Citrus Sinensis ID: 045642

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400------
MPDIQALVSDLPSKLRKRRVQGSYETARLTAELLRAVILQHKEPTASGAASLIEAVRRVGEQLIAANPVELAVGNIVRHVLHIIREEDLSPLTDIVGELKLSAEDDVEDIAEDENSQKSSATTDGCLLKPPLLLAVFEHLPDSAPACQTFSSENIFAGKADKSAKKLKSELIKAVNELIEDINTCREGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELCSLYPHNLEVLLNEMRCPSELLNFEEFSDCIDYGIASSSSLLHVVNPAFDYVPPELIRLFVTDIGGYSPSYIYRLIADYYSSEDLPPQQKPAS
cccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHcccccccccHHHHHcccHHHHHHHHHHccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHccccEEEEcHHHHHHHcccccEEEEcccEEEcccccccHHHHHHHHHHHHHccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccEEEEccccccccHHHHHHHHHcccccccccccccc
cccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHcHcccHHHHHHHHHccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHccccEEEEcHHHHHHHHHHccEEEEEcHHHHcccHHHHHHHHHHHHHHHHHccccEEEEEccEEEcccccccccEEHHHcccHHHccccccccccccccccccccccEEEccccccccHHHEEEEEEccccccHHHHHHHHHHHccccHcEccccccc
MPDIQALVSDlpsklrkrrvqGSYETARLTAELLRAVILQhkeptasgAASLIEAVRRVGEQLIAANPVELAVGNIVRHVLHIireedlspltDIVGElklsaeddvediaedensqkssattdgcllkppLLLAVFehlpdsapacqtfssenifagkaDKSAKKLKSELIKAVNELIEDINTCREGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFiadgapkfegHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVManggviapaGLHVLALAAKKHDVPFVVVASTHELCSLYPHNLEVLLNemrcpsellnfeefsdcidygiassssllhvvnpafdyvppeLIRLFVTDIGGYSPSYIYRLIAdyyssedlppqqkpas
mpdiqalvsdlpsklrkrrvqgSYETARLTAELLRAVILQHKEPTASGAASLIEAVRRVGEQLIAANPVELAVGNIVRHVLHIireedlsplTDIVGELKLSAEDDVEDIAEdensqkssattdgcLLKPPLLLAVFEHLPDSAPACQTFSSENIFAGKADKSAKKLKSELIKAVNELIEDINTCREGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELCSLYPHNLEVLLNEMRCPSELLNFEEFSDCIDYGIASSSSLLHVVNPAFDYVPPELIRLFVTDIGGYSPSYIYRLIADYYSSedlppqqkpas
MPDIQALVSDLPSKLRKRRVQGSYETARLTAELLRAVILQHKEPTASGAASLIEAVRRVGEQLIAANPVELAVGNIVRHVLHIIREEDLSPLTDIVGELKLSaeddvediaedeNSQKSSATTDGCLLKPPLLLAVFEHLPDSAPACQTFSSENIFAGKADKSAKKLKSELIKAVNELIEDINTCREGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELCSLYPHNLEVLLNEMRCPSELLNFEEFSDCIDYGIASSSSLLHVVNPAFDYVPPELIRLFVTDIGGYSPSYIYRLIADYYSSEDLPPQQKPAS
***********************YETARLTAELLRAVILQHKEPTASGAASLIEAVRRVGEQLIAANPVELAVGNIVRHVLHIIREEDLSPLTDIVGELK************************GCLLKPPLLLAVFEHLPDSAPACQTFSSENIFA**********KSELIKAVNELIEDINTCREGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELCSLYPHNLEVLLNEMRCPSELLNFEEFSDCIDYGIASSSSLLHVVNPAFDYVPPELIRLFVTDIGGYSPSYIYRLIADYY*************
**DIQALVSDLPSKLRKRRVQGSYETARLTAELLRAVILQHKEPTASGAASLIEAVRRVGEQLIAANPVELAVGNIVRHVLHIIREEDLSPLTDIVG**KLSA**************************************DSAPACQTFSS**************LKSELIKAVNELIEDINTCREGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELCSLYPHNLEVLLNEMRCPSELLNFEEFSDCIDYGIASSSSLLHVVNPAFDYVPPELIRLFVTDIGGYSPSYIYRLIADYYSSEDL*P******
MPDIQALVSDLPSKLRKRRVQGSYETARLTAELLRAVILQHKEPTASGAASLIEAVRRVGEQLIAANPVELAVGNIVRHVLHIIREEDLSPLTDIVGELKLSAEDDVE**************TDGCLLKPPLLLAVFEHLPDSAPACQTFSSENIFAGKADKSAKKLKSELIKAVNELIEDINTCREGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELCSLYPHNLEVLLNEMRCPSELLNFEEFSDCIDYGIASSSSLLHVVNPAFDYVPPELIRLFVTDIGGYSPSYIYRLIADYYSSE**********
MPDIQALVSDLPSKLRKRRVQGSYETARLTAELLRAVILQHKEPTASGAASLIEAVRRVGEQLIAANPVELAVGNIVRHVLHIIREEDLSPLTD********************************LLKPPLLLAVFEHLPDSAPACQTFSSENIFAGKADKSAKKLKSELIKAVNELIEDINTCREGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELCSLYPHNLEVLLNEMRCPSELLNFEEFSDCIDYGIASSSSLLHVVNPAFDYVPPELIRLFVTDIGGYSPSYIYRLIADYYSSEDLPP******
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MPDIQALVSDLPSKLRKRRVQGSYETARLTAELLRAVILQHKEPTASGAASLIEAVRRVGEQLIAANPVELAVGNIVRHVLHIIREEDLSPLTDIVGELKLSAEDDVEDIAEDENSQKSSATTDGCLLKPPLLLAVFEHLPDSAPACQTFSSENIFAGKADKSAKKLKSELIKAVNELIEDINTCREGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELCSLYPHNLEVLLNEMRCPSELLNFEEFSDCIDYGIASSSSLLHVVNPAFDYVPPELIRLFVTDIGGYSPSYIYRLIADYYSSEDLPPQQKPAS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query406 2.2.26 [Sep-21-2011]
Q90511355 Translation initiation fa N/A no 0.825 0.943 0.381 1e-59
Q5E9B4351 Translation initiation fa yes no 0.837 0.968 0.375 4e-58
P49770351 Translation initiation fa yes no 0.788 0.911 0.387 2e-57
Q28690351 Translation initiation fa yes no 0.788 0.911 0.384 3e-57
Q54EY2388 Translation initiation fa yes no 0.546 0.572 0.480 5e-57
Q99LD9351 Translation initiation fa yes no 0.837 0.968 0.370 9e-56
Q62818351 Translation initiation fa yes no 0.837 0.968 0.365 6e-54
Q9UT76393 Probable translation init yes no 0.906 0.936 0.332 1e-53
P32502381 Translation initiation fa yes no 0.869 0.926 0.301 1e-41
O57947324 Putative translation init yes no 0.527 0.660 0.305 2e-21
>sp|Q90511|EI2BB_TAKRU Translation initiation factor eIF-2B subunit beta OS=Takifugu rubripes GN=eif2b2 PE=3 SV=1 Back     alignment and function desciption
 Score =  230 bits (587), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 152/398 (38%), Positives = 214/398 (53%), Gaps = 63/398 (15%)

Query: 4   IQALVSDLPSKLRKRR-VQGSYETARLTAELLRAVILQHKEPTASGAASLIEAVRRVGEQ 62
           I+A +SDL         ++GS ETAR T  LLR +  Q +    S A  L+E +R+ G +
Sbjct: 14  IEAFLSDLKRGGSGTGPLRGSSETARETTALLRRITAQAR---WSSAGDLMEIIRKEGRR 70

Query: 63  LIAANPVELAVGNIVRHVLHIIREEDLSPLTDIVGELKLSAEDDVEDIAEDENSQKSSAT 122
           LIAA P E  VGN++R VL IIREE            + S+E+     A+ + S     T
Sbjct: 71  LIAAQPSETTVGNMIRRVLKIIREE--------YARSRGSSEE-----ADQQESLHKLLT 117

