Citrus Sinensis ID: 045671

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------63

MAPSTIRKAIGAVKDQTSISLAKVAGNIAPDLEVLVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSKTHDWIVAVKALMLVHKLLLDGHLLFEDEIVYSTRRGMRLLNMSDFRDEAHSNSWDHGGFVRFYAMYLDEKVEFVVYEKKMRGGEGKVEEREDRFRDDFDRGMELRSQSYGDVSESVRREERREATPMREMRPERVLARLNQLLRILDKVLACRPTGAAKNSRLVLVALYLVVKDSFGLYVDICEALGVLLDKFTEMEYADCVRGFEAYVSAAKMIDELVGFYGWCKDIGIARSSEFPEVQRITDKLLGTLDGFLKEMANRPKNPERIREEKLPPKQEPEPDMNEVKALPAPENSSPPPPPPPKPQQPPKPQPQQVTDDLVNLKDDATSADEQGNKLALALFSGPPTNTNGSWEAFPSNGQPEVTSAWQTPAAESGRADWESALVETAGNLSKQKAAYAGGFDSLVLNGMYDQGAVRQHVSTTQLSGGSASSVTLPGPGKSATPVLALPAPDGTVQTVGNNDPFAASLTVPPPSYVQMAEMERKQQFLVQEQQLWQQYGRDGMQGQVALAKIAGGSGYYGPNPQSMMPYGMPQVTGMGQPGPGGYYYSPY

ccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHcccccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcHHHHccccccccccccccccccccccccccccccccccccccccccHHHHcccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccc

cccHHHHHHHHHccccccEEEEEcccHHHHHHcEEEEEcccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccHEEEEEcccccccccccccccccccccccccccccccccccccEEEEEEcccccHHHHHHccccccHHHHcccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcccccccccccccccccccccccccccccccccccccc

MAPSTIRKAIGAVKDQTSISLAKVAGNIAPDLEVLVVKAtshddepaddkYVREIVSLMSYSRGYVSACIATISKRLSKTHDWIVAVKALMLVHKLLLDGHLLFEDEIVYSTRRGMRllnmsdfrdeahsnswdhggFVRFYAMYLDEKVEFVVYEKkmrggegkveeredrfrddfdrgmelrsqsygdvsesvrreerreatpmremrPERVLARLNQLLRILDKVLacrptgaaknSRLVLVALYLVVKDSFGLYVDICEALGVLLdkftemeyADCVRGFEAYVSAAKMIDELVGFYGWCKDigiarssefpevqRITDKLLGTLDGFLKEManrpknperireeklppkqepepdmnevkalpapensspppppppkpqqppkpqpqqvtddlvnlkddatsadEQGNKLALALfsgpptntngsweafpsngqpevtsawqtpaaesgrADWESALVETAGNLskqkaayaggfDSLVLNGmydqgavrqhvsttqlsggsassvtlpgpgksatpvlalpapdgtvqtvgnndpfaasltvpppsyvqMAEMERKQQFLVQEQQLWQQYGRDGMQGQVALAKIaggsgyygpnpqsmmpygmpqvtgmgqpgpggyyyspy

mapstirkaigavkdqtsiSLAKVAGNIAPDLEVLVVKatshddepaddkYVREIVSLMSYSRGYVSACIATISKRLSKTHDWIVAVKALMLVHKLLLDGHLLFEDEIVYSTRRGMRLLNMSDFRDEAHSNSWDHGGFVRFYAMYLDEKVEFVVYEkkmrggegkveeredrfrddfdrgmelrsqsygdvsesvrreerreatpmremrperVLARLNQLLRILDKVLAcrptgaaknsrLVLVALYLVVKDSFGLYVDICEALGVLLDKFTEMEYADCVRGFEAYVSAAKMIDELVGFYGWCKDIGIArssefpevqRITDKLLGTLDGFLKemanrpknperireeklppkqepepdmNEVKALPAPENSSPPPPPPPKPQQPPKPQPQQVTDDLVNLKDDATSADEQGNKLALALFSGPPTNTNGSWEAFPSNGQPEVTSAWQTPAAESGRADWESALVETAGNLSKQKAAYAGGFDSLVLNGMYDQGAVRQHVSTTQLSGGSASSVTLPGPGKSATPVLALPAPDGTVQTVGNNDPFAASLTVPPPSYVQMAEMERKQQFLVQEQQLWQQYGRDGMQGQVALAKIAGGSGYYGPNPQSMMPYGMPQVTGMGQPGPGGYYYSPY

MAPSTIRKAIGAVKDQTSISLAKVAGNIAPDLEVLVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSKTHDWIVAVKAlmlvhkllldghllFEDEIVYSTRRGMRLLNMSDFRDEAHSNSWDHGGFVRFYAMYLDEKVEFVVYEKKMRGGEGKVeeredrfrddfdrGMELRSQSYGDvsesvrreerreATPMREMRPERVLARLNQLLRILDKVLACRPTGAAKNSRLVLVALYLVVKDSFGLYVDICEALGVLLDKFTEMEYADCVRGFEAYVSAAKMIDELVGFYGWCKDIGIARSSEFPEVQRITDKLLGTLDGFLKEMANRPKNPERIReeklppkqepepDMNEVKALPAPENSSpppppppkpqqppkpqpqqVTDDLVNLKDDATSADEQGNKLALALFSGPPTNTNGSWEAFPSNGQPEVTSAWQTPAAESGRADWESALVETAGNLSKQKAAYAGGFDSLVLNGMYDQGAVRQHVSTTQLSGGSASSVTLPGPGKSATPVLALPAPDGTVQTVGNNDPFAASLTVPPPSYVQMAEMERKqqflvqeqqlwqqYGRDGMQGQVALAKIAGGSGYYGPNPQSMMPYgmpqvtgmgqpgpggyyyspy

