Citrus Sinensis ID: 045607

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140---
Protein Sequence
MPGNTQTRIVNSYMDCTGIVAEDPVQLHISSNFFLGDAFIVLKSINGVAKGNNGVEIVKLDQSNGAFKQIDKVFVDRNTVQGMNTRATIARASMQGNGNHGRASGSSFPNHALRNVSENRVVIESDVAVPASVFVTVDQGMTS
Secondary Structure (PSIPRED)
cccccEEEEEEEEEccEEEEEEccEEEEEEcEEEEEccEEEEEEEccEEEccccEEEEEEccccccccEEEEEEEEccccccEEEEEEEEEEEEcccccEEEEcccccccccEEEEcccEEEEEEccEEcEEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEccEEcccEEEEcccEEEEEEcccEcccHEEEEEEEccEEEcccccEEEEEEcccccccEEcEEEEEcccccccEEEEEEEEEEEcccccEEEEccccccccEEEEccccEEEEEccccEEEEEEEEEEccccc
Coil and Loop (DISEMBL)
MPGNTQTRIVNSYMDctgivaedpvqlhissnfflGDAFIVLKSIngvakgnnGVEIVKldqsngafkqIDKVFvdrntvqgmnTRATIARASmqgngnhgrasgssfpnhalrnvsenrvviesdvavpASVFVTVDQGMTS
Flexible Loop (DISEMBL)
MPGNTQTRIVNSYMDCTGIVAEDPVQLHISSNFFLGDAFIVLKSINGVAKGNNGVEIVKldqsngafkqidKVFVDRNTVQGMNTRATIARASMQGNGNHGRASGSSFPNHALRNVSENRvviesdvavpasvfvtvdqgmts
Low Complexity Region (SEG)
MPGNTQTRIVNSYMDCTGIVAEDPVQLHISSNFFLGDAFIVLKSINGVAKGNNGVEIVKLDQSNGAFKQIDKVFVDRNTVQGMNTRATIARASMQGNGNHGRASGSSFPNHALRNVSENRVVIESDVAVPASVFVTVDQGMTS
Disordered region (IsUnstruct)
*******RIVNSYMDCTGIVAEDPVQLHISSNFFLGDAFIVLKSINGVAKGNNGVEIVKLDQSNGAFKQIDKVFVDRNTVQGM************************************RVVIESDVAVPASVFVTV******
Disordered Region (DISOPRED)
***NTQTRIVNSYMDCTGIVAEDPVQLHISSNFFLGDAFIVLKSINGVAKGNNGVEIVKLDQSNGAFKQIDKVFVDRNTVQGMNTRATI*******NGNHGRASGSSFPNHALRNVSENRVVIESDVAVPASVFVTVDQG***
Disordered Region (DISEMBL)
MPGNTQTRIVNSYMDCTGIVAEDPVQLHISSNFFLGDAFIVLKSINGVAKGNNGVEIVKLDQSNGAFKQIDKVFVDRNTVQGMNTRATIARASMQ*********GSSFPNHALRNVSENRVVIESDVAVPASVFVTVDQGMTS
Disordered Region (DISPRO)
**GNTQTRIVNSYMDCTGIVAEDPVQLHISSNFFLGDAFIVLKSINGVAKGNNGVEIVKLDQSNGAFKQIDKVFVDRNTVQGMNTRATIARASMQGNGNHGRASGSSFPNHALRNVSENRVVIESDVAVPASVFVTVDQG***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPGNTQTRIVNSYMDCTGIVAEDPVQLHISSNFFLGDAFIVLKSINGVAKGNNGVEIVKLDQSNGAFKQIDKVFVDRNTVQGMNTRATIARASMQGNGNHGRASGSSFPNHALRNVSENRVVIESDVAVPASVFVTVDQGMTS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	143	2.2.26 [Sep-21-2011]
O49432	481	Polygalacturonase QRT3 OS	yes	no	0.986	0.293	0.494	3e-37

>sp|O49432|QRT3_ARATH Polygalacturonase QRT3 OS=Arabidopsis thaliana GN=QRT3 PE=2 SV=1

 Score =  153 bits (386), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 86/174 (49%), Positives = 110/174 (63%), Gaps = 33/174 (18%)