Query: 123 TDGCLLKPPLLLAVFEHLPDSAPACQTFSSENIFAGKADKSAKKLKSELIKAVNELIEDI 182
           + G                         S EN       +    L++ +I+A+NEL+ ++
Sbjct: 118 SGG------------------------LSEENF-----RQHFAALRANVIEAINELLTEL 148

Query: 183 NTCREGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHIL 242
               + IA QA+E IH NEVI+T+G S+ V+ FL  A  +KR F V +A+ AP  +GH +
Sbjct: 149 EGTTDNIAMQALEHIHSNEVIMTVGRSRTVEAFLKDAA-RKRKFHVIVAECAPFCQGHKM 207

Query: 243 AKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDV 302
           A  L   G++  VI D+A+FA++SRVN VI+G   V+ANGG+ A  G H LALAAK H  
Sbjct: 208 ATSLSTAGIETTVIADAAIFAVMSRVNKVIIGTQTVLANGGLRAVNGTHTLALAAKHHST 267

Query: 303 PFVVVASTHELCSLYPHNLEVLLNEMRCPSELLNFEEFSDCIDYGIASSSSLLHVVN--- 359
           P +V A   +L   +P N E   ++   P E+L F E              +L  VN   
Sbjct: 268 PLIVCAPMFKLSPQFP-NEEDTFHKFVSPHEVLPFTE------------GEILSKVNVHC 314

Query: 360 PAFDYVPPELIRLFVTDIGGYSPSYIYRLIADYYSSED 397
           P FDYVPPELI LF+++IGG++PSYIYRL+++ Y  ED
Sbjct: 315 PVFDYVPPELITLFISNIGGHAPSYIYRLMSELYHPED 352
Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.
Takifugu rubripes (taxid: 31033)
>sp|Q5E9B4|EI2BB_BOVIN Translation initiation factor eIF-2B subunit beta OS=Bos taurus GN=EIF2B2 PE=2 SV=1 Back     alignment and function description
>sp|P49770|EI2BB_HUMAN Translation initiation factor eIF-2B subunit beta OS=Homo sapiens GN=EIF2B2 PE=1 SV=3 Back     alignment and function description
>sp|Q28690|EI2BB_RABIT Translation initiation factor eIF-2B subunit beta OS=Oryctolagus cuniculus GN=EIF2B2 PE=1 SV=1 Back     alignment and function description
>sp|Q54EY2|EI2BB_DICDI Translation initiation factor eIF-2B subunit beta OS=Dictyostelium discoideum GN=eif2b2 PE=3 SV=1 Back     alignment and function description
>sp|Q99LD9|EI2BB_MOUSE Translation initiation factor eIF-2B subunit beta OS=Mus musculus GN=Eif2b2 PE=2 SV=1 Back     alignment and function description
>sp|Q62818|EI2BB_RAT Translation initiation factor eIF-2B subunit beta OS=Rattus norvegicus GN=Eif2b2 PE=2 SV=1 Back     alignment and function description
>sp|Q9UT76|EI2BB_SCHPO Probable translation initiation factor eIF-2B subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tif222 PE=1 SV=1 Back     alignment and function description
>sp|P32502|EI2BB_YEAST Translation initiation factor eIF-2B subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GCD7 PE=1 SV=1 Back     alignment and function description
>sp|O57947|EI2B2_PYRHO Putative translation initiation factor eIF-2B subunit 2 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH0208 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query406
359487218417 PREDICTED: translation initiation factor 1.0 0.973 0.633 1e-139
224075832420 predicted protein [Populus trichocarpa] 0.997 0.964 0.625 1e-138
224053287419 predicted protein [Populus trichocarpa] 1.0 0.968 0.630 1e-138
224107473412 predicted protein [Populus trichocarpa] 0.997 0.983 0.615 1e-137
449452008416 PREDICTED: translation initiation factor 0.980 0.956 0.628 1e-136
7757910415 putative translation initiation factor 2 0.987 0.966 0.595 1e-134
356549567415 PREDICTED: translation initiation factor 0.995 0.973 0.609 1e-132
356520591415 PREDICTED: translation initiation factor 0.995 0.973 0.607 1e-132
194700802416 unknown [Zea mays] gi|413934282|gb|AFW68 1.0 0.975 0.579 1e-130
31431852414 Initiation factor 2 subunit family prote 1.0 0.980 0.578 1e-130
>gi|359487218|ref|XP_002272876.2| PREDICTED: translation initiation factor eIF-2B subunit beta-like isoform 1 [Vitis vinifera] gi|359487220|ref|XP_003633538.1| PREDICTED: translation initiation factor eIF-2B subunit beta-like isoform 2 [Vitis vinifera] gi|297742689|emb|CBI35142.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 263/415 (63%), Positives = 324/415 (78%), Gaps = 9/415 (2%)

Query: 1   MPDIQALVSDLPSKLRKRRVQGSYETARLTAELLRAVILQHKEPTASGAASLIEAVRRVG 60
           MPD+Q LV++   KL+KR+V+GS  TAR+TAELLR+VI Q + P  + A +LI+A++ VG
Sbjct: 1   MPDVQVLVNEFIIKLKKRKVEGSQATARMTAELLRSVISQQRVPYNNQAGALIDAIKAVG 60

Query: 61  EQLIAANPVELAVGNIVRHVLHIIREEDLSPLTDIVGELKLSAEDDVEDIAEDEN----S 116
           EQLIAANPVELAVGNIVR VLHIIREEDLS  T  V  L LSA  D ED  E E+    S
Sbjct: 61  EQLIAANPVELAVGNIVRRVLHIIREEDLSLATAAVAGLNLSAVSDDEDDGEREDHPVLS 120

Query: 117 QKSSATTDGCLLKPPLLLAVFEHLPDSAPACQTFSSENIFA---GKADKSAK--KLKSEL 171
             + A      L+PP L  + E +PDSA   Q+ SS          ADKS++  KLK ++
Sbjct: 121 AAAVAAAARSTLRPPSLQTLLEDMPDSAAVPQSSSSGGDSEGKSKSADKSSRSRKLKHDI 180

Query: 172 IKAVNELIEDINTCREGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIA 231
           I+AVNELI+DI TC E I+EQA+E IHQNEVILTLG S+ V EFLCAAKEKKRSF VF+A
Sbjct: 181 IEAVNELIQDIATCHEQISEQAVEHIHQNEVILTLGRSRTVMEFLCAAKEKKRSFRVFVA 240

Query: 232 DGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANGGVIAPAGLH 291
           +GAP+++GH+LAKEL  +GL+  +ITDSAVFAMISRVNMVIVG HAVMANGGVIAP GL+
Sbjct: 241 EGAPRYQGHVLAKELVARGLQTTLITDSAVFAMISRVNMVIVGAHAVMANGGVIAPVGLN 300

Query: 292 VLALAAKKHDVPFVVVASTHELCSLYPHNLEVLLNEMRCPSELLNFEEFSDCIDYGIASS 351
           ++ALAA++H VPFVV+A TH+LC LYPHN EVLLNE++ PSELL+F EFSDC+D+G  + 
Sbjct: 301 MVALAAQRHAVPFVVLAGTHKLCPLYPHNPEVLLNELKSPSELLDFGEFSDCMDFGSGNG 360

Query: 352 SSLLHVVNPAFDYVPPELIRLFVTDIGGYSPSYIYRLIADYYSSEDLPPQQKPAS 406
           S LLHVVNPAFDYVPP+L+ LF+TD GG++PSY+YRLIADYYS++DL  Q++PAS
Sbjct: 361 SPLLHVVNPAFDYVPPKLVSLFITDTGGHNPSYMYRLIADYYSADDLVVQRRPAS 415

