_pred             EEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccccee
Confidence            5789999999999999999999999998876   5566778999999999999999999999999999999987752   


Q ss_pred             eEEec----CCCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           75 VHTQQ----LPDRCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        75 ~~~~~----~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                      ...+.    ..+..++|+|++.++++++.|+.|++||++
T Consensus       138 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  176 (377)
T 3dwl_C          138 SKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAY  176 (377)
T ss_dssp             CEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEEC
T ss_pred             eeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEE
Confidence            33333    345788999999999999999999999985

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.90  E-value=2.7e-22  Score=131.50  Aligned_cols=112  Identities=25%  Similarity=0.407  Sum_probs=101.2

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |.+++|+|+++++++|+.|+.|++||..+++....+..|...|.+++|+|++.++++++.|+.|++||+.+++.+..+..
T Consensus       618 v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~  697 (1249)
T 3sfz_A          618 VYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDE  697 (1249)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcC
Confidence            57899999999999999999999999999999899999999999999999999999999999999999999988776644


Q ss_pred             ---CCeEEEEee--CCCEEEEEeCCCcEEEEECcCCC
Q 045566           81 ---PDRCYALTV--RYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        81 ---~~~~~~~~~--~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                         .+..+.|++  ++..+++++.|+.|++||+++++
T Consensus       698 ~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~  734 (1249)
T 3sfz_A          698 HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE  734 (1249)
T ss_dssp             CSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS
T ss_pred             CCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc
Confidence               456788888  55689999999999999998763

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.90  E-value=2.7e-23  Score=133.51  Aligned_cols=107  Identities=13%  Similarity=0.096  Sum_probs=91.1

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCC---------------------------------------------CcEE
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG---------------------------------------------QPVT   35 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~---------------------------------------------~~~~   35 (112)
                      |.+++|+|++++||+|+.|++|++|++.+++                                             ++..
T Consensus       491 V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  570 (902)
T 2oaj_A          491 VDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTA  570 (902)
T ss_dssp             EEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEE
T ss_pred             eeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEE
Confidence            5789999999999999999999999987652                                             1446


Q ss_pred             EeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE---------ecCCCeEEEEe-----eCC---CEEEEEe
Q 045566           36 VAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT---------QQLPDRCYALT-----VRY---PLMVVGT   98 (112)
Q Consensus        36 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~---------~~~~~~~~~~~-----~~~---~~~~~~~   98 (112)
                      +..|.+.|++++|+|+| ++++|+.|+.|++||+++...+..         +...+.+++|+     |++   .++++++
T Consensus       571 l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs  649 (902)
T 2oaj_A          571 VHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGT  649 (902)
T ss_dssp             ECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEE
T ss_pred             EEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEe
Confidence            67899999999999999 999999999999999987655431         12236789999     775   7999999


Q ss_pred             CCCcEEEEEC
Q 045566           99 ADRNLVVFNL  108 (112)
Q Consensus        99 ~d~~v~~~d~  108 (112)
                      .|+.|++||+
T Consensus       650 ~D~tv~~wd~  659 (902)
T 2oaj_A          650 DMGEVITYKI  659 (902)
T ss_dssp             TTSEEEEEEE
T ss_pred             cCCcEEEEEE
Confidence            9999999998

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.7e-22  Score=121.41  Aligned_cols=111  Identities=14%  Similarity=0.072  Sum_probs=97.5

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcE----EEeeccCCeeEEEEccC---CCEEEEeeCCCcEEEeeCCCCC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV----TVAMHDAPIKEVAWIPE---MNLLATGSWDKTLKYWDTRQPN   73 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~i~~w~~~~~~   73 (112)
                      |.+++|+|++++|++++.++.+.+|++...+...    .+..|...|.+++|+|+   +.++++++.|+.|++||+++.+
T Consensus       152 v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~  231 (450)
T 2vdu_B          152 PNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF  231 (450)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTT
T ss_pred             ceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc
Confidence            4689999999999999999999999998776543    66789999999999999   9999999999999999999888


Q ss_pred             ceEEe----cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           74 PVHTQ----QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        74 ~~~~~----~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      .+..+    ...+..++|+ ++.++++++.|+.|++||+++++
T Consensus       232 ~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~  273 (450)
T 2vdu_B          232 IVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGK  273 (450)
T ss_dssp             CEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCC
T ss_pred             eeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCc
Confidence            77653    2345788999 99999999999999999998764

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.90  E-value=3.9e-23  Score=123.76  Aligned_cols=110  Identities=20%  Similarity=0.245  Sum_probs=93.7

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCC-EEEEeeCCCcEEEeeCCCCCceE---
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDTRQPNPVH---   76 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~i~~w~~~~~~~~~---   76 (112)
                      +.+++|+|++++|++|+.|+.|++||+. ++.+..+..|...|.+++|+|++. ++++++.|+.|++||+++.+...   
T Consensus       212 ~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~  290 (435)
T 4e54_B          212 FCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFL  290 (435)
T ss_dssp             CCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCS
T ss_pred             EEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEE
Confidence            3578999999999999999999999986 455667788999999999999765 78899999999999998765332   


Q ss_pred             ---EecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           77 ---TQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        77 ---~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                         .+...+..++|+|++.+|++++.|+.|++||++++
T Consensus       291 ~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~  328 (435)
T 4e54_B          291 YSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW  328 (435)
T ss_dssp             BCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS
T ss_pred             EeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC
Confidence               23345678889999999999999999999999875

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.90  E-value=2.5e-22  Score=115.08  Aligned_cols=108  Identities=18%  Similarity=0.229  Sum_probs=95.7

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |.+++|+|++. +++++.|+.+++||+++++....+..|...+.+++|+|++ .+++++.|+.|++||+++.+.+..+..
T Consensus       187 i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~  264 (313)
T 3odt_A          187 VRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITL  264 (313)
T ss_dssp             EEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEEC
T ss_pred             EEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEec
Confidence            46889999988 8899999999999999999888899999999999999998 588999999999999999887766644


Q ss_pred             ---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           81 ---PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        81 ---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                         .+..++|+|++. +++++.|+.|++||++++
T Consensus       265 ~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~  297 (313)
T 3odt_A          265 PAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKS  297 (313)
T ss_dssp             SSSCEEEEEECTTSC-EEEEETTSCEEEEESCGG
T ss_pred             cCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCC
Confidence               456788999988 677999999999999865

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.90  E-value=4.7e-23  Score=119.17  Aligned_cols=108  Identities=19%  Similarity=0.409  Sum_probs=90.1

Q ss_pred             eeEEEcCC-----------------CCEEEEEcCCCcEEEEEcCCCC---CcEEEeeccCCeeEEEEccCC----CEEEE
Q 045566            2 LCSTWKDD-----------------GTTVFSGGCDKQVKMWPLLSGG---QPVTVAMHDAPIKEVAWIPEM----NLLAT   57 (112)
Q Consensus         2 ~~~~~~~~-----------------~~~l~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~----~~~~~   57 (112)
                      .+++|+|+                 +++|++|+.|+.|++||+....   ....+.+|...|.+++|+|++    .++++
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las  233 (316)
T 3bg1_A          154 NAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIAS  233 (316)
T ss_dssp             CCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEE
T ss_pred             ceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEE
Confidence            46788886                 4689999999999999987543   344567899999999999976    78999


Q ss_pred             eeCCCcEEEeeCCCC-------CceEEecCCCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           58 GSWDKTLKYWDTRQP-------NPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        58 ~~~~~~i~~w~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                      ++.|+.|++|++++.       +.+..+...+..++|+|++++|++++.|+.|++|+..
T Consensus       234 ~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          234 CSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             EETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             EcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            999999999998762       2334455567889999999999999999999999975

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.90  E-value=3.3e-22  Score=125.41  Aligned_cols=110  Identities=19%  Similarity=0.309  Sum_probs=95.1

Q ss_pred             CeeEEEcCC-CCEEEEEcCCCcEEEEEcCCCCC-----cEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCc
Q 045566            1 VLCSTWKDD-GTTVFSGGCDKQVKMWPLLSGGQ-----PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP   74 (112)
Q Consensus         1 v~~~~~~~~-~~~l~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~   74 (112)
                      |++++|+|+ +++|++|+.|+.|++|++.....     ...+.+|...|.+++|+|+++++++++.|+.|++||+.+++.
T Consensus       385 V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~  464 (694)
T 3dm0_A          385 VTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVS  464 (694)
T ss_dssp             EEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             eEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcc
Confidence            578999986 57999999999999999876432     346778999999999999999999999999999999998877


Q ss_pred             eEEec---CCCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           75 VHTQQ---LPDRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        75 ~~~~~---~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      +..+.   ..+.+++|+|++..+++++.|+.|++||+..
T Consensus       465 ~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~  503 (694)
T 3dm0_A          465 TRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLG  503 (694)
T ss_dssp             EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS
T ss_pred             eeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCC
Confidence            66554   3467889999999999999999999999753

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.90  E-value=8.3e-22  Score=118.43  Aligned_cols=112  Identities=6%  Similarity=-0.054  Sum_probs=96.3

Q ss_pred             CeeEEEcCCCCEE-EEEcCCCcEEEEEcC--CCCCcEEEe--eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCce
Q 045566            1 VLCSTWKDDGTTV-FSGGCDKQVKMWPLL--SGGQPVTVA--MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV   75 (112)
Q Consensus         1 v~~~~~~~~~~~l-~~~~~~~~v~~~~~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~   75 (112)
                      |.+++|+|++++| ++++.|+.|++|++.  +++....+.  .+...+.+++|+|++.++++++.++.+++|++.+.+..
T Consensus       105 v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~  184 (450)
T 2vdu_B          105 IRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEE  184 (450)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCS
T ss_pred             eEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccc
Confidence            4689999999996 899999999999998  777777665  56688999999999999999999999999998776532


Q ss_pred             -------EEecCCCeEEEEeeC---CCEEEEEeCCCcEEEEECcCCC
Q 045566           76 -------HTQQLPDRCYALTVR---YPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        76 -------~~~~~~~~~~~~~~~---~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                             ..+...+..++|+|+   +.++++++.|+.|++||+++++
T Consensus       185 ~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~  231 (450)
T 2vdu_B          185 KFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF  231 (450)
T ss_dssp             SCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTT
T ss_pred             cccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc
Confidence                   334456788999999   8899999999999999998753

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.90  E-value=9.5e-23  Score=121.78  Aligned_cols=108  Identities=15%  Similarity=0.326  Sum_probs=90.1

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCC-----------CcEEEeecc------------CCeeEEEEccCC--CEE
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG-----------QPVTVAMHD------------APIKEVAWIPEM--NLL   55 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~--~~~   55 (112)
                      |.+++|+|++++|++|+.|+.|++|++.+.+           ....+.+|.            ..|.+++|+|++  ..+
T Consensus        31 V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l  110 (447)
T 3dw8_B           31 ISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQF  110 (447)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEE
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceE
Confidence            5789999999999999999999999998766           355677887            889999999987  799


Q ss_pred             EEeeCCCcEEEeeCCCCCce-------------------------------------------EEecCCCeEEEEeeCCC
Q 045566           56 ATGSWDKTLKYWDTRQPNPV-------------------------------------------HTQQLPDRCYALTVRYP   92 (112)
Q Consensus        56 ~~~~~~~~i~~w~~~~~~~~-------------------------------------------~~~~~~~~~~~~~~~~~   92 (112)
                      ++++.|+.|++||+.+.+..                                           ..+...+..++|+|+++
T Consensus       111 ~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  190 (447)
T 3dw8_B          111 LLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYE  190 (447)
T ss_dssp             EEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSS
T ss_pred             EEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCC
Confidence            99999999999998653221                                           12334567899999999


Q ss_pred             EEEEEeCCCcEEEEECc
Q 045566           93 LMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        93 ~~~~~~~d~~v~~~d~~  109 (112)
                      +++++ .|+.|++||++
T Consensus       191 ~l~s~-~d~~i~iwd~~  206 (447)
T 3dw8_B          191 TYLSA-DDLRINLWHLE  206 (447)
T ss_dssp             EEEEE-CSSEEEEEETT
T ss_pred             EEEEe-CCCeEEEEECC
Confidence            99998 79999999987

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.90  E-value=2.7e-22  Score=128.92  Aligned_cols=109  Identities=9%  Similarity=0.118  Sum_probs=94.6

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |.+++|+|++++||+|+.|+.|++|+....+....+ .|...|.+++|+| ++++++++.|+.|++||+++++.+..+..
T Consensus        20 V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~   97 (902)
T 2oaj_A           20 PIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFV   97 (902)
T ss_dssp             EEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEEC
T ss_pred             cEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEcC
Confidence            578999999999999999999999997655443333 4778999999999 88999999999999999999887766543


Q ss_pred             --CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           81 --PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        81 --~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                        .+..++|+|+++++++|+.||.|++||++++
T Consensus        98 ~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~  130 (902)
T 2oaj_A           98 PGKITSIDTDASLDWMLIGLQNGSMIVYDIDRD  130 (902)
T ss_dssp             SSCEEEEECCTTCSEEEEEETTSCEEEEETTTT
T ss_pred             CCCEEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence              4678899999999999999999999999764

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.90  E-value=1.4e-21  Score=114.61  Aligned_cols=106  Identities=21%  Similarity=0.172  Sum_probs=88.8

Q ss_pred             EEEcCCCCEEEE--EcCCCcEEEEEcCCCC---------------C-cEEEeeccCCeeEEEEccCCCEEEEeeCCCc-E
Q 045566            4 STWKDDGTTVFS--GGCDKQVKMWPLLSGG---------------Q-PVTVAMHDAPIKEVAWIPEMNLLATGSWDKT-L   64 (112)
Q Consensus         4 ~~~~~~~~~l~~--~~~~~~v~~~~~~~~~---------------~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-i   64 (112)
                      +++++  ..++.  |+.+|.|++||+.+++               + ...+.+|...|.+++|+|++.++++++.|+. |
T Consensus       143 ~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v  220 (355)
T 3vu4_A          143 CEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTII  220 (355)
T ss_dssp             EEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEE
T ss_pred             EEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEE
Confidence            34555  45555  6889999999998755               2 5778899999999999999999999999998 9


Q ss_pred             EEeeCCCCCceEEec-----CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           65 KYWDTRQPNPVHTQQ-----LPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        65 ~~w~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      ++||+++++.+..+.     ..+..++|+|+++++++++.|+.|++||++++
T Consensus       221 ~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          221 RVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             EEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred             EEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence            999999998887665     24578999999999999999999999999764

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.90  E-value=2.1e-22  Score=123.29  Aligned_cols=106  Identities=8%  Similarity=0.041  Sum_probs=87.9

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccC-----CeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCc-
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDA-----PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP-   74 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~-   74 (112)
                      |.+++|+|+|..|++++.||.|++|+...  .+..+. |..     .+.+++|+|+|+++++|+.||.|++||+.+++. 
T Consensus        88 V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~  164 (588)
T 2j04_A           88 PRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSEN  164 (588)
T ss_dssp             EEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTT
T ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccc
Confidence            57899999999999999999999999543  334445 554     499999999999999999999999999988752 


Q ss_pred             ------eEEec-------CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           75 ------VHTQQ-------LPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        75 ------~~~~~-------~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                            +..+.       ..+..++|+|++  +++++.|+.+++||+...
T Consensus       165 ~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~  212 (588)
T 2j04_A          165 TPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSAS  212 (588)
T ss_dssp             CCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSS
T ss_pred             cccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCC
Confidence                  34431       246789999998  888999999999998764

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.2e-21  Score=115.97  Aligned_cols=110  Identities=13%  Similarity=0.229  Sum_probs=90.1

Q ss_pred             CeeEEEcCCCC-EEEEEcCCCcEEEEEc----CCCC------CcEEEee----------ccCCeeEEEEccCCCEEEEee
Q 045566            1 VLCSTWKDDGT-TVFSGGCDKQVKMWPL----LSGG------QPVTVAM----------HDAPIKEVAWIPEMNLLATGS   59 (112)
Q Consensus         1 v~~~~~~~~~~-~l~~~~~~~~v~~~~~----~~~~------~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~   59 (112)
                      |.+++|+|+++ +|++++.|+.|++|++    .+++      ....+..          |...|.+++|+|++.++++++
T Consensus        48 v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  127 (425)
T 1r5m_A           48 IVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGV  127 (425)
T ss_dssp             CSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEE
T ss_pred             eEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEe
Confidence            57899999999 9999999999999999    7777      3444433          577999999999999999999


Q ss_pred             CCCcEEEeeCCCCCceEEec---CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           60 WDKTLKYWDTRQPNPVHTQQ---LPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        60 ~~~~i~~w~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      .++.|++|| .+++.+..+.   ..+..++|+|+++.+++++.|+.+++||++++
T Consensus       128 ~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  181 (425)
T 1r5m_A          128 ENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISG  181 (425)
T ss_dssp             TTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTT
T ss_pred             CCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCC
Confidence            999999999 4555555544   34578899999999999999999999999865

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.89  E-value=1.1e-21  Score=113.57  Aligned_cols=111  Identities=20%  Similarity=0.294  Sum_probs=93.7

Q ss_pred             CeeEEEcCC-CCEEEEEcCCCcEEEEEcCCCCC-----cEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCc
Q 045566            1 VLCSTWKDD-GTTVFSGGCDKQVKMWPLLSGGQ-----PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP   74 (112)
Q Consensus         1 v~~~~~~~~-~~~l~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~   74 (112)
                      |++++|+|+ +++|++|+.|+.|++||+.+.+.     ...+.+|...|.+++|+|++.++++++.|+.+++|+......
T Consensus        41 V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~  120 (340)
T 4aow_A           41 VTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTT  120 (340)
T ss_dssp             EEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             EEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccce
Confidence            679999997 68999999999999999876543     345678999999999999999999999999999999988766


Q ss_pred             eEEecC---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           75 VHTQQL---PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        75 ~~~~~~---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      ......   ......+.+++..+++++.|+.+++||+...
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~  160 (340)
T 4aow_A          121 TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV  160 (340)
T ss_dssp             EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC
T ss_pred             eeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCC
Confidence            554433   3356677888999999999999999998653

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.89  E-value=7.4e-22  Score=114.07  Aligned_cols=112  Identities=13%  Similarity=0.279  Sum_probs=90.2

Q ss_pred             CeeEEEcCC--CCEEEEEcCCCcEEEEEcCCCCC----------------------------------------------
Q 045566            1 VLCSTWKDD--GTTVFSGGCDKQVKMWPLLSGGQ----------------------------------------------   32 (112)
Q Consensus         1 v~~~~~~~~--~~~l~~~~~~~~v~~~~~~~~~~----------------------------------------------   32 (112)
                      |.+++|+|+  +.++++++.|+.|++||+++.+.                                              
T Consensus       113 v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  192 (351)
T 3f3f_A          113 LYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQ  192 (351)
T ss_dssp             EEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTE
T ss_pred             eeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCC
Confidence            467899998  89999999999999999765431                                              


Q ss_pred             --------------cEEEeeccCCeeEEEEccCC----CEEEEeeCCCcEEEeeCCCC----------------------
Q 045566           33 --------------PVTVAMHDAPIKEVAWIPEM----NLLATGSWDKTLKYWDTRQP----------------------   72 (112)
Q Consensus        33 --------------~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~i~~w~~~~~----------------------   72 (112)
                                    ...+..|...|.+++|+|++    .++++++.|+.|++||++..                      
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (351)
T 3f3f_A          193 AIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADV  272 (351)
T ss_dssp             EEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------
T ss_pred             cEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccc
Confidence                          22334578899999999998    89999999999999998764                      


Q ss_pred             ------------------------CceEEec---CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           73 ------------------------NPVHTQQ---LPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        73 ------------------------~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                                              +.+..+.   ..+..++|+|+++++++++.|+.|++||+.+++
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          273 DMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN  339 (351)
T ss_dssp             ------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred             ccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence                                    2222232   245788999999999999999999999998753

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.2e-22  Score=124.39  Aligned_cols=110  Identities=14%  Similarity=0.046  Sum_probs=91.8

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCC-CcEEEeeccCCeeEE--EEccCC-CEEEEeeCCCcEEEeeCCCCCceE
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG-QPVTVAMHDAPIKEV--AWIPEM-NLLATGSWDKTLKYWDTRQPNPVH   76 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~v~~~--~~~~~~-~~~~~~~~~~~i~~w~~~~~~~~~   76 (112)
                      |.+++|+++ ..|++|+.|+.|++||++++. +...+..|...|.++  .|+|++ .++++++.|+.|++||+++.+...
T Consensus       269 v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~  347 (524)
T 2j04_B          269 ITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTK  347 (524)
T ss_dssp             EEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHC
T ss_pred             EEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccc
Confidence            468999986 489999999999999998764 445678899999999  567787 899999999999999998766443


Q ss_pred             Ee---cC--CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           77 TQ---QL--PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        77 ~~---~~--~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      .+   ..  .+..++|+|++..+++++.|+.|++||++++
T Consensus       348 ~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~  387 (524)
T 2j04_B          348 TTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA  387 (524)
T ss_dssp             EEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT
T ss_pred             ccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc
Confidence            22   21  3567899999999999999999999999875

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=1.3e-22  Score=121.78  Aligned_cols=109  Identities=10%  Similarity=0.100  Sum_probs=91.6

Q ss_pred             CeeEEEcCCCCEEE----EEcCCCcEEEEEcCCC--------CCc---EEEeeccCCeeEEEEccC-CCEEEEeeCCCcE
Q 045566            1 VLCSTWKDDGTTVF----SGGCDKQVKMWPLLSG--------GQP---VTVAMHDAPIKEVAWIPE-MNLLATGSWDKTL   64 (112)
Q Consensus         1 v~~~~~~~~~~~l~----~~~~~~~v~~~~~~~~--------~~~---~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~i   64 (112)
                      |.+++|+|++++|+    +++.|+.|++||+.+.        +..   ..+.+|...|.+++|+|+ +.++++++.|+.|
T Consensus        95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v  174 (434)
T 2oit_A           95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI  174 (434)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred             ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence            46899999999999    7889999999998654        222   233468899999999996 8899999999999


Q ss_pred             EEeeCCCCCceEEe---cCCCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           65 KYWDTRQPNPVHTQ---QLPDRCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        65 ~~w~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                      ++||+++.......   ...+.+++|+|++.++++++.|+.|++||++
T Consensus       175 ~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~  222 (434)
T 2oit_A          175 AVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT  222 (434)
T ss_dssp             EEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred             EEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence            99999887554333   3356789999999999999999999999987

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.89  E-value=2e-21  Score=115.35  Aligned_cols=109  Identities=19%  Similarity=0.260  Sum_probs=96.0

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCC-CCceEEe-
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ-PNPVHTQ-   78 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~-~~~~~~~-   78 (112)
                      |.+++|+|++++|++|+.|+.|++||+.+++....+..|...|.++.|+  +..+++++.|+.|++||++. ...+..+ 
T Consensus       137 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  214 (401)
T 4aez_A          137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQ  214 (401)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred             EEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEc
Confidence            5789999999999999999999999999999888899999999999994  67999999999999999984 3444443 


Q ss_pred             --cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           79 --QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        79 --~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                        ...+..+.|+|++.++++++.|+.|++||++++
T Consensus       215 ~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~  249 (401)
T 4aez_A          215 GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS  249 (401)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCS
T ss_pred             CCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC
Confidence              345678899999999999999999999999875

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.89  E-value=8.7e-22  Score=115.98  Aligned_cols=108  Identities=16%  Similarity=0.221  Sum_probs=93.7

Q ss_pred             CeeEEEcCCC-CEEEEEcCCCcEEEEEcCCCCCcEEEe--eccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCceE
Q 045566            1 VLCSTWKDDG-TTVFSGGCDKQVKMWPLLSGGQPVTVA--MHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNPVH   76 (112)
Q Consensus         1 v~~~~~~~~~-~~l~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~~~   76 (112)
                      |.+++|+|++ +++++|+.|+.|++||+.+++....+.  +|...|.+++|+| ++..+++++.|+.|++||+++ +.+.
T Consensus        76 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~  154 (383)
T 3ei3_B           76 VTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQ  154 (383)
T ss_dssp             EEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEE
T ss_pred             EEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceE
Confidence            5789999998 999999999999999999888776664  5899999999999 789999999999999999986 3333


Q ss_pred             Eec------CCCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           77 TQQ------LPDRCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        77 ~~~------~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                      .+.      ..+..++|+|++..+++++.|+.|++||++
T Consensus       155 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  193 (383)
T 3ei3_B          155 VFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD  193 (383)
T ss_dssp             EEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT
T ss_pred             EEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC
Confidence            332      235789999999999999999999999984

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.89  E-value=2e-22  Score=119.42  Aligned_cols=111  Identities=11%  Similarity=0.151  Sum_probs=95.4

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCC----CCCcEEEeeccCCeeEEEEccC-CCEEEEeeCCCcEEEeeCCCCC--
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLS----GGQPVTVAMHDAPIKEVAWIPE-MNLLATGSWDKTLKYWDTRQPN--   73 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~i~~w~~~~~~--   73 (112)
                      |.+++|+|++++|++++.|+.|++|++..    .+....+..|...|.+++|+|+ +.++++++.|+.|++||+++.+  
T Consensus        70 v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~  149 (416)
T 2pm9_A           70 FNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTES  149 (416)
T ss_dssp             EEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSC
T ss_pred             eEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccc
Confidence            46899999999999999999999999987    3456677889999999999997 8999999999999999998765  


Q ss_pred             ----ceE------EecCCCeEEEEeeC-CCEEEEEeCCCcEEEEECcCC
Q 045566           74 ----PVH------TQQLPDRCYALTVR-YPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        74 ----~~~------~~~~~~~~~~~~~~-~~~~~~~~~d~~v~~~d~~~~  111 (112)
                          ...      .+...+..++|+|+ +..+++++.|+.|++||++++
T Consensus       150 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~  198 (416)
T 2pm9_A          150 PSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK  198 (416)
T ss_dssp             TTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT
T ss_pred             cccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC
Confidence                222      23345678999998 789999999999999999875

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.89  E-value=1.6e-21  Score=127.92  Aligned_cols=111  Identities=26%  Similarity=0.360  Sum_probs=100.9

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEcc--CCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP--EMNLLATGSWDKTLKYWDTRQPNPVHTQ   78 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~i~~w~~~~~~~~~~~   78 (112)
                      |.+++|+|+++++++++.|+.|++||+.+++....+..|...|.+++|+|  ++..+++++.|+.|++||+++++.+..+
T Consensus       660 v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~  739 (1249)
T 3sfz_A          660 VLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM  739 (1249)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEE
T ss_pred             EEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhee
Confidence            57899999999999999999999999999999999999999999999999  5668999999999999999998877665


Q ss_pred             cC---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           79 QL---PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        79 ~~---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      ..   .+..++|+|+++.+++++.|+.|++||++++
T Consensus       740 ~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~  775 (1249)
T 3sfz_A          740 FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA  775 (1249)
T ss_dssp             CCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGT
T ss_pred             cCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCC
Confidence            44   4578899999999999999999999998764

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.89  E-value=1.7e-22  Score=117.59  Aligned_cols=112  Identities=12%  Similarity=0.181  Sum_probs=92.8

Q ss_pred             CeeEEEcC---CCCEEEEEcCCCcEEEEEcCCCCCcEEEe-----eccCCeeEEEEccCCC-EEEEeeCCCcEEEeeCCC
Q 045566            1 VLCSTWKD---DGTTVFSGGCDKQVKMWPLLSGGQPVTVA-----MHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDTRQ   71 (112)
Q Consensus         1 v~~~~~~~---~~~~l~~~~~~~~v~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~-~~~~~~~~~~i~~w~~~~   71 (112)
                      |.+++|+|   ++..+++++.|+.|++||+++.+....+.     .|...|.+++|+|++. ++++++.|+.|++||++.
T Consensus       212 v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  291 (357)
T 3i2n_A          212 VCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEY  291 (357)
T ss_dssp             EEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred             eEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence            46899999   89999999999999999998776655444     7899999999999988 899999999999999875


Q ss_pred             CCc-------------------eEEe---cCCCeEEEEeeCCCEEE-EEeCCCcEEEEECcCCC
Q 045566           72 PNP-------------------VHTQ---QLPDRCYALTVRYPLMV-VGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        72 ~~~-------------------~~~~---~~~~~~~~~~~~~~~~~-~~~~d~~v~~~d~~~~~  112 (112)
                      ...                   +..+   ...+..++|+|++++++ +++.|+.|++||+.+++
T Consensus       292 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          292 PIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             CSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred             CcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence            432                   2222   33457899999999888 79999999999998763

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.89  E-value=8.8e-23  Score=121.91  Aligned_cols=111  Identities=14%  Similarity=0.171  Sum_probs=93.1

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe-eccCCeeEEEEcc----CCCEEEEeeCCCcEEEeeCCCCCce
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA-MHDAPIKEVAWIP----EMNLLATGSWDKTLKYWDTRQPNPV   75 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~~~~~~----~~~~~~~~~~~~~i~~w~~~~~~~~   75 (112)
                      |.+++|+|++++|++|+.|+.|++||+++++....+. .|...|.+++|+|    ++.++++++.|+.|++||+++++.+
T Consensus       217 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  296 (437)
T 3gre_A          217 VSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQ  296 (437)
T ss_dssp             EEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEE
T ss_pred             eEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEE
Confidence            5789999999999999999999999999887777765 6778999996664    5779999999999999999988765


Q ss_pred             EEecC-----------------------------CCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           76 HTQQL-----------------------------PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        76 ~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      ..+..                             .+..++|+ ++.++++++.|+.|++||+++++
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~  361 (437)
T 3gre_A          297 YAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELS  361 (437)
T ss_dssp             EEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGG
T ss_pred             EEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcc
Confidence            54431                             14567787 77899999999999999998753

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.89  E-value=2.1e-21  Score=114.56  Aligned_cols=112  Identities=14%  Similarity=0.323  Sum_probs=90.8

Q ss_pred             CeeEEEcCCCC-EEEEEcCCCcEEEEEcCCCC-CcEEE---------------eeccCCeeEEEEccCCCEEEEeeCCCc
Q 045566            1 VLCSTWKDDGT-TVFSGGCDKQVKMWPLLSGG-QPVTV---------------AMHDAPIKEVAWIPEMNLLATGSWDKT   63 (112)
Q Consensus         1 v~~~~~~~~~~-~l~~~~~~~~v~~~~~~~~~-~~~~~---------------~~~~~~v~~~~~~~~~~~~~~~~~~~~   63 (112)
                      |.+++|+|+++ .+++++.|+.|++||++... ....+               ..|...|.+++|+|++.++++++.|+.
T Consensus       189 v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  268 (408)
T 4a11_B          189 ILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR  268 (408)
T ss_dssp             EEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCe
Confidence            46899999988 58999999999999998765 22332               467889999999999999999999999


Q ss_pred             EEEeeCCCCCce-----------------------------------------------EEe---cCCCeEEEEeeCCCE
Q 045566           64 LKYWDTRQPNPV-----------------------------------------------HTQ---QLPDRCYALTVRYPL   93 (112)
Q Consensus        64 i~~w~~~~~~~~-----------------------------------------------~~~---~~~~~~~~~~~~~~~   93 (112)
                      +++||+++.+..                                               ..+   ...+..++|+|++++
T Consensus       269 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~  348 (408)
T 4a11_B          269 MRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQE  348 (408)
T ss_dssp             EEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTE
T ss_pred             EEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCE
Confidence            999998765321                                               111   223467899999999


Q ss_pred             EEEEeCCCcEEEEECcCCC
Q 045566           94 MVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        94 ~~~~~~d~~v~~~d~~~~~  112 (112)
                      +++++.||.|++||+++++
T Consensus       349 l~s~~~dg~i~iw~~~~~~  367 (408)
T 4a11_B          349 LYSGSRDCNILAWVPSLYE  367 (408)
T ss_dssp             EEEEETTSCEEEEEECC--
T ss_pred             EEEECCCCeEEEEeCCCCC
Confidence            9999999999999998763

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.89  E-value=3.3e-22  Score=118.60  Aligned_cols=111  Identities=15%  Similarity=0.098  Sum_probs=89.0

Q ss_pred             CeeEEEcC--------CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCC-CEEEEeeCCCcEEEeeCCC
Q 045566            1 VLCSTWKD--------DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEM-NLLATGSWDKTLKYWDTRQ   71 (112)
Q Consensus         1 v~~~~~~~--------~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~i~~w~~~~   71 (112)
                      |.+++|+|        ++++|++|+.|++|++||+.+..+...+..|...+.+++|+|++ .++++++.|+.|++||+++
T Consensus       139 v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t  218 (393)
T 4gq1_A          139 VNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTL  218 (393)
T ss_dssp             EEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC
T ss_pred             eEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCC
Confidence            56889987        78999999999999999998888888888899999999999976 4799999999999999987


Q ss_pred             CCceEEe----------------------------cCCCeEEEEe-eCCCEEEEEeCCCcEEEEECcCC
Q 045566           72 PNPVHTQ----------------------------QLPDRCYALT-VRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        72 ~~~~~~~----------------------------~~~~~~~~~~-~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      ++.....                            ...+..+.|. +++..+++++.|+.+++||++.+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~  287 (393)
T 4gq1_A          219 NLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN  287 (393)
T ss_dssp             CC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---
T ss_pred             CcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC
Confidence            6533211                            1122455665 78999999999999999998764

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.89  E-value=8.1e-22  Score=116.72  Aligned_cols=109  Identities=16%  Similarity=0.279  Sum_probs=99.0

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |.+++|+|+++++++++.|+.|++||+.+++....+..|...+.++.|+|++ .+++++.++.|++||+++.+.+..+..
T Consensus       250 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~  328 (425)
T 1r5m_A          250 ISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIV  328 (425)
T ss_dssp             EEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             eEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEeccc
Confidence            4689999999999999999999999999988888888899999999999998 999999999999999998877766543


Q ss_pred             ---CCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           81 ---PDRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        81 ---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                         .+..++|+|++.++++++.|+.|++||+++
T Consensus       329 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~  361 (425)
T 1r5m_A          329 DGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKK  361 (425)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTSCEEEEECHH
T ss_pred             CCccEEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence               457889999999999999999999999875

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.89  E-value=6.2e-22  Score=118.27  Aligned_cols=106  Identities=11%  Similarity=0.167  Sum_probs=92.2

Q ss_pred             EcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEee--ccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC---
Q 045566            6 WKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAM--HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL---   80 (112)
Q Consensus         6 ~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~---   80 (112)
                      +++++..+++++.|+.|++||+++++.+..+..  |...|.+++|+|++.++++++.|+.|++||+++.+.+..+..   
T Consensus       178 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  257 (437)
T 3gre_A          178 VNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDH  257 (437)
T ss_dssp             ECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTC
T ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCC
Confidence            567899999999999999999999998888877  889999999999999999999999999999999888776642   


Q ss_pred             -CCeEEEEe----eCCCEEEEEeCCCcEEEEECcCC
Q 045566           81 -PDRCYALT----VRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        81 -~~~~~~~~----~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                       .+..++++    +++.++++++.|+.|++||++++
T Consensus       258 ~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~  293 (437)
T 3gre_A          258 APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG  293 (437)
T ss_dssp             EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT
T ss_pred             CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC
Confidence             23466444    45679999999999999999865

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.6e-21  Score=114.16  Aligned_cols=111  Identities=22%  Similarity=0.323  Sum_probs=94.7

Q ss_pred             CeeEEEcCC--CCEEEEEcCCCcEEEEEcCCCC--CcEEEeeccCCeeEEEEccC--CCEEEEeeCCCcEEEeeCCCCCc
Q 045566            1 VLCSTWKDD--GTTVFSGGCDKQVKMWPLLSGG--QPVTVAMHDAPIKEVAWIPE--MNLLATGSWDKTLKYWDTRQPNP   74 (112)
Q Consensus         1 v~~~~~~~~--~~~l~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~i~~w~~~~~~~   74 (112)
                      |.+++|+++  +++|++++.|+.|++||+.+++  ....+..|...+.+++|+|+  +.++++++.|+.|++||+++...
T Consensus        58 v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  137 (379)
T 3jrp_A           58 VWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT  137 (379)
T ss_dssp             EEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC
T ss_pred             EEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc
Confidence            468999986  9999999999999999998876  55667778999999999998  99999999999999999987642


Q ss_pred             e--E---EecCCCeEEEEee-------------CCCEEEEEeCCCcEEEEECcCC
Q 045566           75 V--H---TQQLPDRCYALTV-------------RYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        75 ~--~---~~~~~~~~~~~~~-------------~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      .  .   .+...+..+.|+|             ++..+++++.|+.|++||++++
T Consensus       138 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  192 (379)
T 3jrp_A          138 TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD  192 (379)
T ss_dssp             CCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETT
T ss_pred             eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCC
Confidence            2  2   2234567888998             6899999999999999998764

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.89  E-value=7.1e-22  Score=117.04  Aligned_cols=111  Identities=18%  Similarity=0.270  Sum_probs=97.5

Q ss_pred             CeeEEEcCCC-CEEEEEcCCC---cEEEEEcCCC-CCcEEEe-eccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCC
Q 045566            1 VLCSTWKDDG-TTVFSGGCDK---QVKMWPLLSG-GQPVTVA-MHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPN   73 (112)
Q Consensus         1 v~~~~~~~~~-~~l~~~~~~~---~v~~~~~~~~-~~~~~~~-~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~   73 (112)
                      |.+++|+|++ .++++++.|+   .|++||+++. .....+. .|...+.+++|+| ++.++++++.|+.|++||+++.+
T Consensus       217 v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~  296 (416)
T 2pm9_A          217 LSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAE  296 (416)
T ss_dssp             EEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCC
T ss_pred             eEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCc
Confidence            4689999987 6899999998   9999999886 4556666 7999999999999 99999999999999999999988


Q ss_pred             ceEEecC---CCeEEEEeeCC-CEEEEEeCCCcEEEEECcCC
Q 045566           74 PVHTQQL---PDRCYALTVRY-PLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        74 ~~~~~~~---~~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~  111 (112)
                      .+..+..   .+..++|+|++ .++++++.|+.|++||++++
T Consensus       297 ~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~  338 (416)
T 2pm9_A          297 QLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL  338 (416)
T ss_dssp             EEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred             cceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence            7776643   46789999998 89999999999999999865

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.89  E-value=6.1e-22  Score=115.43  Aligned_cols=109  Identities=11%  Similarity=0.186  Sum_probs=93.5

Q ss_pred             CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCcEEE---eeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceE
Q 045566            1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQPVTV---AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVH   76 (112)
Q Consensus         1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~   76 (112)
                      |.+++|+| +++.+++++.|+.|++||+.+++....+   ..|...|.+++|+|++.++++++.|+.|++||+++.+...
T Consensus       118 i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  197 (366)
T 3k26_A          118 INELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMN  197 (366)
T ss_dssp             EEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHH
T ss_pred             EEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCcccc
Confidence            57899999 8999999999999999999988887777   6789999999999999999999999999999998764321


Q ss_pred             E-------------------------------ecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           77 T-------------------------------QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        77 ~-------------------------------~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      .                               +...+..+.|+  ++++++++.|+.|++||++++
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~  261 (366)
T 3k26_A          198 AIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKM  261 (366)
T ss_dssp             HHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESST
T ss_pred             ccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCc
Confidence            1                               33345667776  789999999999999998765

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1e-22  Score=124.64  Aligned_cols=110  Identities=16%  Similarity=0.195  Sum_probs=93.4

Q ss_pred             CeeE--EEcCCC-CEEEEEcCCCcEEEEEcCCCCCcEEEeeccC--CeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCce
Q 045566            1 VLCS--TWKDDG-TTVFSGGCDKQVKMWPLLSGGQPVTVAMHDA--PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV   75 (112)
Q Consensus         1 v~~~--~~~~~~-~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~   75 (112)
                      |.++  +|+|++ .+|++|+.|++|++||+++++....+.+|..  .+.+++|+|++..+++++.|+.|++||+++...+
T Consensus       311 V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~  390 (524)
T 2j04_B          311 ILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAV  390 (524)
T ss_dssp             EEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCC
T ss_pred             EEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccc
Confidence            4566  578887 8999999999999999988777767766653  4789999999999999999999999999987764


Q ss_pred             EE---ecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           76 HT---QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        76 ~~---~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      ..   +...+..++|+|+++.+++|+.|+.|++||+..
T Consensus       391 ~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          391 HPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             EEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred             eeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence            43   445678899999999999999999999999753

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.88  E-value=5.2e-22  Score=125.67  Aligned_cols=111  Identities=21%  Similarity=0.274  Sum_probs=98.7

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC-ceEEe-
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN-PVHTQ-   78 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~-~~~~~-   78 (112)
                      |.+++|+|++++|++++.|+.|++|++.+++....+..|...|.+++|+|+++.+++++.|+.|++||+.+.. ....+ 
T Consensus        58 v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~  137 (814)
T 3mkq_A           58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE  137 (814)
T ss_dssp             EEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEE
T ss_pred             EEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEc
Confidence            4689999999999999999999999999999888899999999999999999999999999999999998763 33333 


Q ss_pred             --cCCCeEEEEee-CCCEEEEEeCCCcEEEEECcCC
Q 045566           79 --QLPDRCYALTV-RYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        79 --~~~~~~~~~~~-~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                        ...+..++|+| ++..+++++.|+.|++||++++
T Consensus       138 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~  173 (814)
T 3mkq_A          138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS  173 (814)
T ss_dssp             CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCS
T ss_pred             CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence              34567889999 7889999999999999998765

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.88  E-value=1.1e-21  Score=114.11  Aligned_cols=111  Identities=23%  Similarity=0.348  Sum_probs=93.3

Q ss_pred             CeeEEEcCC---CCEEEEEcCCCcEEEEEcCCCC-CcEEEeeccCCeeEEEE------ccCCCEEEEeeCCCcEEEeeCC
Q 045566            1 VLCSTWKDD---GTTVFSGGCDKQVKMWPLLSGG-QPVTVAMHDAPIKEVAW------IPEMNLLATGSWDKTLKYWDTR   70 (112)
Q Consensus         1 v~~~~~~~~---~~~l~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~v~~~~~------~~~~~~~~~~~~~~~i~~w~~~   70 (112)
                      |.+++|+|+   ++++++++.|+.|++||+.+++ ....+..|...|.++.|      +|++.++++++.|+.|++||++
T Consensus        68 v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~  147 (357)
T 3i2n_A           68 IKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPR  147 (357)
T ss_dssp             EEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTT
T ss_pred             EEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCC
Confidence            468999998   6999999999999999999888 77888899999999955      6789999999999999999998


Q ss_pred             CCC-ceEEecC-------CCeEEE----EeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           71 QPN-PVHTQQL-------PDRCYA----LTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        71 ~~~-~~~~~~~-------~~~~~~----~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      +.+ .+..+..       .+..+.    |++++.++++++.|+.|++||++++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  200 (357)
T 3i2n_A          148 QKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM  200 (357)
T ss_dssp             SCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT
T ss_pred             CCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC
Confidence            876 5555532       334455    6689999999999999999999875

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.88  E-value=6.2e-21  Score=114.70  Aligned_cols=109  Identities=16%  Similarity=0.321  Sum_probs=96.5

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec-
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ-   79 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~-   79 (112)
                      |.+++|+|+++.+++|+.|+.|++||+.+++.+..+..|...+.++.|+  +.++++++.|+.|++||+++........ 
T Consensus       313 v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~  390 (464)
T 3v7d_B          313 IYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHH  390 (464)
T ss_dssp             EEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecC
Confidence            4689999999999999999999999999999888999999999999997  5799999999999999999877665443 


Q ss_pred             -CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           80 -LPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        80 -~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                       ......++++++.++++++ |+.|++||+++++
T Consensus       391 ~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~  423 (464)
T 3v7d_B          391 TNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGK  423 (464)
T ss_dssp             TTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCC
T ss_pred             CCCccEEEEEeCCCEEEEec-CCeEEEEECCCCc
Confidence             3456788999999999988 8999999998874

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.88  E-value=7.4e-22  Score=124.94  Aligned_cols=111  Identities=17%  Similarity=0.304  Sum_probs=96.2

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCC--CCCcEEEeeccCCeeEEEEccC--CCEEEEeeCCCcEEEeeCCCCC--c
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLS--GGQPVTVAMHDAPIKEVAWIPE--MNLLATGSWDKTLKYWDTRQPN--P   74 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~i~~w~~~~~~--~   74 (112)
                      |++++|+|+++++++|+.||.|++|++..  .+....+.+|...|.+++|+|+  +..+++++.|+.|++||+.+++  .
T Consensus        12 V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~   91 (753)
T 3jro_A           12 IHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQ   91 (753)
T ss_dssp             EEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEE
T ss_pred             eEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccc
Confidence            57899999999999999999999999873  4455677889999999999987  9999999999999999998875  3


Q ss_pred             eEEe---cCCCeEEEEeeC--CCEEEEEeCCCcEEEEECcCC
Q 045566           75 VHTQ---QLPDRCYALTVR--YPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        75 ~~~~---~~~~~~~~~~~~--~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      +...   ...+..+.|+|+  +..+++++.|+.|++||++++
T Consensus        92 ~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~  133 (753)
T 3jro_A           92 IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN  133 (753)
T ss_dssp             EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSS
T ss_pred             cccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecC
Confidence            3333   335678899998  999999999999999999875

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.88  E-value=3.5e-21  Score=112.59  Aligned_cols=109  Identities=19%  Similarity=0.238  Sum_probs=95.0

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcC------------------CCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLL------------------SGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDK   62 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~   62 (112)
                      |.+++|+|+++++++++.|+.+++||+.                  .++....+..|...+.+++|+|++.++++++.|+
T Consensus       145 i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  224 (372)
T 1k8k_C          145 VLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS  224 (372)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTT
T ss_pred             eeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCC
Confidence            4689999999999999999999999954                  4555666778899999999999999999999999


Q ss_pred             cEEEeeCCCCCceEEecC---CCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           63 TLKYWDTRQPNPVHTQQL---PDRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        63 ~i~~w~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      .|++||+++.+.+..+..   .+..++|+|++.+++++ .|+.|++||+++
T Consensus       225 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          225 TVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             EEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            999999998887766654   45788999999877777 999999999876

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.88  E-value=1.6e-21  Score=114.77  Aligned_cols=109  Identities=9%  Similarity=0.070  Sum_probs=82.0

Q ss_pred             eeEEEcCCCCEEEE--EcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceE---
Q 045566            2 LCSTWKDDGTTVFS--GGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVH---   76 (112)
Q Consensus         2 ~~~~~~~~~~~l~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~---   76 (112)
                      .+++|+|+|+++++  ++.|+.|++||+.+++....+. |...|.+++|+|+++++++++.++ +.+|+..+++.+.   
T Consensus       137 ~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~  214 (365)
T 4h5i_A          137 KLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKT  214 (365)
T ss_dssp             EEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEEC
T ss_pred             EEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeee
Confidence            47899999998765  4578999999999888776665 777899999999999998887655 4444443322100   


Q ss_pred             -------------------------------------------------Ee---cCCCeEEEEeeCCCEEEEEeCCCcEE
Q 045566           77 -------------------------------------------------TQ---QLPDRCYALTVRYPLMVVGTADRNLV  104 (112)
Q Consensus        77 -------------------------------------------------~~---~~~~~~~~~~~~~~~~~~~~~d~~v~  104 (112)
                                                                       .+   ...+.+++|+|++++|++|+.|+.|+
T Consensus       215 ~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~  294 (365)
T 4h5i_A          215 DFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIA  294 (365)
T ss_dssp             CCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEE
T ss_pred             cCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEE
Confidence                                                             00   01234678999999999999999999


Q ss_pred             EEECcCCC
Q 045566          105 VFNLQNPQ  112 (112)
Q Consensus       105 ~~d~~~~~  112 (112)
                      +||+++++
T Consensus       295 iwd~~~~~  302 (365)
T 4h5i_A          295 LVKLKDLS  302 (365)
T ss_dssp             EEETTTTE
T ss_pred             EEECCCCc
Confidence            99998763

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.88  E-value=1e-21  Score=113.86  Aligned_cols=109  Identities=9%  Similarity=0.031  Sum_probs=93.3

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCC---CcEEEeeccCCeeEEEEccCCC-EEEEeeCCCcEEEeeC-CCCCce
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG---QPVTVAMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDT-RQPNPV   75 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~i~~w~~-~~~~~~   75 (112)
                      |.+++|+|++++|++++.|+.|++|++..++   ....+..|...|.+++|+|++. ++++++.|+.|++||+ .+.+..
T Consensus        14 v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~   93 (342)
T 1yfq_A           14 ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQ   93 (342)
T ss_dssp             EEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEE
T ss_pred             EEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceE
Confidence            5789999999999999999999999998776   2445568899999999999999 9999999999999999 776543


Q ss_pred             E--E--ecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           76 H--T--QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        76 ~--~--~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      .  .  +...+..++|++ +..+++++.|+.|++||+++
T Consensus        94 ~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~  131 (342)
T 1yfq_A           94 ALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRN  131 (342)
T ss_dssp             ECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHH
T ss_pred             eccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccc
Confidence            2  2  333457888999 99999999999999999865

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.88  E-value=2.3e-21  Score=118.79  Aligned_cols=106  Identities=9%  Similarity=0.174  Sum_probs=86.8

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCC-------cEEE----eeccCCeeEEEEccCCCEEEEeeCCCcEEEeeC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ-------PVTV----AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT   69 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~-------~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~   69 (112)
                      |.+++|+|+|++|++|+.||+|++||+..+..       +.++    .+|...|.+++|+|++  +++++.|+.+++||+
T Consensus       132 v~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~  209 (588)
T 2j04_A          132 YHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTV  209 (588)
T ss_dssp             EEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECC
T ss_pred             EEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEEC
Confidence            46899999999999999999999999987653       3455    4567899999999999  788889999999999


Q ss_pred             CCCCce---EEe----cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           70 RQPNPV---HTQ----QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        70 ~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      .+.+..   ..+    ...+..++|+  +..+++++ ++.|++||+.++
T Consensus       210 ~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~  255 (588)
T 2j04_A          210 SASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNY  255 (588)
T ss_dssp             CSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTT
T ss_pred             CCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCC
Confidence            876632   222    3356788888  67888887 699999998865

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.88  E-value=2.1e-20  Score=111.88  Aligned_cols=111  Identities=23%  Similarity=0.442  Sum_probs=93.2

Q ss_pred             CeeEEEcCCCC-EEEEEcCCCcEEEEEcCCCCC-------cEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCC
Q 045566            1 VLCSTWKDDGT-TVFSGGCDKQVKMWPLLSGGQ-------PVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQ   71 (112)
Q Consensus         1 v~~~~~~~~~~-~l~~~~~~~~v~~~~~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~   71 (112)
                      |.+++|+|++. +|++|+.|+.|++|++.....       ...+..|...|.+++|+| ++..+++++.++.|++||+++
T Consensus       184 v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~  263 (430)
T 2xyi_A          184 GYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRN  263 (430)
T ss_dssp             CCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred             eEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence            56899999888 999999999999999987432       345667899999999999 788999999999999999987


Q ss_pred             C---CceEEe---cCCCeEEEEeeCCC-EEEEEeCCCcEEEEECcCC
Q 045566           72 P---NPVHTQ---QLPDRCYALTVRYP-LMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        72 ~---~~~~~~---~~~~~~~~~~~~~~-~~~~~~~d~~v~~~d~~~~  111 (112)
                      .   +.+..+   ...+.+++|+|++. .+++++.|+.|++||++++
T Consensus       264 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~  310 (430)
T 2xyi_A          264 NNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL  310 (430)
T ss_dssp             SCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred             CCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC
Confidence            6   344433   34567899999887 6889999999999999874

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.88  E-value=1.8e-22  Score=119.72  Aligned_cols=107  Identities=14%  Similarity=0.136  Sum_probs=87.9

Q ss_pred             EcCCCCEEEEEcCCCcEEEEEcCCCCCcE-----EEeeccCCeeEEEEcc--------CCCEEEEeeCCCcEEEeeCCCC
Q 045566            6 WKDDGTTVFSGGCDKQVKMWPLLSGGQPV-----TVAMHDAPIKEVAWIP--------EMNLLATGSWDKTLKYWDTRQP   72 (112)
Q Consensus         6 ~~~~~~~l~~~~~~~~v~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~--------~~~~~~~~~~~~~i~~w~~~~~   72 (112)
                      +.+++.++++++.|++|++||...++...     .+.+|.+.|.+++|+|        +++++++++.|++|++||+++.
T Consensus        97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~  176 (393)
T 4gq1_A           97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE  176 (393)
T ss_dssp             CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT
T ss_pred             cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC
Confidence            34466789999999999999988765432     2467999999999997        7889999999999999999876


Q ss_pred             CceEE---ecCCCeEEEEeeCCC-EEEEEeCCCcEEEEECcCCC
Q 045566           73 NPVHT---QQLPDRCYALTVRYP-LMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        73 ~~~~~---~~~~~~~~~~~~~~~-~~~~~~~d~~v~~~d~~~~~  112 (112)
                      .++..   +...+..++|+|++. ++++++.|+.|++||+++++
T Consensus       177 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~  220 (393)
T 4gq1_A          177 GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNL  220 (393)
T ss_dssp             EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC
T ss_pred             ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCc
Confidence            65433   344667899999874 79999999999999998763

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.88  E-value=2.2e-20  Score=107.28  Aligned_cols=108  Identities=20%  Similarity=0.326  Sum_probs=92.0

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe--eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA--MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      ++++|++++ .|++|. |++|++||+.+++....+.  .|...|.+++|+|+++++++|+.|+.|++|++++++.+..+.
T Consensus        29 ~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~  106 (318)
T 4ggc_A           29 NLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT  106 (318)
T ss_dssp             BCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             eEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEec
Confidence            568999876 777665 8999999999998877664  577789999999999999999999999999999998887776


Q ss_pred             CC-CeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           80 LP-DRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        80 ~~-~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      .+ ....++.+++..+++++.++.+++|+....
T Consensus       107 ~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~  139 (318)
T 4ggc_A          107 SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVA  139 (318)
T ss_dssp             CCSSCEEEEEEETTEEEEEETTSEEEEEETTSS
T ss_pred             CccceEEEeecCCCEEEEEecCCceEeeecCCC
Confidence            54 355677888999999999999999987654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.88  E-value=2.2e-20  Score=111.47  Aligned_cols=108  Identities=20%  Similarity=0.327  Sum_probs=91.9

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe--eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA--MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      +.++|+++ +.|++|. |++|++||..+++....+.  .|...|++++|+|++.++++|+.|+.|++||+++++.+..+.
T Consensus       109 ~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~  186 (420)
T 4gga_A          109 NLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT  186 (420)
T ss_dssp             BCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             eeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEe
Confidence            56899975 5777775 8999999999988776554  567789999999999999999999999999999998887776


Q ss_pred             CC-CeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           80 LP-DRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        80 ~~-~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      .+ ....++.+++..+++++.|+.+++||.+..
T Consensus       187 ~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~  219 (420)
T 4gga_A          187 SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVA  219 (420)
T ss_dssp             CCSSCEEEEEEETTEEEEEETTSEEEEEETTSS
T ss_pred             CCCCceEEEeeCCCEEEEEeCCCceeEeeeccc
Confidence            54 355677788999999999999999998753

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.87  E-value=1.4e-20  Score=109.72  Aligned_cols=112  Identities=13%  Similarity=0.253  Sum_probs=98.9

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCC-CCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLS-GGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      +.+++|+|+++.+++++.|+.|++||+.+ .+....+..|...+.+++|+|++.++++++.|+.|++||+++.+.+..+.
T Consensus       178 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  257 (369)
T 3zwl_B          178 ATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE  257 (369)
T ss_dssp             EEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             eeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec
Confidence            36789999999999999999999999988 56666778899999999999999999999999999999999988776664


Q ss_pred             C--CCeEEEEeeCCCEEEEEeCCC--------------cEEEEECcCCC
Q 045566           80 L--PDRCYALTVRYPLMVVGTADR--------------NLVVFNLQNPQ  112 (112)
Q Consensus        80 ~--~~~~~~~~~~~~~~~~~~~d~--------------~v~~~d~~~~~  112 (112)
                      .  ....+.|+|++..+++++.++              .+++||+++++
T Consensus       258 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  306 (369)
T 3zwl_B          258 TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE  306 (369)
T ss_dssp             CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCC
T ss_pred             CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCc
Confidence            3  457889999999999999988              79999987653

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.87  E-value=4e-21  Score=114.04  Aligned_cols=111  Identities=30%  Similarity=0.501  Sum_probs=96.2

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCC-CEEEEee--CCCcEEEeeCCCCCceEE
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEM-NLLATGS--WDKTLKYWDTRQPNPVHT   77 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~--~~~~i~~w~~~~~~~~~~   77 (112)
                      |.+++|+|+++++++++.|+.|++||+.+++....+..|...|.+++|+|++ ..+++++  .|+.|++||+++++.+..
T Consensus       220 v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~  299 (401)
T 4aez_A          220 VCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNT  299 (401)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEE
T ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEE
Confidence            4689999999999999999999999999988888888899999999999965 5666654  799999999999888776


Q ss_pred             ecC--CCeEEEEeeCCCEEEEEe--CCCcEEEEECcCC
Q 045566           78 QQL--PDRCYALTVRYPLMVVGT--ADRNLVVFNLQNP  111 (112)
Q Consensus        78 ~~~--~~~~~~~~~~~~~~~~~~--~d~~v~~~d~~~~  111 (112)
                      +..  .+..++|+++++.+++++  .|+.|++||++++
T Consensus       300 ~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~  337 (401)
T 4aez_A          300 VDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS  337 (401)
T ss_dssp             EECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT
T ss_pred             EeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc
Confidence            644  457889999999999954  8999999998764

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.87  E-value=4.2e-21  Score=114.94  Aligned_cols=111  Identities=15%  Similarity=0.211  Sum_probs=93.8

Q ss_pred             CeeEEEcCC-CCEEEEEcCCCcEEEEEcCC----------CCCcEEEeeccCCeeEEEEccCCC-EEEEeeCCCcEEEee
Q 045566            1 VLCSTWKDD-GTTVFSGGCDKQVKMWPLLS----------GGQPVTVAMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWD   68 (112)
Q Consensus         1 v~~~~~~~~-~~~l~~~~~~~~v~~~~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~i~~w~   68 (112)
                      |++++|+|+ +.++++++.++.|++|++..          ......+..|...+.+++|+|++. ++++++.|+.|++|+
T Consensus       131 v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd  210 (430)
T 2xyi_A          131 VNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWD  210 (430)
T ss_dssp             CSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEE
T ss_pred             EEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEe
Confidence            578999997 67999999999999999976          566778889999999999999888 999999999999999


Q ss_pred             CCCCCc-------eEE---ecCCCeEEEEee-CCCEEEEEeCCCcEEEEECcCC
Q 045566           69 TRQPNP-------VHT---QQLPDRCYALTV-RYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        69 ~~~~~~-------~~~---~~~~~~~~~~~~-~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      +.....       ...   +...+..++|+| ++..+++++.|+.|++||++++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~  264 (430)
T 2xyi_A          211 INATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNN  264 (430)
T ss_dssp             TTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCS
T ss_pred             CCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence            987322       122   233467889999 6778999999999999999875

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.87  E-value=1.1e-20  Score=116.34  Aligned_cols=110  Identities=12%  Similarity=0.112  Sum_probs=98.5

Q ss_pred             CeeEEEcCCCC-EEEEEcCCCcEEEEEcCCCCCcEEEeeccC---CeeEEEEccC-CCEEEEeeCCCcEEEeeCCCCCce
Q 045566            1 VLCSTWKDDGT-TVFSGGCDKQVKMWPLLSGGQPVTVAMHDA---PIKEVAWIPE-MNLLATGSWDKTLKYWDTRQPNPV   75 (112)
Q Consensus         1 v~~~~~~~~~~-~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~~~~~~~~~~i~~w~~~~~~~~   75 (112)
                      |.+++|+|+++ .+++++.|+.+++||..+.+....+..|..   .|.+++|+|+ +.++++++.|+.|++||+++++.+
T Consensus       163 v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~  242 (615)
T 1pgu_A          163 INACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL  242 (615)
T ss_dssp             EEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEE
T ss_pred             EEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEe
Confidence            46899999998 899999999999999998888888888888   9999999999 999999999999999999998877


Q ss_pred             EEe-c------CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           76 HTQ-Q------LPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        76 ~~~-~------~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      ..+ .      ..+..+.|+ ++..+++++.|+.|++||++++
T Consensus       243 ~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~  284 (615)
T 1pgu_A          243 KYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS  284 (615)
T ss_dssp             EECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT
T ss_pred             EEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC
Confidence            766 2      234678888 9999999999999999999875

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.87  E-value=1.7e-20  Score=110.67  Aligned_cols=112  Identities=21%  Similarity=0.399  Sum_probs=94.4