Query: 1   MPGNTQTRIVNSYMDCTGIVAEDPVQLHISSNFFLGDAFIVLKSINGVAKG--------- 51
           +PG TQ RIVNSY+D TGIVAEDPVQL IS  FFLGDAFI+LKSI G  +G         
Sbjct: 308 LPGLTQNRIVNSYLDYTGIVAEDPVQLQISGTFFLGDAFILLKSIAGYIRGVSIVDNMFS 367

Query: 52  --NNGVEIVKLDQSNGAFKQIDKVFVDRNTVQGMNTRATIARASMQGNG----------- 98
              +GV+IV+LDQ N AF  + +V VDRN+V GM  ++T+AR S+ GNG           
Sbjct: 368 GSGHGVQIVQLDQRNTAFDDVGQVVVDRNSVNGMVEKSTVARGSVDGNGTSWTVDFNPVL 427

Query: 99  ------NHGR-----ASGSSFPNHALRNVSENRVVIESDVAVPASVFVTVDQGM 141
                 NH +     +    FP HALRNVS+NRVV+E++  V  +V+VTV+QG+
Sbjct: 428 LFPDLINHVQYTLVASEAGVFPLHALRNVSDNRVVVETNAPVTGTVYVTVNQGV 481

Polygalacturonase required for degrading the pollen mother cell wall during microspore development.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
224071045	489	predicted protein [Populus trichocarpa]	1.0	0.292	0.577	7e-47
224088096	496	predicted protein [Populus trichocarpa]	1.0	0.288	0.6	1e-46
224157676	336	predicted protein [Populus trichocarpa]	1.0	0.425	0.6	1e-46
359472770	505	PREDICTED: polygalacturonase QRT3-like [	0.972	0.275	0.616	2e-46
147818111	448	hypothetical protein VITISV_025312 [Viti	0.972	0.310	0.616	3e-46
356532616	472	PREDICTED: polygalacturonase QRT3-like [	1.0	0.302	0.588	4e-45
356551020	489	PREDICTED: polygalacturonase QRT3-like [	1.0	0.292	0.594	7e-45
356573577	463	PREDICTED: polygalacturonase QRT3-like [	1.0	0.308	0.582	2e-44
307136409	515	polygalacturonase [Cucumis melo subsp. m	0.993	0.275	0.528	3e-40
390195444	475	polygalacturonase [Brassica napus]	0.972	0.292	0.523	8e-40

>gi|224071045|ref|XP_002303344.1| predicted protein [Populus trichocarpa] gi|222840776|gb|EEE78323.1| predicted protein [Populus trichocarpa]

 Score =  191 bits (486), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 101/175 (57%), Positives = 123/175 (70%), Gaps = 32/175 (18%)

Query: 1   MPGNTQTRIVNSYMDCTGIVAEDPVQLHISSNFFLGDAFIVLKSINGVAKG--------- 51
           +P  TQTRI+N Y+D +GIVAEDPVQL ISS+FFLGDA+I+ KS+ G+AKG         
Sbjct: 315 LPSLTQTRILNCYLDYSGIVAEDPVQLTISSSFFLGDAYILFKSVKGLAKGINIVDNMFS 374

Query: 52  --NNGVEIVKLDQSNGAFKQIDKVFVDRNTVQGMNTRATIARASMQGNGNHG-------- 101
             N G+EIV+LDQS G FKQID+V VDRN V GMN +AT+A+ S+QGNG           
Sbjct: 375 GSNKGIEIVQLDQSKGPFKQIDQVVVDRNNVNGMNLKATVAKGSVQGNGTSWTIDFSPVL 434

Query: 102 -------------RASGSSFPNHALRNVSENRVVIESDVAVPASVFVTVDQGMTS 143
                         +SG+ FP+HALRNVSENRVVIESDVAVPASVFVTV+QG++S
Sbjct: 435 LFPNLIDHVQYSVSSSGTLFPSHALRNVSENRVVIESDVAVPASVFVTVNQGVSS 489