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224075832|ref|XP_002304788.1| predicted protein [Populus trichocarpa] gi|222842220|gb|EEE79767.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224053287|ref|XP_002297747.1| predicted protein [Populus trichocarpa] gi|222845005|gb|EEE82552.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224107473|ref|XP_002314491.1| predicted protein [Populus trichocarpa] gi|222863531|gb|EEF00662.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449452008|ref|XP_004143752.1| PREDICTED: translation initiation factor eIF-2B subunit beta-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|7757910|gb|AAD52847.2|AF137288_1 putative translation initiation factor 2B beta subunit [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|356549567|ref|XP_003543164.1| PREDICTED: translation initiation factor eIF-2B subunit beta-like [Glycine max] Back     alignment and taxonomy information
>gi|356520591|ref|XP_003528945.1| PREDICTED: translation initiation factor eIF-2B subunit beta-like [Glycine max] Back     alignment and taxonomy information
>gi|194700802|gb|ACF84485.1| unknown [Zea mays] gi|413934282|gb|AFW68833.1| translation initiation factor eIF-2B beta subunit [Zea mays] Back     alignment and taxonomy information
>gi|31431852|gb|AAP53571.1| Initiation factor 2 subunit family protein, expressed [Oryza sativa Japonica Group] gi|125574670|gb|EAZ15954.1| hypothetical protein OsJ_31399 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query406
TAIR|locus:2079596409 AT3G07300 "AT3G07300" [Arabido 0.975 0.968 0.599 6.9e-118
DICTYBASE|DDB_G0291271388 eif2b2 "translation initiation 0.546 0.572 0.480 2.6e-67
UNIPROTKB|Q90511355 eif2b2 "Translation initiation 0.541 0.619 0.450 5.4e-59
UNIPROTKB|Q5E9B4351 EIF2B2 "Translation initiation 0.544 0.629 0.448 3.8e-58
UNIPROTKB|E2QZN3351 EIF2B2 "Uncharacterized protei 0.544 0.629 0.443 3.8e-58
UNIPROTKB|P49770351 EIF2B2 "Translation initiation 0.544 0.629 0.443 6.1e-58
UNIPROTKB|Q28690351 EIF2B2 "Translation initiation 0.544 0.629 0.448 7.8e-58
UNIPROTKB|F1S2R7351 EIF2B2 "Uncharacterized protei 0.544 0.629 0.443 3.3e-57
ZFIN|ZDB-GENE-040426-2605355 eif2b2 "eukaryotic translation 0.541 0.619 0.445 3.3e-57
MGI|MGI:2145118351 Eif2b2 "eukaryotic translation 0.541 0.626 0.441 1.1e-56
TAIR|locus:2079596 AT3G07300 "AT3G07300" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1161 (413.8 bits), Expect = 6.9e-118, P = 6.9e-118
 Identities = 245/409 (59%), Positives = 302/409 (73%)

Query:     1 MPDIQALVSDLPSKLRKRRVQGSYETARLTAELLRAVILQHKEPTASGAASLIEAVRRVG 60
             MPD+Q+ V +  +KLRKR+++GS  TA+ T ELLR+VI   + P A+ AA+LI+AV+ VG
Sbjct:     1 MPDVQSTVVEFVNKLRKRKIEGSQATAKYTVELLRSVISHQRVPHANQAAALIDAVKAVG 60

Query:    61 EQLIAANPVELAVGNIVRHVLHIIREEDLSPLTDIVGELKL---SXXXXXXXXXXXXNSQ 117
             EQLIAANPVELAVGN+VR VLHIIREEDLS  T  +G L L   S               
Sbjct:    61 EQLIAANPVELAVGNVVRRVLHIIREEDLSLTTAAMGGLDLLDASDDDDVDNCKGIGFPA 120

Query:   118 KSSATTDGCL---LKPPLLLAVFEHLPDSAPACQTFSSENIFAGK---ADKSA--KKLKS 169
              S+A         L+PP L  + E  P+SA    T SS      K   ADKS+  +KLK 
Sbjct:   121 MSAAVVAAAARSTLRPPSLQTLLEGTPESATVPYTSSSGADSESKSKSADKSSLTRKLKH 180

Query:   170 ELIKAVNELIEDINTCREGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVF 229
             ++I+ VN+LI++I  C E IAEQA+E IHQNEVILTLG S+ V EFLCAAKEKKRSF VF
Sbjct:   181 DVIEGVNQLIQEIAGCHEQIAEQAIEHIHQNEVILTLGSSRTVLEFLCAAKEKKRSFRVF 240

Query:   230 IADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANGGVIAPAG 289
             +A+GAP+++GH+LAKEL  +GL+  VITDSAVFAMISRVNMVI+G HAVMANGGVI P G
Sbjct:   241 VAEGAPRYQGHLLAKELVARGLQTTVITDSAVFAMISRVNMVIIGAHAVMANGGVIGPVG 300

Query:   290 LHVLALAAKKHDVPFVVVASTHELCSLYPHNLEVLLNEMRCPSELLNFEEFSDCIDYGIA 349
             +++ ALAA+KH VPFVV+A +H+LC LYPHN EVLLNE+R PSELL+F EFSDC+D+G  
Sbjct:   301 VNMAALAAQKHAVPFVVLAGSHKLCPLYPHNPEVLLNELRSPSELLDFGEFSDCLDFGAG 360

Query:   350 SSSSLLHVVNPAFDYVPPELIRLFVTDIGGYSPSYIYRLIADYYSSEDL 398
             S S  L VVNP FDYVPP L+ LF+TD GG++PSY+YRLIADYYS++DL
Sbjct:   361 SGS--LQVVNPTFDYVPPNLVSLFITDTGGHNPSYMYRLIADYYSADDL 407
GO:0003743 "translation initiation factor activity" evidence=ISS;IBA
GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IBA
GO:0005525 "GTP binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0005851 "eukaryotic translation initiation factor 2B complex" evidence=ISS;IBA
GO:0006413 "translational initiation" evidence=ISS
GO:0006446 "regulation of translational initiation" evidence=IBA
GO:0044237 "cellular metabolic process" evidence=IEA
GO:0050790 "regulation of catalytic activity" evidence=IBA
DICTYBASE|DDB_G0291271 eif2b2 "translation initiation factor eIF-2B beta subunit" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q90511 eif2b2 "Translation initiation factor eIF-2B subunit beta" [Takifugu rubripes (taxid:31033)] Back     alignment and assigned GO terms
UNIPROTKB|Q5E9B4 EIF2B2 "Translation initiation factor eIF-2B subunit beta" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QZN3 EIF2B2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P49770 EIF2B2 "Translation initiation factor eIF-2B subunit beta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q28690 EIF2B2 "Translation initiation factor eIF-2B subunit beta" [Oryctolagus cuniculus (taxid:9986)] Back     alignment and assigned GO terms
UNIPROTKB|F1S2R7 EIF2B2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2605 eif2b2 "eukaryotic translation initiation factor 2B, subunit 2 beta" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:2145118 Eif2b2 "eukaryotic translation initiation factor 2B, subunit 2 beta" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5E9B4EI2BB_BOVINNo assigned EC number0.37530.83740.9686yesno
Q62818EI2BB_RATNo assigned EC number0.36540.83740.9686yesno
Q99LD9EI2BB_MOUSENo assigned EC number0.37030.83740.9686yesno
P32502EI2BB_YEASTNo assigned EC number0.30170.86940.9265yesno
Q9UT76EI2BB_SCHPONo assigned EC number0.33250.90640.9363yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query406
COG1184301 COG1184, GCD2, Translation initiation factor 2B su 9e-61
pfam01008281 pfam01008, IF-2B, Initiation factor 2 subunit fami 5e-55
PRK08535310 PRK08535, PRK08535, translation initiation factor 1e-34
TIGR00511301 TIGR00511, ribulose_e2b2, ribose-1,5-bisphosphate 2e-33
PRK08335275 PRK08335, PRK08335, translation initiation factor 2e-22
TIGR00524303 TIGR00524, eIF-2B_rel, eIF-2B alpha/beta/delta-rel 3e-19
PRK05720344 PRK05720, mtnA, methylthioribose-1-phosphate isome 4e-18
COG0182346 COG0182, COG0182, Predicted translation initiation 1e-17
PRK06372253 PRK06372, PRK06372, translation initiation factor 5e-17
TIGR00512331 TIGR00512, salvage_mtnA, S-methyl-5-thioribose-1-p 2e-14
PRK06371329 PRK06371, PRK06371, translation initiation factor 2e-13
PRK08334356 PRK08334, PRK08334, translation initiation factor 4e-07
COG1184301 COG1184, GCD2, Translation initiation factor 2B su 5e-06
pfam01008281 pfam01008, IF-2B, Initiation factor 2 subunit fami 5e-06
PRK05772363 PRK05772, PRK05772, translation initiation factor 4e-05
PRK06036339 PRK06036, PRK06036, translation initiation factor 8e-05
>gnl|CDD|224105 COG1184, GCD2, Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
 Score =  198 bits (505), Expect = 9e-61
 Identities = 88/227 (38%), Positives = 125/227 (55%), Gaps = 13/227 (5%)