Q ss_pred             CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCcEEEe-------------eccCCeeEEEEcc-CCCEEEEeeCCCcEE
Q 045566            1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQPVTVA-------------MHDAPIKEVAWIP-EMNLLATGSWDKTLK   65 (112)
Q Consensus         1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~-------------~~~~~v~~~~~~~-~~~~~~~~~~~~~i~   65 (112)
                      |.+++|+| ++++|++++.|+.|++|++.+++....+.             .|...|.+++|+| ++.++++++.|+.|+
T Consensus        46 v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~  125 (408)
T 4a11_B           46 INTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLK  125 (408)
T ss_dssp             EEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEE
T ss_pred             EEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEE
Confidence            57899999 99999999999999999998876654432             4889999999999 788999999999999


Q ss_pred             EeeCCCCCceEEecC--CCeEEEEeeC---CCEEEEEeCCCcEEEEECcCCC
Q 045566           66 YWDTRQPNPVHTQQL--PDRCYALTVR---YPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        66 ~w~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      +||+.+.+....+..  ....+.+.+.   +..+++++.|+.|++||+++++
T Consensus       126 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  177 (408)
T 4a11_B          126 VWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS  177 (408)
T ss_dssp             EEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC
T ss_pred             EeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc
Confidence            999998877666544  4456777764   4599999999999999998763

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.87  E-value=1.6e-20  Score=109.42  Aligned_cols=110  Identities=52%  Similarity=1.006  Sum_probs=98.5

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEE--ccCCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAW--IPEMNLLATGSWDKTLKYWDTRQPNPVHTQ   78 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~   78 (112)
                      |.+++|+|++++|++++.|+.|++||+.+++... +..|...|.+++|  ++++.++++++.|+.|++||+++.+.+..+
T Consensus        89 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  167 (368)
T 3mmy_A           89 VLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVL  167 (368)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEE
T ss_pred             EEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEE
Confidence            5689999999999999999999999998776544 5679999999999  889999999999999999999999888888


Q ss_pred             cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           79 QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      ..+....++.+....+++++.++.+.+||++..
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  200 (368)
T 3mmy_A          168 QLPERCYCADVIYPMAVVATAERGLIVYQLENQ  200 (368)
T ss_dssp             ECSSCEEEEEEETTEEEEEEGGGCEEEEECSSS
T ss_pred             ecCCCceEEEecCCeeEEEeCCCcEEEEEeccc
Confidence            877777788888889999999999999998764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.87  E-value=2.5e-20  Score=112.10  Aligned_cols=108  Identities=19%  Similarity=0.226  Sum_probs=93.8

Q ss_pred             EEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCC-e
Q 045566            5 TWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD-R   83 (112)
Q Consensus         5 ~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~-~   83 (112)
                      +++++++.+++++.|+.|++||+.+++....+..|...+.+++|+|++..+++++.|+.|++||+++++.+..+..+. .
T Consensus       275 ~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~  354 (464)
T 3v7d_B          275 TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL  354 (464)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCc
Confidence            456788999999999999999999988888888999999999999999999999999999999999988887775533 2


Q ss_pred             EEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           84 CYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        84 ~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      ..++..++.++++++.|+.|++||+++++
T Consensus       355 v~~~~~~~~~l~s~s~dg~v~vwd~~~~~  383 (464)
T 3v7d_B          355 VGLLRLSDKFLVSAAADGSIRGWDANDYS  383 (464)
T ss_dssp             EEEEEECSSEEEEEETTSEEEEEETTTCC
T ss_pred             EEEEEEcCCEEEEEeCCCcEEEEECCCCc
Confidence            33344457899999999999999998753

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.86  E-value=2e-20  Score=118.44  Aligned_cols=111  Identities=22%  Similarity=0.323  Sum_probs=94.6

Q ss_pred             CeeEEEcCC--CCEEEEEcCCCcEEEEEcCCCC--CcEEEeeccCCeeEEEEccC--CCEEEEeeCCCcEEEeeCCCCCc
Q 045566            1 VLCSTWKDD--GTTVFSGGCDKQVKMWPLLSGG--QPVTVAMHDAPIKEVAWIPE--MNLLATGSWDKTLKYWDTRQPNP   74 (112)
Q Consensus         1 v~~~~~~~~--~~~l~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~i~~w~~~~~~~   74 (112)
                      |.+++|+|+  ++++++|+.||.|++||+.+++  ....+..|...|.+++|+|+  +..+++++.|+.|++||+++...
T Consensus        56 V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~  135 (753)
T 3jro_A           56 VWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT  135 (753)
T ss_dssp             EEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC
T ss_pred             eEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC
Confidence            578999987  9999999999999999998876  55667789999999999998  99999999999999999987632


Q ss_pred             e--E---EecCCCeEEEEee-------------CCCEEEEEeCCCcEEEEECcCC
Q 045566           75 V--H---TQQLPDRCYALTV-------------RYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        75 ~--~---~~~~~~~~~~~~~-------------~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      .  .   .+...+..+.|+|             ++..+++++.||.|++||++++
T Consensus       136 ~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~  190 (753)
T 3jro_A          136 TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD  190 (753)
T ss_dssp             CCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETT
T ss_pred             cceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCC
Confidence            2  2   2234567888888             5889999999999999998865

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.86  E-value=5.6e-20  Score=106.57  Aligned_cols=109  Identities=17%  Similarity=0.166  Sum_probs=91.2

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCC-CCCc--EEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCC----
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLS-GGQP--VTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQP----   72 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~-~~~~--~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~----   72 (112)
                      |.+++|+|++  +++++.++.|++||++. ....  .....+...+.+++|+| ++..+++++.++.+++|+++..    
T Consensus       153 v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~  230 (342)
T 1yfq_A          153 IFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDY  230 (342)
T ss_dssp             EEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCST
T ss_pred             eEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccc
Confidence            4678999877  89999999999999987 5432  23446788999999999 9999999999999999999776    


Q ss_pred             --CceEEecC------------CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           73 --NPVHTQQL------------PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        73 --~~~~~~~~------------~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                        +....+..            .+..++|+|+++++++++.|+.|++||++++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  283 (342)
T 1yfq_A          231 NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR  283 (342)
T ss_dssp             TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred             ccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH
Confidence              54444432            4568899999999999999999999999875

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.86  E-value=6.3e-20  Score=109.51  Aligned_cols=109  Identities=17%  Similarity=0.264  Sum_probs=94.8

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCc-eEEe-
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP-VHTQ-   78 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~-~~~~-   78 (112)
                      |++++|+|+|++|++|+.|+.|++||+.+++.+..+.+|...+.++.++  +..+++++.|+.+.+||.+.... +..+ 
T Consensus       150 V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~  227 (420)
T 4gga_A          150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLS  227 (420)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEec
Confidence            5799999999999999999999999999999988999999999988775  67999999999999999887543 3333 


Q ss_pred             --cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           79 --QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        79 --~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                        ......+.+.+++..+++++.|+.+++||.+++
T Consensus       228 ~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~  262 (420)
T 4gga_A          228 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG  262 (420)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCC
T ss_pred             ccccceeeeeecCCCCeeeeeeccccceEEeeccc
Confidence              334567888999999999999999999998765

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.85  E-value=2.1e-19  Score=107.60  Aligned_cols=105  Identities=21%  Similarity=0.347  Sum_probs=90.5

Q ss_pred             EEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCC-e
Q 045566            5 TWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD-R   83 (112)
Q Consensus         5 ~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~-~   83 (112)
                      ++.++++++++|+.|+.|++||..+++....+.+|...|.+++|  ++..+++|+.|+.|++||+.+++.+..+..+. .
T Consensus       138 ~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~  215 (435)
T 1p22_A          138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEA  215 (435)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSC
T ss_pred             EEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCc
Confidence            45558999999999999999999999988899999999999998  78899999999999999999998887775433 3


Q ss_pred             EEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           84 CYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        84 ~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      ..++..++..+++++.|+.|++||++++
T Consensus       216 v~~l~~~~~~l~s~s~dg~i~vwd~~~~  243 (435)
T 1p22_A          216 VLHLRFNNGMMVTCSKDRSIAVWDMASP  243 (435)
T ss_dssp             EEEEECCTTEEEEEETTSCEEEEECSSS
T ss_pred             EEEEEEcCCEEEEeeCCCcEEEEeCCCC
Confidence            3444456779999999999999999865

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.84  E-value=2.1e-19  Score=102.94  Aligned_cols=107  Identities=19%  Similarity=0.149  Sum_probs=88.6

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCC---CceEE
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP---NPVHT   77 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~---~~~~~   77 (112)
                      |.+++| |+++++++++.|+.|++||+.+++....+..|...+.+++|+|++.++++++.|+.+++|++...   +.+..
T Consensus        21 v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~   99 (313)
T 3odt_A           21 VRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYT   99 (313)
T ss_dssp             EEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CE
T ss_pred             cEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccc
Confidence            578999 89999999999999999999888777888889999999999999999999999999999998764   33333


Q ss_pred             ecCC-CeEEEEeeCCCEEEEEeCCCcEEEEEC
Q 045566           78 QQLP-DRCYALTVRYPLMVVGTADRNLVVFNL  108 (112)
Q Consensus        78 ~~~~-~~~~~~~~~~~~~~~~~~d~~v~~~d~  108 (112)
                      +..+ ....++.+++..+++++.|+.|++||.
T Consensus       100 ~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~  131 (313)
T 3odt_A          100 LIGHQGNVCSLSFQDGVVISGSWDKTAKVWKE  131 (313)
T ss_dssp             ECCCSSCEEEEEEETTEEEEEETTSEEEEEET
T ss_pred             hhhcccCEEEEEecCCEEEEEeCCCCEEEEcC
Confidence            3322 223334447889999999999999983

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.84  E-value=5e-19  Score=101.64  Aligned_cols=110  Identities=16%  Similarity=0.278  Sum_probs=93.1

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCc-eEEe-
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP-VHTQ-   78 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~-~~~~-   78 (112)
                      |.+++|+|+++++++|+.|+.|++|++.+++.+..+..|...+.++.+  ++..+++++.++.+.+|+...... +..+ 
T Consensus        70 V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~  147 (318)
T 4ggc_A           70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLS  147 (318)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEc
Confidence            578999999999999999999999999999998888889888776555  567899999999999999877643 3333 


Q ss_pred             --cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           79 --QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        79 --~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                        ........+.++++++++++.|+.|++||+++++
T Consensus       148 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  183 (318)
T 4ggc_A          148 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE  183 (318)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBT
T ss_pred             CccCceEEEEEcCCCCEEEEEecCcceeEEECCCCc
Confidence              3345677888999999999999999999998753

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.83  E-value=1.1e-18  Score=104.71  Aligned_cols=106  Identities=23%  Similarity=0.416  Sum_probs=77.4

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCC
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP   81 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~   81 (112)
                      .+++|  +++.+++++.|+.|++||+.+++....+..|...+.++.|  ++..+++++.|+.|++||+++++.+..+..+
T Consensus       243 ~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  318 (445)
T 2ovr_B          243 RCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH  318 (445)
T ss_dssp             EEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             EEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCC
Confidence            35555  5677777777888888887777777777777777888777  6777888888888888888777776666543


Q ss_pred             C-eEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           82 D-RCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        82 ~-~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      . ...++.+++..+++++.|+.|++||++++
T Consensus       319 ~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~  349 (445)
T 2ovr_B          319 QSLTSGMELKDNILVSGNADSTVKIWDIKTG  349 (445)
T ss_dssp             CSCEEEEEEETTEEEEEETTSCEEEEETTTC
T ss_pred             cccEEEEEEeCCEEEEEeCCCeEEEEECCCC
Confidence            2 34455566778888888888888887765

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.83  E-value=6e-19  Score=105.65  Aligned_cols=105  Identities=19%  Similarity=0.285  Sum_probs=90.0

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCC
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP   81 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~   81 (112)
                      .+++|  +++.+++|+.|+.|++||+.+++.+..+..|...+.++.++  +..+++++.|+.|++||+++++.+..+..+
T Consensus       260 ~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h  335 (435)
T 1p22_A          260 NVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGH  335 (435)
T ss_dssp             EEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             EEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCC
Confidence            45666  78899999999999999999999988999999999999984  679999999999999999999888777653


Q ss_pred             C-eEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           82 D-RCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        82 ~-~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      . ...++..++..+++++.||.|++||+++
T Consensus       336 ~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~  365 (435)
T 1p22_A          336 EELVRCIRFDNKRIVSGAYDGKIKVWDLVA  365 (435)
T ss_dssp             SSCEEEEECCSSEEEEEETTSCEEEEEHHH
T ss_pred             cCcEEEEEecCCEEEEEeCCCcEEEEECCC
Confidence            3 3334445889999999999999999864

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.83  E-value=3.1e-19  Score=103.94  Aligned_cols=94  Identities=13%  Similarity=0.141  Sum_probs=75.5

Q ss_pred             CCCcEEEEEcCC-CCCcEEEeeccCCeeEEEEcc---CCCEEEEeeCCCcEEEeeCCCCCceEEecCC------CeEEEE
Q 045566           18 CDKQVKMWPLLS-GGQPVTVAMHDAPIKEVAWIP---EMNLLATGSWDKTLKYWDTRQPNPVHTQQLP------DRCYAL   87 (112)
Q Consensus        18 ~~~~v~~~~~~~-~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~------~~~~~~   87 (112)
                      .|+.|++|++.. ++.+..+..|...+..++|++   ++..+++++.|++|++||+++++.++.+..+      +...+|
T Consensus       155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vaf  234 (356)
T 2w18_A          155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAY  234 (356)
T ss_dssp             TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEE
T ss_pred             CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEE
Confidence            388999999844 666677788888899999998   7799999999999999999999988887532      245689


Q ss_pred             eeCCCEE------------EEEeCCCcEEEEECcCC
Q 045566           88 TVRYPLM------------VVGTADRNLVVFNLQNP  111 (112)
Q Consensus        88 ~~~~~~~------------~~~~~d~~v~~~d~~~~  111 (112)
                      +|++..+            ++|+.|+++++||..++
T Consensus       235 SpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg  270 (356)
T 2w18_A          235 SEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT  270 (356)
T ss_dssp             EETTEEEEEEC------------CCEEEEEEETTTT
T ss_pred             CCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCC
Confidence            9998876            56788999999998875

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.83  E-value=2.6e-18  Score=103.04  Aligned_cols=107  Identities=21%  Similarity=0.388  Sum_probs=90.7

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC-
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL-   80 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~-   80 (112)
                      .+++|  ++..+++++.|+.|++||+.+++....+..|...+.++.++  +..+++++.|+.|++||+++++.+..+.. 
T Consensus       283 ~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  358 (445)
T 2ovr_B          283 YSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGP  358 (445)
T ss_dssp             EEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECST
T ss_pred             EEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccC
Confidence            46666  78999999999999999999999888888899999888774  67999999999999999999988877753 


Q ss_pred             ---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           81 ---PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        81 ---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                         .....++.+++.++++++.||.|++||+++++
T Consensus       359 ~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~  393 (445)
T 2ovr_B          359 NKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGE  393 (445)
T ss_dssp             TSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCC
T ss_pred             CCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCc
Confidence               22344455568899999999999999998764

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.81  E-value=3e-18  Score=103.03  Aligned_cols=110  Identities=15%  Similarity=0.160  Sum_probs=85.2

Q ss_pred             CeeEEEcCC-CCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566            1 VLCSTWKDD-GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         1 v~~~~~~~~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      |.+++|+|+ +..|++++.|+.|++||++++........|...+.+++|+|++.++++++.|+.|++||.+ .+....+.
T Consensus       152 V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~  230 (434)
T 2oit_A          152 VIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIP  230 (434)
T ss_dssp             EEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEEC
T ss_pred             eEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cccccccc
Confidence            468999997 8899999999999999998876555566788899999999999999999999999999998 44333332


Q ss_pred             C----------CCeEEEEeeCCCEEEE-EeCCC------cEEEEECcCC
Q 045566           80 L----------PDRCYALTVRYPLMVV-GTADR------NLVVFNLQNP  111 (112)
Q Consensus        80 ~----------~~~~~~~~~~~~~~~~-~~~d~------~v~~~d~~~~  111 (112)
                      .          .+..+.|++++.++++ .+.+|      .+++||+++.
T Consensus       231 ~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          231 CPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             CCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             CCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            1          2346677777666544 33443      2889998754

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.80  E-value=5.2e-18  Score=100.06  Aligned_cols=110  Identities=20%  Similarity=0.156  Sum_probs=89.7

Q ss_pred             CeeEEEcCCCCEE-EEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEE-EeeCCCcEEEeeCCCCCceEEe
Q 045566            1 VLCSTWKDDGTTV-FSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA-TGSWDKTLKYWDTRQPNPVHTQ   78 (112)
Q Consensus         1 v~~~~~~~~~~~l-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~i~~w~~~~~~~~~~~   78 (112)
                      +.+++|+|+++.+ ++++.++.|++||+.+++....+..+. .+.+++|+|+++.++ ++..++.|++||+.+++.+..+
T Consensus        34 ~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~  112 (391)
T 1l0q_A           34 PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV  112 (391)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEE
Confidence            3588999999976 677789999999998888777666444 899999999999775 4556799999999988776655


Q ss_pred             cC--CCeEEEEeeCCCEE-EEEeCCCcEEEEECcCC
Q 045566           79 QL--PDRCYALTVRYPLM-VVGTADRNLVVFNLQNP  111 (112)
Q Consensus        79 ~~--~~~~~~~~~~~~~~-~~~~~d~~v~~~d~~~~  111 (112)
                      ..  ....++|+++++.+ ++++.++.|++||++++
T Consensus       113 ~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~  148 (391)
T 1l0q_A          113 KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK  148 (391)
T ss_dssp             ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             eCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence            44  34678899999877 67777999999999875

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.80  E-value=4.3e-18  Score=101.53  Aligned_cols=111  Identities=12%  Similarity=0.084  Sum_probs=94.7

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEE-EeeCCCcEEEeeCCCCCceEEec
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA-TGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      |.+++|+|+++.+++++.|+.|++||+.+++....+..+...+.+++|+|++..++ ++..++.|++||+++++.+..+.
T Consensus       172 v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~  251 (433)
T 3bws_A          172 VETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD  251 (433)
T ss_dssp             EEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC
T ss_pred             eeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec
Confidence            35789999999999999999999999998888888888888999999999998775 55579999999999887766655


Q ss_pred             CC--CeEEEEeeCCCEEEEEe--------CCCcEEEEECcCC
Q 045566           80 LP--DRCYALTVRYPLMVVGT--------ADRNLVVFNLQNP  111 (112)
Q Consensus        80 ~~--~~~~~~~~~~~~~~~~~--------~d~~v~~~d~~~~  111 (112)
                      ..  ...++++|+++.+++++        .|+.|++||++++
T Consensus       252 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~  293 (433)
T 3bws_A          252 KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE  293 (433)
T ss_dssp             CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT
T ss_pred             CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC
Confidence            43  35788899999998887        4889999999865

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.78  E-value=4.8e-18  Score=101.34  Aligned_cols=110  Identities=9%  Similarity=0.030  Sum_probs=91.6

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEE-----EeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceE
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVT-----VAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVH   76 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~   76 (112)
                      .+++|+|++..+++++.++.|++||+.+++....     +..|...+.+++|++++..+++++.++.|++||+++.+.+.
T Consensus       126 ~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~  205 (433)
T 3bws_A          126 KSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA  205 (433)
T ss_dssp             CCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE
T ss_pred             eEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE
Confidence            4688999777888888899999999988876653     23577789999999999999999999999999999888776


Q ss_pred             EecC---CCeEEEEeeCCCEEEEEe-CCCcEEEEECcCC
Q 045566           77 TQQL---PDRCYALTVRYPLMVVGT-ADRNLVVFNLQNP  111 (112)
Q Consensus        77 ~~~~---~~~~~~~~~~~~~~~~~~-~d~~v~~~d~~~~  111 (112)
                      .+..   ....++|+|+++.+++++ .++.|++||++++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~  244 (433)
T 3bws_A          206 TVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK  244 (433)
T ss_dssp             EEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred             EEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC
Confidence            6643   346789999999886554 7899999999875

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.77  E-value=4.5e-17  Score=96.05  Aligned_cols=109  Identities=15%  Similarity=0.096  Sum_probs=89.9

Q ss_pred             eeEEEcCCCCEE-EEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEE-EEeeCCCcEEEeeCCCCCceEEec
Q 045566            2 LCSTWKDDGTTV-FSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLL-ATGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         2 ~~~~~~~~~~~l-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      .+++|+|+++.+ ++++.++.|++||+.+++....+..+ ..+.+++|+|+++.+ +++..++.|++||+++.+......
T Consensus       119 ~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~  197 (391)
T 1l0q_A          119 LGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK  197 (391)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence            578999999977 68888999999999888776666644 556899999999877 677788999999999887766554


Q ss_pred             CC--CeEEEEeeCCCEEEEEe---CCCcEEEEECcCC
Q 045566           80 LP--DRCYALTVRYPLMVVGT---ADRNLVVFNLQNP  111 (112)
Q Consensus        80 ~~--~~~~~~~~~~~~~~~~~---~d~~v~~~d~~~~  111 (112)
                      ..  ...++|+|+++.+++++   .++.|++||++++
T Consensus       198 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~  234 (391)
T 1l0q_A          198 VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN  234 (391)
T ss_dssp             CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred             cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence            43  35778999999998888   6899999999875

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.74  E-value=5.1e-16  Score=92.86  Aligned_cols=110  Identities=14%  Similarity=0.106  Sum_probs=85.0

Q ss_pred             CeeEEEcCCCCEEEEEcCCC---cEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEE-EeeCCCc--EEEeeCCCCCc
Q 045566            1 VLCSTWKDDGTTVFSGGCDK---QVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA-TGSWDKT--LKYWDTRQPNP   74 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~--i~~w~~~~~~~   74 (112)
                      |.+++|+|+|+.|+.++.++   .|++||+.+++.. .+..+...+.+++|+|+++.++ +++.++.  |++||+.+++.
T Consensus       181 v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~  259 (415)
T 2hqs_A          181 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI  259 (415)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE
T ss_pred             ceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE
Confidence            35789999999999998775   8999999877654 5666778899999999999777 6655554  99999988765


Q ss_pred             eEEe--cCCCeEEEEeeCCCEEEEEeC-CC--cEEEEECcCC
Q 045566           75 VHTQ--QLPDRCYALTVRYPLMVVGTA-DR--NLVVFNLQNP  111 (112)
Q Consensus        75 ~~~~--~~~~~~~~~~~~~~~~~~~~~-d~--~v~~~d~~~~  111 (112)
                      ....  ......+.|+|+++.++.++. ++  .|.+||+.++
T Consensus       260 ~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~  301 (415)
T 2hqs_A          260 RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG  301 (415)
T ss_dssp             EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS
T ss_pred             EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCC
Confidence            3222  223467899999998888876 44  5777788765

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.69  E-value=1.6e-15  Score=93.44  Aligned_cols=107  Identities=9%  Similarity=0.002  Sum_probs=90.1

Q ss_pred             EEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeC--CCCCceEEecCC-
Q 045566            5 TWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT--RQPNPVHTQQLP-   81 (112)
Q Consensus         5 ~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~--~~~~~~~~~~~~-   81 (112)
                      .++|++..+++++.++.|.+||..+++.+.++..... +..++|+|+++++++++.++.|.+||+  .+.+.+..+... 
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~  222 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGI  222 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCS
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCC
Confidence            4778888899999999999999999988888773333 889999999999999999999999999  777766666543 


Q ss_pred             -CeEEEEee----CCCEEEEEeC-CCcEEEEECcCCC
Q 045566           82 -DRCYALTV----RYPLMVVGTA-DRNLVVFNLQNPQ  112 (112)
Q Consensus        82 -~~~~~~~~----~~~~~~~~~~-d~~v~~~d~~~~~  112 (112)
                       ...++|+|    +++++++++. ++.|.+||..+++
T Consensus       223 ~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~  259 (543)
T 1nir_A          223 EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE  259 (543)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred             CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence             36788999    9999999885 8999999987753

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.69  E-value=5.2e-15  Score=88.54  Aligned_cols=110  Identities=15%  Similarity=0.125  Sum_probs=83.0

Q ss_pred             eeEEEcCCCCEEE-EEcCCCc--EEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeC-CC--cEEEeeCCCCCce
Q 045566            2 LCSTWKDDGTTVF-SGGCDKQ--VKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW-DK--TLKYWDTRQPNPV   75 (112)
Q Consensus         2 ~~~~~~~~~~~l~-~~~~~~~--v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~--~i~~w~~~~~~~~   75 (112)
                      .+++|+|+|+.|+ +++.++.  |.+||+.+++. ..+..+...+.+++|+|+++.++.++. ++  .|.+||+.+++..
T Consensus       226 ~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~  304 (415)
T 2hqs_A          226 GAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ  304 (415)
T ss_dssp             EEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE
T ss_pred             cCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE
Confidence            5789999999887 6666554  89999887654 566677888999999999998887765 44  5777798876543


Q ss_pred             EEec--CCCeEEEEeeCCCEEEEEeCC---CcEEEEECcCCC
Q 045566           76 HTQQ--LPDRCYALTVRYPLMVVGTAD---RNLVVFNLQNPQ  112 (112)
Q Consensus        76 ~~~~--~~~~~~~~~~~~~~~~~~~~d---~~v~~~d~~~~~  112 (112)
                      ....  .....+.|+|++++++.++.+   ..|.+||+.+++
T Consensus       305 ~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~  346 (415)
T 2hqs_A          305 RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG  346 (415)
T ss_dssp             ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC
T ss_pred             EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC
Confidence            2211  223568899999999888764   579999998763

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.68  E-value=1.5e-15  Score=95.86  Aligned_cols=109  Identities=18%  Similarity=0.135  Sum_probs=85.9

Q ss_pred             CeeEEEcCCCCEEEEEcC-CC-----cEEEEEcCCCCCcEEEeeccC------------------------CeeEEEEcc
Q 045566            1 VLCSTWKDDGTTVFSGGC-DK-----QVKMWPLLSGGQPVTVAMHDA------------------------PIKEVAWIP   50 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~-~~-----~v~~~~~~~~~~~~~~~~~~~------------------------~v~~~~~~~   50 (112)
                      +.+++|+|+|++|++++. |+     .|.+||+.+++....+..+..                        .+..++|+|
T Consensus        39 ~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Sp  118 (741)
T 2ecf_A           39 LMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSP  118 (741)
T ss_dssp             CEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECT
T ss_pred             CCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECC
Confidence            467999999999999987 87     899999988876555543322                        378999999


Q ss_pred             CCCEEEEeeCCCcEEEeeCCCC---CceE--EecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           51 EMNLLATGSWDKTLKYWDTRQP---NPVH--TQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        51 ~~~~~~~~~~~~~i~~w~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      +|+.++.++. +.|.+||+.++   +...  ........+.|+|+|+.++.++ ++.|++||+.++
T Consensus       119 Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g  182 (741)
T 2ecf_A          119 DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASG  182 (741)
T ss_dssp             TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTT
T ss_pred             CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCC
Confidence            9999988876 89999999877   3322  2223456789999999998887 458999998765

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.66  E-value=2.3e-14  Score=83.37  Aligned_cols=110  Identities=8%  Similarity=0.013  Sum_probs=87.8

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEee----ccCCeeEEEEccCCCEEEEee-CCCcEEEeeCCCCCceE
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAM----HDAPIKEVAWIPEMNLLATGS-WDKTLKYWDTRQPNPVH   76 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~-~~~~i~~w~~~~~~~~~   76 (112)
                      ..++|+|+++.+++++.++.+.+||..+++....+..    +...+..++|+|+++.++.++ .++.+.+||..+.+.+.
T Consensus       188 ~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~  267 (353)
T 3vgz_A          188 TGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILA  267 (353)
T ss_dssp             CCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred             ceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence            4678999999999999999999999988877666543    345677899999998766555 45899999999888776


Q ss_pred             EecCC-CeEEEEeeCCCEEEEEe-CCCcEEEEECcCC
Q 045566           77 TQQLP-DRCYALTVRYPLMVVGT-ADRNLVVFNLQNP  111 (112)
Q Consensus        77 ~~~~~-~~~~~~~~~~~~~~~~~-~d~~v~~~d~~~~  111 (112)
                      .+... ...+.|+++++.+++++ .++.|.+||+.++
T Consensus       268 ~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~  304 (353)
T 3vgz_A          268 KVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSY  304 (353)
T ss_dssp             EEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred             EEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence            65442 35688999999766665 6899999999875

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.65  E-value=4e-15  Score=93.94  Aligned_cols=98  Identities=9%  Similarity=0.075  Sum_probs=77.5

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCC--CcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGG--QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      .+++|+|+|++|++++. +.|.+||+.++.  ....+..+...+..++|+|+|+.++.+. ++.|++||+.+++......
T Consensus       112 ~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~  189 (741)
T 2ecf_A          112 VDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTA  189 (741)
T ss_dssp             CCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCC
T ss_pred             ceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEecc
Confidence            57899999999998886 899999998773  4445666778899999999999998886 4689999998765443322


Q ss_pred             CC-------------------CeEEEEeeCCCEEEEEeCCC
Q 045566           80 LP-------------------DRCYALTVRYPLMVVGTADR  101 (112)
Q Consensus        80 ~~-------------------~~~~~~~~~~~~~~~~~~d~  101 (112)
                      ..                   ...+.|+|+++.|+.++.|+
T Consensus       190 ~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~  230 (741)
T 2ecf_A          190 DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDE  230 (741)
T ss_dssp             CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEEC
T ss_pred             CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcC
Confidence            11                   35689999999999987765

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.65  E-value=1.6e-14  Score=84.04  Aligned_cols=111  Identities=14%  Similarity=0.009  Sum_probs=89.2

Q ss_pred             eeEEEcCCCCEEEEEc--CCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566            2 LCSTWKDDGTTVFSGG--CDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      .+++|+|+++.+++++  .++.|.+||..+++....+..+...+..+.|+|+++.++.+..++.+.+||..+.+......
T Consensus       144 ~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~  223 (353)
T 3vgz_A          144 RELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKK  223 (353)
T ss_dssp             EEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEE
T ss_pred             ceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEE
Confidence            4589999999877765  47889999998887777766455567889999999999999999999999999887766554


Q ss_pred             C-------CCeEEEEeeCCCEEEEEeC-CCcEEEEECcCCC
Q 045566           80 L-------PDRCYALTVRYPLMVVGTA-DRNLVVFNLQNPQ  112 (112)
Q Consensus        80 ~-------~~~~~~~~~~~~~~~~~~~-d~~v~~~d~~~~~  112 (112)
                      .       ....++++|+++.+++++. ++.|.+||+.+++
T Consensus       224 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~  264 (353)
T 3vgz_A          224 LLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN  264 (353)
T ss_dssp             CCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC
T ss_pred             cCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence            3       1235789999997777665 4899999998764

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.64  E-value=4.4e-15  Score=85.95  Aligned_cols=109  Identities=10%  Similarity=0.075  Sum_probs=80.9

Q ss_pred             CeeEEEcCCCCEEEEEcCC-CcEEEEEcC--CCCC--cEEEeeccCCeeEEEEccCCCEEEEee-CCCcEEEeeCC---C
Q 045566            1 VLCSTWKDDGTTVFSGGCD-KQVKMWPLL--SGGQ--PVTVAMHDAPIKEVAWIPEMNLLATGS-WDKTLKYWDTR---Q   71 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~-~~v~~~~~~--~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~i~~w~~~---~   71 (112)
                      +.+++|+|+++++++++.+ +.+.+|++.  +++.  ...+.. ...+..++|+|+++.+++++ .++.|.+||+.   .
T Consensus        40 ~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~  118 (343)
T 1ri6_A           40 VQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL-PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLP  118 (343)
T ss_dssp             CCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC-SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEE
T ss_pred             CceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc-CCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcc
Confidence            3578999999988888776 899999987  3442  223333 33788999999999776665 48889999994   2


Q ss_pred             CCceEEecC--CCeEEEEeeCCCEEEEEe-CCCcEEEEECcC
Q 045566           72 PNPVHTQQL--PDRCYALTVRYPLMVVGT-ADRNLVVFNLQN  110 (112)
Q Consensus        72 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~d~~v~~~d~~~  110 (112)
                      .+.......  ....++|+|+++.+++++ .++.|.+||+.+
T Consensus       119 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~  160 (343)
T 1ri6_A          119 VGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSD  160 (343)
T ss_dssp             EEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             ccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecC
Confidence            233333332  346788999999888877 889999999876

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.64  E-value=2.5e-14  Score=88.22  Aligned_cols=109  Identities=14%  Similarity=0.149  Sum_probs=87.5

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEc--CCCCCcEEEeeccCCeeEEEEcc----CCCEEEEee-CCCcEEEeeCCCCCc
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPL--LSGGQPVTVAMHDAPIKEVAWIP----EMNLLATGS-WDKTLKYWDTRQPNP   74 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~-~~~~i~~w~~~~~~~   74 (112)
                      ..++|+|+|+++++++.++.|.+||+  .+.+.+.++. .......++|+|    +++++++++ .++.|.+||..+.+.
T Consensus       182 ~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~  260 (543)
T 1nir_A          182 HISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP  260 (543)
T ss_dssp             EEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE
T ss_pred             ceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc
Confidence            56889999999999999999999999  6766666666 445678999999    999998887 489999999999887


Q ss_pred             eEEecC--------------CCeEEEEeeCCCE-EEEEeCCCcEEEEECcCC
Q 045566           75 VHTQQL--------------PDRCYALTVRYPL-MVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        75 ~~~~~~--------------~~~~~~~~~~~~~-~~~~~~d~~v~~~d~~~~  111 (112)
                      +..+..              ....+.+++++.. +++...++.|.+||+.++
T Consensus       261 ~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~  312 (543)
T 1nir_A          261 KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDI  312 (543)
T ss_dssp             EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTS
T ss_pred             ceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCC
Confidence            766543              2346778886654 556677899999998763

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.62  E-value=1.6e-15  Score=95.46  Aligned_cols=108  Identities=7%  Similarity=0.052  Sum_probs=85.2

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccC---CeeEEEEccCCCEEEEeeCC---------CcEEEeeC
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDA---PIKEVAWIPEMNLLATGSWD---------KTLKYWDT   69 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~---------~~i~~w~~   69 (112)
                      .+++|+|+|+++++ +.|+.+++||..+++....+..+..   .+.+++|+|+|++++++..+         +.+.+||+
T Consensus        20 ~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~   98 (723)
T 1xfd_A           20 PEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKI   98 (723)
T ss_dssp             CCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEES
T ss_pred             cccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEEC
Confidence            46789999997766 7889999999998887766665544   48999999999999988764         67889999


Q ss_pred             CCCCceEEe--cC---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           70 RQPNPVHTQ--QL---PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        70 ~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      .+++.....  ..   ......|+|+|+.++.++. +.|++||+.++
T Consensus        99 ~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g  144 (723)
T 1xfd_A           99 PHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGK  144 (723)
T ss_dssp             SSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSS
T ss_pred             CCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCC
Confidence            887652111  11   1456889999999998876 78999998765

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.62  E-value=4.5e-15  Score=93.54  Aligned_cols=107  Identities=9%  Similarity=0.102  Sum_probs=84.0

Q ss_pred             eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccC---CeeEEEEccCCCEEEEeeC---------CCcEEEeeCC
Q 045566            3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDA---PIKEVAWIPEMNLLATGSW---------DKTLKYWDTR   70 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~---------~~~i~~w~~~   70 (112)
                      +++|+|+++++++ +.|+.|++||..+++....+..+..   .+.+++|+|+|++++.++.         ++.+++||+.
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            5789999965554 4689999999988887655554433   4899999999999988766         6899999998


Q ss_pred             CCCce--EEecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           71 QPNPV--HTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        71 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      +++.+  ..+........|+|+|+.++.+. ++.|++||+.++
T Consensus        99 ~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g  140 (719)
T 1z68_A           99 NGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGD  140 (719)
T ss_dssp             TTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTS
T ss_pred             CCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCC
Confidence            87652  22334567789999999998885 779999998765

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.62  E-value=8.4e-14  Score=80.55  Aligned_cols=108  Identities=9%  Similarity=0.047  Sum_probs=82.7

Q ss_pred             eEEEcCCCCEEEEEcC-CCcEEEEEcCCCCC-cEEEeeccCCeeEEEEccCCCEEEEeeCCC---cEEEeeCCCCCceEE
Q 045566            3 CSTWKDDGTTVFSGGC-DKQVKMWPLLSGGQ-PVTVAMHDAPIKEVAWIPEMNLLATGSWDK---TLKYWDTRQPNPVHT   77 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~-~~~v~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~i~~w~~~~~~~~~~   77 (112)
                      .++|+|+++++++++. ++.|.+||..+++. ...+..+..+..+++|+|++++++++..++   .|.+||+.+.+.+..
T Consensus        44 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~  123 (331)
T 3u4y_A           44 DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIST  123 (331)
T ss_dssp             EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEE
T ss_pred             eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEE
Confidence            6789999997666554 88999999988887 566666666655599999999888655553   899999998877666


Q ss_pred             ecC--CCeEEEEeeCCCEEEEE-eCCCc-EEEEECcC
Q 045566           78 QQL--PDRCYALTVRYPLMVVG-TADRN-LVVFNLQN  110 (112)
Q Consensus        78 ~~~--~~~~~~~~~~~~~~~~~-~~d~~-v~~~d~~~  110 (112)
                      +..  ....++|+|++++++++ ..++. +.+|++..
T Consensus       124 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~  160 (331)
T 3u4y_A          124 IPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA  160 (331)
T ss_dssp             EECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred             EECCCCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence            544  33678999999866555 55578 99999764

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.61  E-value=5.8e-14  Score=79.54  Aligned_cols=110  Identities=13%  Similarity=0.190  Sum_probs=82.3

Q ss_pred             eeEEEcCCCCEEE-EEcCCCcEEEEEcCC-CCCcEEEeeccCCeeEEEEccCCCEEEEee-CCCcEEEeeCC-CCCceEE
Q 045566            2 LCSTWKDDGTTVF-SGGCDKQVKMWPLLS-GGQPVTVAMHDAPIKEVAWIPEMNLLATGS-WDKTLKYWDTR-QPNPVHT   77 (112)
Q Consensus         2 ~~~~~~~~~~~l~-~~~~~~~v~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~i~~w~~~-~~~~~~~   77 (112)
                      ..++|+|+++.++ ++..++.+.+|++.. ......+..+...+.++.|+|+++.++.++ .++.+.+|++. .......
T Consensus       132 ~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~  211 (297)
T 2ojh_A          132 YWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVER  211 (297)
T ss_dssp             EEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEE
T ss_pred             cceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEE
Confidence            4678999999877 677889999998643 334455566778899999999999877665 58899999875 3344444


Q ss_pred             ecCC---CeEEEEeeCCCEEEEEeCC-----------CcEEEEECcCC
Q 045566           78 QQLP---DRCYALTVRYPLMVVGTAD-----------RNLVVFNLQNP  111 (112)
Q Consensus        78 ~~~~---~~~~~~~~~~~~~~~~~~d-----------~~v~~~d~~~~  111 (112)
                      +...   ...+.|+|++++++.++.+           +.|.+||+.++
T Consensus       212 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~  259 (297)
T 2ojh_A          212 ITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG  259 (297)
T ss_dssp             CCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC
T ss_pred             EecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCC
Confidence            4332   3467899999998888765           56999998765

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.61  E-value=8e-14  Score=80.50  Aligned_cols=69  Identities=12%  Similarity=0.077  Sum_probs=57.0

Q ss_pred             CeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC--CCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           42 PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL--PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        42 ~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      .+..++|+|++++++++  ++.|.+||+.+.+.+..+..  ....++|+|+++++++++.++.|.+||+++++
T Consensus       242 ~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~  312 (337)
T 1pby_B          242 FYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE  312 (337)
T ss_dssp             CEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred             ceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence            34568999999988877  68999999988876655543  45678999999999999999999999998764

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.61  E-value=2.3e-14  Score=90.24  Aligned_cols=98  Identities=7%  Similarity=-0.021  Sum_probs=75.3

Q ss_pred             CeeEEEcCCCCEEEEEcCC---------CcEEEEEcCCCCCcEEEe---eccCCeeEEEEccCCCEEEEeeCCCcEEEee
Q 045566            1 VLCSTWKDDGTTVFSGGCD---------KQVKMWPLLSGGQPVTVA---MHDAPIKEVAWIPEMNLLATGSWDKTLKYWD   68 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~---------~~v~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~   68 (112)
                      |.+++|+|+|++|++++.+         +.+.+||+.+++. ..+.   .+...+..++|+|+|+.++.++. +.|++||
T Consensus        63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~  140 (723)
T 1xfd_A           63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCA  140 (723)
T ss_dssp             CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEES
T ss_pred             cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEE
Confidence            4578999999999998764         7788999987765 3333   33344888999999999988875 7899999


Q ss_pred             CCCCCceEEecC---CC------------------eEEEEeeCCCEEEEEeCC
Q 045566           69 TRQPNPVHTQQL---PD------------------RCYALTVRYPLMVVGTAD  100 (112)
Q Consensus        69 ~~~~~~~~~~~~---~~------------------~~~~~~~~~~~~~~~~~d  100 (112)
                      +.+++.......   ..                  ..+.|+|+++.|+.++.+
T Consensus       141 ~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~  193 (723)
T 1xfd_A          141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIN  193 (723)
T ss_dssp             SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEE
T ss_pred             CCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEEC
Confidence            988766544332   11                  578999999999888754

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.60  E-value=3.5e-14  Score=92.86  Aligned_cols=107  Identities=11%  Similarity=0.015  Sum_probs=87.7

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCC----------cEEEeeCCC
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDK----------TLKYWDTRQ   71 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----------~i~~w~~~~   71 (112)
                      ..++|+|+|+.|++++.++.+++||+.+++.......+...+..++|+|+|++++.++.++          .+++||+.+
T Consensus       382 ~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~  461 (1045)
T 1k32_A          382 FAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG  461 (1045)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred             eeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC
Confidence            5789999999999999999999999988877666667888899999999999998876644          899999987


Q ss_pred             CCceEEecC---CCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           72 PNPVHTQQL---PDRCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        72 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                      ++ ...+..   ....+.|+|+++.++.++.++....|+..
T Consensus       462 g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~  501 (1045)
T 1k32_A          462 RK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV  501 (1045)
T ss_dssp             TE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred             Cc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence            65 333332   23567899999999999988877777653

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.59  E-value=1.5e-14  Score=89.42  Aligned_cols=104  Identities=19%  Similarity=0.094  Sum_probs=84.7

Q ss_pred             eEEEcCCCCEEEEEcCC----CcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCC--cEEEeeCCCCCceE
Q 045566            3 CSTWKDDGTTVFSGGCD----KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDK--TLKYWDTRQPNPVH   76 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~i~~w~~~~~~~~~   76 (112)
                      +++|+|+|++++.++.+    ..|.+||+.+++. ..+..+...+..++|+|||+.++++..++  .|++||+.+++.. 
T Consensus       154 ~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~-~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-  231 (582)
T 3o4h_A          154 GFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL-RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-  231 (582)
T ss_dssp             EEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC-EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-
T ss_pred             eEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc-eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-
Confidence            57899999999988776    7799999877665 46677778889999999999999888888  8999999887765 


Q ss_pred             EecCC---CeEEE--------EeeCCCEEEEEeCCCcEEEEEC
Q 045566           77 TQQLP---DRCYA--------LTVRYPLMVVGTADRNLVVFNL  108 (112)
Q Consensus        77 ~~~~~---~~~~~--------~~~~~~~~~~~~~d~~v~~~d~  108 (112)
                      .....   .....        |+|++..+++++.++.+++|++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          232 DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            33322   12334        9999988899999999999987

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.59  E-value=3.4e-14  Score=82.46  Aligned_cols=108  Identities=10%  Similarity=0.018  Sum_probs=85.9

Q ss_pred             eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeecc-CCeeEEEEccCCCEE-EEeeCCCcEEEeeCCCCCceEEecC
Q 045566            3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHD-APIKEVAWIPEMNLL-ATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~-~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      .+++++++..+++++.++.|.+||..+++....+.... ..+..++|+|+++.+ ++...++.|.+||+.+++.+.....
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            45678888999999999999999998887766665332 256889999999865 4556789999999988876655543


Q ss_pred             C---------CeEEEEeeCCCEEEEEeCC------------CcEEEEECcC
Q 045566           81 P---------DRCYALTVRYPLMVVGTAD------------RNLVVFNLQN  110 (112)
Q Consensus        81 ~---------~~~~~~~~~~~~~~~~~~d------------~~v~~~d~~~  110 (112)
                      .         ...+.++|+++++++++.+            +.|.+||+.+
T Consensus        84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~  134 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD  134 (349)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG
T ss_pred             ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCC
Confidence            2         4678999999999998865            8999999876

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.59  E-value=9.9e-14  Score=80.12  Aligned_cols=108  Identities=11%  Similarity=0.042  Sum_probs=84.3

Q ss_pred             eeEEEcCCCCEE-EEEcCCCcEEEEEcCCCCCcEEEeec-----cCCeeEEEEccCCCEEEEee------------CCCc
Q 045566            2 LCSTWKDDGTTV-FSGGCDKQVKMWPLLSGGQPVTVAMH-----DAPIKEVAWIPEMNLLATGS------------WDKT   63 (112)
Q Consensus         2 ~~~~~~~~~~~l-~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~------------~~~~   63 (112)
                      ..++|+|+++.+ +++..++.|.+||+.+++....+...     ...+..++|+|+++.++.+.            .++.
T Consensus        37 ~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~  116 (337)
T 1pby_B           37 MVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTR  116 (337)
T ss_dssp             CCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCE
T ss_pred             cceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCce
Confidence            468999999766 55566789999999888876655421     22567899999998888775            5799


Q ss_pred             EEEeeCCCCCceEEecC--CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           64 LKYWDTRQPNPVHTQQL--PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        64 i~~w~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      |.+||+.+.+.+..+..  ....+.|+|++++++++  ++.+.+||++++
T Consensus       117 i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~  164 (337)
T 1pby_B          117 VALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAG  164 (337)
T ss_dssp             EEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTT
T ss_pred             EEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCC
Confidence            99999988776655543  34678899999988887  688999999875

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.59  E-value=1.3e-13  Score=78.17  Aligned_cols=107  Identities=11%  Similarity=0.122  Sum_probs=78.3

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCC-CCCcEEEeec-cCCeeEEEEccCCCEEEEee--CCCcEEEe--eCCCCCc
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLS-GGQPVTVAMH-DAPIKEVAWIPEMNLLATGS--WDKTLKYW--DTRQPNP   74 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~-~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~--~~~~i~~w--~~~~~~~   74 (112)
                      |.+++|+|+++++++++ ++.|.+||+.+ ++.......+ ...+.+++|+|+++.++.+.  .++...+|  +..+.+.
T Consensus        44 v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~  122 (297)
T 2ojh_A           44 FEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP  122 (297)
T ss_dssp             CEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC
T ss_pred             eEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce
Confidence            56899999999999887 68999999988 6655444444 36788999999999999888  33455555  5444442


Q ss_pred             eEEec--CCCeEEEEeeCCCEEE-EEeCCCcEEEEECc
Q 045566           75 VHTQQ--LPDRCYALTVRYPLMV-VGTADRNLVVFNLQ  109 (112)
Q Consensus        75 ~~~~~--~~~~~~~~~~~~~~~~-~~~~d~~v~~~d~~  109 (112)
                       ..+.  .....+.|+|+++.++ ++..++.+.+|+++
T Consensus       123 -~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~  159 (297)
T 2ojh_A          123 -RLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMD  159 (297)
T ss_dssp             -EECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred             -EEeecCCCccceEECCCCCEEEEEECCCCceEEEEEE
Confidence             2222  2345678999999777 67788989999853

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.58  E-value=2.9e-14  Score=89.74  Aligned_cols=109  Identities=11%  Similarity=0.018  Sum_probs=82.0

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCC-----CCCcEEEeeccCC--------------eeEEEEccCCCEEEEee---
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLS-----GGQPVTVAMHDAP--------------IKEVAWIPEMNLLATGS---   59 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~--------------v~~~~~~~~~~~~~~~~---   59 (112)
                      .+++|+|+|+.++.+ .++.|.+|++.+     ++.......+...              +.++.|+|+|+.++.++   
T Consensus       124 ~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~  202 (706)
T 2z3z_A          124 ASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQ  202 (706)
T ss_dssp             TTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEEC
T ss_pred             cCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECC
Confidence            467999999999885 678999999987     6554333322222              47899999999998886   


Q ss_pred             ------------------------------CCCcEEEeeCCCCCceEEecC-----CCeEEEEeeCCCEEEEEeCCC---
Q 045566           60 ------------------------------WDKTLKYWDTRQPNPVHTQQL-----PDRCYALTVRYPLMVVGTADR---  101 (112)
Q Consensus        60 ------------------------------~~~~i~~w~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~d~---  101 (112)
                                                    .+..|.+||+.+++.......     ....+.|+|+++.+++++.++   
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~  282 (706)
T 2z3z_A          203 SMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQN  282 (706)
T ss_dssp             TTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSC
T ss_pred             CCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCC
Confidence                                          346799999987764433211     235789999999999887775   


Q ss_pred             --cEEEEECcCC
Q 045566          102 --NLVVFNLQNP  111 (112)
Q Consensus       102 --~v~~~d~~~~  111 (112)
                        .|.+||+.++
T Consensus       283 ~~~v~~~d~~~g  294 (706)
T 2z3z_A          283 ECKVNAYDAETG  294 (706)
T ss_dssp             EEEEEEEETTTC
T ss_pred             eeEEEEEECCCC
Confidence              8999998876

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.57  E-value=7.3e-14  Score=81.43  Aligned_cols=107  Identities=16%  Similarity=0.118  Sum_probs=77.3

Q ss_pred             eeEEEcCCCCEEEEEcC---CCcEEEEEcCCCCC--cEEEeeccCCeeEEEEccCCCEEEEee-CCCcEEEeeCCCCC--
Q 045566            2 LCSTWKDDGTTVFSGGC---DKQVKMWPLLSGGQ--PVTVAMHDAPIKEVAWIPEMNLLATGS-WDKTLKYWDTRQPN--   73 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~---~~~v~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~i~~w~~~~~~--   73 (112)
                      ..++|+|+|+ +++++.   ++.|.+|++..++.  +..+..+...+..++|+|+++++++++ .++.+.+|++....  
T Consensus        43 ~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~  121 (347)
T 3hfq_A           43 TYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGAL  121 (347)
T ss_dssp             CCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCE
T ss_pred             ceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCe
Confidence            4689999999 555544   68999999865542  233345667789999999999887777 68899999996332  


Q ss_pred             -ceEEecC------------CCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           74 -PVHTQQL------------PDRCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        74 -~~~~~~~------------~~~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                       .+.....            ....++++|+++.+++...++.|.+||+.
T Consensus       122 ~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~  170 (347)
T 3hfq_A          122 TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVS  170 (347)
T ss_dssp             EEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEEC
T ss_pred             eecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEEC
Confidence             2222221            13458999999955555668889999987

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.57  E-value=4.4e-13  Score=77.54  Aligned_cols=110  Identities=10%  Similarity=0.110  Sum_probs=80.8

Q ss_pred             eeEEEcCCCCEEEEE-cCCCc-EEEEEcCCCCCcE----EEeeccCCeeEEEEccCCCEE-EEeeCCCcEEEeeCCCCCc
Q 045566            2 LCSTWKDDGTTVFSG-GCDKQ-VKMWPLLSGGQPV----TVAMHDAPIKEVAWIPEMNLL-ATGSWDKTLKYWDTRQPNP   74 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~-~~~~~-v~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~i~~w~~~~~~~   74 (112)
                      .+++|+|+|++++++ ..++. +.+|++.......    ...........++|+|+++++ ++...++.|.+||+.+.+.
T Consensus       131 ~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~  210 (331)
T 3u4y_A          131 VGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN  210 (331)
T ss_dssp             EEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred             cceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence            468999999865554 55578 9999987554432    112234567899999999855 4555688999999988877


Q ss_pred             ---eEEecC--CCeEEEEeeCCCEEEEEe-CCCcEEEEECcCC
Q 045566           75 ---VHTQQL--PDRCYALTVRYPLMVVGT-ADRNLVVFNLQNP  111 (112)
Q Consensus        75 ---~~~~~~--~~~~~~~~~~~~~~~~~~-~d~~v~~~d~~~~  111 (112)
                         +..+..  ....++|+|+++++++++ .++.|.+||+.++
T Consensus       211 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~  253 (331)
T 3u4y_A          211 ITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG  253 (331)
T ss_dssp             CEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred             cceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence               655543  346789999999777665 4678999998875

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.56  E-value=2.1e-14  Score=90.54  Aligned_cols=96  Identities=11%  Similarity=0.072  Sum_probs=73.2

Q ss_pred             CeeEEEcCCCCEEEEEcC---------CCcEEEEEcCCCCCc--EEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeC
Q 045566            1 VLCSTWKDDGTTVFSGGC---------DKQVKMWPLLSGGQP--VTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT   69 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~---------~~~v~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~   69 (112)
                      +.+++|+|||++|+.++.         ++.+++||+.+++..  ..+   ...+..++|+|+|+.++.+. ++.|++|++
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~  137 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQR  137 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESS
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeC
Confidence            457899999999998876         689999999876542  122   24678899999999988875 789999999


Q ss_pred             CCCCceEEecC---------------------CCeEEEEeeCCCEEEEEeCC
Q 045566           70 RQPNPVHTQQL---------------------PDRCYALTVRYPLMVVGTAD  100 (112)
Q Consensus        70 ~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~d  100 (112)
                      .+++.......                     ....+.|+|+|+.|+.++.|
T Consensus       138 ~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d  189 (719)
T 1z68_A          138 PGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFN  189 (719)
T ss_dssp             TTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEE
T ss_pred             CCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEEC
Confidence            87765432211                     11478999999999988765

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.56  E-value=1.6e-13  Score=79.39  Aligned_cols=108  Identities=14%  Similarity=0.098  Sum_probs=77.9

Q ss_pred             eeEEEcCCCCEEEEEc-CCCcEEEEEcCCC---CCcEEEeeccCCeeEEEEccCCCEEEEee-CCCcEEEeeCCC-CCce
Q 045566            2 LCSTWKDDGTTVFSGG-CDKQVKMWPLLSG---GQPVTVAMHDAPIKEVAWIPEMNLLATGS-WDKTLKYWDTRQ-PNPV   75 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~-~~~~v~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~i~~w~~~~-~~~~   75 (112)
                      ..++|+|+++.+++++ .++.|.+|++..+   +....+. ....+.+++|+|+++.+++++ .++.+.+||+.+ ++..
T Consensus        87 ~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~  165 (343)
T 1ri6_A           87 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV  165 (343)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred             cEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCcee
Confidence            5789999999876665 4888999998522   2222333 334578899999999877776 889999999987 4332


Q ss_pred             E----EecC----CCeEEEEeeCCCEEEEEe-CCCcEEEEECcC
Q 045566           76 H----TQQL----PDRCYALTVRYPLMVVGT-ADRNLVVFNLQN  110 (112)
Q Consensus        76 ~----~~~~----~~~~~~~~~~~~~~~~~~-~d~~v~~~d~~~  110 (112)
                      .    ....    ....++|+|+++++++++ .++.+.+||++.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~  209 (343)
T 1ri6_A          166 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKD  209 (343)
T ss_dssp             EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSC
T ss_pred             eecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence            1    1211    235688999999776655 788999999853

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.55  E-value=2.4e-13  Score=79.69  Aligned_cols=107  Identities=14%  Similarity=0.146  Sum_probs=76.4

Q ss_pred             eeEEEcCCCCEEEEEc-CCCcEEEEEcCCCCC--cEEEe---eccCCeeEEEEccCCCEEEEeeC--CCcEEEeeCC--C
Q 045566            2 LCSTWKDDGTTVFSGG-CDKQVKMWPLLSGGQ--PVTVA---MHDAPIKEVAWIPEMNLLATGSW--DKTLKYWDTR--Q   71 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~-~~~~v~~~~~~~~~~--~~~~~---~~~~~v~~~~~~~~~~~~~~~~~--~~~i~~w~~~--~   71 (112)
                      ..++|+|+|+++++++ .++.|.+|++.+++.  ...+.   .+......++|+|++++++.+..  ++.+.+|++.  +
T Consensus       214 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~  293 (361)
T 3scy_A          214 RHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETN  293 (361)
T ss_dssp             EEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTT
T ss_pred             eEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCC
Confidence            4689999999887766 689999999875543  12222   22244679999999998866655  4889999986  3


Q ss_pred             CC--ceEEecC--CCeEEEEeeCCCEEEEEe-CCCcEEEEEC
Q 045566           72 PN--PVHTQQL--PDRCYALTVRYPLMVVGT-ADRNLVVFNL  108 (112)
Q Consensus        72 ~~--~~~~~~~--~~~~~~~~~~~~~~~~~~-~d~~v~~~d~  108 (112)
                      ++  .+.....  ....++|+|+++++++++ .++.+.+|++
T Consensus       294 g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~  335 (361)
T 3scy_A          294 GTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFER  335 (361)
T ss_dssp             CCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred             CcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEE
Confidence            33  2333322  456889999999888887 5688999644

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.55  E-value=5.4e-13  Score=77.42  Aligned_cols=67  Identities=19%  Similarity=0.195  Sum_probs=54.9

Q ss_pred             eeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCceEEecC--CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           43 IKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNPVHTQQL--PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        43 v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      +..++++| +++.++++  ++.|.+||+.+.+.+..+..  ....++|+++++.+++++.++.|.+||++++
T Consensus       257 ~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~  326 (349)
T 1jmx_B          257 YFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL  326 (349)
T ss_dssp             EEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred             ceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence            45677789 99988887  88999999998876655533  4567899999998888888999999999875

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.55  E-value=1.2e-13  Score=90.36  Aligned_cols=108  Identities=6%  Similarity=0.043  Sum_probs=87.4

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEE-EEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe--
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVK-MWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ--   78 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~--   78 (112)
                      ..++|+ +|+.++.++.+..+. +|+...++. ..+..+...+..++|+|+++.+++++.++.+++||+.+++.....  
T Consensus       341 ~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~-~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~  418 (1045)
T 1k32_A          341 VRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA-EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS  418 (1045)
T ss_dssp             EEECSS-SEEEEEEEETTEEEEEEEETTTCCE-EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             EeeeEc-CCCeEEEEECCCceEEEEECCCCCc-eEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccC
Confidence            467889 999999888888888 889876543 344467788999999999999999999999999999988765544  


Q ss_pred             -cCCCeEEEEeeCCCEEEEEeCCC----------cEEEEECcCC
Q 045566           79 -QLPDRCYALTVRYPLMVVGTADR----------NLVVFNLQNP  111 (112)
Q Consensus        79 -~~~~~~~~~~~~~~~~~~~~~d~----------~v~~~d~~~~  111 (112)
                       ......++|+|++++++.++.++          .|++||+.++
T Consensus       419 ~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g  462 (1045)
T 1k32_A          419 REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR  462 (1045)
T ss_dssp             SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT
T ss_pred             CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC
Confidence             23456789999999998887644          8999998765

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.54  E-value=1.3e-12  Score=76.55  Aligned_cols=108  Identities=7%  Similarity=0.060  Sum_probs=77.1

Q ss_pred             eeEEEcCCCCEEEEE-cCCCcEEEEEcCCCCC------cE------E-EeeccCCeeEEEEccCCCEEEEee-CCCcEEE
Q 045566            2 LCSTWKDDGTTVFSG-GCDKQVKMWPLLSGGQ------PV------T-VAMHDAPIKEVAWIPEMNLLATGS-WDKTLKY   66 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~-~~~~~v~~~~~~~~~~------~~------~-~~~~~~~v~~~~~~~~~~~~~~~~-~~~~i~~   66 (112)
                      .+++|+|+|++++++ ..++.+.+|++.....      +.      . ..........++|+|++++++.++ .++.|.+
T Consensus       158 ~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v  237 (361)
T 3scy_A          158 HCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIA  237 (361)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEE
T ss_pred             eEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEE
Confidence            468999999976555 4578999998875442      21      1 123345678999999999777666 6899999


Q ss_pred             eeCCCCCc--eEEecCC------CeEEEEeeCCCEEEEEeCC--CcEEEEECc
Q 045566           67 WDTRQPNP--VHTQQLP------DRCYALTVRYPLMVVGTAD--RNLVVFNLQ  109 (112)
Q Consensus        67 w~~~~~~~--~~~~~~~------~~~~~~~~~~~~~~~~~~d--~~v~~~d~~  109 (112)
                      |++.+++.  +......      ...++|+|++++++++..+  +.|.+|++.
T Consensus       238 ~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          238 FRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             EEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred             EEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence            99986532  2222211      2478999999988777665  789999985

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.52  E-value=2.5e-13  Score=85.51  Aligned_cols=94  Identities=5%  Similarity=-0.075  Sum_probs=71.3

