Citrus Sinensis ID: 045567

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70----
Protein Sequence
MAGPDQAAQHSTEVLHQRKSLGQCPLKMALTGFAFAGIIGYFVLYSKKKPEASALDVAKVTAGVARPENTHPRN
Secondary Structure (PSIPRED)
ccccHHHHccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
magpdqaaqHSTEVLHQrkslgqcplkmALTGFAFAGIIGYFVLYskkkpeasalDVAKVTagvarpenthprn
Flexible Loop (DISEMBL)
magpdqaaqhSTEVLHQRKSLGQCPLKMALTGFAFAGIIGYFVLYSKKKPEASALDVakvtagvarpenthprn
Low Complexity Region (SEG)
MAGPDQAAQHSTEVLHQRKSLGQCPLKMALTGFAFAGIIGYFVLYSKKKPEASALDVAKVTAGVARPENTHPRN
Disordered region (IsUnstruct)
********************LGQCPLKMALTGFAFAGIIGYFVLYSK***************************
Disordered Region (DISOPRED)
*****************RKSLGQCPLKMALTGFAFAGIIGYFVLYSKKKP****LDVAKV**************
Disordered Region (DISEMBL)
*****************RKSLGQCPLKMALTGFAFAGIIGYFVLYSKKKPEASALDVAKVTAGVA*********
Disordered Region (DISPRO)
*************VLHQRKSLGQCPLKMALTGFAFAGIIGYFVLYSKKKP****L*******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAGPDQAAQHSTEVLHQRKSLGQCPLKMALTGFAFAGIIGYFVLYSKKKPEASALDVAKVTAGVARPENTHPRN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	74
224088286	74	predicted protein [Populus trichocarpa]	1.0	1.0	0.756	3e-25
255577005	74	conserved hypothetical protein [Ricinus	0.972	0.972	0.75	3e-24
224143941	74	predicted protein [Populus trichocarpa]	1.0	1.0	0.702	5e-24
357480055	81	hypothetical protein MTR_4g130810 [Medic	0.878	0.802	0.692	4e-20
116830195	76	unknown [Arabidopsis thaliana]	1.0	0.973	0.693	8e-20
3513728	75	F8M12.18 gene product [Arabidopsis thali	1.0	0.986	0.693	8e-20
297809317	75	F8M12.18 protein [Arabidopsis lyrata sub	1.0	0.986	0.68	1e-19
4539364	169	putative protein [Arabidopsis thaliana]	1.0	0.437	0.693	2e-19
147794338	773	hypothetical protein VITISV_019164 [Viti	0.918	0.087	0.676	5e-19
357437175	107	hypothetical protein MTR_1g014110 [Medic	0.810	0.560	0.65	2e-13

>gi|224088286|ref|XP_002308406.1| predicted protein [Populus trichocarpa] gi|222854382|gb|EEE91929.1| predicted protein [Populus trichocarpa]

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 56/74 (75%), Positives = 60/74 (81%)

Query: 1  MAGPDQAAQHSTEVLHQRKSLGQCPLKMALTGFAFAGIIGYFVLYSKKKPEASALDVAKV 60
          MAG DQAA+HSTEVLHQR+ L  CPLK A+ G A    IGYFVLY+KKKPEASALDVAKV
Sbjct: 1  MAGSDQAARHSTEVLHQRRKLSLCPLKTAIGGVAVVAAIGYFVLYTKKKPEASALDVAKV 60

Query: 61 TAGVARPENTHPRN 74
          T GVA P NTHPRN
Sbjct: 61 TVGVANPANTHPRN 74

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577005|ref|XP_002529387.1| conserved hypothetical protein [Ricinus communis] gi|223531135|gb|EEF32983.1| conserved hypothetical protein [Ricinus communis]

 Score =  115 bits (288), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/72 (75%), Positives = 59/72 (81%)

Query: 1  MAGPDQAAQHSTEVLHQRKSLGQCPLKMALTGFAFAGIIGYFVLYSKKKPEASALDVAKV 60
          MAGPDQAAQH+TEVLHQRK+L +CP KMA+ G      IGYFVLYS KKPEASALDVAKV
Sbjct: 1  MAGPDQAAQHTTEVLHQRKNLSKCPAKMAVGGVICVATIGYFVLYSNKKPEASALDVAKV 60

Query: 61 TAGVARPENTHP 72
            GV+RPENT P
Sbjct: 61 ATGVSRPENTRP 72

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143941|ref|XP_002325130.1| predicted protein [Populus trichocarpa] gi|222866564|gb|EEF03695.1| predicted protein [Populus trichocarpa]

 Score =  115 bits (287), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 52/74 (70%), Positives = 59/74 (79%)