Query: 167 LKSELIKAVNELIEDINTCREGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSF 226
            +  LIKA  E I+ +   +E IAE   E IH  +VILT   SK V E L  A ++ + F
Sbjct: 87  RRQSLIKAAQEFIDRVEKAKERIAEIGAERIHDGDVILTHSFSKTVLEVLKTAADRGKRF 146

Query: 227 EVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANGGVIA 286
           +V + +  P+ EG I+AKEL + G+   VI DSAV A +SRV+ V+VG  A++ANG ++ 
Sbjct: 147 KVIVTESRPRGEGRIMAKELRQSGIPVTVIVDSAVGAFMSRVDKVLVGADAILANGALVN 206

Query: 287 PAGLHVLALAAKKHDVPFVVVASTHELCSLYPHNLEVLLNEMRCPSELLNFEEFSDCIDY 346
             G   LALAA++  VPF VVA +++       +  V   E+R P E+   E   +    
Sbjct: 207 KIGTSPLALAARELRVPFYVVAESYKFVPKTLLDTLV-EIELRDPLEVAREEPLGN---- 261

Query: 347 GIASSSSLLHVVNPAFDYVPPELIRLFVTDIGGYSPSYIYRLIADYY 393
                   L V NPAFD  PPE I   +T++G   PS IYR++ + Y
Sbjct: 262 --------LKVRNPAFDVTPPEYIDAIITELGIIPPSSIYRILRELY 300

Length = 301
>gnl|CDD|216240 pfam01008, IF-2B, Initiation factor 2 subunit family Back     alignment and domain information
>gnl|CDD|236282 PRK08535, PRK08535, translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>gnl|CDD|188057 TIGR00511, ribulose_e2b2, ribose-1,5-bisphosphate isomerase, e2b2 family Back     alignment and domain information
>gnl|CDD|169387 PRK08335, PRK08335, translation initiation factor IF-2B subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|233008 TIGR00524, eIF-2B_rel, eIF-2B alpha/beta/delta-related uncharacterized proteins Back     alignment and domain information
>gnl|CDD|235578 PRK05720, mtnA, methylthioribose-1-phosphate isomerase; Reviewed Back     alignment and domain information
>gnl|CDD|223260 COG0182, COG0182, Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|235788 PRK06372, PRK06372, translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>gnl|CDD|233003 TIGR00512, salvage_mtnA, S-methyl-5-thioribose-1-phosphate isomerase Back     alignment and domain information
>gnl|CDD|180547 PRK06371, PRK06371, translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>gnl|CDD|169386 PRK08334, PRK08334, translation initiation factor IF-2B subunit beta; Validated Back     alignment and domain information
>gnl|CDD|224105 COG1184, GCD2, Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|216240 pfam01008, IF-2B, Initiation factor 2 subunit family Back     alignment and domain information
>gnl|CDD|168237 PRK05772, PRK05772, translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>gnl|CDD|180362 PRK06036, PRK06036, translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 406
KOG1465353 consensus Translation initiation factor 2B, beta s 100.0
TIGR00511301 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e 100.0
PRK08535310 translation initiation factor IF-2B subunit delta; 100.0
COG1184301 GCD2 Translation initiation factor 2B subunit, eIF 100.0
TIGR00524303 eIF-2B_rel eIF-2B alpha/beta/delta-related unchara 100.0
PF01008282 IF-2B: Initiation factor 2 subunit family; InterPr 100.0
PRK05720344 mtnA methylthioribose-1-phosphate isomerase; Revie 100.0
KOG1467556 consensus Translation initiation factor 2B, delta 100.0
PRK08335275 translation initiation factor IF-2B subunit alpha; 100.0
TIGR00512331 salvage_mtnA S-methyl-5-thioribose-1-phosphate iso 100.0
PRK06036339 translation initiation factor IF-2B subunit alpha; 100.0
PRK05772363 translation initiation factor IF-2B subunit alpha; 100.0
PRK08334356 translation initiation factor IF-2B subunit beta; 100.0
PRK06371329 translation initiation factor IF-2B subunit alpha; 100.0
KOG1466313 consensus Translation initiation factor 2B, alpha 100.0
COG0182346 Predicted translation initiation factor 2B subunit 100.0
PRK06372253 translation initiation factor IF-2B subunit delta; 100.0
KOG1468354 consensus Predicted translation initiation factor 100.0
TIGR00021218 rpiA ribose 5-phosphate isomerase. This model desc 97.97
PRK00702220 ribose-5-phosphate isomerase A; Provisional 97.94
PRK10434256 srlR DNA-bindng transcriptional repressor SrlR; Pr 97.8
cd01398213 RPI_A RPI_A: Ribose 5-phosphate isomerase type A ( 97.75
PRK09802269 DNA-binding transcriptional regulator AgaR; Provis 97.59
PRK10906252 DNA-binding transcriptional repressor GlpR; Provis 97.47
PF00455161 DeoRC: DeoR C terminal sensor domain; InterPro: IP 97.32
PRK13509251 transcriptional repressor UlaR; Provisional 97.3
PRK10411240 DNA-binding transcriptional activator FucR; Provis 97.16
PRK10681252 DNA-binding transcriptional repressor DeoR; Provis 96.64
PLN02384264 ribose-5-phosphate isomerase 96.22
COG1349253 GlpR Transcriptional regulators of sugar metabolis 96.16
PRK13978228 ribose-5-phosphate isomerase A; Provisional 95.44
COG0120227 RpiA Ribose 5-phosphate isomerase [Carbohydrate tr 95.36
COG0426388 FpaA Uncharacterized flavoproteins [Energy product 88.17
TIGR01437363 selA_rel uncharacterized pyridoxal phosphate-depen 87.8
KOG0259 447 consensus Tyrosine aminotransferase [Amino acid tr 85.71
PRK10886196 DnaA initiator-associating protein DiaA; Provision 85.07
KOG3075261 consensus Ribose 5-phosphate isomerase [Carbohydra 84.61
PRK02947246 hypothetical protein; Provisional 84.49
TIGR00474 454 selA seryl-tRNA(sec) selenium transferase. In bact 84.41
cd05005179 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI 82.62
TIGR03127179 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of 82.41
PF04016147 DUF364: Domain of unknown function (DUF364); Inter 81.76
PRK07810 403 O-succinylhomoserine sulfhydrylase; Provisional 81.53
PF1008797 DUF2325: Uncharacterized protein conserved in bact 81.23
PF02254116 TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg 80.72
>KOG1465 consensus Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=3.4e-85  Score=617.92  Aligned_cols=347  Identities=47%  Similarity=0.739  Sum_probs=314.7

Q ss_pred             hHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Q 045642            4 IQALVSDLPSKLRKRRVQGSYETARLTAELLRAVILQHKEPTASGAASLIEAVRRVGEQLIAANPVELAVGNIVRHVLHI   83 (406)
Q Consensus         4 ~~~~i~~l~~~l~~~~i~Gs~~~A~~t~~~lr~~v~~~~~~~~~~~~~L~~~i~~~g~~L~~a~P~~~~i~Nivrrvl~~   83 (406)
                      .+..+.+|+.+||+++++||+++|++|+++||++|.+   .+|+++++|++.||..|+.|.+|+|+|+++||++||||++
T Consensus         7 ~~~~i~~fI~~lk~r~v~gS~aiA~eTl~llr~iIs~---~rw~~~n~Li~~vr~~g~~L~~A~psE~~~gNiirrIlkl   83 (353)
T KOG1465|consen    7 TEDEISEFIAALKKRLVRGSYAIAIETLNLLRQIISR---ERWSTANDLIESVRDVGKKLHAAQPSELSCGNIIRRILKL   83 (353)
T ss_pred             hhhHHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHh---hCcccHHHHHHHHHHHHHHhhhcCCchhhhhHHHHHHHHH
Confidence            4567999999999999999999999999999999999   9999999999999999999999999999999999999999