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCC-----CCce
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ-----PNPV   75 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~-----~~~~   75 (112)
                      |.+++|+|+ +.++.+. ++.+++||+.+++. ..+..+...+..++|+|+|+.++.+ .++.|++|++.+     ++..
T Consensus        84 v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~  159 (706)
T 2z3z_A           84 SFRTLDAGR-GLVVLFT-QGGLVGFDMLARKV-TYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAI  159 (706)
T ss_dssp             CEEEEETTT-TEEEEEE-TTEEEEEETTTTEE-EEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCE
T ss_pred             ceeEEECCC-CeEEEEE-CCEEEEEECCCCce-EEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcE
Confidence            467899999 6655553 48999999876654 3444456778899999999998885 679999999987     6654


Q ss_pred             EEecC--C---------------CeEEEEeeCCCEEEEEe
Q 045566           76 HTQQL--P---------------DRCYALTVRYPLMVVGT   98 (112)
Q Consensus        76 ~~~~~--~---------------~~~~~~~~~~~~~~~~~   98 (112)
                      .....  .               ...+.|+|++++|++++
T Consensus       160 ~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~  199 (706)
T 2z3z_A          160 AVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYR  199 (706)
T ss_dssp             ESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEE
T ss_pred             EeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEE
Confidence            32221  1               36789999999999987

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.51  E-value=1.1e-12  Score=78.02  Aligned_cols=102  Identities=17%  Similarity=0.159  Sum_probs=83.5

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |+.++|  +++.|+++ .++.|++||+.+.........++..+..+.+.+.  .++.+..||.+.+||+.+.+... +..
T Consensus        90 V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-~~~  163 (388)
T 1xip_A           90 VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-LAQ  163 (388)
T ss_dssp             EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-EEE
T ss_pred             eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-ccC
Confidence            467888  88999999 8899999999887766666777788888776643  38888999999999998776543 455


Q ss_pred             CCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           81 PDRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      .+.+++|+|.|  ++.+..||.+++|+...
T Consensus       164 ~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~  191 (388)
T 1xip_A          164 NVTSFDVTNSQ--LAVLLKDRSFQSFAWRN  191 (388)
T ss_dssp             SEEEEEECSSE--EEEEETTSCEEEEEEET
T ss_pred             CceEEEEcCCc--eEEEEcCCcEEEEcCCC
Confidence            77899999999  77899999999997654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.50  E-value=2.8e-12  Score=74.73  Aligned_cols=110  Identities=15%  Similarity=0.139  Sum_probs=76.5

Q ss_pred             eeEEEcCCCCEEEE-EcCCCcEEEEEcCC--CCC--cEEEeecc------CCeeEEEEccCCCEE-EEeeCCCcEEEeeC
Q 045566            2 LCSTWKDDGTTVFS-GGCDKQVKMWPLLS--GGQ--PVTVAMHD------APIKEVAWIPEMNLL-ATGSWDKTLKYWDT   69 (112)
Q Consensus         2 ~~~~~~~~~~~l~~-~~~~~~v~~~~~~~--~~~--~~~~~~~~------~~v~~~~~~~~~~~~-~~~~~~~~i~~w~~   69 (112)
                      ..++|+|+|+++++ ...++.+.+|++..  ++.  ...+....      ..+..++|+|+++++ ++...++.|.+|++
T Consensus       190 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~  269 (347)
T 3hfq_A          190 RHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAV  269 (347)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEE
T ss_pred             ceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEE
Confidence            35799999996655 56788999999874  222  11222211      347889999999976 55566899999998


Q ss_pred             CCC---CceEEecC---CCeEEEEeeCCCEEEEEeCC-CcEEEE--ECcCC
Q 045566           70 RQP---NPVHTQQL---PDRCYALTVRYPLMVVGTAD-RNLVVF--NLQNP  111 (112)
Q Consensus        70 ~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~d-~~v~~~--d~~~~  111 (112)
                      ...   +.+.....   ....++|+|+++++++++.+ +.+.+|  |.+++
T Consensus       270 ~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg  320 (347)
T 3hfq_A          270 TADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSG  320 (347)
T ss_dssp             CGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred             CCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCC
Confidence            732   23333332   35688999999988888765 889999  44444

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.45  E-value=3.5e-13  Score=85.60  Aligned_cols=107  Identities=8%  Similarity=0.072  Sum_probs=82.3

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCC-----eeEEEEccCCCEEEEeeCC---------CcEEEe
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAP-----IKEVAWIPEMNLLATGSWD---------KTLKYW   67 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~~~~~~---------~~i~~w   67 (112)
                      .+++|+|++++++++  |+.|.+||+.+++....+..+...     ...+.|+|+|+.++.+..+         +.+.+|
T Consensus        20 ~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~   97 (740)
T 4a5s_A           20 YSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (740)
T ss_dssp             CCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEE
Confidence            468999999988886  899999999988876666655422     2347899999999888765         556799


Q ss_pred             eCCCCCceEE--ecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           68 DTRQPNPVHT--QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        68 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      |+.+++....  .........|+|+|+.++.+ .++.|++||+.++
T Consensus        98 d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~  142 (740)
T 4a5s_A           98 DLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNL  142 (740)
T ss_dssp             ETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTS
T ss_pred             ECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCC
Confidence            9988764332  22345678999999999887 4689999998765

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.43  E-value=2.4e-12  Score=80.64  Aligned_cols=110  Identities=11%  Similarity=0.004  Sum_probs=79.3

Q ss_pred             eeEEEcCCCCEEEEEcCC----------CcEEEEEcCCC-----CCcEEEe-eccCCeeEEEEccCCCEEEEeeCC----
Q 045566            2 LCSTWKDDGTTVFSGGCD----------KQVKMWPLLSG-----GQPVTVA-MHDAPIKEVAWIPEMNLLATGSWD----   61 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~----------~~v~~~~~~~~-----~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~----   61 (112)
                      ..++|+|+|+.|+.++.+          ..|.+|++.+.     .....+. .+...+..+.|+|+|+.++..+.+    
T Consensus       133 ~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~  212 (662)
T 3azo_A          133 ADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRM  212 (662)
T ss_dssp             EEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCC
T ss_pred             cCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCC
Confidence            468999999999988876          57999998762     3344555 555677889999999999877654    


Q ss_pred             ----CcEEEeeCC-CC---CceEEe---cCCCeEEEEeeCCCEEEEEeCCC--cEEEEECcCC
Q 045566           62 ----KTLKYWDTR-QP---NPVHTQ---QLPDRCYALTVRYPLMVVGTADR--NLVVFNLQNP  111 (112)
Q Consensus        62 ----~~i~~w~~~-~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~--~v~~~d~~~~  111 (112)
                          ..|.+||+. ++   +.....   ........|+|++++++++..++  .|..||+.++
T Consensus       213 ~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~  275 (662)
T 3azo_A          213 PWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATG  275 (662)
T ss_dssp             TTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTC
T ss_pred             CCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCC
Confidence                369999998 45   222222   23446788999999888887788  5666665443

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.42  E-value=6.8e-12  Score=77.73  Aligned_cols=106  Identities=12%  Similarity=-0.010  Sum_probs=76.1

Q ss_pred             eEEEcCCCC--EEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCC----CcEEEeeCCCCCceE
Q 045566            3 CSTWKDDGT--TVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWD----KTLKYWDTRQPNPVH   76 (112)
Q Consensus         3 ~~~~~~~~~--~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~i~~w~~~~~~~~~   76 (112)
                      ..+|+|+++  .+++++.+ .+.+||+.+++...... +..  .++.|+|+|+.++.++.+    +.|++||+.+++...
T Consensus       114 ~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~~~~l~~-~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~  189 (582)
T 3o4h_A          114 ILSGVDTGEAVVFTGATED-RVALYALDGGGLRELAR-LPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRV  189 (582)
T ss_dssp             EEEEEECSSCEEEEEECSS-CEEEEEEETTEEEEEEE-ESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEE
T ss_pred             eeeeCCCCCeEEEEecCCC-CceEEEccCCcEEEeec-CCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceE
Confidence            357888775  34444444 45599988765443333 333  789999999999977766    779999998776543


Q ss_pred             Eec--CCCeEEEEeeCCCEEEEEeCCC--cEEEEECcCCC
Q 045566           77 TQQ--LPDRCYALTVRYPLMVVGTADR--NLVVFNLQNPQ  112 (112)
Q Consensus        77 ~~~--~~~~~~~~~~~~~~~~~~~~d~--~v~~~d~~~~~  112 (112)
                      ...  ......+|+|+|+.++++..++  .|++||+.+++
T Consensus       190 l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~  229 (582)
T 3o4h_A          190 FDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGS  229 (582)
T ss_dssp             ECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC
T ss_pred             eecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCc
Confidence            222  2346789999999999888888  89999988753

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.42  E-value=2.6e-11  Score=71.38  Aligned_cols=108  Identities=18%  Similarity=0.104  Sum_probs=75.9

Q ss_pred             eeEEEcCCCCEEEEEc-CCCcEEEEEcC-CCCCcE--EEe--eccCCeeEEEEccCCCEEEEeeC-CCcEEEeeCC--CC
Q 045566            2 LCSTWKDDGTTVFSGG-CDKQVKMWPLL-SGGQPV--TVA--MHDAPIKEVAWIPEMNLLATGSW-DKTLKYWDTR--QP   72 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~-~~~~v~~~~~~-~~~~~~--~~~--~~~~~v~~~~~~~~~~~~~~~~~-~~~i~~w~~~--~~   72 (112)
                      .+++|+|+|++++++. .++.|.+|++. +++...  .+.  .+...+..++|+|++++++.++. ++.+.+|++.  ++
T Consensus       148 ~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g  227 (365)
T 1jof_A          148 HGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATH  227 (365)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred             eEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCC
Confidence            4789999999888765 46799999987 555322  222  13566889999999998877664 7889999765  34


Q ss_pred             Cce---EE---ecC-------------CCeEEE-EeeCCCEEEEEeCCC------cEEEEECc
Q 045566           73 NPV---HT---QQL-------------PDRCYA-LTVRYPLMVVGTADR------NLVVFNLQ  109 (112)
Q Consensus        73 ~~~---~~---~~~-------------~~~~~~-~~~~~~~~~~~~~d~------~v~~~d~~  109 (112)
                      +..   ..   +..             ....++ |+|+++++++++.+.      .|.+|++.
T Consensus       228 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~  290 (365)
T 1jof_A          228 MPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR  290 (365)
T ss_dssp             CEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred             cEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEEC
Confidence            321   11   111             134678 999999888776533      79999985

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.40  E-value=4.9e-12  Score=74.46  Aligned_cols=109  Identities=3%  Similarity=-0.047  Sum_probs=76.6

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcC-CCCCcEEEeec-cCCeeEEEEccCCCE--EEEee-------------CCCcE
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLL-SGGQPVTVAMH-DAPIKEVAWIPEMNL--LATGS-------------WDKTL   64 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~--~~~~~-------------~~~~i   64 (112)
                      ..++|+|+++++++++.+ .+.+|++. +++........ .+....++|+|+++.  ++++.             .++.+
T Consensus        43 ~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v  121 (365)
T 1jof_A           43 SWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYG  121 (365)
T ss_dssp             SEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEE
T ss_pred             cEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceE
Confidence            468999999999988887 99999986 55443222211 123556889999984  44553             68899


Q ss_pred             EEeeCCC-CCceEEe-------cCCCeEEEEeeCCCEEEEEeC-CCcEEEEECc-CC
Q 045566           65 KYWDTRQ-PNPVHTQ-------QLPDRCYALTVRYPLMVVGTA-DRNLVVFNLQ-NP  111 (112)
Q Consensus        65 ~~w~~~~-~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-d~~v~~~d~~-~~  111 (112)
                      .+|++.. ++.....       ......+.|+|++++++++.. ++.|.+||+. ++
T Consensus       122 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g  178 (365)
T 1jof_A          122 NVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASG  178 (365)
T ss_dssp             EEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS
T ss_pred             EEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCC
Confidence            9999974 4432222       123467889999998887764 6789999987 44

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.37  E-value=1.3e-10  Score=66.18  Aligned_cols=106  Identities=11%  Similarity=0.061  Sum_probs=78.7

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeec--cCCeeEEEEccCCCEEEEeeCCC-cEEEeeCCCCCceEEe
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMH--DAPIKEVAWIPEMNLLATGSWDK-TLKYWDTRQPNPVHTQ   78 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~-~i~~w~~~~~~~~~~~   78 (112)
                      ..++++++++.+++...++.|.+|+. .++....+...  ......+++++++.++++...++ .|.+|+.. ++.+..+
T Consensus       167 ~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~  244 (286)
T 1q7f_A          167 NGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISAL  244 (286)
T ss_dssp             EEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEE
T ss_pred             EEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEE
Confidence            46899999998888788899999996 44544455433  25678999999999888887775 99999964 4444443


Q ss_pred             cCC-----CeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           79 QLP-----DRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        79 ~~~-----~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      ...     ...++++++++++++ +.++.|++|++..
T Consensus       245 ~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          245 ESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             EESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred             cccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence            221     246888999876655 6799999999865

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.36  E-value=2.1e-11  Score=71.90  Aligned_cols=109  Identities=14%  Similarity=0.078  Sum_probs=78.1

Q ss_pred             EEEcCCCCEEEEEcC-CC--cEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            4 STWKDDGTTVFSGGC-DK--QVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         4 ~~~~~~~~~l~~~~~-~~--~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      .+|+|+|+.|+.++. ++  .+.+||+.+++.......+...+....|+|+++.++.+..++.+++||+.+++.......
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~  120 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV  120 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec
Confidence            679999999888876 66  488888877665444444444444678999999999999899999999998876554443


Q ss_pred             CCe-----EEEEeeCCCEEEEE----------------------eCCCcEEEEECcCCC
Q 045566           81 PDR-----CYALTVRYPLMVVG----------------------TADRNLVVFNLQNPQ  112 (112)
Q Consensus        81 ~~~-----~~~~~~~~~~~~~~----------------------~~d~~v~~~d~~~~~  112 (112)
                      +..     ...+++++..++..                      ..+..|.+||+.+++
T Consensus       121 ~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~  179 (388)
T 3pe7_A          121 PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE  179 (388)
T ss_dssp             CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC
T ss_pred             hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc
Confidence            321     12347788877643                      234678899988764

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.36  E-value=9.5e-12  Score=79.12  Aligned_cols=96  Identities=10%  Similarity=-0.001  Sum_probs=71.9

Q ss_pred             eEEEcCCCCEEEEEcCC---------CcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC
Q 045566            3 CSTWKDDGTTVFSGGCD---------KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN   73 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~~---------~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~   73 (112)
                      .++|||||++++.++.+         +.+.+||+.+++.. .+..+...+...+|+|+|+.++.+ .++.|++|+..+++
T Consensus        66 ~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~  143 (740)
T 4a5s_A           66 DYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLP  143 (740)
T ss_dssp             EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSC
T ss_pred             ceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCc
Confidence            47899999999988875         55679999877643 345566789999999999998877 56899999998766


Q ss_pred             ceEEec-C--------------------CCeEEEEeeCCCEEEEEeCC
Q 045566           74 PVHTQQ-L--------------------PDRCYALTVRYPLMVVGTAD  100 (112)
Q Consensus        74 ~~~~~~-~--------------------~~~~~~~~~~~~~~~~~~~d  100 (112)
                      ..+.-. .                    ....+.|+|+|+.|+..+.|
T Consensus       144 ~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d  191 (740)
T 4a5s_A          144 SYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN  191 (740)
T ss_dssp             CEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred             eEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEc
Confidence            443211 1                    11347899999988887543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.35  E-value=3.5e-11  Score=76.27  Aligned_cols=108  Identities=13%  Similarity=0.127  Sum_probs=78.3

Q ss_pred             eeEEEcCCCCEEEEEcCCC-----cEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCc-------------
Q 045566            2 LCSTWKDDGTTVFSGGCDK-----QVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKT-------------   63 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-------------   63 (112)
                      ..++|||+|++|+.+..++     .|++||+.+++....... ...+..++|+|+++.++.+..++.             
T Consensus       128 ~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~  206 (710)
T 2xdw_A          128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNL  206 (710)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCC
T ss_pred             EEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-CcccceEEEEeCCCEEEEEEECCccccccccccccCC
Confidence            4678999999998765433     899999988776543222 223667999999999888877655             


Q ss_pred             ---EEEeeCCCCCc--eEEecC---C--CeEEEEeeCCCEEEEEeC-----CCcEEEEECcC
Q 045566           64 ---LKYWDTRQPNP--VHTQQL---P--DRCYALTVRYPLMVVGTA-----DRNLVVFNLQN  110 (112)
Q Consensus        64 ---i~~w~~~~~~~--~~~~~~---~--~~~~~~~~~~~~~~~~~~-----d~~v~~~d~~~  110 (112)
                         |++|++.+++.  ...+..   +  .....++|++++++..+.     +..+.+||+.+
T Consensus       207 ~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~  268 (710)
T 2xdw_A          207 HQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQ  268 (710)
T ss_dssp             CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred             CCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcc
Confidence               99999987653  222222   1  246789999998887764     56799999875

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.35  E-value=3.6e-11  Score=75.37  Aligned_cols=108  Identities=16%  Similarity=0.153  Sum_probs=76.0

Q ss_pred             eeEEEcCCCCEEEEEcCC--------CcEEEEEcC-CCC--CcEEE-eeccCCeeEEEEccCCCEEEEeeCCC--cEEEe
Q 045566            2 LCSTWKDDGTTVFSGGCD--------KQVKMWPLL-SGG--QPVTV-AMHDAPIKEVAWIPEMNLLATGSWDK--TLKYW   67 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~--------~~v~~~~~~-~~~--~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~--~i~~w   67 (112)
                      ..++|+|||++|+.++.+        ..|.+||+. ++.  ....+ ..+...+..+.|+|+|++++++..++  .|..|
T Consensus       191 ~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~  270 (662)
T 3azo_A          191 TGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRV  270 (662)
T ss_dssp             CCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEE
T ss_pred             cCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEE
Confidence            357899999999877754        379999988 451  33333 34467889999999999888888787  56666


Q ss_pred             eCCCCCceEEecCC-----------CeEEEEeeCCCEEEEEeCCCcEEEE--ECcC
Q 045566           68 DTRQPNPVHTQQLP-----------DRCYALTVRYPLMVVGTADRNLVVF--NLQN  110 (112)
Q Consensus        68 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~d~~v~~~--d~~~  110 (112)
                      |+.+++........           ...+.+++++.++++++. +.+++|  |+..
T Consensus       271 ~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~  325 (662)
T 3azo_A          271 DPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPES  325 (662)
T ss_dssp             CTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTT
T ss_pred             ECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCC
Confidence            66555433221111           345778888999999888 888888  5443

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.31  E-value=2.4e-11  Score=76.81  Aligned_cols=108  Identities=11%  Similarity=0.020  Sum_probs=75.6

Q ss_pred             eeEEEcCCCCEEE-----EEcCCCcEEEEEcCCCCCc-EEEeeccCCeeEEEEccCCCEEEEeeCCCc------------
Q 045566            2 LCSTWKDDGTTVF-----SGGCDKQVKMWPLLSGGQP-VTVAMHDAPIKEVAWIPEMNLLATGSWDKT------------   63 (112)
Q Consensus         2 ~~~~~~~~~~~l~-----~~~~~~~v~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~------------   63 (112)
                      ..++|||+|++|+     .|+.+..|++||+.+++.. .... .......++|+|+++.++.+..+..            
T Consensus       124 ~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~-~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~  202 (695)
T 2bkl_A          124 GTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI-EGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYT  202 (695)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB-SCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGC
T ss_pred             EEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc-CcccccceEEecCCCEEEEEEecCCCCCccccCCCCC
Confidence            4679999999998     3445678999999888764 2111 1111267899999999988887665            


Q ss_pred             -EEEeeCCCCCc--eEEecC-----CCeEEEEeeCCCEEEEEeCCC----cEEEEECcC
Q 045566           64 -LKYWDTRQPNP--VHTQQL-----PDRCYALTVRYPLMVVGTADR----NLVVFNLQN  110 (112)
Q Consensus        64 -i~~w~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~~d~----~v~~~d~~~  110 (112)
                       |++|++.+++.  ...+..     ......++|+|++++..+.++    .|.++|..+
T Consensus       203 ~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~  261 (695)
T 2bkl_A          203 TIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGE  261 (695)
T ss_dssp             EEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTC
T ss_pred             EEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCC
Confidence             99999987752  222222     234678999999888877655    566666543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.30  E-value=3.8e-11  Score=70.85  Aligned_cols=101  Identities=12%  Similarity=0.138  Sum_probs=78.6

Q ss_pred             CCCEEEEEc------CCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEee----------CCCcEEEeeCCCC
Q 045566            9 DGTTVFSGG------CDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGS----------WDKTLKYWDTRQP   72 (112)
Q Consensus         9 ~~~~l~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------~~~~i~~w~~~~~   72 (112)
                      +++++++..      .|+.|.+||..+++...++.....+  .++++|++++++.+.          .++.|.+||..+.
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~   91 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL   91 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence            566676653      3679999999888877777655444  899999999888876          2567999999988


Q ss_pred             CceEEecC---------CCeEEEEeeCCCEEEEEeC--CCcEEEEECcCC
Q 045566           73 NPVHTQQL---------PDRCYALTVRYPLMVVGTA--DRNLVVFNLQNP  111 (112)
Q Consensus        73 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~--d~~v~~~d~~~~  111 (112)
                      +.+..+..         ....++++|+++++++++.  ++.|.+||+.++
T Consensus        92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~  141 (361)
T 2oiz_A           92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKG  141 (361)
T ss_dssp             CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTT
T ss_pred             cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCC
Confidence            87766542         2356899999999999874  578999999875

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.29  E-value=8.2e-10  Score=64.04  Aligned_cols=109  Identities=6%  Similarity=-0.128  Sum_probs=78.2

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCC----CcEEEeeCCCCCceEE
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWD----KTLKYWDTRQPNPVHT   77 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~i~~w~~~~~~~~~~   77 (112)
                      .+++|+|++++++++..++.|.+||..+++.......+...+.++++++++.++++...+    +.|.+||..+.+....
T Consensus        48 ~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~  127 (333)
T 2dg1_A           48 EGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDI  127 (333)
T ss_dssp             EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEE
T ss_pred             cCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEE
Confidence            467899999988888889999999987666543333456779999999999988877666    6899999887654422


Q ss_pred             ec-----CCCeEEEEeeCCCEEEEEeC------CCcEEEEECcC
Q 045566           78 QQ-----LPDRCYALTVRYPLMVVGTA------DRNLVVFNLQN  110 (112)
Q Consensus        78 ~~-----~~~~~~~~~~~~~~~~~~~~------d~~v~~~d~~~  110 (112)
                      ..     .....+.+++++..+++...      .+.|..+|..+
T Consensus       128 ~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~  171 (333)
T 2dg1_A          128 IEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF  171 (333)
T ss_dssp             ECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS
T ss_pred             EccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCC
Confidence            22     12356788888887766543      34566666543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.28  E-value=7.8e-10  Score=64.39  Aligned_cols=108  Identities=10%  Similarity=-0.042  Sum_probs=81.0

Q ss_pred             CeeEEEcCCCCEEEEEcCC------------------------CcEEEEEcCCCCCcEEEe-eccCCeeEEEEccCCCEE
Q 045566            1 VLCSTWKDDGTTVFSGGCD------------------------KQVKMWPLLSGGQPVTVA-MHDAPIKEVAWIPEMNLL   55 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~------------------------~~v~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~   55 (112)
                      +.+++++|+|+++++...+                        +.|.+||..+++...... .+......+++++++.++
T Consensus        26 v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~  105 (329)
T 3fvz_A           26 VSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYW  105 (329)
T ss_dssp             EEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEE
T ss_pred             ceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEE
Confidence            3579999999999888776                        479999987777654443 233567899999999988


Q ss_pred             EEeeCCCcEEEeeCCCCC-ceEEecC------------CCeEEEEee-CCCEEEEEe-CCCcEEEEEC
Q 045566           56 ATGSWDKTLKYWDTRQPN-PVHTQQL------------PDRCYALTV-RYPLMVVGT-ADRNLVVFNL  108 (112)
Q Consensus        56 ~~~~~~~~i~~w~~~~~~-~~~~~~~------------~~~~~~~~~-~~~~~~~~~-~d~~v~~~d~  108 (112)
                      ++...++.|+.|+..... .+..+..            ....+++++ ++..+++.+ .++.|++||.
T Consensus       106 v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~  173 (329)
T 3fvz_A          106 VTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP  173 (329)
T ss_dssp             EEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT
T ss_pred             EEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC
Confidence            888889999999986542 3443321            235788998 777777775 6889999983

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.27  E-value=1.6e-09  Score=63.11  Aligned_cols=109  Identities=14%  Similarity=0.057  Sum_probs=80.4

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCC-CcEEEe---------eccCCeeEEEEcc-CCCEEEEee-CCCcEEEeeC
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGG-QPVTVA---------MHDAPIKEVAWIP-EMNLLATGS-WDKTLKYWDT   69 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~-~~~~~~---------~~~~~v~~~~~~~-~~~~~~~~~-~~~~i~~w~~   69 (112)
                      ..++++|+|+.+++...++.|++|+..... .+..+.         .+......++++| ++.++++.+ .++.|.+|+.
T Consensus        94 ~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~  173 (329)
T 3fvz_A           94 HGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP  173 (329)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT
T ss_pred             eEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC
Confidence            468999999988888889999999975432 444442         2334678999999 888888886 6899999994


Q ss_pred             CCCCceEEecC-------------CCeEEEEeeC-CCEEEEEeCCCcEEEEECcCC
Q 045566           70 RQPNPVHTQQL-------------PDRCYALTVR-YPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        70 ~~~~~~~~~~~-------------~~~~~~~~~~-~~~~~~~~~d~~v~~~d~~~~  111 (112)
                       +++.+..+..             ....++++++ +..+++...++.|++||..++
T Consensus       174 -~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G  228 (329)
T 3fvz_A          174 -SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK  228 (329)
T ss_dssp             -TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC
T ss_pred             -CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC
Confidence             4554444321             1357889998 666677777889999998754

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.25  E-value=9.9e-10  Score=68.41  Aligned_cols=103  Identities=9%  Similarity=0.020  Sum_probs=81.2

Q ss_pred             CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCC--CCCceEEecCCC--eE
Q 045566            9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR--QPNPVHTQQLPD--RC   84 (112)
Q Consensus         9 ~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~--~~~~~~~~~~~~--~~   84 (112)
                      .+..+++...++.|.++|..+++.+.++.. ...+..+.++|+++++++++.++.|.+||+.  +.+.+..+....  ..
T Consensus       166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~  244 (567)
T 1qks_A          166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS  244 (567)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEE
T ss_pred             CceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCce
Confidence            345667777889999999998888777763 3456789999999999999999999999995  666666665433  56


Q ss_pred             EEEe----eCCCEEEEEeC-CCcEEEEECcCCC
Q 045566           85 YALT----VRYPLMVVGTA-DRNLVVFNLQNPQ  112 (112)
Q Consensus        85 ~~~~----~~~~~~~~~~~-d~~v~~~d~~~~~  112 (112)
                      +.++    |+++++++++. ++.+.++|..+.+
T Consensus       245 ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~  277 (567)
T 1qks_A          245 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE  277 (567)
T ss_dssp             EEECCSTTCTTTEEEEEEEETTEEEEEETTTCC
T ss_pred             eEEccccCCCCCEEEEEEccCCeEEEEECCCCc
Confidence            7888    69998888766 5889999987653

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.24  E-value=7.3e-10  Score=64.50  Aligned_cols=97  Identities=11%  Similarity=0.075  Sum_probs=67.1

Q ss_pred             CeeEEEcCCCCEEEEEcCC---C--cEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCC--------------
Q 045566            1 VLCSTWKDDGTTVFSGGCD---K--QVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWD--------------   61 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~---~--~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--------------   61 (112)
                      +..++|+|+|+.|+..+.+   +  .|.++++.+++...... ... +..+.|+|+++.++.+..+              
T Consensus        61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~  138 (347)
T 2gop_A           61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILE-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVP  138 (347)
T ss_dssp             CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEE-ESE-EEEEEECTTSSEEEEEEECCCC---------CC
T ss_pred             CCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEc-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccc
Confidence            3568999999998877653   3  37777877655433333 333 8999999999988776532              


Q ss_pred             -------------CcEEEeeCCCCCceEEec-CCCeEEEEeeCCCEEEEEeCC
Q 045566           62 -------------KTLKYWDTRQPNPVHTQQ-LPDRCYALTVRYPLMVVGTAD  100 (112)
Q Consensus        62 -------------~~i~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d  100 (112)
                                   ..+.+||+.+++.+..+. .....+.|+|++ +++++..+
T Consensus       139 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~spdg-~~~~~~~~  190 (347)
T 2gop_A          139 AWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKPRFSSGIWHRDK-IVVNVPHR  190 (347)
T ss_dssp             CC---------CEEEEEEEETTTTEEEEEEEEETTCEEEEETTE-EEEEEECC
T ss_pred             eeecCcccccCccceEEEEECCCCeEEeeecCCCcccccCCCCe-EEEEEecc
Confidence                         468899998775522221 156778899999 77777654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.23  E-value=1.7e-09  Score=61.51  Aligned_cols=106  Identities=9%  Similarity=0.054  Sum_probs=79.6

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe--eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA--MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      ..++++|+++.+++...++.|.+|+.. ++....+.  .+...+..+++++++..+++...++.|.+|+.. ++.+..+.
T Consensus       124 ~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~  201 (286)
T 1q7f_A          124 RGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIG  201 (286)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEES
T ss_pred             eEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEc
Confidence            468899999988888888999999953 44444443  234567899999999988888889999999974 44444443


Q ss_pred             C-----CCeEEEEeeCCCEEEEEeCCC-cEEEEECc
Q 045566           80 L-----PDRCYALTVRYPLMVVGTADR-NLVVFNLQ  109 (112)
Q Consensus        80 ~-----~~~~~~~~~~~~~~~~~~~d~-~v~~~d~~  109 (112)
                      .     ....+++++++.++++...++ .|.+||..
T Consensus       202 ~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~  237 (286)
T 1q7f_A          202 GEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD  237 (286)
T ss_dssp             CTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred             cCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC
Confidence            2     235788899998888777775 99999853

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.23  E-value=1.3e-09  Score=67.88  Aligned_cols=75  Identities=16%  Similarity=0.161  Sum_probs=58.6

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcC--CCCCcEEEeeccCCeeEEEEc----cCCCEEEEeeC-CCcEEEeeCCCCCc
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLL--SGGQPVTVAMHDAPIKEVAWI----PEMNLLATGSW-DKTLKYWDTRQPNP   74 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~~~~-~~~i~~w~~~~~~~   74 (112)
                      ..+.|+|+|+++++++.++.|.+||+.  +.+...++... .....++|+    |+|++++.++. ++.+.++|..+.+.
T Consensus       200 ~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~  278 (567)
T 1qks_A          200 HISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP  278 (567)
T ss_dssp             EEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE
T ss_pred             cceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE
Confidence            468899999999999999999999995  66666666543 345789999    69988776654 68899999877765


Q ss_pred             eEE
Q 045566           75 VHT   77 (112)
Q Consensus        75 ~~~   77 (112)
                      +..
T Consensus       279 ~~~  281 (567)
T 1qks_A          279 KKI  281 (567)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.20  E-value=1e-09  Score=61.80  Aligned_cols=110  Identities=9%  Similarity=-0.064  Sum_probs=80.5

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec--
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ--   79 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~--   79 (112)
                      ..++++++++.+++...++.|.+|+...................+++++++..+++...++.|..|+...........  
T Consensus       153 ~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~  232 (270)
T 1rwi_B          153 DGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTG  232 (270)
T ss_dssp             CCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCS
T ss_pred             eeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCC
Confidence            468899999877777778899999976544322222233567899999999888887778899999987654332211  


Q ss_pred             -CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           80 -LPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        80 -~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                       .....++++++++.+++...++.|.++++...
T Consensus       233 ~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          233 LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred             CCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence             12357888899988888888999999987654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.18  E-value=6.2e-10  Score=66.28  Aligned_cols=106  Identities=13%  Similarity=0.011  Sum_probs=83.8

Q ss_pred             EEcCCCCEEEEEcC-----CCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEee----------CCCcEEEeeC
Q 045566            5 TWKDDGTTVFSGGC-----DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGS----------WDKTLKYWDT   69 (112)
Q Consensus         5 ~~~~~~~~l~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------~~~~i~~w~~   69 (112)
                      ...|+++.+++...     ++.|.+.|..+.+.+.+++.-..+ . +.++|++++++.+.          .++.|.+||.
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~  116 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP  116 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence            34678988888765     578999999998888888755555 4 99999999876664          3678999999


Q ss_pred             CCCCceEEecC----------CCeEEEEeeCCCEEEEEeC--CCcEEEEECcCCC
Q 045566           70 RQPNPVHTQQL----------PDRCYALTVRYPLMVVGTA--DRNLVVFNLQNPQ  112 (112)
Q Consensus        70 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~--d~~v~~~d~~~~~  112 (112)
                      .+.+.+..+..          ....+.++|++++++++..  ++.|.++|+.+++
T Consensus       117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~  171 (386)
T 3sjl_D          117 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA  171 (386)
T ss_dssp             TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE
T ss_pred             CCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCc
Confidence            99988776642          2346899999999998874  5789999998763

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.18  E-value=8.1e-10  Score=65.21  Aligned_cols=107  Identities=9%  Similarity=0.045  Sum_probs=78.3

Q ss_pred             eEEEcCCCCEEEEEcC----------CCcEEEEEcCCCCCcEEEeec------cCCeeEEEEccCCCEEEEeeC--CCcE
Q 045566            3 CSTWKDDGTTVFSGGC----------DKQVKMWPLLSGGQPVTVAMH------DAPIKEVAWIPEMNLLATGSW--DKTL   64 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~----------~~~v~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~--~~~i   64 (112)
                      .++|+|+++++++++.          ++.|.+||..+.+...++...      ......++++|++++++++..  ++.|
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v  133 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI  133 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence            4789999999988863          567999999888877766532      234567999999999988764  5789


Q ss_pred             EEeeCCCCCceEE-ecCCCe-EEEEeeCC-CEEEEEeCCCcEEEEECc
Q 045566           65 KYWDTRQPNPVHT-QQLPDR-CYALTVRY-PLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        65 ~~w~~~~~~~~~~-~~~~~~-~~~~~~~~-~~~~~~~~d~~v~~~d~~  109 (112)
                      .+||+.+.+.+.. +..... ...+.|++ ..+++.+.|+.+.++++.
T Consensus       134 ~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~  181 (361)
T 2oiz_A          134 GIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLG  181 (361)
T ss_dssp             EEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEEC
T ss_pred             EEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEEC
Confidence            9999998877766 543322 23345544 566777778888777764

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.18  E-value=7.2e-10  Score=65.37  Aligned_cols=109  Identities=16%  Similarity=0.101  Sum_probs=71.8

Q ss_pred             eeEEEcC-CCCEEEEEcCC------CcEEEEEcCCCCCcEEEeec--cCCeeEEEEccCCCEEEEeeCC-----CcEEEe
Q 045566            2 LCSTWKD-DGTTVFSGGCD------KQVKMWPLLSGGQPVTVAMH--DAPIKEVAWIPEMNLLATGSWD-----KTLKYW   67 (112)
Q Consensus         2 ~~~~~~~-~~~~l~~~~~~------~~v~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~-----~~i~~w   67 (112)
                      ..+.|+| +++.++..+.+      ..|.++++..++. ..+..+  ...+..+.|+|+++.++....+     +.|.+|
T Consensus       191 ~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~  269 (396)
T 3c5m_A          191 GHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKA  269 (396)
T ss_dssp             EEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEE
T ss_pred             ccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-eEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEE
Confidence            4578999 78877665443      3588888764443 333322  2357788999999876665433     349999


Q ss_pred             eCCCCCceEEecCCCeEEEEee-CCCEEEEEe----------------CCCcEEEEECcCC
Q 045566           68 DTRQPNPVHTQQLPDRCYALTV-RYPLMVVGT----------------ADRNLVVFNLQNP  111 (112)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----------------~d~~v~~~d~~~~  111 (112)
                      |+.+++.......+.....|++ +++.++.++                .+..|++||+.++
T Consensus       270 d~~~g~~~~l~~~~~~~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~  330 (396)
T 3c5m_A          270 NPETLENEEVMVMPPCSHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK  330 (396)
T ss_dssp             CTTTCCEEEEEECCSEEEEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTT
T ss_pred             ECCCCCeEEeeeCCCCCCCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccC
Confidence            9987765433222222378899 999887754                3467999998765

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.17  E-value=2.6e-09  Score=63.65  Aligned_cols=107  Identities=11%  Similarity=0.076  Sum_probs=79.8

Q ss_pred             EEEcCCCCEEEEEc----------CCCcEEEEEcCCCCCcEEEeecc-------CCeeEEEEccCCCEEEEeeC--CCcE
Q 045566            4 STWKDDGTTVFSGG----------CDKQVKMWPLLSGGQPVTVAMHD-------APIKEVAWIPEMNLLATGSW--DKTL   64 (112)
Q Consensus         4 ~~~~~~~~~l~~~~----------~~~~v~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~--~~~i   64 (112)
                      ++++|+|+++++++          .++.|.+||..+.+...++....       ..-..+.++|+|++++.+..  ++.|
T Consensus        83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V  162 (386)
T 3sjl_D           83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV  162 (386)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred             EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE
Confidence            78999999887775          35789999999988877765321       23457899999998887764  6889


Q ss_pred             EEeeCCCCCceEEecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           65 KYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        65 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      .++|..+.+.+..+..+.....+....+.+++.+.||++.+.++.+
T Consensus       163 sVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~  208 (386)
T 3sjl_D          163 GVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGT  208 (386)
T ss_dssp             EEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCS
T ss_pred             EEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCC
Confidence            9999999988887765543333333445666777788887777754

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.16  E-value=5.5e-09  Score=61.60  Aligned_cols=109  Identities=7%  Similarity=-0.131  Sum_probs=77.1

Q ss_pred             eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEE--EccCCCEEEEe----------------------
Q 045566            3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVA--WIPEMNLLATG----------------------   58 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~----------------------   58 (112)
                      ..+|+|+++.|+.++.++.+.+||+.+++.......+...+....  +++++..++..                      
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~  164 (388)
T 3pe7_A           85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFT  164 (388)
T ss_dssp             SCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGG
T ss_pred             ceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhcc
Confidence            468999999999999989999999988876555544444443333  47888887642                      


Q ss_pred             eCCCcEEEeeCCCCCceEEe--cCCCeEEEEee-CCCEEEEEeCC------CcEEEEECcCC
Q 045566           59 SWDKTLKYWDTRQPNPVHTQ--QLPDRCYALTV-RYPLMVVGTAD------RNLVVFNLQNP  111 (112)
Q Consensus        59 ~~~~~i~~w~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~d------~~v~~~d~~~~  111 (112)
                      ..+..|.+||+.+++.....  ........|+| ++..++....+      ..|.++|+..+
T Consensus       165 ~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~  226 (388)
T 3pe7_A          165 KPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT  226 (388)
T ss_dssp             CCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC
T ss_pred             CCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC
Confidence            23467999999887654332  23356788999 99888776653      36778876543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.15  E-value=7.9e-10  Score=70.50  Aligned_cols=108  Identities=14%  Similarity=0.167  Sum_probs=74.7

Q ss_pred             eeEEEcCCCCEEEEEcCC-----CcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCc-------------
Q 045566            2 LCSTWKDDGTTVFSGGCD-----KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKT-------------   63 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-------------   63 (112)
                      ..++|||||++|+.+..+     ..|++||+.+++.... ..+...+..++|+|+ +.++.+..+..             
T Consensus       166 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~  243 (741)
T 1yr2_A          166 DAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQ  243 (741)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCC
T ss_pred             EeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCC
Confidence            467899999998876543     4699999988876432 112222357889999 88877765543             


Q ss_pred             -EEEeeCCCCCc--eEEecCC-----CeEEEEeeCCCEEEEEeCCC-----cEEEEECcCC
Q 045566           64 -LKYWDTRQPNP--VHTQQLP-----DRCYALTVRYPLMVVGTADR-----NLVVFNLQNP  111 (112)
Q Consensus        64 -i~~w~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~d~-----~v~~~d~~~~  111 (112)
                       |++|++.+.+.  ...+...     .....++|+|++++..+.++     .|++||+.++
T Consensus       244 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~  304 (741)
T 1yr2_A          244 TVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG  304 (741)
T ss_dssp             EEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT
T ss_pred             EEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC
Confidence             88999876652  2222221     34678899999888776543     7999998764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.15  E-value=1.3e-08  Score=60.42  Aligned_cols=106  Identities=8%  Similarity=-0.049  Sum_probs=76.4

Q ss_pred             eEEEcCCCCEEEEEc----------CCCcEEEEEcCCCCCcEEEeec-------cCCeeEEEEccCCCEEEEeeC--CCc
Q 045566            3 CSTWKDDGTTVFSGG----------CDKQVKMWPLLSGGQPVTVAMH-------DAPIKEVAWIPEMNLLATGSW--DKT   63 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~----------~~~~v~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~--~~~   63 (112)
                      .++++|++++++++.          .++.|.++|..+.+....+...       ...-..+.++|+|++++.+..  ++.
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            478999999998886          3678999999877776655422       122357899999999988764  578


Q ss_pred             EEEeeCCCCCceEE-ecCCCeEEEEeeCC-CEEEEEeCCCcEEEEECcCC
Q 045566           64 LKYWDTRQPNPVHT-QQLPDRCYALTVRY-PLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        64 i~~w~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~  111 (112)
                      |.++| .+.+.+.. ...+.. ..+.+.+ ..+++.+.|+.+.++|. ++
T Consensus       150 v~viD-~t~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~dg~~~~vd~-~g  196 (373)
T 2mad_H          150 VGLVV-QGGSSDDQLLSSPTC-YHIHPGAPSTFYLLCAQGGLAKTDH-AG  196 (373)
T ss_pred             EEEEE-CCCCEEeEEcCCCce-EEEEeCCCceEEEEcCCCCEEEEEC-CC
Confidence            99999 88887776 654433 3444544 45566677888888887 44

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.15  E-value=4.9e-09  Score=66.62  Aligned_cols=110  Identities=14%  Similarity=0.132  Sum_probs=75.4

Q ss_pred             eeEEEcCCCCEEEEEcCCCc----------------EEEEEcCCCCCc--EEEee--ccCCeeEEEEccCCCEEEEeeC-
Q 045566            2 LCSTWKDDGTTVFSGGCDKQ----------------VKMWPLLSGGQP--VTVAM--HDAPIKEVAWIPEMNLLATGSW-   60 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~----------------v~~~~~~~~~~~--~~~~~--~~~~v~~~~~~~~~~~~~~~~~-   60 (112)
                      ..++|+|||+.|+.++.++.                |.+|++.+++..  ..+..  +...+..+.|+|++++++.... 
T Consensus       174 ~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~  253 (710)
T 2xdw_A          174 SCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIRE  253 (710)
T ss_dssp             CCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEEC
T ss_pred             ceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEc
Confidence            46899999999988877655                999998776533  22222  3445778999999998877654 


Q ss_pred             ----CCcEEEeeCCC------CC-ceEEecC--CCeEEEEeeCCCEEEEEeCC----CcEEEEECcCC
Q 045566           61 ----DKTLKYWDTRQ------PN-PVHTQQL--PDRCYALTVRYPLMVVGTAD----RNLVVFNLQNP  111 (112)
Q Consensus        61 ----~~~i~~w~~~~------~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~d----~~v~~~d~~~~  111 (112)
                          +..+.+||+.+      +. ....+..  ......+++++..++..+..    ..|.+||+.++
T Consensus       254 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~  321 (710)
T 2xdw_A          254 GCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDP  321 (710)
T ss_dssp             SSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSC
T ss_pred             cCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence                56799999875      32 2333322  22334578888877766553    35999998765

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.14  E-value=2.7e-09  Score=60.96  Aligned_cols=97  Identities=10%  Similarity=0.022  Sum_probs=77.0

Q ss_pred             CCCEEEEEcCCCcEEEEEcCCCCCcEEEeecc-CCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCC----Ce
Q 045566            9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHD-APIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP----DR   83 (112)
Q Consensus         9 ~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~----~~   83 (112)
                      .++.+++++.++.|.+||..+++.+.++..+. ..+.++.+.|+|+.++  +.++.+..||. +++.+..+..+    ..
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~   80 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ   80 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence            46789999999999999988999888887655 4688999999999888  34677999998 78877777653    23


Q ss_pred             EEEEeeCCCEEEEEeC-CCcEEEEEC
Q 045566           84 CYALTVRYPLMVVGTA-DRNLVVFNL  108 (112)
Q Consensus        84 ~~~~~~~~~~~~~~~~-d~~v~~~d~  108 (112)
                      ...+.++++.+++.+. ++.+..+|.
T Consensus        81 ~~~~~~dG~~lv~~~~~~~~v~~vd~  106 (276)
T 3no2_A           81 TARILPDGNALVAWCGHPSTILEVNM  106 (276)
T ss_dssp             EEEECTTSCEEEEEESTTEEEEEECT
T ss_pred             ccEECCCCCEEEEecCCCCEEEEEeC
Confidence            4567788999888877 666766654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.11  E-value=8.6e-09  Score=58.98  Aligned_cols=93  Identities=9%  Similarity=-0.069  Sum_probs=71.9

Q ss_pred             eeEEEcCCCC-EEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec-
Q 045566            2 LCSTWKDDGT-TVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ-   79 (112)
Q Consensus         2 ~~~~~~~~~~-~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~-   79 (112)
                      .+++|+|+++ .++++..++.|..|+..++  ...+..+...+.++++++++.++++...++.|.+||..+++...... 
T Consensus        31 eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~  108 (296)
T 3e5z_A           31 EGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADS  108 (296)
T ss_dssp             EEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECE
T ss_pred             cCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeec
Confidence            4688999998 7788888999999998765  55566566778999999999988877777899999997766432221 


Q ss_pred             ------CCCeEEEEeeCCCEEEE
Q 045566           80 ------LPDRCYALTVRYPLMVV   96 (112)
Q Consensus        80 ------~~~~~~~~~~~~~~~~~   96 (112)
                            .....++++++|+++++
T Consensus       109 ~~~~~~~~~~~i~~d~~G~l~vt  131 (296)
T 3e5z_A          109 FEGKKLNSPNDVCLAPDGSLWFS  131 (296)
T ss_dssp             ETTEECCCCCCEEECTTSCEEEE
T ss_pred             cCCCCCCCCCCEEECCCCCEEEE
Confidence                  12346888999987776

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.11  E-value=5.1e-09  Score=59.83  Aligned_cols=109  Identities=11%  Similarity=0.041  Sum_probs=81.7

Q ss_pred             eeEEEcCCCCEEEEEcC-CCcEEEEEcCCCCCcEEEee------ccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCc
Q 045566            2 LCSTWKDDGTTVFSGGC-DKQVKMWPLLSGGQPVTVAM------HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP   74 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~-~~~v~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~   74 (112)
                      .++.+.++|+.+++.+. ++.+..++. +++.+..+..      +......+.+.+++.++++...++.|..||.. ++.
T Consensus        80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~  157 (276)
T 3no2_A           80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL  157 (276)
T ss_dssp             EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE
Confidence            35678889999988776 777777774 5666555532      11234556788899999999999999999998 888


Q ss_pred             eEEecCC--CeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           75 VHTQQLP--DRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        75 ~~~~~~~--~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      +..+...  .......++++.++++..++.|..+|..+++
T Consensus       158 ~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~  197 (276)
T 3no2_A          158 LNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNR  197 (276)
T ss_dssp             EEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCC
T ss_pred             EEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCc
Confidence            8777543  3455667788888888888889999988764

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.11  E-value=3.8e-10  Score=66.56  Aligned_cols=110  Identities=6%  Similarity=-0.013  Sum_probs=70.0

Q ss_pred             eeEEEcCCCCEEEEEcC---CCcEEEEEcCCCCCcEEEeeccCC-eeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE
Q 045566            2 LCSTWKDDGTTVFSGGC---DKQVKMWPLLSGGQPVTVAMHDAP-IKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT   77 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~   77 (112)
                      ..++|+|+|++++....   +..+.+|++.+++.. .+...... .....|+|+++.++....++.+.+||+.+++....
T Consensus        39 ~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~  117 (396)
T 3c5m_A           39 YQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV-QLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI  117 (396)
T ss_dssp             TSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE-ECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             ecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE-EeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence            35689999998876643   246888887765542 33322222 23377999999999988888999999988765444


Q ss_pred             ecCCCe------E----------------EEEeeCCCEEEEE-----eCCCcEEEEECcCCC
Q 045566           78 QQLPDR------C----------------YALTVRYPLMVVG-----TADRNLVVFNLQNPQ  112 (112)
Q Consensus        78 ~~~~~~------~----------------~~~~~~~~~~~~~-----~~d~~v~~~d~~~~~  112 (112)
                      ...+..      .                ..++|+++.++..     ..+..|.+||+.+++
T Consensus       118 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~  179 (396)
T 3c5m_A          118 YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE  179 (396)
T ss_dssp             EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC
T ss_pred             EecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCc
Confidence            332211      0                1234455444332     345678889987653

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.10  E-value=3.9e-09  Score=62.97  Aligned_cols=103  Identities=10%  Similarity=-0.007  Sum_probs=73.4

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCC-----------CcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG-----------QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT   69 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~   69 (112)
                      ++.+++++....+++|+.++ +.+|++....           +.... .... |+.++|  ++.+++.+ .++.|++||+
T Consensus        40 ~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv  113 (388)
T 1xip_A           40 LQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLDL  113 (388)
T ss_dssp             CBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred             ccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence            46789999999999999874 5569864222           22223 3555 999999  88899888 8899999998


Q ss_pred             CCCCceE---EecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           70 RQPNPVH---TQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        70 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      ++.....   .+.....  .+.+..+.++++..||.+.+||+.++
T Consensus       114 ~sl~~~~~~~~~~~~v~--~i~~~~p~~av~~~dG~L~v~dl~~~  156 (388)
T 1xip_A          114 EELSEFRTVTSFEKPVF--QLKNVNNTLVILNSVNDLSALDLRTK  156 (388)
T ss_dssp             SSTTCEEEEEECSSCEE--EEEECSSEEEEEETTSEEEEEETTTC
T ss_pred             hhhhccCccceeeccee--eEEecCCCEEEEECCCCEEEEEccCC
Confidence            7655332   3333333  33344445888999999999999865

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.10  E-value=1.5e-08  Score=60.18  Aligned_cols=103  Identities=16%  Similarity=0.006  Sum_probs=77.5

Q ss_pred             cCCCCEEEEEcC--CC---cEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEee----------CCCcEEEeeCCC
Q 045566            7 KDDGTTVFSGGC--DK---QVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGS----------WDKTLKYWDTRQ   71 (112)
Q Consensus         7 ~~~~~~l~~~~~--~~---~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------~~~~i~~w~~~~   71 (112)
                      .|+++++++...  ..   .|.++|..+++.+.+++....+  .+.++|++++++.+.          .++.|.++|..+
T Consensus        29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t  106 (373)
T 2mad_H           29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT  106 (373)
T ss_pred             CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence            467787777764  32   7899999888877676644333  899999999888775          367799999988


Q ss_pred             CCceEEecCC----------CeEEEEeeCCCEEEEEeC--CCcEEEEECcCCC
Q 045566           72 PNPVHTQQLP----------DRCYALTVRYPLMVVGTA--DRNLVVFNLQNPQ  112 (112)
Q Consensus        72 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~--d~~v~~~d~~~~~  112 (112)
                      .+.+......          ...+.++|+++++++++.  +..|.++| .+++
T Consensus       107 ~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~  158 (373)
T 2mad_H          107 FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGS  158 (373)
T ss_pred             CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCC
Confidence            7776655332          246889999999999874  47799999 7764

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.06  E-value=5.5e-10  Score=64.77  Aligned_cols=108  Identities=4%  Similarity=0.005  Sum_probs=79.5

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe--
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ--   78 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~--   78 (112)
                      |.+++|++++..++..+.++.++.|.   .+....+..+...+.+++|++++.+++++..++.|.+||..+++.....  
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~   84 (333)
T 2dg1_A            8 LPTLFYSGKSNSAVPIISESELQTIT---AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVS   84 (333)
T ss_dssp             CCBCCSCGGGGCSSCCCCGGGSCEEE---CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC
T ss_pred             cceeeecCCccceeEEeecccCcccc---cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeC
Confidence            45678888877776667778888883   3344455556667789999999998888888999999999877654432  


Q ss_pred             -cCCCeEEEEeeCCCEEEEEeCC----CcEEEEECcCC
Q 045566           79 -QLPDRCYALTVRYPLMVVGTAD----RNLVVFNLQNP  111 (112)
Q Consensus        79 -~~~~~~~~~~~~~~~~~~~~~d----~~v~~~d~~~~  111 (112)
                       ......+++++++.++++...+    +.|.+||..++
T Consensus        85 ~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~  122 (333)
T 2dg1_A           85 HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  122 (333)
T ss_dssp             SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             CCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCC
Confidence             1234678888999877776665    68999987654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.04  E-value=1.4e-08  Score=57.22  Aligned_cols=109  Identities=13%  Similarity=-0.034  Sum_probs=76.8

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec--
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ--   79 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~--   79 (112)
                      ..++++++++.+++...++.|.+|+..+................+++++++..+++...++.|..|+...........  
T Consensus       111 ~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~  190 (270)
T 1rwi_B          111 EGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTD  190 (270)
T ss_dssp             EEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSS
T ss_pred             cceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccC
Confidence            468899999877777778889999754433322222223456889999999888877778899999987665433221  


Q ss_pred             -CCCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           80 -LPDRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        80 -~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                       .....+++++++..+++...++.|..||...
T Consensus       191 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~  222 (270)
T 1rwi_B          191 ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS  222 (270)
T ss_dssp             CCSEEEEEECTTCCEEEEETTTSCEEEECTTC
T ss_pred             CCCceEEEECCCCCEEEEECCCCcEEEEcCCC
Confidence             2235678888887666666788999998754

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.02  E-value=1.1e-08  Score=59.59  Aligned_cols=102  Identities=8%  Similarity=0.089  Sum_probs=64.9

Q ss_pred             eeEEEcCCCCEEEEEcCC---------------------------CcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCE
Q 045566            2 LCSTWKDDGTTVFSGGCD---------------------------KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNL   54 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~---------------------------~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   54 (112)
                      ..++|+|+|+.|+.++.+                           ..|.+|++.+++....+.. . .+..+.|+|++ .
T Consensus       107 ~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~  183 (347)
T 2gop_A          107 RSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-I  183 (347)
T ss_dssp             EEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-E
T ss_pred             cceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-E
Confidence            578999999988877632                           5688899877665344444 3 78899999999 7


Q ss_pred             EEEeeCCC-------cEEEeeCCCCCceEEecCCCeEEEEeeCCCEEEEEeCC--------CcEEEEE
Q 045566           55 LATGSWDK-------TLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTAD--------RNLVVFN  107 (112)
Q Consensus        55 ~~~~~~~~-------~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--------~~v~~~d  107 (112)
                      ++++..+.       ...+|.+.+++. ..+........++|+++.++..+.+        ..|.+||
T Consensus       184 ~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d  250 (347)
T 2gop_A          184 VVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEKVSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD  250 (347)
T ss_dssp             EEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEEESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred             EEEEecccccccccccccEEEeCCCce-EEeccCcceeeECCCCCEEEEEEccccCCccccceEEEEC
Confidence            77765432       334444333332 2221112233448999988777654        3577776

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.01  E-value=8.6e-08  Score=54.85  Aligned_cols=106  Identities=7%  Similarity=-0.003  Sum_probs=73.8

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcC-CCCC---cEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLL-SGGQ---PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT   77 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~-~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~   77 (112)
                      ..++|+|+++.+++.+.++.|.+|++. .++.   ...+..+...+..++++++|.++++.  ++.|.+|+.. ++.+..
T Consensus       175 ~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~  251 (296)
T 3e5z_A          175 NGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGR  251 (296)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEE
T ss_pred             ccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEE
Confidence            468999999988777888999999986 3332   12222234456789999999877766  7889999986 555544


Q ss_pred             ecC--CCeEEEE-eeCCCEEEEEeCCCcEEEEECcCC
Q 045566           78 QQL--PDRCYAL-TVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        78 ~~~--~~~~~~~-~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      +..  ....++| .+++..|++++.++ +.-++.++.
T Consensus       252 ~~~~~~~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~  287 (296)
T 3e5z_A          252 VLTPQTTSNLCFGGPEGRTLYMTVSTE-FWSIETNVR  287 (296)
T ss_dssp             EECSSCCCEEEEESTTSCEEEEEETTE-EEEEECSCC
T ss_pred             EECCCCceeEEEECCCCCEEEEEcCCe-EEEEEcccc
Confidence            433  2567778 47888888888764 545555543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.00  E-value=1.7e-08  Score=64.07  Aligned_cols=109  Identities=6%  Similarity=-0.009  Sum_probs=71.1

Q ss_pred             eeEEEcCCCCEEEEEcCCCc-------------EEEEEcCCCCCc--EEEe--eccCCeeEEEEccCCCEEEEeeCCC--
Q 045566            2 LCSTWKDDGTTVFSGGCDKQ-------------VKMWPLLSGGQP--VTVA--MHDAPIKEVAWIPEMNLLATGSWDK--   62 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~-------------v~~~~~~~~~~~--~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~--   62 (112)
                      ..++|+|+|+.|+.++.+..             |++|++.++...  ..+.  .+...+..+.|+|+|++++....++  
T Consensus       171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~  250 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWS  250 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTT
T ss_pred             cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCC
Confidence            46899999999998887665             999998876632  2222  2345788999999999887776555  


Q ss_pred             --cEEEeeCCCCCceEEe--cCCCeEEEEeeCCCEEEEEe---CCCcEEEEECcCC
Q 045566           63 --TLKYWDTRQPNPVHTQ--QLPDRCYALTVRYPLMVVGT---ADRNLVVFNLQNP  111 (112)
Q Consensus        63 --~i~~w~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~d~~v~~~d~~~~  111 (112)
                        .+.+++..+++.....  ........+ +++.+++...   .++.|.+||+.++
T Consensus       251 ~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~  305 (695)
T 2bkl_A          251 ENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKP  305 (695)
T ss_dssp             EEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBC
T ss_pred             ceEEEEEcCCCCceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCC
Confidence              5777766544332222  222333334 5666444443   2578999998764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.99  E-value=3.6e-08  Score=57.48  Aligned_cols=104  Identities=5%  Similarity=-0.105  Sum_probs=76.3

Q ss_pred             eEEEcCCCCEEEEEc--CCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCC----------CcEEEeeCC
Q 045566            3 CSTWKDDGTTVFSGG--CDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWD----------KTLKYWDTR   70 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----------~~i~~w~~~   70 (112)
                      .+++  ++..++++.  .++.|.++|..+++....+... .....+.++|+++++++...+          +.|.++|..
T Consensus       135 ~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~  211 (328)
T 3dsm_A          135 QMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE  211 (328)
T ss_dssp             CEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT
T ss_pred             eEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECC
Confidence            3455  344444444  4789999999888776666532 344678899999988777654          789999998


Q ss_pred             CCCceEEecC----CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           71 QPNPVHTQQL----PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        71 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      +.+....+..    ....++++|++..++++..  .|.+||..++
T Consensus       212 t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~  254 (328)
T 3dsm_A          212 TFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEAD  254 (328)
T ss_dssp             TTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCS
T ss_pred             CCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCC
Confidence            8876655543    3578899999998888765  8999998765

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.98  E-value=1.5e-07  Score=53.61  Aligned_cols=110  Identities=12%  Similarity=0.065  Sum_probs=78.2

Q ss_pred             eeEEEcCCCCEEEEEcC--CCcEEEEEcCCCCCcEEEeeccC-CeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566            2 LCSTWKDDGTTVFSGGC--DKQVKMWPLLSGGQPVTVAMHDA-PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ   78 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~--~~~v~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~   78 (112)
                      ..+.|++++...++.+.  ++.|++.|+.+++....+..... ....+.+. .+..+++.-.++.+.++|..+.+.+..+
T Consensus        24 ~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t~~v~~~i  102 (266)
T 2iwa_A           24 QGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL-NEKLYQVVWLKNIGFIYDRRTLSNIKNF  102 (266)
T ss_dssp             EEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEETTCSEEEEEETTTTEEEEEE
T ss_pred             ccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe-CCEEEEEEecCCEEEEEECCCCcEEEEE
Confidence            35789988755554443  57999999999998777653222 22344444 2344455556889999999998888877


Q ss_pred             cCC-CeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           79 QLP-DRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        79 ~~~-~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      ... .....+.+++..++++..++.+.++|..+.+
T Consensus       103 ~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~  137 (266)
T 2iwa_A          103 THQMKDGWGLATDGKILYGSDGTSILYEIDPHTFK  137 (266)
T ss_dssp             ECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCC
T ss_pred             ECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCc
Confidence            655 4556678888888888888899999988753

