Citrus Sinensis ID: 045616

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-

MCLKPEAEAIFRQNLVFLGFGYCQARATIKFSILIVGLCHPPEAHDSIIKENSHLSARKLAAALWEFHHYFPISKMHRGVVVNGASDSKMRRRHHRSQHQYKDKGLDLSHFLADPSPSSPEQPESASSLRRHIAQSLIQHHRAIERNNHALQPLSPASYGSSMEMAPYNPAAAVTPTSSLDFKGRVGESRYNLKTSTELLKVLNRIWSLEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQKSDKNWTGKGEQDHLILHISESWLDERMQMKLEEAQYGLSEKNSIVDKLGFEIEAYLQAKRMSASKRTDNTIPRDRRNSLESVPLNEAVSAPQAVGDEEDSAGSDSNCFELDKPRNADLKLQRDEAVNDSVDEAMKHSQTKKNNVSRERTRDRTPTGLQVKFEEQMAWAMSCNGNKEPLMVNAEPGKDVEREPPEITPHKPENRGETEHSISGQNKEHDEVHGSNSNYMIDNLMRNHILLSEAGTIRPENDSGEASCSYPARRNQASPVRQWMSKLTPPDIDISESSTKAPPVSKENTLKAKLLEARSKGQRSRFKVFRGSS

ccccHHHHHHHHHHHHHHcccccccccEEEEEEEEEEcccccccccccccccccccHHHHHHHHHccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccccccccccccccccccccccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccHHHHHcccccc

ccccHHHHHHHHHHHHHHcccHcHEEEEEEEEEEEEEccccccccccccccccEHHHHHHHHHHHHHHcccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccHHHHHHHHHHHcccccEEEEccccc

MCLKPEAEAIFRQNLVFLGFGYCQARATIKFSILIVglchppeahdsiIKENSHLSARKLAAALWEFHhyfpiskmhrgvvvngasdskmrrrhhrsqhqykdkgldlshfladpspsspeqpesaSSLRRHIAQSLIQHHRAIernnhalqplspasygssmemapynpaaavtptssldfkgrvgesrynlKTSTELLKVLNRIWSLEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQksdknwtgkgeqdhLILHISESWLDERMQMKLEEAQyglseknsIVDKLGFEIEAYLQAKRMsaskrtdntiprdrrnslesvplneavsapqavgdeedsagsdsncfeldkprnadlklqrdeaVNDSVDEAMKHSqtkknnvsrertrdrtptglqvKFEEQMAWAMScngnkeplmvnaepgkdvereppeitphkpenrgetehsisgqnkehdevhgsnsnymIDNLMRNHIllseagtirpendsgeascsyparrnqaspvrqwmskltppdidisesstkappvskenTLKAKLLEARSKgqrsrfkvfrgss

MCLKPEAEAIFRQNLVFLGFGYCQARATIKFSILIVGLCHPPEAHDSIIKENSHLSARKLAAALWEFHHYfpiskmhrgVVVNGASDSKMRRRHHRSqhqykdkgLDLSHFLADPSPSSPEQPESASSLRRHIAQSLIQHHRAIERNNHALQPLSPASYGSSMEMAPYNPAAAVTPTSSLDFKGRVgesrynlktsTELLKVLNRIWSLEEQHASNVSLIKALKTELDHARVKIKEllrdqqadrhEMDDLMKQIAEDKLirkskeqdrihaavqsvrdelederklrkrseslhrklarelsevkstlsnalrelegerrsrKLLEELCDEFAIGIKDYDQELHALKQKsdknwtgkgeqdHLILHISESWLDERMQMKLEEAQYGLSEKNSIVDKLGFEIEAYLQAkrmsaskrtdntiprdrrnslesvplneAVSAPQAVGDEEDSAGSDSNCFELDKPRNADLKLQRDEAVNDsvdeamkhsqtkknnvsrertrdrtptglqvkfeEQMAWAMSCNGNKEPLMVNAEpgkdvereppeitphkpenrgetehsisgqnkehdevHGSNSNYMIDNLMRNHILLSEAGTIRPENDSGEASCSyparrnqaspvrqwMSKLtppdidisesstkappvskentlkakllearskgqrsrfkvfrgss

MCLKPEAEAIFRQNLVFLGFGYCQARATIKFSILIVGLCHPPEAHDSIIKENSHLSARKLAAALWEFHHYFPISKMHRGVVVNGASDSKMRRRHHRSQHQYKDKGLDLSHFLADpspsspeqpesassLRRHIAQSLIQHHRAIERNNHALQPLSPASYGSSMEMAPYNPAAAVTPTSSLDFKGRVGESRYNLKTSTELLKVLNRIWSLEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQKSDKNWTGKGEQDHLILHISESWLDERMQMKLEEAQYGLSEKNSIVDKLGFEIEAYLQAKRMSASKRTDNTIPRDRRNSLESVPLNEAVSAPQAVGDEEDSAGSDSNCFELDKPRNADLKLQRDEAVNDSVDEAMKHSQTKKNNVSRERTRDRTPTGLQVKFEEQMAWAMSCNGNKEPLMVNAEPGKDVEREPPEITPHKPENRGETEHSISGQNKEHDEVHGSNSNYMIDNLMRNHILLSEAGTIRPENDSGEASCSYPARRNQASPVRQWMSKLTPPDIDISESSTKAPPVSKENTLKAKLLEARSKGQRSRFKVFRGSS