Q ss_pred             HHhhccCCCcccccccccccccchhhhhhhcccccCcccccCCCCCCchhhhhhhcCCCCCccccCCCccccccCcccch
Q 045642           84 IREEDLSPLTDIVGELKLSAEDDVEDIAEDENSQKSSATTDGCLLKPPLLLAVFEHLPDSAPACQTFSSENIFAGKADKS  163 (406)
Q Consensus        84 Iree~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~  163 (406)
                      ||||+.+.+.+.        .+|                   ...+..||++||+..+.....+..          ....
T Consensus        84 iReE~~~l~~~~--------~s~-------------------~s~~~~Sl~kLl~~~~e~~~~~~~----------S~~~  126 (353)
T KOG1465|consen   84 IREEVLELTGGA--------TSD-------------------ESSPSESLHKLLQSTEESHTNKKL----------SSAD  126 (353)
T ss_pred             HHHHHHHHhccC--------CCC-------------------CCchHHHHHHHHhCCCcccccccc----------cccc
Confidence            999987655431        011                   112456999999986543211111          1112


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHH
Q 045642          164 AKKLKSELIKAVNELIEDINTCREGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILA  243 (406)
Q Consensus       164 ~~~~k~~l~~~i~~~~~e~~~~~~~I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a  243 (406)
                      ..++|+.++++|+++++|++.++++|+.+|.++|+++++|||+|.|+||++||++|.++||+|+|||+|+.|.++|+.||
T Consensus       127 ~~~lr~~~i~~I~eli~Eie~~~E~Ia~Qa~ehihsnEviLT~g~SrTV~~FL~~A~kk~Rkf~viVaE~~p~~qgH~~A  206 (353)
T KOG1465|consen  127 AKKLRKDLIEGIKELITEIEGSRENIAVQAIEHIHSNEVILTLGSSRTVENFLKHAAKKGRKFRVIVAEGAPNNQGHELA  206 (353)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhccCceEEecCccHHHHHHHHHHHhccCceEEEEeecCCcccchHhh
Confidence            36799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEecCCccccccCCCCccc
Q 045642          244 KELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELCSLYPHNLEV  323 (406)
Q Consensus       244 ~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~~~~~~~d~~~  323 (406)
                      +.|+++||++|+|+|++++++|+||+|||+|+++|++|||+...+|++++|++||+|.+|||||++.||+||.||.+++.
T Consensus       207 k~la~~giettVI~daaVfA~MsrVnKVIigt~avl~NGgl~~~~G~~~vAlaAk~h~vPv~VlAp~yKLsPlyp~~~ds  286 (353)
T KOG1465|consen  207 KPLAQAGIETTVIPDAAVFAMMSRVNKVIIGTHAVLANGGLRAPSGVHTVALAAKHHSVPVIVLAPMYKLSPLYPTNPDS  286 (353)
T ss_pred             HHHHHcCCeeEEeccHHHHHHhhhcceEEEEeeeEecCCCeeccchHHHHHHHHHhcCCcEEEecchhhcCCCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cccccCCcccccccCCcccccccCcCCCCCcccccCCcceecCCCCccEEEeCCCCCCChhHHHHHHHhcCCCCCCC
Q 045642          324 LLNEMRCPSELLNFEEFSDCIDYGIASSSSLLHVVNPAFDYVPPELIRLFVTDIGGYSPSYIYRLIADYYSSEDLPP  400 (406)
Q Consensus       324 i~~e~~~p~ev~~~~~~~~~~~~~~~~~~~~v~v~np~fD~tPp~lIt~iITE~G~~~Ps~v~~ll~e~y~~~d~~l  400 (406)
                       ++++++|+++++|.+. +        ....+++.||+|||+||||||+|||+.|.+.||+|||++.||||++|+.+
T Consensus       287 -~~~f~s~~~il~~~e~-~--------~~~~~~v~nP~fDyvppeLVtLFIsNtgg~~PSyvyRl~~d~Yh~~D~~l  353 (353)
T KOG1465|consen  287 -FHEFRSPSEILPFSEG-D--------PAGRVDVLNPAFDYVPPELVTLFISNTGGVAPSYVYRLMEDLYHPQDIAL  353 (353)
T ss_pred             -HHhcCCcccccCcccc-C--------cccceeecccccccCChhheeEEEecCCCCChHHHHHHHHHhcChhhccC
Confidence             8899999999988651 1        12348999999999999999999999999999999999999999999764

>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family Back     alignment and domain information
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins Back     alignment and domain information
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit Back     alignment and domain information
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed Back     alignment and domain information
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated Back     alignment and domain information
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase Back     alignment and domain information
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>PRK08334 translation initiation factor IF-2B subunit beta; Validated Back     alignment and domain information
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>KOG1468 consensus Predicted translation initiation factor related to eIF-2B alpha/beta/delta subunits (CIG2/IDI2) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00021 rpiA ribose 5-phosphate isomerase Back     alignment and domain information
>PRK00702 ribose-5-phosphate isomerase A; Provisional Back     alignment and domain information
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional Back     alignment and domain information
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway Back     alignment and domain information
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional Back     alignment and domain information
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional Back     alignment and domain information
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism Back     alignment and domain information
>PRK13509 transcriptional repressor UlaR; Provisional Back     alignment and domain information
>PRK10411 DNA-binding transcriptional activator FucR; Provisional Back     alignment and domain information
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional Back     alignment and domain information
>PLN02384 ribose-5-phosphate isomerase Back     alignment and domain information
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK13978 ribose-5-phosphate isomerase A; Provisional Back     alignment and domain information
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion] Back     alignment and domain information
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme Back     alignment and domain information
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10886 DnaA initiator-associating protein DiaA; Provisional Back     alignment and domain information
>KOG3075 consensus Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK02947 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00474 selA seryl-tRNA(sec) selenium transferase Back     alignment and domain information
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI) Back     alignment and domain information
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase Back     alignment and domain information
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function Back     alignment and domain information
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional Back     alignment and domain information
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query406
3vm6_A338 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 1e-22
3a11_A338 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 3e-22
3a9c_B326 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 1e-21
3a9c_A321 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 3e-21
3a9c_F323 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 3e-21
3a9c_E322 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 3e-21
3ecs_A315 Crystal Structure Of Human Eif2b Alpha Length = 315 2e-20
1vb5_A276 Crystal Structure Analysis Of The Pyrococcus Horiko 3e-16
2yrf_A374 Crystal Structure Of 5-Methylthioribose 1-Phosphate 3e-12
1t9k_A347 X-ray Crystal Structure Of Aif-2b Alpha Subunit-rel 6e-12
1t5o_A351 Crystal Structure Of The Translation Initiation Fac 8e-09
>pdb|3VM6|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase From Thermococcus Kodakarensis Kod1 In Complex With Alpha-D-Ribose-1,5- Bisphosphate Length = 338 Back     alignment and structure 
Iteration: 1