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.97  E-value=1.6e-08  Score=64.22  Aligned_cols=108  Identities=13%  Similarity=0.127  Sum_probs=72.2

Q ss_pred             eeEEEcCCCCEEEEE-----cCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCC-------------c
Q 045566            2 LCSTWKDDGTTVFSG-----GCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDK-------------T   63 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-------------~   63 (112)
                      ..++|||+|++++.+     +....|+++|+.+++..... ........++|+ |++.++.+..+.             .
T Consensus       132 ~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~  209 (693)
T 3iuj_A          132 DQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHK  209 (693)
T ss_dssp             EEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCE
T ss_pred             EEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcE
Confidence            467899999988853     33467999999988754321 111113567899 999888777663             3


Q ss_pred             EEEeeCCCCCc--eEEecCC------CeEEEEeeCCCEEEEEeC----CCcEEEEECcCC
Q 045566           64 LKYWDTRQPNP--VHTQQLP------DRCYALTVRYPLMVVGTA----DRNLVVFNLQNP  111 (112)
Q Consensus        64 i~~w~~~~~~~--~~~~~~~------~~~~~~~~~~~~~~~~~~----d~~v~~~d~~~~  111 (112)
                      |++|++.+.+.  ...+...      .....+++++++++....    +..++++|+.++
T Consensus       210 v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~  269 (693)
T 3iuj_A          210 VYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQE  269 (693)
T ss_dssp             EEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTST
T ss_pred             EEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCC
Confidence            89999877643  2222222      245678999998755433    247899998665

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.96  E-value=8e-08  Score=56.01  Aligned_cols=104  Identities=7%  Similarity=0.036  Sum_probs=74.0

Q ss_pred             EEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCC--
Q 045566            4 STWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP--   81 (112)
Q Consensus         4 ~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~--   81 (112)
                      +++. +++..++...++.|.++|..+++.+.++. .......+++++++..+++...++.|.++|..+.+....+...  
T Consensus        49 i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~  126 (328)
T 3dsm_A           49 MVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDM  126 (328)
T ss_dssp             EEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTC
T ss_pred             EEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCc
Confidence            4443 34555666667899999999988877775 3456788999888866555557899999999988766554422  


Q ss_pred             ------CeEEEEeeCCCEEEEEe--CCCcEEEEECcCC
Q 045566           82 ------DRCYALTVRYPLMVVGT--ADRNLVVFNLQNP  111 (112)
Q Consensus        82 ------~~~~~~~~~~~~~~~~~--~d~~v~~~d~~~~  111 (112)
                            ...+++  ++..++++.  .++.|.++|++++
T Consensus       127 ~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~  162 (328)
T 3dsm_A          127 DMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETD  162 (328)
T ss_dssp             CTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTT
T ss_pred             cccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCC
Confidence                  234555  455566655  4789999998875

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.94  E-value=2.1e-08  Score=60.61  Aligned_cols=102  Identities=16%  Similarity=0.071  Sum_probs=80.0

Q ss_pred             CCCCEEEEEcCC-----CcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEee----------CCCcEEEeeCCCC
Q 045566            8 DDGTTVFSGGCD-----KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGS----------WDKTLKYWDTRQP   72 (112)
Q Consensus         8 ~~~~~l~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------~~~~i~~w~~~~~   72 (112)
                      ++++.+++....     +.|.++|..+.+.+.+++.-..+  .+.++|+++.++.+.          .++.|.++|..+.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            366766666542     68999999999988888765555  899999999777665          3678999999999


Q ss_pred             CceEEecCC----------CeEEEEeeCCCEEEEEeC--CCcEEEEECcCC
Q 045566           73 NPVHTQQLP----------DRCYALTVRYPLMVVGTA--DRNLVVFNLQNP  111 (112)
Q Consensus        73 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~--d~~v~~~d~~~~  111 (112)
                      +.+..+..+          ...+.++|++++++++..  ++.|.+.|+.+.
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~  210 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGK  210 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTT
T ss_pred             cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCC
Confidence            887765432          246789999999999875  578999999875

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.93  E-value=1.2e-07  Score=53.88  Aligned_cols=106  Identities=14%  Similarity=0.048  Sum_probs=78.6

Q ss_pred             eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeE--EEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKE--VAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      .+.|+ ++.+..+.+.++.|+.+|+.+++....+ -. .....  +.+.. ...+...-.++.+.++|..+.+.+..+..
T Consensus        59 GL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~  134 (268)
T 3nok_A           59 GLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRY  134 (268)
T ss_dssp             EEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEEC
T ss_pred             eEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeC
Confidence            45666 3566677788889999999999988776 22 23233  44432 34444555688999999999998888876


Q ss_pred             CCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           81 PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      ......+.+++..|+.+..++.|.++|..+.+
T Consensus       135 ~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~  166 (268)
T 3nok_A          135 SGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFA  166 (268)
T ss_dssp             SSCCCCEEEETTEEEEECSSSEEEEECTTTCC
T ss_pred             CCceeEEecCCCEEEEECCCCEEEEEcCCCCe
Confidence            66556667888889888888999999988754

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.92  E-value=1.2e-07  Score=56.99  Aligned_cols=108  Identities=11%  Similarity=-0.008  Sum_probs=75.9

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCC--cEEEeeCCCCCceEEe-
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDK--TLKYWDTRQPNPVHTQ-   78 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~i~~w~~~~~~~~~~~-   78 (112)
                      ..++|+++++++++...++.|+.||..++........ ..... ++|++++..++.+..++  .|..++.......... 
T Consensus       134 ~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g  211 (409)
T 3hrp_A          134 WGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIG  211 (409)
T ss_dssp             EEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEE
T ss_pred             eEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEee
Confidence            4688999999888888889999999875544333332 23334 89999999888877755  7888887665443332 


Q ss_pred             ---c---CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           79 ---Q---LPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        79 ---~---~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                         .   .....++++|++..++.+..++.|+.||..++
T Consensus       212 ~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~  250 (409)
T 3hrp_A          212 QLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQ  250 (409)
T ss_dssp             ECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTC
T ss_pred             eccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCC
Confidence               1   23356888885555666777888999998654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.90  E-value=9e-08  Score=57.89  Aligned_cols=105  Identities=11%  Similarity=0.077  Sum_probs=74.8

Q ss_pred             eEEEcCCCCEEEEEc----------CCCcEEEEEcCCCCCcEEEeec-------cCCeeEEEEccCCCEEEEeeC--CCc
Q 045566            3 CSTWKDDGTTVFSGG----------CDKQVKMWPLLSGGQPVTVAMH-------DAPIKEVAWIPEMNLLATGSW--DKT   63 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~----------~~~~v~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~--~~~   63 (112)
                      .+.++|++++++++.          .++.|.++|..+.+....+...       ......+.++|++++++.+..  ++.
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~  201 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA  201 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence            478999999888876          3678999999998887776532       123457889999999888764  578


Q ss_pred             EEEeeCCCCCceEEecCCCeEEEEeeCC-CEEEEEeCCCcEEEEEC
Q 045566           64 LKYWDTRQPNPVHTQQLPDRCYALTVRY-PLMVVGTADRNLVVFNL  108 (112)
Q Consensus        64 i~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~v~~~d~  108 (112)
                      |.+.|..+.+.+..+..+.. ....|.+ ..+++.+.||++.+.++
T Consensus       202 VsVID~~t~kvv~~I~v~g~-~~~~p~g~~~~v~~~~dG~~~~V~~  246 (426)
T 3c75_H          202 VGVVDLEGKTFDRMLDVPDC-YHIFPASPTVFYMNCRDGSLARVDF  246 (426)
T ss_dssp             EEEEETTTTEEEEEEECCSE-EEEEEEETTEEEEEETTSSEEEEEC
T ss_pred             EEEEECCCCeEEEEEEcCCc-eeeccCCCcEEEEEcCCCCEEEEEC
Confidence            99999999888777765433 2233332 44555566666666555

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.88  E-value=2.4e-07  Score=53.17  Aligned_cols=109  Identities=7%  Similarity=0.013  Sum_probs=74.6

Q ss_pred             eeEEEc----CCCCEEEEE-cCCCcEEEEEcC-CCCC-----cEEEeecc-CCeeEEEEccCCCEEEEeeCCCcEEEeeC
Q 045566            2 LCSTWK----DDGTTVFSG-GCDKQVKMWPLL-SGGQ-----PVTVAMHD-APIKEVAWIPEMNLLATGSWDKTLKYWDT   69 (112)
Q Consensus         2 ~~~~~~----~~~~~l~~~-~~~~~v~~~~~~-~~~~-----~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~i~~w~~   69 (112)
                      ..++|+    |+++.++.+ ..++.|.+|+.. .++.     ...+..+. .....+++++++.++++...++.|..||.
T Consensus       175 ~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~  254 (314)
T 1pjx_A          175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP  254 (314)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             ceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcC
Confidence            357788    888765444 567899999975 2321     11122222 45678999999998888878889999998


Q ss_pred             CCCCceEEecC---CCeEEEEeeCCCEEEEE-eCCCcEEEEECcC
Q 045566           70 RQPNPVHTQQL---PDRCYALTVRYPLMVVG-TADRNLVVFNLQN  110 (112)
Q Consensus        70 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~d~~v~~~d~~~  110 (112)
                      .+++.+..+..   ....++++++++.++++ ..++.|..|++..
T Consensus       255 ~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          255 DGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             TCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            86655444433   34577888899855554 4567899998764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.87  E-value=2.4e-07  Score=52.67  Aligned_cols=103  Identities=9%  Similarity=-0.031  Sum_probs=74.5

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe--eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA--MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      .+++++++|+.+++...++.|..|+.. ++ ...+.  .....+..+++++++..+++...++.|..|+... + ...+.
T Consensus        18 ~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~-~~~~~   93 (299)
T 2z2n_A           18 YGITVSDKGKVWITQHKANMISCINLD-GK-ITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKG-I-IKEYT   93 (299)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-C-EEEEE
T ss_pred             cceEECCCCCEEEEecCCCcEEEEcCC-CC-eEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-c-EEEEe
Confidence            578899999988777767899999976 43 33322  2446788999999999888877788899998762 2 22222


Q ss_pred             C-----CCeEEEEeeCCCEEEEEeCCCcEEEEEC
Q 045566           80 L-----PDRCYALTVRYPLMVVGTADRNLVVFNL  108 (112)
Q Consensus        80 ~-----~~~~~~~~~~~~~~~~~~~d~~v~~~d~  108 (112)
                      .     ....+++++++..+++...++.|..||.
T Consensus        94 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~  127 (299)
T 2z2n_A           94 LPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD  127 (299)
T ss_dssp             CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             CCCcCCCceeeEECCCCCEEEEecCCceEEEECC
Confidence            1     2356777888877777667788988886

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.86  E-value=3.1e-07  Score=52.20  Aligned_cols=104  Identities=11%  Similarity=0.021  Sum_probs=73.7

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe--eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE-e
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA--MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT-Q   78 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~-~   78 (112)
                      ..+++++++..+++...++.|..|+.. ++ ...+.  .....+..+.+.+++..+++...++.+..||. +++.... .
T Consensus        60 ~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~  136 (299)
T 2z2n_A           60 MCLTISSDGEVWFTENAANKIGRITKK-GI-IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYEL  136 (299)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTT-SC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEEC
T ss_pred             eeEEECCCCCEEEeCCCCCeEEEECCC-Cc-EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecC
Confidence            467888999988877778889999865 32 22222  23456889999999988888777888999998 4433221 1


Q ss_pred             c---CCCeEEEEeeCCCEEEEEeCCCcEEEEEC
Q 045566           79 Q---LPDRCYALTVRYPLMVVGTADRNLVVFNL  108 (112)
Q Consensus        79 ~---~~~~~~~~~~~~~~~~~~~~d~~v~~~d~  108 (112)
                      .   .....+++++++..+++...++.|..||.
T Consensus       137 ~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~  169 (299)
T 2z2n_A          137 PNKGSYPSFITLGSDNALWFTENQNNAIGRITE  169 (299)
T ss_dssp             SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             CCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC
Confidence            1   12356778888877766666788888887

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.86  E-value=2.4e-07  Score=52.51  Aligned_cols=108  Identities=10%  Similarity=0.069  Sum_probs=77.6

Q ss_pred             eEEEcCCCCEEEEEcCCC--cEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEE-EEeeCCCcEEEeeCCCCCceEEec
Q 045566            3 CSTWKDDGTTVFSGGCDK--QVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLL-ATGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      .+.|+ ++.++.+.+.++  .|+.+|+.+++....+.... ........+.+..+ ...-.++.+.++|..+.+.+..+.
T Consensus        47 GL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~  124 (262)
T 3nol_A           47 GFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFN  124 (262)
T ss_dssp             EEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred             eEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEE
Confidence            46777 566666666665  89999999999887765432 22332233334444 444458889999999999998887


Q ss_pred             CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           80 LPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      .+.....+.+++..++.+..++.|.++|..+.+
T Consensus       125 ~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~  157 (262)
T 3nol_A          125 YDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLT  157 (262)
T ss_dssp             CSSCCCCEEECSSCEEECCSSSEEEEECTTTCS
T ss_pred             CCCCceEEecCCCEEEEECCCCeEEEEcCCCCe
Confidence            766666777888888888778889999988753

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.85  E-value=6.6e-07  Score=50.27  Aligned_cols=108  Identities=13%  Similarity=0.052  Sum_probs=77.3

Q ss_pred             eEEEcCCCCEEEEEcCC--CcEEEEEcCCCCCcEEEeeccCCe-eEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566            3 CSTWKDDGTTVFSGGCD--KQVKMWPLLSGGQPVTVAMHDAPI-KEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      .+.|++ +.+..+.+..  ..|+.+|+.+++............ ..+... .+..+...-.++.+.++|..+.+.+..+.
T Consensus        25 GL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~~~ti~  102 (243)
T 3mbr_X           25 GLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTPRARFR  102 (243)
T ss_dssp             EEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred             cEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcEEEEEe
Confidence            467775 5555666654  489999999998887765332221 223333 23444455568899999999999888887


Q ss_pred             CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           80 LPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      .+.....+.+++..++++..++.|.++|..+.+
T Consensus       103 ~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~  135 (243)
T 3mbr_X          103 YPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQ  135 (243)
T ss_dssp             CSSCCCEEEECSSCEEEECSSSEEEEECTTTCC
T ss_pred             CCCCceEEeeCCCEEEEECCCCeEEEEeCCCCe
Confidence            766667777888888888888999999988753

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.83  E-value=6.6e-10  Score=65.82  Aligned_cols=101  Identities=13%  Similarity=0.096  Sum_probs=60.3

Q ss_pred             CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCCe-----
Q 045566            9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDR-----   83 (112)
Q Consensus         9 ~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~-----   83 (112)
                      ++..+++++.|+.|..||..+++....+..  ..+.+..+..++..++.++.|+.++.||..+++.+........     
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            678899999999999999999998877765  4444444555677777888999999999988876655433210     


Q ss_pred             EEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           84 CYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        84 ~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      ...+. .+..+++++.++.++.||.++|+
T Consensus        86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~  113 (369)
T 2hz6_A           86 SPCRS-SDGILYMGKKQDIWYVIDLLTGE  113 (369)
T ss_dssp             CSCC------CCCCEEEEEEEEECCC---
T ss_pred             CceEe-cCCEEEEEeCCCEEEEEECCCCc
Confidence            11111 23456667777778888877663

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.82  E-value=3.5e-07  Score=52.49  Aligned_cols=108  Identities=11%  Similarity=0.017  Sum_probs=71.6

Q ss_pred             eeEEEcCCCCEEEEEcCC---------------CcEEEEEcCCCCCcEEEeeccCCeeEEEEc----cCCCEE-EEeeCC
Q 045566            2 LCSTWKDDGTTVFSGGCD---------------KQVKMWPLLSGGQPVTVAMHDAPIKEVAWI----PEMNLL-ATGSWD   61 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~---------------~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~-~~~~~~   61 (112)
                      .+++++++|+.+++...+               +.|..++.. ++ ...+.........++++    |+++.+ ++...+
T Consensus       120 ~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~  197 (314)
T 1pjx_A          120 NDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ-MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPT  197 (314)
T ss_dssp             CEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC-EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTT
T ss_pred             cCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC-EEEeccCCCCcceEEEecccCCCCCEEEEEECCC
Confidence            578899999888777654               456666654 33 33333344456789999    988655 444567


Q ss_pred             CcEEEeeCC-CCC-----ceEEec----CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           62 KTLKYWDTR-QPN-----PVHTQQ----LPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        62 ~~i~~w~~~-~~~-----~~~~~~----~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      +.|.+|+.. +++     ....+.    .....+++++++.++++...++.|..||.+++
T Consensus       198 ~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g  257 (314)
T 1pjx_A          198 KKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGG  257 (314)
T ss_dssp             TEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCB
T ss_pred             CeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCC
Confidence            889999976 332     112222    12346778888987777777889999998743

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.80  E-value=4.8e-07  Score=57.95  Aligned_cols=109  Identities=10%  Similarity=0.029  Sum_probs=70.8

Q ss_pred             eeEEEcCCCCEEEEEcCCCc--------------EEEEEcCCCCCc--EEEee--ccCCeeEEEEccCCCEEEEeeCC--
Q 045566            2 LCSTWKDDGTTVFSGGCDKQ--------------VKMWPLLSGGQP--VTVAM--HDAPIKEVAWIPEMNLLATGSWD--   61 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~--------------v~~~~~~~~~~~--~~~~~--~~~~v~~~~~~~~~~~~~~~~~~--   61 (112)
                      ..++|+|+ +.|+.++.+..              |.+|++.++...  ..+..  +...+..+.|+|+|++++....+  
T Consensus       212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~  290 (741)
T 1yr2_A          212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGT  290 (741)
T ss_dssp             CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTT
T ss_pred             ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccC
Confidence            46789999 88888766543              888988765532  22222  22347899999999988776644  


Q ss_pred             ---CcEEEeeCCCC--CceEEecC--CCeEEEEeeCCCEEEEEeCC----CcEEEEECcCC
Q 045566           62 ---KTLKYWDTRQP--NPVHTQQL--PDRCYALTVRYPLMVVGTAD----RNLVVFNLQNP  111 (112)
Q Consensus        62 ---~~i~~w~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~d----~~v~~~d~~~~  111 (112)
                         ..+.+||+.++  +....+..  ......+.+++..++..+.+    +.|.+||+.++
T Consensus       291 ~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~  351 (741)
T 1yr2_A          291 DPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGS  351 (741)
T ss_dssp             CSCCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred             CCcceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence               37999998765  31222221  12222345888888777653    45999998763

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.74  E-value=1.6e-06  Score=49.86  Aligned_cols=98  Identities=15%  Similarity=0.119  Sum_probs=69.9

Q ss_pred             eeEEEcCCCCEEE-EEcCCCcEEEEEcC--CCCCc--EEE---eeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC
Q 045566            2 LCSTWKDDGTTVF-SGGCDKQVKMWPLL--SGGQP--VTV---AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN   73 (112)
Q Consensus         2 ~~~~~~~~~~~l~-~~~~~~~v~~~~~~--~~~~~--~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~   73 (112)
                      +.++|+|+++.++ +.+.++.|..|++.  ++...  ..+   .........++++++|.++++....+.|..||..+++
T Consensus       152 ngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~  231 (297)
T 3g4e_A          152 NGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGK  231 (297)
T ss_dssp             EEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCC
T ss_pred             cceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCce
Confidence            4689999998764 45667889999873  34321  111   2233456789999999988888778889999998888


Q ss_pred             ceEEecCC---CeEEEEe-eCCCEEEEEeC
Q 045566           74 PVHTQQLP---DRCYALT-VRYPLMVVGTA   99 (112)
Q Consensus        74 ~~~~~~~~---~~~~~~~-~~~~~~~~~~~   99 (112)
                      .+..+..+   ...++|. +++..|++++.
T Consensus       232 ~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          232 RLQTVKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             EEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence            77766554   3678887 77777666554

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.73  E-value=1.1e-07  Score=56.49  Aligned_cols=87  Identities=8%  Similarity=-0.162  Sum_probs=69.9

Q ss_pred             cEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEee----------CCCcEEEeeCCCCCceEEecCC---------
Q 045566           21 QVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGS----------WDKTLKYWDTRQPNPVHTQQLP---------   81 (112)
Q Consensus        21 ~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------~~~~i~~w~~~~~~~~~~~~~~---------   81 (112)
                      .|.+.|..+.+.+.++.....+  .+.++|+++.++.+.          .++.|.+||..+.+.+..+..+         
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~  124 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence            7889999999988888765556  799999998887775          3688999999999988776432         


Q ss_pred             -CeEEEEeeCCCEEEEEeC--CCcEEE--EECc
Q 045566           82 -DRCYALTVRYPLMVVGTA--DRNLVV--FNLQ  109 (112)
Q Consensus        82 -~~~~~~~~~~~~~~~~~~--d~~v~~--~d~~  109 (112)
                       ...+.++|++++++++..  +..+.+  +|+.
T Consensus       125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~  157 (368)
T 1mda_H          125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGAS  157 (368)
T ss_dssp             CTTSEEECTTSSCEEEEECSSSCEEEEEETTTE
T ss_pred             CcceEEEcCCCCEEEEEccCCCCeEEEEEEchh
Confidence             457899999999999875  345777  7764

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.70  E-value=2.1e-06  Score=48.81  Aligned_cols=106  Identities=8%  Similarity=-0.030  Sum_probs=74.2

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcE-EEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceE-Eec
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV-TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVH-TQQ   79 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~-~~~   79 (112)
                      .+++++++++..++...++.|..++.. ++... .+......+..+++.+++..+++...++.|..+|.. ++... ...
T Consensus        23 ~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~  100 (300)
T 2qc5_A           23 YGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLP  100 (300)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECS
T ss_pred             ceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCC
Confidence            467889999988877778899999976 43322 122233568899999999888877778889999987 44321 111


Q ss_pred             ---CCCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           80 ---LPDRCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        80 ---~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                         .....+++.+++..+++...++.|..+|..
T Consensus       101 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~  133 (300)
T 2qc5_A          101 QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD  133 (300)
T ss_dssp             STTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred             CCCCCCccceECCCCCEEEEccCCCeEEEECCC
Confidence               123567777888877766667788888764

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.70  E-value=2.1e-06  Score=51.65  Aligned_cols=109  Identities=4%  Similarity=-0.063  Sum_probs=71.4

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEE-----eeccCC--eeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCC
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTV-----AMHDAP--IKEVAWIP-EMNLLATGSWDKTLKYWDTRQPN   73 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~--v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~   73 (112)
                      .+++++|++..|+.+..++.|..|+...+.. ..+     ......  ...++|+| ++.++++-..++.|+.|+.....
T Consensus       222 ~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~-~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~  300 (409)
T 3hrp_A          222 GAVALDETEEWLYFVDSNKNFGRFNVKTQEV-TLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGEC  300 (409)
T ss_dssp             CBCEECTTSSEEEEECTTCEEEEEETTTCCE-EEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCE
T ss_pred             EEEEEeCCCCeEEEEECCCcEEEEECCCCCE-EEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCE
Confidence            4688999555555577788999999876553 222     111111  23899999 56677777778889999876431


Q ss_pred             ceEEec----------------CCCeEEEEeeCCCEEEEEe-CCCcEEEEECcCC
Q 045566           74 PVHTQQ----------------LPDRCYALTVRYPLMVVGT-ADRNLVVFNLQNP  111 (112)
Q Consensus        74 ~~~~~~----------------~~~~~~~~~~~~~~~~~~~-~d~~v~~~d~~~~  111 (112)
                      ....-.                .....+++++++.++++-. .++.|+.||+.++
T Consensus       301 ~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G  355 (409)
T 3hrp_A          301 EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG  355 (409)
T ss_dssp             EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT
T ss_pred             EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC
Confidence            111111                1135688999999777766 7889999996554

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.69  E-value=2.2e-06  Score=48.73  Aligned_cols=104  Identities=9%  Similarity=-0.017  Sum_probs=72.9

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe--eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE-e
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA--MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT-Q   78 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~-~   78 (112)
                      ..++++++++.+++...++.|..+|.. ++. ..+.  .....+..+++.+++.++++...++.|..++.. ++.... .
T Consensus        65 ~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~  141 (300)
T 2qc5_A           65 MCLIVSSLGDIWFTENGANKIGKLSKK-GGF-TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDL  141 (300)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEEC
T ss_pred             eeEEECCCCCEEEEecCCCeEEEECCC-CCe-EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccC
Confidence            467888889888777777889999876 443 3232  234568899999999988887778889999887 443321 2


Q ss_pred             c---CCCeEEEEeeCCCEEEEEeCCCcEEEEEC
Q 045566           79 Q---LPDRCYALTVRYPLMVVGTADRNLVVFNL  108 (112)
Q Consensus        79 ~---~~~~~~~~~~~~~~~~~~~~d~~v~~~d~  108 (112)
                      .   .....+++++++...++...++.|..+|.
T Consensus       142 ~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~  174 (300)
T 2qc5_A          142 PNKGSYPAFITLGSDNALWFTENQNNSIGRITN  174 (300)
T ss_dssp             SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred             CCCCCCceeEEECCCCCEEEEecCCCeEEEECC
Confidence            2   12356777888886665555778888876

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.69  E-value=4.7e-10  Score=66.42  Aligned_cols=105  Identities=8%  Similarity=0.053  Sum_probs=50.2

Q ss_pred             cCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccC-CeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCCeEE
Q 045566            7 KDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDA-PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCY   85 (112)
Q Consensus         7 ~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~   85 (112)
                      ..++..+++++.|+.+..||..+++.......+.. .+.+.-....+..+++++.++.+..||.++++.+..+.... ..
T Consensus        46 ~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-~~  124 (369)
T 2hz6_A           46 HVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-AD  124 (369)
T ss_dssp             ----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC---------------
T ss_pred             EcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-cc
Confidence            34566777788999999999988887665542211 11000000124456777888999999999988776654432 23


Q ss_pred             EEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           86 ALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        86 ~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      .+.|++..+++++.++.++.||.++++
T Consensus       125 ~~~p~~~~v~~~~~dg~v~a~d~~tG~  151 (369)
T 2hz6_A          125 SLSPSTSLLYLGRTEYTITMYDTKTRE  151 (369)
T ss_dssp             --------EEEEEEEEEEECCCSSSSS
T ss_pred             cccccCCEEEEEecCCEEEEEECCCCC
Confidence            445677889999999999999998874

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.65  E-value=5.2e-06  Score=47.70  Aligned_cols=111  Identities=7%  Similarity=0.014  Sum_probs=70.0

Q ss_pred             eeEEEcCCCCEEEEEcCC---------CcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEE-EEeeCCCcEEEeeCC-
Q 045566            2 LCSTWKDDGTTVFSGGCD---------KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLL-ATGSWDKTLKYWDTR-   70 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~---------~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~i~~w~~~-   70 (112)
                      ..++++|+|+++++....         ..-.+|.+........+.........++|+|+++.+ ++...++.|..|++. 
T Consensus       101 ~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~  180 (297)
T 3g4e_A          101 NDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDL  180 (297)
T ss_dssp             EEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECT
T ss_pred             CCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccC
Confidence            467899999976654321         234555544333333333344456889999999865 455567889999873 


Q ss_pred             -CCCce-----EEec---CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           71 -QPNPV-----HTQQ---LPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        71 -~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                       ++...     ..+.   .....+++++++++.++...++.|..||..+++
T Consensus       181 ~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~  231 (297)
T 3g4e_A          181 QTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGK  231 (297)
T ss_dssp             TTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCC
T ss_pred             CCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCce
Confidence             33321     1111   123567888899877777677789999987653

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.63  E-value=1.3e-06  Score=51.23  Aligned_cols=109  Identities=15%  Similarity=0.093  Sum_probs=70.9

Q ss_pred             eeEEEcCCCCEEEEEcC--CCcEEEEEcCCCCCcEEEe-------eccCCeeEEEEccCCCEEEEeeC-----CCcEEEe
Q 045566            2 LCSTWKDDGTTVFSGGC--DKQVKMWPLLSGGQPVTVA-------MHDAPIKEVAWIPEMNLLATGSW-----DKTLKYW   67 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~--~~~v~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~-----~~~i~~w   67 (112)
                      ..++++++|+.+++...  ++.+++|.+.+++ +..++       .+...+..++++++++++++-..     +..|..|
T Consensus        20 ~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~   98 (343)
T 2qe8_A           20 GNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAW   98 (343)
T ss_dssp             EEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEE
T ss_pred             ceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEE
Confidence            46889999999888642  3424455443332 22221       23457899999999887765543     5789999


Q ss_pred             eCCCCCceEEecCC---------CeEEEEeeCCCEEEEE-e---CCCcEEEEECcCC
Q 045566           68 DTRQPNPVHTQQLP---------DRCYALTVRYPLMVVG-T---ADRNLVVFNLQNP  111 (112)
Q Consensus        68 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~-~---~d~~v~~~d~~~~  111 (112)
                      |+.+++.+..+..+         ...+++++++..++.+ .   .++.|.+||+.++
T Consensus        99 d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g  155 (343)
T 2qe8_A           99 DTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTG  155 (343)
T ss_dssp             ETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTC
T ss_pred             ECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCC
Confidence            99887755554321         2567888765555444 4   5778999998765

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.58  E-value=6.3e-06  Score=47.48  Aligned_cols=107  Identities=7%  Similarity=-0.040  Sum_probs=71.1

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeec-----cCCeeEEEEccCCCEEEE----eeC------------
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMH-----DAPIKEVAWIPEMNLLAT----GSW------------   60 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~----~~~------------   60 (112)
                      ..++++++|+++++...++.|..|+.. ++ ...+...     ...+..+.++++|..+++    |..            
T Consensus        89 ~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~-~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~  166 (305)
T 3dr2_A           89 NGNAVDAQQRLVHCEHGRRAITRSDAD-GQ-AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPEL  166 (305)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTT-SC-EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSS
T ss_pred             ceeeECCCCCEEEEECCCCEEEEECCC-CC-EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCcccccccccccccc
Confidence            468899999977766666789999864 43 2222211     134568999999998886    332            


Q ss_pred             -CCcEEEeeCCCCCceEEe-cCCCeEEEEeeCCCEEEEEeCC------CcEEEEECcC
Q 045566           61 -DKTLKYWDTRQPNPVHTQ-QLPDRCYALTVRYPLMVVGTAD------RNLVVFNLQN  110 (112)
Q Consensus        61 -~~~i~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d------~~v~~~d~~~  110 (112)
                       .+.|..+|..+++..... ......++|+|+++.++.+...      +.|..||+..
T Consensus       167 ~~~~v~~~d~~~g~~~~~~~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~  224 (305)
T 3dr2_A          167 AHHSVYRLPPDGSPLQRMADLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRD  224 (305)
T ss_dssp             SCEEEEEECSSSCCCEEEEEESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEET
T ss_pred             CCCeEEEEcCCCCcEEEEecCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecC
Confidence             245777777555433221 1223568899999988777665      6799998753

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.56  E-value=7.8e-06  Score=47.10  Aligned_cols=91  Identities=11%  Similarity=0.030  Sum_probs=64.2

Q ss_pred             eEEEcCCCC-EEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe---
Q 045566            3 CSTWKDDGT-TVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ---   78 (112)
Q Consensus         3 ~~~~~~~~~-~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~---   78 (112)
                      ...|+|+++ .+++...++.|..|+. +++ ...+......+..+.++++++++++...++.|..|+.. ++.....   
T Consensus        49 gp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~  125 (305)
T 3dr2_A           49 GPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRY  125 (305)
T ss_dssp             EEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEE
T ss_pred             CCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEecc
Confidence            568999988 6677778899999986 343 34455556678999999999977766666789999875 3322111   


Q ss_pred             c----CCCeEEEEeeCCCEEEE
Q 045566           79 Q----LPDRCYALTVRYPLMVV   96 (112)
Q Consensus        79 ~----~~~~~~~~~~~~~~~~~   96 (112)
                      .    .....+.+++++.+.++
T Consensus       126 ~~~~~~~~~~i~~d~dG~l~~t  147 (305)
T 3dr2_A          126 AGKRLNSPNDLIVARDGAIWFT  147 (305)
T ss_dssp             TTEECSCCCCEEECTTSCEEEE
T ss_pred             CCCccCCCCCEEECCCCCEEEe
Confidence            1    12345788899987775

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.55  E-value=8.1e-06  Score=47.86  Aligned_cols=106  Identities=8%  Similarity=0.012  Sum_probs=70.7

Q ss_pred             eeEEEcCCCCEEEEEcC-----CCcEEEEEcCCCCCcEEEeec------cCCeeEEEEccC-CCEEEEee---CCCcEEE
Q 045566            2 LCSTWKDDGTTVFSGGC-----DKQVKMWPLLSGGQPVTVAMH------DAPIKEVAWIPE-MNLLATGS---WDKTLKY   66 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~-----~~~v~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~-~~~~~~~~---~~~~i~~   66 (112)
                      ..++++++++++++-..     +..|.+||+.+++....+...      ......++++++ +..+++-.   .++.|.+
T Consensus        70 ~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v  149 (343)
T 2qe8_A           70 LGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIR  149 (343)
T ss_dssp             EEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEE
T ss_pred             eEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEE
Confidence            57889999887665543     578999998877755554321      234688999985 44555554   6788999


Q ss_pred             eeCCCCCceEEecC--------------------------------CCeEEEEeeCCCEEEEEeCCC-cEEEEE
Q 045566           67 WDTRQPNPVHTQQL--------------------------------PDRCYALTVRYPLMVVGTADR-NLVVFN  107 (112)
Q Consensus        67 w~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~d~-~v~~~d  107 (112)
                      ||+.+++.......                                ....++++++++.++.+..++ .+..++
T Consensus       150 ~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~  223 (343)
T 2qe8_A          150 VDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK  223 (343)
T ss_dssp             EETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred             EECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence            99876654332211                                124578889998888887665 444443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.51  E-value=3.9e-07  Score=54.19  Aligned_cols=104  Identities=6%  Similarity=-0.002  Sum_probs=70.5

Q ss_pred             eEEEcCCCCEEEEEc----------CCCcEEEEEcCCCCCcEEEeec-------cCCeeEEEEccCCCEEEEeeC--CCc
Q 045566            3 CSTWKDDGTTVFSGG----------CDKQVKMWPLLSGGQPVTVAMH-------DAPIKEVAWIPEMNLLATGSW--DKT   63 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~----------~~~~v~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~--~~~   63 (112)
                      .+.++|++++++++.          .++.|.++|+.+.+...++...       ......+.++|++++++.+..  +..
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~  148 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence            478999999998886          3678999999999998887643       123467899999998888764  466


Q ss_pred             EEE--eeCCCCCceEEecCCCeEEEEeeCCC-EEEEEeCCCcEEEEECcC
Q 045566           64 LKY--WDTRQPNPVHTQQLPDRCYALTVRYP-LMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        64 i~~--w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~~~d~~~  110 (112)
                      +.+  +|..+   +..+..+.. ..+.|++. .+++.+.|+.+.+.|+.+
T Consensus       149 v~V~~iD~~t---v~~i~v~~~-~~~~p~g~~~~~~~~~dg~~~~vd~~~  194 (368)
T 1mda_H          149 AGLSVPGASD---DQLTKSASC-FHIHPGAAATHYLGSCPASLAASDLAA  194 (368)
T ss_dssp             EEEEETTTEE---EEEEECSSC-CCCEEEETTEEECCCCTTSCEEEECCS
T ss_pred             EEEEEEchhh---ceEEECCCc-eEEccCCCeEEEEEcCCCCEEEEECcc
Confidence            888  99876   333332211 22334432 344455677766666654

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.49  E-value=3e-06  Score=54.07  Aligned_cols=102  Identities=16%  Similarity=0.147  Sum_probs=73.4

Q ss_pred             CEEEEEcCCCcEEEEEcCCCCCcEEEeeccC-----------Ce------------------------eEEEEccCCCEE
Q 045566           11 TTVFSGGCDKQVKMWPLLSGGQPVTVAMHDA-----------PI------------------------KEVAWIPEMNLL   55 (112)
Q Consensus        11 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~-----------~v------------------------~~~~~~~~~~~~   55 (112)
                      ..++.++.+|.+.++|..+++.+........           ++                        ..++++|+...+
T Consensus       328 ~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~  407 (677)
T 1kb0_A          328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV  407 (677)
T ss_dssp             EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred             eEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEE
Confidence            5688889999999999999888765432110           00                        146778876666


Q ss_pred             EEeeC-------------------------------------------CCcEEEeeCCCCCceEEecCC--CeEEEEeeC
Q 045566           56 ATGSW-------------------------------------------DKTLKYWDTRQPNPVHTQQLP--DRCYALTVR   90 (112)
Q Consensus        56 ~~~~~-------------------------------------------~~~i~~w~~~~~~~~~~~~~~--~~~~~~~~~   90 (112)
                      +....                                           .+.|..||+.+++.+..+...  .....+...
T Consensus       408 yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~  487 (677)
T 1kb0_A          408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTA  487 (677)
T ss_dssp             EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEET
T ss_pred             EEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeC
Confidence            55432                                           167999999999877666433  334456667


Q ss_pred             CCEEEEEeCCCcEEEEECcCCC
Q 045566           91 YPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        91 ~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      +..++.++.|+.+++||.++++
T Consensus       488 g~~v~~g~~dg~l~a~D~~tG~  509 (677)
T 1kb0_A          488 GNVVFQGTADGRLVAYHAATGE  509 (677)
T ss_dssp             TTEEEEECTTSEEEEEETTTCC
T ss_pred             CCEEEEECCCCcEEEEECCCCc
Confidence            8889999999999999999875

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.43  E-value=2e-05  Score=45.02  Aligned_cols=105  Identities=11%  Similarity=0.018  Sum_probs=76.0

Q ss_pred             EEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeecc-----CCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566            5 TWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHD-----APIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         5 ~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      .++++++.++++..++.+.+.|..+.+....+....     .....+.|. ++..++....++.|.+.|..+++.+..+.
T Consensus       111 glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~  189 (266)
T 2iwa_A          111 GLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWIL  189 (266)
T ss_dssp             EEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEE
T ss_pred             EEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEE
Confidence            355677777777778899999998888777665221     135677777 67666666678899999999999877765


Q ss_pred             CC----------------CeEEEEeeCCCEEEE-EeCCCcEEEEECcC
Q 045566           80 LP----------------DRCYALTVRYPLMVV-GTADRNLVVFNLQN  110 (112)
Q Consensus        80 ~~----------------~~~~~~~~~~~~~~~-~~~d~~v~~~d~~~  110 (112)
                      ..                ...+++++++..+++ +.....+...++.+
T Consensus       190 ~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          190 LPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             CHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             CCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            42                157899998875555 44677788777654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.43  E-value=4e-05  Score=44.65  Aligned_cols=98  Identities=16%  Similarity=0.148  Sum_probs=65.6

Q ss_pred             eeEEEcCCCCEEEEE-cCCCcEEEEEcC--CC-CC--cEEEe---eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCC
Q 045566            2 LCSTWKDDGTTVFSG-GCDKQVKMWPLL--SG-GQ--PVTVA---MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP   72 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~-~~~~~v~~~~~~--~~-~~--~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~   72 (112)
                      ..++|+|+++.++.+ ..++.|.+|+..  ++ ..  ...+.   ........+.+.+++.++++...++.|..|+. ++
T Consensus       182 ~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g  260 (326)
T 2ghs_A          182 NSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DG  260 (326)
T ss_dssp             EEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TC
T ss_pred             CCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CC
Confidence            467899999876544 567889999975  44 21  12221   12345678899999988877767788999998 45


Q ss_pred             CceEEecCC---CeEEEEe-eCCCEEEEEeCC
Q 045566           73 NPVHTQQLP---DRCYALT-VRYPLMVVGTAD  100 (112)
Q Consensus        73 ~~~~~~~~~---~~~~~~~-~~~~~~~~~~~d  100 (112)
                      +.+..+..+   ...++|. +++..+++++..
T Consensus       261 ~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          261 NHIARYEVPGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             CEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             CEEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence            555555433   3577887 777777665543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.41  E-value=7.4e-05  Score=47.82  Aligned_cols=109  Identities=19%  Similarity=0.166  Sum_probs=67.9

Q ss_pred             eeEEEcCCCCEEEEEcCCC-------------cEEEEEcCCCCCcE--EEe--e-ccCCeeEEEEccCCCEEEEee----
Q 045566            2 LCSTWKDDGTTVFSGGCDK-------------QVKMWPLLSGGQPV--TVA--M-HDAPIKEVAWIPEMNLLATGS----   59 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~-------------~v~~~~~~~~~~~~--~~~--~-~~~~v~~~~~~~~~~~~~~~~----   59 (112)
                      ..++|+ |++.|+.++.+.             .|.+|++.+.....  .+.  . +......+.++|++++++...    
T Consensus       178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~  256 (693)
T 3iuj_A          178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST  256 (693)
T ss_dssp             CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred             ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence            357899 999888887663             48899987655322  222  2 233467899999999775432    


Q ss_pred             CCCcEEEeeCCCCC-ceEEecC--CCeEEEEeeCCCEEEEEe-CC---CcEEEEECcCC
Q 045566           60 WDKTLKYWDTRQPN-PVHTQQL--PDRCYALTVRYPLMVVGT-AD---RNLVVFNLQNP  111 (112)
Q Consensus        60 ~~~~i~~w~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~-~d---~~v~~~d~~~~  111 (112)
                      ....++++|+.++. ....+..  ......+.+++..++..+ .+   +.|..+|+.++
T Consensus       257 ~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~  315 (693)
T 3iuj_A          257 SGNRLYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANP  315 (693)
T ss_dssp             SCCEEEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSC
T ss_pred             CCcEEEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence            23579999987653 2223222  222223666666555443 33   56888888765

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.41  E-value=4.7e-05  Score=44.38  Aligned_cols=104  Identities=4%  Similarity=-0.127  Sum_probs=64.5

Q ss_pred             eeEEEcCCCCEEEEEcC------CCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEE-EeeCCCcEEEeeCC--CC
Q 045566            2 LCSTWKDDGTTVFSGGC------DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA-TGSWDKTLKYWDTR--QP   72 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~i~~w~~~--~~   72 (112)
                      ..++++|+|+++++...      .+.|..++  ++ ....+.........++|+|+++.++ +...++.|.+|++.  ++
T Consensus       137 ~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g-~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~G  213 (326)
T 2ghs_A          137 NDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KG-KVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTG  213 (326)
T ss_dssp             EEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TT-EEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTC
T ss_pred             CCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CC-cEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccC
Confidence            46789999987665432      23455555  33 2333333334567899999998664 44557889999985  44


Q ss_pred             -Cc-----eEEec---CCCeEEEEeeCCCEEEEEeCCCcEEEEEC
Q 045566           73 -NP-----VHTQQ---LPDRCYALTVRYPLMVVGTADRNLVVFNL  108 (112)
Q Consensus        73 -~~-----~~~~~---~~~~~~~~~~~~~~~~~~~~d~~v~~~d~  108 (112)
                       ..     ...+.   .....+++++++.+.++...++.|..||.
T Consensus       214 l~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~  258 (326)
T 2ghs_A          214 LPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT  258 (326)
T ss_dssp             CBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred             CcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence             21     11121   11245677788876666666778999886

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.39  E-value=3.6e-05  Score=47.07  Aligned_cols=106  Identities=7%  Similarity=0.075  Sum_probs=71.3

Q ss_pred             EEEcCCCCEEEEEc-------------------CCCcEEEEEcCCCCCcEEEeec--cCCeeEEEE--ccCCCEEEEee-
Q 045566            4 STWKDDGTTVFSGG-------------------CDKQVKMWPLLSGGQPVTVAMH--DAPIKEVAW--IPEMNLLATGS-   59 (112)
Q Consensus         4 ~~~~~~~~~l~~~~-------------------~~~~v~~~~~~~~~~~~~~~~~--~~~v~~~~~--~~~~~~~~~~~-   59 (112)
                      +-|+|+++.+++..                   ...+|.+||+.+++...++...  ......+.|  +|++++...++ 
T Consensus       193 ~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e  272 (462)
T 2ece_A          193 FWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMV  272 (462)
T ss_dssp             EEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEE
T ss_pred             EEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEe
Confidence            56799999888874                   3678999999887666666532  123445555  99998776665 


Q ss_pred             -----CCCcEEEeeCCCCC--ceEE-----------e----------cCCCeEEEEeeCCCEEEEEeC-CCcEEEEECc
Q 045566           60 -----WDKTLKYWDTRQPN--PVHT-----------Q----------QLPDRCYALTVRYPLMVVGTA-DRNLVVFNLQ  109 (112)
Q Consensus        60 -----~~~~i~~w~~~~~~--~~~~-----------~----------~~~~~~~~~~~~~~~~~~~~~-d~~v~~~d~~  109 (112)
                           .++.|.+|....+.  ....           +          ......+.+++++++|+++.. .+.|.+||+.
T Consensus       273 ~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          273 VSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             EETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred             eeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence                 56677765543321  0000           0          122456889999999988776 6789999985

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.36  E-value=1.4e-05  Score=51.16  Aligned_cols=51  Identities=16%  Similarity=0.214  Sum_probs=40.1

Q ss_pred             CcEEEeeCCCCCceEEecCC--CeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           62 KTLKYWDTRQPNPVHTQQLP--DRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        62 ~~i~~w~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      +.+..||+.+++.+..+...  .....+...+..++.++.|+.++.||.++++
T Consensus       455 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~  507 (689)
T 1yiq_A          455 GKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGE  507 (689)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             eeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCc
Confidence            67999999999877665433  2333556678899999999999999999885

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.35  E-value=6.7e-06  Score=53.04  Aligned_cols=107  Identities=10%  Similarity=0.049  Sum_probs=68.0

Q ss_pred             eeEEEc-CCCCEEEEEcC-C----CcEEEEEcCCC-CCcE-EEeeccCCeeEEEEccCCCEEEEeeCC-----CcEEEee
Q 045566            2 LCSTWK-DDGTTVFSGGC-D----KQVKMWPLLSG-GQPV-TVAMHDAPIKEVAWIPEMNLLATGSWD-----KTLKYWD   68 (112)
Q Consensus         2 ~~~~~~-~~~~~l~~~~~-~----~~v~~~~~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~i~~w~   68 (112)
                      ...+|| |+|++++.... +    ..|+++|+.++ +.+. .+..   ....+.|+|+++.++....+     ..|..++
T Consensus       177 ~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~  253 (751)
T 2xe4_A          177 MEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWRHV  253 (751)
T ss_dssp             EEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred             eeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence            357899 99998875532 2    35999999887 5321 1221   23568899999877665544     2577788


Q ss_pred             CCCCCc--eEEecC--C--CeEEEEeeCCCEEEEEeC---CCcEEEEECcCC
Q 045566           69 TRQPNP--VHTQQL--P--DRCYALTVRYPLMVVGTA---DRNLVVFNLQNP  111 (112)
Q Consensus        69 ~~~~~~--~~~~~~--~--~~~~~~~~~~~~~~~~~~---d~~v~~~d~~~~  111 (112)
                      +.+.+.  ...+..  .  .....+++++++|+....   ...|.++|+.++
T Consensus       254 lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          254 MGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             TTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             CCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            876542  222221  1  245678999998776553   345788888754

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.30  E-value=2.8e-05  Score=48.94  Aligned_cols=89  Identities=15%  Similarity=0.089  Sum_probs=58.8

Q ss_pred             cEEEEEcCC--CCC-cEEEeeccCCeeEEEEccCCCEEEEee-CCCcEEEeeCCCCC------------ceEEecC--CC
Q 045566           21 QVKMWPLLS--GGQ-PVTVAMHDAPIKEVAWIPEMNLLATGS-WDKTLKYWDTRQPN------------PVHTQQL--PD   82 (112)
Q Consensus        21 ~v~~~~~~~--~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~i~~w~~~~~~------------~~~~~~~--~~   82 (112)
                      .|.+.|..+  ++. +..++.. ....++.++|||++++..+ .+..+.++|+.+.+            .......  .-
T Consensus       255 ~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP  333 (595)
T 1fwx_A          255 GVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGP  333 (595)
T ss_dssp             TEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCE
T ss_pred             cEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCc
Confidence            467777766  444 3445432 3457899999999776554 68899999998542            1222221  23


Q ss_pred             eEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           83 RCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        83 ~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      ..++|+++|....+.-.|+.|..||+.+
T Consensus       334 ~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          334 LHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             ceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence            5788999994334455589999999764

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.28  E-value=2.5e-05  Score=49.95  Aligned_cols=76  Identities=12%  Similarity=0.073  Sum_probs=56.1

Q ss_pred             CcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCC----eEEEEeeCCCEEE
Q 045566           20 KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD----RCYALTVRYPLMV   95 (112)
Q Consensus        20 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~----~~~~~~~~~~~~~   95 (112)
                      +.|..||+.+++....++. ..+.....+...+..++.++.++.+++||.++++.+..+..+.    ..+.+..+++.++
T Consensus       457 g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v  535 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV  535 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cEEEEEeCCCCcEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEE
Confidence            6789999998888776653 3333444455667788888999999999999999998886543    4566777886554


Q ss_pred             E
Q 045566           96 V   96 (112)
Q Consensus        96 ~   96 (112)
                      .
T Consensus       536 ~  536 (677)
T 1kb0_A          536 S  536 (677)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.25  E-value=4e-05  Score=46.88  Aligned_cols=104  Identities=11%  Similarity=0.138  Sum_probs=73.0

Q ss_pred             EEEcCCCCEEEEEcCC------CcEEEEEcCCCCCcEEEeeccCC---eeEEEEccCCCEEEEee---------------
Q 045566            4 STWKDDGTTVFSGGCD------KQVKMWPLLSGGQPVTVAMHDAP---IKEVAWIPEMNLLATGS---------------   59 (112)
Q Consensus         4 ~~~~~~~~~l~~~~~~------~~v~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~~~~---------------   59 (112)
                      +...|+| .++++..+      +.+.+.|..+.+.+.+......+   -..+.|+|+++.+++..               
T Consensus       143 ~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~  221 (462)
T 2ece_A          143 VHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEH  221 (462)
T ss_dssp             EEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTT
T ss_pred             eeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhh
Confidence            4567888 66665554      78999999888887776522111   23577899999988885               


Q ss_pred             ----CCCcEEEeeCCCCCceEEecCCC-----eEE--EEeeCCCEEEEEeC------CCcEEEEEC
Q 045566           60 ----WDKTLKYWDTRQPNPVHTQQLPD-----RCY--ALTVRYPLMVVGTA------DRNLVVFNL  108 (112)
Q Consensus        60 ----~~~~i~~w~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~------d~~v~~~d~  108 (112)
                          ....|.+||+.+.+.+..+....     ..+  .++|+++++++++.      +++|.+|..
T Consensus       222 ~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~  287 (462)
T 2ece_A          222 LKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFY  287 (462)
T ss_dssp             HHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEE
T ss_pred             hhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEe
Confidence                36889999999877676665531     223  34899998888774      557766543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.24  E-value=0.00011  Score=43.37  Aligned_cols=101  Identities=13%  Similarity=0.075  Sum_probs=69.2

Q ss_pred             CCCEEEEEcCCCcEEEEEcCCCCCcEEEeec---------cCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566            9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMH---------DAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         9 ~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      .+..+++++.++.|..+|..+++........         ...+... ...++..++.++.++.+..+|..+++.+....
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~  130 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK  130 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence            4567788888899999999888877655432         1222221 12235567778889999999999998876664


Q ss_pred             CCCe---EEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           80 LPDR---CYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        80 ~~~~---~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      ....   ....  .+..+++++.++.+..+|.++++
T Consensus       131 ~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~  164 (376)
T 3q7m_A          131 VAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGA  164 (376)
T ss_dssp             CSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred             CCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCc
Confidence            4321   1111  24578888889999999988774

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.21  E-value=2.3e-05  Score=50.21  Aligned_cols=76  Identities=13%  Similarity=0.068  Sum_probs=56.2

Q ss_pred             CcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCC----CeEEEEeeCCCEEE
Q 045566           20 KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP----DRCYALTVRYPLMV   95 (112)
Q Consensus        20 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~----~~~~~~~~~~~~~~   95 (112)
                      +.+..||+.+++....++.+. +...-.+...+.+++.++.|+.++.||.++++.+..+..+    ...+.+..+|++++
T Consensus       455 g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv  533 (689)
T 1yiq_A          455 GKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYV  533 (689)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             eeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEE
Confidence            679999999998877766443 2233345556778888999999999999999999887654    34567777887544


Q ss_pred             E
Q 045566           96 V   96 (112)
Q Consensus        96 ~   96 (112)
                      +
T Consensus       534 ~  534 (689)
T 1yiq_A          534 T  534 (689)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.19  E-value=6.5e-05  Score=44.37  Aligned_cols=102  Identities=16%  Similarity=0.125  Sum_probs=67.2

Q ss_pred             CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCCeEE---
Q 045566            9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCY---   85 (112)
Q Consensus         9 ~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~---   85 (112)
                      ++..+++++.++.|..+|..+++.................  .+..++.++.++.+..+|..+++.+..........   
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~  179 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR  179 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence            3456777888899999999888877655433221111111  23467777889999999999998876665432111   


Q ss_pred             ---EEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           86 ---ALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        86 ---~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                         .....+..++++..++.+..+|.++++
T Consensus       180 ~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~  209 (376)
T 3q7m_A          180 GESAPTTAFGAAVVGGDNGRVSAVLMEQGQ  209 (376)
T ss_dssp             CCCCCEEETTEEEECCTTTEEEEEETTTCC
T ss_pred             CCCCcEEECCEEEEEcCCCEEEEEECCCCc
Confidence               111124567888888999999988764

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.09  E-value=3.4e-05  Score=48.60  Aligned_cols=98  Identities=10%  Similarity=0.000  Sum_probs=66.4

Q ss_pred             eeEEEcCCCCEEEEEc-CCCcEEEEEcCCCCC-----------cEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeC
Q 045566            2 LCSTWKDDGTTVFSGG-CDKQVKMWPLLSGGQ-----------PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT   69 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~-~~~~v~~~~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~   69 (112)
                      .++.++|||+++++++ .+.+|.++|+.+.+.           +.....-......++|+++|....+...+..|..|++
T Consensus       280 hGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi  359 (595)
T 1fwx_A          280 HGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNI  359 (595)
T ss_dssp             CCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred             eEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEh
Confidence            4689999999876654 678999999985421           1111122345678999999955566677999999998


Q ss_pred             CC----------CCceEEecCCCe--------EEEEeeCCCEEEEEeC
Q 045566           70 RQ----------PNPVHTQQLPDR--------CYALTVRYPLMVVGTA   99 (112)
Q Consensus        70 ~~----------~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~   99 (112)
                      .+          .+.+..+..+..        ...++++|++|++...
T Consensus       360 ~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          360 EDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             HHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             hHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence            76          445555544322        1234678999888755

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.05  E-value=0.0002  Score=45.02  Aligned_cols=52  Identities=13%  Similarity=0.041  Sum_probs=37.9

Q ss_pred             CCcEEEeeCCCCCceEEecCC--CeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           61 DKTLKYWDTRQPNPVHTQQLP--DRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        61 ~~~i~~w~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      ++.+..+|..+++.+..+...  .....+...+..++.++.|+.++.+|.++++
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~  496 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGK  496 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             CCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCC
Confidence            477999999998887665432  2222233356778889999999999998875

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.98  E-value=0.00036  Score=44.50  Aligned_cols=109  Identities=12%  Similarity=0.140  Sum_probs=68.2

Q ss_pred             eEEEcC-CCCEEEEEcCCC-----------cEEEEEcCCCCC--cEEEee-ccCCeeEEEEccCCCEEEEeeC-CCcEEE
Q 045566            3 CSTWKD-DGTTVFSGGCDK-----------QVKMWPLLSGGQ--PVTVAM-HDAPIKEVAWIPEMNLLATGSW-DKTLKY   66 (112)
Q Consensus         3 ~~~~~~-~~~~l~~~~~~~-----------~v~~~~~~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~~~~~~-~~~i~~   66 (112)
                      ..++.+ +++.++.|+.+.           .+.+||..+++-  +..... +......+++..++..++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            355666 788888876432           578899876653  222322 2222335677788999988884 557999


Q ss_pred             eeCCCCCceEEecCC----CeEEEEeeCCCEEEEEe-CC-----CcEEEEECcCC
Q 045566           67 WDTRQPNPVHTQQLP----DRCYALTVRYPLMVVGT-AD-----RNLVVFNLQNP  111 (112)
Q Consensus        67 w~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~d-----~~v~~~d~~~~  111 (112)
                      ||..+.+.......+    ....+..++++.++.|+ .+     ..+.+||..+.
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~  324 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  324 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence            998776433222111    12344455888888887 34     46889998764

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.96  E-value=0.00051  Score=39.28  Aligned_cols=100  Identities=8%  Similarity=-0.042  Sum_probs=65.9

Q ss_pred             CCCEE-EEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCC-----
Q 045566            9 DGTTV-FSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD-----   82 (112)
Q Consensus         9 ~~~~l-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~-----   82 (112)
                      .+..| ...-.++.+.++|..+.+.+.+++..... ..+  .+++..++.+..++.+.++|..+.+.+..+....     
T Consensus       104 ~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eG-wGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v  180 (268)
T 3nok_A          104 DGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEG-WGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPV  180 (268)
T ss_dssp             CSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCC-CCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEEC
T ss_pred             eCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCce-eEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccc
Confidence            34444 44456789999999998888887743322 233  3567777777778999999999988777664421     


Q ss_pred             ---eEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           83 ---RCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        83 ---~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                         +.+.+. ++...+..-.+..|.+.|.++++
T Consensus       181 ~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~  212 (268)
T 3nok_A          181 ELINELECA-NGVIYANIWHSSDVLEIDPATGT  212 (268)
T ss_dssp             CCEEEEEEE-TTEEEEEETTCSEEEEECTTTCB
T ss_pred             ccccccEEe-CCEEEEEECCCCeEEEEeCCCCc
Confidence               223333 56544444357788888888764

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.96  E-value=0.00078  Score=41.14  Aligned_cols=102  Identities=10%  Similarity=0.052  Sum_probs=70.1

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCC----------cE--EEee------ccCCeeEEEEcc---CCCEEEEeeC
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ----------PV--TVAM------HDAPIKEVAWIP---EMNLLATGSW   60 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~----------~~--~~~~------~~~~v~~~~~~~---~~~~~~~~~~   60 (112)
                      ..+..+|+|++||..+. ..|.+-.++.+..          +.  .+.-      ...+|..+.|+|   .+..+++-..
T Consensus        69 ~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLts  147 (452)
T 3pbp_A           69 FHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKE  147 (452)
T ss_dssp             CEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEET
T ss_pred             eEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEec
Confidence            45788999999998876 5788888773321          11  2221      246799999999   4668999999


Q ss_pred             CCcEEEeeCCCCC--ceEEec------------CCCeEEEEeeCCCEEEEEe--CCCcEEE
Q 045566           61 DKTLKYWDTRQPN--PVHTQQ------------LPDRCYALTVRYPLMVVGT--ADRNLVV  105 (112)
Q Consensus        61 ~~~i~~w~~~~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~--~d~~v~~  105 (112)
                      |+.|++||+....  +. .+.            ..+.+++|..++-.|+..+  .+|.|+-
T Consensus       148 D~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          148 DDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             TSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred             CCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence            9999999997522  22 221            2345778877776666655  6677754

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.96  E-value=0.00047  Score=39.30  Aligned_cols=93  Identities=10%  Similarity=0.059  Sum_probs=66.4

Q ss_pred             EcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeec--c---CCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            6 WKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMH--D---APIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         6 ~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~--~---~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      +++++..|+.+..+..+.++|..+.+....+...  .   ..++.+.+. +|..++..-.+..|.+.|.++++.+..+..
T Consensus       132 lt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~  210 (262)
T 3nol_A          132 LTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDL  210 (262)
T ss_dssp             EEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEEC
T ss_pred             EecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEEC
Confidence            3456777777776788999998888877666432  1   234456775 677777666788999999999987766543


Q ss_pred             C---------------CeEEEEeeCCCEEEEEeC
Q 045566           81 P---------------DRCYALTVRYPLMVVGTA   99 (112)
Q Consensus        81 ~---------------~~~~~~~~~~~~~~~~~~   99 (112)
                      .               -+.++++|++..|++.+.
T Consensus       211 ~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          211 NGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             TTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             CcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            1               157899998877777665

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.93  E-value=0.00064  Score=44.11  Aligned_cols=70  Identities=17%  Similarity=0.073  Sum_probs=45.9