Query: 1  MAGPDQAAQHSTEVLHQRKSLGQCPLKMALTGFAFAGIIGYFVLYSKKKPEASALDVAKV 60
          MAG DQAAQHSTEVLH R+ L  CP+KMA+ G A    +GYFVLYSKK+PE SALDV+KV
Sbjct: 1  MAGSDQAAQHSTEVLHHRRKLSLCPMKMAIGGVALVATLGYFVLYSKKQPEVSALDVSKV 60

Query: 61 TAGVARPENTHPRN 74
          TAG+A P NTH RN
Sbjct: 61 TAGIADPANTHTRN 74

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357480055|ref|XP_003610313.1| hypothetical protein MTR_4g130810 [Medicago truncatula] gi|355511368|gb|AES92510.1| hypothetical protein MTR_4g130810 [Medicago truncatula]

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 45/65 (69%), Positives = 55/65 (84%)

Query: 10 HSTEVLHQRKSLGQCPLKMALTGFAFAGIIGYFVLYSKKKPEASALDVAKVTAGVARPEN 69
          HST+VLHQRK +  CP++MA+ GFA   ++GYFVLY+ KKPEASALDVAKV+ G+A PEN
Sbjct: 17 HSTDVLHQRKKVPFCPMRMAIGGFAAISVLGYFVLYANKKPEASALDVAKVSTGMAHPEN 76

Query: 70 THPRN 74
          THPRN
Sbjct: 77 THPRN 81

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116830195|gb|ABK28055.1| unknown [Arabidopsis thaliana]

 Score =  100 bits (250), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 52/75 (69%), Positives = 56/75 (74%), Gaps = 1/75 (1%)

Query: 1  MAGPDQAAQHSTEVLHQRKSLGQCPLKMALTGFAFAGIIGYFVLYSKKKPEASALDVAKV 60
          MAGP QAA+ S+EVL QRKSLG CPL+ A  G    G IGY VLYSKKKPEASA DVAKV
Sbjct: 1  MAGPAQAAKQSSEVLGQRKSLGICPLRAAAVGAVIIGGIGYVVLYSKKKPEASAGDVAKV 60

Query: 61 TAGV-ARPENTHPRN 74
           +GV   PENT PRN
Sbjct: 61 MSGVGGTPENTRPRN 75

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3513728|gb|AAC33944.1| F8M12.18 gene product [Arabidopsis thaliana] gi|98962111|gb|ABF59385.1| unknown protein [Arabidopsis thaliana]

 Score =  100 bits (250), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 52/75 (69%), Positives = 56/75 (74%), Gaps = 1/75 (1%)

Query: 1  MAGPDQAAQHSTEVLHQRKSLGQCPLKMALTGFAFAGIIGYFVLYSKKKPEASALDVAKV 60
          MAGP QAA+ S+EVL QRKSLG CPL+ A  G    G IGY VLYSKKKPEASA DVAKV
Sbjct: 1  MAGPAQAAKQSSEVLGQRKSLGICPLRAAAVGAVIIGGIGYVVLYSKKKPEASAGDVAKV 60

Query: 61 TAGV-ARPENTHPRN 74
           +GV   PENT PRN
Sbjct: 61 MSGVGGTPENTRPRN 75

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809317|ref|XP_002872542.1| F8M12.18 protein [Arabidopsis lyrata subsp. lyrata] gi|297318379|gb|EFH48801.1| F8M12.18 protein [Arabidopsis lyrata subsp. lyrata]

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/75 (68%), Positives = 56/75 (74%), Gaps = 1/75 (1%)

Query: 1  MAGPDQAAQHSTEVLHQRKSLGQCPLKMALTGFAFAGIIGYFVLYSKKKPEASALDVAKV 60
          MAGP QAA+ S+EVL QRKSLG CPL+ A  G    G +GY VLYSKKKPEASA DVAKV
Sbjct: 1  MAGPGQAAKQSSEVLGQRKSLGICPLRAAAVGAVIIGGLGYMVLYSKKKPEASAGDVAKV 60

Query: 61 TAGV-ARPENTHPRN 74
           +GV   PENT PRN
Sbjct: 61 MSGVGGTPENTRPRN 75

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4539364|emb|CAB40058.1| putative protein [Arabidopsis thaliana] gi|7267788|emb|CAB81191.1| putative protein [Arabidopsis thaliana]

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/75 (69%), Positives = 56/75 (74%), Gaps = 1/75 (1%)

Query: 1   MAGPDQAAQHSTEVLHQRKSLGQCPLKMALTGFAFAGIIGYFVLYSKKKPEASALDVAKV 60
           MAGP QAA+ S+EVL QRKSLG CPL+ A  G    G IGY VLYSKKKPEASA DVAKV
Sbjct: 95  MAGPAQAAKQSSEVLGQRKSLGICPLRAAAVGAVIIGGIGYVVLYSKKKPEASAGDVAKV 154