 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 111/220 (50%), Gaps = 13/220 (5%)
Query: 165 KKLKSELIKAVNELIEDINTCREGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKR 224
           ++L+  +I A  E I +     E I E   + I   +VI+T  HSK     +  A E+ +
Sbjct: 107 EQLRFVIINAAKEFIHNSEKALERIGEFGAKRIEDGDVIMTHSHSKAAISVMKTAWEQGK 166
Query: 225 SFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANGGV 284
             +V + +  PK++G I AKEL   G+  I + DSA    +   + V++G  ++  NG V
Sbjct: 167 DIKVIVTETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAV 226
Query: 285 IAPAGLHVLALAAKKHDVPFVVVASTHELCSLYPHNL--EVLLNEMRCPSELLNFEEFSD 342
           I   G  ++AL AK+H V  ++ A T++    +P  +  +++  EMR P+E++  +E   
Sbjct: 227 INKIGTALIALTAKEHRVWTMIAAETYK---FHPETMLGQLVEIEMRDPTEVIPEDELK- 282
Query: 343 CIDYGIASSSSLLHVVNPAFDYVPPELIRLFVTDIGGYSP 382
                  +    + V NPAFD  PPE + + +T+ G   P
Sbjct: 283 -------TWPKNIEVWNPAFDVTPPEYVDVIITERGIIPP 315
>pdb|3A11|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase From Thermococcus Kodakaraensis Kod1 Length = 338 Back     alignment and structure
>pdb|3ECS|A Chain A, Crystal Structure Of Human Eif2b Alpha Length = 315 Back     alignment and structure
>pdb|1VB5|A Chain A, Crystal Structure Analysis Of The Pyrococcus Horikoshii Ot3 Translation Initiation Factor Eif-2b Length = 276 Back     alignment and structure
>pdb|2YRF|A Chain A, Crystal Structure Of 5-Methylthioribose 1-Phosphate Isomerase From Bacillus Subtilis Complexed With Sulfate Ion Length = 374 Back     alignment and structure
>pdb|1T9K|A Chain A, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related Translation Initiation Factor [thermotoga Maritima] Length = 347 Back     alignment and structure
>pdb|1T5O|A Chain A, Crystal Structure Of The Translation Initiation Factor Eif-2b, Subunit Delta, From A. Fulgidus Length = 351 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query406
3ecs_A315 Translation initiation factor EIF-2B subunit alpha 2e-76
1vb5_A276 Translation initiation factor EIF-2B; 2.20A {Pyroc 2e-33
3a11_A338 Translation initiation factor EIF-2B, delta subun; 5e-31
1t9k_A347 Probable methylthioribose-1-phosphate isomerase; s 2e-21
2yvk_A374 Methylthioribose-1-phosphate isomerase; methionine 3e-21
1t5o_A351 EIF2BD, translation initiation factor EIF2B, subun 1e-19
2a0u_A383 Initiation factor 2B; SGPP, structural genomics, P 1e-14
1w2w_B191 5-methylthioribose-1-phosphate isomerase; EIF2B, m 6e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens} Length = 315 Back     alignment and structure
 Score =  238 bits (610), Expect = 2e-76
 Identities = 66/252 (26%), Positives = 111/252 (44%), Gaps = 11/252 (4%)

Query: 146 ACQTFSSENIFAGKADKSAKKLKSELIKAVNELIEDINTCREGIAEQAMELIHQNEVILT 205
             + F      A        K K  +I+     +  I+  R  IA+     I     ILT
Sbjct: 68  GGELFLRFISLASLEYSDYSKCKKIMIERGELFLRRISLSRNKIADLCHTFIKDGATILT 127

Query: 206 LGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMI 265
             +S+ V   L AA   K+ F V++ +  P   G  +AK L    +   V+ D+AV  ++
Sbjct: 128 HAYSRVVLRVLEAAVAAKKRFSVYVTESQPDLSGKKMAKALCHLNVPVTVVLDAAVGYIM 187

Query: 266 SRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELCSLYPHNLEVLL 325
            + ++VIVG   V+ NGG+I   G + +A+ AK  + PF VVA + +   L+P N + + 
Sbjct: 188 EKADLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFPLNQQDVP 247

Query: 326 NEMRCPSELLNFEEFSDCIDYGIASSSSLLHVVNPAFDYVPPELIRLFVTDIGGYSPSYI 385
           ++ +  ++ L   +           +   L   +P  DY  P LI L  TD+G  +PS +
Sbjct: 248 DKFKYKADTLKVAQ-----------TGQDLKEEHPWVDYTAPSLITLLFTDLGVLTPSAV 296

Query: 386 YRLIADYYSSED 397
              +   Y +  
Sbjct: 297 SDELIKLYLAAA 308
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5 Length = 276 Back     alignment and structure
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A* Length = 338 Back     alignment and structure
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5 Length = 347 Back     alignment and structure
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A* Length = 374 Back     alignment and structure
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5 Length = 351 Back     alignment and structure
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5 Length = 383 Back     alignment and structure
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5 Length = 191 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query406
3a11_A338 Translation initiation factor EIF-2B, delta subun; 100.0
2yvk_A374 Methylthioribose-1-phosphate isomerase; methionine 100.0
1t5o_A351 EIF2BD, translation initiation factor EIF2B, subun 100.0
1t9k_A347 Probable methylthioribose-1-phosphate isomerase; s 100.0
2a0u_A383 Initiation factor 2B; SGPP, structural genomics, P 100.0
3ecs_A315 Translation initiation factor EIF-2B subunit alpha 100.0
1vb5_A276 Translation initiation factor EIF-2B; 2.20A {Pyroc 100.0
1w2w_B191 5-methylthioribose-1-phosphate isomerase; EIF2B, m 100.0
1w2w_A211 5-methylthioribose-1-phosphate isomerase; EIF2B, m 99.59
1uj6_A227 Ribose 5-phosphate isomerase; enzyme-inhibitor com 98.37
3kwm_A224 Ribose-5-phosphate isomerase A; structural genomic 98.07
2f8m_A244 Ribose 5-phosphate isomerase; structural genomics, 98.05
1m0s_A219 Ribose-5-phosphate isomerase A; D-ribose 5-phospha 97.95
3hhe_A255 Ribose-5-phosphate isomerase A; niaid, ssgcid, dec 97.95
1lk5_A229 D-ribose-5-phosphate isomerase; alpha/beta structu 97.92
3l7o_A225 Ribose-5-phosphate isomerase A; RPIA; 1.70A {Strep 97.85
1o8b_A219 Ribose 5-phosphate isomerase; RPIA, PSI, protein S 97.75
2pjm_A226 Ribose-5-phosphate isomerase A; 3D-structure, stru 97.7
1xtz_A264 Ribose-5-phosphate isomerase; yeast; 2.10A {Saccha 97.67
3uw1_A239 Ribose-5-phosphate isomerase A; ssgcid, seattle st 97.49
4gmk_A228 Ribose-5-phosphate isomerase A; D-ribose-5-phospha 94.65
3ixq_A226 Ribose-5-phosphate isomerase A; structural genomic 91.02
3e8x_A236 Putative NAD-dependent epimerase/dehydratase; stru 86.97
3i6i_A 346 Putative leucoanthocyanidin reductase 1; rossmann 86.22
1x92_A199 APC5045, phosphoheptose isomerase; midwest centre 85.09
4dq6_A391 Putative pyridoxal phosphate-dependent transferas; 83.75
2yva_A196 DNAA initiator-associating protein DIAA; intermole 83.75
1vim_A200 Hypothetical protein AF1796; structural genomics, 83.66
1m3s_A186 Hypothetical protein YCKF; structural genomics, PS 83.04
2nvv_A 506 Acetyl-COA hydrolase/transferase family protein; a 82.87
2g39_A 497 Acetyl-COA hydrolase; coenzyme A transferase, stru 82.57
3ic5_A118 Putative saccharopine dehydrogenase; structural ge 82.41
4gx0_A565 TRKA domain protein; membrane protein, ION channel 81.96
3s3t_A146 Nucleotide-binding protein, universal stress PROT 81.8
3sho_A187 Transcriptional regulator, RPIR family; structural 80.97
1jeo_A180 MJ1247, hypothetical protein MJ1247; RUMP pathway, 80.29
3rrl_A235 Succinyl-COA:3-ketoacid-coenzyme A transferase SU; 80.13
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A* Back     alignment and structure
Probab=100.00  E-value=4.7e-73  Score=562.82  Aligned_cols=311  Identities=25%  Similarity=0.351  Sum_probs=288.4

Q ss_pred             HHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Q 045642            6 ALVSDLPSKLRKRRVQGSYETARLTAELLRAVILQHKEPTASGAASLIEAVRRVGEQLIAANPVELAVGNIVRHVLHIIR   85 (406)
Q Consensus         6 ~~i~~l~~~l~~~~i~Gs~~~A~~t~~~lr~~v~~~~~~~~~~~~~L~~~i~~~g~~L~~a~P~~~~i~Nivrrvl~~Ir   85 (406)
                      ..+++++..||+++++||.+++++++..|...+..   .+|.+.++|++.|+..+++|.++||++++|+|++||+++.|+
T Consensus        21 ~~~~~~~~aI~~m~VrGApai~iaaa~~l~~~~~~---~~~~~~~~l~~~l~~~~~~L~~aRPtav~L~~a~~~~~~~i~   97 (338)
T 3a11_A           21 KEVLEIAEKIKNMEIRGAGKIARSAAYALQLQAEK---SKATNVDEFWKEMKQAAKILFETRPTAVSLPNALRYVMHRGK   97 (338)
T ss_dssp             SHHHHHHHHHHTCSSCSHHHHHHHHHHHHHHHHHH---CCCCSHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhCcEeCcHHHHHHHHHHHHHHHHh---ccCCCHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence            46889999999999999999999999999999999   889999999999999999999999999999999999999998