Q ss_pred             eEEEcCCCCEEEEEcCC-----CcEEEEEcCCCCCc--EEEe-eccCCeeEEEEccCCCEEEEeeC---CCcEEEeeCCC
Q 045566            3 CSTWKDDGTTVFSGGCD-----KQVKMWPLLSGGQP--VTVA-MHDAPIKEVAWIPEMNLLATGSW---DKTLKYWDTRQ   71 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~~-----~~v~~~~~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~~~~~~~---~~~i~~w~~~~   71 (112)
                      .++|+|+++.|+....+     ..|..+++.++...  ..+. ........+.|+|++++++....   ...+.++|+.+
T Consensus       225 ~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~  304 (751)
T 2xe4_A          225 EIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK  304 (751)
T ss_dssp             CCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred             eEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence            57899999888776654     25777777665432  2222 22234567889999998775542   34577888876


Q ss_pred             C
Q 045566           72 P   72 (112)
Q Consensus        72 ~   72 (112)
                      +
T Consensus       305 ~  305 (751)
T 2xe4_A          305 G  305 (751)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.91  E-value=0.00064  Score=38.35  Aligned_cols=109  Identities=6%  Similarity=-0.057  Sum_probs=63.9

Q ss_pred             eeEEEcCCCCEEEEEcC---CCcEEEEEcCCCCCcEEEe-eccCCeeEEEEccCCCEE-EEeeCCCcEEEeeCCCCCceE
Q 045566            2 LCSTWKDDGTTVFSGGC---DKQVKMWPLLSGGQPVTVA-MHDAPIKEVAWIPEMNLL-ATGSWDKTLKYWDTRQPNPVH   76 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~---~~~v~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~-~~~~~~~~i~~w~~~~~~~~~   76 (112)
                      ..++++|++..++.+..   .+.|..+++.. .....+. ........+++++++..+ ++-...+.|..+++.......
T Consensus       125 ~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~  203 (267)
T 1npe_A          125 RGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRK  203 (267)
T ss_dssp             EEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEE
T ss_pred             cEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEE
Confidence            35788986555544443   46788887653 3323332 223456889999976544 555567889999987543222


Q ss_pred             EecCCCeEEEEeeCCCEEEEEeC-CCcEEEEECcCC
Q 045566           77 TQQLPDRCYALTVRYPLMVVGTA-DRNLVVFNLQNP  111 (112)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~-d~~v~~~d~~~~  111 (112)
                      ..........+..++..++.+.. ++.|..+|..++
T Consensus       204 ~~~~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g  239 (267)
T 1npe_A          204 VLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAIS  239 (267)
T ss_dssp             EEECCCSEEEEEEETTEEEEEETTTTEEEEEETTTT
T ss_pred             EecCCCCceEEEEeCCEEEEEECCCCeEEEEeCCCC
Confidence            22221222233344566666654 578988988765

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.89  E-value=0.00061  Score=39.26  Aligned_cols=98  Identities=13%  Similarity=0.053  Sum_probs=61.5

Q ss_pred             EEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCC--
Q 045566            4 STWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP--   81 (112)
Q Consensus         4 ~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~--   81 (112)
                      +...+++. +..++.++.+..+|.. ++....+......+.++...+++..++..   +.+..+| .+++.+......  
T Consensus       142 ~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~  215 (330)
T 3hxj_A          142 PIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYW  215 (330)
T ss_dssp             CEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSC
T ss_pred             eEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCc
Confidence            34444555 5557777889999977 66555555445556677777777765544   7788888 666655554432  


Q ss_pred             -CeEEEEeeCCCEEEEEeCCCcEEEEEC
Q 045566           82 -DRCYALTVRYPLMVVGTADRNLVVFNL  108 (112)
Q Consensus        82 -~~~~~~~~~~~~~~~~~~d~~v~~~d~  108 (112)
                       ...+...+++ .+..++.++.+..+|.
T Consensus       216 ~~~~~~~~~~g-~l~v~t~~~gl~~~~~  242 (330)
T 3hxj_A          216 TVTRPAISEDG-TIYVTSLDGHLYAINP  242 (330)
T ss_dssp             CCSCCEECTTS-CEEEEETTTEEEEECT
T ss_pred             ceeceEECCCC-eEEEEcCCCeEEEECC
Confidence             3344555554 4566666777777763

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.87  E-value=0.00099  Score=39.30  Aligned_cols=109  Identities=6%  Similarity=-0.062  Sum_probs=76.9

Q ss_pred             eeEEE---cCCCCEEEEEc-------------CCCcEEEEEcC---CCCCcEEEe--e-----------ccCCeeEEEEc
Q 045566            2 LCSTW---KDDGTTVFSGG-------------CDKQVKMWPLL---SGGQPVTVA--M-----------HDAPIKEVAWI   49 (112)
Q Consensus         2 ~~~~~---~~~~~~l~~~~-------------~~~~v~~~~~~---~~~~~~~~~--~-----------~~~~v~~~~~~   49 (112)
                      ..+.|   .|+++++++..             .+..|..||+.   +++......  .           .......++..
T Consensus        66 sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD  145 (334)
T 2p9w_A           66 SGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQD  145 (334)
T ss_dssp             EEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEEC
T ss_pred             eEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEEC
Confidence            35778   68877777543             25779999998   777665442  1           11247899999


Q ss_pred             cCCCEEEEeeCC-CcEEEeeCCCCCceEEe-cC-------CCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           50 PEMNLLATGSWD-KTLKYWDTRQPNPVHTQ-QL-------PDRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        50 ~~~~~~~~~~~~-~~i~~w~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      ++|+..++++.. +.|...+.......... ..       ..+.+.++|++..|++....+.+..+|+++
T Consensus       146 ~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          146 RDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             TTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             CCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            999999988888 88777776544222111 11       135789999999998887799999999764

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.86  E-value=0.0005  Score=43.44  Aligned_cols=52  Identities=17%  Similarity=0.137  Sum_probs=37.7

Q ss_pred             CCcEEEeeCCCCCceEEecCC--CeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           61 DKTLKYWDTRQPNPVHTQQLP--DRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        61 ~~~i~~w~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      ++.+..||+.+++.+......  ...-.+...+..++.++.|+.++.||.++++
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~  518 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGK  518 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCC
Confidence            577889999999877655432  2221223356788889999999999999885

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.83  E-value=0.00037  Score=44.67  Aligned_cols=52  Identities=17%  Similarity=0.237  Sum_probs=39.5

Q ss_pred             CCcEEEeeCCCCCceEEecCC--CeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           61 DKTLKYWDTRQPNPVHTQQLP--DRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        61 ~~~i~~w~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      ++.+..||+.+++.+......  .....+...+..++.++.|+.++.||.++++
T Consensus       437 ~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~  490 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGE  490 (668)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             cceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcCh
Confidence            377999999999877665432  2333455577889999999999999998875

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.82  E-value=0.0013  Score=41.87  Aligned_cols=52  Identities=12%  Similarity=-0.011  Sum_probs=37.8

Q ss_pred             CCcEEEeeCCCCCceEEecCC--CeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           61 DKTLKYWDTRQPNPVHTQQLP--DRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        61 ~~~i~~w~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      .+.+..||+.+++.+......  ...-.+.-.+..++.++.|+.++.||.++++
T Consensus       452 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~  505 (599)
T 1w6s_A          452 LGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGD  505 (599)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             cCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCC
Confidence            467888999999887666432  2221233456788889999999999999875

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.79  E-value=0.0017  Score=39.54  Aligned_cols=106  Identities=5%  Similarity=0.000  Sum_probs=65.4

Q ss_pred             eeEEEcCCCCEEEEEcC-CC----cEEEEEcCCCCCc--EEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCC
Q 045566            2 LCSTWKDDGTTVFSGGC-DK----QVKMWPLLSGGQP--VTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPN   73 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~-~~----~v~~~~~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~   73 (112)
                      ..++|+++++.|+++.. ++    .+...+. .+...  ..+. .......++++| ++.++++-..++.|..++.....
T Consensus       182 ~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~  259 (430)
T 3tc9_A          182 RTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQE  259 (430)
T ss_dssp             EEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTE
T ss_pred             ceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc
Confidence            36889999986655543 22    2333442 23222  2332 233457788999 77777777778889999987654


Q ss_pred             ceEEecC----CCeEEEEeeCCCEEEEE-eCCCcEEEEECc
Q 045566           74 PVHTQQL----PDRCYALTVRYPLMVVG-TADRNLVVFNLQ  109 (112)
Q Consensus        74 ~~~~~~~----~~~~~~~~~~~~~~~~~-~~d~~v~~~d~~  109 (112)
                      .......    ....+++++++++++.+ ..++.|..++..
T Consensus       260 ~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          260 TTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            3222211    24578999999965555 456778887654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.76  E-value=0.0013  Score=37.19  Aligned_cols=99  Identities=5%  Similarity=-0.066  Sum_probs=63.7

Q ss_pred             CCEE-EEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCC------
Q 045566           10 GTTV-FSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD------   82 (112)
Q Consensus        10 ~~~l-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~------   82 (112)
                      +..+ ...-.++.+.++|..+.+.+.+++....+ ..  +.+++..++.+..++.|.++|..+.+.+..+....      
T Consensus        74 ~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G-wg--lt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~  150 (243)
T 3mbr_X           74 RDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG-WA--LTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLD  150 (243)
T ss_dssp             TTEEEEEESSSSEEEEEETTTTEEEEEEECSSCC-CE--EEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECC
T ss_pred             CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc-eE--EeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccc
Confidence            3444 33456788999999988888887644333 23  33556666666678899999999988776664421      


Q ss_pred             --eEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           83 --RCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        83 --~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                        +.+.+. ++..++..-.+..|.+.|.++++
T Consensus       151 ~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~  181 (243)
T 3mbr_X          151 NLNELEWV-NGELLANVWLTSRIARIDPASGK  181 (243)
T ss_dssp             CEEEEEEE-TTEEEEEETTTTEEEEECTTTCB
T ss_pred             cceeeEEe-CCEEEEEECCCCeEEEEECCCCC
Confidence              122222 45444444356678888888764

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.71  E-value=0.0016  Score=37.06  Aligned_cols=106  Identities=8%  Similarity=0.087  Sum_probs=71.1

Q ss_pred             eeEEEcCCCCEE-EEEcCCCcEEEEEcCCCCCcEEEee-ccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCc---eE
Q 045566            2 LCSTWKDDGTTV-FSGGCDKQVKMWPLLSGGQPVTVAM-HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP---VH   76 (112)
Q Consensus         2 ~~~~~~~~~~~l-~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~---~~   76 (112)
                      ..++|+|++..| ++...++.|...|.. ++....++- .......+++.+++.++++.-.++.+.++++.....   +.
T Consensus        30 SGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~  108 (255)
T 3qqz_A           30 SSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILK  108 (255)
T ss_dssp             EEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEE
T ss_pred             ceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeee
Confidence            568999976655 456677888888876 666665532 224667888988887777766677888888765442   12


Q ss_pred             EecC---------CCeEEEEeeCCCEEEEEeCCCcEEEEEC
Q 045566           77 TQQL---------PDRCYALTVRYPLMVVGTADRNLVVFNL  108 (112)
Q Consensus        77 ~~~~---------~~~~~~~~~~~~~~~~~~~d~~v~~~d~  108 (112)
                      ....         ....+++++.+..++++.......+|.+
T Consensus       109 ~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~  149 (255)
T 3qqz_A          109 KIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKV  149 (255)
T ss_dssp             EEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEE
T ss_pred             eeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEE
Confidence            2211         1268999999887777776555555544

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.68  E-value=0.0017  Score=36.59  Aligned_cols=108  Identities=6%  Similarity=-0.059  Sum_probs=67.0

Q ss_pred             eeEEEcCCCCEE-EEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCC-CEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566            2 LCSTWKDDGTTV-FSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEM-NLLATGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         2 ~~~~~~~~~~~l-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      ..++|++++..| ++-..++.|..++...................+++++++ ..+++-...+.|.++++..........
T Consensus        39 ~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~  118 (267)
T 1npe_A           39 IGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD  118 (267)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred             EEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEE
Confidence            367889865554 455567889999986554332332222467899999864 455555567889999886543222222


Q ss_pred             ---CCCeEEEEeeCCCEEEEEeC---CCcEEEEECc
Q 045566           80 ---LPDRCYALTVRYPLMVVGTA---DRNLVVFNLQ  109 (112)
Q Consensus        80 ---~~~~~~~~~~~~~~~~~~~~---d~~v~~~d~~  109 (112)
                         .....+++++++..++.+..   .+.|..+++.
T Consensus       119 ~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d  154 (267)
T 1npe_A          119 TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD  154 (267)
T ss_dssp             SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT
T ss_pred             CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC
Confidence               12356788886666655554   3567777654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.65  E-value=0.003  Score=38.49  Aligned_cols=108  Identities=6%  Similarity=0.022  Sum_probs=63.1

Q ss_pred             eeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeC-CC----cEEEeeCCCCCc-
Q 045566            2 LCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW-DK----TLKYWDTRQPNP-   74 (112)
Q Consensus         2 ~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~----~i~~w~~~~~~~-   74 (112)
                      ..++++| ++..|+++...+.|+.+|+.... +..+.........+++++++..++.+.. ++    .+...+...... 
T Consensus       140 ~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~-v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~  218 (430)
T 3tc9_A          140 VWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY-VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKV  218 (430)
T ss_dssp             CEEEEETTEEEEEEEEEBTEEEEEEETTTTE-EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCS
T ss_pred             CEEEECCCCCCeEEEEeCCCcEEEEECCCCE-EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceee
Confidence            4678888 45556666555788888876543 3333334455788999999985554443 22    233334322111 


Q ss_pred             eEEe--cCCCeEEEEee-CCCEEEEEeCCCcEEEEECcC
Q 045566           75 VHTQ--QLPDRCYALTV-RYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        75 ~~~~--~~~~~~~~~~~-~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      ...+  ......++++| ++.++++-..++.|..+|...
T Consensus       219 ~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~  257 (430)
T 3tc9_A          219 ITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTT  257 (430)
T ss_dssp             EEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTT
T ss_pred             eeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCC
Confidence            1111  22345677888 566555555677888888754

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.56  E-value=0.0032  Score=36.35  Aligned_cols=107  Identities=11%  Similarity=0.060  Sum_probs=63.2

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCC--cEEEeeCCCCCceEEec
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDK--TLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~i~~w~~~~~~~~~~~~   79 (112)
                      ..++|+++++.+++-..++.|..+|... +..... ........+++.++++++++.....  .+..++..+++......
T Consensus        35 egia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~-~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~  112 (306)
T 2p4o_A           35 ENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHA-TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLT  112 (306)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEE-ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred             ceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEE-eCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEe
Confidence            3678999998777777788999998654 322222 2335678899999998766654332  46666766655432221


Q ss_pred             CCC----eEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           80 LPD----RCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        80 ~~~----~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      ...    ...+..+.+..+++-..++.|..+|...
T Consensus       113 ~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~  147 (306)
T 2p4o_A          113 LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQ  147 (306)
T ss_dssp             CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTT
T ss_pred             CCCccccCcccccCCCcEEEEECCCCeEEEEeCCC
Confidence            111    2223323333333333577888888653

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.54  E-value=0.0028  Score=36.48  Aligned_cols=95  Identities=9%  Similarity=0.025  Sum_probs=60.2

Q ss_pred             CCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCC---CeEEE
Q 045566           10 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP---DRCYA   86 (112)
Q Consensus        10 ~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~---~~~~~   86 (112)
                      +..+..++.++.+..+|.. ++...........+.++...+++.. ..++.++.+..+|.. ++.+......   ...+.
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l-~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~  183 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTI-YVGSNDNYLYAINPD-GTEKWRFKTNDAITSAAS  183 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCE-EEECTTSEEEEECTT-SCEEEEEECSSCCCSCCE
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEE-EEEcCCCEEEEECCC-CCEeEEEecCCCceeeeE
Confidence            4456778878889999977 6655555444445566666667764 456677889999988 6655444322   23444


Q ss_pred             EeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           87 LTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        87 ~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      ...++. ++.++  +.+..+| .++
T Consensus       184 ~d~~g~-l~v~t--~~l~~~d-~~g  204 (330)
T 3hxj_A          184 IGKDGT-IYFGS--DKVYAIN-PDG  204 (330)
T ss_dssp             ECTTCC-EEEES--SSEEEEC-TTS
T ss_pred             EcCCCE-EEEEe--CEEEEEC-CCC
Confidence            445555 44554  7788887 443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.48  E-value=0.0025  Score=40.23  Aligned_cols=77  Identities=13%  Similarity=0.076  Sum_probs=50.3

Q ss_pred             CCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCC----eEEEEeeCCCEE
Q 045566           19 DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD----RCYALTVRYPLM   94 (112)
Q Consensus        19 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~----~~~~~~~~~~~~   94 (112)
                      ++.+..+|..+++...++... ..+....+...+..++.++.++.++.+|.++++.+..+....    ..+.+..++..+
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~y  521 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQY  521 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEE
Confidence            467889998888877766532 222222222235566778899999999999999888776432    234455666644


Q ss_pred             EE
Q 045566           95 VV   96 (112)
Q Consensus        95 ~~   96 (112)
                      +.
T Consensus       522 v~  523 (571)
T 2ad6_A          522 IG  523 (571)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.48  E-value=0.0042  Score=36.01  Aligned_cols=106  Identities=9%  Similarity=0.018  Sum_probs=64.2

Q ss_pred             eEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCcEEEee-----ccCCeeEEEEcc-CCCEEEEeeC---------------
Q 045566            3 CSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQPVTVAM-----HDAPIKEVAWIP-EMNLLATGSW---------------   60 (112)
Q Consensus         3 ~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~~~~~~~---------------   60 (112)
                      .+++++ ++++ +++...+.+..+|..++.. ..+..     .......+++.+ ++..+++-..               
T Consensus        84 gi~~~~~~g~l-~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~  161 (322)
T 2fp8_A           84 DISYNLQNNQL-YIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTS  161 (322)
T ss_dssp             EEEEETTTTEE-EEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHT
T ss_pred             eEEEcCCCCcE-EEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehccc
Confidence            577887 5554 4443344577787654322 22211     123467899999 8987776432               


Q ss_pred             --CCcEEEeeCCCCCceEE--ecCCCeEEEEeeCCCEEEEE-eCCCcEEEEECcC
Q 045566           61 --DKTLKYWDTRQPNPVHT--QQLPDRCYALTVRYPLMVVG-TADRNLVVFNLQN  110 (112)
Q Consensus        61 --~~~i~~w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~d~~v~~~d~~~  110 (112)
                        ++.+..+|..+.+....  -......+++++++..++++ ..++.|..+++..
T Consensus       162 ~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~  216 (322)
T 2fp8_A          162 DKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG  216 (322)
T ss_dssp             CCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred             CCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence              35678888765543211  11234568899999876665 4567899998764

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.41  E-value=0.0095  Score=38.36  Aligned_cols=94  Identities=14%  Similarity=0.131  Sum_probs=64.2

Q ss_pred             CCcEEEEEcCCCCCcEEEeec---cC----------------------------CeeEEEEccCCCEEEEeeCCC-----
Q 045566           19 DKQVKMWPLLSGGQPVTVAMH---DA----------------------------PIKEVAWIPEMNLLATGSWDK-----   62 (112)
Q Consensus        19 ~~~v~~~~~~~~~~~~~~~~~---~~----------------------------~v~~~~~~~~~~~~~~~~~~~-----   62 (112)
                      ++.|..+|..+++.+..+...   ..                            ....+++.++...++.+..++     
T Consensus       177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~  256 (668)
T 1kv9_A          177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR  256 (668)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence            588999999999887766421   00                            112367777777777776655     


Q ss_pred             --------------cEEEeeCCCCCceEEecCC----------Ce--EEEEeeCCC---EEEEEeCCCcEEEEECcCCC
Q 045566           63 --------------TLKYWDTRQPNPVHTQQLP----------DR--CYALTVRYP---LMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        63 --------------~i~~w~~~~~~~~~~~~~~----------~~--~~~~~~~~~---~~~~~~~d~~v~~~d~~~~~  112 (112)
                                    .|..+|.++++.+..+...          ..  ...+..++.   .++.++.+|.++++|.++++
T Consensus       257 ~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~  335 (668)
T 1kv9_A          257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK  335 (668)
T ss_dssp             HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             CCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence                          3889999999988766432          11  112234554   68888999999999998875

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.38  E-value=0.006  Score=35.38  Aligned_cols=106  Identities=10%  Similarity=-0.045  Sum_probs=63.8

Q ss_pred             eeEEEcCCCCEEEEE-cCCCcEEEEEcCCCC--CcEEEeeccCCeeEEEEccCCCEEEEeeC----------CCcEEEee
Q 045566            2 LCSTWKDDGTTVFSG-GCDKQVKMWPLLSGG--QPVTVAMHDAPIKEVAWIPEMNLLATGSW----------DKTLKYWD   68 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~-~~~~~v~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----------~~~i~~w~   68 (112)
                      ..++++|+++.++.+ ..++.|..+++....  ....+..... ...+++.++|.++++...          .+.|..+|
T Consensus       188 ~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d  266 (322)
T 2fp8_A          188 GGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFD  266 (322)
T ss_dssp             CEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEEC
T ss_pred             cceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEEC
Confidence            357899999866555 566889999986432  1122222223 677899999987776644          35677777


Q ss_pred             CCCCCceEEecCC-------CeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           69 TRQPNPVHTQQLP-------DRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        69 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      .. ++.+..+..+       ...+.+ .++.++++...++.|..+++..
T Consensus       267 ~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          267 EF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             TT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred             CC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence            64 4444444322       233333 3554444445677898888753

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.34  E-value=0.0031  Score=39.94  Aligned_cols=77  Identities=16%  Similarity=0.043  Sum_probs=51.6

Q ss_pred             CCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCC----eEEEEeeCCCEE
Q 045566           19 DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD----RCYALTVRYPLM   94 (112)
Q Consensus        19 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~----~~~~~~~~~~~~   94 (112)
                      ++.+..||+.+++...+.+... +...-.....+.+++.++.|+.++.+|.++++.+..+..+.    ..+.+..++++.
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qY  543 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEE
Confidence            5778889998888776655322 22111112235677779999999999999999998776543    346666777644


Q ss_pred             EE
Q 045566           95 VV   96 (112)
Q Consensus        95 ~~   96 (112)
                      ++
T Consensus       544 v~  545 (582)
T 1flg_A          544 LG  545 (582)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.25  E-value=0.012  Score=35.98  Aligned_cols=107  Identities=8%  Similarity=0.041  Sum_probs=61.4

Q ss_pred             eeEEEcCCCCEEEEEcCC---Cc-EEEEEcCCCCC-cEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCce
Q 045566            2 LCSTWKDDGTTVFSGGCD---KQ-VKMWPLLSGGQ-PVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNPV   75 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~---~~-v~~~~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~~   75 (112)
                      ..++++++++++++...+   .. +...+...... ...+. .......++++| ++.++++-..++.|+.++..++...
T Consensus       185 ~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~  263 (433)
T 4hw6_A          185 ADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT  263 (433)
T ss_dssp             EEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE
T ss_pred             cEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE
Confidence            468899988844443321   11 22232221111 11222 233446788999 7777777667888999998766542


Q ss_pred             EEe-c--C--CCeEEEEeeCCCEEEEEe-CCCcEEEEECc
Q 045566           76 HTQ-Q--L--PDRCYALTVRYPLMVVGT-ADRNLVVFNLQ  109 (112)
Q Consensus        76 ~~~-~--~--~~~~~~~~~~~~~~~~~~-~d~~v~~~d~~  109 (112)
                      ..+ .  .  ....++++++++.|+.+. ..+.|..+++.
T Consensus       264 ~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          264 EEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             EEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred             EEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence            211 1  1  123589999998665554 46778887754

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.22  E-value=0.0019  Score=36.12  Aligned_cols=97  Identities=8%  Similarity=-0.103  Sum_probs=59.2

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCc-----EEEee--ccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQP-----VTVAM--HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN   73 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~-----~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~   73 (112)
                      +..++|+|+|.+.++  .++.+.-.+..+....     .+..+  --....++.|.|++.+.++  .|+.|+-++..+..
T Consensus        43 ~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~  118 (236)
T 1tl2_A           43 FKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSD  118 (236)
T ss_dssp             CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCST
T ss_pred             ceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCC
Confidence            357999999987776  6677666665432211     11111  1112578899999998877  55888878764432


Q ss_pred             ce-------EEec---CCCeEEEEeeCCCEEEEEeCCCcE
Q 045566           74 PV-------HTQQ---LPDRCYALTVRYPLMVVGTADRNL  103 (112)
Q Consensus        74 ~~-------~~~~---~~~~~~~~~~~~~~~~~~~~d~~v  103 (112)
                      .-       ....   .....+.+.|+|.+.++.  |+.+
T Consensus       119 ~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~l  156 (236)
T 1tl2_A          119 TDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQF  156 (236)
T ss_dssp             TCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred             CCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence            11       1111   133678888999876666  6664

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.04  E-value=0.018  Score=36.81  Aligned_cols=103  Identities=10%  Similarity=0.123  Sum_probs=64.9

Q ss_pred             CCEEEEEcC-CCcEEEEEc-CCCCCcEEEeeccCC-----------eeEEEEccCCCE----EEEeeCCCcEEEeeCCCC
Q 045566           10 GTTVFSGGC-DKQVKMWPL-LSGGQPVTVAMHDAP-----------IKEVAWIPEMNL----LATGSWDKTLKYWDTRQP   72 (112)
Q Consensus        10 ~~~l~~~~~-~~~v~~~~~-~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~----~~~~~~~~~i~~w~~~~~   72 (112)
                      +..+++++. ++.|.-+|. .+++.+.++......           ...+++.|.+..    ++.++.++.+..+|.+++
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            446677777 789999999 888887766432110           123445332333    677778999999999999


Q ss_pred             CceEEecCCCe----EEEEee--CCCEEEEEe------CCCcEEEEECcCCC
Q 045566           73 NPVHTQQLPDR----CYALTV--RYPLMVVGT------ADRNLVVFNLQNPQ  112 (112)
Q Consensus        73 ~~~~~~~~~~~----~~~~~~--~~~~~~~~~------~d~~v~~~d~~~~~  112 (112)
                      +.+........    .+.-.|  .+..+++++      .++.|+.+|.++++
T Consensus       142 ~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~  193 (599)
T 1w6s_A          142 ETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGE  193 (599)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCC
T ss_pred             CEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCc
Confidence            98866543210    000011  134566655      37899999998875

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=96.92  E-value=0.019  Score=32.67  Aligned_cols=105  Identities=8%  Similarity=0.046  Sum_probs=65.6

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCC---CCCcEEEe-------eccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCC
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLS---GGQPVTVA-------MHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTR   70 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~---~~~~~~~~-------~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~   70 (112)
                      ..++|+|.++.|+++.+.....+|....   ...+....       .+...+..++++| .+.+++....++.+..+|..
T Consensus       124 EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~  203 (255)
T 3qqz_A          124 EGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV  203 (255)
T ss_dssp             EEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             ceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC
Confidence            4689999888777777655555555431   11122221       1233568999999 56667777778889999976


Q ss_pred             CCCceEEecC------------CCeEEEEeeCCCEEEEEeCCCcEEEEEC
Q 045566           71 QPNPVHTQQL------------PDRCYALTVRYPLMVVGTADRNLVVFNL  108 (112)
Q Consensus        71 ~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~d~~v~~~d~  108 (112)
                      .. .+..+..            ....++|.++|+.+++ +.-..++.+.-
T Consensus       204 g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~  251 (255)
T 3qqz_A          204 GE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP  251 (255)
T ss_dssp             CC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred             CC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence            43 4433321            2267999999985554 55556666643

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=96.91  E-value=0.039  Score=36.11  Aligned_cols=104  Identities=13%  Similarity=0.071  Sum_probs=61.9

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe-----eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceE
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA-----MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVH   76 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~   76 (112)
                      .+++..++++.|..|+.++-+..++..+++. ..+.     .....|.++...+++.+.+... + -+..|+..+.+...
T Consensus       409 ~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~-~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~-Gl~~~~~~~~~~~~  485 (795)
T 4a2l_A          409 KAVYVDEKKSLVYIGTHAGGLSILHRNSGQV-ENFNQRNSQLVNENVYAILPDGEGNLWLGTL-S-ALVRFNPEQRSFTT  485 (795)
T ss_dssp             EEEEEETTTTEEEEEETTTEEEEEETTTCCE-EEECTTTSCCSCSCEEEEEECSSSCEEEEES-S-CEEEEETTTTEEEE
T ss_pred             EEEEEcCCCCEEEEEeCcCceeEEeCCCCcE-EEeecCCCCcCCCeeEEEEECCCCCEEEEec-C-ceeEEeCCCCeEEE
Confidence            4566667777566677767788998765543 2222     1235688888888888666554 4 47788876653322


Q ss_pred             Eec---------CCCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           77 TQQ---------LPDRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        77 ~~~---------~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      ...         ..+..+..+.++. +..++. +.+..||..+
T Consensus       486 ~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~-~Gl~~~~~~~  526 (795)
T 4a2l_A          486 IEKEKDGTPVVSKQITTLFRDSHKR-LWIGGE-EGLSVFKQEG  526 (795)
T ss_dssp             CCBCTTCCBCCCCCEEEEEECTTCC-EEEEES-SCEEEEEEET
T ss_pred             ccccccccccCCceEEEEEECCCCC-EEEEeC-CceEEEeCCC
Confidence            111         1123444555565 444555 5688887654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.82  E-value=0.029  Score=33.29  Aligned_cols=98  Identities=6%  Similarity=0.009  Sum_probs=61.7

Q ss_pred             eEEEcCCCCEEEEE-cCCCcEEEEEcCCCCCcEE-Eee----c--cCCeeEEEE---ccCCCEEEEee------------
Q 045566            3 CSTWKDDGTTVFSG-GCDKQVKMWPLLSGGQPVT-VAM----H--DAPIKEVAW---IPEMNLLATGS------------   59 (112)
Q Consensus         3 ~~~~~~~~~~l~~~-~~~~~v~~~~~~~~~~~~~-~~~----~--~~~v~~~~~---~~~~~~~~~~~------------   59 (112)
                      +.+|++....+..+ -..+.|..|+...+..... +..    .  ......+.+   .|++.+++...            
T Consensus        17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~   96 (334)
T 2p9w_A           17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSS   96 (334)
T ss_dssp             CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCS
T ss_pred             CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccccc
Confidence            67898855555555 4789999999764433222 111    0  113578999   68887777543            


Q ss_pred             -CCCcEEEeeCC---CCCceEEecC----------------CCeEEEEeeCCCEEEEEeCC
Q 045566           60 -WDKTLKYWDTR---QPNPVHTQQL----------------PDRCYALTVRYPLMVVGTAD  100 (112)
Q Consensus        60 -~~~~i~~w~~~---~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~d  100 (112)
                       .++.+..+|+.   +++.+.....                ....++..++|+..++++..
T Consensus        97 ~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~  157 (334)
T 2p9w_A           97 HGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALG  157 (334)
T ss_dssp             SSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEES
T ss_pred             CCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCC
Confidence             25778999998   6665543321                13466777788877766655

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.81  E-value=0.034  Score=34.00  Aligned_cols=109  Identities=4%  Similarity=-0.020  Sum_probs=59.6

Q ss_pred             eeEEEcCC--CCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCC---Cc-EEEeeCCCCCc-
Q 045566            2 LCSTWKDD--GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWD---KT-LKYWDTRQPNP-   74 (112)
Q Consensus         2 ~~~~~~~~--~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~-i~~w~~~~~~~-   74 (112)
                      ..++|+|+  ...|+.+...+.|+.++..++.. ..+.........+++++++.++++....   .. +...+...... 
T Consensus       142 ~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v-~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~  220 (433)
T 4hw6_A          142 WRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYV-DIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTE  220 (433)
T ss_dssp             CEEEECTTTTTCEEEEECBTSCEEEEETTTTEE-EEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCC
T ss_pred             ceEEEccccCCCEEEEEeCCCCEEEEECCCCEE-EEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeec
Confidence            36788884  44455554447899998765443 3333344557899999999855554322   11 22233221111 


Q ss_pred             --eEEecCCCeEEEEee-CCCEEEEEeCCCcEEEEECcCC
Q 045566           75 --VHTQQLPDRCYALTV-RYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        75 --~~~~~~~~~~~~~~~-~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                        ..........+++++ ++.++++-..++.|+.+|..++
T Consensus       221 ~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g  260 (433)
T 4hw6_A          221 RLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATG  260 (433)
T ss_dssp             EEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTC
T ss_pred             cccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCC
Confidence              111112224566777 5555445445667777776543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.71  E-value=0.043  Score=33.82  Aligned_cols=90  Identities=11%  Similarity=0.086  Sum_probs=59.3

Q ss_pred             CcEEEEEcCCCCCcEEEeec----cCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC------------ceEEec----
Q 045566           20 KQVKMWPLLSGGQPVTVAMH----DAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN------------PVHTQQ----   79 (112)
Q Consensus        20 ~~v~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~------------~~~~~~----   79 (112)
                      +.||.-++.....-+.+...    -..+..+..+|+|.+++..+ ++.|.+-.+..+.            ....+.    
T Consensus        41 n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~  119 (452)
T 3pbp_A           41 NIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE  119 (452)
T ss_dssp             TEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC
T ss_pred             CEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCc
Confidence            45666666544333344322    22578899999999988774 5578887776221            011221    


Q ss_pred             -----CCCeEEEEeeC---CCEEEEEeCCCcEEEEECcC
Q 045566           80 -----LPDRCYALTVR---YPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        80 -----~~~~~~~~~~~---~~~~~~~~~d~~v~~~d~~~  110 (112)
                           .++..+.|||-   +..+++-..|+.|++||+..
T Consensus       120 ~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A          120 EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN  158 (452)
T ss_dssp             C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred             ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence                 23567888884   56899999999999999875

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=96.56  E-value=0.047  Score=32.31  Aligned_cols=108  Identities=10%  Similarity=-0.079  Sum_probs=64.7

Q ss_pred             eeEEEcCCCCEE-EEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566            2 LCSTWKDDGTTV-FSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         2 ~~~~~~~~~~~l-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      ..++|++.+..| ++-...+.|..+++..................+++.+ .+.++++-...+.|.+.++..........
T Consensus        76 ~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~  155 (349)
T 3v64_C           76 IALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW  155 (349)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred             EEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEe
Confidence            367888755444 4445667888888765443333332233457888987 45555666667889999887554333222


Q ss_pred             C---CCeEEEEeeCCCEEEEEeC-C-CcEEEEECc
Q 045566           80 L---PDRCYALTVRYPLMVVGTA-D-RNLVVFNLQ  109 (112)
Q Consensus        80 ~---~~~~~~~~~~~~~~~~~~~-d-~~v~~~d~~  109 (112)
                      .   ....++++|.+..++.... + +.|...++.
T Consensus       156 ~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d  190 (349)
T 3v64_C          156 QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD  190 (349)
T ss_dssp             TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC
Confidence            2   2356788886555554443 3 567766654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.53  E-value=0.0081  Score=35.63  Aligned_cols=103  Identities=11%  Similarity=0.090  Sum_probs=63.5

Q ss_pred             CCEEEEEcCCCcEEEEEcCCCCCcEEEeecc-CCeeEEEEc--c-CCCEEEEe-eCCCcEEEeeCCCCCceEEecCC---
Q 045566           10 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHD-APIKEVAWI--P-EMNLLATG-SWDKTLKYWDTRQPNPVHTQQLP---   81 (112)
Q Consensus        10 ~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~v~~~~~~--~-~~~~~~~~-~~~~~i~~w~~~~~~~~~~~~~~---   81 (112)
                      +..++.++.||.|.-.|..+++...++.... .+.....-.  + ++..++.. ..||.+..++..++........+   
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            3478889999999999998888877775431 222221100  1 22333333 57999999998776443333211   


Q ss_pred             -CeEEEEe-------e----CCCEEEEEeCCCcEEEEECcCCC
Q 045566           82 -DRCYALT-------V----RYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        82 -~~~~~~~-------~----~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                       ...+...       +    .+..+++++.++.+...|+++|+
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~  132 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGE  132 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCC
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCc
Confidence             1112211       0    45578899999999999988875

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=96.51  E-value=0.084  Score=34.62  Aligned_cols=106  Identities=16%  Similarity=0.124  Sum_probs=62.4

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe---------eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCC
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA---------MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP   72 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~   72 (112)
                      .++..+++|.. ..|+.++-+..|+..++... .+.         .....|.++...+++..+..|+.++-+..+|..++
T Consensus       360 ~~i~~d~~g~l-WiGt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~  437 (795)
T 4a2l_A          360 SCIVEDKDKNL-WIGTNDGGLNLYNPITQRFT-SYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSG  437 (795)
T ss_dssp             EEEEECTTSCE-EEEESSSCEEEECTTTCCEE-EECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTC
T ss_pred             EEEEECCCCCE-EEEECCCCeEEEcCCCCcEE-EEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCC
Confidence            45666666654 45666667888886654332 221         11356888888888883455666666888998776


Q ss_pred             CceEEec-------CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           73 NPVHTQQ-------LPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        73 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      +...-..       ..+..+...+++. +..|+. +.+..||..++
T Consensus       438 ~~~~~~~~~~~l~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~  481 (795)
T 4a2l_A          438 QVENFNQRNSQLVNENVYAILPDGEGN-LWLGTL-SALVRFNPEQR  481 (795)
T ss_dssp             CEEEECTTTSCCSCSCEEEEEECSSSC-EEEEES-SCEEEEETTTT
T ss_pred             cEEEeecCCCCcCCCeeEEEEECCCCC-EEEEec-CceeEEeCCCC
Confidence            5332211       1223444445555 455555 56888887653

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=96.40  E-value=0.065  Score=32.17  Aligned_cols=108  Identities=9%  Similarity=-0.085  Sum_probs=63.1

Q ss_pred             eeEEEcCCCC-EEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566            2 LCSTWKDDGT-TVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         2 ~~~~~~~~~~-~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      ..++|++.+. ++++-...+.|..+++........+.........+++.+ .+.++++-...+.|.+.++..........
T Consensus       119 ~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~  198 (386)
T 3v65_B          119 IALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW  198 (386)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEEC
T ss_pred             EEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeec
Confidence            3578887544 445555677888888765443222222223446788887 45555666667788888876544332222


Q ss_pred             C---CCeEEEEeeCCCEEEEEeC-C-CcEEEEECc
Q 045566           80 L---PDRCYALTVRYPLMVVGTA-D-RNLVVFNLQ  109 (112)
Q Consensus        80 ~---~~~~~~~~~~~~~~~~~~~-d-~~v~~~d~~  109 (112)
                      .   ....++++|.+..++.... + +.|...++.
T Consensus       199 ~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d  233 (386)
T 3v65_B          199 QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD  233 (386)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC
Confidence            2   2356778876665555443 3 456666653

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.33  E-value=0.055  Score=34.76  Aligned_cols=92  Identities=7%  Similarity=-0.003  Sum_probs=52.1

Q ss_pred             CcEEEEEcCCCCCcEEEeecc---------CCeeEEEEcc-CCCEEEEeeCCC-----------cEEEeeCCCCCceEEe
Q 045566           20 KQVKMWPLLSGGQPVTVAMHD---------APIKEVAWIP-EMNLLATGSWDK-----------TLKYWDTRQPNPVHTQ   78 (112)
Q Consensus        20 ~~v~~~~~~~~~~~~~~~~~~---------~~v~~~~~~~-~~~~~~~~~~~~-----------~i~~w~~~~~~~~~~~   78 (112)
                      ..+..||..+...........         ..-.++.+.. +++.++.|+.+.           .+.+||..+.......
T Consensus       369 ~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~  448 (656)
T 1k3i_A          369 TAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA  448 (656)
T ss_dssp             SEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC
T ss_pred             cceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc
Confidence            346778876654322221111         1223444444 677888877532           5778888766544332


Q ss_pred             --cCC----CeEEEEeeCCCEEEEEeCC-----------CcEEEEECcCC
Q 045566           79 --QLP----DRCYALTVRYPLMVVGTAD-----------RNLVVFNLQNP  111 (112)
Q Consensus        79 --~~~----~~~~~~~~~~~~~~~~~~d-----------~~v~~~d~~~~  111 (112)
                        ..+    .......+++..++.|+.+           ..+.+||..+.
T Consensus       449 ~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~  498 (656)
T 1k3i_A          449 SNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD  498 (656)
T ss_dssp             TTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT
T ss_pred             cCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCC
Confidence              111    1234556789988888754           45788987653

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.16  E-value=0.056  Score=35.17  Aligned_cols=106  Identities=8%  Similarity=-0.146  Sum_probs=55.0

Q ss_pred             eEEEcCCCCEEEEEcC--CCcEEEEEcCCCCCcEEEeeccCCeeEEEEccC-CCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566            3 CSTWKDDGTTVFSGGC--DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPE-MNLLATGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      .++++|.+..|+....  .+.|...++..................++++|+ +.++++-...+.|..+++..........
T Consensus       500 giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~  579 (699)
T 1n7d_A          500 AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE  579 (699)
T ss_dssp             CEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECC
T ss_pred             eEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEe
Confidence            4667775544444332  256666665432222221222234467999985 4555565667789999986543322221


Q ss_pred             C-----CCeEEEEeeCCCEEE-EEeCCCcEEEEECcC
Q 045566           80 L-----PDRCYALTVRYPLMV-VGTADRNLVVFNLQN  110 (112)
Q Consensus        80 ~-----~~~~~~~~~~~~~~~-~~~~d~~v~~~d~~~  110 (112)
                      .     ....+++.  +..++ +-...+.|..+|..+
T Consensus       580 ~~~~~~~P~glavd--~~~lywtd~~~~~V~~~d~~~  614 (699)
T 1n7d_A          580 DEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLT  614 (699)
T ss_dssp             CSSSCSSCCCCEEE--TTEEEEECSTTTCEEEEETTT
T ss_pred             cCCcCCCceEeEEE--CCEEEEEeCCCCeEEEEEccC
Confidence            1     11233333  33444 444456788887654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=96.16  E-value=0.088  Score=31.17  Aligned_cols=107  Identities=8%  Similarity=-0.092  Sum_probs=63.6

Q ss_pred             eEEEcCC-CCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccC-CCEEEEeeCC-CcEEEeeCCCCCceEEec
Q 045566            3 CSTWKDD-GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPE-MNLLATGSWD-KTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         3 ~~~~~~~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~-~~i~~w~~~~~~~~~~~~   79 (112)
                      .+++++. ++..++-...+.|.+.++..................++++|. +.++++-... +.|...++..........
T Consensus       120 glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~  199 (349)
T 3v64_C          120 GLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD  199 (349)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCC
T ss_pred             EEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEE
Confidence            4677764 444455566678888887644332223333345688999984 4455555445 778888876543222111


Q ss_pred             C---CCeEEEEeeCCCEEEEEeC-CCcEEEEECc
Q 045566           80 L---PDRCYALTVRYPLMVVGTA-DRNLVVFNLQ  109 (112)
Q Consensus        80 ~---~~~~~~~~~~~~~~~~~~~-d~~v~~~d~~  109 (112)
                      .   ....+++++.+..|+.+.. .+.|..+|+.
T Consensus       200 ~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d  233 (349)
T 3v64_C          200 THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD  233 (349)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence            1   2357888886666665544 5567777764

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.05  E-value=0.093  Score=30.55  Aligned_cols=107  Identities=12%  Similarity=-0.080  Sum_probs=61.8

Q ss_pred             eeEEEcCCCC-EEEEEcCCCcEEEEEcCCC---CCcEE-EeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCce
Q 045566            2 LCSTWKDDGT-TVFSGGCDKQVKMWPLLSG---GQPVT-VAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNPV   75 (112)
Q Consensus         2 ~~~~~~~~~~-~l~~~~~~~~v~~~~~~~~---~~~~~-~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~~   75 (112)
                      ..++|++.+. .+++-..++.|..+++...   ..... +.........+++.+ .+..+++-...+.|.+.++......
T Consensus        33 ~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~  112 (316)
T 1ijq_A           33 VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK  112 (316)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEE
T ss_pred             EEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceE
Confidence            3678888654 4455566788998987651   22222 222223457888986 4555566567788999998654332


Q ss_pred             EEec---CCCeEEEEeeCCCEEEEEeCC--CcEEEEEC
Q 045566           76 HTQQ---LPDRCYALTVRYPLMVVGTAD--RNLVVFNL  108 (112)
Q Consensus        76 ~~~~---~~~~~~~~~~~~~~~~~~~~d--~~v~~~d~  108 (112)
                      ....   .....++++|.+..++.+...  +.|...++
T Consensus       113 ~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~  150 (316)
T 1ijq_A          113 TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL  150 (316)
T ss_dssp             EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             EEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcC
Confidence            2222   123567788766655555432  56666654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=95.98  E-value=0.081  Score=34.46  Aligned_cols=107  Identities=5%  Similarity=-0.138  Sum_probs=57.7

Q ss_pred             eEEEcCC-CCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCC-EEEEeeCC-CcEEEeeCCCCCceEEec
Q 045566            3 CSTWKDD-GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMN-LLATGSWD-KTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         3 ~~~~~~~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~-~~i~~w~~~~~~~~~~~~   79 (112)
                      .+++++. ++++++-...+.|.+.++........+.........++++|.+. ++++-... +.|...++..........
T Consensus       457 glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~  536 (699)
T 1n7d_A          457 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  536 (699)
T ss_dssp             CEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESC
T ss_pred             eEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEe
Confidence            4566643 34444445567788888654332222222223457788988544 44433233 678877765432221111


Q ss_pred             ---CCCeEEEEeeCCCEEEEE-eCCCcEEEEECc
Q 045566           80 ---LPDRCYALTVRYPLMVVG-TADRNLVVFNLQ  109 (112)
Q Consensus        80 ---~~~~~~~~~~~~~~~~~~-~~d~~v~~~d~~  109 (112)
                         .....+++++++..|+.+ ...+.|..+|+.
T Consensus       537 ~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d  570 (699)
T 1n7d_A          537 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  570 (699)
T ss_dssp             SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSS
T ss_pred             CCCCCccEEEEeccCCEEEEEecCCCeEEEEccC
Confidence               123568888876555554 445678887764

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=95.96  E-value=0.12  Score=31.01  Aligned_cols=97  Identities=8%  Similarity=0.143  Sum_probs=59.7

Q ss_pred             CCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccC----CC---EEEEe-eC--CCcEEEeeCC-CCCceEEe
Q 045566           10 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPE----MN---LLATG-SW--DKTLKYWDTR-QPNPVHTQ   78 (112)
Q Consensus        10 ~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~~~~~-~~--~~~i~~w~~~-~~~~~~~~   78 (112)
                      ...++....++-+.+||+ .++.+..+..  +.++.+...|+    ++   +.++. ..  ++.+.+|++. ....+...
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i  116 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM  116 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence            345555566678999998 7888777653  45677777663    22   22333 33  5789999663 22234333


Q ss_pred             c----------CCCeEEEE--eeC-CC-EEEEEeCCCcEEEEECc
Q 045566           79 Q----------LPDRCYAL--TVR-YP-LMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        79 ~----------~~~~~~~~--~~~-~~-~~~~~~~d~~v~~~d~~  109 (112)
                      .          .....+++  ++. +. ++++...++.+..|++.
T Consensus       117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~  161 (355)
T 3amr_A          117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELK  161 (355)
T ss_dssp             SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEE
T ss_pred             cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEE
Confidence            1          12234566  553 43 68888889999998873

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=95.71  E-value=0.14  Score=29.83  Aligned_cols=107  Identities=5%  Similarity=-0.152  Sum_probs=62.5

Q ss_pred             eEEEcCCC-CEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCC-EEEEeeCC-CcEEEeeCCCCCceEEec
Q 045566            3 CSTWKDDG-TTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMN-LLATGSWD-KTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         3 ~~~~~~~~-~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~-~~i~~w~~~~~~~~~~~~   79 (112)
                      .+++++.+ +..++-..++.|.+.++..................++++|.+. .+++.... +.|...++..........
T Consensus        81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~  160 (316)
T 1ijq_A           81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  160 (316)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred             EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEE
Confidence            56777644 4445556677888888753332222222335568899998544 44444333 678888775433222211


Q ss_pred             C---CCeEEEEeeCCCEEEEEe-CCCcEEEEECc
Q 045566           80 L---PDRCYALTVRYPLMVVGT-ADRNLVVFNLQ  109 (112)
Q Consensus        80 ~---~~~~~~~~~~~~~~~~~~-~d~~v~~~d~~  109 (112)
                      .   ....+++++++..++.+. ..+.|..+|+.
T Consensus       161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d  194 (316)
T 1ijq_A          161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  194 (316)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCCCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence            1   235788888776666654 45678888765

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=95.64  E-value=0.21  Score=31.39  Aligned_cols=106  Identities=7%  Similarity=0.035  Sum_probs=61.6

Q ss_pred             eEEEcC-CCCEEEEEcC-CCcEEEEEcCCCCCcEEEeec---cCCeeEEEE-------ccCCCEEEEeeCCC-------c
Q 045566            3 CSTWKD-DGTTVFSGGC-DKQVKMWPLLSGGQPVTVAMH---DAPIKEVAW-------IPEMNLLATGSWDK-------T   63 (112)
Q Consensus         3 ~~~~~~-~~~~l~~~~~-~~~v~~~~~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~~~~~~~~~-------~   63 (112)
                      .++|+| +...|+.+.. .+.|++.|+..+.........   ......++|       ++++..++.....+       .
T Consensus       143 ~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~  222 (496)
T 3kya_A          143 RLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPS  222 (496)
T ss_dssp             EEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEE
T ss_pred             EEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCce
Confidence            578998 3555555543 467888887654443333221   224788999       99998555554433       2


Q ss_pred             EEEeeCCC-CC--------ceEEecCCCeEEEEeeCCC-EEEEEeCCCcEEEEECc
Q 045566           64 LKYWDTRQ-PN--------PVHTQQLPDRCYALTVRYP-LMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        64 i~~w~~~~-~~--------~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~~~d~~  109 (112)
                      +.+.+... +.        .+..+. ....++++|++. ++++-..++.|..+|+.
T Consensus       223 V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd~~~g~V~r~d~~  277 (496)
T 3kya_A          223 VYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFNSYEKGQVFRLDLV  277 (496)
T ss_dssp             EEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred             EEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence            56665333 11        122222 335667888544 44555567779998876

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=95.61  E-value=0.18  Score=30.35  Aligned_cols=108  Identities=5%  Similarity=-0.088  Sum_probs=59.5

Q ss_pred             eeEEEcCCCCEEEEE-cCC-CcEEEEEcCCCCCcEEEeeccCCeeEEEEccCC-CEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566            2 LCSTWKDDGTTVFSG-GCD-KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEM-NLLATGSWDKTLKYWDTRQPNPVHTQ   78 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~-~~~-~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~i~~w~~~~~~~~~~~   78 (112)
                      ..++++|.+..|+.. ... +.|...++..................++++|++ .++++-...+.|..+++.........
T Consensus       205 ~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~  284 (386)
T 3v65_B          205 RAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVI  284 (386)
T ss_dssp             EEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEE
T ss_pred             cEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEE
Confidence            357788866555444 333 677777765333322222233446789999754 45555556778999988654333222


Q ss_pred             cC---CCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           79 QL---PDRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        79 ~~---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      ..   ....+++ ..+..+++-...+.|..+|..+
T Consensus       285 ~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~  318 (386)
T 3v65_B          285 SQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFT  318 (386)
T ss_dssp             CSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTT
T ss_pred             ECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCC
Confidence            21   1134444 3344444444566777777433

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=95.59  E-value=0.18  Score=30.44  Aligned_cols=108  Identities=13%  Similarity=-0.072  Sum_probs=62.8

Q ss_pred             eeEEEcCCCCEE-EEEcCCCcEEEEEcCCCC---CcEEE-eeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCce
Q 045566            2 LCSTWKDDGTTV-FSGGCDKQVKMWPLLSGG---QPVTV-AMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNPV   75 (112)
Q Consensus         2 ~~~~~~~~~~~l-~~~~~~~~v~~~~~~~~~---~~~~~-~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~~   75 (112)
                      ..++|++.+..| ++-...+.|+.+++....   ....+ .........+++.+ .+.++++-...+.|.+.++......
T Consensus       115 ~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~  194 (400)
T 3p5b_L          115 VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK  194 (400)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEE
T ss_pred             eEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceE
Confidence            467888855544 444556778888875421   12222 22334567888987 5666666667788999888765433


Q ss_pred             EEecC---CCeEEEEeeCCCEEEEEeC--CCcEEEEECc
Q 045566           76 HTQQL---PDRCYALTVRYPLMVVGTA--DRNLVVFNLQ  109 (112)
Q Consensus        76 ~~~~~---~~~~~~~~~~~~~~~~~~~--d~~v~~~d~~  109 (112)
                      .....   ....++++|.+..++....  .+.|...++.
T Consensus       195 ~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d  233 (400)
T 3p5b_L          195 TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN  233 (400)
T ss_dssp             EEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT
T ss_pred             EEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC
Confidence            33222   2356788876655555542  3566666653

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=95.21  E-value=0.37  Score=31.63  Aligned_cols=104  Identities=12%  Similarity=0.051  Sum_probs=58.0

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe---eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA---MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ   78 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~   78 (112)
                      .++...+++...+ |+.++-+..++..+++. ..+.   .....|.++...+++.+.+.. . +-+..++..+.+.....
T Consensus       410 ~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~-~~~~~~~~~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~  485 (781)
T 3v9f_A          410 LCSLKDSEGNLWF-GTYLGNISYYNTRLKKF-QIIELEKNELLDVRVFYEDKNKKIWIGT-H-AGVFVIDLASKKVIHHY  485 (781)
T ss_dssp             EEEEECTTSCEEE-EETTEEEEEECSSSCEE-EECCSTTTCCCCEEEEEECTTSEEEEEE-T-TEEEEEESSSSSCCEEE
T ss_pred             EEEEECCCCCEEE-EeccCCEEEEcCCCCcE-EEeccCCCCCCeEEEEEECCCCCEEEEE-C-CceEEEeCCCCeEEecc
Confidence            3455555565444 55555677777654432 2221   123568888888887765544 4 45788888765433222


Q ss_pred             cC--------CCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           79 QL--------PDRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        79 ~~--------~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      ..        .+..+....++. +..++.++.+..+|.++
T Consensus       486 ~~~~~~~~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~  524 (781)
T 3v9f_A          486 DTSNSQLLENFVRSIAQDSEGR-FWIGTFGGGVGIYTPDM  524 (781)
T ss_dssp             CTTTSSCSCSCEEEEEECTTCC-EEEEESSSCEEEECTTC
T ss_pred             cCcccccccceeEEEEEcCCCC-EEEEEcCCCEEEEeCCC
Confidence            11        223444555555 55566555577777654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=95.07  E-value=0.25  Score=28.92  Aligned_cols=107  Identities=7%  Similarity=-0.122  Sum_probs=62.6

Q ss_pred             eEEEcCC-CCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEee--CCCcEEEeeCCCCCceEEec
Q 045566            3 CSTWKDD-GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGS--WDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         3 ~~~~~~~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~i~~w~~~~~~~~~~~~   79 (112)
                      .+++++. ++..++-...+.|.++++..................+++.|.+..+....  ..+.|...++..........
T Consensus        83 glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~  162 (318)
T 3sov_A           83 GLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN  162 (318)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred             EEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEE
Confidence            4677763 44445555667888888754333222223344568899998544444333  35778888876433322222


Q ss_pred             C---CCeEEEEeeCCCEEEEEe-CCCcEEEEECc
Q 045566           80 L---PDRCYALTVRYPLMVVGT-ADRNLVVFNLQ  109 (112)
Q Consensus        80 ~---~~~~~~~~~~~~~~~~~~-~d~~v~~~d~~  109 (112)
                      .   ....+++++++..++.+. ..+.|..+|+.
T Consensus       163 ~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d  196 (318)
T 3sov_A          163 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD  196 (318)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCC
Confidence            2   235788888666666654 45668777764

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=94.99  E-value=0.31  Score=29.50  Aligned_cols=107  Identities=5%  Similarity=-0.131  Sum_probs=63.4

Q ss_pred             eEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCC-EEEEeeC-CCcEEEeeCCCCCceEEec
Q 045566            3 CSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMN-LLATGSW-DKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         3 ~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~-~~~i~~w~~~~~~~~~~~~   79 (112)
                      .+++++ .+++.++-...+.|.+.++........+.........++++|.+. ++.+-.. .+.|...++..........
T Consensus       163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~  242 (400)
T 3p5b_L          163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  242 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC
T ss_pred             cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE
Confidence            466776 444445555667888888654433233333344568899998544 4444323 4678888876544333222


Q ss_pred             C---CCeEEEEeeCCCEEEEEeC-CCcEEEEECc
Q 045566           80 L---PDRCYALTVRYPLMVVGTA-DRNLVVFNLQ  109 (112)
Q Consensus        80 ~---~~~~~~~~~~~~~~~~~~~-d~~v~~~d~~  109 (112)
                      .   ....+++++.+..|+.+.. ...|..+|+.
T Consensus       243 ~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d  276 (400)
T 3p5b_L          243 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  276 (400)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC
Confidence            2   2357888887776666644 4567777764

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=94.98  E-value=0.3  Score=29.35  Aligned_cols=106  Identities=9%  Similarity=0.121  Sum_probs=66.0

Q ss_pred             eEEE--cCC-CC-EEEEEcCCCcEEEEEcCC---C----CCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCC-
Q 045566            3 CSTW--KDD-GT-TVFSGGCDKQVKMWPLLS---G----GQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR-   70 (112)
Q Consensus         3 ~~~~--~~~-~~-~l~~~~~~~~v~~~~~~~---~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~-   70 (112)
                      .+|+  +|. +. ++++...++.+..|++..   +    +.++++. -.+.+..+...+....++.+-++.-|..++.+ 
T Consensus       132 Glcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~-lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p  210 (355)
T 3amr_A          132 GFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK-MNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEP  210 (355)
T ss_dssp             CEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE-CSSCEEEEEEETTTTEEEEEETTTEEEEEECST
T ss_pred             EEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec-CCCCcceEEEcCCCCeEEEecccceEEEEeCCc
Confidence            3566  663 44 677788889999888732   2    2233443 24567788888877788888888666666644 


Q ss_pred             -C---CCceEEec-----CCCeEEEE--eeCCC-EEEEEe-CCCcEEEEECc
Q 045566           71 -Q---PNPVHTQQ-----LPDRCYAL--TVRYP-LMVVGT-ADRNLVVFNLQ  109 (112)
Q Consensus        71 -~---~~~~~~~~-----~~~~~~~~--~~~~~-~~~~~~-~d~~v~~~d~~  109 (112)
                       .   .+.+....     .....+++  .+++. ++++++ .+....+||.+
T Consensus       211 ~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          211 DGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             TSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             CCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence             2   22333221     23456666  34445 565555 57789999986

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=94.98  E-value=0.28  Score=29.08  Aligned_cols=93  Identities=11%  Similarity=0.060  Sum_probs=53.7

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCC--cEEEe---eccCCeeEEEEccC----CCEEEEeeCC-----CcEEEe
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ--PVTVA---MHDAPIKEVAWIPE----MNLLATGSWD-----KTLKYW   67 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~--~~~~~---~~~~~v~~~~~~~~----~~~~~~~~~~-----~~i~~w   67 (112)
                      ..++|.|+|+.+++ ..++.|.+++  .++.  ...+.   ........++++|+    +.++++-...     +.|..+
T Consensus        34 ~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~  110 (352)
T 2ism_A           34 WALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRL  110 (352)
T ss_dssp             EEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEE
T ss_pred             eEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEE
Confidence            36889999986555 4558899888  2321  11111   12356789999997    4444443332     557777


Q ss_pred             eCCCCC-----ceE-EecC------CCeEEEEeeCCCEEEEE
Q 045566           68 DTRQPN-----PVH-TQQL------PDRCYALTVRYPLMVVG   97 (112)
Q Consensus        68 ~~~~~~-----~~~-~~~~------~~~~~~~~~~~~~~~~~   97 (112)
                      +.....     .+. .+..      ....+.|.+++.++++.
T Consensus       111 ~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A          111 RHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT  152 (352)
T ss_dssp             EECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred             EeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence            765431     111 1221      12578899999655553

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=94.94  E-value=0.45  Score=31.23  Aligned_cols=105  Identities=9%  Similarity=-0.098  Sum_probs=57.2

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeec-----cCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceE
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMH-----DAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVH   76 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~   76 (112)
                      .++...+++...+ |+. +-+..++..+++........     ...|.++...+++...+.....| +..+|..+.+. .
T Consensus       453 ~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~-~  528 (781)
T 3v9f_A          453 RVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLV-R  528 (781)
T ss_dssp             EEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEE-E
T ss_pred             EEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeE-E
Confidence            3455555665444 444 45888887655443222111     35688998888888766554345 66677765432 2