Query: 61  TAGV-ARPENTHPRN 74
            +GV   PENT PRN
Sbjct: 155 MSGVGGTPENTRPRN 169

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147794338|emb|CAN76000.1| hypothetical protein VITISV_019164 [Vitis vinifera]

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 46/68 (67%), Positives = 52/68 (76%)

Query: 7   AAQHSTEVLHQRKSLGQCPLKMALTGFAFAGIIGYFVLYSKKKPEASALDVAKVTAGVAR 66
           A QHSTEVLHQR  L   PLK+A+ G AF   + YF LY+KKKPEASALDVAKV AGV+ 
Sbjct: 706 AGQHSTEVLHQRSKLPHSPLKLAIGGLAFVAALSYFTLYTKKKPEASALDVAKVVAGVST 765

Query: 67  PENTHPRN 74
           PE+THPR 
Sbjct: 766 PEDTHPRK 773

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357437175|ref|XP_003588863.1| hypothetical protein MTR_1g014110 [Medicago truncatula] gi|355477911|gb|AES59114.1| hypothetical protein MTR_1g014110 [Medicago truncatula]

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/60 (65%), Positives = 44/60 (73%)

Query: 14  VLHQRKSLGQCPLKMALTGFAFAGIIGYFVLYSKKKPEASALDVAKVTAGVARPENTHPR 73
           VLHQRKSL      M + G      IGY VLY+KKKPEASA+DVAKVTAGVA PE+THP+
Sbjct: 47  VLHQRKSLPYNFTTMTIGGLLITAAIGYTVLYTKKKPEASAVDVAKVTAGVANPEDTHPK 106

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	74
TAIR|locus:2116762	100	AT4G31830 "AT4G31830" [Arabido	0.810	0.6	0.583	1.3e-13

TAIR|locus:2116762 AT4G31830 "AT4G31830" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 35/60 (58%), Positives = 43/60 (71%)

Query:    14 VLHQRKSLGQCPLKMALTGFAFAGIIGYFVLYSKKKPEASALDVAKVTAGVARPENTHPR 73
             VLHQR++L      MAL G A +G I Y V+Y+KKKPEA+A DVAK   G A+PE+THPR
Sbjct:    40 VLHQRRNLPYSYTTMALAGLAISGAIMYTVMYAKKKPEATATDVAKAATGTAKPEDTHPR 99


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.131   0.381    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       74        74   0.00091  102 3  11 22  0.36    29
                                                     29  0.46    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  462 (49 KB)
  Total size of DFA:  82 KB (2065 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.89u 0.12s 8.01t   Elapsed:  00:00:01
  Total cpu time:  7.89u 0.12s 8.01t   Elapsed:  00:00:01
  Start:  Thu May  9 18:37:20 2013   End:  Thu May  9 18:37:21 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00061299 hypothetical protein (74 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	74
COG5522	236	Predicted integral membrane protein [Function unkn	91.31
PRK09400	61	secE preprotein translocase subunit SecE; Reviewed	88.61
TIGR00327	61	secE_euk_arch protein translocase SEC61 complex ga	87.56
PTZ00478	81	Sec superfamily; Provisional	81.23

>COG5522 Predicted integral membrane protein [Function unknown]

Probab=91.31  E-value=0.24  Score=38.27  Aligned_cols=44  Identities=41%  Similarity=0.596  Sum_probs=39.6

Q ss_pred             hhhccccCCCChhHHHHHhHHHHhhhhhhe--------eeeccCCC-cchhhh
Q 045567           14 VLHQRKSLGQCPLKMALTGFAFAGIIGYFV--------LYSKKKPE-ASALDV   57 (74)
Q Consensus        14 VLHQR~~Lp~~p~~mai~G~~i~~~igY~V--------LY~kKKPE-asA~DV   57 (74)
                      .+|-|-|...+-.-|++.++.+-|++.||+        ||-.|+|| +|-+||
T Consensus       144 ~vhfreRpgksgl~~svl~~~~lg~~~lfinrrLGtNYlylsk~P~~~sildv  196 (236)
T COG5522         144 IVHFRERPGKSGLVMSVLVAISLGIMCLFINRRLGTNYLYLSKEPESASILDV  196 (236)
T ss_pred             HHHhccCCCccchhHHHHHHHHHHHHHHHHHHHhcCceeEeecCCCchhHHHH
Confidence            478999999999999999999999999886        99999999 567776