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088096|ref|XP_002335114.1| predicted protein [Populus trichocarpa] gi|224137804|ref|XP_002326444.1| predicted protein [Populus trichocarpa] gi|222832896|gb|EEE71373.1| predicted protein [Populus trichocarpa] gi|222833766|gb|EEE72243.1| predicted protein [Populus trichocarpa]

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 105/175 (60%), Positives = 123/175 (70%), Gaps = 32/175 (18%)

Query: 1   MPGNTQTRIVNSYMDCTGIVAEDPVQLHISSNFFLGDAFIVLKSINGVAKGNN------- 53
           +P  TQTRIVN Y+D TGIVAEDPVQL ISS FFLGDA+I+LKSING+AKG N       
Sbjct: 322 LPSLTQTRIVNCYLDYTGIVAEDPVQLTISSCFFLGDAYILLKSINGLAKGINIVDNMFA 381

Query: 54  ----GVEIVKLDQSNGAFKQIDKVFVDRNTVQGMNTRATIARASMQGNG----------- 98
               G+EIV+LDQS G FK+ID+V VDRN V+GMN +AT AR S QGNG           
Sbjct: 382 GSDKGIEIVQLDQSKGPFKKIDQVVVDRNNVEGMNLKATAARGSAQGNGTSWTVDFSPVL 441

Query: 99  ------NHGR----ASGSSFPNHALRNVSENRVVIESDVAVPASVFVTVDQGMTS 143
                 NH +    +SG+ FP+HALRNVS+NRVVIESD+AV A VFVTV+QG TS
Sbjct: 442 LFPNLINHVQYSLSSSGTKFPSHALRNVSQNRVVIESDIAVAARVFVTVEQGSTS 496

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224157676|ref|XP_002337878.1| predicted protein [Populus trichocarpa] gi|222869958|gb|EEF07089.1| predicted protein [Populus trichocarpa]

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 105/175 (60%), Positives = 123/175 (70%), Gaps = 32/175 (18%)

Query: 1   MPGNTQTRIVNSYMDCTGIVAEDPVQLHISSNFFLGDAFIVLKSINGVAKGNN------- 53
           +P  TQTRIVN Y+D TGIVAEDPVQL ISS FFLGDA+I+LKSING+AKG N       
Sbjct: 162 LPSLTQTRIVNCYLDYTGIVAEDPVQLTISSCFFLGDAYILLKSINGLAKGINIVDNMFA 221

Query: 54  ----GVEIVKLDQSNGAFKQIDKVFVDRNTVQGMNTRATIARASMQGNG----------- 98
               G+EIV+LDQS G FK+ID+V VDRN V+GMN +AT AR S QGNG           
Sbjct: 222 GSDKGIEIVQLDQSKGPFKKIDQVVVDRNNVEGMNLKATAARGSAQGNGTSWTVDFSPVL 281

Query: 99  ------NHGR----ASGSSFPNHALRNVSENRVVIESDVAVPASVFVTVDQGMTS 143
                 NH +    +SG+ FP+HALRNVS+NRVVIESD+AV A VFVTV+QG TS
Sbjct: 282 LFPNLINHVQYSLSSSGTKFPSHALRNVSQNRVVIESDIAVAARVFVTVEQGSTS 336

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472770|ref|XP_003631194.1| PREDICTED: polygalacturonase QRT3-like [Vitis vinifera]

 Score =  189 bits (481), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 106/172 (61%), Positives = 117/172 (68%), Gaps = 33/172 (19%)

Query: 1   MPGNTQTRIVNSYMDCTGIVAEDPVQLHISSNFFLGDAFIVLKSINGVAKG--------- 51
           +P  TQTRIVN Y+D TGIVAEDPVQLHISS+FFLGDA+IV KSINGVA+G         
Sbjct: 334 LPSLTQTRIVNCYLDYTGIVAEDPVQLHISSSFFLGDAYIVFKSINGVARGVSVVGNMFS 393

Query: 52  --NNGVEIVKLDQSNGAFKQIDKVFVDRNTVQGMNTRATIARASMQGNG----------- 98
               GVEIV+LDQ NG FK+ID+V VD N V GM  RAT+ R S QGNG           
Sbjct: 394 GSGKGVEIVQLDQKNGPFKEIDQVVVDGNNVNGMKVRATVGRDSTQGNGTSWSIDFNPIL 453