Q ss_pred             EecC-------CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           77 TQQL-------PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        77 ~~~~-------~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      .+..       .+..+...+++. +..++.+|-+..||.++.
T Consensus       529 ~~~~~~~l~~~~i~~i~~d~~g~-lWi~T~~Glv~~~d~~~~  569 (781)
T 3v9f_A          529 KFNQYEGFCSNTINQIYRSSKGQ-MWLATGEGLVCFPSARNF  569 (781)
T ss_dssp             EECTTTTCSCSCEEEEEECTTSC-EEEEETTEEEEESCTTTC
T ss_pred             EccCCCCCCCCeeEEEEECCCCC-EEEEECCCceEEECCCCC
Confidence            2221       123444445555 444555554377776543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=94.91  E-value=0.26  Score=28.36  Aligned_cols=70  Identities=11%  Similarity=0.033  Sum_probs=44.9

Q ss_pred             CCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC--CCeEEEEeeCCCEEEEEeCCC--cEEEEECcCC
Q 045566           41 APIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL--PDRCYALTVRYPLMVVGTADR--NLVVFNLQNP  111 (112)
Q Consensus        41 ~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~--~v~~~d~~~~  111 (112)
                      .....++|++++.++++-..++.|..+|.... .......  ....+++.++++.+++.....  .|..+|..++
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g  105 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG  105 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCC
Confidence            45678999999887777767888999987653 2222222  235677888888555443322  3666665544

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=94.62  E-value=0.31  Score=27.87  Aligned_cols=101  Identities=18%  Similarity=0.177  Sum_probs=51.2

Q ss_pred             CCCEEEEEcCC-------CcEEEEEcCCCCCcE--EEeeccCCeeEEEEccCCCEEEEeeCC-----CcEEEeeCCCCCc
Q 045566            9 DGTTVFSGGCD-------KQVKMWPLLSGGQPV--TVAMHDAPIKEVAWIPEMNLLATGSWD-----KTLKYWDTRQPNP   74 (112)
Q Consensus         9 ~~~~l~~~~~~-------~~v~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~i~~w~~~~~~~   74 (112)
                      +++.++.|+.+       ..+..||+.+.+-..  ..+........+.+  ++..++.|+.+     ..+..||+.+.+.
T Consensus       155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  232 (302)
T 2xn4_A          155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAW  232 (302)
T ss_dssp             TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEE
T ss_pred             CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCE
Confidence            45555655432       347788876543211  11111111122222  56677777654     4688899877653


Q ss_pred             eEEecCCC---eEEEEeeCCCEEEEEeCCC-----cEEEEECcCC
Q 045566           75 VHTQQLPD---RCYALTVRYPLMVVGTADR-----NLVVFNLQNP  111 (112)
Q Consensus        75 ~~~~~~~~---~~~~~~~~~~~~~~~~~d~-----~v~~~d~~~~  111 (112)
                      ...-..+.   .......++..++.|+.++     .+.+||+.+.
T Consensus       233 ~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          233 RQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             EEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             eeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence            32221111   1122234666777776553     4888888764

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=94.55  E-value=0.63  Score=31.05  Aligned_cols=107  Identities=5%  Similarity=-0.162  Sum_probs=63.1

Q ss_pred             eEEEcCCCC-EEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccC-CCEEEEeeCC-CcEEEeeCCCCCceEEec
Q 045566            3 CSTWKDDGT-TVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPE-MNLLATGSWD-KTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         3 ~~~~~~~~~-~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~-~~i~~w~~~~~~~~~~~~   79 (112)
                      .+++++.++ +.++-...+.|.+.++........+.........|++.|. +.++++-... +.|...++..........
T Consensus       475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~  554 (791)
T 3m0c_C          475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  554 (791)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred             eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe
Confidence            577777554 4445566778888887643332223333445789999985 4444444333 678888886554333332


Q ss_pred             C---CCeEEEEeeCCCEEEEEeC-CCcEEEEECc
Q 045566           80 L---PDRCYALTVRYPLMVVGTA-DRNLVVFNLQ  109 (112)
Q Consensus        80 ~---~~~~~~~~~~~~~~~~~~~-d~~v~~~d~~  109 (112)
                      .   ....+++++....|+.+.. ...|...|+.
T Consensus       555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d  588 (791)
T 3m0c_C          555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  588 (791)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecC
Confidence            2   2356778876666666543 4457666653

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=94.48  E-value=0.57  Score=30.29  Aligned_cols=88  Identities=8%  Similarity=-0.059  Sum_probs=54.4

Q ss_pred             EEEEEcCC----CCCcEEEeeccCCeeEEEEccCCCEEEEee-CCCcEEEeeCCCC------Cc-------eEEecC--C
Q 045566           22 VKMWPLLS----GGQPVTVAMHDAPIKEVAWIPEMNLLATGS-WDKTLKYWDTRQP------NP-------VHTQQL--P   81 (112)
Q Consensus        22 v~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~i~~w~~~~~------~~-------~~~~~~--~   81 (112)
                      |.+.|.+.    +.....+..-....+.+.++|+|++++.++ .+.++.++|++.-      +.       ......  .
T Consensus       300 v~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlG  379 (638)
T 3sbq_A          300 TPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLG  379 (638)
T ss_dssp             CCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSC
T ss_pred             eeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCc
Confidence            56666654    223322222334457899999999887655 5888999998631      11       111111  2


Q ss_pred             CeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           82 DRCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                      -...+|+++|....+.--|..|.-|++.
T Consensus       380 PlHt~Fd~~G~aYTtlfidSqvvkWni~  407 (638)
T 3sbq_A          380 PLHTTFDGRGNAYTTLFIDSQVVKWNME  407 (638)
T ss_dssp             EEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             ccEEEECCCCceEeeeeecceEEEEecc
Confidence            2456788888544555579999999875

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=94.36  E-value=0.55  Score=29.58  Aligned_cols=106  Identities=8%  Similarity=-0.049  Sum_probs=63.7

Q ss_pred             eeEEE-------cCCCCEEEEEcCCC-------cEEEEEcCC-CCCc-----EEEeeccCCeeEEEEcc-CCCEEEEeeC
Q 045566            2 LCSTW-------KDDGTTVFSGGCDK-------QVKMWPLLS-GGQP-----VTVAMHDAPIKEVAWIP-EMNLLATGSW   60 (112)
Q Consensus         2 ~~~~~-------~~~~~~l~~~~~~~-------~v~~~~~~~-~~~~-----~~~~~~~~~v~~~~~~~-~~~~~~~~~~   60 (112)
                      ..++|       +++++.|+++...+       .+.+.+... +...     ..+... .....++++| ++.++++-..
T Consensus       189 ~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~  267 (496)
T 3kya_A          189 RSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYE  267 (496)
T ss_dssp             EEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETT
T ss_pred             cEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECC
Confidence            35788       99998666665443       255565332 1221     233322 2346788899 5666667777


Q ss_pred             CCcEEEeeCC-------CCCc-----------eEE-ecC----CCeEEEEeeCCCEEEEE-eCCCcEEEEEC
Q 045566           61 DKTLKYWDTR-------QPNP-----------VHT-QQL----PDRCYALTVRYPLMVVG-TADRNLVVFNL  108 (112)
Q Consensus        61 ~~~i~~w~~~-------~~~~-----------~~~-~~~----~~~~~~~~~~~~~~~~~-~~d~~v~~~d~  108 (112)
                      ++.|..+|+.       ++..           ... ...    ....++++|+++.++.+ .....|+.++.
T Consensus       268 ~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          268 KGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             TTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence            8889999987       4432           111 111    23578999999965555 44567777553

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=94.34  E-value=0.45  Score=28.54  Aligned_cols=91  Identities=7%  Similarity=0.101  Sum_probs=53.7

Q ss_pred             CCcEEEEEcCCCCCcEE----Eeec-cCCeeEEEEccCCCEEEEeeC-----------------CCcEEEeeCCCCCceE
Q 045566           19 DKQVKMWPLLSGGQPVT----VAMH-DAPIKEVAWIPEMNLLATGSW-----------------DKTLKYWDTRQPNPVH   76 (112)
Q Consensus        19 ~~~v~~~~~~~~~~~~~----~~~~-~~~v~~~~~~~~~~~~~~~~~-----------------~~~i~~w~~~~~~~~~   76 (112)
                      +..+.+|++........    +.+. -...+.+.+.++|.++++...                 .+.+.-++..+.+.+.
T Consensus       138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~~  217 (355)
T 3sre_A          138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVA  217 (355)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEEE
T ss_pred             CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEee
Confidence            45677777654433222    2211 245688999999987776541                 2344445543211111


Q ss_pred             EecCCCeEEEEeeCCCEEEEEe-CCCcEEEEECc
Q 045566           77 TQQLPDRCYALTVRYPLMVVGT-ADRNLVVFNLQ  109 (112)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~-~d~~v~~~d~~  109 (112)
                      .--.-.+.++|+|+++.++.+. ..+.|..|++.
T Consensus       218 ~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~  251 (355)
T 3sre_A          218 EGFDFANGINISPDGKYVYIAELLAHKIHVYEKH  251 (355)
T ss_dssp             EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             cCCcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence            1122346799999998877765 46788888875

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=94.30  E-value=0.38  Score=27.48  Aligned_cols=101  Identities=14%  Similarity=0.193  Sum_probs=51.9

Q ss_pred             CCCEEEEEcCC-----CcEEEEEcCCCCCcEE--EeeccCCeeEEEEccCCCEEEEeeCC-----CcEEEeeCCCCCceE
Q 045566            9 DGTTVFSGGCD-----KQVKMWPLLSGGQPVT--VAMHDAPIKEVAWIPEMNLLATGSWD-----KTLKYWDTRQPNPVH   76 (112)
Q Consensus         9 ~~~~l~~~~~~-----~~v~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~i~~w~~~~~~~~~   76 (112)
                      +++.++.|+.+     ..+..||+.+.+-...  ++........+.+  ++..++.|+.+     ..+.+||+.+.+...
T Consensus       159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  236 (301)
T 2vpj_A          159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT  236 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEE
Confidence            45566666543     4577888765432111  1111111122222  56677777653     468889987765332


Q ss_pred             EecCCC---eEEEEeeCCCEEEEEeCC-----CcEEEEECcCC
Q 045566           77 TQQLPD---RCYALTVRYPLMVVGTAD-----RNLVVFNLQNP  111 (112)
Q Consensus        77 ~~~~~~---~~~~~~~~~~~~~~~~~d-----~~v~~~d~~~~  111 (112)
                      .-..+.   ...+...++..++.|+.+     ..+.+||+++.
T Consensus       237 ~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          237 VTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             ECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             CCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence            222111   112223366667777655     34778887654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=93.71  E-value=0.75  Score=28.85  Aligned_cols=87  Identities=13%  Similarity=0.203  Sum_probs=57.1

Q ss_pred             CCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCCeEEEEee-CCCEEEE
Q 045566           18 CDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTV-RYPLMVV   96 (112)
Q Consensus        18 ~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   96 (112)
                      ++.+|-+-|+..+..+...+..   --+.-++|..+.++.-. .+.+.++|+++.+.+..+..+....-|.+ +.+.++.
T Consensus        46 ~~~~vvIiDl~~~~~~~rrpi~---AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~l  121 (494)
T 1bpo_A           46 EQAQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVAL  121 (494)
T ss_dssp             TCCEEEEEETTSTTSCEEEECC---CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEE
T ss_pred             CCCeEEEEECCCCCcceecccc---cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEE
Confidence            3447888998877665433211   12455788777666554 78899999999999988876655545544 3344444


Q ss_pred             EeCCCcEEEEECc
Q 045566           97 GTADRNLVVFNLQ  109 (112)
Q Consensus        97 ~~~d~~v~~~d~~  109 (112)
                      .+ +..|+.|++.
T Consensus       122 VT-~taVyHWsi~  133 (494)
T 1bpo_A          122 VT-DNAVYHWSME  133 (494)
T ss_dssp             EC-SSEEEEEESS
T ss_pred             Ec-CCeeEEeccc
Confidence            43 4578888875

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.67  E-value=0.73  Score=28.54  Aligned_cols=98  Identities=8%  Similarity=0.088  Sum_probs=54.4

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcE--EEee------ccCCeeEEEEccC----CCEEEEeeC---------
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV--TVAM------HDAPIKEVAWIPE----MNLLATGSW---------   60 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~--~~~~------~~~~v~~~~~~~~----~~~~~~~~~---------   60 (112)
                      ..++|.|+|+++++-...+.|++++...++...  .+..      .+.....++|+|+    +.+.++-..         
T Consensus        30 ~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~  109 (454)
T 1cru_A           30 HALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKE  109 (454)
T ss_dssp             EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CC
T ss_pred             eEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCccc
Confidence            368999999987776554578887754443211  1211      2456679999994    444444332         


Q ss_pred             ---CCcEEEeeCCCC-------CceE-EecC----CCeEEEEeeCCCEEEEEeC
Q 045566           61 ---DKTLKYWDTRQP-------NPVH-TQQL----PDRCYALTVRYPLMVVGTA   99 (112)
Q Consensus        61 ---~~~i~~w~~~~~-------~~~~-~~~~----~~~~~~~~~~~~~~~~~~~   99 (112)
                         ...|.-++....       +.+. .+..    ....+.|.+++.+.++.+.
T Consensus       110 ~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          110 LPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             SCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             cccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence               123444444321       1111 1211    2357889999986666543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=93.56  E-value=0.65  Score=27.64  Aligned_cols=94  Identities=10%  Similarity=-0.005  Sum_probs=53.4

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCC-CcEEEe---eccCCeeEEEEccC----CCEEEEeeC---C----CcEEE
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGG-QPVTVA---MHDAPIKEVAWIPE----MNLLATGSW---D----KTLKY   66 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~-~~~~~~---~~~~~v~~~~~~~~----~~~~~~~~~---~----~~i~~   66 (112)
                      ..++|.|+|+++++ ..++.|++++ ..++ ....+.   ........++++|+    +.++++-..   +    ..|..
T Consensus        32 ~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r  109 (354)
T 3a9g_A           32 WSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIR  109 (354)
T ss_dssp             EEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEE
T ss_pred             eEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEE
Confidence            36889999985554 4558898887 3343 111111   12356789999997    444444332   2    45666


Q ss_pred             eeCCCC--C-----ce-EEecC----CCeEEEEeeCCCEEEEE
Q 045566           67 WDTRQP--N-----PV-HTQQL----PDRCYALTVRYPLMVVG   97 (112)
Q Consensus        67 w~~~~~--~-----~~-~~~~~----~~~~~~~~~~~~~~~~~   97 (112)
                      ++....  .     .+ ..+..    ....+.|.|++.++++.
T Consensus       110 ~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~  152 (354)
T 3a9g_A          110 GRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITT  152 (354)
T ss_dssp             EEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEEC
T ss_pred             EEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEE
Confidence            666543  1     11 11211    23568899999765553

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=93.32  E-value=1  Score=29.21  Aligned_cols=69  Identities=12%  Similarity=0.007  Sum_probs=47.2

Q ss_pred             eEEEcCCCCEEEEE-cCCCcEEEEEcCCC------CC-----c-EEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeC
Q 045566            3 CSTWKDDGTTVFSG-GCDKQVKMWPLLSG------GQ-----P-VTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT   69 (112)
Q Consensus         3 ~~~~~~~~~~l~~~-~~~~~v~~~~~~~~------~~-----~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~   69 (112)
                      .+..+|+|++++.+ -.+.++.++++...      +.     . .....-.-.-...+|.++|....+..-|..|.-|++
T Consensus       327 Gv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni  406 (638)
T 3sbq_A          327 GCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVKWNM  406 (638)
T ss_dssp             CEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEH
T ss_pred             ceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEEEec
Confidence            57789999988665 56889999998631      11     0 111112234467889999966666668999999998


Q ss_pred             CC
Q 045566           70 RQ   71 (112)
Q Consensus        70 ~~   71 (112)
                      ..
T Consensus       407 ~~  408 (638)
T 3sbq_A          407 EE  408 (638)
T ss_dssp             HH
T ss_pred             cH
Confidence            54

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=93.17  E-value=0.66  Score=26.58  Aligned_cols=101  Identities=13%  Similarity=0.157  Sum_probs=51.0

Q ss_pred             CCCEEEEEcCC----CcEEEEEcCCCCCcEE--EeeccCCeeEEEEccCCCEEEEeeCC------CcEEEeeCCCCCceE
Q 045566            9 DGTTVFSGGCD----KQVKMWPLLSGGQPVT--VAMHDAPIKEVAWIPEMNLLATGSWD------KTLKYWDTRQPNPVH   76 (112)
Q Consensus         9 ~~~~l~~~~~~----~~v~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~------~~i~~w~~~~~~~~~   76 (112)
                      ++..++.|+.+    ..+.+||+.+.+-...  ++........+.+  ++..++.|+.+      ..+.+||+.+.+...
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~  132 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT  132 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence            45566666644    5677888765432111  1111111122222  56677777654      458888987765332


Q ss_pred             EecCCC---eEEEEeeCCCEEEEEeC---------CCcEEEEECcCC
Q 045566           77 TQQLPD---RCYALTVRYPLMVVGTA---------DRNLVVFNLQNP  111 (112)
Q Consensus        77 ~~~~~~---~~~~~~~~~~~~~~~~~---------d~~v~~~d~~~~  111 (112)
                      .-..+.   .......++..++.|+.         ...+.+||+.+.
T Consensus       133 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~  179 (306)
T 3ii7_A          133 KPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATE  179 (306)
T ss_dssp             ECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred             CCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence            221111   11122335666666653         344778887654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=93.11  E-value=0.74  Score=26.96  Aligned_cols=107  Identities=6%  Similarity=-0.128  Sum_probs=58.0

Q ss_pred             eEEEcCCCCEEEEEc--CCCcEEEEEcCCCCCcEEE-eeccCCeeEEEEccCCC-EEEEeeCCCcEEEeeCCCCCceEEe
Q 045566            3 CSTWKDDGTTVFSGG--CDKQVKMWPLLSGGQPVTV-AMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDTRQPNPVHTQ   78 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~--~~~~v~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~-~~~~~~~~~~i~~w~~~~~~~~~~~   78 (112)
                      .++++|.+..|+...  ..+.|...++.. .....+ ...-..-..+++++++. ++++=...+.|..+++.........
T Consensus       126 giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~  204 (318)
T 3sov_A          126 AIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV  204 (318)
T ss_dssp             EEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred             EEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEe
Confidence            567777555554443  356777777653 322222 22233457899998554 4455556778999998654332222


Q ss_pred             cC---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           79 QL---PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        79 ~~---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      ..   ....+++. .+..+.+-...+.|..+|..++
T Consensus       205 ~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G  239 (318)
T 3sov_A          205 KGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTG  239 (318)
T ss_dssp             CSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred             cCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCC
Confidence            21   11234442 2333444444567777776554

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=92.66  E-value=0.83  Score=26.36  Aligned_cols=101  Identities=6%  Similarity=0.055  Sum_probs=50.2

Q ss_pred             CCCEEEEEcC------CCcEEEEEcCCCCCc--EEEeeccCCeeEEEEccCCCEEEEeeCCC-----cEEEeeCCCCCce
Q 045566            9 DGTTVFSGGC------DKQVKMWPLLSGGQP--VTVAMHDAPIKEVAWIPEMNLLATGSWDK-----TLKYWDTRQPNPV   75 (112)
Q Consensus         9 ~~~~l~~~~~------~~~v~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-----~i~~w~~~~~~~~   75 (112)
                      +++.++.|+.      -..+.+||+.+.+-.  ..++........+.+  ++..++.|+.++     .+..||+.+.+-.
T Consensus       148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  225 (315)
T 4asc_A          148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWA  225 (315)
T ss_dssp             TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEE
T ss_pred             CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEE
Confidence            4556666655      135778887654211  111111111122222  566777776543     4778888776433


Q ss_pred             EEecCCC---eEEEEeeCCCEEEEEeCCC--------------cEEEEECcCC
Q 045566           76 HTQQLPD---RCYALTVRYPLMVVGTADR--------------NLVVFNLQNP  111 (112)
Q Consensus        76 ~~~~~~~---~~~~~~~~~~~~~~~~~d~--------------~v~~~d~~~~  111 (112)
                      ..-..+.   ...+...++..++.|+.++              .+.+||+++.
T Consensus       226 ~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~  278 (315)
T 4asc_A          226 PFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK  278 (315)
T ss_dssp             EECCCSSCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred             ECCCCCCcccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence            2221111   1122234666777776532              3667887654

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=92.62  E-value=0.22  Score=33.80  Aligned_cols=35  Identities=11%  Similarity=0.060  Sum_probs=28.3

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEE
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTV   36 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~   36 (112)
                      .+++..++..++++-+.|+++++|++.+++.+.+.
T Consensus       239 ~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          239 ISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             EEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             EEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            35666778889999999999999999888765543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=92.25  E-value=0.95  Score=26.10  Aligned_cols=61  Identities=8%  Similarity=0.021  Sum_probs=34.1

Q ss_pred             CCCEEEEeeC------CCcEEEeeCCCCCceEEecCC--C-eEEEEeeCCCEEEEEeCCC-----cEEEEECcCC
Q 045566           51 EMNLLATGSW------DKTLKYWDTRQPNPVHTQQLP--D-RCYALTVRYPLMVVGTADR-----NLVVFNLQNP  111 (112)
Q Consensus        51 ~~~~~~~~~~------~~~i~~w~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~d~-----~v~~~d~~~~  111 (112)
                      ++..++.|+.      -..+..||+.+.+-......+  . ...+...++..++.|+.++     .+.+||+.+.
T Consensus       148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~  222 (315)
T 4asc_A          148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDN  222 (315)
T ss_dssp             TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred             CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCC
Confidence            5666777765      245888888766432211111  1 1122234667777777654     4777887654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=92.11  E-value=1.2  Score=26.75  Aligned_cols=97  Identities=11%  Similarity=-0.015  Sum_probs=56.3

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcE--EE----eeccCCeeEEEEccC----CCEEEEee--CCCcEEEeeC
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV--TV----AMHDAPIKEVAWIPE----MNLLATGS--WDKTLKYWDT   69 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~--~~----~~~~~~v~~~~~~~~----~~~~~~~~--~~~~i~~w~~   69 (112)
                      ..++|.|+|+.+++--..+.|++++...++...  .+    .........++++|+    +.+.++-+  .+..|.-+.+
T Consensus        35 ~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~  114 (347)
T 3das_A           35 WGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLY  114 (347)
T ss_dssp             EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEB
T ss_pred             eEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEe
Confidence            368999999988777668999988755443211  11    123456789999985    44444322  3344544554


Q ss_pred             CCC----------Cce-EEecC----CCeEEEEeeCCCEEEEEe
Q 045566           70 RQP----------NPV-HTQQL----PDRCYALTVRYPLMVVGT   98 (112)
Q Consensus        70 ~~~----------~~~-~~~~~----~~~~~~~~~~~~~~~~~~   98 (112)
                      ...          +.+ ..+..    ....+.|.+++.++++.+
T Consensus       115 ~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A          115 DEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             CTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred             CCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence            431          111 11211    224688999987666644

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=92.06  E-value=0.49  Score=32.16  Aligned_cols=37  Identities=27%  Similarity=0.255  Sum_probs=30.8

Q ss_pred             CeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566           42 PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ   78 (112)
Q Consensus        42 ~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~   78 (112)
                      .+.++...++..++++-+.|+.+++|++.+++++...
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            4567777778889999999999999999998876554

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=91.92  E-value=0.23  Score=34.29  Aligned_cols=34  Identities=12%  Similarity=0.034  Sum_probs=27.5

Q ss_pred             eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEE
Q 045566            3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTV   36 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~   36 (112)
                      +++..++..++++-+.|+++++|++.+++.+.+.
T Consensus       242 s~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~  275 (1139)
T 4fhn_B          242 SMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  275 (1139)
T ss_dssp             CCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred             EeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence            4455667889999999999999999888766543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=91.66  E-value=2.1  Score=28.72  Aligned_cols=110  Identities=9%  Similarity=-0.132  Sum_probs=60.1

Q ss_pred             eeEEEcCCCCEEEEEc-C-CCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCC-EEEEeeCCCcEEEeeCCCCCceEEe
Q 045566            2 LCSTWKDDGTTVFSGG-C-DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDTRQPNPVHTQ   78 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~-~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~i~~w~~~~~~~~~~~   78 (112)
                      ..++++|.+..|+... . .+.|...++........+.........|++++... ++++=...+.|...++.........
T Consensus       517 ~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~  596 (791)
T 3m0c_C          517 RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL  596 (791)
T ss_dssp             EEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred             ceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEe
Confidence            3578888655554443 2 36777777653333223333334568899997544 4444445677888888655433332


Q ss_pred             cC---CCeEEEEeeCCCEEEEEe-CCCcEEEEECcCC
Q 045566           79 QL---PDRCYALTVRYPLMVVGT-ADRNLVVFNLQNP  111 (112)
Q Consensus        79 ~~---~~~~~~~~~~~~~~~~~~-~d~~v~~~d~~~~  111 (112)
                      ..   -...+.+...+..|+... ..+.|...|..++
T Consensus       597 ~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG  633 (791)
T 3m0c_C          597 EDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG  633 (791)
T ss_dssp             ECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             cCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCC
Confidence            21   112334444444555554 3456666665443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=91.60  E-value=1.2  Score=25.69  Aligned_cols=101  Identities=11%  Similarity=0.150  Sum_probs=50.0

Q ss_pred             CCCEEEEEcCC-----CcEEEEEcCCCCCcE--EEeeccCCeeEEEEccCCCEEEEeeCC-----CcEEEeeCCCCCceE
Q 045566            9 DGTTVFSGGCD-----KQVKMWPLLSGGQPV--TVAMHDAPIKEVAWIPEMNLLATGSWD-----KTLKYWDTRQPNPVH   76 (112)
Q Consensus         9 ~~~~l~~~~~~-----~~v~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~i~~w~~~~~~~~~   76 (112)
                      +++.++.|+.+     ..+.+||+.+.+-..  .++........+.+  ++..++.|+.+     ..+..||+.+.+-..
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  198 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRM  198 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEee
Confidence            45556666533     357778876443111  11111111122222  56677776654     458888887654322


Q ss_pred             EecCC--C-eEEEEeeCCCEEEEEeCC-----CcEEEEECcCC
Q 045566           77 TQQLP--D-RCYALTVRYPLMVVGTAD-----RNLVVFNLQNP  111 (112)
Q Consensus        77 ~~~~~--~-~~~~~~~~~~~~~~~~~d-----~~v~~~d~~~~  111 (112)
                      .-..+  . ...+...++.+++.|+.+     ..+.+||+.+.
T Consensus       199 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~  241 (308)
T 1zgk_A          199 ITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETE  241 (308)
T ss_dssp             CCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCC
Confidence            11111  1 111222366666777654     45888887764

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=91.50  E-value=1.3  Score=26.27  Aligned_cols=95  Identities=12%  Similarity=0.071  Sum_probs=51.3

Q ss_pred             eeEEEcCCCC-EEEEEcCCCcEEEEEcCCC--CCcEEE----eeccCCeeEEEEccC----CCEEEEeeC-------CCc
Q 045566            2 LCSTWKDDGT-TVFSGGCDKQVKMWPLLSG--GQPVTV----AMHDAPIKEVAWIPE----MNLLATGSW-------DKT   63 (112)
Q Consensus         2 ~~~~~~~~~~-~l~~~~~~~~v~~~~~~~~--~~~~~~----~~~~~~v~~~~~~~~----~~~~~~~~~-------~~~   63 (112)
                      ..++|.|+|+ .++ +...+.|++++....  +....+    .........++++|+    +.+.++-..       ...
T Consensus        21 ~~i~~~pdG~~l~V-~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~   99 (353)
T 2g8s_A           21 WALAFLPDNHGMLI-TLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTA   99 (353)
T ss_dssp             EEEEECSTTCCEEE-EETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEE
T ss_pred             EEEEEcCCCCEEEE-EeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeE
Confidence            4689999998 554 455789998874321  111111    112345689999995    544444322       224


Q ss_pred             EEEeeCCCCC-------ceE-Eec------CCCeEEEEeeCCCEEEEE
Q 045566           64 LKYWDTRQPN-------PVH-TQQ------LPDRCYALTVRYPLMVVG   97 (112)
Q Consensus        64 i~~w~~~~~~-------~~~-~~~------~~~~~~~~~~~~~~~~~~   97 (112)
                      |.-+++....       .+. ...      .....+.|.|++.++++.
T Consensus       100 v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~  147 (353)
T 2g8s_A          100 VGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIAL  147 (353)
T ss_dssp             EEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEE
T ss_pred             EEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEE
Confidence            5555554321       111 111      112468999999555544

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=91.42  E-value=1.2  Score=25.44  Aligned_cols=101  Identities=13%  Similarity=0.176  Sum_probs=51.7

Q ss_pred             CCCEEEEEcCC-----CcEEEEEcCCCCCcE--EEeeccCCeeEEEEccCCCEEEEeeCC-----CcEEEeeCCCCCceE
Q 045566            9 DGTTVFSGGCD-----KQVKMWPLLSGGQPV--TVAMHDAPIKEVAWIPEMNLLATGSWD-----KTLKYWDTRQPNPVH   76 (112)
Q Consensus         9 ~~~~l~~~~~~-----~~v~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~i~~w~~~~~~~~~   76 (112)
                      +++.++.|+.+     ..+.+||+.+.+-..  ..+........+.+  ++..++.|+.+     ..+..||+.+.+-..
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  189 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTN  189 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence            45566666543     357788876543211  11111111122222  56677777654     458888887765332


Q ss_pred             EecCCC---eEEEEeeCCCEEEEEeCC-----CcEEEEECcCC
Q 045566           77 TQQLPD---RCYALTVRYPLMVVGTAD-----RNLVVFNLQNP  111 (112)
Q Consensus        77 ~~~~~~---~~~~~~~~~~~~~~~~~d-----~~v~~~d~~~~  111 (112)
                      .-..+.   ...+...++..++.|+.+     ..+.+||+++.
T Consensus       190 ~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  232 (301)
T 2vpj_A          190 VTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTD  232 (301)
T ss_dssp             ECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCC
Confidence            211111   112223356666777654     45888888764

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=91.39  E-value=1.4  Score=26.42  Aligned_cols=96  Identities=6%  Similarity=-0.089  Sum_probs=55.5

Q ss_pred             eeEEEcCCCCEEEEEcC-----------------CCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEe-eCCCc
Q 045566            2 LCSTWKDDGTTVFSGGC-----------------DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATG-SWDKT   63 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~-----------------~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~   63 (112)
                      +.+.+.++|++.++...                 .+.|..++.  + ....+...-..-+.++|+|+++.+..+ +..+.
T Consensus       168 ND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~-~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~  244 (355)
T 3sre_A          168 NDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--N-DVRVVAEGFDFANGINISPDGKYVYIAELLAHK  244 (355)
T ss_dssp             EEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--T-CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTE
T ss_pred             ceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--C-eEEEeecCCcccCcceECCCCCEEEEEeCCCCe
Confidence            45677788887766541                 234444443  3 233333334456899999999876555 45788


Q ss_pred             EEEeeCCCCCce---EEecCC--CeEEEEee-CCCEEEEEeCC
Q 045566           64 LKYWDTRQPNPV---HTQQLP--DRCYALTV-RYPLMVVGTAD  100 (112)
Q Consensus        64 i~~w~~~~~~~~---~~~~~~--~~~~~~~~-~~~~~~~~~~d  100 (112)
                      |..|++.....+   ..+..+  ...++++. +|++.+++..+
T Consensus       245 I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~~  287 (355)
T 3sre_A          245 IHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPN  287 (355)
T ss_dssp             EEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESC
T ss_pred             EEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEecCC
Confidence            999998643222   122222  24567777 47766655433

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=90.93  E-value=1.3  Score=25.24  Aligned_cols=101  Identities=16%  Similarity=0.190  Sum_probs=49.4

Q ss_pred             CCCEEEEEcCCC-----cEEEEEcCCCCCcEE--EeeccCCeeEEEEccCCCEEEEeeCC-------CcEEEeeCCCCCc
Q 045566            9 DGTTVFSGGCDK-----QVKMWPLLSGGQPVT--VAMHDAPIKEVAWIPEMNLLATGSWD-------KTLKYWDTRQPNP   74 (112)
Q Consensus         9 ~~~~l~~~~~~~-----~v~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~-------~~i~~w~~~~~~~   74 (112)
                      ++..++.|+.++     .+.+||+.+.+-...  ++........+.+  ++..++.|+.+       ..+..||+.+.+-
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W  185 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEW  185 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence            455566665442     466777654432111  1111111112222  56666666542       3578888877643


Q ss_pred             eEEecCC--C-eEEEEeeCCCEEEEEeCC-----CcEEEEECcCC
Q 045566           75 VHTQQLP--D-RCYALTVRYPLMVVGTAD-----RNLVVFNLQNP  111 (112)
Q Consensus        75 ~~~~~~~--~-~~~~~~~~~~~~~~~~~d-----~~v~~~d~~~~  111 (112)
                      ...-..+  . .......++.+++.|+.+     ..+.+||+.+.
T Consensus       186 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~  230 (302)
T 2xn4_A          186 TYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTN  230 (302)
T ss_dssp             EEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred             EECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCC
Confidence            3221111  1 112223356667777654     35888887754

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=90.46  E-value=2.2  Score=26.91  Aligned_cols=71  Identities=10%  Similarity=-0.061  Sum_probs=52.6

Q ss_pred             eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC
Q 045566            3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN   73 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~   73 (112)
                      ++..++....+..-..-|.+++||+.++..+..-+-....|...+......-++....+|.|.--.+....
T Consensus       263 amqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~  333 (494)
T 1bpo_A          263 AMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN  333 (494)
T ss_dssp             EEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred             EEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence            46667777777778888999999999999987766666677666666555566667788887776665544

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=90.26  E-value=1.6  Score=25.07  Aligned_cols=101  Identities=10%  Similarity=0.116  Sum_probs=51.0

Q ss_pred             CCCEEEEEcCC-----CcEEEEEcCCCCCc--EEEeeccCCeeEEEEccCCCEEEEeeCC-----CcEEEeeCCCCCceE
Q 045566            9 DGTTVFSGGCD-----KQVKMWPLLSGGQP--VTVAMHDAPIKEVAWIPEMNLLATGSWD-----KTLKYWDTRQPNPVH   76 (112)
Q Consensus         9 ~~~~l~~~~~~-----~~v~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~i~~w~~~~~~~~~   76 (112)
                      +++.++.|+.+     ..+..||+.+.+-.  ..++........+.+  ++..++.|+.+     ..+.+||+.+.+...
T Consensus       168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~  245 (308)
T 1zgk_A          168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTF  245 (308)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEE
Confidence            45566666543     45778887544211  111111111122222  56677777654     568889987764332


Q ss_pred             EecCCC---eEEEEeeCCCEEEEEeCC-----CcEEEEECcCC
Q 045566           77 TQQLPD---RCYALTVRYPLMVVGTAD-----RNLVVFNLQNP  111 (112)
Q Consensus        77 ~~~~~~---~~~~~~~~~~~~~~~~~d-----~~v~~~d~~~~  111 (112)
                      .-..+.   .......++.+++.|+.+     ..+.+||+.+.
T Consensus       246 ~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          246 VAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             CCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             CCCCCCCccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence            211111   111222356667777654     34778887754

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=90.14  E-value=2.6  Score=27.34  Aligned_cols=107  Identities=8%  Similarity=-0.106  Sum_probs=62.0

Q ss_pred             eeEEEcCCCCEE-EEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccC-CCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566            2 LCSTWKDDGTTV-FSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPE-MNLLATGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         2 ~~~~~~~~~~~l-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      ..++|++.+..+ ++-..++.|..+++........+.........+++.+. +.++++-...+.|.+.++..........
T Consensus        40 ~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~  119 (628)
T 4a0p_A           40 SALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVW  119 (628)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEEC
T ss_pred             EEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEe
Confidence            367888855544 45556788888887644332233322234578888874 4555665667889999886544322221


Q ss_pred             C---CCeEEEEeeCCCEEEEEeC--CCcEEEEEC
Q 045566           80 L---PDRCYALTVRYPLMVVGTA--DRNLVVFNL  108 (112)
Q Consensus        80 ~---~~~~~~~~~~~~~~~~~~~--d~~v~~~d~  108 (112)
                      .   ....++++|....++....  .+.|...++
T Consensus       120 ~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~  153 (628)
T 4a0p_A          120 KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAM  153 (628)
T ss_dssp             SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeC
Confidence            1   2356788875555555542  345555544

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=90.07  E-value=1.7  Score=25.07  Aligned_cols=61  Identities=7%  Similarity=0.113  Sum_probs=33.3

Q ss_pred             CCCEEEEeeC------CCcEEEeeCCCCCceEEecCCC---eEEEEeeCCCEEEEEeCC-----CcEEEEECcCC
Q 045566           51 EMNLLATGSW------DKTLKYWDTRQPNPVHTQQLPD---RCYALTVRYPLMVVGTAD-----RNLVVFNLQNP  111 (112)
Q Consensus        51 ~~~~~~~~~~------~~~i~~w~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d-----~~v~~~d~~~~  111 (112)
                      ++..++.|+.      ...+..+|+.+.+-...-..+.   ...+...++..++.|+.+     ..+.+||+.+.
T Consensus       158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~  232 (318)
T 2woz_A          158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTN  232 (318)
T ss_dssp             TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred             CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCC
Confidence            5666666653      2458888987765332211111   112223466667777653     24667887664

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=89.51  E-value=2  Score=25.10  Aligned_cols=65  Identities=9%  Similarity=0.064  Sum_probs=36.9

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEE-eeccCCeeEEEEccCCCEEEEeeCCCcEEEee
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTV-AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD   68 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~   68 (112)
                      ..+.+.+++..++.+......+-.|. .++.-..+ ......+..+.+.+++..++. +.++.++..+
T Consensus       166 ~~~~~~~~~~~~~~g~~G~~~~S~d~-gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~  231 (327)
T 2xbg_A          166 RNLNRSPSGEYVAVSSRGSFYSTWEP-GQTAWEPHNRTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSD  231 (327)
T ss_dssp             EEEEECTTSCEEEEETTSSEEEEECT-TCSSCEEEECCSSSCEEEEEECTTSCEEEE-ETTTEEEEEE
T ss_pred             EEEEEcCCCcEEEEECCCcEEEEeCC-CCCceeECCCCCCCccceeEECCCCCEEEE-eCCceEEEec
Confidence            45678888887776654333333331 12222222 223456788888888876654 4567666653

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=89.43  E-value=0.5  Score=32.75  Aligned_cols=37  Identities=27%  Similarity=0.255  Sum_probs=29.1

Q ss_pred             CeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566           42 PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ   78 (112)
Q Consensus        42 ~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~   78 (112)
                      .+.+++..++..++++-+.|+.+++|++.+++++...
T Consensus       239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~  275 (1139)
T 4fhn_B          239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  275 (1139)
T ss_dssp             CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred             eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence            3445556667789999999999999999988766553

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=89.36  E-value=1.9  Score=24.47  Aligned_cols=95  Identities=8%  Similarity=-0.108  Sum_probs=55.6

Q ss_pred             CCCEEEEEcCCCcEEEEEcCCCCC-----cEEEeec--cCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCce------
Q 045566            9 DGTTVFSGGCDKQVKMWPLLSGGQ-----PVTVAMH--DAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV------   75 (112)
Q Consensus         9 ~~~~l~~~~~~~~v~~~~~~~~~~-----~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~------   75 (112)
                      ....|+...+| +++.=..+....     ..+..+.  =..+..++|+|++.+.+.  .++.+.-.+..+....      
T Consensus         3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~   79 (236)
T 1tl2_A            3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA   79 (236)
T ss_dssp             CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred             cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence            34556666777 665555444431     1122222  247789999999987766  6676666665442211      


Q ss_pred             EEe-cCC---CeEEEEeeCCCEEEEEeCCCcEEEEEC
Q 045566           76 HTQ-QLP---DRCYALTVRYPLMVVGTADRNLVVFNL  108 (112)
Q Consensus        76 ~~~-~~~---~~~~~~~~~~~~~~~~~~d~~v~~~d~  108 (112)
                      ..+ ...   -..+.|++++.+.++  .||.|+-++-
T Consensus        80 t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           80 KKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASP  114 (236)
T ss_dssp             EEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred             cEecccccccceEEEECCCCCEEEe--CCCEEEEeCC
Confidence            111 001   257788999987776  5688876653

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=89.21  E-value=3.2  Score=26.94  Aligned_cols=56  Identities=13%  Similarity=0.112  Sum_probs=35.8

Q ss_pred             eEEEcCCCCEEEEEcCC------------CcEEEEEcCCCCCcEEEee-ccCCeeEEEEccCCCEEEEe
Q 045566            3 CSTWKDDGTTVFSGGCD------------KQVKMWPLLSGGQPVTVAM-HDAPIKEVAWIPEMNLLATG   58 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~~------------~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~   58 (112)
                      .++|+|.|++++.-..+            ..+.+.+..+++..+.+.. ..+.++.+.|+|+++.|+..
T Consensus       480 NL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          480 GLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             EEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             ceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence            47899999977665432            2345555555554433332 45789999999998876543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=88.96  E-value=2.3  Score=24.90  Aligned_cols=101  Identities=6%  Similarity=-0.073  Sum_probs=53.0

Q ss_pred             eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe----eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566            3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA----MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ   78 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~   78 (112)
                      .+.+.++++.++. +.++.+.+.+...++.-..+.    .....+..+.+.+++..++.+. ++.+. +....++.-...
T Consensus       209 ~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~-~S~DgG~tW~~~  285 (327)
T 2xbg_A          209 NMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGALL-CSQDGGQTWQQD  285 (327)
T ss_dssp             EEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCEE-EESSTTSSCEEC
T ss_pred             eeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeEE-EeCCCCcccEEc
Confidence            4566777766544 446766665311111111111    1123578888988777666554 66553 333333322212


Q ss_pred             ------cCCCeEEEEeeCCCEEEEEeCCCcEEEEE
Q 045566           79 ------QLPDRCYALTVRYPLMVVGTADRNLVVFN  107 (112)
Q Consensus        79 ------~~~~~~~~~~~~~~~~~~~~~d~~v~~~d  107 (112)
                            ......+.+..+ ..+++++.+|.|.-++
T Consensus       286 ~~~~~~~~~~~~v~~~~~-~~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          286 VDVKKVPSNFYKILFFSP-DQGFILGQKGILLRYV  319 (327)
T ss_dssp             GGGTTSSSCCCEEEEEET-TEEEEECSTTEEEEEC
T ss_pred             CccCCCCCCeEEEEEECC-CceEEEcCCceEEEEc
Confidence                  123455666544 4567777888776654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=88.75  E-value=2.2  Score=24.43  Aligned_cols=99  Identities=7%  Similarity=-0.023  Sum_probs=51.1

Q ss_pred             CEEEEEcC--CCcEEEEEcCCCCCc--EEEeeccCCeeEEEEccCCCEEEEeeCC----CcEEEeeCCCCCceEEecCCC
Q 045566           11 TTVFSGGC--DKQVKMWPLLSGGQP--VTVAMHDAPIKEVAWIPEMNLLATGSWD----KTLKYWDTRQPNPVHTQQLPD   82 (112)
Q Consensus        11 ~~l~~~~~--~~~v~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~i~~w~~~~~~~~~~~~~~~   82 (112)
                      ..++.|+.  ...+..||..+.+-.  ..++........+.  .++..++.|+.+    ..+..+|+.+.+.......+.
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~   90 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT   90 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence            35556654  356888887654321  11111111212222  256677777654    567888887765333222211


Q ss_pred             ---eEEEEeeCCCEEEEEeCC------CcEEEEECcCC
Q 045566           83 ---RCYALTVRYPLMVVGTAD------RNLVVFNLQNP  111 (112)
Q Consensus        83 ---~~~~~~~~~~~~~~~~~d------~~v~~~d~~~~  111 (112)
                         .......++..++.|+.+      ..+.+||+.+.
T Consensus        91 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~  128 (306)
T 3ii7_A           91 PRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTE  128 (306)
T ss_dssp             CCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTT
T ss_pred             cccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCC
Confidence               112223356666777654      45788887654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=88.69  E-value=4.3  Score=29.68  Aligned_cols=86  Identities=12%  Similarity=0.185  Sum_probs=55.2

Q ss_pred             CCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCCeEEEEeeC-CCEEEEE
Q 045566           19 DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTVR-YPLMVVG   97 (112)
Q Consensus        19 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   97 (112)
                      ..+|.+-|+..+..+...+.   .--+..++|..+.++.- ..+.+.++++.+...+..+..+....-|.|- .+.++..
T Consensus        47 ~~~vvIidl~~~~~~~rrpi---~AdsAIMnP~~~iiALr-ag~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lV  122 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALK-AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALV  122 (1630)
T ss_pred             CceEEEEECCCCCCcccccc---cchhhccCCCcceEEEe-cCCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEE
Confidence            34788888877665432211   11234467877666554 3788999999999888888776666666653 3333333


Q ss_pred             eCCCcEEEEECc
Q 045566           98 TADRNLVVFNLQ  109 (112)
Q Consensus        98 ~~d~~v~~~d~~  109 (112)
                       .+..|+.|++.
T Consensus       123 -T~~aVyHW~~~  133 (1630)
T 1xi4_A          123 -TDNAVYHWSME  133 (1630)
T ss_pred             -cCCeEEEeccC
Confidence             35579999884

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=88.61  E-value=2.3  Score=24.55  Aligned_cols=101  Identities=10%  Similarity=0.145  Sum_probs=49.7

Q ss_pred             CCCEEEEEcC------CCcEEEEEcCCCCCcEE--EeeccCCeeEEEEccCCCEEEEeeCC-----CcEEEeeCCCCCce
Q 045566            9 DGTTVFSGGC------DKQVKMWPLLSGGQPVT--VAMHDAPIKEVAWIPEMNLLATGSWD-----KTLKYWDTRQPNPV   75 (112)
Q Consensus         9 ~~~~l~~~~~------~~~v~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~i~~w~~~~~~~~   75 (112)
                      +++.++.|+.      ...+.+||+.+.+-...  .+........+.+  ++..++.|+.+     ..+.+||+.+.+-.
T Consensus       158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  235 (318)
T 2woz_A          158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWE  235 (318)
T ss_dssp             TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred             CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEE
Confidence            4555566653      23578888765432111  1111111122222  56666666543     34667888776533


Q ss_pred             EEecCCC---eEEEEeeCCCEEEEEeCC--------------CcEEEEECcCC
Q 045566           76 HTQQLPD---RCYALTVRYPLMVVGTAD--------------RNLVVFNLQNP  111 (112)
Q Consensus        76 ~~~~~~~---~~~~~~~~~~~~~~~~~d--------------~~v~~~d~~~~  111 (112)
                      ..-..+.   .......++..++.|+.+              ..+.+||+.+.
T Consensus       236 ~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~  288 (318)
T 2woz_A          236 VMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK  288 (318)
T ss_dssp             ECCCCSSCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred             ECCCCCCcccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence            2211111   112223456666666653              35778888764

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=88.20  E-value=0.77  Score=30.41  Aligned_cols=27  Identities=15%  Similarity=0.186  Sum_probs=22.8

Q ss_pred             EEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           86 ALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        86 ~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      +...+..++++-+.|.++++||+++++
T Consensus       226 ~~~~~~~fLftL~~Dh~LRiWsL~t~~  252 (729)
T 3f7f_A          226 CKLFHERYLIVLTQNCHLKIWDLTSFT  252 (729)
T ss_dssp             EEEETTTEEEEEETTCEEEEEETTTTE
T ss_pred             EeccCCcEEEEEEcCCeEEEEEcCCCc
Confidence            335667899999999999999999863

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=87.78  E-value=1.7  Score=28.89  Aligned_cols=35  Identities=17%  Similarity=0.185  Sum_probs=27.2

Q ss_pred             eeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566           43 IKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus        43 v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      |.++.+  +..++++-+.|+.+++|++++++.+....
T Consensus       224 Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~D  258 (729)
T 3f7f_A          224 ISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYD  258 (729)
T ss_dssp             EEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             EEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence            444444  46799999999999999999988665543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=86.37  E-value=4.4  Score=25.34  Aligned_cols=50  Identities=14%  Similarity=0.175  Sum_probs=31.7

Q ss_pred             eeEEEcCCCC-EEEEEcCCCcEEEEEcCCC---CCcEEEe---------eccCCeeEEEEccC
Q 045566            2 LCSTWKDDGT-TVFSGGCDKQVKMWPLLSG---GQPVTVA---------MHDAPIKEVAWIPE   51 (112)
Q Consensus         2 ~~~~~~~~~~-~l~~~~~~~~v~~~~~~~~---~~~~~~~---------~~~~~v~~~~~~~~   51 (112)
                      ..++|.|++. .++++...|.|++++....   ..+..+.         ..+.....++++|+
T Consensus        17 ~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~   79 (463)
T 2wg3_C           17 VGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN   79 (463)
T ss_dssp             EEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred             eEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence            3688999986 4555667799999974322   1222221         11456789999995

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=86.21  E-value=7.1  Score=27.59  Aligned_cols=95  Identities=15%  Similarity=0.190  Sum_probs=57.3

Q ss_pred             CEEEEEcCCCcEEEEEcCCCCCcEEE--eeccCCeeEEEEccC------CCEEEEeeC-CCcEEEeeCCCCCceEEecC-
Q 045566           11 TTVFSGGCDKQVKMWPLLSGGQPVTV--AMHDAPIKEVAWIPE------MNLLATGSW-DKTLKYWDTRQPNPVHTQQL-   80 (112)
Q Consensus        11 ~~l~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~------~~~~~~~~~-~~~i~~w~~~~~~~~~~~~~-   80 (112)
                      .+++.++ ++.+.++++..++ +...  ..-...|.|+++.|.      +.+++.|.. |+.++++++...+.+..... 
T Consensus       524 ~~vvva~-g~~l~~fel~~~~-L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~  601 (1158)
T 3ei3_A          524 SQVVVAV-GRALYYLQIHPQE-LRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLG  601 (1158)
T ss_dssp             SEEEEEE-TTEEEEEEEETTE-EEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECC
T ss_pred             CEEEEEE-CCEEEEEEeeCCc-eeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECC
Confidence            3444443 4566666655432 1111  123567999998763      468888987 99999999987665543322 


Q ss_pred             ---CCeEEEEee--CCCEEEEEeCCCcEEEEE
Q 045566           81 ---PDRCYALTV--RYPLMVVGTADRNLVVFN  107 (112)
Q Consensus        81 ---~~~~~~~~~--~~~~~~~~~~d~~v~~~d  107 (112)
                         ....+.+..  ...++..|-.||.+.-+.
T Consensus       602 ~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~  633 (1158)
T 3ei3_A          602 GEIIPRSILMTTFESSHYLLCALGDGALFYFG  633 (1158)
T ss_dssp             SSCCEEEEEEEEETTEEEEEEEETTSEEEEEE
T ss_pred             CCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEE
Confidence               123333322  235778888888875443

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=85.62  E-value=3.2  Score=24.84  Aligned_cols=59  Identities=14%  Similarity=0.130  Sum_probs=37.6

Q ss_pred             CEEEEeeCCCcEEEeeCCCCCceEEecCC--CeEEEEe-e---CCCEEEEE--eCCCcEEEEECcCC
Q 045566           53 NLLATGSWDKTLKYWDTRQPNPVHTQQLP--DRCYALT-V---RYPLMVVG--TADRNLVVFNLQNP  111 (112)
Q Consensus        53 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~--~~~~~~~-~---~~~~~~~~--~~d~~v~~~d~~~~  111 (112)
                      ..++.++.||.+.-.|..+++.+..+...  ...+... +   .+..++..  ..||.+..+|..+|
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G   77 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQG   77 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCC
Confidence            36778889999999999888888777554  1122211 1   12234433  47888888887654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=85.61  E-value=5.6  Score=25.84  Aligned_cols=96  Identities=10%  Similarity=-0.038  Sum_probs=55.1

Q ss_pred             eeEEEcCCCCEE-EEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566            2 LCSTWKDDGTTV-FSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         2 ~~~~~~~~~~~l-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      ..++|++.+..| ++-...+.|..+++........+.........+++.. .+.++.+-...+.|.+.++..........
T Consensus       352 ~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~  431 (619)
T 3s94_A          352 IAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILIS  431 (619)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred             EEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEE
Confidence            357788754444 4445567788887654333222332234567888886 55566666667889999887553322221


Q ss_pred             C---CCeEEEEeeCCCEEEEE
Q 045566           80 L---PDRCYALTVRYPLMVVG   97 (112)
Q Consensus        80 ~---~~~~~~~~~~~~~~~~~   97 (112)
                      .   ....++++|....++..
T Consensus       432 ~~l~~P~~iavdp~~G~ly~t  452 (619)
T 3s94_A          432 EDLEEPRAIVLDPMVGYMYWT  452 (619)
T ss_dssp             TTCCSEEEEEEETTTTEEEEE
T ss_pred             CCCCCeeeEEEEcCCCcEEEe
Confidence            1   23567777754344433

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=84.95  E-value=6  Score=25.68  Aligned_cols=107  Identities=9%  Similarity=-0.107  Sum_probs=60.8

Q ss_pred             eEEEcCCCC-EEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccC-CCEEEEeeC-CCcEEEeeCCCCCceEEec
Q 045566            3 CSTWKDDGT-TVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPE-MNLLATGSW-DKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         3 ~~~~~~~~~-~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~-~~~i~~w~~~~~~~~~~~~   79 (112)
                      .+++++.++ ..++-...+.|.+.++..................+++.|. +.++++-.. .+.|...++..........
T Consensus        88 GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~  167 (619)
T 3s94_A           88 GLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN  167 (619)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred             eEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEe
Confidence            577887544 4455566788999987643332222233445578999985 444444322 4566666665433322221


Q ss_pred             C---CCeEEEEeeCCCEEEEEeC-CCcEEEEECc
Q 045566           80 L---PDRCYALTVRYPLMVVGTA-DRNLVVFNLQ  109 (112)
Q Consensus        80 ~---~~~~~~~~~~~~~~~~~~~-d~~v~~~d~~  109 (112)
                      .   ....+++++.+..|+.+.. .+.|...|+.
T Consensus       168 ~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~d  201 (619)
T 3s94_A          168 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD  201 (619)
T ss_dssp             SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSS
T ss_pred             CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCC
Confidence            1   2256788876666655543 4567766654

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=84.51  E-value=6.4  Score=25.64  Aligned_cols=56  Identities=11%  Similarity=0.097  Sum_probs=35.8

Q ss_pred             eEEEcCCCCEEEEEcC------------CCcEEEEEcCCCCCcEEEee-ccCCeeEEEEccCCCEEEEe
Q 045566            3 CSTWKDDGTTVFSGGC------------DKQVKMWPLLSGGQPVTVAM-HDAPIKEVAWIPEMNLLATG   58 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~------------~~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~   58 (112)
                      .+.|+++|.+.+....            +..|..++..+++....+.. ....++.++|+||++.|+..
T Consensus       480 nL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~  548 (592)
T 4a9v_A          480 GLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             EEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             ceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence            5788999887774322            12466666555554433332 23568999999999877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	112
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-11
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-11
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-11
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.004
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-10
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	9e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.001
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.001
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.002
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	9e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.004
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.3 bits (147), Expect = 5e-13
 Identities = 17/68 (25%), Positives = 30/68 (44%)

Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
           +   ++   G  + +G  D    +W  L   +   +A HD  +  +    +   +ATGSW
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332

Query: 61  DKTLKYWD 68
           D  LK W+
Sbjct: 333 DSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.0 bits (123), Expect = 9e-10
 Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 5/117 (4%)

Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
           V+  +   D     SG CD   K+W +  G    T   H++ I  + + P  N  ATGS 
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 246

Query: 61  DKTLKYWDTRQPNPVHTQQLPDRCYALTV-----RYPLMVVGTADRNLVVFNLQNPQ 112
           D T + +D R    + T    +    +T         L++ G  D N  V++     
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.2 bits (113), Expect = 2e-08
 Identities = 17/112 (15%), Positives = 32/112 (28%), Gaps = 5/112 (4%)

Query: 1   VLCSTWKDDGTTVFSGGCDKQVK--MWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATG 58
           +    +  +G    +G  D   +             +       I  V++     LL  G
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288

Query: 59  SWDKTLKYWDTRQPNPVHT---QQLPDRCYALTVRYPLMVVGTADRNLVVFN 107
             D     WD  + +             C  +T     +  G+ D  L ++N
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.0 bits (84), Expect = 2e-04
 Identities = 11/76 (14%), Positives = 27/76 (35%)

Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
           +    W  D   + S   D ++ +W   +  +   + +  + +   A+ P  N +A G  
Sbjct: 58  IYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL 117

Query: 61  DKTLKYWDTRQPNPVH 76
           D     ++ +      
Sbjct: 118 DNICSIYNLKTREGNV 133

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.9 bits (81), Expect = 4e-04
 Identities = 14/39 (35%), Positives = 18/39 (46%)

Query: 39 HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT 77
          H A I  + W  +  LL + S D  L  WD+   N VH 
Sbjct: 54 HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA 92

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.4 bits (137), Expect = 1e-11
 Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 3/107 (2%)

Query: 3   CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDK 62
                  G  + SG  DK +KMW + +G   +T+  HD  ++ V +      + + + DK
Sbjct: 210 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK 269

Query: 63  TLKYWDTRQPNPVHTQQLPD---RCYALTVRYPLMVVGTADRNLVVF 106
           TL+ WD +    + T    +            P +V G+ D+ + V+
Sbjct: 270 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.4 bits (137), Expect = 1e-11
 Identities = 15/68 (22%), Positives = 30/68 (44%)

Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
           V    +   G  + S   DK +++W   +     T+  H+  +  + +      + TGS 
Sbjct: 250 VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 309

Query: 61  DKTLKYWD 68
           D+T+K W+
Sbjct: 310 DQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.0 bits (97), Expect = 3e-06
 Identities = 27/133 (20%), Positives = 49/133 (36%), Gaps = 23/133 (17%)

Query: 3   CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMN--------- 53
                 DGT + S   D+ V++W + +      +  H   ++ ++W PE +         
Sbjct: 148 MVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATG 207

Query: 54  -----------LLATGSWDKTLKYWDTRQPNPVHTQQLPD---RCYALTVRYPLMVVGTA 99
                       L +GS DKT+K WD      + T    D   R          ++    
Sbjct: 208 SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD 267

Query: 100 DRNLVVFNLQNPQ 112
           D+ L V++ +N +
Sbjct: 268 DKTLRVWDYKNKR 280

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.0 bits (97), Expect = 3e-06
 Identities = 11/39 (28%), Positives = 20/39 (51%)

Query: 39 HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT 77
          H +P+  V + P  +++ + S D T+K WD    +   T
Sbjct: 16 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT 54

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.6 bits (88), Expect = 5e-05
 Identities = 17/75 (22%), Positives = 31/75 (41%)

Query: 3   CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDK 62
             +   +G  + S   DK +KMW + +G    T   H   ++ V    +  L+A+ S D+
Sbjct: 106 SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ 165

Query: 63  TLKYWDTRQPNPVHT 77
           T++ W          
Sbjct: 166 TVRVWVVATKECKAE 180

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.3 bits (82), Expect = 4e-04
 Identities = 20/92 (21%), Positives = 38/92 (41%)

Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
           V    +    + + S   D  +K+W   +G    T+  H   ++++++     LLA+ S 
Sbjct: 20  VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA 79

Query: 61  DKTLKYWDTRQPNPVHTQQLPDRCYALTVRYP 92
           D T+K WD +    + T    D   +     P
Sbjct: 80  DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP 111

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.2 bits (131), Expect = 9e-11
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 6/77 (7%)

Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI------PEMNL 54
           VL      +   + SG  D+ V  W   SG   + +  H   +  VA        PE N+
Sbjct: 311 VLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV 370

Query: 55  LATGSWDKTLKYWDTRQ 71
            ATGS D   + W  ++
Sbjct: 371 FATGSGDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.6 bits (119), Expect = 4e-09
 Identities = 28/130 (21%), Positives = 47/130 (36%), Gaps = 21/130 (16%)

Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQP------------VTVAMHDAPIKEVAW 48
           V    +  DG +V SG  D+ VK+W L +                VT   H   +  VA 
Sbjct: 257 VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT 316

Query: 49  IPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ---------LPDRCYALTVRYPLMVVGTA 99
                 + +GS D+ + +WD +  NP+   Q               +L   Y +   G+ 
Sbjct: 317 TQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSG 376

Query: 100 DRNLVVFNLQ 109
           D    ++  +
Sbjct: 377 DCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.0 bits (102), Expect = 6e-07
 Identities = 21/132 (15%), Positives = 50/132 (37%), Gaps = 22/132 (16%)

Query: 3   CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAM-------HDAPIKEVAWIPEMNLL 55
            +    DG  + +G  D+ V++W   +G     +         H   +  V +  +   +
Sbjct: 210 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV 269

Query: 56  ATGSWDKTLKYWDTRQPNPVHTQQLPD---------------RCYALTVRYPLMVVGTAD 100
            +GS D+++K W+ +  N     + P+                  A T     ++ G+ D
Sbjct: 270 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD 329