*******EAIFRQNLVFLGFGYCQARATIKFSILIVGLCHPPEAHDSIIKENSHLSARKLAAALWEFHHYFPISKMHRGVVVN**********************************************************************************************************RYNLKTSTELLKVLNRIWSLEEQHASNVSLIKALKTELDHARVKIKEL***************************************************************************************LLEELCDEFAIGIKDYDQELHALK*****NWTGKGEQDHLILHISESWLDERMQMKLEEAQYGLSEKNSIVDKLGFEIEAYL**************************************************************************************************************************************************************************YMIDNLMRNHILL**********************************************************************************

******AEAIFRQNLVFLGFGYCQARATIKFSILIVG********************RKLAAALWEFHHYF************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************

MCLKPEAEAIFRQNLVFLGFGYCQARATIKFSILIVGLCHPPEAHDSIIKENSHLSARKLAAALWEFHHYFPISKMHRGVVVNGA*****************DKGLDLSHFLA*****************RHIAQSLIQHHRAIERNNHALQPLSPASYGSSMEMAPYNPAAAVTPTSSLDFKGRVGESRYNLKTSTELLKVLNRIWSLEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRK*************************KRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQKSDKNWTGKGEQDHLILHISESWLDERMQMKLEEAQYGLSEKNSIVDKLGFEIEAYLQAKRMSASKRTDNTIPRDRRNSLESVPLNEAVS***************SNCFELDKPRNADLKLQRDEAVNDSVD***********************TGLQVKFEEQMAWAMSCNGNKEPLMVNAEPGKDVEREPPEITPHK*******************EVHGSNSNYMIDNLMRNHILLSEAGTIRP*******************PVRQWMSKLTPPDIDIS***********ENTLKAKLLEA****************

MCLKPEAEAIFRQNLVFLGFGYCQARATIKFSILIVGLCHPPEAHDSIIKENSHLSARKLAAALWEFHHYFPIS*******************************************************************************************************************RYNLKTSTELLKVLNRIWSLEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQKSDKNWTGKGEQDHLILHISESWLDERMQMKLEEAQYGLSEKNSIVDKLGFEIEAYLQAKR*********************************************************************************************************************************************************************************************************************************STKAPPVSKENTLKAKLLEARSKGQ***********

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MCLKPEAEAIFRQNLVFLGFGYCQARATIKFSILIVGLCHPPEAHDSIIKENSHLSARKLAAALWEFHHYFPISKMHRGVVVNGASDSKMRRRHHRSQHQYKDKGLDLSHFLADPSPSSPEQPESASSLRRHIAQSLIQHHRAIERNNHALQPLSPASYGSSMEMAPYNPAAAVTPTSSLDFKGRVGESRYNLKTSTELLKVLNRIWSLEEQHASNVSLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCDEFAIGIKDYDQELHALKQKSDKNWTGKGEQDHLILHISESWLDERMQMKLEEAQYGLSEKNSIVDKLGFEIEAYLQAKRMSASKRTDNTIPRDRRNSLESVPLNEAVSAPQAVGDEEDSAGSDSNCFELDKPRNADLKLQRDEAVNDSVDEAMKHSQTKKNNVSRERTRDRTPTGLQVKFEEQMAWAMSCNGNKEPLMVNAEPGKDVEREPPEITPHKPENRGETEHSISGQNKEHDEVHGSNSNYMIDNLMRNHILLSEAGTIRPENDSGEASCSYPARRNQASPVRQWMSKLTPPDIDISESSTKAPPVSKENTLKAKLLEARSKGQRSRFKVFRGSS

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		671	2.2.26 [Sep-21-2011]
Q66GQ2		623	Uncharacterized protein A	yes	no	0.850	0.916	0.510	1e-159

>sp\|Q66GQ2\|Y5162_ARATH Uncharacterized protein At5g41620 OS=Arabidopsis thaliana GN=At5g41620 PE=1 SV=2	Back alignment and function desciption

 Score =  564 bits (1453), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 329/644 (51%), Positives = 420/644 (65%), Gaps = 73/644 (11%)

Query: 44  AHDSIIKENSHLSARKLAAALWEFHHYF--------------PISKMHRGVVVNGASDSK 89
           AH S +  +  +S+RKLAAA WEFH Y                 +KMHRG   NG + + 
Sbjct: 35  AHISFVPNSIVVSSRKLAAAFWEFHQYHYKDEEDCSYSYLSSASAKMHRGP--NGFAGAS 92

Query: 90  MRRRHHRSQHQYKDKGLDLSHFLADPSPSSPEQPESASSLRRHIAQSLIQHHRAIERNNH 149
            RR+ H      K+ GLDLS FL DPSP    QP+SA SLRR I Q LI+HH++I+RNNH
Sbjct: 93  SRRQRHGKAVAVKENGLDLSQFLRDPSPD--HQPDSAGSLRRQIGQMLIKHHQSIDRNNH 150