Query: 99  ---NHGR--------ASGSSFPNHALRNVSENRVVIESDVAVPASVFVTVDQ 139
              NH R         +GSSFP HALRNVS NRVVIES+VAVPASVFVTVDQ
Sbjct: 454 LFPNHIRHVQYSLLTTAGSSFPLHALRNVSGNRVVIESNVAVPASVFVTVDQ 505

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147818111|emb|CAN67113.1| hypothetical protein VITISV_025312 [Vitis vinifera]

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 106/172 (61%), Positives = 116/172 (67%), Gaps = 33/172 (19%)

Query: 1   MPGNTQTRIVNSYMDCTGIVAEDPVQLHISSNFFLGDAFIVLKSINGVAKG--------- 51
           +P  TQTRIVN Y+D TGIVAEDPVQLHISS+FFLGDA+IV KSINGVA+G         
Sbjct: 277 LPSLTQTRIVNCYLDYTGIVAEDPVQLHISSSFFLGDAYIVFKSINGVARGVSVVGNMFS 336

Query: 52  --NNGVEIVKLDQSNGAFKQIDKVFVDRNTVQGMNTRATIARASMQGNG----------- 98
               GVEIV+LDQ NG FK+ID+V VD N V GM  RAT+ R S QGNG           
Sbjct: 337 GSGKGVEIVQLDQKNGPFKEIDQVVVDGNNVNGMKVRATVGRDSTQGNGTSWSIDFNPIL 396

Query: 99  ---NHGR--------ASGSSFPNHALRNVSENRVVIESDVAVPASVFVTVDQ 139
              NH R          GSSFP HALRNVS NRVVIES+VAVPASVFVTVDQ
Sbjct: 397 LFPNHIRHVQYSLLTTXGSSFPLHALRNVSGNRVVIESNVAVPASVFVTVDQ 448

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532616|ref|XP_003534867.1| PREDICTED: polygalacturonase QRT3-like [Glycine max]

 Score =  186 bits (471), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 103/175 (58%), Positives = 118/175 (67%), Gaps = 32/175 (18%)

Query: 1   MPGNTQTRIVNSYMDCTGIVAEDPVQLHISSNFFLGDAFIVLKSINGVAKG--------- 51
           +PG TQTRIVNSYMD T IVAEDPVQLHISS+FFLGDA IVLKS NG+  G         
Sbjct: 298 LPGLTQTRIVNSYMDYTSIVAEDPVQLHISSSFFLGDANIVLKSKNGIVNGVDIVDNMFS 357

Query: 52  --NNGVEIVKLDQSNGAFKQIDKVFVDRNTVQGMNTRATIARASMQGNGNHG-------- 101
             N GVEIV+LDQSN  F+QID+V VDRN  +GM  +AT+A+ SMQGNG           
Sbjct: 358 GSNQGVEIVQLDQSNSPFQQIDQVIVDRNIARGMKLKATVAKMSMQGNGTSWSVDFNNVL 417

Query: 102 -------------RASGSSFPNHALRNVSENRVVIESDVAVPASVFVTVDQGMTS 143
                         +SGS+FPNHALRNVSENRVVIE++ AV A+VFVTVDQ   S
Sbjct: 418 LFPNLIKNVQYSLSSSGSTFPNHALRNVSENRVVIETNEAVAANVFVTVDQSALS 472

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551020|ref|XP_003543877.1| PREDICTED: polygalacturonase QRT3-like [Glycine max]

 Score =  184 bits (468), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 104/175 (59%), Positives = 118/175 (67%), Gaps = 32/175 (18%)

Query: 1   MPGNTQTRIVNSYMDCTGIVAEDPVQLHISSNFFLGDAFIVLKSINGVAKG--------- 51
           +PG TQTRIVNSYMD T IVAEDPVQLHISS+FFLGDA IVLKS+ GV  G         
Sbjct: 315 LPGLTQTRIVNSYMDYTNIVAEDPVQLHISSSFFLGDAGIVLKSVKGVVSGLNIVDNMFS 374