Query: 101 RNLVVFNLQNPQ 112
           R ++ ++ ++  
Sbjct: 330 RGVLFWDKKSGN 341

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 32.8 bits (73), Expect = 0.004
 Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 19/103 (18%)

Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAM------------------HDAP 42
           V C  + +DG  + +G C+K  +++ +  G     ++                    D  
Sbjct: 65  VCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY 123

Query: 43  IKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCY 85
           I+ V + P+   LATG+ D+ ++ WD      V   Q  ++  
Sbjct: 124 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDI 166

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 2e-10
 Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 1/66 (1%)

Query: 3   CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDK 62
              +   G    S G D  +  W    G   +  +   + +       +   + TGS DK
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYG-ASIFQSKESSSVLSCDISVDDKYIVTGSGDK 328

Query: 63  TLKYWD 68
               ++
Sbjct: 329 KATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 1e-06
 Identities = 9/73 (12%), Positives = 25/73 (34%), Gaps = 2/73 (2%)

Query: 38  MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRY--PLMV 95
           +H++ +  + +        +   D  L  W T     +   +      +  +      +V
Sbjct: 263 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIV 322

Query: 96  VGTADRNLVVFNL 108
            G+ D+   V+ +
Sbjct: 323 TGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 7e-05
 Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 6/91 (6%)

Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAM-----HDAPIKEVAWIPEMNLL 55
           V   T  +    V++GG    VK+W +   G    V+       D  I+    +P+   L
Sbjct: 54  VCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTL 112

Query: 56  ATGSWDKTLKYWDTRQPNPVHTQQLPDRCYA 86
             G    TL  WD   P P    +L     A
Sbjct: 113 IVGGEASTLSIWDLAAPTPRIKAELTSSAPA 143

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (79), Expect = 9e-04
 Identities = 11/74 (14%), Positives = 18/74 (24%), Gaps = 1/74 (1%)

Query: 9  DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
          DG           +    +    + +    H   +  V        + TG     +K WD
Sbjct: 20 DGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWD 78

Query: 69 TRQPNPVHTQQLPD 82
             P         D
Sbjct: 79 ISHPGNKSPVSQLD 92

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.9 bits (125), Expect = 5e-10
 Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 2/87 (2%)

Query: 1  VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV--TVAMHDAPIKEVAWIPEMNLLATG 58
          + C  W  D T +     + +V ++            +  H+  +  V W P+ N + T 
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 59 SWDKTLKYWDTRQPNPVHTQQLPDRCY 85
            D+    W  +      T  +     
Sbjct: 70 GTDRNAYVWTLKGRTWKPTLVILRINR 96

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.8 bits (83), Expect = 2e-04
 Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 5/71 (7%)

Query: 42  PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD-----RCYALTVRYPLMVV 96
           PI   AW  +   +A    +  +  ++      V   +L +                +V 
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68

Query: 97  GTADRNLVVFN 107
              DRN  V+ 
Sbjct: 69  CGTDRNAYVWT 79

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.2 bits (102), Expect = 5e-07
 Identities = 9/67 (13%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 3   CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV-TVAMHDAPIKEVAWIPEMNLLATGSWD 61
            +  + +   V +G  D  + ++ +    + +  +  H   +  + W    + L +   D
Sbjct: 220 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP-STLVSSGAD 278

Query: 62  KTLKYWD 68
             +K W+
Sbjct: 279 ACIKRWN 285

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.6 bits (98), Expect = 2e-06
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 3   CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMH-DAPIKEVAWIPEMNLLATGSWD 61
             TW  DGT + S   DK +K+W + +     T+ +      +++  I     L + S +
Sbjct: 243 GLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN 302

Query: 62  KTLKYWD 68
             + + +
Sbjct: 303 GFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.3 bits (87), Expect = 6e-05
 Identities = 13/76 (17%), Positives = 20/76 (26%), Gaps = 1/76 (1%)

Query: 9   DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
            G  +        V   P+ S         H          P     A+G     ++ WD
Sbjct: 28  AGDKIQYC-NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWD 86

Query: 69  TRQPNPVHTQQLPDRC 84
           T Q   +    +P   
Sbjct: 87  TTQTTHILKTTIPVFS 102

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (86), Expect = 9e-05
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 4/75 (5%)

Query: 38  MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT----QQLPDRCYALTVRYPL 93
            H   +  + W P+   +A+ S DKT+K W+        T     ++ D+   +      
Sbjct: 236 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA 295

Query: 94  MVVGTADRNLVVFNL 108
           +V  +A+  +   N 
Sbjct: 296 LVSISANGFINFVNP 310

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 3e-06
 Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 6/114 (5%)

Query: 3   CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDK 62
             + + DG  V SG  D  +++W + +G    T+  H +    +      N+L +G+ D 
Sbjct: 180 VYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADS 237

Query: 63  TLKYWDTRQPNPVHTQQLP----DRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112
           T+K WD +    + T Q P         L      ++  + D  + +++L+  +
Sbjct: 238 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGE 291

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (80), Expect = 6e-04
 Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 3/111 (2%)

Query: 3   CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDK 62
               + DG  V SG  D  VK+W   +     T+  H   +  + +      + +GS D 
Sbjct: 140 VRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG--IHVVSGSLDT 197

Query: 63  TLKYWDTRQPNPVHTQQLPDRC-YALTVRYPLMVVGTADRNLVVFNLQNPQ 112
           +++ WD    N +HT          + ++  ++V G AD  + +++++  Q
Sbjct: 198 SIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQ 248

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (79), Expect = 7e-04
 Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 9/75 (12%)

Query: 3   CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTV-----AMHDAPIKEVAWIPEMNLLAT 57
            +  + +   V +   D  VK+W L +G     +           +  +       + A 
Sbjct: 263 VTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAV 322

Query: 58  GSWDKT----LKYWD 68
           GS + T    L   D
Sbjct: 323 GSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (78), Expect = 0.001
 Identities = 10/76 (13%), Positives = 25/76 (32%)

Query: 4  STWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKT 63
          +  +  G  + SG  D  +K+W  ++G    T+  H   +        + +  +      
Sbjct: 21 TCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLK 80

Query: 64 LKYWDTRQPNPVHTQQ 79
          +   +T +        
Sbjct: 81 VWNAETGECIHTLYGH 96

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (77), Expect = 0.001
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 1/77 (1%)

Query: 2   LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEM-NLLATGSW 60
           L S  +     + SG  D  VK+W + +G    T+   +     V  +    N + T S 
Sbjct: 219 LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSD 278

Query: 61  DKTLKYWDTRQPNPVHT 77
           D T+K WD +    +  
Sbjct: 279 DGTVKLWDLKTGEFIRN 295

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 40.2 bits (92), Expect = 1e-05
 Identities = 4/77 (5%), Positives = 17/77 (22%), Gaps = 4/77 (5%)

Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
                  +             +  + + +      V      + ++    +   +     
Sbjct: 279 YSVPVHGEFAAYYQGAPEKGVLLKYDVKTR----KVTEVKNNLTDLRLSADRKTVMVRKD 334

Query: 61  DKTLKYWDTRQPNPVHT 77
           D  +  +   +P    T
Sbjct: 335 DGKIYTFPLEKPEDERT 351

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (90), Expect = 2e-05
 Identities = 8/69 (11%), Positives = 22/69 (31%), Gaps = 3/69 (4%)

Query: 3   CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAW---IPEMNLLATGS 59
            +    D     + G D  +++W + +        +    +              + + S
Sbjct: 256 FALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS 315

Query: 60  WDKTLKYWD 68
            D TL +++
Sbjct: 316 LDGTLNFYE 324

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 3e-05
 Identities = 9/39 (23%), Positives = 14/39 (35%)

Query: 39 HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT 77
              I ++  IP  +LL   SWD +L  +          
Sbjct: 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD 48

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.6 bits (80), Expect = 6e-04
 Identities = 6/89 (6%), Positives = 21/89 (23%), Gaps = 4/89 (4%)

Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAM---HDAPIKEVAWIP-EMNLLA 56
           +         + +     D  + ++      + V +     +  P+    +I      + 
Sbjct: 14  ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIY 73

Query: 57  TGSWDKTLKYWDTRQPNPVHTQQLPDRCY 85
            G+    +   D             +   
Sbjct: 74  VGTVQGEILKVDLIGSPSFQALTNNEANL 102

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.4 bits (77), Expect = 0.002
 Identities = 12/125 (9%), Positives = 30/125 (24%), Gaps = 17/125 (13%)

Query: 3   CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAM---------------HDAPIKEVA 47
            +    +         D +V +      G     +                   P+  + 
Sbjct: 199 VALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIE 258

Query: 48  WIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL--PDRCYALTVRYPLMVVGTADRNLVV 105
           + P    L T   D  +  W+ +    +        D    +     ++ + T+D     
Sbjct: 259 FSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKT 318

Query: 106 FNLQN 110
               +
Sbjct: 319 NAAID 323

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 3e-05
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 11/76 (14%)

Query: 2   LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV---------TVAMHDAPIKEVAWIPEM 52
           L    + D   + SG  D ++K+W L++   P          T+  H   +  + +    
Sbjct: 220 LVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE-- 277

Query: 53  NLLATGSWDKTLKYWD 68
             + + S D T+  WD
Sbjct: 278 FQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 1e-04
 Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 3/111 (2%)

Query: 3   CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDK 62
            +    D   + S   D+ +K+W   +     T+  H   I  + +     L+ +GS D 
Sbjct: 141 VNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD--RLVVSGSSDN 198

Query: 63  TLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVV-GTADRNLVVFNLQNPQ 112
           T++ WD      +   +  +            +V G  D  + V++L    
Sbjct: 199 TIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAAL 249

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 3e-05
 Identities = 11/69 (15%), Positives = 20/69 (28%), Gaps = 2/69 (2%)

Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQP-VTVAMHDAPIKEVAWIPEMNLLATGS 59
           +   T       +   G + Q  ++ L SG      +      I  V +  +  L+A   
Sbjct: 284 LSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVE 342

Query: 60  WDKTLKYWD 68
            D       
Sbjct: 343 KDGQSFLEI 351

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 5e-05
 Identities = 13/106 (12%), Positives = 37/106 (34%), Gaps = 4/106 (3%)

Query: 9   DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
           +   V +G  DK ++++  ++    + ++ HD  +  + +     L++  +      +  
Sbjct: 22  EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDI 81

Query: 69  TRQPNPVHTQQ----LPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110
            +       +     +             +V G+ D  L V+ L  
Sbjct: 82  KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK 127

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (86), Expect = 9e-05
 Identities = 5/39 (12%), Positives = 12/39 (30%)

Query: 39 HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT 77
          H+  I  ++   +   L +   +  +  WD         
Sbjct: 11 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV 49

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.5 bits (82), Expect = 2e-04
 Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 3   CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAM---HDAPIKEVAWIPEMNLLATGS 59
           C +W  D   + +G  D  V +W +        +       + +  V W+ E   + +  
Sbjct: 229 CVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE-TTIVSAG 287

Query: 60  WDKTLKYWD 68
            D  +K+W+
Sbjct: 288 QDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.1 bits (81), Expect = 3e-04
 Identities = 11/85 (12%), Positives = 22/85 (25%), Gaps = 1/85 (1%)

Query: 1  VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA-MHDAPIKEVAWIPEMNLLATGS 59
          +   +   DG T+FS   +  +  W + +G        +H   I  +    + +L     
Sbjct: 15 ITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSW 74

Query: 60 WDKTLKYWDTRQPNPVHTQQLPDRC 84
           D                       
Sbjct: 75 DDHLKVVPAGGSGVDSSKAVANKLS 99

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (85), Expect = 1e-04
 Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 39 HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTV 89
          HDA I  V+     +   + S D  LK WD +  +  + +      +    
Sbjct: 13 HDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (85), Expect = 1e-04
 Identities = 12/82 (14%), Positives = 28/82 (34%), Gaps = 13/82 (15%)

Query: 9   DGTTVFSGGCDKQVKMW------PLLSGGQPVTVAMHDAPIKEVAWI-------PEMNLL 55
             +   S   D  +K+W            +  +  +H + +  V  +        E+ L+
Sbjct: 23  CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 82

Query: 56  ATGSWDKTLKYWDTRQPNPVHT 77
           AT S+   L ++   + +    
Sbjct: 83  ATTSFSGDLLFYRITREDETKK 104

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.3 bits (74), Expect = 0.004
 Identities = 12/82 (14%), Positives = 27/82 (32%), Gaps = 6/82 (7%)

Query: 2   LCSTWKDDGTTVFSGGCDKQVKMW------PLLSGGQPVTVAMHDAPIKEVAWIPEMNLL 55
           L +   D  +       + +          P  S    +    H + +  +++      L
Sbjct: 245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL 304

Query: 56  ATGSWDKTLKYWDTRQPNPVHT 77
            +  WD  L++WD +    + T
Sbjct: 305 CSAGWDGKLRFWDVKTKERITT 326

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 35.2 bits (79), Expect = 8e-04
 Identities = 8/79 (10%), Positives = 19/79 (24%), Gaps = 1/79 (1%)

Query: 3   CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDK 62
             +   +     + G    ++ + L      +           V    + + +  G    
Sbjct: 243 YFSTAVNPAKTRAFGAYNVLESFDL-EKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALG 301

Query: 63  TLKYWDTRQPNPVHTQQLP 81
            L  +D           LP
Sbjct: 302 DLAAYDAETLEKKGQVDLP 320

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 34.7 bits (78), Expect = 0.001
 Identities = 12/82 (14%), Positives = 23/82 (28%), Gaps = 2/82 (2%)

Query: 1   VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
                          G    ++  + L    + +  A  D     VA+  + + L  G  
Sbjct: 254 YFTGLRSPKDPNQIYGV-LNRLAKYDL-KQRKLIKAANLDHTYYCVAFDKKGDKLYLGGT 311

Query: 61  DKTLKYWDTRQPNPVHTQQLPD 82
              L  ++      V   +LP 
Sbjct: 312 FNDLAVFNPDTLEKVKNIKLPG 333

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	112
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.94
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.94
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.94
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.93
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.92
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.92
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.91
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.9
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.9
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.9
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.9
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.9
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.89
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.89
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.89
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.89
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.88
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.88
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.87
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.87
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.86
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.85
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.84
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.83
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.78
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.78
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.76
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.76
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.72
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.68
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.68
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.67
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.66
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.64
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.56
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.53
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.52
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.51
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.49
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.46
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.39
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.32
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.29
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.29
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.23
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.21
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.2
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.2
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.14
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.96
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.87
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.54
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.46
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.45
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.4
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.26
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.26
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.25
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.13
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.97
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.94
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.89
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.71
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.64
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.62
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.53
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.5
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.05
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.98
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.93
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	96.43
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.43
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.27
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	95.92
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	95.89
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.81
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.71
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	95.63
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.6
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.28
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	95.25
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	95.01
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	94.39
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	93.82
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	93.41
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	93.2
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	92.58
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	91.63
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	90.34
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	90.23
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	85.26
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	83.56
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	81.03
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	80.08

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=4.5e-26  Score=133.44  Aligned_cols=111  Identities=12%  Similarity=0.118  Sum_probs=94.5

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEE------eeccCCeeEEEEccCCCEEEEeeCCCc---EEEeeCCC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTV------AMHDAPIKEVAWIPEMNLLATGSWDKT---LKYWDTRQ   71 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~---i~~w~~~~   71 (112)
                      +.+++|+|++ ++++|+.|+.|++||+.+++++..+      .+|..+|.+++|+|+++++++++.|+.   |++||+++
T Consensus       187 ~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~  265 (393)
T d1sq9a_         187 ATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF  265 (393)
T ss_dssp             CCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT
T ss_pred             EEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeeccccc
Confidence            4579999987 8899999999999999887765433      468899999999999999999998874   89999998


Q ss_pred             CCceEEec----------------CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           72 PNPVHTQQ----------------LPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        72 ~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      ++.+..+.                ..+..++|+|++++|++++.|+.|++||+++++
T Consensus       266 g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~  322 (393)
T d1sq9a_         266 GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE  322 (393)
T ss_dssp             CCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred             ceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCC
Confidence            87665543                235789999999999999999999999998863

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=1.3e-25  Score=130.62  Aligned_cols=111  Identities=18%  Similarity=0.346  Sum_probs=95.7

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCC--CcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG--QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ   78 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~   78 (112)
                      |+|++|+|++++|++|+.|+.|++|+...++  ....+.+|..+|.+++|+|+++++++++.|+.|++||+.+.......
T Consensus        10 It~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~   89 (371)
T d1k8kc_          10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL   89 (371)
T ss_dssp             CCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEE
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccc
Confidence            6899999999999999999999999987665  44567889999999999999999999999999999999876533222


Q ss_pred             -----cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           79 -----QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        79 -----~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                           ...+..+.|+|+++.+++++.|+.+++|++...
T Consensus        90 ~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~  127 (371)
T d1k8kc_          90 VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQE  127 (371)
T ss_dssp             ECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETT
T ss_pred             ccccccccccccccccccccceeecccCcceeeeeecc
Confidence                 234578899999999999999999999987653

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.94  E-value=2.2e-25  Score=127.37  Aligned_cols=112  Identities=14%  Similarity=0.144  Sum_probs=99.1

Q ss_pred             CeeEEEcCCCCE-EEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566            1 VLCSTWKDDGTT-VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         1 v~~~~~~~~~~~-l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      |.+++|+|+++. +++|+.|+.|++||+++.+....+..|...|+++.|+|+++++++++.|+.+++||.++......+.
T Consensus       149 v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~  228 (311)
T d1nr0a1         149 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFE  228 (311)
T ss_dssp             EEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECB
T ss_pred             cccccccccceeeecccccccccccccccccccccccccccccccccccCcccccccccccccccccccccccccccccc
Confidence            468999998874 7889999999999999888888888899999999999999999999999999999999887665543


Q ss_pred             ----------CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           80 ----------LPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        80 ----------~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                                ..+..++|+|++++|++|+.|+.|++||+++++
T Consensus       229 ~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~  271 (311)
T d1nr0a1         229 DDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK  271 (311)
T ss_dssp             CTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             ccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence                      235688999999999999999999999998763

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=2.8e-24  Score=122.51  Aligned_cols=107  Identities=18%  Similarity=0.216  Sum_probs=95.1

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe--eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA--MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ   78 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~   78 (112)
                      |.+++|+|++++|++|+.|+.+++|++........+.  .+...+.+++|+|++.++++|+.|+.|++||+.+.+.+..+
T Consensus       229 i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~  308 (340)
T d1tbga_         229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL  308 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEE
Confidence            4689999999999999999999999998777666553  45677999999999999999999999999999999888776


Q ss_pred             cC---CCeEEEEeeCCCEEEEEeCCCcEEEEE
Q 045566           79 QL---PDRCYALTVRYPLMVVGTADRNLVVFN  107 (112)
Q Consensus        79 ~~---~~~~~~~~~~~~~~~~~~~d~~v~~~d  107 (112)
                      ..   .+..++|+|++.++++|+.||.|++||
T Consensus       309 ~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         309 AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             cCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            54   457889999999999999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=9.3e-24  Score=121.35  Aligned_cols=107  Identities=12%  Similarity=0.201  Sum_probs=95.2

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      |.+++|+|+++.+++++.|+.+++||+...+.. ....|...|++++|+|+++++++++.|+.|++||..+++.+.....
T Consensus       227 i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~  305 (337)
T d1gxra_         227 IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE  305 (337)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             eEEEEEcccccccceeccccccccccccccccc-cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccC
Confidence            468899999999999999999999999876653 4567889999999999999999999999999999999888766543


Q ss_pred             --CCeEEEEeeCCCEEEEEeCCCcEEEEEC
Q 045566           81 --PDRCYALTVRYPLMVVGTADRNLVVFNL  108 (112)
Q Consensus        81 --~~~~~~~~~~~~~~~~~~~d~~v~~~d~  108 (112)
                        .+..++|+|++++|++++.|+.|++||+
T Consensus       306 ~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         306 SSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence              4577889999999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.92  E-value=2.4e-23  Score=118.91  Aligned_cols=109  Identities=20%  Similarity=0.302  Sum_probs=94.1

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEE-------eeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTV-------AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN   73 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~   73 (112)
                      |.+++|+|+++++++++.|+.+++||..++.....+       .+|...|.+++|+|+++++++|+.|+.|++||+++++
T Consensus       192 i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~  271 (311)
T d1nr0a1         192 VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK  271 (311)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             ccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence            468999999999999999999999999887765544       3477899999999999999999999999999999998


Q ss_pred             ceEEecCC----CeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           74 PVHTQQLP----DRCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        74 ~~~~~~~~----~~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                      .+..+...    .....+.+++..+++++.||.|++||++
T Consensus       272 ~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         272 VEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             EEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            88776543    2456677888899999999999999974

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.6e-23  Score=121.64  Aligned_cols=110  Identities=26%  Similarity=0.430  Sum_probs=90.0

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCC------------cEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEee
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ------------PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD   68 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~   68 (112)
                      |.+++|+|++++|++++.|+.+++||+.....            ......|...|.+++|+|+++++++|+.|+.|++||
T Consensus       257 v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd  336 (388)
T d1erja_         257 VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD  336 (388)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            46899999999999999999999999875433            223456788999999999999999999999999999


Q ss_pred             CCCCCceEEecCC---CeEEE------EeeCCCEEEEEeCCCcEEEEECcC
Q 045566           69 TRQPNPVHTQQLP---DRCYA------LTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        69 ~~~~~~~~~~~~~---~~~~~------~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      +++++.+..+..+   +..++      |+|++.++++++.|+.|++||++.
T Consensus       337 ~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~k  387 (388)
T d1erja_         337 KKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  387 (388)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             CCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeeee
Confidence            9999988777653   33443      466888999999999999999874

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.90  E-value=1.2e-22  Score=114.61  Aligned_cols=109  Identities=17%  Similarity=0.310  Sum_probs=87.9

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCc---EEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQP---VTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT   77 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~   77 (112)
                      |.+++|+|+++++++++.|+.+++||+.++...   ..+..|...|++++|+|++.++++++.|+.|++||+++......
T Consensus       182 i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~  261 (299)
T d1nr0a2         182 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPI  261 (299)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceE
Confidence            468999999999999999999999998776543   34456889999999999999999999999999999987653322


Q ss_pred             e--cC---CCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           78 Q--QL---PDRCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        78 ~--~~---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                      .  ..   ......+.+++.++++++.|+.|++||+.
T Consensus       262 ~~~~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         262 IIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred             EEecCCCCCcEEEEEECCCCEEEEEeCCCEEEEEecc
Confidence            2  11   12233345677899999999999999984

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=3e-22  Score=114.01  Aligned_cols=111  Identities=24%  Similarity=0.357  Sum_probs=98.8

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC-
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL-   80 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~-   80 (112)
                      ....+.+.+..+++++.|+.+++||+++++....+..|...|++++|+|++.++++++.|+.+++|+++....+..+.. 
T Consensus       188 ~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~  267 (340)
T d1tbga_         188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD  267 (340)
T ss_dssp             EEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT
T ss_pred             eeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccc
Confidence            4567778899999999999999999999998889999999999999999999999999999999999998877665532 


Q ss_pred             ----CCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           81 ----PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        81 ----~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                          .+..++|+++++++++++.|+.|++||+++++
T Consensus       268 ~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~  303 (340)
T d1tbga_         268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD  303 (340)
T ss_dssp             TCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCC
T ss_pred             cccCceEEEEECCCCCEEEEEECCCEEEEEECCCCc
Confidence                34678999999999999999999999998764

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=3.3e-22  Score=116.04  Aligned_cols=110  Identities=23%  Similarity=0.395  Sum_probs=94.3

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe------------------eccCCeeEEEEccCCCEEEEeeCCC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA------------------MHDAPIKEVAWIPEMNLLATGSWDK   62 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~------------------~~~~~v~~~~~~~~~~~~~~~~~~~   62 (112)
                      |+|++|+|+|++|++|+ |+.|++|++.+++.+..+.                  .+...|.+++|+|+++++++++.|+
T Consensus        65 V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg  143 (388)
T d1erja_          65 VCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDR  143 (388)
T ss_dssp             CCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceeccccc
Confidence            68999999999999987 7899999998876654432                  3556799999999999999999999


Q ss_pred             cEEEeeCCCCCceEEecC---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           63 TLKYWDTRQPNPVHTQQL---PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        63 ~i~~w~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      .|++|+....+.+.....   .+..+.+.+++..+++++.++.+++||.++.
T Consensus       144 ~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  195 (388)
T d1erja_         144 LIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG  195 (388)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccceeeeeeecccc
Confidence            999999998877766543   4567888899999999999999999998764

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.90  E-value=1.8e-22  Score=113.91  Aligned_cols=110  Identities=18%  Similarity=0.313  Sum_probs=93.5

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcE-EEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE---
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV-TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT---   77 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~---   77 (112)
                      .+++|+|+++++++++.|+.+++||+.+.+... ....|...|++++|+|++.++++++.++.+++||+.+......   
T Consensus       140 ~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~  219 (299)
T d1nr0a2         140 SCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNS  219 (299)
T ss_dssp             EEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            578999999999999999999999987665443 3456889999999999999999999999999999877654322   


Q ss_pred             ---ecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           78 ---QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        78 ---~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                         +...+..++|+|++.++++++.|+.|++||++++
T Consensus       220 ~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~  256 (299)
T d1nr0a2         220 WTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP  256 (299)
T ss_dssp             CCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCT
T ss_pred             ccccccccccccccccccceEEEcCCCEEEEEECCCC
Confidence               2334578899999999999999999999999875

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=6.2e-22  Score=111.38  Aligned_cols=112  Identities=19%  Similarity=0.259  Sum_probs=100.5

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec-
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ-   79 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~-   79 (112)
                      |++++|+|++++|++|+.|+.|++||+.+++...++..|...|.+++++|++..++++..++.+..|+....+...... 
T Consensus        20 I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (317)
T d1vyhc1          20 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHG   99 (317)
T ss_dssp             EEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCC
T ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccccccccccccc
Confidence            5799999999999999999999999999999999999999999999999999999999999999999988776554443 


Q ss_pred             --CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           80 --LPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        80 --~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                        .......++++++.+++++.|+.+++||+++++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  134 (317)
T d1vyhc1         100 HDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY  134 (317)
T ss_dssp             CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC
T ss_pred             ccccceeeeccCCCceEEeeccCcceeEeecccce
Confidence              344678889999999999999999999998763

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=3.6e-22  Score=116.04  Aligned_cols=111  Identities=17%  Similarity=0.252  Sum_probs=92.8

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCc--EEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE-
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQP--VTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT-   77 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~-   77 (112)
                      |.+++|+|++++|++|+.|+.|++||+.+....  ..+..|...+.+++|+|+++.+++++.++.+++|++........ 
T Consensus        54 V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~  133 (371)
T d1k8kc_          54 VTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC  133 (371)
T ss_dssp             EEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeecccccccc
Confidence            578999999999999999999999999766543  34457788999999999999999999999999998876553321 


Q ss_pred             ------ecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           78 ------QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        78 ------~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                            +...+.++.|+|++.++++++.|+.+++||+...
T Consensus       134 ~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~  173 (371)
T d1k8kc_         134 KHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIK  173 (371)
T ss_dssp             EEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCT
T ss_pred             cccccccccccccccccccccceeccccCcEEEEEeeccC
Confidence                  1224567899999999999999999999998653

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=9e-22  Score=113.01  Aligned_cols=111  Identities=19%  Similarity=0.265  Sum_probs=97.0

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe--
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ--   78 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~--   78 (112)
                      |.+++|++++..+++++.|+.+++||+++++.+..+ .+...+.+++|+|++..+++++.++.+++||+++.+.....  
T Consensus       186 v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  264 (337)
T d1gxra_         186 ASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLH  264 (337)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCC
T ss_pred             cccccccccccccccccccccccccccccceeeccc-ccccceEEEEEcccccccceecccccccccccccccccccccc
Confidence            468899999999999999999999999888766554 47889999999999999999999999999999888765443  


Q ss_pred             cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           79 QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      ...+..++|+|+++++++++.|+.|++||+++++
T Consensus       265 ~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~  298 (337)
T d1gxra_         265 ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA  298 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             ccccceEEECCCCCEEEEEeCCCeEEEEECCCCC
Confidence            3345788999999999999999999999998764

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=2.4e-22  Score=113.08  Aligned_cols=99  Identities=25%  Similarity=0.406  Sum_probs=89.9

Q ss_pred             CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC---CCeEE
Q 045566            9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL---PDRCY   85 (112)
Q Consensus         9 ~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~---~~~~~   85 (112)
                      .+..+++++.|+.+++|+..+++.+..+..|...|.+++++|+++++++++.|+.|++||+++.+.+..+..   .+..+
T Consensus       216 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~  295 (317)
T d1vyhc1         216 PGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL  295 (317)
T ss_dssp             -CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEE
T ss_pred             CCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEE
Confidence            456789999999999999999998889999999999999999999999999999999999999888776643   45788


Q ss_pred             EEeeCCCEEEEEeCCCcEEEEE
Q 045566           86 ALTVRYPLMVVGTADRNLVVFN  107 (112)
Q Consensus        86 ~~~~~~~~~~~~~~d~~v~~~d  107 (112)
                      +|+|++++|++++.|+.|++||
T Consensus       296 ~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         296 DFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EECSSSSCEEEEETTSEEEEEC
T ss_pred             EEcCCCCEEEEEeCCCeEEEeC
Confidence            9999999999999999999997

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=3.1e-22  Score=114.68  Aligned_cols=108  Identities=19%  Similarity=0.254  Sum_probs=88.8

Q ss_pred             CeeEEEcCC-CCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEc---cCCCEEEEeeCCCcEEEeeCCCCCceE
Q 045566            1 VLCSTWKDD-GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI---PEMNLLATGSWDKTLKYWDTRQPNPVH   76 (112)
Q Consensus         1 v~~~~~~~~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~~~~i~~w~~~~~~~~~   76 (112)
                      |.+++|+|+ +.++++++.|+.|++||+++++.+..+..|...+..+.|+   |+++++++++.|+.|++||+++++.+.
T Consensus       208 v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~  287 (325)
T d1pgua1         208 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQ  287 (325)
T ss_dssp             EEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             cEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEE
Confidence            468999996 6889999999999999999999888888888777666665   678999999999999999999988877


Q ss_pred             EecCC-----CeEEEEeeC-CCEEEEEeCCCcEEEEEC
Q 045566           77 TQQLP-----DRCYALTVR-YPLMVVGTADRNLVVFNL  108 (112)
Q Consensus        77 ~~~~~-----~~~~~~~~~-~~~~~~~~~d~~v~~~d~  108 (112)
                      .+..+     ...+++.+. +..+++++.|+.|++||+
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         288 KWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             EEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            66432     234444443 457899999999999996

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=1.8e-21  Score=109.32  Aligned_cols=107  Identities=18%  Similarity=0.244  Sum_probs=88.1

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcE-EEeeccCCeeEEEEccC----------CCEEEEeeCCCcEEEeeC
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV-TVAMHDAPIKEVAWIPE----------MNLLATGSWDKTLKYWDT   69 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~----------~~~~~~~~~~~~i~~w~~   69 (112)
                      +++++|+|++.+|++|+.|+.|++||+.+++... .+..|...|.+++|+|.          +.++++|+.|+.|++||+
T Consensus       165 v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~  244 (287)
T d1pgua2         165 PSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV  244 (287)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEES
T ss_pred             eeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEEC
Confidence            4689999999999999999999999998776544 34678899999999874          468999999999999999


Q ss_pred             CCCC-ceEEec---CCCeEEEEeeCCCEEEEEeCCCcEEEEEC
Q 045566           70 RQPN-PVHTQQ---LPDRCYALTVRYPLMVVGTADRNLVVFNL  108 (112)
Q Consensus        70 ~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~v~~~d~  108 (112)
                      ++.. .+....   ..+..+.|++++ .+++++.|+.|++||+
T Consensus       245 ~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         245 KRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             SCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             CCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            7744 444333   356788888875 6899999999999986

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=7.9e-22  Score=111.81  Aligned_cols=110  Identities=9%  Similarity=0.047  Sum_probs=90.0

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEE---eeccCCeeEEEEccC-CCEEEEeeCCCcEEEeeCCCCCceE
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTV---AMHDAPIKEVAWIPE-MNLLATGSWDKTLKYWDTRQPNPVH   76 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~-~~~~~~~~~~~~i~~w~~~~~~~~~   76 (112)
                      |++++|+|++++|++|+.|+.|++||+........+   ..|..+|.+++|+|+ +.++++|+.|+.+++|+........
T Consensus        14 I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~   93 (342)
T d1yfqa_          14 ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQ   93 (342)
T ss_dssp             EEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEE
T ss_pred             EEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccc
Confidence            679999999999999999999999999876654333   368999999999985 5688999999999999998876655


Q ss_pred             EecCC----CeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           77 TQQLP----DRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        77 ~~~~~----~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      .....    .....+.++...+++++.++.+++||+++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~  131 (342)
T d1yfqa_          94 ALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRN  131 (342)
T ss_dssp             ECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHH
T ss_pred             cccccccccccccccccccccccccccccccceeeccc
Confidence            44332    23445567888999999999999999764

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=3e-21  Score=110.07  Aligned_cols=105  Identities=19%  Similarity=0.311  Sum_probs=88.1

Q ss_pred             EcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCC---
Q 045566            6 WKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD---   82 (112)
Q Consensus         6 ~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~---   82 (112)
                      +++++++|++|+.|+.|++||+.+++.+.++.+|...|.+++|+|+ ..+++++.|+.+++|+....+.........   
T Consensus        19 ~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~   97 (355)
T d1nexb2          19 LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTV   97 (355)
T ss_dssp             EEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCE
T ss_pred             EEECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccc
Confidence            3446889999999999999999999999999999999999999985 578999999999999998877665554322   


Q ss_pred             --eEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           83 --RCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        83 --~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                        ....+.+++..+++++.|+.|++||+++.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~  128 (355)
T d1nexb2          98 RCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE  128 (355)
T ss_dssp             EEEEEEEETTEEEEEEEETTSEEEEEECCC-
T ss_pred             cccccccccccceeeeecCCCcEEEEEccCC
Confidence              23445667888999999999999998764

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=6.7e-21  Score=109.09  Aligned_cols=112  Identities=11%  Similarity=0.116  Sum_probs=89.8

Q ss_pred             CeeEEEcCCCCE-EEEEcCCCcEEEEEcCCCCCcEEE---eeccCCeeEEEEccC-CCEEEEeeCCCcEEEeeCCCCCce
Q 045566            1 VLCSTWKDDGTT-VFSGGCDKQVKMWPLLSGGQPVTV---AMHDAPIKEVAWIPE-MNLLATGSWDKTLKYWDTRQPNPV   75 (112)
Q Consensus         1 v~~~~~~~~~~~-l~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~-~~~~~~~~~~~~i~~w~~~~~~~~   75 (112)
                      |.+++|+|++.. +++++.|+.+++|+....+.....   ..+...|.+++|+|+ +.++++++.|+.|++||+++.+.+
T Consensus       162 v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~  241 (325)
T d1pgua1         162 INACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL  241 (325)
T ss_dssp             EEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEE
T ss_pred             cccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccc
Confidence            467899998764 678999999999998776655444   356778999999995 688999999999999999999887


Q ss_pred             EEecCC---CeEEEEe---eCCCEEEEEeCCCcEEEEECcCCC
Q 045566           76 HTQQLP---DRCYALT---VRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        76 ~~~~~~---~~~~~~~---~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      ..+..+   +....|+   +++.++++++.|+.|++||+++++
T Consensus       242 ~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~  284 (325)
T d1pgua1         242 KYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSK  284 (325)
T ss_dssp             EECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTE
T ss_pred             ccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCC
Confidence            776532   2223333   578899999999999999998763

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=7.7e-21  Score=111.10  Aligned_cols=107  Identities=12%  Similarity=0.245  Sum_probs=85.8

Q ss_pred             CeeEEEcCCCCEEEEEcCCCc---EEEEEcCCCCCcEEE-------------eeccCCeeEEEEccCCCEEEEeeCCCcE
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQ---VKMWPLLSGGQPVTV-------------AMHDAPIKEVAWIPEMNLLATGSWDKTL   64 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~---v~~~~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~~~~~~~~~~i   64 (112)
                      |.+++|+|++++|++|+.|+.   +++||+.+++.+..+             .+|...|++++|+|+++++++++.|+.|
T Consensus       234 V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v  313 (393)
T d1sq9a_         234 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL  313 (393)
T ss_dssp             EEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred             EEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEE
Confidence            568999999999999998874   899999888766654             3688999999999999999999999999


Q ss_pred             EEeeCCCCCceEEecCCC------------------------eEEEEeeC----------CCEEEEEeCCCcEEEEE
Q 045566           65 KYWDTRQPNPVHTQQLPD------------------------RCYALTVR----------YPLMVVGTADRNLVVFN  107 (112)
Q Consensus        65 ~~w~~~~~~~~~~~~~~~------------------------~~~~~~~~----------~~~~~~~~~d~~v~~~d  107 (112)
                      ++||+++++.+..+..+.                        ..+.+.+.          .+.+++.+.|+.|++|.
T Consensus       314 ~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~  390 (393)
T d1sq9a_         314 RFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  390 (393)
T ss_dssp             EEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             EEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEEEe
Confidence            999999988776654321                        12333332          23588888899999885

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.3e-19  Score=102.75  Aligned_cols=108  Identities=21%  Similarity=0.367  Sum_probs=91.7

Q ss_pred             eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC--
Q 045566            3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL--   80 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~--   80 (112)
                      ...+++++..+++++.|+.|++||++..+.+..+..|...+.++.++  +.++++++.|+.|++||+...+....+..  
T Consensus       180 ~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~  257 (342)
T d2ovrb2         180 VYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPN  257 (342)
T ss_dssp             EEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTT
T ss_pred             cccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccc
Confidence            34556688999999999999999999999888888899999888776  46999999999999999998887766643  


Q ss_pred             --CCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           81 --PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        81 --~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                        .....++.++++++++++.||.|++||+++++
T Consensus       258 ~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~  291 (342)
T d2ovrb2         258 KHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGE  291 (342)
T ss_dssp             SCSSCEEEEEECSSEEEEEETTSEEEEEETTTCC
T ss_pred             eeeeceeecccCCCeeEEEcCCCEEEEEECCCCC
Confidence              23456677788999999999999999999874

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3.6e-19  Score=99.11  Aligned_cols=105  Identities=21%  Similarity=0.366  Sum_probs=89.5

Q ss_pred             EEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCC-Ce
Q 045566            5 TWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP-DR   83 (112)
Q Consensus         5 ~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~-~~   83 (112)
                      |+++++++|++|+.|+.|++||+.+++...++.+|...|.+++|  +++++++++.|+.+++|++............ ..
T Consensus        20 c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~   97 (293)
T d1p22a2          20 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEA   97 (293)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSC
T ss_pred             EEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccccccccccccccccc
Confidence            35668999999999999999999999999999999999999887  5789999999999999999988776655443 34


Q ss_pred             EEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           84 CYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        84 ~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      .....+....++++..++.+.+||..+.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (293)
T d1p22a2          98 VLHLRFNNGMMVTCSKDRSIAVWDMASP  125 (293)
T ss_dssp             EEEEECCTTEEEEEETTSCEEEEECSSS
T ss_pred             cccccccccceeecccccceeEeecccc
Confidence            4556667778999999999999998754

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=1.4e-19  Score=103.10  Aligned_cols=108  Identities=16%  Similarity=0.315  Sum_probs=88.5

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe-cC
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ-QL   80 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~-~~   80 (112)
                      .++.|+|++..+++++.|+.+++|+..++.....+..|...|.++.++  ++++++++.|+.|++||+++....... ..
T Consensus       205 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  282 (355)
T d1nexb2         205 YSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHT  282 (355)
T ss_dssp             EEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEEEECT
T ss_pred             ccccccccceeeecccccceEEeeeccccccccccccccccccccccc--cceeeeeecccccccccccccceecccccC
Confidence            467899999999999999999999999999988999999999999986  468999999999999999887655443 33


Q ss_pred             CCeE-EEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           81 PDRC-YALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        81 ~~~~-~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      .... ..+.+++.+++++ .|+.|++||+++++
T Consensus       283 ~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~  314 (355)
T d1nexb2         283 NLSAITTFYVSDNILVSG-SENQFNIYNLRSGK  314 (355)
T ss_dssp             TCCCCCEEEECSSEEEEE-ETTEEEEEETTTCC
T ss_pred             CceEEEEEcCCCCEEEEE-eCCEEEEEECCCCC
Confidence            3333 3456666655554 58999999999874

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.5e-17  Score=94.18  Aligned_cols=69  Identities=23%  Similarity=0.396  Sum_probs=61.4

Q ss_pred             EEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCce
Q 045566            5 TWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV   75 (112)
Q Consensus         5 ~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~   75 (112)
                      +++++|++|++|+.|+.|++||+.+++++.++.+|...|.+++|+++  ++++++.|+.+++|+.......
T Consensus        22 ~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~   90 (342)
T d2ovrb2          22 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECI   90 (342)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEE
T ss_pred             EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccce
Confidence            45667999999999999999999999999999999999999999864  8999999999999998765543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=9.6e-18  Score=93.97  Aligned_cols=109  Identities=13%  Similarity=0.148  Sum_probs=83.4

Q ss_pred             eEEEcCCCCEEEEEcCCC-cEEEEEcCCCCCcEEEe-eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE---
Q 045566            3 CSTWKDDGTTVFSGGCDK-QVKMWPLLSGGQPVTVA-MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT---   77 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~-~v~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~---   77 (112)
                      ..++++++..+++++.++ .+++|++...+....+. .+...+++++|+|++.++++++.++.|++||+.+.+....   
T Consensus       123 ~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~  202 (287)
T d1pgua2         123 GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWA  202 (287)
T ss_dssp             EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSC
T ss_pred             eeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccccc
Confidence            356677788887776664 79999986555444433 4677899999999999999999999999999987765432   


Q ss_pred             -ecCCCeEEEEee----------CCCEEEEEeCCCcEEEEECcCC
Q 045566           78 -QQLPDRCYALTV----------RYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        78 -~~~~~~~~~~~~----------~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                       +...+..++|+|          ++.++++++.|+.|++||++++
T Consensus       203 ~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~  247 (287)
T d1pgua2         203 FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP  247 (287)
T ss_dssp             CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred             ccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCC
Confidence             223446677765          3568999999999999998764

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.76  E-value=7.8e-18  Score=96.41  Aligned_cols=107  Identities=11%  Similarity=0.018  Sum_probs=86.2

Q ss_pred             eEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCC--CcEEEeeCCCCCceEEe-
Q 045566            3 CSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWD--KTLKYWDTRQPNPVHTQ-   78 (112)
Q Consensus         3 ~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~w~~~~~~~~~~~-   78 (112)
                      .-.||| +|+++++++. +.|.+||...+.. ..+ .|...|.+++|+|+++.+++++.+  ..+++||.++++..... 
T Consensus         7 ~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~-~~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~   83 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVSR-GQAFIQDVSGTYV-LKV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEE   83 (360)
T ss_dssp             EEEEEECGGGCEEEEET-TEEEEECTTSSBE-EEC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCC
T ss_pred             cccccCCCCCEEEEEEC-CeEEEEECCCCcE-EEc-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeC
Confidence            457999 9999998875 7999999875544 333 588999999999999998876654  36999999887654432 


Q ss_pred             -cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           79 -QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        79 -~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                       ...+..++|+|+++++++++.++.+++|++.+++
T Consensus        84 ~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  118 (360)
T d1k32a3          84 NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK  118 (360)
T ss_dssp             CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             CCceEEeeeecccccccceeccccccccccccccc
Confidence             3345788999999999999999999999998753

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.76  E-value=1.4e-17  Score=95.39  Aligned_cols=110  Identities=7%  Similarity=0.070  Sum_probs=89.4

Q ss_pred             CeeEEEcCCCCEEEEEcCCC--cEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566            1 VLCSTWKDDGTTVFSGGCDK--QVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ   78 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~   78 (112)
                      |.+++|+|+|+.|++++.+.  .+++||..+++ ...+..|...+.+++|+|+++++++++.++.+.+|++.+.+.....
T Consensus        45 v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~-~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~  123 (360)
T d1k32a3          45 IRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK-AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE  123 (360)
T ss_dssp             EEEEEECSSSEEEEEEEETTEEEEEEEETTTCC-EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc-EEEeeCCCceEEeeeecccccccceeccccccccccccccceeeee
Confidence            46899999999998776553  78999987655 4566778999999999999999999999999999999988866555


Q ss_pred             cC---CCeEEEEeeCCCEEEEEe----------CCCcEEEEECcCC
Q 045566           79 QL---PDRCYALTVRYPLMVVGT----------ADRNLVVFNLQNP  111 (112)
Q Consensus        79 ~~---~~~~~~~~~~~~~~~~~~----------~d~~v~~~d~~~~  111 (112)
                      ..   ....++|+|++++++.+.          .++.+++||+.++
T Consensus       124 ~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~  169 (360)
T d1k32a3         124 RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR  169 (360)
T ss_dssp             ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT
T ss_pred             ecccccccchhhccceeeeeeeccccccceeeccccceeeeccccC
Confidence            43   456799999999988653          3446889998765

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.72  E-value=4.4e-17  Score=96.07  Aligned_cols=99  Identities=8%  Similarity=-0.058  Sum_probs=78.9

Q ss_pred             EEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE--ecCCC--e----
Q 045566           12 TVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT--QQLPD--R----   83 (112)
Q Consensus        12 ~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~--~~~~~--~----   83 (112)
                      ++++.+.|+.|++||+.+++.+.++..+ ..+..++|+|||+++++++.|+.+++||+.+.+....  .....  .    
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~  112 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES  112 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence            5577889999999999999998888866 4689999999999999999999999999998875432  22221  2    


Q ss_pred             EEEEeeCCCEEEEE-eCCCcEEEEECcCC
Q 045566           84 CYALTVRYPLMVVG-TADRNLVVFNLQNP  111 (112)
Q Consensus        84 ~~~~~~~~~~~~~~-~~d~~v~~~d~~~~  111 (112)
                      ...|+|+|++++++ ..++.+.+||..++
T Consensus       113 s~~~spDG~~l~v~~~~~~~v~i~d~~~~  141 (426)
T d1hzua2         113 SKFKGYEDRYTIAGAYWPPQFAIMDGETL  141 (426)
T ss_dssp             CCSTTCTTTEEEEEEEESSEEEEEETTTC
T ss_pred             eeeecCCCCEEEEeecCCCeEEEEcCCcc
Confidence            33456789987555 57889999998875

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.68  E-value=2.9e-16  Score=92.94  Aligned_cols=100  Identities=7%  Similarity=-0.084  Sum_probs=79.7

Q ss_pred             EEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCce--EEecCC--CeEE--
Q 045566           12 TVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV--HTQQLP--DRCY--   85 (112)
Q Consensus        12 ~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~--~~~~~~--~~~~--   85 (112)
                      ++++.+.++.|.+||..+++.+..+..+ ..+..++|+|||+++++++.|+.+.+||+.+.+..  ..+...  ...+  
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~  112 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET  112 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEE
Confidence            4588899999999999999999998866 46899999999999999999999999999876533  333321  1223  


Q ss_pred             --EEeeCCCEE-EEEeCCCcEEEEECcCCC
Q 045566           86 --ALTVRYPLM-VVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        86 --~~~~~~~~~-~~~~~d~~v~~~d~~~~~  112 (112)
                        .|+|+|+++ +++..++.+++||..+++
T Consensus       113 s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~  142 (432)
T d1qksa2         113 SKMEGWEDKYAIAGAYWPPQYVIMDGETLE  142 (432)
T ss_dssp             CCSTTCTTTEEEEEEEETTEEEEEETTTCC
T ss_pred             ecccCCCCCEEEEEcCCCCeEEEEeCcccc
Confidence              356789876 667779999999998764

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.68  E-value=7.5e-16  Score=87.59  Aligned_cols=108  Identities=8%  Similarity=-0.010  Sum_probs=86.5

Q ss_pred             EEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe-eccCCeeEEEEccCCCEE-EEeeCCCcEEEeeCCCCCceEEecC-
Q 045566            4 STWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA-MHDAPIKEVAWIPEMNLL-ATGSWDKTLKYWDTRQPNPVHTQQL-   80 (112)
Q Consensus         4 ~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~-~~~~~~~~i~~w~~~~~~~~~~~~~-   80 (112)
                      ++|+++++++++++.++.|.+||+.+.+.+.++. .+......++|+|||+++ +++..++.|.+||+.+.+.+..... 
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            5789999999999999999999999998887776 345567899999999976 5556789999999999877665532 


Q ss_pred             --------CCeEEEEeeCCCEEEEEe------------CCCcEEEEECcCC
Q 045566           81 --------PDRCYALTVRYPLMVVGT------------ADRNLVVFNLQNP  111 (112)
Q Consensus        81 --------~~~~~~~~~~~~~~~~~~------------~d~~v~~~d~~~~  111 (112)
                              ....+.++|+++++++++            .+..+.+||..++
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~  132 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADG  132 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGG
T ss_pred             ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccc
Confidence                    234678999999887765            3667888877653

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=4.6e-15  Score=82.25  Aligned_cols=100  Identities=20%  Similarity=0.301  Sum_probs=84.3

Q ss_pred             CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCC-eEEEE
Q 045566            9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD-RCYAL   87 (112)
Q Consensus         9 ~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~-~~~~~   87 (112)
                      ....+++++.|+.+++||..+.+....+..+...+..+.++  +..+++++.|+.|++||+++.+.+....... ....+
T Consensus       147 ~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~  224 (293)
T d1p22a2         147 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI  224 (293)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             cccccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeeec
Confidence            45677888999999999999999888888888888887775  5689999999999999999998887776543 34566


Q ss_pred             eeCCCEEEEEeCCCcEEEEECcC
Q 045566           88 TVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        88 ~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      .+++..+++++.|+.|++||++.
T Consensus       225 ~~~~~~l~sg~~dg~i~iwd~~~  247 (293)
T d1p22a2         225 RFDNKRIVSGAYDGKIKVWDLVA  247 (293)
T ss_dssp             ECCSSEEEEEETTSCEEEEEHHH
T ss_pred             cccceEEEEEcCCCEEEEEECCC
Confidence            77889999999999999999753

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.66  E-value=1.9e-15  Score=89.47  Aligned_cols=111  Identities=15%  Similarity=0.080  Sum_probs=83.3

Q ss_pred             CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcE--EEe---eccCCeeEEEEccCCCEE-EEeeCCCcEEEeeCCCCCc
Q 045566            1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV--TVA---MHDAPIKEVAWIPEMNLL-ATGSWDKTLKYWDTRQPNP   74 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~--~~~---~~~~~v~~~~~~~~~~~~-~~~~~~~~i~~w~~~~~~~   74 (112)
                      +..++|+|||+++++++.|+.+++||+.+++...  .++   .+.+.+.+..|+|||+++ +++..++.+.+||..+.+.
T Consensus        64 ~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~  143 (432)
T d1qksa2          64 VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP  143 (432)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE
T ss_pred             eeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccc
Confidence            3578999999999999999999999998876543  232   444555666778899975 6788899999999999887


Q ss_pred             eEEecCC--------------CeEEEEeeCCCEE-EEEeCCCcEEEEECcCC
Q 045566           75 VHTQQLP--------------DRCYALTVRYPLM-VVGTADRNLVVFNLQNP  111 (112)
Q Consensus        75 ~~~~~~~--------------~~~~~~~~~~~~~-~~~~~d~~v~~~d~~~~  111 (112)
                      +......              ...+.+++++..+ ++...++.+.+||..++
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~  195 (432)
T d1qksa2         144 KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDL  195 (432)
T ss_dssp             EEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCS
T ss_pred             eeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCC
Confidence            6654321              1246678888765 45566788999987664

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=1.2e-14  Score=81.91  Aligned_cols=109  Identities=17%  Similarity=0.143  Sum_probs=81.4

Q ss_pred             eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEE---EeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCce---
Q 045566            3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVT---VAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNPV---   75 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~~---   75 (112)
                      ...+.+.+..+++++.|+.+++|++...+....   .........+..+.+ ++..+++++.++.+.+|++......   
T Consensus       153 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~  232 (342)
T d1yfqa_         153 IFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNS  232 (342)
T ss_dssp             EEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTC
T ss_pred             eeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeec
Confidence            345667888999999999999999987665432   223445566666655 7788999999999999987644211   


Q ss_pred             ---EE------------ecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           76 ---HT------------QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        76 ---~~------------~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                         ..            +...+.+++|+|++++|++|+.||.|++||++++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~  283 (342)
T d1yfqa_         233 SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR  283 (342)
T ss_dssp             TTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred             cccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCC
Confidence               11            1112357899999999999999999999999875

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.56  E-value=8.9e-14  Score=78.66  Aligned_cols=101  Identities=8%  Similarity=-0.012  Sum_probs=80.4

Q ss_pred             CEEEEEcCCCcEEEEEcCCCCCcEEEeec--cCCeeEEEEccCCCEE-EEeeCCCcEEEeeCCCCCceEEecCC------
Q 045566           11 TTVFSGGCDKQVKMWPLLSGGQPVTVAMH--DAPIKEVAWIPEMNLL-ATGSWDKTLKYWDTRQPNPVHTQQLP------   81 (112)
Q Consensus        11 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~-~~~~~~~~i~~w~~~~~~~~~~~~~~------   81 (112)
                      +++++++.|++|.+||+.+.+.+..++.+  ...+..++|+|+|+++ ++++.++.|.+||+.+++.+.....+      
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            57899999999999999998888777643  3457899999999987 56678999999999999887665432      


Q ss_pred             --CeEEEEeeCCCEEEEEeC------------CCcEEEEECcCC
Q 045566           82 --DRCYALTVRYPLMVVGTA------------DRNLVVFNLQNP  111 (112)
Q Consensus        82 --~~~~~~~~~~~~~~~~~~------------d~~v~~~d~~~~  111 (112)
                        ...+.++|++..++++..            +..+.+||..++
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  125 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL  125 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCC
Confidence              246789999998887763            566778887664

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.53  E-value=1.1e-12  Score=73.18  Aligned_cols=110  Identities=15%  Similarity=0.061  Sum_probs=80.0

Q ss_pred             eeEEEcCCCCEEEEEcCC-CcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEee---CCCcEEEeeCCCCCceEE
Q 045566            2 LCSTWKDDGTTVFSGGCD-KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGS---WDKTLKYWDTRQPNPVHT   77 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~~~i~~w~~~~~~~~~~   77 (112)
                      ..++++|++..+++++.+ +.+.+++....+...... .......+.+++++..++.+.   .++.|.+||..+.+.+..
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~  239 (301)
T d1l0qa2         161 KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITAR  239 (301)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEE
T ss_pred             eEEEeeccccceeeecccccccccccccceeeeeccc-ccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEE
Confidence            467899999888777655 556667655444433333 445567889999888776543   346799999999887766


Q ss_pred             ecC--CCeEEEEeeCCCEEE-EEeCCCcEEEEECcCCC
Q 045566           78 QQL--PDRCYALTVRYPLMV-VGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        78 ~~~--~~~~~~~~~~~~~~~-~~~~d~~v~~~d~~~~~  112 (112)
                      +..  ....++|+|++++++ +++.++.|.+||+++++
T Consensus       240 ~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~  277 (301)
T d1l0qa2         240 IPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNT  277 (301)
T ss_dssp             EECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             EcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCe
Confidence            543  346789999999774 66678999999998864

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.52  E-value=2e-13  Score=80.38  Aligned_cols=78  Identities=13%  Similarity=0.068  Sum_probs=61.8

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEE--E---eeccCCeeEEEEccCCCEEE-EeeCCCcEEEeeCCCCCce
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVT--V---AMHDAPIKEVAWIPEMNLLA-TGSWDKTLKYWDTRQPNPV   75 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~--~---~~~~~~v~~~~~~~~~~~~~-~~~~~~~i~~w~~~~~~~~   75 (112)
                      ..++|+|||+++++++.|+.+++||+.+++....  +   ..|...+.+++|+|+|++++ ++..++.+.+||..+...+
T Consensus        65 ~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~  144 (426)
T d1hzua2          65 HISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK  144 (426)
T ss_dssp             EEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEE
T ss_pred             eEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCcccee
Confidence            5789999999999999999999999998876443  2   24555566777888999865 4557899999999988766


Q ss_pred             EEec
Q 045566           76 HTQQ   79 (112)
Q Consensus        76 ~~~~   79 (112)
                      ....
T Consensus       145 ~~~~  148 (426)
T d1hzua2         145 QIVS  148 (426)
T ss_dssp             EEEE
T ss_pred             EEee
Confidence            5543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.51  E-value=6.4e-13  Score=75.07  Aligned_cols=108  Identities=10%  Similarity=0.031  Sum_probs=83.4

Q ss_pred             eeEEEcCCCCEE-EEEcCCCcEEEEEcCCCCCcEEEeecc-----CCeeEEEEccCCCEEEEee------------CCCc
Q 045566            2 LCSTWKDDGTTV-FSGGCDKQVKMWPLLSGGQPVTVAMHD-----APIKEVAWIPEMNLLATGS------------WDKT   63 (112)
Q Consensus         2 ~~~~~~~~~~~l-~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~------------~~~~   63 (112)
                      .+++|+|+|+++ ++++.++.|.+||+.+++....+..+.     ..+..++|+|+++.++.+.            .+..
T Consensus        37 ~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~  116 (337)
T d1pbyb_          37 MVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTR  116 (337)
T ss_dssp             CCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCE
T ss_pred             cEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccc
Confidence            478999999987 566789999999999988877665432     3345789999999887765            4567


Q ss_pred             EEEeeCCCCCceEEecC--CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           64 LKYWDTRQPNPVHTQQL--PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        64 i~~w~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      +.+||..+.+....+..  ....+.+++++.++++++.  .+.+||..++
T Consensus       117 ~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~  164 (337)
T d1pbyb_         117 VALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR--DLHVMDPEAG  164 (337)
T ss_dssp             EEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESS--SEEEEETTTT
T ss_pred             eeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcC--CcceeeeecC
Confidence            88899988877666544  3467899999999998865  4677887764

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.49  E-value=2.1e-12  Score=72.05  Aligned_cols=109  Identities=20%  Similarity=0.153  Sum_probs=84.6

Q ss_pred             eeEEEcCCCCEE-EEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEE-EeeCCCcEEEeeCCCCCceEEec
Q 045566            2 LCSTWKDDGTTV-FSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA-TGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         2 ~~~~~~~~~~~l-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      ..++|+|+|+++ +++..++.|.+||+.+++.+..+..+. ....+.+++++..++ ++..+..+.+|+..+.+......
T Consensus        35 ~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (301)
T d1l0qa2          35 MGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK  113 (301)
T ss_dssp             EEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccccccccccccccccccceeeecccccceeeeecc
Confidence            468999999987 466788999999999888887777554 458899999887655 55567889999998887776655


Q ss_pred             CC--CeEEEEeeCCCEEEE-EeCCCcEEEEECcCC
Q 045566           80 LP--DRCYALTVRYPLMVV-GTADRNLVVFNLQNP  111 (112)
Q Consensus        80 ~~--~~~~~~~~~~~~~~~-~~~d~~v~~~d~~~~  111 (112)
                      ..  ...+.+++++..++. +..+..+.+|+..++
T Consensus       114 ~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~  148 (301)
T d1l0qa2         114 TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK  148 (301)
T ss_dssp             CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             ccccceEEEeecCCCeeeeeeccccceeeeecccc
Confidence            43  357788999987755 455777899988764

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=2.6e-12  Score=72.60  Aligned_cols=99  Identities=13%  Similarity=0.136  Sum_probs=72.6

Q ss_pred             EEEEEcCCCcEEEEEcCCCCCcEEE--eeccCCeeEEEEccCCCEEEEe-eCCCcEEEeeCCCCCceEE------ecCCC
Q 045566           12 TVFSGGCDKQVKMWPLLSGGQPVTV--AMHDAPIKEVAWIPEMNLLATG-SWDKTLKYWDTRQPNPVHT------QQLPD   82 (112)
Q Consensus        12 ~l~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~-~~~~~i~~w~~~~~~~~~~------~~~~~   82 (112)
                      .+++++.++.|++|++.....+..+  ..+...+..++|+|+|++++++ ..++.|.+|++........      .....
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            3477789999999998765544333  3577889999999999988555 4589999999876542211      12234


Q ss_pred             eEEEEeeCCCEEEEEeC-CCcEEEEECcC
Q 045566           83 RCYALTVRYPLMVVGTA-DRNLVVFNLQN  110 (112)
Q Consensus        83 ~~~~~~~~~~~~~~~~~-d~~v~~~d~~~  110 (112)
                      ..++++|+++++++++. ++.+.+|+...
T Consensus        86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~  114 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAGNVSVTRLED  114 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             eEEEEcCCCCEEeecccCCCceeeecccc
Confidence            57899999999998876 56788887553

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=2.2e-11  Score=68.72  Aligned_cols=110  Identities=11%  Similarity=0.097  Sum_probs=78.7