>PRK09400 secE preprotein translocase subunit SecE; Reviewed

Probab=88.61  E-value=0.32  Score=30.03  Aligned_cols=18  Identities=28%  Similarity=0.654  Sum_probs=15.5

Q ss_pred             hHHHHHhHHHHhhhhhhe
Q 045567           26 LKMALTGFAFAGIIGYFV   43 (74)
Q Consensus        26 ~~mai~G~~i~~~igY~V   43 (74)
                      .+.+..|++|+|+|||++
T Consensus        36 a~~~~iG~~i~G~iGf~I   53 (61)
T PRK09400         36 AKVTGLGILLIGLIGFII   53 (61)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            356788999999999986

>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic

Probab=87.56  E-value=0.4  Score=29.81  Aligned_cols=18  Identities=39%  Similarity=0.744  Sum_probs=15.5

Q ss_pred             hHHHHHhHHHHhhhhhhe
Q 045567           26 LKMALTGFAFAGIIGYFV   43 (74)
Q Consensus        26 ~~mai~G~~i~~~igY~V   43 (74)
                      .+.+..|++++|.|||++
T Consensus        32 ak~t~iG~~i~G~IGf~I   49 (61)
T TIGR00327        32 AKVTGIGIIIVGIIGYII   49 (61)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            356788999999999986

This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.

>PTZ00478 Sec superfamily; Provisional

Probab=81.23  E-value=1.1  Score=29.51  Aligned_cols=17  Identities=35%  Similarity=0.657  Sum_probs=14.4

Q ss_pred             HHHHHhHHHHhhhhhhe
Q 045567           27 KMALTGFAFAGIIGYFV   43 (74)
Q Consensus        27 ~mai~G~~i~~~igY~V   43 (74)
                      +....||+|.|.|||+|
T Consensus        50 kat~iGf~imG~IGy~I   66 (81)
T PTZ00478         50 YACSVGFFIMGFIGYSI   66 (81)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            44567999999999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	74
2ww9_B	80	Protein transport protein SSS1; ribonucleoprotein,	89.69
1rh5_B	74	Preprotein translocase SECE subunit; protein trans	89.42
3mp7_B	61	Preprotein translocase subunit SECE; protein trans	88.32
2wwb_B	68	SEC61gamma, protein transport protein SEC61 subuni	88.26

>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B

Probab=89.69  E-value=0.15  Score=32.46  Aligned_cols=18  Identities=44%  Similarity=0.737  Sum_probs=15.7

Q ss_pred             hHHHHHhHHHHhhhhhhe
Q 045567           26 LKMALTGFAFAGIIGYFV   43 (74)
Q Consensus        26 ~~mai~G~~i~~~igY~V   43 (74)
                      .+.+..||+|+|.|||++
T Consensus        51 ak~t~iG~~imG~IGfiI   68 (80)
T 2ww9_B           51 VKAVGIGFIAVGIIGYAI   68 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            457789999999999985

>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B

Probab=89.42  E-value=0.16  Score=31.65  Aligned_cols=18  Identities=39%  Similarity=0.820  Sum_probs=15.7

Q ss_pred             hHHHHHhHHHHhhhhhhe
Q 045567           26 LKMALTGFAFAGIIGYFV   43 (74)
Q Consensus        26 ~~mai~G~~i~~~igY~V   43 (74)
                      .+.+..||+|+|+|||++
T Consensus        38 ak~~~iG~~imG~IGfiI   55 (74)
T 1rh5_B           38 AKVTALGISLLGIIGYII   55 (74)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            457789999999999986

>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}

Probab=88.32  E-value=0.22  Score=29.93  Aligned_cols=18  Identities=28%  Similarity=0.599  Sum_probs=15.6

Q ss_pred             hHHHHHhHHHHhhhhhhe
Q 045567           26 LKMALTGFAFAGIIGYFV   43 (74)
Q Consensus        26 ~~mai~G~~i~~~igY~V   43 (74)
                      .+.+..|++|+|+|||++
T Consensus        34 ak~~~iG~~i~G~iGf~I   51 (61)
T 3mp7_B           34 AKITGLGIILIGLIGMLI   51 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            456789999999999986

>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}

Probab=88.26  E-value=0.15  Score=31.36  Aligned_cols=18  Identities=44%  Similarity=0.842  Sum_probs=15.4

Q ss_pred             hHHHHHhHHHHhhhhhhe
Q 045567           26 LKMALTGFAFAGIIGYFV   43 (74)
Q Consensus        26 ~~mai~G~~i~~~igY~V   43 (74)
                      .+.+..||+++|.|||++
T Consensus        37 ak~~~iG~~i~G~IGf~I   54 (68)
T 2wwb_B           37 AMATAIGFAIMGFIGFFV   54 (68)
T ss_dssp             HHHSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            456778999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00