Query: 52  --NNGVEIVKLDQSNGAFKQIDKVFVDRNTVQGMNTRATIARASMQGNGNHG-------- 101
             N GV+IVKLDQSN  F QID+VFV RN V+GMN +AT A+ S+ GNG           
Sbjct: 375 GLNKGVDIVKLDQSNSHFNQIDQVFVARNVVRGMNLKATAAKMSLLGNGTSWTADFNKVL 434

Query: 102 -------------RASGSSFPNHALRNVSENRVVIESDVAVPASVFVTVDQGMTS 143
                         ASG++FPNHALRNVS+NRVVIE+D AV A+VFVTVDQG  S
Sbjct: 435 LFPNLIKHVVYSLSASGNTFPNHALRNVSQNRVVIETDEAVNANVFVTVDQGNAS 489

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573577|ref|XP_003554934.1| PREDICTED: polygalacturonase QRT3-like [Glycine max]

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 102/175 (58%), Positives = 118/175 (67%), Gaps = 32/175 (18%)

Query: 1   MPGNTQTRIVNSYMDCTGIVAEDPVQLHISSNFFLGDAFIVLKSINGVAKG--------- 51
           +PG TQTRIVN YMD T IVAEDPVQLHISS+FFLGDA IVLKS+NG+  G         
Sbjct: 289 LPGLTQTRIVNCYMDYTNIVAEDPVQLHISSSFFLGDAGIVLKSVNGIVSGLNIVDNMFS 348

Query: 52  --NNGVEIVKLDQSNGAFKQIDKVFVDRNTVQGMNTRATIARASMQGNGNHG-------- 101
             N GV+IVKLDQSN  F QID+VFV RN V+GMN +AT A+ S+ GNG           
Sbjct: 349 GLNKGVDIVKLDQSNSPFNQIDQVFVARNVVRGMNLKATTAKMSLLGNGTTWTSDFTKVL 408

Query: 102 -------------RASGSSFPNHALRNVSENRVVIESDVAVPASVFVTVDQGMTS 143
                         A+G++FPNHALRNVS+NRVVIE+D AV A+VFVTVDQG  S
Sbjct: 409 LFPNLIKHVVYSLSANGNTFPNHALRNVSQNRVVIETDEAVNANVFVTVDQGNAS 463

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136409|gb|ADN34218.1| polygalacturonase [Cucumis melo subsp. melo]

 Score =  169 bits (428), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 92/174 (52%), Positives = 114/174 (65%), Gaps = 32/174 (18%)

Query: 1   MPGNTQTRIVNSYMDCTGIVAEDPVQLHISSNFFLGDAFIVLKSINGVAKGNN------- 53
           +PG TQTRI+NSYMD TGIVAEDPVQL I + FFLGD++I LKSINGVA G N       
Sbjct: 342 LPGLTQTRILNSYMDYTGIVAEDPVQLQIVNTFFLGDSYITLKSINGVASGVNIVDNMFS 401

Query: 54  ----GVEIVKLDQSNGAFKQIDKVFVDRNTVQGMNTRATIARASMQGNGNHG-------- 101
               GV IV+LD+S  AFKQID+V V+RN V+GM  ++T+  A ++GNG           
Sbjct: 402 GSDKGVAIVQLDESKSAFKQIDQVAVERNNVKGMQAKSTVGSAELEGNGTSWVLDFNPVL 461

Query: 102 -------------RASGSSFPNHALRNVSENRVVIESDVAVPASVFVTVDQGMT 142
                        R+S + FP H +RNVS+N+VVIE+DVAV  SVF TVDQGM+
Sbjct: 462 LFPNLIKNVQYTFRSSDNGFPKHIVRNVSDNQVVIETDVAVVGSVFATVDQGMS 515

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|390195444|gb|AFL69960.1| polygalacturonase [Brassica napus]

 Score =  168 bits (425), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 90/172 (52%), Positives = 114/172 (66%), Gaps = 33/172 (19%)

Query: 1   MPGNTQTRIVNSYMDCTGIVAEDPVQLHISSNFFLGDAFIVLKSINGVAKG--------- 51
           +PG TQ RIVNSY+D TGIVAEDPVQL IS  FFLGDAFI+LKSINGV +G         
Sbjct: 304 LPGLTQNRIVNSYLDYTGIVAEDPVQLQISGTFFLGDAFILLKSINGVVRGVNIVDNMFS 363