Q ss_pred             CeeEEEcCCCCEEEEE-cCCCcEEEEEcCCCCCcEEEe---eccCCeeEEEEccCCCEEEEeeC-CCcEEEeeCCCCCce
Q 045566            1 VLCSTWKDDGTTVFSG-GCDKQVKMWPLLSGGQPVTVA---MHDAPIKEVAWIPEMNLLATGSW-DKTLKYWDTRQPNPV   75 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~-~~~~~v~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~-~~~i~~w~~~~~~~~   75 (112)
                      +..++|+|||++|+++ ..|+.|.+|++.......++.   .....+..++|+|+|++++.++. ++.+.+|+.......
T Consensus        39 v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~  118 (333)
T d1ri6a_          39 VQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPV  118 (333)
T ss_dssp             CCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEE
T ss_pred             EeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccce
Confidence            4679999999988555 558999999988766544332   33455678999999999888875 677888887655433


Q ss_pred             EEe-----cCCCeEEEEeeCCCEEEEEeCC-CcEEEEECcC
Q 045566           76 HTQ-----QLPDRCYALTVRYPLMVVGTAD-RNLVVFNLQN  110 (112)
Q Consensus        76 ~~~-----~~~~~~~~~~~~~~~~~~~~~d-~~v~~~d~~~  110 (112)
                      ...     ......+.++++++.++.++.+ ..+.+|+..+
T Consensus       119 ~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~  159 (333)
T d1ri6a_         119 GVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSD  159 (333)
T ss_dssp             EEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             ecccccCCCccceEEEeeecceeeeccccccceeeEEEecc
Confidence            221     1234567889999988877654 4588888654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.32  E-value=1.3e-11  Score=69.82  Aligned_cols=96  Identities=17%  Similarity=0.088  Sum_probs=73.6

Q ss_pred             EcCCCcEEEEEcCCCCCcE-EEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC--CCeEEEEeeCCC
Q 045566           16 GGCDKQVKMWPLLSGGQPV-TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL--PDRCYALTVRYP   92 (112)
Q Consensus        16 ~~~~~~v~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~--~~~~~~~~~~~~   92 (112)
                      +..+..+.+|+..++.... ....+...+..+.+++++..++... ++.+.+||..+.+.+.....  ....++|+|+++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~  304 (346)
T d1jmxb_         226 ADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGD  304 (346)
T ss_dssp             CEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSS
T ss_pred             ccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCC
Confidence            3445567778877666544 3445677788888988777666554 45799999999887766543  457899999999


Q ss_pred             EEEEEeCCCcEEEEECcCCC
Q 045566           93 LMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        93 ~~~~~~~d~~v~~~d~~~~~  112 (112)
                      ++++++.|+.|++||+++++
T Consensus       305 ~l~v~~~d~~v~v~D~~t~~  324 (346)
T d1jmxb_         305 KLYLGGTFNDLAVFNPDTLE  324 (346)
T ss_dssp             CEEEESBSSEEEEEETTTTE
T ss_pred             EEEEEeCCCcEEEEECccCC
Confidence            99999999999999998864

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.29  E-value=2.1e-10  Score=65.83  Aligned_cols=108  Identities=14%  Similarity=-0.056  Sum_probs=78.9

Q ss_pred             eeEEEcCCCCEEEEEc-----CCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEee----------CCCcEEE
Q 045566            2 LCSTWKDDGTTVFSGG-----CDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGS----------WDKTLKY   66 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------~~~~i~~   66 (112)
                      ..++++|+|+.++...     ..+.|.+||..+++.+.++..+..  ..++|+|||++++.+.          .++.+.+
T Consensus        24 ~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~--~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v  101 (373)
T d2madh_          24 NDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL--PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEV  101 (373)
T ss_pred             cccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCC--ccEEEcCCCCEEEEEeecCCcccccccceEEEE
Confidence            4678999999887652     345799999999988887765543  3789999999988764          3577999


Q ss_pred             eeCCCCCceEEecCC----------CeEEEEeeCCCEEEEEe--CCCcEEEEECcCC
Q 045566           67 WDTRQPNPVHTQQLP----------DRCYALTVRYPLMVVGT--ADRNLVVFNLQNP  111 (112)
Q Consensus        67 w~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~--~d~~v~~~d~~~~  111 (112)
                      ||..+.+.+.....+          ...+.+++++..++...  .++.+.+|+...+
T Consensus       102 ~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~  158 (373)
T d2madh_         102 FDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGS  158 (373)
T ss_pred             EECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCC
Confidence            999998877655432          24567888888665554  3456778876543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.29  E-value=3.6e-11  Score=68.55  Aligned_cols=106  Identities=11%  Similarity=-0.008  Sum_probs=79.4

Q ss_pred             EEEcCCCCEEEEEc-----CCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEe----------eCCCcEEEee
Q 045566            4 STWKDDGTTVFSGG-----CDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATG----------SWDKTLKYWD   68 (112)
Q Consensus         4 ~~~~~~~~~l~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----------~~~~~i~~w~   68 (112)
                      .+.+|+++.+++..     .+..+.+||..+++.+.++..+..  ..++|+|++++++..          ..++.|.+||
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D   84 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFD   84 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCC--CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEE
Confidence            35689999887653     355799999999888887765543  368999999977654          3478899999


Q ss_pred             CCCCCceEEecC----------CCeEEEEeeCCCEEEEEeC--CCcEEEEECcCC
Q 045566           69 TRQPNPVHTQQL----------PDRCYALTVRYPLMVVGTA--DRNLVVFNLQNP  111 (112)
Q Consensus        69 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~--d~~v~~~d~~~~  111 (112)
                      ..+.+.+..+..          ....+.|++++..+++.+.  +..+.+||..++
T Consensus        85 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~  139 (355)
T d2bbkh_          85 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK  139 (355)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT
T ss_pred             CCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCC
Confidence            999887765432          1245789999998877754  557889988765

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.23  E-value=4e-11  Score=71.14  Aligned_cols=105  Identities=10%  Similarity=0.049  Sum_probs=77.9

Q ss_pred             CeeEEEcCCCCEEEEEcC---------CCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCC
Q 045566            1 VLCSTWKDDGTTVFSGGC---------DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ   71 (112)
Q Consensus         1 v~~~~~~~~~~~l~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~   71 (112)
                      |.++.|+|||++|+.++.         ++.+.+||+.+++. ..+..+...+....|+|+|+.++.. .++.+.+|+..+
T Consensus        64 i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~  141 (470)
T d2bgra1          64 INDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPN  141 (470)
T ss_dssp             CCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTT
T ss_pred             cceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEe-ecccceEEECCC
Confidence            467899999999988753         56788999987653 4566678889999999999998875 567899999887


Q ss_pred             CCceEEecC---------------------CCeEEEEeeCCCEEEEEeCCCc-EEEEE
Q 045566           72 PNPVHTQQL---------------------PDRCYALTVRYPLMVVGTADRN-LVVFN  107 (112)
Q Consensus        72 ~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~d~~-v~~~d  107 (112)
                      ++.......                     ....+.|+|+|+.++....|.. +..++
T Consensus       142 g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~  199 (470)
T d2bgra1         142 LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIE  199 (470)
T ss_dssp             SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEE
T ss_pred             CceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEE
Confidence            765443211                     1245779999999988876543 44443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.21  E-value=2.8e-10  Score=64.79  Aligned_cols=110  Identities=10%  Similarity=0.120  Sum_probs=77.5

Q ss_pred             eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEE--Eee----------ccCCeeEEEEccCCCEEEEeeCC---------
Q 045566            3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVT--VAM----------HDAPIKEVAWIPEMNLLATGSWD---------   61 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~--~~~----------~~~~v~~~~~~~~~~~~~~~~~~---------   61 (112)
                      ...+.+++..++.++.++.+.+|+...++....  ...          .......+++++++..++....+         
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  278 (355)
T d2bbkh_         199 HPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTA  278 (355)
T ss_dssp             CCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSC
T ss_pred             eccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCC
Confidence            346677778888889999999999876654221  111          11233457888888877654332         


Q ss_pred             -CcEEEeeCCCCCceEEecC--CCeEEEEeeCCC--EEEEEeCCCcEEEEECcCCC
Q 045566           62 -KTLKYWDTRQPNPVHTQQL--PDRCYALTVRYP--LMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        62 -~~i~~w~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~d~~v~~~d~~~~~  112 (112)
                       ..+.+||..+.+.+..+..  ....++|+|+++  .+++++.|+.|++||+++++
T Consensus       279 ~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~  334 (355)
T d2bbkh_         279 SRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE  334 (355)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             CCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCC
Confidence             4689999999887765543  345788999987  34566779999999999875

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.20  E-value=1e-10  Score=69.41  Aligned_cols=106  Identities=8%  Similarity=0.086  Sum_probs=79.5

Q ss_pred             eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe-----eccCCeeEEEEccCCCEEEEeeC---------CCcEEEee
Q 045566            3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA-----MHDAPIKEVAWIPEMNLLATGSW---------DKTLKYWD   68 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~---------~~~i~~w~   68 (112)
                      .+.|.++++++..  .++.+.+||..+++....+.     .+...+.++.|+||++.++.+..         ++.+.+||
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            4679998887764  46789999999888765443     34567899999999999887643         46788999


Q ss_pred             CCCCCceE--EecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           69 TRQPNPVH--TQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        69 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      +.+++...  ..........|+|+|+.++.. .++.+++|+...+
T Consensus        99 ~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g  142 (470)
T d2bgra1          99 LNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNL  142 (470)
T ss_dssp             TTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTS
T ss_pred             CCCCcccccccCCccccccccccCcceeeEe-ecccceEEECCCC
Confidence            98875332  223344678899999998886 4668999988765

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.20  E-value=7.7e-11  Score=67.94  Aligned_cols=107  Identities=7%  Similarity=-0.048  Sum_probs=75.4

Q ss_pred             eEEEcCCCCEEEEEc----------CCCcEEEEEcCCCCCcEEEeeccC-------CeeEEEEccCCCEEEEee-CCCcE
Q 045566            3 CSTWKDDGTTVFSGG----------CDKQVKMWPLLSGGQPVTVAMHDA-------PIKEVAWIPEMNLLATGS-WDKTL   64 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~----------~~~~v~~~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~~~~~-~~~~i   64 (112)
                      .++|+|+|+.+++.+          .++.|.+||..+.+....+..+..       ....++|+|||++++.+. .++.+
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v  148 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeE
Confidence            478999999888754          467899999999888777654322       234689999999887765 57899


Q ss_pred             EEeeCCCCCceEEecCCCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           65 KYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        65 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                      .+||+.+.+.......+............++..+.|+.+.++++.
T Consensus       149 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~  193 (368)
T d1mdah_         149 AGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLA  193 (368)
T ss_dssp             EEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECC
T ss_pred             EEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEec
Confidence            999999988777665543322222234455566667777766654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.14  E-value=3.9e-09  Score=60.44  Aligned_cols=108  Identities=12%  Similarity=0.009  Sum_probs=77.1

Q ss_pred             eEEEcCCCCEEEEEc----------CCCcEEEEEcCCCCCcEEEeeccCCe-------eEEEEccCCCEEEEe--eCCCc
Q 045566            3 CSTWKDDGTTVFSGG----------CDKQVKMWPLLSGGQPVTVAMHDAPI-------KEVAWIPEMNLLATG--SWDKT   63 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~----------~~~~v~~~~~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~~~~~--~~~~~   63 (112)
                      .++|+|||+++++++          .++.|.+||..+++....+..+....       ..+.|+++++.++..  ..++.
T Consensus        70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~  149 (373)
T d2madh_          70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCc
Confidence            578999999998874          35789999999988876665443322       457788877765444  34567


Q ss_pred             EEEeeCCCCCceEEecCCCeEEEEeeCCCEE-EEEeCCCcEEEEECcCC
Q 045566           64 LKYWDTRQPNPVHTQQLPDRCYALTVRYPLM-VVGTADRNLVVFNLQNP  111 (112)
Q Consensus        64 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~v~~~d~~~~  111 (112)
                      +.+|+....+....... .....++++++.+ ++.+.|+.+.+||...+
T Consensus       150 ~~~~~~~~~~~~~~~~~-~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~  197 (373)
T d2madh_         150 VGLVVQGGSSDDQLLSS-PTCYHIHPGAPSTFYLLCAQGGLAKTDHAGG  197 (373)
T ss_pred             eEEeeccCCeEEEEecc-ceeEEEecCCCcEEEEEcCCCeEEEEEcCCc
Confidence            88888877655444433 3456788887654 67788999999997654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.96  E-value=7.4e-09  Score=59.54  Aligned_cols=105  Identities=7%  Similarity=-0.170  Sum_probs=74.8

Q ss_pred             EEcCCCCEE--EE-EcCCC--cEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEee----------CCCcEEEeeC
Q 045566            5 TWKDDGTTV--FS-GGCDK--QVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGS----------WDKTLKYWDT   69 (112)
Q Consensus         5 ~~~~~~~~l--~~-~~~~~--~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------~~~~i~~w~~   69 (112)
                      +..++++..  +. ...++  .+.++|..+++.+.++..+...  .++|+|+++.++..+          .++.|.+||.
T Consensus        26 a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~  103 (368)
T d1mdah_          26 GPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDP  103 (368)
T ss_dssp             CCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECT
T ss_pred             ccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEEC
Confidence            445666643  22 33444  4667788888877777655544  588999999887653          3677999999


Q ss_pred             CCCCceEEecCC----------CeEEEEeeCCCEEEEEe-CCCcEEEEECcCC
Q 045566           70 RQPNPVHTQQLP----------DRCYALTVRYPLMVVGT-ADRNLVVFNLQNP  111 (112)
Q Consensus        70 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~-~d~~v~~~d~~~~  111 (112)
                      .+.+.+.....+          ...+.|+|++++++++. .++.+.+||+.++
T Consensus       104 ~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~  156 (368)
T d1mdah_         104 VTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGA  156 (368)
T ss_dssp             TTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTT
T ss_pred             CCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCC
Confidence            998877655321          23588999999998876 4689999998875

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.87  E-value=1.2e-07  Score=53.26  Aligned_cols=108  Identities=10%  Similarity=0.013  Sum_probs=77.9

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC--ceEEe-
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN--PVHTQ-   78 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~--~~~~~-   78 (112)
                      ..++++|+|+++++...+++|..++.. ++ ...+......+.+++|++++.++++...++.+..++.....  ..... 
T Consensus        31 e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~  108 (302)
T d2p4oa1          31 ENLASAPDGTIFVTNHEVGEIVSITPD-GN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLT  108 (302)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred             CCEEECCCCCEEEEeCCCCEEEEEeCC-CC-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccc
Confidence            468999999999999989998888744 33 34445566788999999999999988888888887764432  11111 


Q ss_pred             -cC--CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           79 -QL--PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        79 -~~--~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                       ..  ....+.+.++++++++-+.++.+..+|...+
T Consensus       109 ~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~  144 (302)
T d2p4oa1         109 LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP  144 (302)
T ss_dssp             CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred             cCCccccceeEEccCCCEEeeccccccceeeeccCC
Confidence             11  2256778888888877777888877776543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.54  E-value=5.3e-06  Score=47.78  Aligned_cols=97  Identities=15%  Similarity=0.066  Sum_probs=64.6

Q ss_pred             eeEEEcCCCCEEEEEcC-CCcEEEEEcCCCCCcEE---E--eeccCCeeEEEEccCCCEEEEe-eCCCcEEEeeCCCCCc
Q 045566            2 LCSTWKDDGTTVFSGGC-DKQVKMWPLLSGGQPVT---V--AMHDAPIKEVAWIPEMNLLATG-SWDKTLKYWDTRQPNP   74 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~-~~~v~~~~~~~~~~~~~---~--~~~~~~v~~~~~~~~~~~~~~~-~~~~~i~~w~~~~~~~   74 (112)
                      .++.|+|+|+++++++. ...|.+|+......+..   .  .........+.|+|+++++... ..++.|.+|+....+.
T Consensus       148 h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~  227 (365)
T d1jofa_         148 HGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATH  227 (365)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred             eEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCc
Confidence            47899999998887754 45788887654433221   1  1234567889999999977554 4688899999866542


Q ss_pred             e--E---EecC-----------------CCeEEEEeeCCCEEEEEe
Q 045566           75 V--H---TQQL-----------------PDRCYALTVRYPLMVVGT   98 (112)
Q Consensus        75 ~--~---~~~~-----------------~~~~~~~~~~~~~~~~~~   98 (112)
                      .  .   ....                 ....+.++|++++++++.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsn  273 (365)
T d1jofa_         228 MPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS  273 (365)
T ss_dssp             CEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred             eEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEc
Confidence            2  1   1110                 013578899999988874

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.46  E-value=1.3e-05  Score=44.39  Aligned_cols=106  Identities=12%  Similarity=0.054  Sum_probs=74.0

Q ss_pred             eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe--eccCCeeEEEEccCCCEEEEeeC-CCcEEEeeCCCCCceEEec
Q 045566            3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA--MHDAPIKEVAWIPEMNLLATGSW-DKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~-~~~i~~w~~~~~~~~~~~~   79 (112)
                      .+++.++++.+++....+.|.+|+. .++.+.++.  +.......+++.++++.+++-.. ++.|.+++. +++.+..+.
T Consensus       161 ~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~  238 (279)
T d1q7fa_         161 GVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALE  238 (279)
T ss_dssp             EEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEE
T ss_pred             eeeeccceeEEeeeccccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEe
Confidence            5678888888888888889999985 455555552  23445688999999998777544 446888885 455444432


Q ss_pred             C-----CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566           80 L-----PDRCYALTVRYPLMVVGTADRNLVVFNLQNP  111 (112)
Q Consensus        80 ~-----~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  111 (112)
                      .     ....+++.+++. +++.+.+..|++|...+.
T Consensus       239 ~~~~~~~p~~vav~~dG~-l~V~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         239 SKVKHAQCFDVALMDDGS-VVLASKDYRLYIYRYVQL  274 (279)
T ss_dssp             ESSCCSCEEEEEEETTTE-EEEEETTTEEEEEECSCC
T ss_pred             CCCCCCCEeEEEEeCCCc-EEEEeCCCeEEEEEeeee
Confidence            1     235678888886 455667889999987653

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.45  E-value=1.7e-05  Score=45.67  Aligned_cols=109  Identities=6%  Similarity=-0.013  Sum_probs=69.0

Q ss_pred             eeEEEcCCCCEEEEEc-CCCcEEEEEcCCCCCcEEEe--e-----------------ccCCeeEEEEccCCCEEEEeeC-
Q 045566            2 LCSTWKDDGTTVFSGG-CDKQVKMWPLLSGGQPVTVA--M-----------------HDAPIKEVAWIPEMNLLATGSW-   60 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~-~~~~v~~~~~~~~~~~~~~~--~-----------------~~~~v~~~~~~~~~~~~~~~~~-   60 (112)
                      ..++|+|+++++.+.. .+++|.+|+....+......  .                 .......+.++|+|++++++.. 
T Consensus       196 r~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~  275 (365)
T d1jofa_         196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA  275 (365)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred             EEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEccc
Confidence            3588999999886554 57889999987654332111  0                 1112457889999998877642 


Q ss_pred             -----CCcEEEeeCCCCCceEE----ec-----CCCeEEEEee-CCCEEEEEe-CCCcEEEEECcC
Q 045566           61 -----DKTLKYWDTRQPNPVHT----QQ-----LPDRCYALTV-RYPLMVVGT-ADRNLVVFNLQN  110 (112)
Q Consensus        61 -----~~~i~~w~~~~~~~~~~----~~-----~~~~~~~~~~-~~~~~~~~~-~d~~v~~~d~~~  110 (112)
                           ...|..|++.....+..    ..     .....+.++| +|++++++. .++.|.+|+++.
T Consensus       276 ~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         276 NKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             SSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             CCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence                 12366676654432211    11     1235688887 788887775 467899998653

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.40  E-value=1.7e-05  Score=43.48  Aligned_cols=107  Identities=9%  Similarity=-0.031  Sum_probs=72.5

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe-eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA-MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      ..++++++++.+++...++.+..++...... .... ........+++.+++.++++...++.|..++............
T Consensus       143 ~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~-~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~  221 (260)
T d1rwia_         143 DGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ-VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFT  221 (260)
T ss_dssp             CEEEECTTCCEEEEEGGGTEEEEECTTTCCE-EECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCC
T ss_pred             ceeeecCCCCEeeecccccccccccccccee-eeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccC
Confidence            4678889999888888888899998654332 2222 3334567899999999888888888888887654432211111


Q ss_pred             ---CCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           81 ---PDRCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        81 ---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                         ....+++++++.++++-..+++|+.++..
T Consensus       222 ~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         222 GLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             SCCCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             CCCCeEEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence               23568888888877766667777766543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.26  E-value=9.4e-06  Score=48.02  Aligned_cols=86  Identities=7%  Similarity=-0.026  Sum_probs=54.9

Q ss_pred             EEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEE-EeeCCCcEEEeeCCCCC-----------ceEEecC---CCeEEEE
Q 045566           23 KMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA-TGSWDKTLKYWDTRQPN-----------PVHTQQL---PDRCYAL   87 (112)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~i~~w~~~~~~-----------~~~~~~~---~~~~~~~   87 (112)
                      .+++....+.+..++.... ...+.++|+|++++ ++..++++.+||+.+..           .+.....   ......|
T Consensus       241 vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~f  319 (441)
T d1qnia2         241 VVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTF  319 (441)
T ss_dssp             EEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEE
T ss_pred             EEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCccccee
Confidence            3333333344455554443 47899999999765 56779999999985421           1111000   1123468


Q ss_pred             eeCCCEEEEEeCCCcEEEEECc
Q 045566           88 TVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        88 ~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                      ++++..+.+...|..|.-|++.
T Consensus       320 d~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         320 DGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             CSSSEEEEEETTTTEEEEEEHH
T ss_pred             cCCceEEEcccccceEEEeccc
Confidence            8888878888889999999864

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.26  E-value=7.6e-05  Score=44.16  Aligned_cols=108  Identities=6%  Similarity=-0.036  Sum_probs=67.1

Q ss_pred             eeEEEcCCCCE--EEEEcCCC-----------------cEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCC
Q 045566            2 LCSTWKDDGTT--VFSGGCDK-----------------QVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDK   62 (112)
Q Consensus         2 ~~~~~~~~~~~--l~~~~~~~-----------------~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~   62 (112)
                      ..++|+|+++.  ++..+++.                 .+..+|..+.+...++... .....+.++|+|++++..+.+.
T Consensus       119 hgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~ns  197 (441)
T d1qnia2         119 HGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNS  197 (441)
T ss_dssp             EEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCT
T ss_pred             cceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCC
Confidence            46789999884  44444332                 1234666666665555533 3467889999999887765432


Q ss_pred             -----------------------------------------cEEEeeCCCCCceEEecCC--CeEEEEeeCCCEEEE-Ee
Q 045566           63 -----------------------------------------TLKYWDTRQPNPVHTQQLP--DRCYALTVRYPLMVV-GT   98 (112)
Q Consensus        63 -----------------------------------------~i~~w~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~   98 (112)
                                                               .+.+++....+.+..+..+  ...+.++|+|+++++ +.
T Consensus       198 e~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~  277 (441)
T d1qnia2         198 ERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGK  277 (441)
T ss_dssp             TCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECT
T ss_pred             CceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCC
Confidence                                                     2333333333333333332  246889999998765 56


Q ss_pred             CCCcEEEEECcC
Q 045566           99 ADRNLVVFNLQN  110 (112)
Q Consensus        99 ~d~~v~~~d~~~  110 (112)
                      .++.|.+||+++
T Consensus       278 ~~~tvsv~d~~k  289 (441)
T d1qnia2         278 LSPTVSVIAIDK  289 (441)
T ss_dssp             TSSBEEEEEGGG
T ss_pred             cCCcEEEEEeeh
Confidence            688999999865

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.25  E-value=5.8e-05  Score=42.58  Aligned_cols=107  Identities=8%  Similarity=0.059  Sum_probs=70.5

Q ss_pred             eEEEcCCCC-----EEEEEcCCCcEEEEEcCCCCCcEE---E---ee-ccCCeeEEEEccCCCEEEEeeCCCcEEEeeCC
Q 045566            3 CSTWKDDGT-----TVFSGGCDKQVKMWPLLSGGQPVT---V---AM-HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR   70 (112)
Q Consensus         3 ~~~~~~~~~-----~l~~~~~~~~v~~~~~~~~~~~~~---~---~~-~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~   70 (112)
                      .++|+|++.     +.++-+..+.|..|++.....+..   +   .. .....-.+++.++|+++++....+.|..||..
T Consensus       176 Gi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~  255 (314)
T d1pjxa_         176 GIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD  255 (314)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             eeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCC
Confidence            467777653     344446678888888654433221   1   11 11234578899999998888888999999988


Q ss_pred             CCCceEEecC---CCeEEEEeeCCCEE-EEEeCCCcEEEEECc
Q 045566           71 QPNPVHTQQL---PDRCYALTVRYPLM-VVGTADRNLVVFNLQ  109 (112)
Q Consensus        71 ~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~d~~v~~~d~~  109 (112)
                      .++.+..+..   ....++|.++++.| ++.+.++.|.-.++.
T Consensus       256 ~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         256 GGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             CBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            7765554433   33578999888755 555667888777754

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.13  E-value=9.5e-05  Score=40.43  Aligned_cols=108  Identities=13%  Similarity=-0.037  Sum_probs=69.2

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC-
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL-   80 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~-   80 (112)
                      ..++++++++.+++-..+..+..++...................+++.+++..+++...++.+..++............ 
T Consensus       101 ~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~  180 (260)
T d1rwia_         101 EGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTD  180 (260)
T ss_dssp             EEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSS
T ss_pred             ccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccc
Confidence            4677888888777666666666666543322221112223457899999999888888888899998765543322111 


Q ss_pred             --CCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566           81 --PDRCYALTVRYPLMVVGTADRNLVVFNLQ  109 (112)
Q Consensus        81 --~~~~~~~~~~~~~~~~~~~d~~v~~~d~~  109 (112)
                        ....+++++++.++++....+.|..++..
T Consensus       181 ~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~  211 (260)
T d1rwia_         181 ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG  211 (260)
T ss_dssp             CCSEEEEEECTTCCEEEEETTTTEEEEECTT
T ss_pred             cCCCccceeeeeeeeeeeecCCCEEEEEeCC
Confidence              12457888888877777667778777643

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.97  E-value=0.00021  Score=38.85  Aligned_cols=93  Identities=12%  Similarity=0.149  Sum_probs=60.5

Q ss_pred             EEEcCC--CCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeC-C---C--cEEEeeCCCCCce
Q 045566            4 STWKDD--GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW-D---K--TLKYWDTRQPNPV   75 (112)
Q Consensus         4 ~~~~~~--~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~---~--~i~~w~~~~~~~~   75 (112)
                      ...+|+  |++++..+. +.|.+.|+..++. ..+..+........|+|||+.++-... +   .  .+.+.+..+++..
T Consensus         4 ~~~sPdi~G~~v~f~~~-~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~   81 (281)
T d1k32a2           4 LLLNPDIHGDRIIFVCC-DDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIK   81 (281)
T ss_dssp             CCEEEEEETTEEEEEET-TEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEE
T ss_pred             cccCCCCCCCEEEEEeC-CcEEEEECCCCCE-EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceE
Confidence            346788  998876654 5688889876664 456556677888999999998875432 2   1  3666666555433


Q ss_pred             EEec---------CCCeEEEEeeCCCEEEEEe
Q 045566           76 HTQQ---------LPDRCYALTVRYPLMVVGT   98 (112)
Q Consensus        76 ~~~~---------~~~~~~~~~~~~~~~~~~~   98 (112)
                      ..-.         .......|+|+++.++...
T Consensus        82 ~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          82 RITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             ECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             EeeecCCCccCccccccccccCCCCCEEEEEE
Confidence            2111         1234667888988777653

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=9.7e-05  Score=43.89  Aligned_cols=103  Identities=7%  Similarity=0.016  Sum_probs=66.4

Q ss_pred             eEEEcCCCCEEEEEc---------CCCcEEEEEcCCCCCcEEE--eeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCC
Q 045566            3 CSTWKDDGTTVFSGG---------CDKQVKMWPLLSGGQPVTV--AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ   71 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~---------~~~~v~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~   71 (112)
                      ...|+||+++++...         ..+...++|+.++......  ......+....|+|+|+.++-.. ++.+.+.+..+
T Consensus        65 ~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~  143 (465)
T d1xfda1          65 RYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVG  143 (465)
T ss_dssp             EEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSS
T ss_pred             eeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCC
Confidence            457999999887763         3467889998876653221  12234455678999999887654 56778777766


Q ss_pred             CCceEEecC---------------------CCeEEEEeeCCCEEEEEeCC-CcEEEE
Q 045566           72 PNPVHTQQL---------------------PDRCYALTVRYPLMVVGTAD-RNLVVF  106 (112)
Q Consensus        72 ~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~d-~~v~~~  106 (112)
                      +..++....                     ....+-|+|+|+.|+....| ..+..+
T Consensus       144 ~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~  200 (465)
T d1xfda1         144 KQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIM  200 (465)
T ss_dssp             SCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEE
T ss_pred             CceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEeccccccee
Confidence            554432211                     12466789999998887543 344444

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.89  E-value=0.00022  Score=40.18  Aligned_cols=69  Identities=6%  Similarity=0.140  Sum_probs=53.6

Q ss_pred             eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCC-EEEEeeCCCcEEEeeCCC
Q 045566            3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDTRQ   71 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~i~~w~~~~   71 (112)
                      .+++.++|+..++....+.|.+|+...++....+.......++++|.|+++ ++++...++.|.-.++..
T Consensus       230 GiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             eeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            467888999887777788999999877776666665556778999999886 567777788888877643

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.71  E-value=0.00021  Score=39.82  Aligned_cols=69  Identities=14%  Similarity=0.086  Sum_probs=51.9

Q ss_pred             CeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCce-EEecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           42 PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV-HTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        42 ~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      .+..++++|+|+++++...++.|..++....... .........+++.++++.+++...++.+..++...
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~   98 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVK   98 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecc
Confidence            4678999999999999988999998886544222 22233456788999999888887888887776543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.64  E-value=0.0011  Score=37.22  Aligned_cols=97  Identities=7%  Similarity=0.060  Sum_probs=65.9

Q ss_pred             eeEEEcCCCCEEEE-EcCCCcEEEEEcCCCCCcE-EE----e---eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCC
Q 045566            2 LCSTWKDDGTTVFS-GGCDKQVKMWPLLSGGQPV-TV----A---MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP   72 (112)
Q Consensus         2 ~~~~~~~~~~~l~~-~~~~~~v~~~~~~~~~~~~-~~----~---~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~   72 (112)
                      +.++|+|+++.|+. -+..+.|..|++....... ..    .   .....--.+++.++|+++++....+.|..+|. .+
T Consensus       180 nGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G  258 (319)
T d2dg1a1         180 NGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RG  258 (319)
T ss_dssp             EEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TS
T ss_pred             eeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CC
Confidence            35899999986644 4667889999876433221 11    1   11122457899999999998888999999996 56


Q ss_pred             CceEEecCC---------CeEEEEeeCCCEEEEEeC
Q 045566           73 NPVHTQQLP---------DRCYALTVRYPLMVVGTA   99 (112)
Q Consensus        73 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~   99 (112)
                      +.+..+..+         ..+++|.+....+++...
T Consensus       259 ~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         259 YPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             CEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             cEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            766666543         246778777776666543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=0.00025  Score=42.13  Aligned_cols=105  Identities=8%  Similarity=0.067  Sum_probs=68.0

Q ss_pred             EEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEee---ccCCeeEEEEccCCCEEEEeeC---------CCcEEEeeCCC
Q 045566            4 STWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAM---HDAPIKEVAWIPEMNLLATGSW---------DKTLKYWDTRQ   71 (112)
Q Consensus         4 ~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~---------~~~i~~w~~~~   71 (112)
                      ..|.+++.++. -..++.+.+|+..+++....+..   ..-.+....++||++.++....         .+...++|+.+
T Consensus        22 ~~W~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          22 AKWISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CCBSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             CEEeCCCcEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            35777776554 35578899999987776443432   2235677889999998776532         45678889987


Q ss_pred             CCceEEecC-----CCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566           72 PNPVHTQQL-----PDRCYALTVRYPLMVVGTADRNLVVFNLQN  110 (112)
Q Consensus        72 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  110 (112)
                      +........     ......|+|+|+.++-.. ++.+.+.+...
T Consensus       101 ~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~  143 (465)
T d1xfda1         101 GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVG  143 (465)
T ss_dssp             CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSS
T ss_pred             CceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCC
Confidence            764332211     123467899998887665 45666665543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.53  E-value=0.0015  Score=35.87  Aligned_cols=103  Identities=10%  Similarity=0.070  Sum_probs=69.8

Q ss_pred             eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEE--eeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566            3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTV--AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL   80 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~   80 (112)
                      .++..++++.+++....+.+.+++. .++.+..+  ..+......+++.+++..+++....+.|.+++... +.+..+..
T Consensus       118 ~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G-~~~~~~g~  195 (279)
T d1q7fa_         118 GVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-QYLRQIGG  195 (279)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-CEEEEESC
T ss_pred             eeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEeeeccccceeeeecCC-ceeeeecc
Confidence            4667777877777777777777774 34444443  23445677888999998888888889999999743 44444422


Q ss_pred             -----CCeEEEEeeCCCEEEEEeC-CCcEEEEE
Q 045566           81 -----PDRCYALTVRYPLMVVGTA-DRNLVVFN  107 (112)
Q Consensus        81 -----~~~~~~~~~~~~~~~~~~~-d~~v~~~d  107 (112)
                           ....++++++++.+++-.. ++.|.+|+
T Consensus       196 ~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~  228 (279)
T d1q7fa_         196 EGITNYPIGVGINSNGEILIADNHNNFNLTIFT  228 (279)
T ss_dssp             TTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC
T ss_pred             cccccCCcccccccCCeEEEEECCCCcEEEEEC
Confidence                 1256788899986666444 34588876

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=0.0016  Score=35.18  Aligned_cols=73  Identities=12%  Similarity=-0.026  Sum_probs=45.7

Q ss_pred             eEEEcCCCCEEEEEcCC-CcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeC---CCcEEEeeCCCCCce
Q 045566            3 CSTWKDDGTTVFSGGCD-KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW---DKTLKYWDTRQPNPV   75 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~i~~w~~~~~~~~   75 (112)
                      ...|+|+++.++..+.+ +...+|......................|+|+|+.++-...   ...+.++++......
T Consensus       175 ~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~  251 (269)
T d2hqsa1         175 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKA  251 (269)
T ss_dssp             EEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEE
T ss_pred             ccccccccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE
Confidence            45799999988776543 44444444333333344445556677889999998764432   345788888766543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.05  E-value=0.0074  Score=33.82  Aligned_cols=94  Identities=6%  Similarity=-0.113  Sum_probs=59.6

Q ss_pred             eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCC----CcEEEeeCCCCCceEEe
Q 045566            3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWD----KTLKYWDTRQPNPVHTQ   78 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~i~~w~~~~~~~~~~~   78 (112)
                      .++|+++|++.++-..++.|..++....+..............++++++|.++++...+    +.+...+..........
T Consensus        44 G~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~  123 (319)
T d2dg1a1          44 GLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDII  123 (319)
T ss_dssp             EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEE
T ss_pred             eCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeec
Confidence            57899999987877788889888876655444444455667899999999988765432    23444444443332222


Q ss_pred             cC-----CCeEEEEeeCCCEEEE
Q 045566           79 QL-----PDRCYALTVRYPLMVV   96 (112)
Q Consensus        79 ~~-----~~~~~~~~~~~~~~~~   96 (112)
                      ..     ....+.+.++|++.++
T Consensus       124 ~~~~~~~~~nd~~~d~~G~l~vt  146 (319)
T d2dg1a1         124 EDLSTAYCIDDMVFDSKGGFYFT  146 (319)
T ss_dssp             CSSSSCCCEEEEEECTTSCEEEE
T ss_pred             cCCCcccCCcceeEEeccceeec
Confidence            11     1234667777765544

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.98  E-value=0.0093  Score=33.83  Aligned_cols=106  Identities=13%  Similarity=0.122  Sum_probs=65.2

Q ss_pred             EcCCCCEEEEEcCC-----C------cEEEEEcCCCCCcE--EE-eeccCCeeEEEEccCCCEEEEeeCC-CcEEEeeCC
Q 045566            6 WKDDGTTVFSGGCD-----K------QVKMWPLLSGGQPV--TV-AMHDAPIKEVAWIPEMNLLATGSWD-KTLKYWDTR   70 (112)
Q Consensus         6 ~~~~~~~l~~~~~~-----~------~v~~~~~~~~~~~~--~~-~~~~~~v~~~~~~~~~~~~~~~~~~-~~i~~w~~~   70 (112)
                      ...+|+.++.|+.+     +      .+.+||..+++-..  .. ..+........+.+++..++.|+.+ ..+.+||..
T Consensus        27 ~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~  106 (387)
T d1k3ia3          27 EPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSS  106 (387)
T ss_dssp             ETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGG
T ss_pred             EeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCc
Confidence            33477777777632     1      26689987765322  22 2222233456788899999888765 579999987


Q ss_pred             CCCceEEecC----CCeEEEEeeCCCEEEEEeCC------CcEEEEECcCC
Q 045566           71 QPNPVHTQQL----PDRCYALTVRYPLMVVGTAD------RNLVVFNLQNP  111 (112)
Q Consensus        71 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~d------~~v~~~d~~~~  111 (112)
                      +......-..    .....+..+++..++.++.+      ..+.+||..+.
T Consensus       107 ~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3         107 SDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             GTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             cCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCC
Confidence            7654322111    12345666788888887653      35788887764

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.93  E-value=0.015  Score=35.41  Aligned_cols=73  Identities=16%  Similarity=0.066  Sum_probs=49.4

Q ss_pred             CcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCC----eEEEEeeCCCE
Q 045566           20 KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD----RCYALTVRYPL   93 (112)
Q Consensus        20 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~----~~~~~~~~~~~   93 (112)
                      |.+.-+|+.+++.....+... ++..-.....+.+++.|+.|+.++.+|.++++.+..+..+.    ..+.+..+|++
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~q  542 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            456677777777666554322 22211122346677789999999999999999998886643    35777788864

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.43  E-value=0.025  Score=31.33  Aligned_cols=96  Identities=16%  Similarity=0.153  Sum_probs=63.6

Q ss_pred             eeEEEcCCCCEE-EEEcCCCcEEEEEcCCCC-----CcEEE---eeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCC
Q 045566            2 LCSTWKDDGTTV-FSGGCDKQVKMWPLLSGG-----QPVTV---AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP   72 (112)
Q Consensus         2 ~~~~~~~~~~~l-~~~~~~~~v~~~~~~~~~-----~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~   72 (112)
                      +.++|+++++.+ ++-+..+.|..+++....     ....+   .......-.+++.++|.+.++.-..+.|..||. .+
T Consensus       151 Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G  229 (295)
T d2ghsa1         151 NSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DG  229 (295)
T ss_dssp             EEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TC
T ss_pred             ceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CC
Confidence            467899988865 455667888888864221     11111   223445678889999998888878888999996 56


Q ss_pred             CceEEecCC---CeEEEEe-eCCCEEEEEe
Q 045566           73 NPVHTQQLP---DRCYALT-VRYPLMVVGT   98 (112)
Q Consensus        73 ~~~~~~~~~---~~~~~~~-~~~~~~~~~~   98 (112)
                      +.+..+..+   .++++|. ++.+.|++.+
T Consensus       230 ~~~~~i~lP~~~~T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         230 NHIARYEVPGKQTTCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             CEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             cEeeEecCCCCceEEEEEeCCCCCEEEEEE
Confidence            666666554   3567785 5656555543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.43  E-value=0.035  Score=33.78  Aligned_cols=73  Identities=15%  Similarity=0.117  Sum_probs=45.7

Q ss_pred             CcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCC----eEEEEeeCCCE
Q 045566           20 KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD----RCYALTVRYPL   93 (112)
Q Consensus        20 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~----~~~~~~~~~~~   93 (112)
                      |.+.-+|+.+++...+.......... .....+.+++.++.|+.++.+|.++++.+..+..+.    ..+.+..+|++
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g-~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkq  520 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGG-TLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQ  520 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSB-CEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcc-eeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEE
Confidence            34566666666665544321111111 111135577789999999999999999998876543    34667778764

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.27  E-value=0.045  Score=33.15  Aligned_cols=73  Identities=7%  Similarity=0.039  Sum_probs=47.9

Q ss_pred             CcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCC----eEEEEeeCCCE
Q 045566           20 KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD----RCYALTVRYPL   93 (112)
Q Consensus        20 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~----~~~~~~~~~~~   93 (112)
                      +.+.-+|+.+++.....+.. .+...-.+.-.+.+++.++.|+.++.+|.++++.+..+..+.    ..+.+..+|++
T Consensus       438 G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkq  514 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQ  514 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             cceEEEeCCCCeEeeeccCC-CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            45667777777766554422 111111122245677789999999999999999998886543    34667778864

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.92  E-value=0.043  Score=29.29  Aligned_cols=78  Identities=13%  Similarity=0.129  Sum_probs=50.8

Q ss_pred             cEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCC---CcEEEeeCCCCCceEEe--cCCCeEEEEeeCCCEEE
Q 045566           21 QVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWD---KTLKYWDTRQPNPVHTQ--QLPDRCYALTVRYPLMV   95 (112)
Q Consensus        21 ~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~i~~w~~~~~~~~~~~--~~~~~~~~~~~~~~~~~   95 (112)
                      .|.+.|.. +.....+......+..-+|+|||+.++-....   ..+.+.+..........  ........++|++..++
T Consensus        20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~   98 (269)
T d2hqsa1          20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA   98 (269)
T ss_dssp             EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             EEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeee
Confidence            57777754 55555555567778899999999998765432   23666666655543333  23345677889998777


Q ss_pred             EEeC
Q 045566           96 VGTA   99 (112)
Q Consensus        96 ~~~~   99 (112)
                      ....
T Consensus        99 ~~~~  102 (269)
T d2hqsa1          99 FALS  102 (269)
T ss_dssp             EEEC
T ss_pred             Eeee
Confidence            6544

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.89  E-value=0.042  Score=29.37  Aligned_cols=63  Identities=10%  Similarity=-0.046  Sum_probs=39.3

Q ss_pred             EccC--CCEEEEeeCCCcEEEeeCCCCCceEEecC--CCeEEEEeeCCCEEEEEeC-CC-----cEEEEECcCC
Q 045566           48 WIPE--MNLLATGSWDKTLKYWDTRQPNPVHTQQL--PDRCYALTVRYPLMVVGTA-DR-----NLVVFNLQNP  111 (112)
Q Consensus        48 ~~~~--~~~~~~~~~~~~i~~w~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-d~-----~v~~~d~~~~  111 (112)
                      .+|+  |+.++-. .++.|.+.|+.+++.......  ......|+|+|+.|+.... ++     .+.+.+...+
T Consensus         6 ~sPdi~G~~v~f~-~~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g   78 (281)
T d1k32a2           6 LNPDIHGDRIIFV-CCDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG   78 (281)
T ss_dssp             EEEEEETTEEEEE-ETTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT
T ss_pred             cCCCCCCCEEEEE-eCCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCC
Confidence            4576  7776654 345688889988776543333  3456789999998875532 22     3556665443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.81  E-value=0.085  Score=31.95  Aligned_cols=51  Identities=18%  Similarity=0.238  Sum_probs=34.2

Q ss_pred             CcEEEeeCCCCCceEEecCC--CeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           62 KTLKYWDTRQPNPVHTQQLP--DRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        62 ~~i~~w~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      +.+.-+|+.+++.+..+...  ...-.+.-.+.+++.++.|+.++.+|.++|+
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe  490 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGE  490 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCc
Confidence            34666777777666554332  2222233356788889999999999999986

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.71  E-value=0.067  Score=32.49  Aligned_cols=73  Identities=11%  Similarity=0.068  Sum_probs=49.5

Q ss_pred             CcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCC----eEEEEeeCCCE
Q 045566           20 KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD----RCYALTVRYPL   93 (112)
Q Consensus        20 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~----~~~~~~~~~~~   93 (112)
                      |.+.-+|+.+++.....+... +...=.....+.++++|+.|+.++.+|.++++.+..+..+.    ..+.+..+|++
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQ  533 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQ  533 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             ccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            457778888888776654322 11111122256778889999999999999999998876543    34666677763

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.63  E-value=0.043  Score=33.60  Aligned_cols=73  Identities=15%  Similarity=0.116  Sum_probs=47.8

Q ss_pred             CcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCC----eEEEEeeCCCE
Q 045566           20 KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD----RCYALTVRYPL   93 (112)
Q Consensus        20 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~----~~~~~~~~~~~   93 (112)
                      |.+.-||+.+++........ .+...-.+...+.+++.|..|+.++.+|.++++.+..+..+.    ..+.+..+|++
T Consensus       453 G~l~A~D~~TG~~~W~~~~~-~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQ  529 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ  529 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             ceEEEEeCCCCceecccCCC-CCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEE
Confidence            45667777777765544321 111111122246677789999999999999999998886543    45667778764

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.60  E-value=0.11  Score=31.59  Aligned_cols=49  Identities=22%  Similarity=0.246  Sum_probs=31.5

Q ss_pred             EEEeeCCCCCceEEecCC--CeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           64 LKYWDTRQPNPVHTQQLP--DRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        64 i~~w~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      +.-||+.+++.+...+..  ...-.+.-.+..+++++.|+.++.+|.++|+
T Consensus       459 l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe  509 (573)
T d1kb0a2         459 LLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGE  509 (573)
T ss_dssp             EEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             EEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCc
Confidence            445566665555444322  1122233457788899999999999999986

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.28  E-value=0.14  Score=31.07  Aligned_cols=50  Identities=14%  Similarity=0.042  Sum_probs=33.1

Q ss_pred             cEEEeeCCCCCceEEecCCC--eEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           63 TLKYWDTRQPNPVHTQQLPD--RCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        63 ~i~~w~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      .+.-+|+.+++.+..+....  ..-.+.-.+..+++++.|+.++.+|.++||
T Consensus       445 ~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe  496 (571)
T d2ad6a1         445 QIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGK  496 (571)
T ss_dssp             EEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             cEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCc
Confidence            46666777777665543221  111223346678889999999999999986

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.25  E-value=0.13  Score=30.44  Aligned_cols=68  Identities=16%  Similarity=0.127  Sum_probs=42.2

Q ss_pred             CeeEEEEccCCCEEEEee-CCCcEEEeeCCCCC-----------ce-EEecC--CCeEEEEeeCCCEEEEEeCCCcEEEE
Q 045566           42 PIKEVAWIPEMNLLATGS-WDKTLKYWDTRQPN-----------PV-HTQQL--PDRCYALTVRYPLMVVGTADRNLVVF  106 (112)
Q Consensus        42 ~v~~~~~~~~~~~~~~~~-~~~~i~~w~~~~~~-----------~~-~~~~~--~~~~~~~~~~~~~~~~~~~d~~v~~~  106 (112)
                      ..+.+.++|||++++.++ .+.++.++|++.-.           .+ .....  .-..-+|+..|....+-=-|..|.-|
T Consensus       276 sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw  355 (459)
T d1fwxa2         276 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKW  355 (459)
T ss_dssp             SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEE
T ss_pred             CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCceEEEEeeccceEEEE
Confidence            347889999999876655 58999999986321           01 00111  11234565566444444468899999


Q ss_pred             ECc
Q 045566          107 NLQ  109 (112)
Q Consensus       107 d~~  109 (112)
                      ++.
T Consensus       356 ~~~  358 (459)
T d1fwxa2         356 NIE  358 (459)
T ss_dssp             EHH
T ss_pred             ecc
Confidence            864

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.01  E-value=0.12  Score=28.54  Aligned_cols=106  Identities=8%  Similarity=-0.060  Sum_probs=63.4

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEee----ccCCeeEEEEccCCCEEEEeeC----CCcEEEeeCCCCC
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAM----HDAPIKEVAWIPEMNLLATGSW----DKTLKYWDTRQPN   73 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~----~~~i~~w~~~~~~   73 (112)
                      .++++.++++++++ +.+ .+..+|..+++.......    ....++.+.+.|+|.+.++...    .+.-.+|.+..++
T Consensus        62 ~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~  139 (295)
T d2ghsa1          62 SALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK  139 (295)
T ss_dssp             EEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE
T ss_pred             EEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCc
Confidence            46777778777665 444 588899877764332221    1234778889999987776532    2234455554443


Q ss_pred             ceEEe--cCCCeEEEEeeCCCEEEEE-eCCCcEEEEECc
Q 045566           74 PVHTQ--QLPDRCYALTVRYPLMVVG-TADRNLVVFNLQ  109 (112)
Q Consensus        74 ~~~~~--~~~~~~~~~~~~~~~~~~~-~~d~~v~~~d~~  109 (112)
                      .....  ......+++++++..++.. +..+.|..+++.
T Consensus       140 ~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d  178 (295)
T d2ghsa1         140 VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLD  178 (295)
T ss_dssp             EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred             EEEEeeccCCcceeeecCCCceEEEeecccceeeEeeec
Confidence            22221  1223567888888866554 456778877753

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.39  E-value=0.19  Score=28.31  Aligned_cols=87  Identities=13%  Similarity=0.205  Sum_probs=58.2

Q ss_pred             CCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCCeEEEEee-CCCEEEE
Q 045566           18 CDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTV-RYPLMVV   96 (112)
Q Consensus        18 ~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   96 (112)
                      ...+|.+-|+..+..+...+.   .--+.-++|..+.++.-. ...+.++|+++.+++..+..+....-|.+ +.+.|+.
T Consensus        43 ~~~~VvIidl~n~~~~~Rrpi---~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~l  118 (327)
T d1utca2          43 EQAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVAL  118 (327)
T ss_dssp             TEEEEEEEETTSTTSCEEEEC---CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESSSSEEEE
T ss_pred             CCceEEEEECCCCCcceeccc---chhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecCCCEEEE
Confidence            345788889877665443321   113455788888776665 56899999999999988877666556655 3344444


Q ss_pred             EeCCCcEEEEECc
Q 045566           97 GTADRNLVVFNLQ  109 (112)
Q Consensus        97 ~~~d~~v~~~d~~  109 (112)
                      .+ +..|+-|++.
T Consensus       119 VT-~taVYHW~~~  130 (327)
T d1utca2         119 VT-DNAVYHWSME  130 (327)
T ss_dssp             EC-SSEEEEEESS
T ss_pred             Ec-CCceEEEccc
Confidence            43 4568888874

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.82  E-value=0.3  Score=28.34  Aligned_cols=92  Identities=12%  Similarity=0.146  Sum_probs=54.0

Q ss_pred             eEEEcCCCCEEEEE-----cCCCcEEEEEcCCCCCcE-EEeeccCCeeEEEEccCCCEEEEeeCC---------------
Q 045566            3 CSTWKDDGTTVFSG-----GCDKQVKMWPLLSGGQPV-TVAMHDAPIKEVAWIPEMNLLATGSWD---------------   61 (112)
Q Consensus         3 ~~~~~~~~~~l~~~-----~~~~~v~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~---------------   61 (112)
                      .++++|++++++.+     ++...++++|+.+++.+. .+..  .....+.|.+++..++-...+               
T Consensus       129 ~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~  206 (430)
T d1qfma1         129 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNL  206 (430)
T ss_dssp             EEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCC
T ss_pred             ceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEeccccCcccccccccCC
Confidence            46789999988754     233468999999887653 2221  122568899988877643322               


Q ss_pred             -CcEEEeeCCCCCc--eEEecCCC-----eEEEEeeCCCEEEE
Q 045566           62 -KTLKYWDTRQPNP--VHTQQLPD-----RCYALTVRYPLMVV   96 (112)
Q Consensus        62 -~~i~~w~~~~~~~--~~~~~~~~-----~~~~~~~~~~~~~~   96 (112)
                       ..+..+.+.+...  ...+....     .....+.++++++.
T Consensus       207 ~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i  249 (430)
T d1qfma1         207 HQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLL  249 (430)
T ss_dssp             CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred             cceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeE
Confidence             2466666665432  22222211     23345667777654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=93.41  E-value=0.32  Score=27.32  Aligned_cols=70  Identities=14%  Similarity=0.162  Sum_probs=45.3

Q ss_pred             eEEEcCCCCEEEEEcCC-CcEEEEEcCCCCCcE--EEeeccCCeeEEEEccCCCEEEEeeCC------CcEEEeeCCCCC
Q 045566            3 CSTWKDDGTTVFSGGCD-KQVKMWPLLSGGQPV--TVAMHDAPIKEVAWIPEMNLLATGSWD------KTLKYWDTRQPN   73 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~~-~~v~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~------~~i~~w~~~~~~   73 (112)
                      ..++.++++.++.|+.+ ..+.+||..+..-..  ... ....-...+..++++.++.++..      ..+.+||..+.+
T Consensus        80 ~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~-~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3          80 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQ-VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCS-SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             EEEEecCCcEEEeecCCCcceeEecCccCccccccccc-ccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            34677889998888655 578999976543211  111 11223456677788988887643      358889987654

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=93.20  E-value=0.43  Score=28.28  Aligned_cols=68  Identities=10%  Similarity=0.004  Sum_probs=45.3

Q ss_pred             eEEEcCCCCEEEEE-cCCCcEEEEEcCCC--------CCc---EEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCC
Q 045566            3 CSTWKDDGTTVFSG-GCDKQVKMWPLLSG--------GQP---VTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR   70 (112)
Q Consensus         3 ~~~~~~~~~~l~~~-~~~~~v~~~~~~~~--------~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~   70 (112)
                      .+..+|||++++++ ..+.++.++|++.-        .+.   .......-.-...+|..+|....+.--|..|.-|++.
T Consensus       279 GV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         279 GCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             CEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             ceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCceEEEEeeccceEEEEecc
Confidence            57889999988665 56889999998531        111   1111112233556788888666666779999999974

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.58  E-value=0.15  Score=31.00  Aligned_cols=51  Identities=18%  Similarity=0.159  Sum_probs=35.7

Q ss_pred             CcEEEeeCCCCCceEEecCCC--eEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           62 KTLKYWDTRQPNPVHTQQLPD--RCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        62 ~~i~~w~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      +.+.-+|+.+++.+..+..+.  ..-.+.-.+..++.++.|+.++.+|.++||
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe  518 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGK  518 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCc
Confidence            456677888877766554322  211234456788889999999999999986

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.63  E-value=0.32  Score=29.75  Aligned_cols=51  Identities=12%  Similarity=0.023  Sum_probs=34.4

Q ss_pred             CcEEEeeCCCCCceEEecC--CCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566           62 KTLKYWDTRQPNPVHTQQL--PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ  112 (112)
Q Consensus        62 ~~i~~w~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  112 (112)
                      +.+.-||+.+++.+.....  +...-.+.-.+..++.|+.|+.++.+|.++||
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe  505 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGD  505 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCc
Confidence            4566777777776654432  22222233356788889999999999999986

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.34  E-value=0.99  Score=26.50  Aligned_cols=50  Identities=16%  Similarity=0.165  Sum_probs=35.2

Q ss_pred             eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcE--EE------eeccCCeeEEEEccC
Q 045566            2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV--TV------AMHDAPIKEVAWIPE   51 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~--~~------~~~~~~v~~~~~~~~   51 (112)
                      .+++|.|+++.+++--..|.|++.+..+++...  .+      ..-+.....++++|+
T Consensus        30 ~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          30 HALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             eEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            478999999998887667899998866554322  11      112356788999984

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.23  E-value=0.87  Score=25.69  Aligned_cols=63  Identities=10%  Similarity=-0.056  Sum_probs=44.3

Q ss_pred             eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEE
Q 045566            3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLK   65 (112)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~   65 (112)
                      ++..++....+..-+.-|.+++||+.++..+..-+-..+.|...+-..+..-+++...+|.+.
T Consensus       260 amqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         260 AMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             EEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             EEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence            466777777788888889999999999998876665556665544444444555555666654

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.26  E-value=2.2  Score=24.63  Aligned_cols=55  Identities=18%  Similarity=0.149  Sum_probs=35.5

Q ss_pred             eeEEEEccCCCEEEEe-----eCCCcEEEeeCCCCCceEEe-c-CCCeEEEEeeCCCEEEEE
Q 045566           43 IKEVAWIPEMNLLATG-----SWDKTLKYWDTRQPNPVHTQ-Q-LPDRCYALTVRYPLMVVG   97 (112)
Q Consensus        43 v~~~~~~~~~~~~~~~-----~~~~~i~~w~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~   97 (112)
                      +....++|++++++-+     +....+++.|+.+++.+... . .....+.|.+++..++-.
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~  188 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYN  188 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEE
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEE
Confidence            3456788999987632     22345889999998765322 1 122457788888866544

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.56  E-value=2.1  Score=23.03  Aligned_cols=96  Identities=7%  Similarity=-0.085  Sum_probs=57.9

Q ss_pred             eeEEEcCCCCEEEEE-cCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566            2 LCSTWKDDGTTVFSG-GCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         2 ~~~~~~~~~~~l~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~~~~~~   79 (112)
                      ..++|++..+.++-. ..++.|...++........+......+..+++.. .+....+-...+.|.+.++..........
T Consensus        39 ~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~  118 (263)
T d1npea_          39 IGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD  118 (263)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred             EEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEec
Confidence            357788766655544 5567788877765544333333335678899986 44455566667889999887654332222


Q ss_pred             C---CCeEEEEeeCCCEEEEE
Q 045566           80 L---PDRCYALTVRYPLMVVG   97 (112)
Q Consensus        80 ~---~~~~~~~~~~~~~~~~~   97 (112)
                      .   ....++++|...+++..
T Consensus       119 ~~l~~p~~l~vdp~~g~ly~t  139 (263)
T d1npea_         119 TGLVNPRGIVTDPVRGNLYWT  139 (263)
T ss_dssp             SSCSSEEEEEEETTTTEEEEE
T ss_pred             ccccCCcEEEEecccCcEEEe
Confidence            1   23566777765555443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=81.03  E-value=3.1  Score=23.36  Aligned_cols=92  Identities=7%  Similarity=0.090  Sum_probs=50.2

Q ss_pred             CCcEEEEEcCCCCCcEE----Ee-eccCCeeEEEEccCCCEEEEeeC-----------------CCcEEEeeCCCCCceE
Q 045566           19 DKQVKMWPLLSGGQPVT----VA-MHDAPIKEVAWIPEMNLLATGSW-----------------DKTLKYWDTRQPNPVH   76 (112)
Q Consensus        19 ~~~v~~~~~~~~~~~~~----~~-~~~~~v~~~~~~~~~~~~~~~~~-----------------~~~i~~w~~~~~~~~~   76 (112)
                      ..+|.++++........    +. ......+.+....++.+++|-..                 .+.+..|+....+.+.
T Consensus       123 ~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~  202 (340)
T d1v04a_         123 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVA  202 (340)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEE
T ss_pred             CceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEc
Confidence            45677776644332211    11 11234678888888887777211                 1223334433222222


Q ss_pred             EecCCCeEEEEeeCCCEEEEEe-CCCcEEEEECcC
Q 045566           77 TQQLPDRCYALTVRYPLMVVGT-ADRNLVVFNLQN  110 (112)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~-~d~~v~~~d~~~  110 (112)
                      .--.-.+.++++++++.++++. ..++|+.|++..
T Consensus       203 ~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~  237 (340)
T d1v04a_         203 EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  237 (340)
T ss_dssp             EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             CCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCC
Confidence            2222346788999988776654 467788888754

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.08  E-value=2.9  Score=22.42  Aligned_cols=107  Identities=5%  Similarity=-0.146  Sum_probs=60.1

Q ss_pred             eEEEcCCCCEE-EEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccC-CCEEEEee-CCCcEEEeeCCCCCceEEec
Q 045566            3 CSTWKDDGTTV-FSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPE-MNLLATGS-WDKTLKYWDTRQPNPVHTQQ   79 (112)
Q Consensus         3 ~~~~~~~~~~l-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~-~~~~i~~w~~~~~~~~~~~~   79 (112)
                      .+++.+.+..| ++-...+.|.+.++........+.........++++|. +..+.+-. ..+.|.-.++..........
T Consensus        81 glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~  160 (266)
T d1ijqa1          81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  160 (266)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred             eEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccc
Confidence            56777645444 44456678899987655444444444456788999884 44444432 23456666665443332222


Q ss_pred             C---CCeEEEEeeCCCEEEEE-eCCCcEEEEECc
Q 045566           80 L---PDRCYALTVRYPLMVVG-TADRNLVVFNLQ  109 (112)
Q Consensus        80 ~---~~~~~~~~~~~~~~~~~-~~d~~v~~~d~~  109 (112)
                      .   ....+++++.+..++.+ ...+.|...|+.
T Consensus       161 ~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~d  194 (266)
T d1ijqa1         161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  194 (266)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cccceeeEEEeeccccEEEEecCCcCEEEEEECC
Confidence            2   12567777766655555 334566665553