Q ss_pred             hhccCCCcccccccccccccchhhhhhhcccccCcccccCCCCCCchhhhhhhcCCCCCccccCCCccccccCcccchHH
Q 045642           86 EEDLSPLTDIVGELKLSAEDDVEDIAEDENSQKSSATTDGCLLKPPLLLAVFEHLPDSAPACQTFSSENIFAGKADKSAK  165 (406)
Q Consensus        86 ee~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~~  165 (406)
                      ++...                                                                      ..+.+
T Consensus        98 ~~~~~----------------------------------------------------------------------~~~~~  107 (338)
T 3a11_A           98 IAYSS----------------------------------------------------------------------GADLE  107 (338)
T ss_dssp             HHHHT----------------------------------------------------------------------TCCHH
T ss_pred             Hhccc----------------------------------------------------------------------CCCHH
Confidence            75210                                                                      00136


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHH
Q 045642          166 KLKSELIKAVNELIEDINTCREGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKE  245 (406)
Q Consensus       166 ~~k~~l~~~i~~~~~e~~~~~~~I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~  245 (406)
                      ++|+.+++.+++|++|...++++|+++++++|++|++|||||+|+||+.+|+.|+++|++|+|||+||||.+||+++|++
T Consensus       108 ~~k~~l~~~a~~~~~e~~~~~~~I~~~g~~~I~~g~~ILTh~~S~tvl~~l~~A~~~gk~~~V~v~EtRP~~qGrltA~e  187 (338)
T 3a11_A          108 QLRFVIINAAKEFIHNSEKALERIGEFGAKRIEDGDVIMTHCHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKE  187 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCHHHHHHHHHHHHTTCCCEEEEECCTTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCcHHHHHHHHHHHHCCCeEEEEEeCCCCchhhHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCceEEEcchHHHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEecCCccccccCCCCccccc
Q 045642          246 LDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELCSLYPHNLEVLL  325 (406)
Q Consensus       246 L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~~~~~~~d~~~i~  325 (406)
                      |.+.||+||+|+|++++++|++||+||+|||+|++||+++||+|||++|++||+|+|||||+||+|||++.++.+.. ++
T Consensus       188 L~~~GI~vtlI~Dsa~~~~M~~Vd~VivGAd~V~anG~v~NKiGT~~lAl~Ak~~~vPfyV~a~~~k~d~~~~~g~~-i~  266 (338)
T 3a11_A          188 LASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAAETYKFHPETMLGQL-VE  266 (338)
T ss_dssp             HHHTTCCEEEECGGGTTTTGGGCSEEEECCSEECTTSCEEEETTHHHHHHHHHHTTCEEEEECCGGGBCSCCSSSSC-CC
T ss_pred             HHhCCCCEEEEehHHHHHHHHhCCEEEECccEEecCCCEeecccHHHHHHHHHHcCCCEEEecccceecccCCCCcc-cc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998754 59


Q ss_pred             cccCCcccccccCCcccccccCcCCCCCcccccCCcceecCCCCccEEEeCCCCCCChhHHHHHHHhcCCCCC
Q 045642          326 NEMRCPSELLNFEEFSDCIDYGIASSSSLLHVVNPAFDYVPPELIRLFVTDIGGYSPSYIYRLIADYYSSEDL  398 (406)
Q Consensus       326 ~e~~~p~ev~~~~~~~~~~~~~~~~~~~~v~v~np~fD~tPp~lIt~iITE~G~~~Ps~v~~ll~e~y~~~d~  398 (406)
                      +|+++|.|++.+ +....     |  .++++++||+||+|||+|||+||||.|+++|++|+++|++||+++|+
T Consensus       267 iE~r~~~ev~~~-g~~~~-----w--~~~v~v~NPaFDvTP~~lIt~iITE~Gv~~p~~v~~~L~e~y~~~~~  331 (338)
T 3a11_A          267 IEMRDPTEVIPE-DELKT-----W--PKNIEVWNPAFDVTPPEYVDVIITERGIIPPYAAIDILREEFGWALK  331 (338)
T ss_dssp             CCBCCGGGTSCH-HHHTT-----S--CTTEEECCBSEEEECGGGCSEEEETTEEECGGGHHHHHHHHHCCCSS
T ss_pred             cccCCHHHcccc-ccccc-----C--CCCceecCcceeccCHHHcCEEecCCCccCchhHHHHHHHHhCcccc
Confidence            999999999865 21110     0  23489999999999999999999999999999999999999999886
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A* Back     alignment and structure
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5 Back     alignment and structure
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5 Back     alignment and structure
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5 Back     alignment and structure
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens} Back     alignment and structure
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5 Back     alignment and structure
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5 Back     alignment and structure
>1w2w_A 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5 Back     alignment and structure
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A* Back     alignment and structure
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp} Back     alignment and structure
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum} Back     alignment and structure
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1 Back     alignment and structure
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae} Back     alignment and structure
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A* Back     alignment and structure
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans} Back     alignment and structure
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A* Back     alignment and structure
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae} Back     alignment and structure
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics center for infectious DI isomerase, ribose isomerase; HET: R5P; 1.71A {Burkholderia thailandensis} PDB: 3u7j_A* Back     alignment and structure
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius} Back     alignment and structure
>3ixq_A Ribose-5-phosphate isomerase A; structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; HET: PGO; 1.78A {Methanocaldococcus jannaschii} Back     alignment and structure
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Back     alignment and structure
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* Back     alignment and structure
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A Back     alignment and structure
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* Back     alignment and structure
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli} Back     alignment and structure
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3 Back     alignment and structure
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A Back     alignment and structure
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis} Back     alignment and structure
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2 Back     alignment and structure
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} Back     alignment and structure
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* Back     alignment and structure
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0 Back     alignment and structure
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus} Back     alignment and structure
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3 Back     alignment and structure
>3rrl_A Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 406
d1vb5a_274 c.124.1.5 (A:) Putative eIF-2B subunit 2-like prot 3e-42
d1t9ka_340 c.124.1.5 (A:) Probable methylthioribose-1-phospha 2e-30
d2a0ua1374 c.124.1.5 (A:10-383) Initiation factor 2b {Leishma 3e-30
g1w2w.1402 c.124.1.5 (A:,B:) Putative methylthioribose-1-phos 1e-27
d1t5oa_340 c.124.1.5 (A:) Putative eIF-2B delta-subunit {Arch 2e-25
>d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein PH0440 {Pyrococcus horikoshii [TaxId: 53953]} Length = 274 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: IF2B-like
domain: Putative eIF-2B subunit 2-like protein PH0440
species: Pyrococcus horikoshii [TaxId: 53953]

 Score =  147 bits (372), Expect = 3e-42
 Identities = 56/222 (25%), Positives = 99/222 (44%), Gaps = 21/222 (9%)

Query: 163 SAKKLKSELIKAVNELIEDINTCREGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEK 222
                +  L     E +  +   +  +A    +LI   +VI+T   S  V E +  AKE+
Sbjct: 72  PVTNRRDILKSRALEFLRRMEEAKRELASIGAQLIDDGDVIITHSFSSTVLEIIRTAKER 131

Query: 223 KRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANG 282
           K+ F+V + + +P +EG  LA+EL+  G++  VITD+ +       ++ IVG   +  +G
Sbjct: 132 KKRFKVILTESSPDYEGLHLARELEFSGIEFEVITDAQMGLFCREASIAIVGADMITKDG 191

Query: 283 GVIAPAGLHVLALAAKKHDVPFVVVASTHELCSLYPHNLEVLLNEMRCPSELLNFEEFSD 342
            V+  AG ++LALA  ++ +PF V A T++         +V+L E       +       
Sbjct: 192 YVVNKAGTYLLALACHENAIPFYVAAETYKFHPTLKSG-DVMLMERDLIRGNVR------ 244