Query: 52  --NNGVEIVKLDQSNGAFKQIDKVFVDRNTVQGMNTRATIARASMQGNGNHGRA------ 103
             +NGV+IV+LDQ+N AF+ +D+V VDRN V GM TR+T+A+AS+ GNG           
Sbjct: 364 GSDNGVQIVQLDQTNKAFENVDQVVVDRNNVNGMATRSTVAKASVDGNGTSWTVDFNQVL 423

Query: 104 ----------------SGSSFPNHALRNVSENRVVIESDVAVPASVFVTVDQ 139
                            G++FP HA+RNVS+NRVV++++  V A V+VTVDQ
Sbjct: 424 LFPNLIKHVQYTLVARDGNAFPIHAVRNVSDNRVVVQTNAPVTAQVYVTVDQ 475

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
TAIR|locus:2119832	481	QRT3 "QUARTET 3" [Arabidopsis	0.685	0.203	0.577	2.1e-25
TAIR|locus:2119817	483	AT4G20040 "AT4G20040" [Arabido	0.902	0.267	0.36	1e-14

TAIR|locus:2119832 QRT3 "QUARTET 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 2.1e-25, P = 2.1e-25
 Identities = 63/109 (57%), Positives = 77/109 (70%)

Query:     1 MPGNTQTRIVNSYMDCTGIVAEDPVQLHISSNFFLGDAFIVLKSINGVAKG--------- 51
             +PG TQ RIVNSY+D TGIVAEDPVQL IS  FFLGDAFI+LKSI G  +G         
Sbjct:   308 LPGLTQNRIVNSYLDYTGIVAEDPVQLQISGTFFLGDAFILLKSIAGYIRGVSIVDNMFS 367

Query:    52 --NNGVEIVKLDQSNGAFKQIDKVFVDRNTVQGMNTRATIARASMQGNG 98
                +GV+IV+LDQ N AF  + +V VDRN+V GM  ++T+AR S+ GNG
Sbjct:   368 GSGHGVQIVQLDQRNTAFDDVGQVVVDRNSVNGMVEKSTVARGSVDGNG 416

GO:0005576 "extracellular region" evidence=ISM

GO:0010584 "pollen exine formation" evidence=RCA;IMP

GO:0004650 "polygalacturonase activity" evidence=IDA

GO:0009556 "microsporogenesis" evidence=IMP

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2119817 AT4G20040 "AT4G20040" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 1.0e-14, P = 1.0e-14
 Identities = 54/150 (36%), Positives = 77/150 (51%)

Query:     7 TRIVNSYMDCTGIVAEDPVQLHISSNFFLGDAFIVLKSINGVAKG------------NNG 54
             TRI N Y+D TGIV EDPV +H+++  FLGDA IVL+S++G   G             N 
Sbjct:   321 TRIDNCYLDYTGIVIEDPVHVHVTNALFLGDANIVLRSVHGKISGVNIVNNMFSGTAKNN 380

Query:    55 VEIVKLDQSNGAFKQIDKVFVDRNTVQGMNTRATIARASMQGNGNHGRASGSS---FPNH 111
               IVKL+   G F  I++V +D+N  +GM  ++T  +A +  NG    A  S    FPN 
Sbjct:   381 FPIVKLE---GEFHDINQVVIDQNNAEGMMLKSTTGKAMVSANGTRWIADFSPVLVFPNR 437

Query:   112 ALRNVSENRVVIESDVAVPASVFVTVDQGM 141
                N  ++    +S   +PA+    V   M
Sbjct:   438 I--NHYQHSFFAQSG-QIPANAVTNVSNNM 464


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.131   0.365    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      143       143   0.00091  102 3  11 22  0.46    31
                                                     30  0.48    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  523 (56 KB)
  Total size of DFA:  110 KB (2075 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.81u 0.12s 13.93t   Elapsed:  00:00:00
  Total cpu time:  13.81u 0.12s 13.93t   Elapsed:  00:00:00
  Start:  Thu May  9 20:34:46 2013   End:  Thu May  9 20:34:46 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00