Query: 150 ALQPLSPASYGSSMEMAPYNPAAAVTPTSSLDFKGRVG-ESRYNLKTSTELLKVLNRIWS 208
           ALQP+SPASYGSS+E+  YN   AVTP+SSL+F+GR   E  YNLKTSTELLKVLNRIWS
Sbjct: 151 ALQPVSPASYGSSLEVTTYN--KAVTPSSSLEFRGRPSREPHYNLKTSTELLKVLNRIWS 208

Query: 209 LEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQD 268
           LEEQH SN+SLIKALKTE+ H+RV+IKELLR QQADRHE+D ++KQ+AE+KL+ K+KE +
Sbjct: 209 LEEQHVSNISLIKALKTEVAHSRVRIKELLRYQQADRHELDSVVKQLAEEKLLSKNKEVE 268

Query: 269 RIHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEE 328
           R+ +AVQSVR  LEDERKLRKRSESLHRK+ARELSEVKS+LSN ++ELE   +S K++E 
Sbjct: 269 RMSSAVQSVRKALEDERKLRKRSESLHRKMARELSEVKSSLSNCVKELERGSKSNKMMEL 328

Query: 329 LCDEFAIGIKDYDQELHALKQKS-DKNWTGKGEQDHLILHISESWLDERMQMKLEEAQYG 387
           LCDEFA GIK Y++E+H LK+K+ DK+W G+G  D L+LHI+ESWLDERMQM+LE     
Sbjct: 329 LCDEFAKGIKSYEEEIHGLKKKNLDKDWAGRGGGDQLVLHIAESWLDERMQMRLEGGDTL 388

Query: 388 LSEKNSIVDKLGFEIEAYLQAKRMSASKRTDNTIPRDRRNSLESVPLNEAVSAPQAVGDE 447
             +  S++DKL  EIE +LQ KR        N IPR+RRNSLESVP N   + P+ V  E
Sbjct: 389 NGKNRSVLDKLEVEIETFLQEKR--------NEIPRNRRNSLESVPFNTLSAPPRDVDCE 440

Query: 448 EDSAGSDSNCFELDKPRNADLKLQRDEAVNDSVDEAMKHSQTKKNNVSRERTRDRTPTGL 507
           EDS GSDSNCFEL KP                 DE  K +Q  K+    E+   ++P+  
Sbjct: 441 EDSGGSDSNCFELKKP------------AESYGDETKKPNQHNKDGSIDEKP--KSPSSF 486

Query: 508 QVKFEEQMAWAMSCNGNKEPLMVNAEPGKDVEREPPEITPHKPENRGETEHSISGQNKE- 566
           QV FE+QMAWA+S NG K+      +  ++ +         KPEN        S  NK+ 
Sbjct: 487 QVNFEDQMAWALSSNGKKKTTRAIEDEEEEEDV--------KPEN--------SNNNKKP 530

Query: 567 HDEVHGSNSNYMIDNLMRNH-ILLSEAGTIRPENDSGEASCSYPARRNQASPVRQWMSKL 625
            +E   +N N ++  ++R H  LLSE   I       EASC++P+ R QASPVRQW+S+ 
Sbjct: 531 ENECATTNKNDVMGEMIRTHRRLLSETREI------DEASCNFPSSRRQASPVRQWISRT 584

Query: 626 TPPDIDISESSTKAPPVSKENTLKAKLLEARSKGQRSRFKVFRG 669
             PD+ +  S        K+NTLK KL    +   +SR ++F+G
Sbjct: 585 VAPDL-LGPSEIAIAHGVKDNTLKTKL----ANSSKSRLRLFKG 623

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		671
255537659		696	conserved hypothetical protein [Ricinus	0.935	0.902	0.701	0.0
224072067		593	predicted protein [Populus trichocarpa]	0.874	0.989	0.693	0.0
224058421		576	predicted protein [Populus trichocarpa]	0.852	0.993	0.695	0.0
356495701		666	PREDICTED: uncharacterized protein At5g4	0.932	0.939	0.624	0.0
356539531		669	PREDICTED: uncharacterized protein At5g4	0.906	0.908	0.629	0.0
359473993		602	PREDICTED: uncharacterized protein At5g4	0.842	0.938	0.640	0.0
357481507		657	hypothetical protein MTR_5g009750 [Medic	0.868	0.887	0.609	0.0
449452424		682	PREDICTED: uncharacterized protein At5g4	0.928	0.913	0.580	0.0
297742279		650	unnamed protein product [Vitis vinifera]	0.746	0.770	0.602	1e-179
359489831		648	PREDICTED: uncharacterized protein At5g4	0.877	0.908	0.562	1e-175

>gi\|255537659\|ref\|XP_002509896.1\| conserved hypothetical protein [Ricinus communis] gi\|223549795\|gb\|EEF51283.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score =  896 bits (2315), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/654 (70%), Positives = 533/654 (81%), Gaps = 26/654 (3%)

Query: 41  PPEAHDSII------------------KENSHLSARKLAAALWEFHHYFPISKMHRGVV- 81
           PP AH SII                  K  + +SARKLAAALWEF HY P+SKMHRG+  
Sbjct: 46  PPTAHFSIIAKHQDQEEPPFVSYSNNKKAATVVSARKLAAALWEFQHYLPLSKMHRGMHN 105

Query: 82  -VNG-ASDSKMRRRHHRSQHQYKDKGLDLSHFLADPSPSSPEQPESASSLRRHIAQSLIQ 139
             NG A D ++RR  +R  H +KDKGLDLSHFLADPS SS +QPESA SLRRHIA SLIQ
Sbjct: 106 HSNGTACDPRLRRHQNRHHHLFKDKGLDLSHFLADPSASSTDQPESAGSLRRHIAASLIQ 165

Query: 140 HHRAIERNNHALQPLSPASYGSSMEMAPYNPAAAVTPTSSLDFKGRVGESRYNLKTSTEL 199
           HHR+IE++NHALQP+SPASYGSSME+APYNPA  VTP+SSLDFKGR+GES Y+LKTSTEL
Sbjct: 166 HHRSIEKSNHALQPVSPASYGSSMEVAPYNPA--VTPSSSLDFKGRIGESHYSLKTSTEL 223

Query: 200 LKVLNRIWSLEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDK 259
           LKVLNRIWSLEEQH+SN+SLIKALK ELDHARV+IKELLRDQQADRHE+DDLMKQIAEDK
Sbjct: 224 LKVLNRIWSLEEQHSSNMSLIKALKMELDHARVRIKELLRDQQADRHEIDDLMKQIAEDK 283

Query: 260 LIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGE 319
           L+RKSKEQDR+HAA+QS+RDE+EDERKLRKRSESLHRKLARELSEVKS+LSNA++E+E E
Sbjct: 284 LVRKSKEQDRLHAAIQSLRDEIEDERKLRKRSESLHRKLARELSEVKSSLSNAVKEMEKE 343

Query: 320 RRSRKLLEELCDEFAIGIKDYDQELHALKQKSDKNWTGKGEQDHLILHISESWLDERMQM 379
           R+SRKLLE+LCDEFA GIKDY+QELHA+K KSDK+W GK + D LILHISESWLDERMQM
Sbjct: 344 RKSRKLLEDLCDEFARGIKDYEQELHAVKPKSDKDWVGKADGDRLILHISESWLDERMQM 403

Query: 380 KLEEAQYGLSEKNSIVDKLGFEIEAYLQAKRMSASK-RTDNTIPRDRRNSLESVPLNEAV 438
           +LEEAQ+G +E NSIVDKLGFE+E +L+AKR++ S   TDN +PR+RRNS+ESVPLNEAV
Sbjct: 404 RLEEAQHGFAENNSIVDKLGFELETFLKAKRVANSMINTDNKLPRERRNSMESVPLNEAV 463

Query: 439 SAPQAVGDEEDSAGSDSNCFELDKPRNADLKLQRDEAVNDSVDEAMKHSQTKKNNVSRER 498
           SAPQ VGDEEDS  SDS+CFEL+KP N +  L  DEA++D VDE +K SQTKK + S ER
Sbjct: 464 SAPQDVGDEEDSISSDSHCFELNKPSNGEFNLHGDEALDDHVDETVKSSQTKKKSASHER 523

Query: 499 TRDRTPTGLQVKFEEQMAWAMSCNGNKEPLMVNAEPGKDVEREPPEIT-PHKPENRGETE 557
            R + P+ LQVKFEEQMAWAM+ NGN +  +V  E  K  E  P E++   + EN   TE
Sbjct: 524 NRRQNPSSLQVKFEEQMAWAMAANGNNKFPVVGIEELKTGEGNPAEMSISRRSENCDTTE 583

Query: 558 HSISGQNKEHDEVHGSNSNYMIDNLMRNHILLSEAGTIRPENDSGEASCSYPARRNQASP 617
                + K+ DE+HG N NY+IDNL+R+HI  SEAG +R END+GEAS SYP RRN ASP
Sbjct: 584 GGSIERKKKVDEIHGMNQNYVIDNLIRSHISSSEAGHVRLENDAGEASTSYPTRRN-ASP 642

Query: 618 VRQWMSKLTPPDIDISESSTKAPPVSKENTLKAKLLEARSKGQRSRFKVFRGSS 671
           VRQWM+KL+ PD+DISESSTK P   KENTLKAKLLEARSKGQRSR K+FRGSS
Sbjct: 643 VRQWMAKLSTPDLDISESSTKQPSTLKENTLKAKLLEARSKGQRSRLKIFRGSS 696

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224072067\|ref\|XP_002303618.1\| predicted protein [Populus trichocarpa] gi\|222841050\|gb\|EEE78597.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224058421\|ref\|XP_002299501.1\| predicted protein [Populus trichocarpa] gi\|222846759\|gb\|EEE84306.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356495701\|ref\|XP_003516712.1\| PREDICTED: uncharacterized protein At5g41620-like [Glycine max]	Back alignment and taxonomy information

>gi\|356539531\|ref\|XP_003538251.1\| PREDICTED: uncharacterized protein At5g41620-like [Glycine max]	Back alignment and taxonomy information

>gi\|359473993\|ref\|XP_002276152.2\| PREDICTED: uncharacterized protein At5g41620-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357481507\|ref\|XP_003611039.1\| hypothetical protein MTR_5g009750 [Medicago truncatula] gi\|355512374\|gb\|AES93997.1\| hypothetical protein MTR_5g009750 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449452424\|ref\|XP_004143959.1\| PREDICTED: uncharacterized protein At5g41620-like [Cucumis sativus] gi\|449501851\|ref\|XP_004161476.1\| PREDICTED: uncharacterized protein At5g41620-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297742279\|emb\|CBI34428.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359489831\|ref\|XP_002276470.2\| PREDICTED: uncharacterized protein At5g41620-like [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		671
TAIR\|locus:2160477		623	AT5G41620 "AT5G41620" [Arabido	0.698	0.752	0.530	1.7e-123
TAIR\|locus:2024568		593	AT1G64180 "AT1G64180" [Arabido	0.402	0.455	0.602	4.8e-95
TAIR\|locus:2062877		468	AT2G46250 "AT2G46250" [Arabido	0.320	0.459	0.449	5.8e-51
TAIR\|locus:2080792		622	AT3G11590 [Arabidopsis thalian	0.722	0.779	0.306	1.3e-50
TAIR\|locus:2092319		673	AT3G20350 [Arabidopsis thalian	0.327	0.326	0.290	3.9e-27
TAIR\|locus:2007996		725	AT1G50660 [Arabidopsis thalian	0.320	0.296	0.281	1.7e-26
TAIR\|locus:2176387		481	AT5G22310 "AT5G22310" [Arabido	0.314	0.438	0.297	2e-15
RGD\|1307994		1941	Myh7b "myosin, heavy chain 7B,	0.608	0.210	0.241	2e-08
ZFIN\|ZDB-GENE-081124-1		1939	myhb "myosin, heavy chain b" [	0.606	0.209	0.239	4.5e-08
MGI\|MGI:3710243		1941	Myh7b "myosin, heavy chain 7B,	0.603	0.208	0.244	6.9e-08

TAIR\|locus:2160477 AT5G41620 "AT5G41620" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1214 (432.4 bits), Expect = 1.7e-123, P = 1.7e-123
 Identities = 271/511 (53%), Positives = 343/511 (67%)

Query:    44 AHDSIIKENSHLSARKLAAALWEFHHYF--------------PISKMHRGVVVNGASDSK 89
             AH S +  +  +S+RKLAAA WEFH Y                 +KMHRG   NG + + 
Sbjct:    35 AHISFVPNSIVVSSRKLAAAFWEFHQYHYKDEEDCSYSYLSSASAKMHRGP--NGFAGAS 92

Query:    90 MRRRHHRSQHQYKDKGLDLSHFLADXXXXXXXXXXXXXXLRRHIAQSLIQHHRAIERNNH 149
              RR+ H      K+ GLDLS FL D              LRR I Q LI+HH++I+RNNH
Sbjct:    93 SRRQRHGKAVAVKENGLDLSQFLRDPSPDHQPDSAGS--LRRQIGQMLIKHHQSIDRNNH 150

Query:   150 ALQPLSPASYGSSMEMAPYNPAAAVTPTSSLDFKGRVG-ESRYNLKTSTELLKVLNRIWS 208
             ALQP+SPASYGSS+E+  YN A  VTP+SSL+F+GR   E  YNLKTSTELLKVLNRIWS
Sbjct:   151 ALQPVSPASYGSSLEVTTYNKA--VTPSSSLEFRGRPSREPHYNLKTSTELLKVLNRIWS 208

Query:   209 LEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQD 268
             LEEQH SN+SLIKALKTE+ H+RV+IKELLR QQADRHE+D ++KQ+AE+KL+ K+KE +
Sbjct:   209 LEEQHVSNISLIKALKTEVAHSRVRIKELLRYQQADRHELDSVVKQLAEEKLLSKNKEVE 268

Query:   269 RIHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEE 328
             R+ +AVQSVR  LEDERKLRKRSESLHRK+ARELSEVKS+LSN ++ELE   +S K++E 
Sbjct:   269 RMSSAVQSVRKALEDERKLRKRSESLHRKMARELSEVKSSLSNCVKELERGSKSNKMMEL 328

Query:   329 LCDEFAIGIKDYDQELHALKQKS-DKNWTGKGEQDHLILHISESWLDERMQMKLEEAQYG 387
             LCDEFA GIK Y++E+H LK+K+ DK+W G+G  D L+LHI+ESWLDERMQM+LE     
Sbjct:   329 LCDEFAKGIKSYEEEIHGLKKKNLDKDWAGRGGGDQLVLHIAESWLDERMQMRLEGGDT- 387

Query:   388 LSEKN-SIVDKLGFEIEAYLQAKRMSASKRTDNTIPRDRRNSLESVPLNEAVSAPQAVGD 446
             L+ KN S++DKL  EIE +LQ KR        N IPR+RRNSLESVP N   + P+ V  
Sbjct:   388 LNGKNRSVLDKLEVEIETFLQEKR--------NEIPRNRRNSLESVPFNTLSAPPRDVDC 439

Query:   447 EEDSAGSDSNCFELDKPRNA---DLKLQRDEAVNDSVDEAMKHSQTKKNNVSRERT---- 499
             EEDS GSDSNCFEL KP  +   + K       + S+DE  K   + + N   +      
Sbjct:   440 EEDSGGSDSNCFELKKPAESYGDETKKPNQHNKDGSIDEKPKSPSSFQVNFEDQMAWALS 499

Query:   500 ---RDRTPTGLQVKFEEQMAWAMSCNGNKEP 527
                + +T   ++ + EE+     + N NK+P
Sbjct:   500 SNGKKKTTRAIEDEEEEEDVKPENSNNNKKP 530

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR\|locus:2024568 AT1G64180 "AT1G64180" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2062877 AT2G46250 "AT2G46250" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2080792 AT3G11590 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2092319 AT3G20350 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2007996 AT1G50660 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2176387 AT5G22310 "AT5G22310" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

RGD\|1307994 Myh7b "myosin, heavy chain 7B, cardiac muscle, beta" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-081124-1 myhb "myosin, heavy chain b" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

MGI\|MGI:3710243 Myh7b "myosin, heavy chain 7B, cardiac muscle, beta" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q66GQ2	Y5162_ARATH	No assigned EC number	0.5108	0.8509	0.9165	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		671
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-08
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-05
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-04
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	7e-04
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.002
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

 Score = 55.9 bits (135), Expect = 6e-08
 Identities = 51/228 (22%), Positives = 109/228 (47%), Gaps = 13/228 (5%)

Query: 194 KTSTELLKVLNRIWSLEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMK 253
           +   ELL++   I  LE +       I  L+  L+    +++EL    +  + +++ L +
Sbjct: 285 ELQEELLELKEEIEELEGE-------ISLLRERLEELENELEELEERLEELKEKIEALKE 337

Query: 254 QIAEDKLIRKSKEQDRIHAAVQSVRDELEDERK-LRKRSESLHRKLARELSEVKSTLSNA 312
           ++ E + + +  EQ    A ++  ++ELE++   L +  E L   L  EL+E+++ L+  
Sbjct: 338 ELEERETLLEELEQLL--AELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEI 395

Query: 313 LRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQKSDKNWTGKGEQDHLILHISESW 372
             ELE  +R  + LEE  +  +  ++D  +EL  L+ + ++  T   E +  +  + E  
Sbjct: 396 RNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQL 455

Query: 373 LDERMQMKLEEAQYGLSEKNSIVDKLGFEIEAYLQAK-RMSASKRTDN 419
             E ++ +L+E +  L+E    + +L  E+ +      R+ A +R   
Sbjct: 456 --EELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQ 501

Length = 1163

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		671
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.33
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	96.45
KOG0977		546	consensus Nuclear envelope protein lamin, intermed	96.25
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.23
PF00038		312	Filament: Intermediate filament protein; InterPro:	96.2
KOG0971		1243	consensus Microtubule-associated protein dynactin	95.86
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	95.36
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	94.97
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	94.65
KOG0977		546	consensus Nuclear envelope protein lamin, intermed	94.4
KOG0996		1293	consensus Structural maintenance of chromosome pro	94.26
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	94.16
KOG0612		1317	consensus Rho-associated, coiled-coil containing p	94.1
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	93.88
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	93.47
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	92.89
KOG0163		1259	consensus Myosin class VI heavy chain [Cytoskeleto	92.13
KOG0964		1200	consensus Structural maintenance of chromosome pro	91.94
KOG0933		1174	consensus Structural maintenance of chromosome pro	91.85
PF00038		312	Filament: Intermediate filament protein; InterPro:	91.67
PRK02224		880	chromosome segregation protein; Provisional	91.35
PHA02562		562	46 endonuclease subunit; Provisional	91.0
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	90.66
PRK09039		343	hypothetical protein; Validated	90.65
PRK02224		880	chromosome segregation protein; Provisional	90.43
PF09727		192	CortBP2: Cortactin-binding protein-2; InterPro: IP	89.86
PRK03918		880	chromosome segregation protein; Provisional	89.85
PF05701		522	WEMBL: Weak chloroplast movement under blue light;	89.6
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	89.53
PF12718		143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	89.36
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	88.95
PF05701		522	WEMBL: Weak chloroplast movement under blue light;	88.73
PF05615		139	THOC7: Tho complex subunit 7; InterPro: IPR008501	88.59
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	88.31
PF07798		177	DUF1640: Protein of unknown function (DUF1640); In	88.21
PF06705		247	SF-assemblin: SF-assemblin/beta giardin	87.99
PRK04778		569	septation ring formation regulator EzrA; Provision	87.84
KOG0976		1265	consensus Rho/Rac1-interacting serine/threonine ki	87.77
KOG0963		629	consensus Transcription factor/CCAAT displacement	87.55
PF07798		177	DUF1640: Protein of unknown function (DUF1640); In	86.84
PF06705		247	SF-assemblin: SF-assemblin/beta giardin	86.77
PF10174		775	Cast: RIM-binding protein of the cytomatrix active	86.36
PF09731		582	Mitofilin: Mitochondrial inner membrane protein; I	86.25
KOG0933		1174	consensus Structural maintenance of chromosome pro	85.84
KOG0579		1187	consensus Ste20-like serine/threonine protein kina	85.44
PF08647		96	BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395	85.28
PRK11637		428	AmiB activator; Provisional	85.08
KOG0612		1317	consensus Rho-associated, coiled-coil containing p	83.93
PF10168		717	Nup88: Nuclear pore component; InterPro: IPR019321	83.66
COG0419		908	SbcC ATPase involved in DNA repair [DNA replicatio	83.61
COG4717		984	Uncharacterized conserved protein [Function unknow	83.41
PF00901		508	Orbi_VP5: Orbivirus outer capsid protein VP5; Inte	83.13
KOG0996		1293	consensus Structural maintenance of chromosome pro	82.95
KOG0994		1758	consensus Extracellular matrix glycoprotein Lamini	82.71
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	82.32
PHA02562		562	46 endonuclease subunit; Provisional	80.91
KOG1853		333	consensus LIS1-interacting protein NUDE [Cytoskele	80.89
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	80.41
PRK04863		1486	mukB cell division protein MukB; Provisional	80.21

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

Probab=97.33  E-value=0.0059  Score=70.97  Aligned_cols=175  Identities=23%  Similarity=0.329  Sum_probs=104.2

Q ss_pred             cccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 045616          210 EEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRK  289 (671)
Q Consensus       210 eeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rr  289 (671)
                      .......=+-|..|+.|-++.+.++.+|.+.++.++..|..|=|+|++|+..+-            ++-.+|..|||.|+
T Consensus       452 ~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~------------~lEkQL~eErk~r~  519 (697)
T PF09726_consen  452 TNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRA------------SLEKQLQEERKARK  519 (697)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHh
Confidence            333334446688899999999999999999999999999999999999975433            46678999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhhchhhh--ccCCccchhhHH
Q 045616          290 RSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQKSDKNW--TGKGEQDHLILH  367 (671)
Q Consensus       290 r~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~--~ee~eeER~MLq  367 (671)
                      ..|.-   -++.++.+.+.-.-   -=|.=|..+.=||.-|+.|-+++..-++.+..|..+....+  +.|.+.|-+||.
T Consensus       520 ~ee~~---aar~~~~~~~~r~e---~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~  593 (697)
T PF09726_consen  520 EEEEK---AARALAQAQATRQE---CAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLM  593 (697)
T ss_pred             HHHHh---hhhccccchhccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence            87763   23221111100000   00111333344555566666666555555555555432111  112345556555


Q ss_pred             hhhhhhhhhhhhhHHHhhhcccchhhHHHHhhHHHHHHHHhhh
Q 045616          368 ISESWLDERMQMKLEEAQYGLSEKNSIVDKLGFEIEAYLQAKR  410 (671)
Q Consensus       368 mAEvWREERVQMKL~eAk~~leeK~s~vdkL~~elEaFL~~k~  410 (671)
                      .|=.=.    |    |--..||...++=.++.-||=.-|...+
T Consensus       594 ~aL~am----q----dk~~~LE~sLsaEtriKldLfsaLg~ak  628 (697)
T PF09726_consen  594 SALSAM----Q----DKNQHLENSLSAETRIKLDLFSALGDAK  628 (697)
T ss_pred             HHHHHH----H----HHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            443211    1    1123356666666777777777776543

; GO: 0016021 integral to membrane

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]	Back alignment and domain information

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]	Back alignment and domain information

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>PRK09039 hypothetical protein; Validated	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1)	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function	Back alignment and domain information

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function	Back alignment and domain information

>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins	Back alignment and domain information

>PF06705 SF-assemblin: SF-assemblin/beta giardin	Back alignment and domain information

>PRK04778 septation ring formation regulator EzrA; Provisional	Back alignment and domain information

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]	Back alignment and domain information

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]	Back alignment and domain information

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins	Back alignment and domain information

>PF06705 SF-assemblin: SF-assemblin/beta giardin	Back alignment and domain information

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []	Back alignment and domain information

>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology	Back alignment and domain information

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions []	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs	Back alignment and domain information

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>COG4717 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid	Back alignment and domain information

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>PRK04863 mukB cell division protein MukB; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		671
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	1e-08
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	2e-07
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	3e-05
2ycu_A		995	Non muscle myosin 2C, alpha-actinin; motor protein	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 57.9 bits (139), Expect = 9e-09
 Identities = 71/490 (14%), Positives = 144/490 (29%), Gaps = 129/490 (26%)

Query: 3   LKPEAEAIFRQNLVF---LGFG-------YCQARATIK---FSI--LIVGLCHPPEAHDS 47
           L+P       +N++    LG G        C +        F I  L +  C+ PE   +
Sbjct: 147 LRPA------KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE---T 197

Query: 48  IIKENSHLSARKLAAALWEFHHYFPISKMHRGVVVNGASDSKMRRRHHRSQHQYKDKGLD 107
           +++    L  +          H   I    R          +   R       Y++  L 
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIK--LR------IHSIQAELRRLLKSKPYENCLLV 249

Query: 108 LSHFLADPSPSSPEQPES--------ASSLRRHIAQSLIQHHRAIERNNHALQPLSP--- 156
           L +        + +   +         ++  + +   L          +H    L+P   
Sbjct: 250 LLNV------QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 157 ----ASY-GSSMEMAPY-----NP-AAAVTPTSSLDFKGRVGESR-YNLKTSTELLKVLN 204
                 Y     +  P      NP   ++   S  D        +  N    T +++   
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES-- 361

Query: 205 RIWSLEEQHASNVSLIKALKTEL----DHARVKIKELLRD-QQADRHEMDDLMKQIAEDK 259
              SL        +  + +   L      A +    L        + ++  ++ ++ +  
Sbjct: 362 ---SLNVL---EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415

Query: 260 LIRKSKEQDR--IHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELE 317
           L+ K  ++    I +    ++ +LE+E        +LHR +    +  K+  S+ L    
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEY-------ALHRSIVDHYNIPKTFDSDDLIPPY 468

Query: 318 ---------GERRSRKLLEELCDEFAIGIKDYDQELHALKQK---SDKNWTGKGEQDHLI 365
                    G         E    F      +  +   L+QK       W   G   + +
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFR---MVF-LDFRFLEQKIRHDSTAWNASGSILNTL 524

Query: 366 L-------HISES-WLDERMQ-------MKLEEA----------QYGLSEKNSIVDKLGF 400
                   +I ++    ER+         K+EE           +  L  ++  +    F
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI----F 580

Query: 401 EIEAYLQAKR 410
           E EA+ Q +R
Sbjct: 581 E-EAHKQVQR 589

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		671
2ocy_A		154	RAB guanine nucleotide exchange factor SEC2; RAB,	97.3
2eqb_B		97	RAB guanine nucleotide exchange factor SEC2; coile	96.01
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	95.77
2e7s_A		135	RAB guanine nucleotide exchange factor SEC2; coile	92.95
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	92.22
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	92.15
1c1g_A		284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	92.03
3u59_A		101	Tropomyosin beta chain; muscle contraction, actin,	90.84
2hg7_A		110	Phage-like element PBSX protein XKDW; dimer, GFT s	89.64
3u1c_A		101	Tropomyosin alpha-1 chain; anti-parallel coiled co	89.25
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	88.65
1c1g_A		284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	87.67
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	86.73
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	86.46
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	83.44
3ol1_A		119	Vimentin; structural genomics, PSI-2, protein stru	81.45
2v71_A		189	Nuclear distribution protein NUDE-like 1; developm	80.53
2eqb_B		97	RAB guanine nucleotide exchange factor SEC2; coile	80.42
2ocy_A		154	RAB guanine nucleotide exchange factor SEC2; RAB,	80.29
2i1j_A		575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	80.08

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1	Back alignment and structure

Probab=97.30  E-value=0.0072  Score=57.59  Aligned_cols=130  Identities=19%  Similarity=0.347  Sum_probs=100.6

Q ss_pred             hHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHH
Q 045616          196 STELLKVLNRIWSLEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQ  275 (671)
Q Consensus       196 S~ELlkVLnrIW~leeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~  275 (671)
                      |+.|+..+|+.=.|+|.       +..++.+|..++.+|++|+..+.    +++.+.    .++        .-+.+-+.
T Consensus         5 StKLI~Ain~qs~LeD~-------L~~~R~el~~~~~ri~~lE~~r~----~~~~l~----~~~--------~~~~~e~~   61 (154)
T 2ocy_A            5 STQLIESVDKQSHLEEQ-------LNKSLKTIASQKAAIENYNQLKE----DYNTLK----REL--------SDRDDEVK   61 (154)
T ss_dssp             HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHTTHHHHH----HHHHHH----THH--------HHHHHHHH
T ss_pred             HHHHHHHHHhhccHHHH-------HHHHHHHHHHHHHHHHHHHHHHH----HHHHHH----HHH--------hhhhHHHH
Confidence            68999999999767764       67889999999999999998764    233332    221        23566677


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHh
Q 045616          276 SVRDELEDERKLRKRSESLHRKLARELSEVKST-LSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALK  348 (671)
Q Consensus       276 slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss-~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LK  348 (671)
                      .|.++|..|+..|..+|.-..++-.||.+.-.| |..|=+=.-.+|+.+..+|.=-+.|-+.+++-+.-++.|-
T Consensus        62 ~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq  135 (154)
T 2ocy_A           62 RLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLT  135 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            799999999999999999999999999997554 5555555567899999999888888888777655555443

PyMOL of 2ocy

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A	Back alignment and structure

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A	Back alignment and structure

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}	Back alignment and structure

>2hg7_A Phage-like element PBSX protein XKDW; dimer, GFT structural genomics, PSI, protein structure initiative; NMR {Bacillus subtilis} SCOP: d.186.2.1	Back alignment and structure

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}	Back alignment and structure

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}	Back alignment and structure

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1	Back alignment and structure

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1	Back alignment and structure

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00