Query: 343 CIDYGIASSSSLLHVVNPAFDYVPPELIRLFVTDIGGYSPSY 384
                         + N  FD  P + +R  +T++G   P  
Sbjct: 245 --------------IRNVLFDVTPWKYVRGIITELGIVIPPR 272
>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate isomerase TM0911 {Thermotoga maritima [TaxId: 2336]} Length = 340 Back     information, alignment and structure
>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major [TaxId: 5664]} Length = 374 Back     information, alignment and structure
>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 340 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query406
d1t5oa_340 Putative eIF-2B delta-subunit {Archaeon Archaeoglo 100.0
d1t9ka_340 Probable methylthioribose-1-phosphate isomerase TM 100.0
d1vb5a_274 Putative eIF-2B subunit 2-like protein PH0440 {Pyr 100.0
d2a0ua1374 Initiation factor 2b {Leishmania major [TaxId: 566 100.0
g1w2w.1402 Putative methylthioribose-1-phosphate isomerase Yp 100.0
d1m0sa1147 D-ribose-5-phosphate isomerase (RpiA), catalytic d 97.66
d1uj4a1151 D-ribose-5-phosphate isomerase (RpiA), catalytic d 97.52
d1lk5a1149 D-ribose-5-phosphate isomerase (RpiA), catalytic d 97.3
d1m3sa_186 Hypothetical protein YckF {Bacillus subtilis [TaxI 84.27
d1o8ba1124 D-ribose-5-phosphate isomerase (RpiA), catalytic d 82.67
>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: IF2B-like
domain: Putative eIF-2B delta-subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=2.7e-62  Score=484.44  Aligned_cols=296  Identities=22%  Similarity=0.303  Sum_probs=265.1

Q ss_pred             HHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHh
Q 045642            7 LVSDLPSKLRKRRVQGSYETARLTAELLRAVILQHKEPTASGAASLIEAVRRVGEQLIAANPVELAVGNIVRHVLHIIRE   86 (406)
Q Consensus         7 ~i~~l~~~l~~~~i~Gs~~~A~~t~~~lr~~v~~~~~~~~~~~~~L~~~i~~~g~~L~~a~P~~~~i~Nivrrvl~~Ire   86 (406)
                      .+++.+..||+++|+|+..++.+++..|...+..   .+..+.+++.+.++..+++|..+||++++|.|.++|+++.+.+
T Consensus        30 ~~~~v~~AI~~M~VRGAPaIgvaaa~glala~~~---~~~~~~~e~~~~L~~a~~~L~~aRPTAVnL~nAl~r~~~~~~~  106 (340)
T d1t5oa_          30 NVEELADAIKKLAVRGAPALEAAGAYGIALAARE---REFADVDELKEHLKKAADFLASTRPTAVNLFVGIERALNAALK  106 (340)
T ss_dssp             SHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHTTS---SCCSCHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHhHcCcccCcHHHHHHHHHHHHHHHHh---hhcCCchhhHHHHHHHHHHHHhcCccchhHHHHHHHHhhhhhc
Confidence            4678899999999999999999999999877777   7889999999999999999999999999999999999765421


Q ss_pred             hccCCCcccccccccccccchhhhhhhcccccCcccccCCCCCCchhhhhhhcCCCCCccccCCCccccccCcccchHHH
Q 045642           87 EDLSPLTDIVGELKLSAEDDVEDIAEDENSQKSSATTDGCLLKPPLLLAVFEHLPDSAPACQTFSSENIFAGKADKSAKK  166 (406)
Q Consensus        87 e~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  166 (406)
                      .                                                                          .+.++
T Consensus       107 ~--------------------------------------------------------------------------~s~~~  112 (340)
T d1t5oa_         107 G--------------------------------------------------------------------------ESVEE  112 (340)
T ss_dssp             C--------------------------------------------------------------------------SSHHH
T ss_pred             c--------------------------------------------------------------------------cchHH
Confidence            0                                                                          01267


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcEEEeccChH--------HHHHHHHHHHHcCCceEEEEecCCCCcc
Q 045642          167 LKSELIKAVNELIEDINTCREGIAEQAMELIHQNEVILTLGHSK--------FVKEFLCAAKEKKRSFEVFIADGAPKFE  238 (406)
Q Consensus       167 ~k~~l~~~i~~~~~e~~~~~~~I~~~a~~~I~~g~~ILT~g~S~--------tV~~~L~~A~~~~~~f~ViV~EsrP~~e  238 (406)
                      +|+.+++.+++++++...++++|+++++++|++|++|||||+|+        |++.+|+.|+++|++|+|||+||||.+|
T Consensus       113 ~k~~ll~~a~~i~~e~~~a~~~I~~~g~~~I~dg~~ILThcnsg~lat~~~gta~~~i~~a~~~gk~~~V~v~EsrP~~q  192 (340)
T d1t5oa_         113 VKELALREAEKLAEEDVERNRKMGEYGAELLEDGDVVLTYCNAGRLATVDWGTALGVVRSAVEQGKEIRVIACETRPLNQ  192 (340)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSSSSSSCSHHHHHHHHHHTTCCCEEEEECCTTTTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEecCCchhhhhhhhhHHHHHHHhhhCCccceEEEEeccCccC
Confidence            89999999999999999999999999999999999999999986        7899999999999999999999999999


Q ss_pred             h-HHHHHHHHhCCCceEEEcchHHHHHhhc--CCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEecCCccccc
Q 045642          239 G-HILAKELDKKGLKAIVITDSAVFAMISR--VNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELCS  315 (406)
Q Consensus       239 G-~~~a~~L~~~GI~vt~I~Dsav~~~m~~--vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~~~  315 (406)
                      | +++|++|.+.||+||+|+|++++|+|++  ||+||+|||+|++|| ++||+|||++|++||+|+|||||+||+|||++
T Consensus       193 G~rl~a~~L~~~gi~~t~i~dsa~~~~m~~~~vd~VivGad~v~~nG-~~nkiGT~~~A~~Ak~~~vP~~V~~~~~k~~~  271 (340)
T d1t5oa_         193 GSRLTCWELMEDGIDVTLITDSMVGIVMQKGMVDKVIVGADRIVRDA-VFNKIGTYTVSVVAKHHNIPFYVAAPKATFDW  271 (340)
T ss_dssp             HHHTHHHHHHHTTCCEEEECGGGHHHHHHTTCCSEEEECCSEEETTE-EEEETTHHHHHHHHHHTTCCEEEECCGGGBCT
T ss_pred             chHHHHHHHHhcCCCcEEEechhHHHHhhccccceEeechheeehhc-ccccccHHHHHHHHHHhCCcEEEEeccccccc
Confidence            9 7899999999999999999999999998  999999999999998 89999999999999999999999999999986


Q ss_pred             cCCCCccccccccCCcccccccCCcccccccCcCCCCCcccccCCcceecCCCCccEEEeCCCCCCChh---HHHHHH
Q 045642          316 LYPHNLEVLLNEMRCPSELLNFEEFSDCIDYGIASSSSLLHVVNPAFDYVPPELIRLFVTDIGGYSPSY---IYRLIA  390 (406)
Q Consensus       316 ~~~~d~~~i~~e~~~p~ev~~~~~~~~~~~~~~~~~~~~v~v~np~fD~tPp~lIt~iITE~G~~~Ps~---v~~ll~  390 (406)
                      ...  ...+.+|.+++.|+..+++...        ...+++++||+||+|||+|||+||||.|+++|++   |..+++
T Consensus       272 ~~~--~~~i~ie~~~~~e~~~~~~~~~--------~~~~~~v~np~fD~tP~~lI~~iiTe~Gi~~P~~~~~~~~~l~  339 (340)
T d1t5oa_         272 ERT--AKDVVIEERPREELIFCGKRQI--------APLNVKVYNPAFDPTPLENVTALITEYGVIYPPYEVNVPKVLK  339 (340)
T ss_dssp             TCC--GGGCCCCBCCTHHHHEETTEEC--------SCTTCEECCBSEEEEEGGGCSEEEETTEEECSCHHHHHHHHTT
T ss_pred             cCC--ccccccccCCHHHhcccCCeee--------cCCCCCeeCcCccCCCHHHCCEEECCCCccCCCccccHHHHhc
Confidence            543  3446889999999987665221        1234899999999999999999999999998874   566553
>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate isomerase TM0911 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein PH0440 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1m0sa1 c.124.1.4 (A:1-126,A:199-219) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1uj4a1 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1lk5a1 c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1m3sa_ c.80.1.3 (A:) Hypothetical protein YckF {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1o8ba1 c.124.1.4 (A:23-126,A:199-218) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure