Citrus Sinensis ID: 045628

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140--
Protein Sequence
MERNQQLRRQLASMRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYATLRRKLEAYFQQALPGA
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MERNQQLRRQLASMRQSLFDQGHLDEQFILLEelqddanpnfVEEVVTLHYRDSARLITTIERALekspldfnkldgymhqfkgsstsigakkvKAESTQFREYCeagngegcmkTFQLLKRDYATLRRKLEAYFQQALPGA
Flexible Loop (DISEMBL)
MERNQQLRRQLASMRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFkgsstsigakkVKAESTQFREYCEagngegcmktFQLLKRDYATLRRKLEAYFQQALPGA
Low Complexity Region (SEG)
MERNQQLRRQLASMRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYATLRRKLEAYFQQALPGA
Disordered region (IsUnstruct)
********************QGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQF****************TQFREYCEAGNGEGCMKTFQLLKRDYATLRRKLEAYFQ******
Disordered Region (DISOPRED)
********RQLASMRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYC***NGEGCMKTFQLLKRDYATLRRKLEAYFQQA****
Disordered Region (DISEMBL)
**********LASMRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYATLRRKLEAYFQQALPGA
Disordered Region (DISPRO)
*ERNQQLRRQLASMRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYATLRRKLEAYFQQALPG*
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MERNQQLRRQLASMRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTxxxxxxxxxxxxxxxxxxxxxALPGA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	142	2.2.26 [Sep-21-2011]
Q9LU15	127	Histidine-containing phos	no	no	0.816	0.913	0.724	2e-46
Q9ZNV8	156	Histidine-containing phos	no	no	0.915	0.833	0.442	2e-27
Q6VAK4	149	Histidine-containing phos	no	no	0.915	0.872	0.435	1e-26
Q9SAZ5	155	Histidine-containing phos	no	no	0.915	0.838	0.427	8e-26
Q8L9T7	157	Histidine-containing phos	no	no	0.915	0.828	0.427	3e-25
Q9ZNV9	154	Histidine-containing phos	no	no	0.922	0.850	0.419	4e-23
Q9SSC9	154	Histidine-containing phos	no	no	0.922	0.850	0.325	2e-09

>sp|Q9LU15|AHP4_ARATH Histidine-containing phosphotransfer protein 4 OS=Arabidopsis thaliana GN=AHP4 PE=1 SV=2

 Score =  184 bits (466), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 84/116 (72%), Positives = 100/116 (86%)

Query: 21  QGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMH 80
           QG+LDEQF+ LEELQDDANPNFVEEV  L+++DSARLI  I++ALE+   DFN+LD YMH
Sbjct: 9   QGYLDEQFMELEELQDDANPNFVEEVSALYFKDSARLINNIDQALERGSFDFNRLDSYMH 68

Query: 81  QFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYATLRRKLEAYFQ 136
           QFKGSSTSIGA KVKAE T FREYC AGN EGC++TFQ LK++++TLR+KLE YFQ
Sbjct: 69  QFKGSSTSIGASKVKAECTTFREYCRAGNAEGCLRTFQQLKKEHSTLRKKLEHYFQ 124

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZNV8|AHP2_ARATH Histidine-containing phosphotransfer protein 2 OS=Arabidopsis thaliana GN=AHP2 PE=1 SV=1

 Score =  121 bits (303), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/131 (44%), Positives = 88/131 (67%), Gaps = 1/131 (0%)

Query: 6   QLRRQLASMRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERAL 65
           QL+RQ      SL+ QG LD+QF  L++LQDD +P+FV EV++L + D  +LI+ + RAL
Sbjct: 7   QLQRQFRDYTISLYQQGFLDDQFTELKKLQDDGSPDFVSEVLSLFFEDCVKLISNMARAL 66

Query: 66  EKS-PLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDY 124
           + +  +DF+++   +HQ KGSS+S+GAK+VK     F+E CEA N EGC++  Q +  +Y
Sbjct: 67  DTTGTVDFSQVGASVHQLKGSSSSVGAKRVKTLCVSFKECCEAKNYEGCVRCLQQVDIEY 126

Query: 125 ATLRRKLEAYF 135
             L+ KL+  F
Sbjct: 127 KALKTKLQDMF 137

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6VAK4|HP1_ORYSJ Histidine-containing phosphotransfer protein 1 OS=Oryza sativa subsp. japonica GN=HP1 PE=1 SV=1

 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/131 (43%), Positives = 84/131 (64%), Gaps = 1/131 (0%)

Query: 7   LRRQLASMRQSLFDQGHLDEQFILLEELQDDA-NPNFVEEVVTLHYRDSARLITTIERAL 65
           LR QL ++  S+F QG +DEQF  L+ LQD+   P FV EVVTL   D+ R+I  I   L
Sbjct: 6   LRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLL 65

Query: 66  EKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYA 125
           E+  ++F+K+D Y+HQ KGSS S+GA+KVK    QFR++C+  + +GC+    +++ D+ 
Sbjct: 66  EQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFY 125

Query: 126 TLRRKLEAYFQ 136
            LR K +   Q
Sbjct: 126 DLRNKFQTMLQ 136

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SAZ5|AHP3_ARATH Histidine-containing phosphotransfer protein 3 OS=Arabidopsis thaliana GN=AHP3 PE=1 SV=2

 Score =  115 bits (288), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 56/131 (42%), Positives = 87/131 (66%), Gaps = 1/131 (0%)

Query: 6   QLRRQLASMRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERAL 65
           QL+R+      SL+ QG LD+QF  L++LQD+ +P+FV EVVTL + D  +LI+ + RAL
Sbjct: 7   QLQRRFCDFTISLYHQGFLDDQFTELKKLQDECSPDFVAEVVTLFFEDCEKLISNMARAL 66

Query: 66  EKSP-LDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDY 124
           +++  +DF  +   +HQ KGSS+S+GAK+VK      +E C++ N EGC++  Q +  +Y
Sbjct: 67  DQTGNVDFKLVGSSVHQLKGSSSSVGAKRVKGLCVTLKECCDSQNYEGCVRCLQQVDIEY 126

Query: 125 ATLRRKLEAYF 135
            TL+ KL+  F
Sbjct: 127 KTLKAKLQDLF 137

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L9T7|AHP5_ARATH Histidine-containing phosphotransfer protein 5 OS=Arabidopsis thaliana GN=AHP5 PE=1 SV=2

 Score =  114 bits (284), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 56/131 (42%), Positives = 84/131 (64%), Gaps = 1/131 (0%)

Query: 6   QLRRQLASMRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERAL 65
           QL+RQ      SL+ QG LD QF  L +LQD+  P+FV EVV+L + D ++LI T+  +L
Sbjct: 8   QLQRQFQDYIVSLYQQGFLDNQFSELRKLQDEGTPDFVAEVVSLFFDDCSKLINTMSISL 67

Query: 66  EKSP-LDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDY 124
           E+   +DF ++D  +HQ KGSS+S+GA++VK     F+E C+  N EGC++  Q +  +Y
Sbjct: 68  ERPDNVDFKQVDSGVHQLKGSSSSVGARRVKNVCISFKECCDVQNREGCLRCLQQVDYEY 127

Query: 125 ATLRRKLEAYF 135
             L+ KL+  F
Sbjct: 128 KMLKTKLQDLF 138

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZNV9|AHP1_ARATH Histidine-containing phosphotransfer protein 1 OS=Arabidopsis thaliana GN=AHP1 PE=1 SV=1

 Score =  106 bits (265), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 55/131 (41%), Positives = 90/131 (68%)

Query: 6   QLRRQLASMRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERAL 65
           Q ++ L    +SLF +G LD QF+ L++LQD++NP+FV +VVTL ++DS R++  +  +L
Sbjct: 5   QKQKSLQDYTKSLFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILNDLSLSL 64

Query: 66  EKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYA 125
           ++  +DF K+D ++HQ KGSS+SIGA++VK     FR +CE  N E C +  Q +K++Y 
Sbjct: 65  DQQVVDFKKVDPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEACHRCLQQVKQEYY 124

Query: 126 TLRRKLEAYFQ 136
            ++ +LE  F+
Sbjct: 125 LVKNRLETLFK 135

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSC9|AHP6_ARATH Histidine-containing phosphotransfer protein 6 OS=Arabidopsis thaliana GN=AHP6 PE=2 SV=2

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 80/132 (60%), Gaps = 1/132 (0%)

Query: 6   QLRRQLASMRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSAR-LITTIERA 64
           +L+  +  +  SLF QG LDEQF+ L++LQD+ +PNFV +V+ +++ +S + L       
Sbjct: 8   RLQADINRLLASLFHQGVLDEQFLQLQQLQDETSPNFVYDVINIYFDESEKLLRNLRLLL 67

Query: 65  LEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDY 124
           +++   D+ K+  +++Q  GSS+SIGA++V+     FR   E  N  GC++  ++++ +Y
Sbjct: 68  MDREFSDYKKIGLHLNQLVGSSSSIGARRVRNVCVAFRSASELSNRPGCLRGLEVVEHEY 127

Query: 125 ATLRRKLEAYFQ 136
             L+  +   FQ
Sbjct: 128 HYLKNMMHELFQ 139

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
224054404	224	histidine phosphotransfer protein [Popul	0.964	0.611	0.833	3e-61
391349165	150	histidine phosphotransfer protein [Popul	0.964	0.913	0.833	6e-61
449447821	150	PREDICTED: histidine-containing phosphot	0.964	0.913	0.782	1e-57
225442470	150	PREDICTED: histidine-containing phosphot	0.964	0.913	0.782	1e-56
351723223	151	uncharacterized protein LOC100526849 [Gl	0.964	0.907	0.769	1e-55
356526081	151	PREDICTED: histidine-containing phosphot	0.964	0.907	0.769	2e-55
357454793	150	Histidine phosphotransfer protein [Medic	0.964	0.913	0.753	2e-55
255549828	150	Histidine-containing phosphotransfer pro	0.964	0.913	0.775	2e-55
133948416	150	histidine-containing phosphotransferase	0.950	0.9	0.786	7e-55
357454789	150	Histidine phosphotransfer protein [Medic	0.964	0.913	0.739	1e-54

>gi|224054404|ref|XP_002298243.1| histidine phosphotransfer protein [Populus trichocarpa] gi|222845501|gb|EEE83048.1| histidine phosphotransfer protein [Populus trichocarpa]

 Score =  239 bits (610), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 115/138 (83%), Positives = 127/138 (92%), Gaps = 1/138 (0%)

Query: 1   MERNQQLRRQLASMRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITT 60
           MERNQ LRRQ+A  RQSLFDQG LDEQFI LEELQDDANPNFVEEVV+LHYRDSARLI+ 
Sbjct: 1   MERNQ-LRRQVALTRQSLFDQGFLDEQFIQLEELQDDANPNFVEEVVSLHYRDSARLISN 59

Query: 61  IERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLL 120
           IE+ALEK+PLDFNKLDGYMHQFKGSS+SIGAKKVKAE T FREYC+AGNGEGCM+TFQ +
Sbjct: 60  IEKALEKNPLDFNKLDGYMHQFKGSSSSIGAKKVKAECTLFREYCKAGNGEGCMRTFQQI 119

Query: 121 KRDYATLRRKLEAYFQQA 138
           K++YATL+RKLE YFQ A
Sbjct: 120 KKEYATLKRKLETYFQLA 137

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|391349165|emb|CCI55474.1| histidine phosphotransfer protein [Populus x canadensis]

 Score =  238 bits (607), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 115/138 (83%), Positives = 127/138 (92%), Gaps = 1/138 (0%)

Query: 1   MERNQQLRRQLASMRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITT 60
           MERNQ LRRQ+A  RQSLFDQG LDEQFI LEELQDDANPNFVEEVV+LHYRDSARLI+ 
Sbjct: 1   MERNQ-LRRQVALTRQSLFDQGFLDEQFIQLEELQDDANPNFVEEVVSLHYRDSARLISN 59

Query: 61  IERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLL 120
           IE+ALEK+PLDFNKLDGYMHQFKGSS+SIGAKKVKAE T FREYC+AGNGEGCM+TFQ +
Sbjct: 60  IEKALEKNPLDFNKLDGYMHQFKGSSSSIGAKKVKAECTLFREYCKAGNGEGCMRTFQQI 119

Query: 121 KRDYATLRRKLEAYFQQA 138
           K++YATL+RKLE YFQ A
Sbjct: 120 KKEYATLKRKLETYFQLA 137

Source: Populus x canadensis

Species: Populus x canadensis

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447821|ref|XP_004141666.1| PREDICTED: histidine-containing phosphotransfer protein 4-like [Cucumis sativus] gi|449480619|ref|XP_004155947.1| PREDICTED: histidine-containing phosphotransfer protein 4-like [Cucumis sativus]

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 108/138 (78%), Positives = 126/138 (91%), Gaps = 1/138 (0%)

Query: 1   MERNQQLRRQLASMRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITT 60
           ME+ Q LRRQLA++RQSLFDQG LDEQF+ LEELQDDANPNFVEE+VTL+YRDS+RLI +
Sbjct: 1   MEKTQ-LRRQLANIRQSLFDQGFLDEQFVQLEELQDDANPNFVEEIVTLYYRDSSRLILS 59

Query: 61  IERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLL 120
           IE+AL+KSPLDFNKLD  MHQFKGSS+SIGAKKVKAE TQ REYC+AG+GEGCM+TFQ L
Sbjct: 60  IEQALQKSPLDFNKLDALMHQFKGSSSSIGAKKVKAECTQLREYCKAGSGEGCMRTFQQL 119

Query: 121 KRDYATLRRKLEAYFQQA 138
           K++Y +LR+KLEAYFQ A
Sbjct: 120 KKEYTSLRKKLEAYFQLA 137

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442470|ref|XP_002283686.1| PREDICTED: histidine-containing phosphotransfer protein 4 [Vitis vinifera] gi|297743193|emb|CBI36060.3| unnamed protein product [Vitis vinifera]

 Score =  223 bits (569), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 108/138 (78%), Positives = 121/138 (87%), Gaps = 1/138 (0%)

Query: 1   MERNQQLRRQLASMRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITT 60
           MER QQ  RQ+A MRQSLFDQG LDEQF+ LEELQDDANPNFVEEVVTL YRDSARL+  
Sbjct: 1   MERTQQ-HRQVAHMRQSLFDQGLLDEQFVQLEELQDDANPNFVEEVVTLFYRDSARLVLN 59

Query: 61  IERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLL 120
           I++AL+K+PLDF+KLD YMHQFKGS++SIGAKKVK E T FREYC+AGNGEGCMKTFQ L
Sbjct: 60  IDQALDKTPLDFSKLDSYMHQFKGSASSIGAKKVKGECTLFREYCKAGNGEGCMKTFQQL 119

Query: 121 KRDYATLRRKLEAYFQQA 138
           K+DYA LR+KLE YFQ A
Sbjct: 120 KKDYAVLRKKLETYFQLA 137

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723223|ref|NP_001234968.1| uncharacterized protein LOC100526849 [Glycine max] gi|255630982|gb|ACU15855.1| unknown [Glycine max]

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 107/139 (76%), Positives = 123/139 (88%), Gaps = 2/139 (1%)

Query: 1   MERNQQLRRQLASMRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITT 60
           M+RNQ  RRQ+A+M+QSLFDQG LDEQFI LEELQDDANPNFVEE+VTLHYRDS+RLI++
Sbjct: 1   MDRNQS-RRQVAAMKQSLFDQGFLDEQFIQLEELQDDANPNFVEEIVTLHYRDSSRLISS 59

Query: 61  IERAL-EKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQL 119
           IE+AL E++PLDFNKLD  MHQFKGSS+SIGAKKVKAE   FREYC  GN EGCM++FQ 
Sbjct: 60  IEQALKERNPLDFNKLDTLMHQFKGSSSSIGAKKVKAECNLFREYCRTGNAEGCMRSFQQ 119

Query: 120 LKRDYATLRRKLEAYFQQA 138
           LKR+YA LR+KLEAYFQ A
Sbjct: 120 LKREYAALRKKLEAYFQLA 138

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526081|ref|XP_003531648.1| PREDICTED: histidine-containing phosphotransfer protein 4-like [Glycine max]

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 107/139 (76%), Positives = 123/139 (88%), Gaps = 2/139 (1%)

Query: 1   MERNQQLRRQLASMRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITT 60
           M+RNQ  RRQ+A+M+QSLFDQG LDEQFI LEELQDDANPNFVEE+VTLHYRDS+RLI++
Sbjct: 1   MDRNQS-RRQVAAMKQSLFDQGLLDEQFIQLEELQDDANPNFVEEIVTLHYRDSSRLISS 59

Query: 61  IERAL-EKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQL 119
           IE+AL E++PLDFNKLD  MHQFKGSS+SIGAKKVK E   FREYC AGN EGCM++FQ 
Sbjct: 60  IEQALKERNPLDFNKLDTLMHQFKGSSSSIGAKKVKTECNLFREYCRAGNAEGCMRSFQQ 119

Query: 120 LKRDYATLRRKLEAYFQQA 138
           LKR+YA LR+KLEAYFQ A
Sbjct: 120 LKREYAALRKKLEAYFQLA 138

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454793|ref|XP_003597677.1| Histidine phosphotransfer protein [Medicago truncatula] gi|355486725|gb|AES67928.1| Histidine phosphotransfer protein [Medicago truncatula]

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 104/138 (75%), Positives = 121/138 (87%), Gaps = 1/138 (0%)

Query: 1   MERNQQLRRQLASMRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITT 60
           M+RN   RRQLA+M+QSLFDQGHLDEQFI LEELQDDANPNFVEE+VTL+YRDS+RLI++
Sbjct: 1   MDRNNS-RRQLAAMKQSLFDQGHLDEQFIQLEELQDDANPNFVEEIVTLYYRDSSRLISS 59

Query: 61  IERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLL 120
           +E+ LE+SPLDFNKLD  MHQFKGSS+SIGAKKVKAEST  REYC  GN EGC K+FQ +
Sbjct: 60  LEQTLERSPLDFNKLDTIMHQFKGSSSSIGAKKVKAESTLIREYCRTGNAEGCRKSFQQM 119

Query: 121 KRDYATLRRKLEAYFQQA 138
           KR+YA LR++LE YFQ A
Sbjct: 120 KREYAALRKRLETYFQLA 137

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549828|ref|XP_002515965.1| Histidine-containing phosphotransfer protein, putative [Ricinus communis] gi|223544870|gb|EEF46385.1| Histidine-containing phosphotransfer protein, putative [Ricinus communis]

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 107/138 (77%), Positives = 122/138 (88%), Gaps = 1/138 (0%)

Query: 1   MERNQQLRRQLASMRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITT 60
           MERN+ L RQ+A  RQSLFDQG LDEQF+ LEELQDDANPNFVEEVVTL+YRDSARLI +
Sbjct: 1   MERNK-LHRQVALARQSLFDQGFLDEQFLQLEELQDDANPNFVEEVVTLYYRDSARLILS 59

Query: 61  IERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLL 120
           IE+ LE+ PLDFNKLD +MHQFKGSS+SIGAKKVKAE T FREYC AGNGEGC +TFQ L
Sbjct: 60  IEQGLERHPLDFNKLDSHMHQFKGSSSSIGAKKVKAECTLFREYCRAGNGEGCARTFQQL 119

Query: 121 KRDYATLRRKLEAYFQQA 138
           K++YATL++KLE+YFQ A
Sbjct: 120 KKEYATLKKKLESYFQLA 137

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|133948416|gb|ABO43959.1| histidine-containing phosphotransferase [Euphorbia pulcherrima]

 Score =  218 bits (555), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 107/136 (78%), Positives = 119/136 (87%), Gaps = 1/136 (0%)

Query: 1   MERNQQLRRQLASMRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITT 60
           MER+Q L RQ+A  R++LFDQG LDEQF  LEELQDDANPNFVEEV TL+Y+DSAR+I  
Sbjct: 1   MERSQ-LHRQVALTREALFDQGFLDEQFHQLEELQDDANPNFVEEVATLYYKDSARIIFN 59

Query: 61  IERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLL 120
           IE+ALEKSPLDFNKLD  MHQFKGSSTSIGAKKVKAEST FREYC AGNGEGCMKTFQ L
Sbjct: 60  IEQALEKSPLDFNKLDSLMHQFKGSSTSIGAKKVKAESTLFREYCRAGNGEGCMKTFQQL 119

Query: 121 KRDYATLRRKLEAYFQ 136
           K++YA L++KLE YFQ
Sbjct: 120 KKEYAILKKKLETYFQ 135

Source: Euphorbia pulcherrima

Species: Euphorbia pulcherrima

Genus: Euphorbia

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454789|ref|XP_003597675.1| Histidine phosphotransfer protein [Medicago truncatula] gi|355486723|gb|AES67926.1| Histidine phosphotransfer protein [Medicago truncatula]

 Score =  217 bits (553), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 102/138 (73%), Positives = 120/138 (86%), Gaps = 1/138 (0%)

Query: 1   MERNQQLRRQLASMRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITT 60
           M+RN   RRQLA+M+QSLFDQGHLDEQFI LEELQDDANPNFVEE+VTL+YRDS+RLI++
Sbjct: 1   MDRNNS-RRQLAAMKQSLFDQGHLDEQFIQLEELQDDANPNFVEEIVTLYYRDSSRLISS 59

Query: 61  IERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLL 120
           +E+ LE+SPLDFNKLD  MHQFKGSS+SIGAKKVKAEST  REYC  GN EGC K+FQ +
Sbjct: 60  LEQTLERSPLDFNKLDTIMHQFKGSSSSIGAKKVKAESTLIREYCRTGNAEGCRKSFQQM 119

Query: 121 KRDYATLRRKLEAYFQQA 138
           K++Y  LR++LE YFQ A
Sbjct: 120 KKEYVALRKRLETYFQLA 137

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
TAIR|locus:2089900	154	AHP1 "histidine-containing pho	0.922	0.850	0.419	1.9e-26
TAIR|locus:2093817	156	AHP2 "histidine-containing pho	0.915	0.833	0.442	6.6e-26
TAIR|locus:2175643	155	AHP3 "histidine-containing pho	0.915	0.838	0.427	1.6e-24
TAIR|locus:2020868	157	AHP5 "histidine-containing pho	0.915	0.828	0.427	3.3e-24
TAIR|locus:2016339	154	HP6 "histidine phosphotransfer	0.922	0.850	0.333	4e-19
TAIR|locus:504955364	167	AT4G04402 "AT4G04402" [Arabido	0.380	0.323	0.464	1.2e-08
TAIR|locus:2183184	114	AT5G19710 "AT5G19710" [Arabido	0.338	0.421	0.395	2.5e-07
UNIPROTKB|Q884X1	118	PSPTO_1965 "Hpt domain protein	0.718	0.864	0.252	1.9e-05
POMBASE|SPBC725.02	295	mpr1 "histidine-containing res	0.661	0.318	0.278	0.0008

TAIR|locus:2089900 AHP1 "histidine-containing phosphotransmitter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 55/131 (41%), Positives = 90/131 (68%)

Query:     6 QLRRQLASMRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERAL 65
             Q ++ L    +SLF +G LD QF+ L++LQD++NP+FV +VVTL ++DS R++  +  +L
Sbjct:     5 QKQKSLQDYTKSLFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILNDLSLSL 64

Query:    66 EKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYA 125
             ++  +DF K+D ++HQ KGSS+SIGA++VK     FR +CE  N E C +  Q +K++Y 
Sbjct:    65 DQQVVDFKKVDPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEACHRCLQQVKQEYY 124

Query:   126 TLRRKLEAYFQ 136
              ++ +LE  F+
Sbjct:   125 LVKNRLETLFK 135

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;IMP

GO:0004871 "signal transducer activity" evidence=IEA

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA;NAS

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;IMP;TAS

GO:0005634 "nucleus" evidence=IDA

GO:0080036 "regulation of cytokinin mediated signaling pathway" evidence=IGI

GO:0009553 "embryo sac development" evidence=IGI

GO:0016049 "cell growth" evidence=IGI

GO:0051301 "cell division" evidence=IGI

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0015698 "inorganic anion transport" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

TAIR|locus:2093817 AHP2 "histidine-containing phosphotransmitter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 58/131 (44%), Positives = 88/131 (67%)

Query:     6 QLRRQLASMRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERAL 65
             QL+RQ      SL+ QG LD+QF  L++LQDD +P+FV EV++L + D  +LI+ + RAL
Sbjct:     7 QLQRQFRDYTISLYQQGFLDDQFTELKKLQDDGSPDFVSEVLSLFFEDCVKLISNMARAL 66

Query:    66 EKS-PLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDY 124
             + +  +DF+++   +HQ KGSS+S+GAK+VK     F+E CEA N EGC++  Q +  +Y
Sbjct:    67 DTTGTVDFSQVGASVHQLKGSSSSVGAKRVKTLCVSFKECCEAKNYEGCVRCLQQVDIEY 126

Query:   125 ATLRRKLEAYF 135
               L+ KL+  F
Sbjct:   127 KALKTKLQDMF 137

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;IDA

GO:0004871 "signal transducer activity" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA;NAS

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;IMP;TAS

GO:0005634 "nucleus" evidence=IDA

GO:0080036 "regulation of cytokinin mediated signaling pathway" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

TAIR|locus:2175643 AHP3 "histidine-containing phosphotransmitter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 56/131 (42%), Positives = 87/131 (66%)

Query:     6 QLRRQLASMRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERAL 65
             QL+R+      SL+ QG LD+QF  L++LQD+ +P+FV EVVTL + D  +LI+ + RAL
Sbjct:     7 QLQRRFCDFTISLYHQGFLDDQFTELKKLQDECSPDFVAEVVTLFFEDCEKLISNMARAL 66

Query:    66 EKSP-LDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDY 124
             +++  +DF  +   +HQ KGSS+S+GAK+VK      +E C++ N EGC++  Q +  +Y
Sbjct:    67 DQTGNVDFKLVGSSVHQLKGSSSSVGAKRVKGLCVTLKECCDSQNYEGCVRCLQQVDIEY 126

Query:   125 ATLRRKLEAYF 135
              TL+ KL+  F
Sbjct:   127 KTLKAKLQDLF 137

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;ISS

GO:0004871 "signal transducer activity" evidence=IEA

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;IMP

GO:0080036 "regulation of cytokinin mediated signaling pathway" evidence=IGI

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

TAIR|locus:2020868 AHP5 "histidine-containing phosphotransfer factor 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 56/131 (42%), Positives = 84/131 (64%)

Query:     6 QLRRQLASMRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERAL 65
             QL+RQ      SL+ QG LD QF  L +LQD+  P+FV EVV+L + D ++LI T+  +L
Sbjct:     8 QLQRQFQDYIVSLYQQGFLDNQFSELRKLQDEGTPDFVAEVVSLFFDDCSKLINTMSISL 67

Query:    66 EKSP-LDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDY 124
             E+   +DF ++D  +HQ KGSS+S+GA++VK     F+E C+  N EGC++  Q +  +Y
Sbjct:    68 ERPDNVDFKQVDSGVHQLKGSSSSVGARRVKNVCISFKECCDVQNREGCLRCLQQVDYEY 127

Query:   125 ATLRRKLEAYF 135
               L+ KL+  F
Sbjct:   128 KMLKTKLQDLF 138

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;TAS

GO:0004871 "signal transducer activity" evidence=IEA

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS;IDA

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;IMP

GO:0080036 "regulation of cytokinin mediated signaling pathway" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2016339 HP6 "histidine phosphotransfer protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 44/132 (33%), Positives = 82/132 (62%)

Query:     6 QLRRQLASMRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERAL 65
             +L+  +  +  SLF QG LDEQF+ L++LQD+ +PNFV +V+ +++ +S +L+  +   L
Sbjct:     8 RLQADINRLLASLFHQGVLDEQFLQLQQLQDETSPNFVYDVINIYFDESEKLLRNLRLLL 67

Query:    66 -EKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDY 124
              ++   D+ K+  +++Q  GSS+SIGA++V+     FR   E  N  GC++  ++++ +Y
Sbjct:    68 MDREFSDYKKIGLHLNQLVGSSSSIGARRVRNVCVAFRSASELSNRPGCLRGLEVVEHEY 127

Query:   125 ATLRRKLEAYFQ 136
               L+  +   FQ
Sbjct:   128 HYLKNMMHELFQ 139

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;IDA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=ISS

GO:0009735 "response to cytokinin stimulus" evidence=IEP

GO:0009736 "cytokinin mediated signaling pathway" evidence=IMP

GO:0009927 "histidine phosphotransfer kinase activity" evidence=IDA

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:504955364 AT4G04402 "AT4G04402" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 26/56 (46%), Positives = 41/56 (73%)

Query:    22 GHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSP--LDFNKL 75
             G LD+QF  L++LQDD +P+FV EV++L + D  +LI+ + RAL+KS   +DF ++
Sbjct:    24 GFLDDQFTELKKLQDDGSPDFVAEVLSLFFEDCVKLISNMARALDKSTGTVDFGQM 79

GO:0005575 "cellular_component" evidence=ND

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS

TAIR|locus:2183184 AT5G19710 "AT5G19710" [Arabidopsis thaliana (taxid:3702)]

 Score = 83 (34.3 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
 Identities = 19/48 (39%), Positives = 27/48 (56%)

Query:    89 IGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYATLRRKLEAYFQ 136
             IGA KV  E  +   + +AGN EG       +K++++ LR K E YFQ
Sbjct:    52 IGAIKVVKELKKANTFLKAGNIEGVKGALPDIKKEHSELRAKFETYFQ 99

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q884X1 PSPTO_1965 "Hpt domain protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 27/107 (25%), Positives = 49/107 (45%)

Query:    23 HLDEQFI-LLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQ 81
             HLD   +  L+E+ +D  P  ++    +  +DS + +  +  A+E   LD  +L    H 
Sbjct:     4 HLDYSVLSALQEVMEDEYPTLLD----VFLKDSEQRLAQLRLAVETGNLDLQELSLTAHS 59

Query:    82 FKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYATLR 128
             FKGSS+++GA ++     Q  E     +          +  +Y T+R
Sbjct:    60 FKGSSSNMGALQLSQLCHQLEERARQNDSSDLRDLIGRIGSEYLTVR 106

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

POMBASE|SPBC725.02 mpr1 "histidine-containing response regulator phosphotransferase Mpr1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 99 (39.9 bits), Expect = 0.00080, P = 0.00080
 Identities = 27/97 (27%), Positives = 45/97 (46%)

Query:    20 DQGHLDEQ-FILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGY 78
             D+  +D   F  L E+ DD    F + +V  ++  +   I  +++ALE    D  KL   
Sbjct:   162 DKQLIDHSVFDQLLEMDDDDEHEFSKSIVWNYFEQAETTIADLQKALEAK--DLKKLSSL 219

Query:    79 MHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMK 115
              H  KGSS  +G  K++    + + Y    + +G MK
Sbjct:   220 GHFLKGSSAVLGLTKMRKVCERIQNYGSLRSRDGVMK 256


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.133   0.373    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      142       142   0.00091  102 3  11 22  0.43    31
                                                     30  0.47    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  538 (57 KB)
  Total size of DFA:  122 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.68u 0.12s 15.80t   Elapsed:  00:00:00
  Total cpu time:  15.68u 0.12s 15.80t   Elapsed:  00:00:00
  Start:  Thu May  9 21:27:08 2013   End:  Thu May  9 21:27:08 2013

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0007234 "osmosensory signaling via phosphorelay pathway" evidence=IGI

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=IMP

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IGI

GO:0034599 "cellular response to oxidative stress" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LU15	AHP4_ARATH	No assigned EC number	0.7241	0.8169	0.9133	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	142
pfam01627	87	pfam01627, Hpt, Hpt domain	0.001

>gnl|CDD|216615 pfam01627, Hpt, Hpt domain

 Score = 35.8 bits (83), Expect = 0.001
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 2/79 (2%)

Query: 53  DSARLITTIERALEKSPL-DFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGE 111
           ++  L+  +E+AL      D   L    H  KGS+ S+G   +   + +  +   AG   
Sbjct: 9   EAPELLEQLEQALLALEAEDLEALFRAAHTLKGSAGSLGLPALAELAHELEDLLRAGRDG 68

Query: 112 GCM-KTFQLLKRDYATLRR 129
             + +    LK +   LR 
Sbjct: 69  ELLLQALDELKDELEALRA 87

The histidine-containing phosphotransfer (HPt) domain is a novel protein module with an active histidine residue that mediates phosphotransfer reactions in the two-component signaling systems. A multistep phosphorelay involving the HPt domain has been suggested for these signaling pathways. The crystal structure of the HPt domain of the anaerobic sensor kinase ArcB has been determined. The domain consists of six alpha helices containing a four-helix bundle-folding. The pattern of sequence similarity of the HPt domains of ArcB and components in other signaling systems can be interpreted in light of the three-dimensional structure and supports the conclusion that the HPt domains have a common structural motif both in prokaryotes and eukaryotes. In S. cerevisiae ypd1p this domain has been shown to contain a binding surface for Ssk1p (response regulator receiver domain containing protein pfam00072). Length = 87

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	142
KOG4747	150	consensus Two-component phosphorelay intermediate	99.88
COG2198	122	ArcB FOG: HPt domain [Signal transduction mechanis	99.68
PF01627	90	Hpt: Hpt domain; InterPro: IPR008207 Two-component	99.66
smart00073	87	HPT Histidine Phosphotransfer domain. Contains an	99.54
cd00088	94	HPT Histidine Phosphotransfer domain, involved in	99.44
TIGR02956	968	TMAO_torS TMAO reductase sytem sensor TorS. This p	99.33
PRK10618	894	phosphotransfer intermediate protein in two-compon	99.1
PRK11091	779	aerobic respiration control sensor protein ArcB; P	99.06
PRK11107	919	hybrid sensory histidine kinase BarA; Provisional	98.76
PRK11466	914	hybrid sensory histidine kinase TorS; Provisional	98.66
COG0643	716	CheA Chemotaxis protein histidine kinase and relat	98.2
PRK10547	670	chemotaxis protein CheA; Provisional	98.09
PRK09959	1197	hybrid sensory histidine kinase in two-component r	97.59
PRK15347	921	two component system sensor kinase SsrA; Provision	96.76
PF13779	820	DUF4175: Domain of unknown function (DUF4175)	90.99
TIGR02302	851	aProt_lowcomp conserved hypothetical protein TIGR0	89.85
PF07743	78	HSCB_C: HSCB C-terminal oligomerisation domain; In	88.64
TIGR03042	142	PS_II_psbQ_bact photosystem II protein PsbQ. This	83.62
TIGR00984	378	3a0801s03tim44 mitochondrial import inner membrane	82.08
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	80.06

>KOG4747 consensus Two-component phosphorelay intermediate involved in MAP kinase cascade regulation [Signal transduction mechanisms]

Probab=99.88  E-value=7.4e-22  Score=142.83  Aligned_cols=133  Identities=51%  Similarity=0.826  Sum_probs=127.1

Q ss_pred             HHHHHHHHHHhcccccCChHHHHHHHHhhcccCChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhccc
Q 045628            6 QLRRQLASMRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGS   85 (142)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~lD~~~~~L~~L~~~~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGs   85 (142)
                      .+....++|-.+++++|++|++|.+|++|+++..|+|+.+++..|++++++.|..++.|+..+- |+..+...-|.+|||
T Consensus         7 ~~q~~~~d~~~sl~~qgild~qF~qlq~lqD~~~p~fv~ev~~~fF~~s~~~i~~~r~ald~~~-d~k~~~~~~hqlkgs   85 (150)
T KOG4747|consen    7 SMQRDVSDYTKSLFDQGILDSQFLQLQELQDDSSPDFVEEVVGLFFEDSERLINNLRLALDCER-DFKKLGSHVHQLKGS   85 (150)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHHHHHHhhHh-HHHHHHHHHHHccCc
Confidence            4667889999999999999999999999999999999999999999999999999999998873 599999999999999


Q ss_pred             ccccChHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 045628           86 STSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYATLRRKLEAYFQQAL  139 (142)
Q Consensus        86 s~~iGa~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~~  139 (142)
                      |.+|||.++..+|..+...|+.++.+++...+++++.+|..+...|+++++.+|
T Consensus        86 sssIGa~kvk~~c~~~~~~~~~~n~egcvr~l~~v~ie~~~lkkkL~~~f~L~r  139 (150)
T KOG4747|consen   86 SSSIGALKVKKVCVGFNEFCEAGNIEGCVRCLQQVKIEYSLLKKKLETLFQLER  139 (150)
T ss_pred             hhhhhHHHHHHHHHHHHHHHhhccchhHhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998765

>COG2198 ArcB FOG: HPt domain [Signal transduction mechanisms]

Probab=99.68  E-value=9.6e-16  Score=108.33  Aligned_cols=96  Identities=20%  Similarity=0.342  Sum_probs=87.8

Q ss_pred             CChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHHHHHHHHHc-CChhhHHHH
Q 045628           38 ANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEA-GNGEGCMKT  116 (142)
Q Consensus        38 ~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~-~~~~~~~~~  116 (142)
                      |+++++.+++..|+++.+..+..+..++..+|  +..+.+.||+|||+|+++|+..|+..|.++|..++. ...+.....
T Consensus        20 ~~~~~~~~ll~~f~~~~~~~l~~l~~~l~~~d--~~~~~~~aH~lkg~a~~lg~~~L~~~~~~lE~~~~~~~~~~~~~~~   97 (122)
T COG2198          20 GDPDLLRELLAMFLEEAPAQLEQLESALAAED--NDGLARLAHRLKGSAASLGLPALAQLCQQLEDALRSGASLEELEEL   97 (122)
T ss_pred             CChHHHHHHHHHHHHHhHHHHHHHHHHHhcCC--cHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence            67999999999999999999999999999998  999999999999999999999999999999999999 677799999


Q ss_pred             HHHHHHH--HHHHHHHHHHHH
Q 045628          117 FQLLKRD--YATLRRKLEAYF  135 (142)
Q Consensus       117 ~~~l~~~--~~~~~~~L~~~l  135 (142)
                      +.+++.+  +..+...+.++.
T Consensus        98 i~~l~~~~~~~~~~~~~~~~~  118 (122)
T COG2198          98 IAELKDELQLDVLALELLTYL  118 (122)
T ss_pred             HHHHHHHhcchHHHHHHHHHh
Confidence            9999999  666666555554

>PF01627 Hpt: Hpt domain; InterPro: IPR008207 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []

Probab=99.66  E-value=7.2e-16  Score=101.73  Aligned_cols=83  Identities=20%  Similarity=0.388  Sum_probs=72.6

Q ss_pred             HHHHHHHHhHHHHHHHHHHHH---hcCCCCHHHHHHHhhhhcccccccChHHHHHHHHHHHHHHHcCChhh---HHHHHH
Q 045628           45 EVVTLHYRDSARLITTIERAL---EKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEG---CMKTFQ  118 (142)
Q Consensus        45 ell~~Fl~d~~~~l~~L~~al---~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~~~~~~---~~~~~~  118 (142)
                      +|+..|+++.++.+..|..++   ..+|  ++.+.+.+|+|||+++++|+.++..+|..+|..++.++...   +...+.
T Consensus         1 ell~~f~~~~~~~~~~l~~~~~~~~~~d--~~~l~~~~H~lkG~a~~~g~~~l~~~~~~lE~~~~~~~~~~~~~~~~~~~   78 (90)
T PF01627_consen    1 ELLDIFLEEAPEDLEQLEQALQALEQED--WEELRRLAHRLKGSAGNLGAPRLAELAEQLEQALKSGDKPEAEELEQLLD   78 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCSSHHCH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTHHHHSHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhHhh--HHHHHHHHHHHhhhHHhcCHHHHHHHHHHHHHHHHcCCccchhHHHHHHH
Confidence            689999999999999999999   8777  99999999999999999999999999999999999987777   555556


Q ss_pred             HHHHHHHHHHH
Q 045628          119 LLKRDYATLRR  129 (142)
Q Consensus       119 ~l~~~~~~~~~  129 (142)
                      .+...++++.+
T Consensus        79 ~l~~~l~~l~~   89 (90)
T PF01627_consen   79 ELEAMLEQLRQ   89 (90)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhC
Confidence            65555555543

Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents a domain present at the N terminus in proteins which undergo autophosphorylation. The group includes, the gliding motility regulatory protein from Myxococcus xanthus and a number of bacterial chemotaxis proteins.; GO: 0004871 signal transducer activity, 0000160 two-component signal transduction system (phosphorelay); PDB: 3KYJ_A 3KYI_A 3IQT_A 1Y6D_A 2LD6_A 1TQG_A 2R25_A 1OXB_A 1QSP_B 1C03_B ....

>smart00073 HPT Histidine Phosphotransfer domain

Probab=99.54  E-value=1.1e-14  Score=96.30  Aligned_cols=86  Identities=19%  Similarity=0.199  Sum_probs=73.9

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 045628           44 EEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRD  123 (142)
Q Consensus        44 ~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~  123 (142)
                      ++++..|+++.++.+..|..++..+|  +..+.+.+|+|||+|+++|+..|..+|..+|..++..... .......+...
T Consensus         1 ~e~~~~f~~~~~~~l~~l~~~~~~~~--~~~l~~~~H~LKG~a~~~g~~~l~~~~~~lE~~~~~~~~~-~~~~~~~l~~~   77 (87)
T smart00073        1 REELAEFLQSLEEGLLELEKALDAQD--VNEIFRAAHTLKGSAGSLGLQQLAQLCHQLENLLDAARSG-EVELTPDLLDL   77 (87)
T ss_pred             ChHHHHHHHHHHHHHHHHHhCcCHhH--HHHHHHHHHhhhhhHHhcCHHHHHHHHHHHHHHHHHHHcC-CCCCCHHHHHH
Confidence            36899999999999999999998887  9999999999999999999999999999999998874433 33566777777


Q ss_pred             HHHHHHHHH
Q 045628          124 YATLRRKLE  132 (142)
Q Consensus       124 ~~~~~~~L~  132 (142)
                      |.++...|+
T Consensus        78 ~~~~~~~l~   86 (87)
T smart00073       78 LLELVDVLK   86 (87)
T ss_pred             HHHHHHHHc
Confidence            777777654

Contains an active histidine residue that mediates phosphotransfer reactions. Domain detected only in eubacteria. This alignment is an extension to that shown in the Cell structure paper.

>cd00088 HPT Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is modulated by phosphorylation and dephosphorylation of a conserved aspartic acid residue; two-component proteins are abundant in most eubacteria; In E

Probab=99.44  E-value=5.7e-13  Score=89.64  Aligned_cols=84  Identities=24%  Similarity=0.360  Sum_probs=68.4

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHh----cCCCCHHHHHHHhhhhcccccccChHHHHHHHHHHHHHHHcCChh--hHHHHH
Q 045628           44 EEVVTLHYRDSARLITTIERALE----KSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGE--GCMKTF  117 (142)
Q Consensus        44 ~ell~~Fl~d~~~~l~~L~~al~----~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~~~~~--~~~~~~  117 (142)
                      .+++..|+++.++.+..|..++.    .+|  +..+...+|+|||+++++|+..|...|..+|.+++.+...  ......
T Consensus         2 ~~l~~~f~~~~~~~l~~l~~~~~~~~~~~d--~~~l~~~~H~LkGsa~~~G~~~l~~~~~~lE~~~~~~~~~~~~~~~~~   79 (94)
T cd00088           2 EELLELFLEEAEELLEELERALLELEDAED--LNEIFRAAHTLKGSAASLGLQRLAQLAHQLEDLLDALRDGLEVTPELI   79 (94)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCHHH--HHHHHHHHHhhhhHHhcCChHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence            47899999999999999999999    676  9999999999999999999999999999999999985432  333334


Q ss_pred             HHHHHHHHHHHH
Q 045628          118 QLLKRDYATLRR  129 (142)
Q Consensus       118 ~~l~~~~~~~~~  129 (142)
                      ..+...+..+..
T Consensus        80 ~~~~~~~d~l~~   91 (94)
T cd00088          80 DLLLDALDALKA   91 (94)
T ss_pred             HHHHHHHHHHHH
Confidence            444444444433

coli there are 62 two-component proteins involved in a variety of processes such as chemotaxis, osmoregulation, metabolism and transport 1; also present in both Gram positive and Gram negative pathogenic bacteria where they regulate basic housekeeping functions and control expression of toxins and other proteins important for pathogenesis; in archaea and eukaryotes, two-component pathways constitute a very small number of all signaling systems; in fungi they mediate environmental stress responses and, in pathogenic yeast, hyphal development. In Dictyostelium and in plants, they are i

>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS

Probab=99.33  E-value=8.4e-12  Score=112.45  Aligned_cols=93  Identities=17%  Similarity=0.265  Sum_probs=86.8

Q ss_pred             CChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHHHHHHHHHcCChhhHHHHH
Q 045628           38 ANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTF  117 (142)
Q Consensus        38 ~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~~~~~~~~~~~  117 (142)
                      .+++.+.+++..|.++.+..+..|..++..+|  +..++..+|+|||+++++|+.++..+|..||..++.++.  ....+
T Consensus       876 ~~~~~~~~~~~~f~~~~~~~~~~l~~~~~~~d--~~~~~~~~H~lkg~~~~~g~~~l~~~~~~le~~~~~~~~--~~~~~  951 (968)
T TIGR02956       876 LGVEKVRQLVALFKTSSAEQLEELSAARAVDD--DAQIKKLAHKLKGSAGSLGLTQLTQLCQQLEKQGKTGAL--ELSDI  951 (968)
T ss_pred             cCcHHHHHHHHHHHHhhHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcccCCc--chhHH
Confidence            46788999999999999999999999999998  999999999999999999999999999999999999888  45778


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 045628          118 QLLKRDYATLRRKLEAY  134 (142)
Q Consensus       118 ~~l~~~~~~~~~~L~~~  134 (142)
                      ..++..|.++..+|++|
T Consensus       952 ~~l~~~~~~~~~~l~~~  968 (968)
T TIGR02956       952 DEIKQAWQASKTALDQW  968 (968)
T ss_pred             HHHHHHHHHHHHHHHhC
Confidence            99999999999998864

This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).

>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional

Probab=99.10  E-value=4.3e-10  Score=102.32  Aligned_cols=83  Identities=12%  Similarity=0.091  Sum_probs=77.3

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 045628           44 EEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRD  123 (142)
Q Consensus        44 ~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~  123 (142)
                      ..++..|++++|.++..|..++.++|  +..+...||+|||+++++|+..+.++|..||..++.++...+...+.+|...
T Consensus       810 s~~~~lF~~t~~~di~~L~~~~~~~D--~~~l~~~aHrLKG~~aml~l~~l~~~~~~LE~~i~~~~~~~i~~~i~~id~~  887 (894)
T PRK10618        810 SDYYALFVDTVPDDVKRLYTEAATSD--FASLAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDEPGIENYISDIDSF  887 (894)
T ss_pred             hhHHHHHHHhhHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHH
Confidence            45668999999999999999999998  9999999999999999999999999999999999999999999988888887


Q ss_pred             HHHHH
Q 045628          124 YATLR  128 (142)
Q Consensus       124 ~~~~~  128 (142)
                      +.++.
T Consensus       888 v~~ll  892 (894)
T PRK10618        888 VKSLL  892 (894)
T ss_pred             HHHHh
Confidence            77654

>PRK11091 aerobic respiration control sensor protein ArcB; Provisional

Probab=99.06  E-value=1.5e-09  Score=96.39  Aligned_cols=100  Identities=14%  Similarity=0.214  Sum_probs=93.6

Q ss_pred             CChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHHHHHHHHHcCChhhHHHHH
Q 045628           38 ANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTF  117 (142)
Q Consensus        38 ~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~~~~~~~~~~~  117 (142)
                      -++..+.+.+..|.+..+..+..+..++..+|  +..+...||+|||+++++|+..++.+|..+|.....+..+.....+
T Consensus       678 ~g~~~~~~~l~~~~~~~~~~~~~l~~~l~~~d--~~~~~~~ah~l~g~~~~~g~~~l~~~~~~le~~~~~~~~~~~~~~~  755 (779)
T PRK11091        678 VGPKLITDSLAVFEKMMPGYLSVLDSNLTARD--QKGIVEEAHKIKGAAGSVGLRHLQQLAQQIQSPDLPAWWDNVQDWV  755 (779)
T ss_pred             cCHHHHHHHHHHHHHhhHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCcCccccHHHHHHHH
Confidence            35567888999999999999999999999998  9999999999999999999999999999999998888899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhC
Q 045628          118 QLLKRDYATLRRKLEAYFQQAL  139 (142)
Q Consensus       118 ~~l~~~~~~~~~~L~~~l~~~~  139 (142)
                      ++++.+|+.....|+.|+...+
T Consensus       756 ~~l~~~~~~~~~~~~~~~~~~~  777 (779)
T PRK11091        756 EELKNEWRHDVEVLKAWLAQAE  777 (779)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999998754

>PRK11107 hybrid sensory histidine kinase BarA; Provisional

Probab=98.76  E-value=1.9e-07  Score=83.87  Aligned_cols=98  Identities=14%  Similarity=0.219  Sum_probs=87.8

Q ss_pred             cCChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHHHHHHHHHcC-ChhhHHH
Q 045628           37 DANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAG-NGEGCMK  115 (142)
Q Consensus        37 ~~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~~-~~~~~~~  115 (142)
                      .+.++...+++..|.++.+..+..|..++...+  +..+...+|++||+++++|+..+..+|..+|..++.+ ..+.+..
T Consensus       820 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~h~l~g~~~~~g~~~l~~~~~~le~~~~~~~~~~~~~~  897 (919)
T PRK11107        820 AGKPDLARDMLQMLLDFLPEVRNKVEEALAGED--PEGLLDLIHKLHGSCSYSGVPRLKKLCQLIEQQLRSGTSVEDLEP  897 (919)
T ss_pred             CCCHHHHHHHHHHHHHhHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCChhhHHH
Confidence            357888899999999999999999999999987  9999999999999999999999999999999999976 4567778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 045628          116 TFQLLKRDYATLRRKLEAYFQ  136 (142)
Q Consensus       116 ~~~~l~~~~~~~~~~L~~~l~  136 (142)
                      .+.++..++.++..+++.++.
T Consensus       898 ~~~~~~~~~~~~~~~~~~~~~  918 (919)
T PRK11107        898 ELLELLDEMENVARAAKKVLS  918 (919)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh
Confidence            888888888888888887764

>PRK11466 hybrid sensory histidine kinase TorS; Provisional

Probab=98.66  E-value=1.3e-07  Score=85.23  Aligned_cols=91  Identities=19%  Similarity=0.243  Sum_probs=75.4

Q ss_pred             CChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHHHHHHHHHcCChhhHHHHH
Q 045628           38 ANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTF  117 (142)
Q Consensus        38 ~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~~~~~~~~~~~  117 (142)
                      .+++.+.+++..|.++.+..+..+..+...+|  +..+...||+|||+++++|+..+...|..+|..+...         
T Consensus       820 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~ah~lkg~~~~lg~~~l~~~~~~le~~~~~~---------  888 (914)
T PRK11466        820 MGTEKIHEWLALFKQHALPLLDEIDIARASQD--SEKIKRAAHQLKSSCSSLGMRQASQACAQLEQQPLSA---------  888 (914)
T ss_pred             cCHHHHHHHHHHHHHhhHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCCCc---------
Confidence            35666789999999999999999999999998  9999999999999999999999999999999875431         


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhC
Q 045628          118 QLLKRDYATLRRKLEAYFQQAL  139 (142)
Q Consensus       118 ~~l~~~~~~~~~~L~~~l~~~~  139 (142)
                      ..+...+.+....|+.|+..+.
T Consensus       889 ~~~~~~~~~~~~~~~~~~~~~~  910 (914)
T PRK11466        889 PLPHEEITRSVAALEAWLAKKD  910 (914)
T ss_pred             hhHHHHHHHHHHHHHHHHHhCc
Confidence            2344566666667777776543

>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.20  E-value=1.3e-05  Score=71.88  Aligned_cols=90  Identities=18%  Similarity=0.222  Sum_probs=66.8

Q ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHhcCC---C---CHHHHHHHhhhhcccccccChHHHHHHHHHHHH---HHHcCCh
Q 045628           40 PNFVEEVVTLHYRDSARLITTIERALEKSP---L---DFNKLDGYMHQFKGSSTSIGAKKVKAESTQFRE---YCEAGNG  110 (142)
Q Consensus        40 ~~~l~ell~~Fl~d~~~~l~~L~~al~~~d---~---D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~---~~~~~~~  110 (142)
                      +....+++..|+.++++.+..|..++-.-+   -   -...+.+.||+|||+|+.+|+..+..+|..+|.   +.|++..
T Consensus         3 ~~~~~~~~~~F~~Ea~e~l~~l~~~Ll~LE~~~~d~~~ln~ifRaaHTlKG~a~~~g~~~l~~l~H~~E~~ld~~r~g~~   82 (716)
T COG0643           3 SMDMEEILEDFLEEAEELLQALEQALLALEPDPEDLDLLNAIFRAAHTLKGGAGTLGLTTLAELAHAMEDLLDALRNGEL   82 (716)
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHhHhhccCCCCCHHHHHHHHHHHHhhhhhhhhcChhHHHHHHHHHHHHHHHHhcCCc
Confidence            345678999999999999999998663211   1   256789999999999999999999999999996   4666766


Q ss_pred             hhHHHHHHHHHHHHHHHHH
Q 045628          111 EGCMKTFQLLKRDYATLRR  129 (142)
Q Consensus       111 ~~~~~~~~~l~~~~~~~~~  129 (142)
                      .--..++..+-++...+..
T Consensus        83 ~~~~~l~d~~l~~~D~l~~  101 (716)
T COG0643          83 ELTSELLDLLLEALDALEE  101 (716)
T ss_pred             cCcHHHHHHHhhhhHHHHH
Confidence            5444444444444333333

>PRK10547 chemotaxis protein CheA; Provisional

Probab=98.09  E-value=2.4e-05  Score=69.66  Aligned_cols=63  Identities=13%  Similarity=0.273  Sum_probs=52.8

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHhc---CCC---CHHHHHHHhhhhcccccccChHHHHHHHHHHHHHHH
Q 045628           44 EEVVTLHYRDSARLITTIERALEK---SPL---DFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCE  106 (142)
Q Consensus        44 ~ell~~Fl~d~~~~l~~L~~al~~---~d~---D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~  106 (142)
                      .+++..|++++.+.++.|...+-.   ...   ....+.+.+|+|||+|+.+|+..+..+|..+|....
T Consensus         4 ~~~l~~F~~Ea~E~l~~le~~Ll~LE~~p~d~e~in~lFRa~HTiKG~a~~~g~~~i~~l~H~~E~lld   72 (670)
T PRK10547          4 SDFYQTFFDEADELLADMEQHLLVLDPEAPDAEQLNAIFRAAHSIKGGAGTFGFTVLQETTHLMENLLD   72 (670)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhhHHhhcCchHHHHHHHHHHHHHH
Confidence            578999999999999999988742   111   256788999999999999999999999999996543

>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional

Probab=97.59  E-value=0.0021  Score=60.01  Aligned_cols=96  Identities=13%  Similarity=0.225  Sum_probs=81.3

Q ss_pred             CChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHHHHHHHHHcCC-hhhHHHH
Q 045628           38 ANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGN-GEGCMKT  116 (142)
Q Consensus        38 ~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~~~-~~~~~~~  116 (142)
                      .+...+.+++..+.......+..+..+...++  ...+..++|++||++..+|+..+...|.++|..+...+ .+.+...
T Consensus      1097 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~g~~~~l~~~~l~~~~~~~e~~~~~~~~~~~l~~~ 1174 (1197)
T PRK09959       1097 NDLQLMQEILMTFQHETHKDLPAAFHALEAGD--NRTFHQCIHRIHGAANILNLQKLINISHQLEITPVSDDSKPEILQL 1174 (1197)
T ss_pred             CCHHHHHHHHHHHHHhhHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhhcCCchHHHHHH
Confidence            46678899999999999999999999999998  99999999999999999999999999999998887654 4566666


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 045628          117 FQLLKRDYATLRRKLEAYF  135 (142)
Q Consensus       117 ~~~l~~~~~~~~~~L~~~l  135 (142)
                      +..+..........+..|+
T Consensus      1175 ~~~~~~~~~~~~~~~~~~~ 1193 (1197)
T PRK09959       1175 LNSVKEHIAELDQEIAVFC 1193 (1197)
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            7777766666666666665

>PRK15347 two component system sensor kinase SsrA; Provisional

Probab=96.76  E-value=0.0069  Score=54.71  Aligned_cols=77  Identities=19%  Similarity=0.279  Sum_probs=57.6

Q ss_pred             HHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 045628           46 VVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYA  125 (142)
Q Consensus        46 ll~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~  125 (142)
                      +-..+.+.....+..+..+++.++    .+...+|++||+++.+|+..+...|..+|..++.+....... +..+++.+.
T Consensus       838 l~~~~~~~l~~~~~~~~~~~~~~~----~l~~~~h~i~~~~~~~g~~~l~~~~~~~e~~~~~~~~~~~~~-~~~~~~~~~  912 (921)
T PRK15347        838 LNSKLYQSLLLLLAQIEQAVENQE----VLSQLLHTLKGCAGQAGLTELQCAVIDLENALETGEILSLEE-LTDLRELIH  912 (921)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCHH----HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHH
Confidence            444555566677888888887663    789999999999999999999999999999998875543332 344444444


Q ss_pred             HH
Q 045628          126 TL  127 (142)
Q Consensus       126 ~~  127 (142)
                      .+
T Consensus       913 ~~  914 (921)
T PRK15347        913 AL  914 (921)
T ss_pred             HH
Confidence            33

>PF13779 DUF4175: Domain of unknown function (DUF4175)

Probab=90.99  E-value=5  Score=37.16  Aligned_cols=118  Identities=11%  Similarity=0.173  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHhc--ccccCChHHHHHHHHhhc--------ccCChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHH
Q 045628            6 QLRRQLASMRQS--LFDQGHLDEQFILLEELQ--------DDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKL   75 (142)
Q Consensus         6 ~~~~~~~~~~~~--~~~~g~lD~~~~~L~~L~--------~~~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~   75 (142)
                      ++++....+|.-  -.+.|=|..+-.+|+.-+        .+.+.+=+.++++.+.+-..+.+.+|.+-..+..  -.. 
T Consensus       447 ~~~~v~~~LW~lAl~iEdG~ls~A~~~Lr~AQe~L~eAL~~gAs~eEI~rLm~eLR~A~~~ym~~LAeq~~~~~--~~~-  523 (820)
T PF13779_consen  447 ALREVADLLWDLALRIEDGDLSDAERRLRAAQEALREALERGASDEEIARLMQELREAMQDYMQALAEQAQRNP--QQQ-  523 (820)
T ss_pred             HHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhCc--ccc-
Confidence            344444444443  344466666544444322        2345566778888888888888888877766553  111 


Q ss_pred             HHHhhhhcccccccChHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHH
Q 045628           76 DGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYATLR  128 (142)
Q Consensus        76 ~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~  128 (142)
                        ..+..-+.+.+++-..|..+...||+.+++|+.+++.++++++++-+++++
T Consensus       524 --~~p~~~~~~~~~~~~dL~~mmd~ie~la~~G~~~~A~q~L~qlq~mmenmq  574 (820)
T PF13779_consen  524 --DQPPDQGNSQMMSQQDLQRMMDRIEELARSGRMDEARQLLEQLQQMMENMQ  574 (820)
T ss_pred             --cCcccchhhhccCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc
Confidence              111124667799999999999999999999999999999999988877654

>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302

Probab=89.85  E-value=10  Score=35.30  Aligned_cols=117  Identities=10%  Similarity=0.177  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHhc--ccccCChHHHHHHHHhh--------cccCChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHH
Q 045628            6 QLRRQLASMRQS--LFDQGHLDEQFILLEEL--------QDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKL   75 (142)
Q Consensus         6 ~~~~~~~~~~~~--~~~~g~lD~~~~~L~~L--------~~~~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~   75 (142)
                      ++++....+|.-  ..+.|-|..+-..|+.-        ..+-+++=+.+|+..+.+-..+.+.+|.+-..+.. +-.. 
T Consensus       478 ~l~~v~~~LW~lAl~iEdG~ls~A~~~Lr~AQ~aL~eAL~~gAsdeEI~~Lm~eLR~Am~~ym~~LAeq~~~~~-~~~~-  555 (851)
T TIGR02302       478 ALRDVADNLWSLALGIEDGDLSDAERRLRAAQDALKDALERGASDEEIKQLTDKLRAAMQTYMRQLAQQLRNNP-QQLA-  555 (851)
T ss_pred             HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-cccc-
Confidence            344444444443  34447776655454433        22445666788888888888888888887666442 0001 


Q ss_pred             HHHhhhhcccccccChHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHH
Q 045628           76 DGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYATLR  128 (142)
Q Consensus        76 ~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~  128 (142)
                          -..-+.+.+++-..|..+...||+.+++|+.+++.+++.++++-+++++
T Consensus       556 ----~~~~~~~~~l~~~dLq~Mmd~ieela~~G~~~~A~qlL~qlq~mmenlq  604 (851)
T TIGR02302       556 ----RPLDPNTKVLRQQDLQNMMDQIENLARSGDRDQAKQLLSQLQQMMNNLQ  604 (851)
T ss_pred             ----ccCCccccccCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence                1112346789999999999999999999999999999999999888876

Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.

>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein)

Probab=88.64  E-value=4.4  Score=25.84  Aligned_cols=51  Identities=20%  Similarity=0.275  Sum_probs=36.7

Q ss_pred             HHhhcccCChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhc
Q 045628           31 LEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFK   83 (142)
Q Consensus        31 L~~L~~~~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LK   83 (142)
                      |......++.+-+.++....-......+..|..++..+|  |..+....++||
T Consensus        17 le~~~~~~~~~~L~~l~~~~~~~~~~~~~~l~~~f~~~d--~~~A~~~~~kLk   67 (78)
T PF07743_consen   17 LEEAQNSDDEAELEELKKEIEERIKELIKELAEAFDAKD--WEEAKEALRKLK   67 (78)
T ss_dssp             HHHHCCCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHH
T ss_pred             HHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCc--HHHHHHHHHHHH
Confidence            333433245566778888888888888888888888777  888888888875

HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.

>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ

Probab=83.62  E-value=12  Score=27.40  Aligned_cols=74  Identities=12%  Similarity=0.250  Sum_probs=47.0

Q ss_pred             HhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccCh---------------------HHHHHHHHHHHHHHHcCCh
Q 045628           52 RDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGA---------------------KKVKAESTQFREYCEAGNG  110 (142)
Q Consensus        52 ~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa---------------------~~L~~~c~~lE~~~~~~~~  110 (142)
                      ..+.+.+.+|+..+++++  |..++...|.   .++.++-                     ..|.+--..|-.+++.+|.
T Consensus        46 ~~~~~r~~eLk~lI~kk~--W~~vrn~irg---p~g~Lr~dl~~l~~sl~p~dqk~a~~L~~~Lf~~L~~LD~AA~~kd~  120 (142)
T TIGR03042        46 EAAKDRLPELASLVAKED--WVFTRNLIHG---PMGEVRREMTYLNQSLLPKDQKEALALAKELKDDLEKLDEAARLQDG  120 (142)
T ss_pred             HHHHHhhHHHHHHHhhcc--hHHHHHHHhc---cHHHHHHHHHHHHHccCHHhHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence            456778899999999998  9999988874   4443332                     2233333445556666555


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045628          111 EGCMKTFQLLKRDYATLRRKLEAYFQQ  137 (142)
Q Consensus       111 ~~~~~~~~~l~~~~~~~~~~L~~~l~~  137 (142)
                      ..+.       ..|.++...++.|++.
T Consensus       121 ~~a~-------k~Y~~av~~~dafl~~  140 (142)
T TIGR03042       121 PQAQ-------KAYQKAAADFDAYLDL  140 (142)
T ss_pred             HHHH-------HHHHHHHHHHHHHHhh
Confidence            4444       4566666777777653

This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.

>TIGR00984 3a0801s03tim44 mitochondrial import inner membrane, translocase subunit

Probab=82.08  E-value=5.7  Score=33.52  Aligned_cols=87  Identities=15%  Similarity=0.263  Sum_probs=64.8

Q ss_pred             hHHHHHHHHHHHHhcccccCChHHHHHHHHhhcccCChHHHHHHHHHHHHhHHHH-HHHHHHHHhcCCCCHHHHHHHhhh
Q 045628            3 RNQQLRRQLASMRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARL-ITTIERALEKSPLDFNKLDGYMHQ   81 (142)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~g~lD~~~~~L~~L~~~~~~~~l~ell~~Fl~d~~~~-l~~L~~al~~~d~D~~~~~~~aH~   81 (142)
                      +.+.++.++.+++..+|...=+-.++.++..+    ||.|-   +..|+..+... ++.+-.|+..||  .+.++.+++.
T Consensus       206 ~~r~itdkv~~~~~~lF~ete~a~~l~eIk~~----DPsFd---~~~Fl~gar~aI~p~ILeAf~kGD--~e~LK~~lse  276 (378)
T TIGR00984       206 MMRGVTDKIGGVFSGMFSETEVSEVLTEFKKI----DPTFD---KEHFLRFLREYIVPEILEAYVKGD--LEVLKSWCSE  276 (378)
T ss_pred             HhHHhhhhhhhhhhcccCCCHHHHHHHHHHHh----CCCCC---HHHHHHHHHHHHHHHHHHHHHcCC--HHHHHHhhCH
Confidence            34567778888888888877666667776665    67774   67889999999 799999999998  8888877654


Q ss_pred             hcccccccChHHHHHHHHHHHHHHHcC
Q 045628           82 FKGSSTSIGAKKVKAESTQFREYCEAG  108 (142)
Q Consensus        82 LKGss~~iGa~~L~~~c~~lE~~~~~~  108 (142)
                                ......|..+++....|
T Consensus       277 ----------~vy~~f~a~I~qr~~~G  293 (378)
T TIGR00984       277 ----------APFSVYATVVKEYKKMG  293 (378)
T ss_pred             ----------HHHHHHHHHHHHHHHCC
Confidence                      24455566677666655

translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tim proteins.

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=80.06  E-value=11  Score=27.62  Aligned_cols=66  Identities=12%  Similarity=0.146  Sum_probs=40.2

Q ss_pred             HHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045628           59 TTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYATLRRKLEAYF  135 (142)
Q Consensus        59 ~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l  135 (142)
                      +.+..+-..+|  ...+..+.+.++        ..+..+...++.+...++++.+...+..++= |..+...++.+.
T Consensus        88 E~lee~~~~~d--~~~L~~l~~~~~--------~~~~~~~~~l~~~~~~~d~~~A~~~~~kLky-~~kl~~~i~~~~  153 (157)
T TIGR00714        88 EELDEIEQAKD--EARLESFIKRVK--------KMFQTRHQLLVEQLDNQTWAAAADYTRKLRF-LDKLRSSAEQLE  153 (157)
T ss_pred             HHHHHHHhCCC--HHHHHHHHHHHH--------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            33333334444  666666666665        3456666777777777788777777666653 566666665543

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	142
1yvi_A	149	X-Ray Structure Of Putative Histidine-Containing Ph		1e-27
1wn0_A	145	Crystal Structure Of Histidine-containing Phosphotr		1e-25
3us6_A	153	Crystal Structure Of Histidine-Containing Phosphotr		1e-24
4euk_B	159	Crystal Structure Length = 159		5e-24

>pdb|1YVI|A Chain A, X-Ray Structure Of Putative Histidine-Containing Phosphotransfer Protein From Rice, Ak104879 Length = 149

Iteration: 1
 Score =  118 bits (295), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/131 (43%), Positives = 84/131 (64%), Gaps = 1/131 (0%)
Query: 7   LRRQLASMRQSLFDQGHLDEQFILLEELQDDA-NPNFVEEVVTLHYRDSARLITTIERAL 65
           LR QL ++  S+F QG +DEQF  L+ LQD+   P FV EVVTL   D+ R+I  I   L
Sbjct: 6   LRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLL 65
Query: 66  EKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYA 125
           E+  ++F+K+D Y+HQ KGSS S+GA+KVK    QFR++C+  + +GC+    +++ D+ 
Sbjct: 66  EQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFY 125
Query: 126 TLRRKLEAYFQ 136
            LR K +   Q
Sbjct: 126 DLRNKFQTMLQ 136

>pdb|1WN0|A Chain A, Crystal Structure Of Histidine-containing Phosphotransfer Protein, Zmhp2, From Maize Length = 145

Iteration: 1
 Score =  111 bits (278), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/127 (42%), Positives = 82/127 (64%), Gaps = 1/127 (0%)
Query: 7   LRRQLASMRQSLFDQGHLDEQFILLEELQDDA-NPNFVEEVVTLHYRDSARLITTIERAL 65
           LR QL ++  S+F  G +DEQF  L+ LQ+D   P FV EVVTL   D+ R+I+ +   L
Sbjct: 6   LREQLNALLSSMFASGLVDEQFQQLQMLQEDGGTPGFVAEVVTLFCDDADRIISELAALL 65
Query: 66  EKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYA 125
           ++  +DF+K+D Y+HQ KGSS S+GA+KVK    QFR+ C+  N +GC+    +++ ++ 
Sbjct: 66  DQPIVDFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQLCQDKNRDGCIMALAVVRNEFY 125
Query: 126 TLRRKLE 132
            LR K +
Sbjct: 126 DLRNKFQ 132

>pdb|3US6|A Chain A, Crystal Structure Of Histidine-Containing Phosphotransfer Protein Mthpt1 From Medicago Truncatula Length = 153

Iteration: 1
 Score =  108 bits (270), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/128 (43%), Positives = 86/128 (67%)
Query: 6   QLRRQLASMRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERAL 65
           Q+RRQ     +S+F +G LD QF+ L++LQD+ NP FV EVV+L + DS R++  +  A+
Sbjct: 5   QMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAV 64
Query: 66  EKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYA 125
           ++  +DF K+D ++HQFKGSS SIGA++VK     FR +CE  N + C +  Q +K++Y 
Sbjct: 65  DQQSIDFKKVDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVKQEYL 124
Query: 126 TLRRKLEA 133
            ++ KLE 
Sbjct: 125 LVKNKLET 132

>pdb|4EUK|B Chain B, Crystal Structure Length = 159

Iteration: 1
 Score =  106 bits (264), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 55/131 (41%), Positives = 90/131 (68%)
Query: 6   QLRRQLASMRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERAL 65
           Q ++ L    +SLF +G LD QF+ L++LQD++NP+FV +VVTL ++DS R++  +  +L
Sbjct: 10  QKQKSLQDYTKSLFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILNDLSLSL 69
Query: 66  EKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYA 125
           ++  +DF K+D ++HQ KGSS+SIGA++VK     FR +CE  N E C +  Q +K++Y 
Sbjct: 70  DQQVVDFKKVDPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEACHRCLQQVKQEYY 129
Query: 126 TLRRKLEAYFQ 136
            ++ +LE  F+
Sbjct: 130 LVKNRLETLFK 140

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	142
1yvi_A	149	Histidine-containing phosphotransfer protein; stru	3e-45
3us6_A	153	Histidine-containing phosphotransfer protein type	5e-42
2r25_A	167	Phosphorelay intermediate protein YPD1; alpha5-BET	2e-17
1y6d_A	120	Phosphorelay protein LUXU; phosphotransferase, fou	3e-08
2a0b_A	125	HPT domain; sensory transduction, histidine kinase	8e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A Length = 149

 Score =  143 bits (363), Expect = 3e-45
 Identities = 57/132 (43%), Positives = 84/132 (63%), Gaps = 1/132 (0%)

Query: 6   QLRRQLASMRQSLFDQGHLDEQFILLEELQDDA-NPNFVEEVVTLHYRDSARLITTIERA 64
            LR QL ++  S+F QG +DEQF  L+ LQD+   P FV EVVTL   D+ R+I  I   
Sbjct: 5   ALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATL 64

Query: 65  LEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDY 124
           LE+  ++F+K+D Y+HQ KGSS S+GA+KVK    QFR++C+  + +GC+    +++ D+
Sbjct: 65  LEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDF 124

Query: 125 ATLRRKLEAYFQ 136
             LR K +   Q
Sbjct: 125 YDLRNKFQTMLQ 136

>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula} Length = 153

 Score =  135 bits (341), Expect = 5e-42
 Identities = 56/131 (42%), Positives = 87/131 (66%)

Query: 6   QLRRQLASMRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERAL 65
           Q+RRQ     +S+F +G LD QF+ L++LQD+ NP FV EVV+L + DS R++  +  A+
Sbjct: 5   QMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAV 64

Query: 66  EKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYA 125
           ++  +DF K+D ++HQFKGSS SIGA++VK     FR +CE  N + C +  Q +K++Y 
Sbjct: 65  DQQSIDFKKVDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVKQEYL 124

Query: 126 TLRRKLEAYFQ 136
            ++ KLE   +
Sbjct: 125 LVKNKLETLLR 135

>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A Length = 167

 Score = 73.3 bits (179), Expect = 2e-17
 Identities = 16/117 (13%), Positives = 42/117 (35%), Gaps = 3/117 (2%)

Query: 17  SLFDQGHLD-EQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKL 75
           S      ++      +  + DD + +F + ++      +      ++R L+    +  +L
Sbjct: 2   STIPSEIINWTILNEIISMDDD-DSDFSKGLIIQFIDQAQTTFAQMQRQLD-GEKNLTEL 59

Query: 76  DGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYATLRRKLE 132
           D   H  KGSS ++G +++     + +            KT  +      ++   + 
Sbjct: 60  DNLGHFLKGSSAALGLQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGIN 116

>1y6d_A Phosphorelay protein LUXU; phosphotransferase, four-helix bundle, quorum sensing; NMR {Vibrio harveyi} SCOP: a.24.10.5 Length = 120

 Score = 47.9 bits (114), Expect = 3e-08
 Identities = 17/116 (14%), Positives = 38/116 (32%), Gaps = 4/116 (3%)

Query: 20  DQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYM 79
           +   L++Q   +EEL  +   + V  ++ +   +    I T+             L    
Sbjct: 8   NTDVLNQQ--KIEELSAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGSE--QLLYLKEIS 63

Query: 80  HQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYATLRRKLEAYF 135
           H  K S+ S GA ++   +    +  +A   +        +       R    ++ 
Sbjct: 64  HALKSSAASFGADRLCERAIAIDKKAKANQLQEQGMETSEMLALLHITRDAYRSWT 119

>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A Length = 125

 Score = 41.5 bits (97), Expect = 8e-06
 Identities = 18/126 (14%), Positives = 51/126 (40%), Gaps = 4/126 (3%)

Query: 13  SMRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDF 72
           +  ++   +  LD    +LE+  +   P  + + + +  +     ++ +E  L     D 
Sbjct: 1   TTEENSKSEALLDIP--MLEQYLELVGPKLITDGLAVFEKMMPGYVSVLESNLTAQ--DK 56

Query: 73  NKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYATLRRKLE 132
             +    H+ KG++ S+G + ++    Q +        +   +  + +K ++      L+
Sbjct: 57  KGIVEEGHKIKGAAGSVGLRHLQQLGQQIQSPDLPAWEDNVGEWIEEMKEEWRHDVEVLK 116

Query: 133 AYFQQA 138
           A+  +A
Sbjct: 117 AWVAKA 122

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 1e-05
 Identities = 20/124 (16%), Positives = 40/124 (32%), Gaps = 30/124 (24%)

Query: 14  MRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLIT--TIERALEKSPLD 71
            + SL ++    E  I +  +  +     +E    LH      ++    I +  +   L 
Sbjct: 412 HKYSLVEK-QPKESTISIPSIYLELKVK-LENEYALH----RSIVDHYNIPKTFDSDDLI 465

Query: 72  FNKLDGYMHQFKGSSTSIGAKKVKAESTQFREY--CEAGNGEGCMKTFQLLKRDYATLRR 129
              LD Y +        IG             +      + E  M  F+++  D+  L +
Sbjct: 466 PPYLDQYFYSH------IG-------------HHLKNIEHPER-MTLFRMVFLDFRFLEQ 505

Query: 130 KLEA 133
           K+  
Sbjct: 506 KIRH 509

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	142
3us6_A	153	Histidine-containing phosphotransfer protein type	100.0
1yvi_A	149	Histidine-containing phosphotransfer protein; stru	100.0
2r25_A	167	Phosphorelay intermediate protein YPD1; alpha5-BET	99.94
2a0b_A	125	HPT domain; sensory transduction, histidine kinase	99.87
3myf_A	119	Sensor protein; HPT, histidine kinase, PSI, MCSG,	99.83
3iqt_A	123	Signal transduction histidine-protein kinase BARA;	99.81
1y6d_A	120	Phosphorelay protein LUXU; phosphotransferase, fou	99.75
2ooc_A	113	Histidine phosphotransferase; NP_419930.1, hypothe	99.74
1sr2_A	116	Putative sensor-like histidine kinase YOJN; four-h	99.69
1tqg_A	105	Chemotaxis protein CHEA; histidine kinase, phospho	99.58
2ld6_A	139	Chemotaxis protein CHEA; TMP1, transferase; NMR {T	99.44
1i5n_A	146	Chemotaxis protein CHEA; four-helix bundle, transf	99.41
2lch_A	113	Protein OR38; structural genomics, northeast struc	99.39
3kyj_A	144	CHEA3, putative histidine protein kinase; protein-	99.07
2lp4_A	225	Chemotaxis protein CHEA; two component signaling s	98.78
3ls0_A	133	SLL1638 protein, PSBQ; photosynthesis, four helix	89.35
3zsu_A	130	TLL2057 protein, cyanoq; photosystem II assembly,	87.61
1vyk_A	149	Oxygen-evolving enhancer protein 3; photosystem II	86.72

>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}

Probab=100.00  E-value=6.5e-34  Score=208.65  Aligned_cols=138  Identities=42%  Similarity=0.742  Sum_probs=130.8

Q ss_pred             ChhHHHHHHHHHHHHhcccccCChHHHHHHHHhhcccCChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhh
Q 045628            1 MERNQQLRRQLASMRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMH   80 (142)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~g~lD~~~~~L~~L~~~~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH   80 (142)
                      |+++ +|+.++..|+++++++|+||++|++|..|.++++|+|+.++|..|++++++.+..|+.+++.+++|++.+.++||
T Consensus         1 ~~~~-~~~~~~~~~~~~l~~~g~LD~~f~qL~~L~~~~~~~~~~ell~~Fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH   79 (153)
T 3us6_A            1 MEVG-QMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAVDQQSIDFKKVDAHVH   79 (153)
T ss_dssp             -CHH-HHHHHHHHHHHHHHHTTSCCHHHHHHHHTCBTTBTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred             CcHH-HHHHHHHHHHHhcccccchHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Confidence            4444 589999999999999999999999999999989999999999999999999999999999998445999999999


Q ss_pred             hhcccccccChHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 045628           81 QFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYATLRRKLEAYFQQAL  139 (142)
Q Consensus        81 ~LKGss~~iGa~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~~  139 (142)
                      +|||||+|+||.+|+.+|..||.+|+.++.+++...+.+++.+|.+++.+|++|++.++
T Consensus        80 ~LKGss~~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~v~~~L~~~~~le~  138 (153)
T 3us6_A           80 QFKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVKQEYLLVKNKLETLLRLEQ  138 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999765

>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A

Probab=100.00  E-value=4.4e-32  Score=197.78  Aligned_cols=136  Identities=42%  Similarity=0.747  Sum_probs=127.6

Q ss_pred             HHHHHHHHHHHHhcccccCChHHHHHHHHhhcccCC-hHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhh
Q 045628            4 NQQLRRQLASMRQSLFDQGHLDEQFILLEELQDDAN-PNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQF   82 (142)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~g~lD~~~~~L~~L~~~~~-~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~L   82 (142)
                      ..+|+++++.|++++++.|+||+.|++|..|+++++ |+|+.+||..|++++++.+..|..|++.+++|+..+..++|+|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~lD~~~~~L~~L~~~~~~~~~~~elv~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~L   82 (149)
T 1yvi_A            3 AAALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQL   82 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHC---CTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccccccHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHH
Confidence            358999999999999999999999999999987778 9999999999999999999999999998855699999999999


Q ss_pred             cccccccChHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 045628           83 KGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYATLRRKLEAYFQQAL  139 (142)
Q Consensus        83 KGss~~iGa~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~~  139 (142)
                      ||||+||||.+|+.+|..||.+++.++.+.+...+.+++.+|.+++.+|++|++.++
T Consensus        83 KGssa~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~~~~~L~~~~~~e~  139 (149)
T 1yvi_A           83 KGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFYDLRNKFQTMLQLEQ  139 (149)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998764

>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A

Probab=99.94  E-value=3e-26  Score=169.55  Aligned_cols=119  Identities=15%  Similarity=0.265  Sum_probs=110.7

Q ss_pred             cccccCChHH-HHHHHHhhcccCChHHHHHHHHHHHHhHHHHHHHHHHHHh-cCCCCHHHHHHHhhhhcccccccChHHH
Q 045628           17 SLFDQGHLDE-QFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALE-KSPLDFNKLDGYMHQFKGSSTSIGAKKV   94 (142)
Q Consensus        17 ~~~~~g~lD~-~~~~L~~L~~~~~~~~l~ell~~Fl~d~~~~l~~L~~al~-~~d~D~~~~~~~aH~LKGss~~iGa~~L   94 (142)
                      ++.+.|+||. +|.+|+.|++++ |+|+.+||..|++++++.+..|+.|++ .+|  +..+..++|+|||||+||||.+|
T Consensus         2 ~~~~~~~LD~~~f~qL~el~dd~-p~Fv~elV~~F~edse~~l~~L~~AL~~~~D--~~~L~~~aH~LKGSSAnLGA~rV   78 (167)
T 2r25_A            2 STIPSEIINWTILNEIISMDDDD-SDFSKGLIIQFIDQAQTTFAQMQRQLDGEKN--LTELDNLGHFLKGSSAALGLQRI   78 (167)
T ss_dssp             CCCCSCSSCHHHHHHHHHTTTTS-SHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCCCcCCcCHHHHHHHHHhcccC-chHHHHHHHHHHHhHHHHHHHHHHHHhcccC--HHHHHHHHHhhhhhHHHHHHHHH
Confidence            4567899998 899999998866 999999999999999999999999999 776  99999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCC------------hh--------------------------------hHHHHHHHHHHHHHHHHHH
Q 045628           95 KAESTQFREYCEAGN------------GE--------------------------------GCMKTFQLLKRDYATLRRK  130 (142)
Q Consensus        95 ~~~c~~lE~~~~~~~------------~~--------------------------------~~~~~~~~l~~~~~~~~~~  130 (142)
                      +.+|.+||.+|+.++            .+                                .+...+.+++.+|..++.+
T Consensus        79 ~~~C~~le~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~L~~~k~e~~~~~~~  158 (167)
T 2r25_A           79 AWVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGINIDEDDEEIKIQVDDKDENSIYLILIAKALNQSRLEFKLARIE  158 (167)
T ss_dssp             HHHHHHHHHHHTTCCCCCCCHHHHHTTCSSGGGGSSSCTTTTCCCCCCCSSSCCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCccccccccccccccccccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999            44                                6889999999999999999


Q ss_pred             HHHHHHHh
Q 045628          131 LEAYFQQA  138 (142)
Q Consensus       131 L~~~l~~~  138 (142)
                      |++|++.+
T Consensus       159 L~~~~~~~  166 (167)
T 2r25_A          159 LSKYYNTN  166 (167)
T ss_dssp             HHHHTTSC
T ss_pred             HHHHHccc
Confidence            99998643

>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A

Probab=99.87  E-value=3.7e-22  Score=140.69  Aligned_cols=117  Identities=15%  Similarity=0.176  Sum_probs=106.7

Q ss_pred             ccccCChHH-HHHHHHhhcccCChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHH
Q 045628           18 LFDQGHLDE-QFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKA   96 (142)
Q Consensus        18 ~~~~g~lD~-~~~~L~~L~~~~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~   96 (142)
                      +.+.++||. ++.+|..+   .+++++.+++..|++++++.+..|..++..+|  +..+.+.||+|||||+++|+.+|+.
T Consensus         6 ~~~~~~lD~~~l~~l~~~---~g~~~~~~ll~~F~~e~~~~l~~L~~a~~~~d--~~~~~~~aH~LKGsa~~lG~~~l~~   80 (125)
T 2a0b_A            6 SKSEALLDIPMLEQYLEL---VGPKLITDGLAVFEKMMPGYVSVLESNLTAQD--KKGIVEEGHKIKGAAGSVGLRHLQQ   80 (125)
T ss_dssp             CHHHHHSCHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ccccccCCHHHHHHHHHH---hCHHHHHHHHHHHHHHhHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            445577888 47776665   57899999999999999999999999999998  9999999999999999999999999


Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 045628           97 ESTQFREYCEAGNGEGCMKTFQLLKRDYATLRRKLEAYFQQAL  139 (142)
Q Consensus        97 ~c~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~~  139 (142)
                      +|..+|..++.++.+.+...+..+...|.++...|+.|+....
T Consensus        81 ~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~~  123 (125)
T 2a0b_A           81 LGQQIQSPDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVAKAT  123 (125)
T ss_dssp             HHHHHTCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999999987643

>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}

Probab=99.83  E-value=1.2e-19  Score=127.56  Aligned_cols=114  Identities=14%  Similarity=0.181  Sum_probs=100.9

Q ss_pred             cccCChHHHHHHHHhhcccCChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHH
Q 045628           19 FDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAES   98 (142)
Q Consensus        19 ~~~g~lD~~~~~L~~L~~~~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c   98 (142)
                      |+-.++|..  .+.++- +|++++..+|+.+|+++.|+.+..|+.+++.+|  ++.+..++|+|||+|+++|+.+|..+|
T Consensus         1 ~~~~~~D~~--~~l~~~-~g~~~L~~~lL~~fl~~~~~~~~~l~~a~~~~d--~~~l~~~aHkLkGaa~~~Ga~~L~~~~   75 (119)
T 3myf_A            1 FDLHTLNWD--LCLTQA-NHKSNLALEMLKMLLDSLPETVEKIQTALGQND--QATMLSTIHKLHGASCYCGVPTTQRLC   75 (119)
T ss_dssp             -CTTTCCHH--HHHHHT-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred             CCccccCHH--HHHHHh-CCCHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            344566663  223333 489999999999999999999999999999998  999999999999999999999999999


Q ss_pred             HHHHHHHHcCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045628           99 TQFREYCEAGNG-EGCMKTFQLLKRDYATLRRKLEAYFQQ  137 (142)
Q Consensus        99 ~~lE~~~~~~~~-~~~~~~~~~l~~~~~~~~~~L~~~l~~  137 (142)
                      ..||.+++.+.. +.+.+.+..+..++..+..+++.|+..
T Consensus        76 ~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~~~l~~  115 (119)
T 3myf_A           76 QEIESALKRQTPVEDLEPEILELLDELTKVESAVKQVLSQ  115 (119)
T ss_dssp             HHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999864 688899999999999999999999985

>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}

Probab=99.81  E-value=2.9e-19  Score=126.39  Aligned_cols=110  Identities=15%  Similarity=0.181  Sum_probs=98.1

Q ss_pred             cCChHHHHHHHHhhcccCChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHHH
Q 045628           21 QGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQ  100 (142)
Q Consensus        21 ~g~lD~~~~~L~~L~~~~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~  100 (142)
                      .+++|..  .+..+- +|++++..+|+.+|+++.++++..|+.++..+|  ++.+..++|+|||||+++|+.+|..+|..
T Consensus        12 ~~~~D~~--~~l~~a-~g~~~La~elL~~fl~~~~~~~~~l~~a~~~~d--~~~l~~~aHkLkGaa~~~Ga~~L~~~c~~   86 (123)
T 3iqt_A           12 NATLDWQ--LALRQA-AGKTDLARDMLQMLLDFLPEVRNKVEEQLVGEN--PEGLVDLIHKLHGSCGYSGVPRMKNLCQL   86 (123)
T ss_dssp             GGTCCHH--HHHHHT-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--CTTHHHHHHHHHHHHTTSCCHHHHHHHHH
T ss_pred             CCccCHH--HHHHHh-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            3556663  333433 489999999999999999999999999999998  99999999999999999999999999999


Q ss_pred             HHHHHHcCChh-hHHHHHHHHHHHHHHHHHHHHHHH
Q 045628          101 FREYCEAGNGE-GCMKTFQLLKRDYATLRRKLEAYF  135 (142)
Q Consensus       101 lE~~~~~~~~~-~~~~~~~~l~~~~~~~~~~L~~~l  135 (142)
                      ||.++++++.. .+.+.+..+..++..+..+.+.|+
T Consensus        87 LE~~~r~g~~~~~l~~~l~~L~del~~v~~~~~~~~  122 (123)
T 3iqt_A           87 IEQQLRSGTKEEDLEPELLELLDEMDNVAREASKIL  122 (123)
T ss_dssp             HHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999998664 888999999999999999998886

>1y6d_A Phosphorelay protein LUXU; phosphotransferase, four-helix bundle, quorum sensing; NMR {Vibrio harveyi} SCOP: a.24.10.5

Probab=99.75  E-value=4.1e-20  Score=130.09  Aligned_cols=105  Identities=14%  Similarity=0.137  Sum_probs=86.0

Q ss_pred             HHHHHhhcccCChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHHHHHHHHHc
Q 045628           28 FILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEA  107 (142)
Q Consensus        28 ~~~L~~L~~~~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~  107 (142)
                      |.+|..|++..+|+++.+++..|++++++.|..|..+...++  ...+.+.+|+|||||+++|+.+|+.+|..+|..+|+
T Consensus        14 ~~~l~~L~~~~g~~~~~e~~~~F~~e~~e~l~~L~~a~~~~~--~~~i~r~aH~LKGsAa~~Ga~~l~~~~~~lE~~~r~   91 (120)
T 1y6d_A           14 QQKIEELSAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGSEQ--LLYLKEISHALKSSAASFGADRLCERAIAIDKKAKA   91 (120)
T ss_dssp             TTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSHHH--HHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHcccccch--HHHHHHHHHHHhhhHHHhCHHHHHHHHHHHHHHHhC
Confidence            445666666568999999999999999999999999887776  888999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHH
Q 045628          108 GNGEGCMKTFQLLKRDYATLRRKLEAY  134 (142)
Q Consensus       108 ~~~~~~~~~~~~l~~~~~~~~~~L~~~  134 (142)
                      |+...+......+...+.++...++.+
T Consensus        92 g~~~~~~~~~~~l~~~l~~~~d~l~~~  118 (120)
T 1y6d_A           92 NQLQEQGMETSEMLALLHITRDAYRSW  118 (120)
T ss_dssp             HHHCTTTSTTTTTTHHHHHHHHHHHHH
T ss_pred             CChhhhHhhHHHHHHHHHHHHHHHHHH
Confidence            877744444455555555555555544

>2ooc_A Histidine phosphotransferase; NP_419930.1, hypothetical protein, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PG4; 1.52A {Caulobacter crescentus} SCOP: a.24.10.6

Probab=99.74  E-value=2.3e-18  Score=119.93  Aligned_cols=105  Identities=17%  Similarity=0.214  Sum_probs=88.3

Q ss_pred             CChHHHHHHHHhhcccCChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHHHH
Q 045628           22 GHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQF  101 (142)
Q Consensus        22 g~lD~~~~~L~~L~~~~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~l  101 (142)
                      +.+|..  .|..+. .||++|+.+|+..|++++++.+..|..+  ..+  |   .++||+|||||++|||.+|..+|..+
T Consensus         9 ~~iD~~--~L~~~~-~gd~~~~~elL~~F~~~~~~~l~~L~~a--~~~--~---~~~aH~LKGsA~~iGA~~l~~~c~~l   78 (113)
T 2ooc_A            9 GAVDFA--YLEGFA-AGDFAVVDEVLALFREQAALWAPMLDPT--HPG--W---KDAVHTVKGAARGVGAFNLGEVCERC   78 (113)
T ss_dssp             CCSCHH--HHHHHT-TTCHHHHHHHHHHHHHHHHHHGGGCSTT--STT--H---HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCcCHH--HHHhHh-CCCHHHHHHHHHHHHHHhHHHHHHHHHh--hHH--H---HHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            445652  333333 4899999999999999999999999988  333  5   89999999999999999999999999


Q ss_pred             HHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 045628          102 REYCEAGNGEGCMKTFQLLKRDYATLRRKLEAYFQQALPG  141 (142)
Q Consensus       102 E~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~~~~  141 (142)
                      |..++.     ....+..|+..+.++..+|...++...+|
T Consensus        79 E~~~~~-----~~~~~~~L~~a~~~~~~~l~~~~~~~~~~  113 (113)
T 2ooc_A           79 EAGQES-----LEGVRTALDAALLDIAAYAHEQALRSLKG  113 (113)
T ss_dssp             HTTSSC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHhhh-----hHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            998877     56678899999999999999999877766

>1sr2_A Putative sensor-like histidine kinase YOJN; four-helical bundle, transferase; NMR {Escherichia coli} SCOP: a.24.10.4

Probab=99.69  E-value=5.3e-17  Score=113.66  Aligned_cols=87  Identities=13%  Similarity=0.073  Sum_probs=80.2

Q ss_pred             ChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHHHHHHHHHcCChhhHHHHHH
Q 045628           39 NPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQ  118 (142)
Q Consensus        39 ~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~~~~~~~~~~~~  118 (142)
                      .+..-.+++..|+++.++++..|..+++.+|  +..++.++|+|||+++++|+..|+.+|..+|.+++.++...+...+.
T Consensus        29 k~~~~~d~l~~fl~s~~~Dl~~L~~A~~~~D--~~~l~~~aHrLKGaa~~lG~~~L~~lc~~LE~~~~~~~~~~l~~~i~  106 (116)
T 1sr2_A           29 AQLHASGYYALFVDTVPDDVKRLYTEAATSD--FAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDVPGIEKYIS  106 (116)
T ss_dssp             HHHHHHTTHHHHTTTHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             chhchHHHHHHHHHHhHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3466788999999999999999999999998  99999999999999999999999999999999999999988888888


Q ss_pred             HHHHHHHHH
Q 045628          119 LLKRDYATL  127 (142)
Q Consensus       119 ~l~~~~~~~  127 (142)
                      .|...+.++
T Consensus       107 ~L~~~l~~L  115 (116)
T 1sr2_A          107 DIDSYVKSL  115 (116)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            888777654

>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3

Probab=99.58  E-value=8.7e-15  Score=99.82  Aligned_cols=89  Identities=9%  Similarity=0.119  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHh--------cCCCCHHHHHHHhhhhcccccccChHHHHHHHHHHHHHH---HcCChh
Q 045628           43 VEEVVTLHYRDSARLITTIERALE--------KSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYC---EAGNGE  111 (142)
Q Consensus        43 l~ell~~Fl~d~~~~l~~L~~al~--------~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~---~~~~~~  111 (142)
                      +.+++..|++++++.+..|..++.        ..+  +..+.+.+|+|||||+++|+..+..+|..+|...   +.++..
T Consensus         3 ~~~l~~~F~~e~~e~l~~l~~~l~~le~~~~~~~~--~~~l~r~~HtLKGsa~~~G~~~l~~la~~lE~~l~~~r~~~~~   80 (105)
T 1tqg_A            3 HMEYLGVFVDETKEYLQNLNDTLLELEKNPEDMEL--INEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIK   80 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHH--HHHHHHHHHhhhHHHHhcChHHHHHHHHHHHHHHHHHHhCCCC
Confidence            578999999999999999999996        333  7899999999999999999999999999999876   777777


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Q 045628          112 GCMKTFQLLKRDYATLRRKLEA  133 (142)
Q Consensus       112 ~~~~~~~~l~~~~~~~~~~L~~  133 (142)
                      .....+..+...+..+...+..
T Consensus        81 ~~~~~~~~l~~~~d~l~~~l~~  102 (105)
T 1tqg_A           81 ITSDLLDKIFAGVDMITRMVDK  102 (105)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH
Confidence            7777888888888777776654

>2ld6_A Chemotaxis protein CHEA; TMP1, transferase; NMR {Thermotoga maritima}

Probab=99.44  E-value=1.3e-13  Score=98.81  Aligned_cols=90  Identities=10%  Similarity=0.137  Sum_probs=74.1

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHh--------cCCCCHHHHHHHhhhhcccccccChHHHHHHHHHHHHHH---HcCChhh
Q 045628           44 EEVVTLHYRDSARLITTIERALE--------KSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYC---EAGNGEG  112 (142)
Q Consensus        44 ~ell~~Fl~d~~~~l~~L~~al~--------~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~---~~~~~~~  112 (142)
                      .+++..|++++++.+..|..++.        ..  ++..+.+.+|+|||||+++|+..++.+|..+|...   |.+....
T Consensus         3 ~ell~~Fl~Ea~e~L~~l~~~l~~le~~~~d~~--~~~~l~R~aHTLKGsA~~~G~~~l~~lah~lE~~l~~lr~g~~~~   80 (139)
T 2ld6_A            3 EEYLGVFVDETKEYLQNLNDTLLELEKNPEDME--LINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKI   80 (139)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSS--HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHhHHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            57999999999999999999994        23  38999999999999999999999999999999865   6776655


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 045628          113 CMKTFQLLKRDYATLRRKLEAYF  135 (142)
Q Consensus       113 ~~~~~~~l~~~~~~~~~~L~~~l  135 (142)
                      ....+..+...+..+...+...-
T Consensus        81 ~~~l~~~l~~~~D~l~~~l~~~~  103 (139)
T 2ld6_A           81 TSDLLDKIFAGVDMITRMVDKIV  103 (139)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666666667766666665543

>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3

Probab=99.41  E-value=4.2e-13  Score=96.94  Aligned_cols=91  Identities=14%  Similarity=0.270  Sum_probs=72.1

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHhcC-----C-CCHHHHHHHhhhhcccccccChHHHHHHHHHHHHH---HHcCChhhHH
Q 045628           44 EEVVTLHYRDSARLITTIERALEKS-----P-LDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREY---CEAGNGEGCM  114 (142)
Q Consensus        44 ~ell~~Fl~d~~~~l~~L~~al~~~-----d-~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~---~~~~~~~~~~  114 (142)
                      .+++..|++++++.+..|..++..-     | -++..+.+.+|+|||||+++|+..++.+|..+|..   .|.+......
T Consensus         6 ~ell~~Fl~Ea~e~L~~le~~L~~le~~~~d~~~l~~lfR~aHTLKGsA~~~G~~~l~~lah~lE~~l~~~r~g~~~~~~   85 (146)
T 1i5n_A            6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNT   85 (146)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhHhHHccCHHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence            4789999999999999999999321     1 02689999999999999999999999999999987   7777766555


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 045628          115 KTFQLLKRDYATLRRKLEAY  134 (142)
Q Consensus       115 ~~~~~l~~~~~~~~~~L~~~  134 (142)
                      ..+..+...+..+...+..+
T Consensus        86 ~l~~~l~~~~D~l~~~l~~~  105 (146)
T 1i5n_A           86 DIINLFLETKDIMQEQLDAY  105 (146)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            56666666666555555443

>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}

Probab=99.39  E-value=8.2e-13  Score=91.27  Aligned_cols=89  Identities=13%  Similarity=0.176  Sum_probs=71.5

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHhc-----CC-CCHHHHHHHhhhhcccccccChHHHHHHHHHHHH---HHHcCChhhHH
Q 045628           44 EEVVTLHYRDSARLITTIERALEK-----SP-LDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFRE---YCEAGNGEGCM  114 (142)
Q Consensus        44 ~ell~~Fl~d~~~~l~~L~~al~~-----~d-~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~---~~~~~~~~~~~  114 (142)
                      .+++..|++++++.+..|..++..     .| -+...+.+.+|+|||||+++|+..++.+|..+|.   ..+.+......
T Consensus         5 ~el~~~F~~Ea~e~l~~l~~~l~~le~~~~d~~~~~~l~R~~HTlKGsa~~~G~~~l~~lah~~E~~l~~~r~~~~~~~~   84 (113)
T 2lch_A            5 QEYIKKVTDELKELIQNVNDDIKEVEKNPEDMEYWNKIYRLVHTMKEITETMGFSSVAKVLHTIMNLVDKMLNSEIKITS   84 (113)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSTTTCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence            589999999999999999999842     11 0256799999999999999999999999999996   55677666666


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 045628          115 KTFQLLKRDYATLRRKLE  132 (142)
Q Consensus       115 ~~~~~l~~~~~~~~~~L~  132 (142)
                      ..+..+...+..+...+.
T Consensus        85 ~l~~~l~~~~d~l~~~l~  102 (113)
T 2lch_A           85 DLIDKVKKKLDMVTRELD  102 (113)
T ss_dssp             HHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            677777777766655544

>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A

Probab=99.07  E-value=6.3e-10  Score=80.21  Aligned_cols=92  Identities=22%  Similarity=0.224  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHhc---CCCC---HHHHHHHhhhhcccccccChHHHHHHHHHHHHHH---HcCChhhH
Q 045628           43 VEEVVTLHYRDSARLITTIERALEK---SPLD---FNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYC---EAGNGEGC  113 (142)
Q Consensus        43 l~ell~~Fl~d~~~~l~~L~~al~~---~d~D---~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~---~~~~~~~~  113 (142)
                      ..+++..|++++++.+..|...+..   +..|   ...+.+.+|+|||+|+++|+..+..+|..+|...   +.+...--
T Consensus         9 ~~ell~~FleEa~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~HTLKGsA~~~G~~~i~~laH~lE~ll~~lr~g~~~~~   88 (144)
T 3kyj_A            9 MDEIWALYADDGAQALDAMEASLLALQAGEDAAAHVGPLFRAVHTFKGNSRVLGLSVVESRAHLCEDLIGLVRDAGVPMD   88 (144)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhHhhHHHhcCchHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            4689999999999999999998842   2112   4679999999999999999999999999999754   56655444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 045628          114 MKTFQLLKRDYATLRRKLEAY  134 (142)
Q Consensus       114 ~~~~~~l~~~~~~~~~~L~~~  134 (142)
                      ...+..+...+..+...+..+
T Consensus        89 ~~l~dlll~~~D~l~~lv~~~  109 (144)
T 3kyj_A           89 GEIVEILLFASDTLRAMLEET  109 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            555566666665555555444

>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}

Probab=98.78  E-value=2.8e-08  Score=76.08  Aligned_cols=88  Identities=14%  Similarity=0.252  Sum_probs=65.0

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHhc---CCCC---HHHHHHHhhhhcccccccChHHHHHHHHHHHHHH---HcCChhhHH
Q 045628           44 EEVVTLHYRDSARLITTIERALEK---SPLD---FNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYC---EAGNGEGCM  114 (142)
Q Consensus        44 ~ell~~Fl~d~~~~l~~L~~al~~---~d~D---~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~---~~~~~~~~~  114 (142)
                      .+++..|++++.+.+..|...+..   +..|   ...+.+.+|+|||||+.+|+..+..+|..+|..-   |+|...--.
T Consensus         6 ~~~l~~F~~Ea~e~L~~l~~~Ll~le~~~~d~~~l~~ifR~~HTlKG~a~~~g~~~i~~laH~~E~~l~~~r~g~~~~~~   85 (225)
T 2lp4_A            6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNT   85 (225)
T ss_dssp             GGTHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence            478999999999999999998843   2112   4688899999999999999999999999999554   555544334


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 045628          115 KTFQLLKRDYATLRRKL  131 (142)
Q Consensus       115 ~~~~~l~~~~~~~~~~L  131 (142)
                      ..+.-+...+..+...+
T Consensus        86 ~~~~ll~~~~D~l~~~l  102 (225)
T 2lp4_A           86 DIINLFLETKDIMQEQL  102 (225)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44444444444444433

>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A

Probab=89.35  E-value=3.4  Score=28.84  Aligned_cols=79  Identities=13%  Similarity=0.184  Sum_probs=52.0

Q ss_pred             HHhHHHHHHH-HHHHHhcCCCCHHHHHHHhhhhccccc--------cc----------ChHHHHHHHHHHHHHHHcCChh
Q 045628           51 YRDSARLITT-IERALEKSPLDFNKLDGYMHQFKGSST--------SI----------GAKKVKAESTQFREYCEAGNGE  111 (142)
Q Consensus        51 l~d~~~~l~~-L~~al~~~d~D~~~~~~~aH~LKGss~--------~i----------Ga~~L~~~c~~lE~~~~~~~~~  111 (142)
                      +.++.+.+.+ |...|+++|  |..++...|.-=|...        ++          =+..|...-..|-.+++.+|..
T Consensus        32 i~~ar~Rl~e~L~~lI~~~~--W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~AA~~~n~~  109 (133)
T 3ls0_A           32 IAVARDGMEKRLQGLIADQN--WVDTQTYIHGPLGQLRRDMLGLASSLLPKDQDKAKTLAKEVFGHLERLDAAAKDRNGS  109 (133)
T ss_dssp             HHHHHHHHHHTHHHHHHTTC--HHHHHHHHHTTTTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHhHHHHHHHhhhcc--hHHHHHHHhchHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            3566778899 999999998  9999999997554322        11          0223334444556667776666


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045628          112 GCMKTFQLLKRDYATLRRKLEAYFQQA  138 (142)
Q Consensus       112 ~~~~~~~~l~~~~~~~~~~L~~~l~~~  138 (142)
                      .+..       +|.++...+..|+...
T Consensus       110 ~a~k-------~Y~~a~adfdafl~li  129 (133)
T 3ls0_A          110 QAKI-------QYQEALADFDSFLNLL  129 (133)
T ss_dssp             HHHH-------HHHHHHHHHHHHHHHC
T ss_pred             HHHH-------HHHHHHHHHHHHHHhc
Confidence            5554       5666666777776654

>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}

Probab=87.61  E-value=3.2  Score=28.88  Aligned_cols=77  Identities=9%  Similarity=0.193  Sum_probs=50.8

Q ss_pred             HhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhccccc--------cc-C---------hHHHHHHHHHHHHHHHcCChhhH
Q 045628           52 RDSARLITTIERALEKSPLDFNKLDGYMHQFKGSST--------SI-G---------AKKVKAESTQFREYCEAGNGEGC  113 (142)
Q Consensus        52 ~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~--------~i-G---------a~~L~~~c~~lE~~~~~~~~~~~  113 (142)
                      .++.+.+.+|...|+++|  |..++...|.-=|...        ++ .         +..|.+.-..|-.+++.+|...+
T Consensus        31 ~~~r~Rl~eL~~lI~~~~--W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~AA~~~n~~~a  108 (130)
T 3zsu_A           31 EKNAERFADLEVSVAKGD--WQEARNIMRGPLGEMLMDMRALNRNLLAKDQPTPTALTRALTDDFLKIDQGADLDSVTVA  108 (130)
T ss_dssp             HHHHTTHHHHHHHHHTTC--HHHHHHHHHTHHHHHHHHHHHHHHTSCGGGSHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHhhcc--hHHHHHHHhchHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            456677899999999998  9999999996544321        11 1         23344445566677777777666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 045628          114 MKTFQLLKRDYATLRRKLEAYFQQ  137 (142)
Q Consensus       114 ~~~~~~l~~~~~~~~~~L~~~l~~  137 (142)
                      ..       +|.++...+..|+..
T Consensus       109 ~k-------~Y~~a~adfdafl~l  125 (130)
T 3zsu_A          109 QE-------GFREAEADFKAYLNS  125 (130)
T ss_dssp             HH-------HHHHHHHHHHHHHHH
T ss_pred             HH-------HHHHHHHHHHHHHHh
Confidence            55       456666666666654

>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A

Probab=86.72  E-value=6.7  Score=27.82  Aligned_cols=78  Identities=10%  Similarity=0.086  Sum_probs=51.5

Q ss_pred             HHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhh--------cccccccC----------hHHHHHHHHHHHHHHHcCChhh
Q 045628           51 YRDSARLITTIERALEKSPLDFNKLDGYMHQF--------KGSSTSIG----------AKKVKAESTQFREYCEAGNGEG  112 (142)
Q Consensus        51 l~d~~~~l~~L~~al~~~d~D~~~~~~~aH~L--------KGss~~iG----------a~~L~~~c~~lE~~~~~~~~~~  112 (142)
                      ++++.+.|..++..+++++  |..++...|.=        +.-..+..          +..|..-...|..+++.+|...
T Consensus        52 Ik~~a~~i~~vk~lI~k~~--W~~vrn~LR~~~~~Lr~Dl~~li~slp~~~kk~l~~La~~Lf~~le~LD~AAr~kd~~~  129 (149)
T 1vyk_A           52 AKVSASEILNVKQFIDRKA--WPSLQNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTE  129 (149)
T ss_dssp             HHHHHHHHHTTHHHHHTTC--HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHhhhcc--HHHHHHHHHHhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence            3446667778888899887  99999888842        22222222          2445566667788888888888


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 045628          113 CMKTFQLLKRDYATLRRK  130 (142)
Q Consensus       113 ~~~~~~~l~~~~~~~~~~  130 (142)
                      +...+......|..+.+.
T Consensus       130 a~~~Y~~t~~~ld~vl~~  147 (149)
T 1vyk_A          130 AEKYYGQTVSNINEVLAK  147 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            777666666655555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	142
d1yvia1	142	a.24.10.2 (A:2-143) Histidine-containing phosphotr	8e-35
d1sr2a_	116	a.24.10.4 (A:) Sensor-like histidine kinase YojN,	2e-14
d2a0ba_	118	a.24.10.1 (A:) Aerobic respiration control sensor	8e-14
d2r25a1	166	a.24.10.2 (A:2-167) Phosphorelay protein ypd1 {Bak	2e-08
d1y6da_	114	a.24.10.5 (A:) Phosphorelay protein luxU {Vibrio h	3e-07

>d1yvia1 a.24.10.2 (A:2-143) Histidine-containing phosphotransfer protein HP1 {Rice (Oryza sativa) [TaxId: 4530]} Length = 142

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein-like
domain: Histidine-containing phosphotransfer protein HP1
species: Rice (Oryza sativa) [TaxId: 4530]

 Score =  115 bits (290), Expect = 8e-35
 Identities = 57/132 (43%), Positives = 84/132 (63%), Gaps = 1/132 (0%)

Query: 6   QLRRQLASMRQSLFDQGHLDEQFILLEELQDDA-NPNFVEEVVTLHYRDSARLITTIERA 64
            LR QL ++  S+F QG +DEQF  L+ LQD+   P FV EVVTL   D+ R+I  I   
Sbjct: 4   ALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATL 63

Query: 65  LEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDY 124
           LE+  ++F+K+D Y+HQ KGSS S+GA+KVK    QFR++C+  + +GC+    +++ D+
Sbjct: 64  LEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDF 123

Query: 125 ATLRRKLEAYFQ 136
             LR K +   Q
Sbjct: 124 YDLRNKFQTMLQ 135

>d1sr2a_ a.24.10.4 (A:) Sensor-like histidine kinase YojN, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 116

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Sensor-like histidine kinase YojN, C-terminal domain
domain: Sensor-like histidine kinase YojN, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 63.1 bits (153), Expect = 2e-14
 Identities = 15/112 (13%), Positives = 25/112 (22%), Gaps = 2/112 (1%)

Query: 16  QSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKL 75
             L +     E+        D+           L        +  +      S  DF  L
Sbjct: 6   LQLIEVQLAQEEVTESPLGGDENAQLHASGYYALFVDTVPDDVKRLYTEAATS--DFAAL 63

Query: 76  DGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYATL 127
               H+ KG    +     K             +  G  K    +     +L
Sbjct: 64  AQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDVPGIEKYISDIDSYVKSL 115

>d2a0ba_ a.24.10.1 (A:) Aerobic respiration control sensor protein, ArcB {Escherichia coli [TaxId: 562]} Length = 118

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Aerobic respiration control sensor protein, ArcB
domain: Aerobic respiration control sensor protein, ArcB
species: Escherichia coli [TaxId: 562]

 Score = 61.5 bits (149), Expect = 8e-14
 Identities = 18/119 (15%), Positives = 48/119 (40%), Gaps = 4/119 (3%)

Query: 20  DQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYM 79
            +  LD    +LE+  +   P  + + + +  +     ++ +E  L     D   +    
Sbjct: 3   SEALLDIP--MLEQYLELVGPKLITDGLAVFEKMMPGYVSVLESNLTAQ--DKKGIVEEG 58

Query: 80  HQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYATLRRKLEAYFQQA 138
           H+ KG++ S+G + ++    Q +        +   +  + +K ++      L+A+  +A
Sbjct: 59  HKIKGAAGSVGLRHLQQLGQQIQSPDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVAKA 117

>d2r25a1 a.24.10.2 (A:2-167) Phosphorelay protein ypd1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein-like
domain: Phosphorelay protein ypd1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.6 bits (115), Expect = 2e-08
 Identities = 17/123 (13%), Positives = 47/123 (38%), Gaps = 6/123 (4%)

Query: 12  ASMRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLD 71
           +++   + +   L+E    +  + DD + +F + ++      +      ++R L+    +
Sbjct: 1   STIPSEIINWTILNE----IISM-DDDDSDFSKGLIIQFIDQAQTTFAQMQRQLDGEK-N 54

Query: 72  FNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYATLRRKL 131
             +LD   H  KGSS ++G +++     + +            KT  +      ++   +
Sbjct: 55  LTELDNLGHFLKGSSAALGLQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGI 114

Query: 132 EAY 134
              
Sbjct: 115 NID 117

>d1y6da_ a.24.10.5 (A:) Phosphorelay protein luxU {Vibrio harveyi [TaxId: 669]} Length = 114

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein luxU
domain: Phosphorelay protein luxU
species: Vibrio harveyi [TaxId: 669]

 Score = 43.9 bits (103), Expect = 3e-07
 Identities = 16/121 (13%), Positives = 37/121 (30%), Gaps = 9/121 (7%)

Query: 14  MRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFN 73
           M   + +Q  ++E       L  +   + V  ++ +   +    I T+            
Sbjct: 1   MNTDVLNQQKIEE-------LSAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGSE--QLL 51

Query: 74  KLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYATLRRKLEA 133
            L    H  K S+ S GA ++   +    +  +A   +        +       R    +
Sbjct: 52  YLKEISHALKSSAASFGADRLCERAIAIDKKAKANQLQEQGMETSEMLALLHITRDAYRS 111

Query: 134 Y 134
           +
Sbjct: 112 W 112

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	142
d1yvia1	142	Histidine-containing phosphotransfer protein HP1 {	99.97
d2a0ba_	118	Aerobic respiration control sensor protein, ArcB {	99.88
d2r25a1	166	Phosphorelay protein ypd1 {Baker's yeast (Saccharo	99.85
d1y6da_	114	Phosphorelay protein luxU {Vibrio harveyi [TaxId:	99.83
d1sr2a_	116	Sensor-like histidine kinase YojN, C-terminal doma	99.79
d2ooca1	104	Histidine phosphotransferase ShpA {Caulobacter cre	99.68
d1tqga_	105	Chemotaxis protein CheA P1 domain {Thermotoga mari	99.09
d1i5na_	128	Chemotaxis protein CheA P1 domain {Salmonella typh	98.98
d1nzea_	112	Oxygen-evolving enhancer protein 3, {Spinach (Spin	92.53
d1fpoa2	95	HSC20 (HSCB), C-terminal oligomerisation domain {E	89.91

>d1yvia1 a.24.10.2 (A:2-143) Histidine-containing phosphotransfer protein HP1 {Rice (Oryza sativa) [TaxId: 4530]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein-like
domain: Histidine-containing phosphotransfer protein HP1
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.97  E-value=9.1e-31  Score=187.71  Aligned_cols=136  Identities=42%  Similarity=0.740  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHHHhcccccCChHHHHHHHHhhcc-cCChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhh
Q 045628            4 NQQLRRQLASMRQSLFDQGHLDEQFILLEELQD-DANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQF   82 (142)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~g~lD~~~~~L~~L~~-~~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~L   82 (142)
                      +-.||+++...+.+++++|+||.+|.++..|.+ +|+|+|+.+|+..|++++++.|..|+.+++.++.||..++..||+|
T Consensus         2 ~~~l~~~~~~~~~~~~~~g~lD~~f~~l~~l~~~~~~~~fl~eli~~Fl~~~~~~l~~l~~al~~~~~D~~~~~~~aH~L   81 (142)
T d1yvia1           2 AAALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQL   81 (142)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHC---CTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhHHhcccccHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            457999999999999999999999999999987 6889999999999999999999999999986534599999999999


Q ss_pred             cccccccChHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 045628           83 KGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYATLRRKLEAYFQQAL  139 (142)
Q Consensus        83 KGss~~iGa~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~~  139 (142)
                      ||||+++||.+++.+|..||.+++.++.+.+...+.+|+.+|..++.+|++|++.++
T Consensus        82 KGss~~lGa~~l~~~~~~lE~~~~~~~~~~~~~~~~~L~~e~~~l~~~L~~~l~~~~  138 (142)
T d1yvia1          82 KGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFYDLRNKFQTMLQLEQ  138 (142)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHhhccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999765

>d2a0ba_ a.24.10.1 (A:) Aerobic respiration control sensor protein, ArcB {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Aerobic respiration control sensor protein, ArcB
domain: Aerobic respiration control sensor protein, ArcB
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=5.7e-23  Score=141.64  Aligned_cols=113  Identities=15%  Similarity=0.201  Sum_probs=104.4

Q ss_pred             cCChHH-HHHHHHhhcccCChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHH
Q 045628           21 QGHLDE-QFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAEST   99 (142)
Q Consensus        21 ~g~lD~-~~~~L~~L~~~~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~   99 (142)
                      +++||. .+.++...   .+++++.+++..|++++|+.+..|+.+++++|  ++.+++.+|+|||+|+++|+..++.+|.
T Consensus         4 e~~lD~~~L~~l~~~---~g~~~~~~~l~~F~~~~~~~l~~l~~a~~~~d--~~~~~~~aH~LKgsa~~~G~~~l~~~~~   78 (118)
T d2a0ba_           4 EALLDIPMLEQYLEL---VGPKLITDGLAVFEKMMPGYVSVLESNLTAQD--KKGIVEEGHKIKGAAGSVGLRHLQQLGQ   78 (118)
T ss_dssp             HHHSCHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cccCCHHHHHHHHHH---hCHHHHHHHHHHHHHHhHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            467787 46665554   57999999999999999999999999999998  9999999999999999999999999999


Q ss_pred             HHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045628          100 QFREYCEAGNGEGCMKTFQLLKRDYATLRRKLEAYFQQA  138 (142)
Q Consensus       100 ~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~  138 (142)
                      .||.+++.++.+.+...+.+|+..++.....|+.|+...
T Consensus        79 ~lE~~~~~~~~~~~~~~l~~l~~~~~~~~~~L~~~l~~~  117 (118)
T d2a0ba_          79 QIQSPDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVAKA  117 (118)
T ss_dssp             HHTCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999999999999999999999753

>d2r25a1 a.24.10.2 (A:2-167) Phosphorelay protein ypd1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein-like
domain: Phosphorelay protein ypd1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=4.3e-21  Score=140.20  Aligned_cols=114  Identities=14%  Similarity=0.251  Sum_probs=101.8

Q ss_pred             cCChHH-HHHHHHhhcccCChHHHHHHHHHHHHhHHHHHHHHHHHHhc-CCCCHHHHHHHhhhhcccccccChHHHHHHH
Q 045628           21 QGHLDE-QFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEK-SPLDFNKLDGYMHQFKGSSTSIGAKKVKAES   98 (142)
Q Consensus        21 ~g~lD~-~~~~L~~L~~~~~~~~l~ell~~Fl~d~~~~l~~L~~al~~-~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c   98 (142)
                      ..+||. +|.+|..|.+ ++|+|+.+||..|++++++.+..|+.++++ +|  +..+..+||+|||||+++|+.++...|
T Consensus         5 ~~~id~~~l~~l~~m~~-~d~~f~~~li~~F~~~~~~~~~~l~~al~~~~d--~~~l~~~aH~lKgss~~~G~~~~~~~~   81 (166)
T d2r25a1           5 SEIINWTILNEIISMDD-DDSDFSKGLIIQFIDQAQTTFAQMQRQLDGEKN--LTELDNLGHFLKGSSAALGLQRIAWVC   81 (166)
T ss_dssp             SCSSCHHHHHHHHHTTT-TSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            368998 6999999965 789999999999999999999999999965 66  999999999999999999999999999


Q ss_pred             HHHHHHHHcCC--------------------------------------------hhhHHHHHHHHHHHHHHHHHHHHHH
Q 045628           99 TQFREYCEAGN--------------------------------------------GEGCMKTFQLLKRDYATLRRKLEAY  134 (142)
Q Consensus        99 ~~lE~~~~~~~--------------------------------------------~~~~~~~~~~l~~~~~~~~~~L~~~  134 (142)
                      ..||..++.++                                            ...+...+.+.+..|..+...|..|
T Consensus        82 ~~ie~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~l~~I~~~L~~a~d~~~~a~~~L~~~  161 (166)
T d2r25a1          82 ERIQNLGRKMEHFFPNKTELVNTLSDKSIINGINIDEDDEEIKIQVDDKDENSIYLILIAKALNQSRLEFKLARIELSKY  161 (166)
T ss_dssp             HHHHHHHTTCCCCCCCHHHHHTTCSSGGGGSSSCTTTTCCCCCCCSSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcccccchhHHHHHHHHHHHHHHHHHhhhhcccccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998643                                            1236788889999999999999999


Q ss_pred             HHH
Q 045628          135 FQQ  137 (142)
Q Consensus       135 l~~  137 (142)
                      +..
T Consensus       162 ~~~  164 (166)
T d2r25a1         162 YNT  164 (166)
T ss_dssp             TTS
T ss_pred             hcc
Confidence            764

>d1y6da_ a.24.10.5 (A:) Phosphorelay protein luxU {Vibrio harveyi [TaxId: 669]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein luxU
domain: Phosphorelay protein luxU
species: Vibrio harveyi [TaxId: 669]

Probab=99.83  E-value=1.5e-22  Score=138.61  Aligned_cols=111  Identities=13%  Similarity=0.113  Sum_probs=101.6

Q ss_pred             ccCChHH-HHHHHHhhcccCChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHH
Q 045628           20 DQGHLDE-QFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAES   98 (142)
Q Consensus        20 ~~g~lD~-~~~~L~~L~~~~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c   98 (142)
                      ++++||. ++++|...   .+++++.+|+..|+++.++.+..|..++..+|  ++.+++.||+|||+|+++|+.+|+.+|
T Consensus         2 ~~~lld~~~l~~L~~~---~G~e~~~~ll~~F~~~~~~~~~~L~~a~~~~d--~~~l~~~aH~LKGsa~~~Ga~~L~~~~   76 (114)
T d1y6da_           2 NTDVLNQQKIEELSAE---IGSDNVPVLLDIFLGEMDSYIGTLTELQGSEQ--LLYLKEISHALKSSAASFGADRLCERA   76 (114)
T ss_dssp             CCTTTTTTHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHTTTTSSHHH--HHHHHHHHHHHHHHHHHHTTTHHHHHH
T ss_pred             CHHHCCHHHHHHHHHH---hCHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC--HHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            4678888 57776543   45789999999999999999999999999998  999999999999999999999999999


Q ss_pred             HHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045628           99 TQFREYCEAGNGEGCMKTFQLLKRDYATLRRKLEAYF  135 (142)
Q Consensus        99 ~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l  135 (142)
                      ..||.+++.++.+.+...+..+...+.++..+++.|.
T Consensus        77 ~~lE~~~~~~~~~~~~~~~~~l~~~~~~t~~a~r~w~  113 (114)
T d1y6da_          77 IAIDKKAKANQLQEQGMETSEMLALLHITRDAYRSWT  113 (114)
T ss_dssp             HHHHHHHHHHHHCTTTSTTTTTTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999998874

>d1sr2a_ a.24.10.4 (A:) Sensor-like histidine kinase YojN, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Sensor-like histidine kinase YojN, C-terminal domain
domain: Sensor-like histidine kinase YojN, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=8.5e-20  Score=125.82  Aligned_cols=86  Identities=13%  Similarity=0.075  Sum_probs=82.2

Q ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 045628           40 PNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQL  119 (142)
Q Consensus        40 ~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~~~~~~~~~~~~~  119 (142)
                      +.|+.+++..|++++|..+..|+.+++++|  |..+++.||+|||||+++|+..++.+|..||.+++.++.+.+...+.+
T Consensus        30 ~~~~~~~~~lF~~~~p~~l~~L~~a~~~~D--~~~l~~~aH~LKGs~~~~Ga~~l~~~~~~lE~~~~~~~~~~~~~ll~~  107 (116)
T d1sr2a_          30 QLHASGYYALFVDTVPDDVKRLYTEAATSD--FAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDVPGIEKYISD  107 (116)
T ss_dssp             HHHHHTTHHHHTTTHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHCcC--HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            457888999999999999999999999998  999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 045628          120 LKRDYATL  127 (142)
Q Consensus       120 l~~~~~~~  127 (142)
                      |...+.++
T Consensus       108 le~~~~~l  115 (116)
T d1sr2a_         108 IDSYVKSL  115 (116)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99888775

>d2ooca1 a.24.10.6 (A:8-111) Histidine phosphotransferase ShpA {Caulobacter crescentus [TaxId: 155892]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: SphA-like
domain: Histidine phosphotransferase ShpA
species: Caulobacter crescentus [TaxId: 155892]

Probab=99.68  E-value=3.2e-17  Score=111.00  Aligned_cols=76  Identities=20%  Similarity=0.264  Sum_probs=65.0

Q ss_pred             CChHHHHHHHHhhcccCChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHHHH
Q 045628           22 GHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQF  101 (142)
Q Consensus        22 g~lD~~~~~L~~L~~~~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~l  101 (142)
                      |.||.  +.|..+.. ||++++.+|+..|+++++..+..+     +.|  ++.+++.+|+|||||+|+||.+|+.+|..|
T Consensus         1 gaiD~--~~L~~~~g-gd~~l~~~ll~~F~e~~~~~~~~l-----~~d--~~~~~~~aH~LKGsa~~iGa~~L~~~a~~l   70 (104)
T d2ooca1           1 GAVDF--AYLEGFAA-GDFAVVDEVLALFREQAALWAPML-----DPT--HPGWKDAVHTVKGAARGVGAFNLGEVCERC   70 (104)
T ss_dssp             CCSCH--HHHHHHTT-TCHHHHHHHHHHHHHHHHHHGGGC-----STT--STTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CccCH--HHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHHH-----ccC--HHHHHHHHHHHHhHHHHcCHHHHHHHHHHH
Confidence            44554  45566654 799999999999999999988665     345  999999999999999999999999999999


Q ss_pred             HHHHHc
Q 045628          102 REYCEA  107 (142)
Q Consensus       102 E~~~~~  107 (142)
                      |.++++
T Consensus        71 E~~~~~   76 (104)
T d2ooca1          71 EAGQES   76 (104)
T ss_dssp             HTTSSC
T ss_pred             HHHHHc
Confidence            998876

>d1tqga_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Chemotaxis protein CheA P1 domain
domain: Chemotaxis protein CheA P1 domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.09  E-value=2.3e-10  Score=76.20  Aligned_cols=86  Identities=9%  Similarity=0.139  Sum_probs=63.1

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHhc-----CCC-CHHHHHHHhhhhcccccccChHHHHHHHHHHHHH---HHcCChhhHH
Q 045628           44 EEVVTLHYRDSARLITTIERALEK-----SPL-DFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREY---CEAGNGEGCM  114 (142)
Q Consensus        44 ~ell~~Fl~d~~~~l~~L~~al~~-----~d~-D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~---~~~~~~~~~~  114 (142)
                      .+++..|++++.+.+..+...+..     .|. ....+.+.+|+|||+|+.+|+..+..+|..+|..   .+.+....-.
T Consensus         4 ~E~l~~Fl~Ea~e~l~~l~~~l~~le~~~~~~~~~~~l~R~~HTLKG~a~~~gl~~i~~lah~lE~~l~~~~~~~~~~~~   83 (105)
T d1tqga_           4 MEYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKITS   83 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTSSCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCchhhcCHHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence            478999999999999999998842     221 1567889999999999999999999999999965   4445433333


Q ss_pred             HHHHHHHHHHHHHHH
Q 045628          115 KTFQLLKRDYATLRR  129 (142)
Q Consensus       115 ~~~~~l~~~~~~~~~  129 (142)
                      ..+..+...+..+..
T Consensus        84 ~~~~~l~~~~d~l~~   98 (105)
T d1tqga_          84 DLLDKIFAGVDMITR   98 (105)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            444444444444333

>d1i5na_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Salmonella typhimurium [TaxId: 90371]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Chemotaxis protein CheA P1 domain
domain: Chemotaxis protein CheA P1 domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.98  E-value=1.1e-09  Score=75.01  Aligned_cols=89  Identities=13%  Similarity=0.268  Sum_probs=65.1

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHhc---CCCC---HHHHHHHhhhhcccccccChHHHHHHHHHHHHHHH---cCChhhHH
Q 045628           44 EEVVTLHYRDSARLITTIERALEK---SPLD---FNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCE---AGNGEGCM  114 (142)
Q Consensus        44 ~ell~~Fl~d~~~~l~~L~~al~~---~d~D---~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~---~~~~~~~~  114 (142)
                      .+++..|++++.+.+..+...+..   +.-|   ...+.+.+|+|||+|+.+|...+..+|..+|....   .+...--.
T Consensus         3 ~e~~~~F~~Ea~e~l~~l~~~l~~le~~~~~~~~~~~l~R~~HTLKG~a~~~gl~~i~~lah~lE~~l~~lr~~~~~~~~   82 (128)
T d1i5na_           3 SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNT   82 (128)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhHHhhcChHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence            467899999999999999999832   2112   35888999999999999999999999999997644   45444334


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 045628          115 KTFQLLKRDYATLRRKLE  132 (142)
Q Consensus       115 ~~~~~l~~~~~~~~~~L~  132 (142)
                      ..+..+...+..+...+.
T Consensus        83 ~~~~~l~~~~d~l~~~l~  100 (128)
T d1i5na_          83 DIINLFLETKDIMQEQLD  100 (128)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            444555555544444443

>d1nzea_ a.24.18.1 (A:) Oxygen-evolving enhancer protein 3, {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Oxygen-evolving enhancer protein 3,
family: Oxygen-evolving enhancer protein 3,
domain: Oxygen-evolving enhancer protein 3,
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=92.53  E-value=0.4  Score=30.84  Aligned_cols=76  Identities=9%  Similarity=0.103  Sum_probs=53.0

Q ss_pred             HhHHHHHHHHHHHHhcCCCCHHHHHHHhhh--------hcccccccCh----------HHHHHHHHHHHHHHHcCChhhH
Q 045628           52 RDSARLITTIERALEKSPLDFNKLDGYMHQ--------FKGSSTSIGA----------KKVKAESTQFREYCEAGNGEGC  113 (142)
Q Consensus        52 ~d~~~~l~~L~~al~~~d~D~~~~~~~aH~--------LKGss~~iGa----------~~L~~~c~~lE~~~~~~~~~~~  113 (142)
                      .++.+.|..|...|++++  |..++...|.        |+.-..+.+.          ..|......|..+++.+|...+
T Consensus        16 ~~sa~~L~~l~~lI~k~~--W~~v~~~Lr~~~~~Lr~dl~~li~~~~~~~k~~~~~la~~lf~~le~LD~Aar~kd~~~a   93 (112)
T d1nzea_          16 KVSASEILNVKQFIDRKA--WPSLQNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEA   93 (112)
T ss_dssp             HHHHHHHHTTHHHHHTTC--HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHhhcc--HHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            567778888888888887  8888888886        3333333332          3466666778888899888887


Q ss_pred             HHHHHHHHHHHHHHHH
Q 045628          114 MKTFQLLKRDYATLRR  129 (142)
Q Consensus       114 ~~~~~~l~~~~~~~~~  129 (142)
                      ...+......+..+.+
T Consensus        94 ~~~Y~~t~~~ld~~la  109 (112)
T d1nzea_          94 EKYYGQTVSNINEVLA  109 (112)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7766666555555443

>d1fpoa2 a.23.1.1 (A:77-171) HSC20 (HSCB), C-terminal oligomerisation domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Open three-helical up-and-down bundle
superfamily: HSC20 (HSCB), C-terminal oligomerisation domain
family: HSC20 (HSCB), C-terminal oligomerisation domain
domain: HSC20 (HSCB), C-terminal oligomerisation domain
species: Escherichia coli [TaxId: 562]

Probab=89.91  E-value=0.63  Score=28.76  Aligned_cols=52  Identities=15%  Similarity=0.213  Sum_probs=23.8

Q ss_pred             HHHHHHHhhhhcccccccChHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHH
Q 045628           72 FNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYATLRRKLE  132 (142)
Q Consensus        72 ~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~  132 (142)
                      ...+..+.+.+++        ++......+..+-..++++.+...+.+++= |..+...++
T Consensus        35 ~~~l~~l~~ei~~--------~~~~~~~~l~~~~~~~d~~~A~~~~~kLkF-~~kl~~ei~   86 (95)
T d1fpoa2          35 EARLESFIKRVKK--------MFDTRHQLMVEQLDNETWDAAADTCRKLRF-LDKLRSSAE   86 (95)
T ss_dssp             HHHHHHHHHHHHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHH--------HHHHHHHHHHHHHhhccHHHHHHHHHHhHH-HHHHHHHHH
Confidence            4445554444443        234444444444455555555555444432 333433333