************V**QTSISLAKVAGNIAPDLEVLVVKATS******DDKYVREIVSLMSYSRGYVSACIATISKRLSKTHDWIVAVKALMLVHKLLLDGHLLFEDEIVYSTRRGMRLLNMSDFRDEAHSNSWDHGGFVRFYAMYLDEKVEFVVYEK********************************************************VLARLNQLLRILDKVLACRPTGAAKNSRLVLVALYLVVKDSFGLYVDICEALGVLLDKFTEMEYADCVRGFEAYVSAAKMIDELVGFYGWCKDIGIARSSEFPEVQRITDKLLGTLDGFL********************************************************************************************************************************LV*****L*KQKAAYAGGFDSLVLNGMYDQGAV*********************************************************************QFLVQEQQLWQQYGRDGMQGQVALAKIAGGSGYY*******************************

*****IR**IGAVKDQTSISLAKVAGNIAPDLEVLVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSKTHDWIVAVKALMLVHKLLLDGHLLFEDEIVYSTRRGMRLLNMSDFRDEAHSNSWDHGGFVRFYAMYLDEKVEFVVYEKK*************RFRDDFDRGMELRSQSYGDVSES***********MREMRPERVLARLNQLLRILDKVLACRPTGAAKNSRLVLVALYLVVKDSFGLYVDICEALGVLLDKFTEMEYADCVRGFEAYVSAAKMIDELVGFYGWCKDIGIARSSEFPEVQRITDKLLG*************************************************************************************************************************************************************************************************************************************************************************************************************

MAPSTIRKAIGAVKDQTSISLAKVAGNIAPDLEVLVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSKTHDWIVAVKALMLVHKLLLDGHLLFEDEIVYSTRRGMRLLNMSDFRDEAHSNSWDHGGFVRFYAMYLDEKVEFVVYEKKM************RFRDDFDRGMELRS**********************EMRPERVLARLNQLLRILDKVLACRPTGAAKNSRLVLVALYLVVKDSFGLYVDICEALGVLLDKFTEMEYADCVRGFEAYVSAAKMIDELVGFYGWCKDIGIARSSEFPEVQRITDKLLGTLDGFLKEMANRPKNPERIREEKLPPKQEPEPDMNEVKA****************************TDDLVNLKDDATSADEQGNKLALALFSGPPTNTNGSWEAFPSNGQPEVTSAWQTPAAESGRADWESALVETAGNLSKQKAAYAGGFDSLVLNGMYDQGAVRQH******************PGKSATPVLALPAPDGTVQTVGNNDPFAASLTVPPPSYVQMAEMERKQQFLVQEQQLWQQYGRDGMQGQVALAKIAGGSGYYGPNPQSMMPYGMPQVTGMGQPGPGGYYYSPY

****TIRKAIGAVKDQTSISLAKVAGNIAPDLEVLVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSKTHDWIVAVKALMLVHKLLLDGHLLFEDEIVYSTRRGMRLLNMSDFRDEAHSNSWDHGGFVRFYAMYLDEKVEFVVYEKKM***********************L**QSYGDVSESVRREE***ATPMREMRPERVLARLNQLLRILDKVLACRPTGAAKNSRLVLVALYLVVKDSFGLYVDICEALGVLLDKFTEMEYADCVRGFEAYVSAAKMIDELVGFYGWCKDIGIARSSEFPEVQRITDKLLGTLDGFLKEMA**********************************************************DDLVNLKDDATSADEQGNKLALALFSGPPTN****************************RADWESALVETAGNLSKQKAAYAGGFDSLVLNGMYDQGAVRQHVSTTQLSGGSASSVTL*GPGKSATPVLALPAPDGTVQTVGNNDPFAASLTVPPPSYVQMAEMERKQQFLVQEQQLWQQYGRDGMQGQVALAKIAGGSGYYGPNPQSMMPYGMPQVTGMGQPGPGGYYYSPY

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		628	2.2.26 [Sep-21-2011]
Q8S9J8		635	Probable clathrin assembl	yes	no	0.966	0.955	0.611	0.0
Q8LF20		653	Putative clathrin assembl	no	no	0.969	0.932	0.598	0.0
Q9SA65		599	Putative clathrin assembl	no	no	0.863	0.904	0.420	1e-136
Q8GX47		611	Putative clathrin assembl	no	no	0.928	0.954	0.415	1e-125
Q9ZVN6		653	Clathrin coat assembly pr	no	no	0.519	0.499	0.404	7e-71
P94017		692	Putative clathrin assembl	no	no	0.700	0.635	0.307	4e-54
Q8VYT2		601	Putative clathrin assembl	no	no	0.777	0.811	0.277	2e-53
Q8LBH2		571	Putative clathrin assembl	no	no	0.748	0.823	0.310	2e-53
Q9LHS0		544	Putative clathrin assembl	no	no	0.764	0.882	0.293	3e-50
Q9LVD8		591	Putative clathrin assembl	no	no	0.479	0.509	0.334	8e-48

>sp\|Q8S9J8\|CAP1_ARATH Probable clathrin assembly protein At4g32285 OS=Arabidopsis thaliana GN=At4g32285 PE=1 SV=2	Back alignment and function desciption

 Score =  721 bits (1860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/649 (61%), Positives = 482/649 (74%), Gaps = 42/649 (6%)

Query: 5   TIRKAIGAVKDQTSISLAKVAGNIAPDLEVLVVKATSHDDEPADDKYVREIVSLMSYSRG 64
           ++RKAIG VKDQTSI +AKVA N+APDLEV +VKATSHDD+ + DKY+REI+SL S SRG
Sbjct: 4   SMRKAIGVVKDQTSIGIAKVASNMAPDLEVAIVKATSHDDDQSSDKYIREILSLTSLSRG 63

Query: 65  YVSACIATISKRLSKTHDWIVAVKALMLVHKLLLDGHLLFEDEIVYSTRRGMRLLNMSDF 124
           YV AC+ ++S+RL KT DWIVA+KALMLVH+LL +G  LF++EI+Y+TRRG R+LNMSDF
Sbjct: 64  YVHACVTSVSRRLKKTRDWIVALKALMLVHRLLNEGDPLFQEEILYATRRGTRILNMSDF 123

Query: 125 RDEAHSNSWDHGGFVRFYAMYLDEKVEFVVYEKKMRGGEGKV-------EEREDRFRDDF 177
           RDEAHS+SWDH  FVR YA YLD+++E  ++E++ R G G         ++  +R RDDF
Sbjct: 124 RDEAHSSSWDHSAFVRTYASYLDQRLELALFERRGRNGGGSSSSHQSNGDDGYNRSRDDF 183

Query: 178 DR--------------GMELRSQSYGDVSESVRREERREATPMREMRPERVLARLNQLLR 223
                           GM  RS+S+GDV+E   REE++  TP+REM PER+  ++  L R
Sbjct: 184 RSPPPRTYDYETGNGFGMPKRSRSFGDVNEIGAREEKKSVTPLREMTPERIFGKMGHLQR 243

Query: 224 ILDKVLACRPTGAAKNSRLVLVALYLVVKDSFGLYVDICEALGVLLDKFTEMEYADCVRG 283
           +LD+ L+CRPTG AKNSR++L+A+Y VVK+SF LY DICE L VLLDKF +MEY DCV+ 
Sbjct: 244 LLDRFLSCRPTGLAKNSRMILIAMYPVVKESFRLYADICEVLAVLLDKFFDMEYTDCVKA 303

Query: 284 FEAYVSAAKMIDELVGFYGWCKDIGIARSSEFPEVQRITDKLLGTLDGFLKEMANRPKNP 343
           F+AY SAAK IDEL+ FY WCKD G+ARSSE+PEVQRIT KLL TL+ F+++ A R K+P
Sbjct: 304 FDAYASAAKQIDELIAFYHWCKDTGVARSSEYPEVQRITSKLLETLEEFVRDRAKRAKSP 363

Query: 344 ER---IREEKLPPKQEPEPDMNEVKALPAPENSSPPPPPPPKPQQPPKPQPQQVTDDLVN 400
           ER          P  E   DMNE+KALP PEN +    PPP P   PKPQ  QVTDDLVN
Sbjct: 364 ERKEIEAPPAPAPPVEEPVDMNEIKALPPPENHT----PPPPPAPEPKPQQPQVTDDLVN 419

Query: 401 LKDDATSADEQGNKLALALFSGPPTNTNGSWEAFPSNGQPEVTSAWQTPAAESGRADWES 460
           L++D  S D+QGNK ALALF+GPP N NG WEAF S+    VTSAWQ PAAE G+ADWE 
Sbjct: 420 LREDDVSGDDQGNKFALALFAGPPAN-NGKWEAFSSDNN--VTSAWQNPAAELGKADWEL 476

Query: 461 ALVETAGNLSKQKAAYAGGFDSLVLNGMYDQGAVRQHVSTTQLSGGSASSVTLPGPGKSA 520
           ALVETA NL  QKAA  GG D L+LNGMYDQGAVRQHVST++L+GGS+SSV LP PGK  
Sbjct: 477 ALVETASNLEHQKAAMGGGLDPLLLNGMYDQGAVRQHVSTSELTGGSSSSVALPLPGKVN 536

Query: 521 TPVLALPAPDGTVQTVGNNDPFAASLTVPPPSYVQMAEMERKQQFLVQEQQLWQQYGRDG 580
           + +LALPAPDGTVQ V N DPFAASLT+PPPSYVQMAEM++KQ  L QEQQLWQQY ++G
Sbjct: 537 SHILALPAPDGTVQKV-NQDPFAASLTIPPPSYVQMAEMDKKQYLLTQEQQLWQQYQQEG 595

Query: 581 MQGQVALAKIAGGSGYYGPNPQSMMPYGMPQVTGMGQPGPGGYYY-SPY 628
           M+GQ +LAK+           Q+ MPYGMP V GMG P P GYYY +PY
Sbjct: 596 MRGQASLAKMN--------TAQTAMPYGMPPVNGMG-PSPMGYYYNNPY 635

Arabidopsis thaliana (taxid: 3702)

>sp\|Q8LF20\|CAP2_ARATH Putative clathrin assembly protein At2g25430 OS=Arabidopsis thaliana GN=At2g25430 PE=1 SV=2	Back alignment and function description

>sp\|Q9SA65\|CAP4_ARATH Putative clathrin assembly protein At1g03050 OS=Arabidopsis thaliana GN=At1g03050 PE=2 SV=1	Back alignment and function description

>sp\|Q8GX47\|CAP3_ARATH Putative clathrin assembly protein At4g02650 OS=Arabidopsis thaliana GN=At4g02650 PE=2 SV=2	Back alignment and function description

>sp\|Q9ZVN6\|AP180_ARATH Clathrin coat assembly protein AP180 OS=Arabidopsis thaliana GN=AP180 PE=1 SV=1	Back alignment and function description

>sp\|P94017\|CAP9_ARATH Putative clathrin assembly protein At1g14910 OS=Arabidopsis thaliana GN=At1g14910 PE=2 SV=2	Back alignment and function description

>sp\|Q8VYT2\|CAP6_ARATH Putative clathrin assembly protein At4g25940 OS=Arabidopsis thaliana GN=At4g25940 PE=2 SV=1	Back alignment and function description

>sp\|Q8LBH2\|CAP8_ARATH Putative clathrin assembly protein At2g01600 OS=Arabidopsis thaliana GN=At2g01600 PE=2 SV=2	Back alignment and function description

>sp\|Q9LHS0\|CAP10_ARATH Putative clathrin assembly protein At5g35200 OS=Arabidopsis thaliana GN=At5g35200 PE=1 SV=1	Back alignment and function description

>sp\|Q9LVD8\|CAP7_ARATH Putative clathrin assembly protein At5g57200 OS=Arabidopsis thaliana GN=At5g57200 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		628
356546112		612	PREDICTED: putative clathrin assembly pr	0.964	0.990	0.699	0.0
225445541		633	PREDICTED: probable clathrin assembly pr	0.993	0.985	0.715	0.0
357478179		630	epsin N-terminal homology (ENTH) domain-	0.941	0.938	0.676	0.0
224142597		622	predicted protein [Populus trichocarpa]	0.974	0.983	0.702	0.0
224087112		595	predicted protein [Populus trichocarpa]	0.929	0.981	0.703	0.0
224143157		671	predicted protein [Populus trichocarpa]	0.988	0.925	0.622	0.0
224092494		658	predicted protein [Populus trichocarpa]	0.985	0.940	0.622	0.0
225430302		652	PREDICTED: putative clathrin assembly pr	0.990	0.953	0.655	0.0
356507716		652	PREDICTED: putative clathrin assembly pr	0.980	0.944	0.640	0.0
255548898		662	clathrin assembly protein, putative [Ric	0.987	0.936	0.625	0.0

>gi\|356546112\|ref\|XP_003541475.1\| PREDICTED: putative clathrin assembly protein At2g25430-like [Glycine max]	Back alignment and taxonomy information

 Score =  887 bits (2292), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/633 (69%), Positives = 510/633 (80%), Gaps = 27/633 (4%)

Query: 1   MAPSTIRKAIGAVKDQTSISLAKVAGNIAPDLEVLVVKATSHDDEPADDKYVREIVSLMS 60
           MA STIRKAIG VKDQTSIS+AKVAGN+APDLEVL+VKATSH+  PAD+KYVREI++L S
Sbjct: 1   MASSTIRKAIGVVKDQTSISIAKVAGNLAPDLEVLIVKATSHEQVPADEKYVREILTLTS 60

Query: 61  YSRGYVSACIATISKRLSKTHDWIVAVKALMLVHKLLLDGHLLFEDEIVYSTRRGM-RLL 119
            SR Y++A + TISKRL+KT DWIVA+KAL+LVH+LL+D H  FE+EIV+STR G  R+L
Sbjct: 61  LSRSYINASLVTISKRLNKTRDWIVAIKALLLVHRLLVDAHPAFEEEIVHSTRLGTSRIL 120

Query: 120 NMSDFRDEAHSNSWDHGGFVRFYAMYLDEKVEFVVYEKKMRGGEGKVEEREDRFRDDFDR 179
           NMSDFRD+AHSNSWD  GFVR Y++YLD KV+FV Y +K+ GG   VE  E  FRD+F  
Sbjct: 121 NMSDFRDDAHSNSWDQVGFVRVYSLYLDAKVDFVAYRRKLSGG--VVESVE--FRDEFGS 176

Query: 180 GMELRSQSYGDVSESVRREERREATPMREMRPERVLARLNQLLRILDKVLACRPTGAAKN 239
                              ER E TP+REM  ERVL RLN+LLR+LD+VL CRP+GAAKN
Sbjct: 177 A----------------ERERNEVTPVREMGAERVLKRLNRLLRMLDRVLGCRPSGAAKN 220

Query: 240 SRLVLVALYLVVKDSFGLYVDICEALGVLLDKFTEMEYADCVRGFEAYVSAAKMIDELVG 299
           + LVLVALY VV+DSF LY ++C+ LGVLLD+FTEMEY  CV+ F++YVSAAKM+DELVG
Sbjct: 221 NSLVLVALYQVVRDSFKLYAEVCDVLGVLLDRFTEMEYEHCVKAFDSYVSAAKMMDELVG 280

Query: 300 FYGWCKDIGIARSSEFPEVQRITDKLLGTLDGFLKEMANRPKNPERIREEKLPPKQ-EPE 358
           FYGWCKD GIARSSE+P+VQRITDKLLGTL+GFLKEM+ RPK+PER  E K+   + +PE
Sbjct: 281 FYGWCKDTGIARSSEYPDVQRITDKLLGTLEGFLKEMSCRPKSPERKLEVKVTVNESQPE 340

Query: 359 PDMNEVKALPAPENSSPPPPPPPKPQQPPK--PQPQQVTDDLVNLKDDATSADEQGNKLA 416
            DMN+VKALPAPE  S  PPPP    QP K  P  Q+ T DLV+L++D  SADEQGNKLA
Sbjct: 341 ADMNKVKALPAPETESFTPPPPMSVAQPNKIAPNSQKQTSDLVDLREDGVSADEQGNKLA 400

Query: 417 LALFSGPPT-NTNGSWEAFPSNGQPEVTSAWQTPAAESGRADWESALVETAGNLSKQKAA 475
           LALFSG  T  T GSWEAFPSNG+ EV SAW+TPAAE+G+ADWE ALVE   NLS+QKA 
Sbjct: 401 LALFSGAATVRTEGSWEAFPSNGESEVKSAWETPAAEAGKADWELALVENTSNLSRQKAD 460

Query: 476 YAGGFDSLVLNGMYDQGAVRQHVSTTQLSGGSASSVTLPGPGKSATPVLALPAPDGTVQT 535
            AGGFD L+LNGMYDQGAVRQHVSTTQLSGGSASSV LPGPGKSATPVLALPAPDGTVQ 
Sbjct: 461 LAGGFDPLLLNGMYDQGAVRQHVSTTQLSGGSASSVALPGPGKSATPVLALPAPDGTVQA 520

Query: 536 VGNNDPFAASLTVPPPSYVQMAEMERKQQFLVQEQQLWQQYGRDGMQGQVALAKIAGGSG 595
           VG  DPFAASLTVPPPSYVQ+A+MERKQ  LVQEQQLWQQYGRDGMQGQ+ L+++AG  G
Sbjct: 521 VGPQDPFAASLTVPPPSYVQIADMERKQHLLVQEQQLWQQYGRDGMQGQLGLSRVAGAPG 580

Query: 596 YYGPNPQSMMPYGMPQVTGMGQPGPGGYYYSPY 628
           YY P PQ MMPYGMPQ  G+GQ  PGGYY +PY
Sbjct: 581 YYAPAPQPMMPYGMPQFGGIGQ--PGGYYPAPY 611

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225445541\|ref\|XP_002285283.1\| PREDICTED: probable clathrin assembly protein At4g32285-like isoform 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357478179\|ref\|XP_003609375.1\| epsin N-terminal homology (ENTH) domain-containing protein [Medicago truncatula] gi\|355510430\|gb\|AES91572.1\| epsin N-terminal homology (ENTH) domain-containing protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|224142597\|ref\|XP_002324642.1\| predicted protein [Populus trichocarpa] gi\|222866076\|gb\|EEF03207.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224087112\|ref\|XP_002308069.1\| predicted protein [Populus trichocarpa] gi\|222854045\|gb\|EEE91592.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224143157\|ref\|XP_002324864.1\| predicted protein [Populus trichocarpa] gi\|222866298\|gb\|EEF03429.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224092494\|ref\|XP_002309633.1\| predicted protein [Populus trichocarpa] gi\|222855609\|gb\|EEE93156.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225430302\|ref\|XP_002285168.1\| PREDICTED: putative clathrin assembly protein At2g25430-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356507716\|ref\|XP_003522610.1\| PREDICTED: putative clathrin assembly protein At2g25430-like [Glycine max]	Back alignment and taxonomy information

>gi\|255548898\|ref\|XP_002515505.1\| clathrin assembly protein, putative [Ricinus communis] gi\|223545449\|gb\|EEF46954.1\| clathrin assembly protein, putative [Ricinus communis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		628
TAIR\|locus:2040115		653	AT2G25430 [Arabidopsis thalian	0.664	0.638	0.568	2.8e-174
TAIR\|locus:505006543		635	AT4G32285 [Arabidopsis thalian	0.665	0.658	0.570	4.6e-174
TAIR\|locus:2132382		611	AT4G02650 [Arabidopsis thalian	0.923	0.949	0.405	1.3e-109
TAIR\|locus:2007524		599	AT1G03050 [Arabidopsis thalian	0.894	0.938	0.4	2.4e-108
TAIR\|locus:2205558		653	AT1G05020 [Arabidopsis thalian	0.519	0.499	0.383	9.3e-59
TAIR\|locus:2165615		591	AT5G57200 [Arabidopsis thalian	0.230	0.245	0.390	2e-48
TAIR\|locus:2120780		601	AT4G25940 [Arabidopsis thalian	0.232	0.242	0.36	5.7e-47
TAIR\|locus:2049587		571	AT2G01600 [Arabidopsis thalian	0.227	0.250	0.374	9.4e-42
TAIR\|locus:2182432		544	AT5G35200 [Arabidopsis thalian	0.234	0.270	0.366	6.3e-41
TAIR\|locus:2006727		692	AT1G14910 [Arabidopsis thalian	0.434	0.394	0.284	6.8e-40

TAIR\|locus:2040115 AT2G25430 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1177 (419.4 bits), Expect = 2.8e-174, Sum P(2) = 2.8e-174
 Identities = 248/436 (56%), Positives = 296/436 (67%)

Query:   180 GMELRSQSYGDXXXXXXXXXXXX------ATPMREMRPERVLARLNQLLRILDKVLACRP 233
             G+  RS+SYGD                   TP+REM PER+  ++  L R+LD+ L+ RP
Sbjct:   214 GVPKRSRSYGDMTEMGGGGGGGGRDEKKVVTPLREMTPERIFGKMGHLQRLLDRFLSLRP 273

Query:   234 TGAAKNSRLVLVALYLVVKDSFGLYVDICEALGVLLDKFTEMEYADCVRGFEAYVSAAKM 293
             TG AKNSR++L+ALY VV++SF LY DICE L VLLDKF +MEY+DCV+ F+AY SAAK 
Sbjct:   274 TGLAKNSRMILIALYPVVRESFKLYADICEVLAVLLDKFFDMEYSDCVKAFDAYASAAKQ 333

Query:   294 IDELVGFYGWCKDIGIARSSEFPEVQRITDKLLGTLDGFLKEMANRPKNPERIRXXX--- 350
             IDEL+ FY WCK+ G+ARSSE+PEVQRIT KLL TL+ F+++ A R K+PER        
Sbjct:   334 IDELIAFYNWCKETGVARSSEYPEVQRITSKLLETLEEFVRDRAKRGKSPERKEIEAPPP 393

Query:   351 XXXXXXXXXDMNEVKALPAPENSSXXXXXXXXXXXXXXXXXXXVTDDLVNLKDDATSADE 410
                      DMNE+KALP PEN +                    T+DLVNL++D  +AD+
Sbjct:   394 VVEEEEPEPDMNEIKALPPPENYTPPPPPEPEPQPEKPQF----TEDLVNLREDEVTADD 449

Query:   411 QGNKLALALFSGPPTNTNGSWEAFPSNGQPEVTSAWQTPAAESGRADWESALVETAGNLS 470
             QGNK ALALF+GPP N NG WEAF SNG   VTSAWQ PAAE G+ADWE ALVET  NL 
Sbjct:   450 QGNKFALALFAGPPGN-NGKWEAFSSNG---VTSAWQNPAAEPGKADWELALVETTSNLE 505

Query:   471 KQKAAYAGGFDSLVLNGMYDQGAVRQHVSTTQLSGGSASSVTLPGPGKSATPVLALPAPD 530
             KQ AA  GGFD+L+LNGMYDQG VRQHVST+QL+GGSASSV LP PGK+   VLALPAPD
Sbjct:   506 KQTAALGGGFDNLLLNGMYDQGMVRQHVSTSQLTGGSASSVALPLPGKTNNQVLALPAPD 565

Query:   531 GTVQTVGNNDPFAASLTVPPPSYVQMAEMERKXXXXXXXXXXXXXYGRDGMQGQVALAKI 590
             GTV+ V N DPFAASLT+PPPSYVQMAEME+K             Y RDGM+GQ +LAK+
Sbjct:   566 GTVEKV-NQDPFAASLTIPPPSYVQMAEMEKKQYLLSQEQQLWQQYQRDGMRGQASLAKM 624

Query:   591 -AGGSGYYGPNPQSMM 605
               G    YG  P + M
Sbjct:   625 NTGPVPAYGMPPVNGM 640

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005545 "1-phosphatidylinositol binding" evidence=IEA

GO:0030118 "clathrin coat" evidence=IEA

GO:0030276 "clathrin binding" evidence=IEA

GO:0048268 "clathrin coat assembly" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

TAIR\|locus:505006543 AT4G32285 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2132382 AT4G02650 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2007524 AT1G03050 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2205558 AT1G05020 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2165615 AT5G57200 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2120780 AT4G25940 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2049587 AT2G01600 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2182432 AT5G35200 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2006727 AT1G14910 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8S9J8	CAP1_ARATH	No assigned EC number	0.6117	0.9665	0.9559	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		628
pfam07651		278	pfam07651, ANTH, ANTH domain	5e-83
cd03564		117	cd03564, ANTH_AP180_CALM, ANTH domain family; comp	1e-37
smart00273		127	smart00273, ENTH, Epsin N-terminal homology (ENTH)	1e-36
pfam01417		124	pfam01417, ENTH, ENTH domain	2e-06
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-04
COG0810		244	COG0810, TonB, Periplasmic protein TonB, links inn	1e-04
PRK07764		824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.004

>gnl\|CDD\|219498 pfam07651, ANTH, ANTH domain	Back alignment and domain information

 Score =  261 bits (670), Expect = 5e-83
 Identities = 113/305 (37%), Positives = 162/305 (53%), Gaps = 29/305 (9%)

Query: 31  DLEVLVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSKTHDWIVAVKAL 90
           DLEV VVKATSHD+ P   K+VREI+   S S   V+A    +S+RL  T +W+VA+KAL
Sbjct: 3   DLEVAVVKATSHDEVPPKKKHVREILVGTS-SPAKVAALFWALSRRLPLTRNWVVALKAL 61

Query: 91  MLVHKLLLDGHLLFEDEIVYSTRRGMRLLNMSDFRDEAHSNSWDHGGFVRFYAMYLDEKV 150
           +LVHKLL +GH     E++ + RR   LL +S F D++ S +WD+G F+R YA YLDE++
Sbjct: 62  ILVHKLLREGHPSVLQELLRARRRISSLLRISSF-DDSMSLTWDYGAFIRAYAKYLDERL 120

Query: 151 EFVVYEKKMRGGEGKVEEREDRFRDDFDRGMELRSQSYGDVSESVRREERREATPMREMR 210
           +F  + K                   F+R       S   V +   R           M 
Sbjct: 121 DF--HRKL-------------PRDPTFERVEY---GSLRAVGDPNSR---------YTMS 153

Query: 211 PERVLARLNQLLRILDKVLACRPTGAAKNSRLVLVALYLVVKDSFGLYVDICEALGVLLD 270
            E +L  + +L ++LD +L C+PTG A  +  ++ AL L++K+SFGLY  I E +  LL+
Sbjct: 154 MEDLLDIIPKLQKLLDALLKCKPTGNALTNECIIAALILLIKESFGLYGAINEGIINLLE 213

Query: 271 KFTEMEYADCVRGFEAYVSAAKMIDELVGFYGWCKDIGIARSSEFPEVQRITDKLLGTLD 330
           KF EM   D       Y       + L  FY  CK++G  RS E P++  I   LL  L+
Sbjct: 214 KFFEMSKPDADAALGIYKRFVSQFERLKEFYEVCKNLGYFRSLEIPKLPHIPPNLLDALE 273

Query: 331 GFLKE 335
             L++
Sbjct: 274 EHLRD 278

AP180 is an endocytotic accessory proteins that has been implicated in the formation of clathrin-coated pits. The domain is involved in phosphatidylinositol 4,5-bisphosphate binding and is a universal adaptor for nucleation of clathrin coats. Length = 278

>gnl\|CDD\|239622 cd03564, ANTH_AP180_CALM, ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins	Back alignment and domain information

>gnl\|CDD\|214594 smart00273, ENTH, Epsin N-terminal homology (ENTH) domain	Back alignment and domain information

>gnl\|CDD\|216488 pfam01417, ENTH, ENTH domain	Back alignment and domain information

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

>gnl\|CDD\|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		628
KOG0251		491	consensus Clathrin assembly protein AP180 and rela	100.0
PF07651		280	ANTH: ANTH domain; InterPro: IPR011417 AP180 is an	100.0
KOG0980		980	consensus Actin-binding protein SLA2/Huntingtin-in	100.0
cd03564		117	ANTH_AP180_CALM ANTH domain family; composed of ad	99.98
smart00273		127	ENTH Epsin N-terminal homology (ENTH) domain.	99.95
PF01417		125	ENTH: ENTH domain; InterPro: IPR001026 The ENTH (E	99.37
cd00197		115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	99.21
cd03571		123	ENTH_epsin ENTH domain, Epsin family; The epsin (E	99.0
KOG2056		336	consensus Equilibrative nucleoside transporter pro	98.37
cd03572		122	ENTH_epsin_related ENTH domain, Epsin Related fami	98.16
KOG2057		499	consensus Predicted equilibrative nucleoside trans	96.78
cd03568		144	VHS_STAM VHS domain family, STAM subfamily; member	96.2
cd03569		142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	96.16
cd03567		139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	95.96
PF00790		140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	95.86
cd03565		141	VHS_Tom1 VHS domain family, Tom1 subfamily; The VH	95.85
smart00288		133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	95.64
cd03561		133	VHS VHS domain family; The VHS domain is present i	95.12
KOG2199		462	consensus Signal transducing adaptor protein STAM/	88.98

>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=3.9e-90  Score=754.22  Aligned_cols=475  Identities=38%  Similarity=0.561  Sum_probs=360.4

Q ss_pred             HHHHHhhhcchhhhhhhcCCCChhHHHHHHhhcCCCCCCCChhhHHHHHHHHccCCccHHHHHHHHhhhccCCCChHHHH
Q 045671            8 KAIGAVKDQTSISLAKVAGNIAPDLEVLVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSKTHDWIVAV   87 (628)
Q Consensus         8 ka~GalKDqtsiglAkv~~~~~~dLdvAIvKATshde~PPKeKHVr~IL~~Ts~sr~~v~~~v~aLsrRL~kTrnWiVAl   87 (628)
                      +|+|++||+||||+|+|. +.+++|++||+|||+|+++|||+|||+.||.+|+.+++++.+|+++|++||++||||+||+
T Consensus         1 ~~~gaiKD~~s~~~a~v~-~~~~~l~~AV~KATsh~~~ppk~k~l~~Il~~ts~~~~~i~~~v~aLs~Rl~~TrnW~VAl   79 (491)
T KOG0251|consen    1 RAIGAIKDRTSIGKASVA-SAGSDLEKAVVKATSHDDMPPKDKYLDEILSATSSSPASIPSCVHALSERLNKTRNWTVAL   79 (491)
T ss_pred             CCccccchhhhhHHHHhh-hhhhhHHHHHHhhccCCCCCccHHHHHHHHHHhcCCcccHHHHHHHHHHHhCCCcceeehH
Confidence            579999999999999994 4789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHhcCcccccccccccccCCCCCCcchHHHHHHHHHHHhhh-hHHhhhhccCCCCcc
Q 045671           88 KALMLVHKLLLDGHLLFEDEIVYSTRRGMRLLNMSDFRDEAHSNSWDHGGFVRFYAMYLDEKVE-FVVYEKKMRGGEGKV  166 (628)
Q Consensus        88 KaLIlIHRLLreGdp~f~~El~~~srrg~rilnLs~F~D~s~s~swdysafVR~Ya~YLdeRLe-f~~~~~~~~g~~~~~  166 (628)
                      |+||||||||++|+++|.+|+.++.    ++|+|++|+|++++.+|||++|||+|++||+||++ |++...+        
T Consensus        80 KsLIliH~ll~~G~~~f~~~l~~~~----~~l~lS~F~d~s~~~~~d~safVR~Ya~YLderl~~~~~~~~d--------  147 (491)
T KOG0251|consen   80 KALILIHRLLKEGDPSFEQELLSRN----LILNLSDFRDKSSSLTWDMSAFVRTYALYLDERLECYRVLGFD--------  147 (491)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHhcc----cccchhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHhccc--------
Confidence            9999999999999999999996442    68999999999988999999999999999999999 7777432        


Q ss_pred             ccccccccCcccccccccccccCCcchhhhhhhhccCCCCCCCC-HHHHHHHHHHHHHHHHHHHccccCCCccCchHHHH
Q 045671          167 EEREDRFRDDFDRGMELRSQSYGDVSESVRREERREATPMREMR-PERVLARLNQLLRILDKVLACRPTGAAKNSRLVLV  245 (628)
Q Consensus       167 ~~~~~~~~~~~~~~e~~r~rs~~~~~~~~~~~~~~~~~~~r~l~-~e~LL~~L~~LQ~LLdrll~crp~g~a~~N~lvl~  245 (628)
                       .     +....                    ++ .....+++. ++.+|+++++||.|||++|+|+|++.+++|.+|++
T Consensus       148 -~-----~~~~~--------------------~~-~k~~~~~~~~~~~~l~~i~~LQ~lld~ll~~~p~~~~~~N~lI~~  200 (491)
T KOG0251|consen  148 -I-----EKVKR--------------------GK-EKTKDRSSKSTDKLLKTIPKLQNLLDRLLKCRPTGSALNNGLIIE  200 (491)
T ss_pred             -c-----ccccC--------------------cc-cccccccccchHHHHHHHHHHHHHHHHHHcCCCCchhhcCcHHHH
Confidence             1     11000                    00 112344555 78899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccCCCCCCCChhh
Q 045671          246 ALYLVVKDSFGLYVDICEALGVLLDKFTEMEYADCVRGFEAYVSAAKMIDELVGFYGWCKDIGIARSSEFPEVQRITDKL  325 (628)
Q Consensus       246 AL~llVkDSf~LY~~i~egli~LLd~FFeM~~~Da~kaleIYkRf~kQ~e~L~~FY~~Ck~l~~~r~~eiP~L~~~P~~l  325 (628)
                      ||++||+|||+||+.||+||++|||+||||+++||+++|+||+||.+|+++|.+||++||.+|+.|.++||+|+++|.++
T Consensus       201 A~~lvvkdsf~ly~~i~~gi~~Llekffem~~~~a~~al~iykr~~~q~e~L~~f~~~ck~~g~~r~~~iP~l~~i~~s~  280 (491)
T KOG0251|consen  201 AFELVVKDSFKLYAAINDGIINLLEKFFEMSKHDAIKALDIYKRFLSQTEKLSEFLKVCKSVGVDRGFEIPVLKRIPISL  280 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcchhhcCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhchhhhhhhhcCCCCC-----Cccc--cccCC-C---CCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 045671          326 LGTLDGFLKEMANRPKN-----PERI--REEKL-P---PKQEPEPDMNEVKALPAPENSSPPPPPPPKPQQPPKPQPQQV  394 (628)
Q Consensus       326 L~tLEEyIrd~~~~~~~-----~~~~--~~~~~-~---~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~  394 (628)
                      |++|||||++.......     +...  .+.+. +   +.++.++....+++.+.+.+..+..+.+.++.+...++....
T Consensus       281 l~~lEe~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (491)
T KOG0251|consen  281 LEALEEHLRDVEGGKAKTAKVSPVSQFSTDFESSESSSRLEEPEEQKEVIEELQEPLEQEEDQPSPNSENPEANDQAGIA  360 (491)
T ss_pred             HHHHHHHHhhcccccccccccCCccccccchhccccccccccchhhhhccccccccccccccCCCCCCCCcccccccccc
Confidence            99999999998652211     1110  00000 0   000111110004444433221111111001111111111122


Q ss_pred             c-ccccCCCCCC-CChhhhhcccccccccCCCCCCCCCCCCCCCCCCccccccCCCCCcccCCCccchhhhcccCCchhh
Q 045671          395 T-DDLVNLKDDA-TSADEQGNKLALALFSGPPTNTNGSWEAFPSNGQPEVTSAWQTPAAESGRADWESALVETAGNLSKQ  472 (628)
Q Consensus       395 ~-~dll~l~~~~-~~~~e~~~~lalAl~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~WElaLV~~~s~~~~~  472 (628)
                      + +||+.+++.. .++.+..|.||||+  +.+        .+       ..++|+.++...+.++|++   .+ +    +
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~--------~~-------~~~~~~~~~~~~~~~~~~~---~~-~----~  415 (491)
T KOG0251|consen  361 TDDLLLQPDNLPMFSASTAPNALALAL--PFP--------NH-------TGSGWGLPAATPDSAAWET---AT-M----Q  415 (491)
T ss_pred             CcchhhcccCCCccccccCcchhhcCC--CCC--------CC-------CCCccccccCCcchhhhhh---cc-c----c
Confidence            2 4555555433 56678888888888  222        11       1244555555556666666   11 1    2


Q ss_pred             hhhccCCcchhhhhhhchhHHHHhhhcccccCCCCccccccCCCCCCCCcccccCCCCCccccCCCCCcccccCCCCCCh
Q 045671          473 KAAYAGGFDSLVLNGMYDQGAVRQHVSTTQLSGGSASSVTLPGPGKSATPVLALPAPDGTVQTVGNNDPFAASLTVPPPS  552 (628)
Q Consensus       473 ~~~l~GG~d~llLd~mY~~~~~~~~~~~~~~~~gs~ssva~~~~~~~~~~~~alpap~g~~~~~~~~dPFaaS~~v~pp~  552 (628)
                        ++||||   +||||| ++.++++++.++.++|++++++.|.     .+++++++|          +||+.|..+++| 
T Consensus       416 --~~~g~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~-----~~~~~~~~~----------~~~~~~~~~a~~-  473 (491)
T KOG0251|consen  416 --ALAGGL---TLNSMV-NNPFRATVQTAPQGQGSQPFGAQPM-----PAMAALPQP----------YPVGQPPFPAQL-  473 (491)
T ss_pred             --cccccc---eecccc-CCchhhhccccccccCCCccccCCc-----hhhhccccc----------CCCCCCCCcCcc-
Confidence              899999   999999 8888887665555678899998774     345555544          555555555555 


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH
Q 045671          553 YVQMAEMERKQQFLVQEQQLWQQ  575 (628)
Q Consensus       553 ~vQma~m~~~q~ll~~eq~~wqq  575 (628)
                           + ..+|.++.|||+||||
T Consensus       474 -----~-~~~~~~~~~~q~~~~~  490 (491)
T KOG0251|consen  474 -----E-MAAQNAAQQQQQQAQQ  490 (491)
T ss_pred             -----h-hhhhhhcccccccccC
Confidence                 3 4456677888999987

>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits	Back alignment and domain information

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]	Back alignment and domain information

>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins	Back alignment and domain information

>smart00273 ENTH Epsin N-terminal homology (ENTH) domain	Back alignment and domain information

>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins	Back alignment and domain information

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain	Back alignment and domain information

>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis	Back alignment and domain information

>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]	Back alignment and domain information

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain	Back alignment and domain information

>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]	Back alignment and domain information

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)	Back alignment and domain information

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)	Back alignment and domain information

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins	Back alignment and domain information

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM	Back alignment and domain information

>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein	Back alignment and domain information

>smart00288 VHS Domain present in VPS-27, Hrs and STAM	Back alignment and domain information

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)	Back alignment and domain information

>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		628
3zyk_A		296	Structure Of Calm (Picalm) Anth Domain Length = 296		2e-06
1hf8_A		289	Calm-N N-Terminal Domain Of Clathrin Assembly Lymph		3e-06
3zym_A		310	Structure Of Calm (Picalm) In Complex With Vamp8 Le		2e-05
3zyl_A		271	Structure Of A Truncated Calm (Picalm) Anth Domain		4e-05

>pdb|3ZYK|A Chain A, Structure Of Calm (Picalm) Anth Domain Length = 296

Back alignment and structure

Iteration: 1

Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 62/307 (20%), Positives = 115/307 (37%), Gaps = 53/307 (17%) Query: 36 VVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSKTHDWIVAVKAXXXXXX 95 V KAT+H+ K++ ++ + + ++ +R + + W+V K+ Sbjct: 33 VCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNS-SWVVVFKSLITTHH 91 Query: 96 XXXXXXXXFEDEIVYSTRRGMRLLNMSDFRDEAHSNSWDHGGFVRFYAMYLDEK------ 149 F I Y R L N+S+F D++ +D F+R Y+ YL+EK Sbjct: 92 LMVYGNERF---IQYLASRNT-LFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQ 147 Query: 150 VEFVVYEKKMRGGEGKVXXXXXXXXXXXXXGMELRSQSYGDXXXXXXXXXXXXATPMREM 209 V F + K RG +G MR M Sbjct: 148 VAFD-FTKVKRGADG----------------------------------------VMRTM 166 Query: 210 RPERVLARLNQLLRILDKVLACRPTGAAKNSRLVLVALYLVVKDSFGLYVDICEALGVLL 269 E++L + + +D +L + ++ A L+ KD+ L+ E + LL Sbjct: 167 NTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLL 226 Query: 270 DKFTEMEYADCVRGFEAYVSAAKMIDELVGFYGWCKDIGIARSSEFPEVQRITDKLLGTL 329 +K+ +M+ C G + Y + + F + +GI R + P++ + LL L Sbjct: 227 EKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDR-GDIPDLSQAPSSLLDAL 285 Query: 330 DGFLKEM 336 + L + Sbjct: 286 EQHLASL 292

PyMOL of 3zyk

>pdb|1HF8|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid Myeloid Leukaemia Protein Length = 289

Back alignment and structure

>pdb|3ZYM|A Chain A, Structure Of Calm (Picalm) In Complex With Vamp8 Length = 310

Back alignment and structure

>pdb|3ZYL|A Chain A, Structure Of A Truncated Calm (Picalm) Anth Domain Length = 271

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		628
3zyl_A		271	Phosphatidylinositol-binding clathrin assembly PR;	7e-77
3zym_A		310	Phosphatidylinositol-binding clathrin assembly PR	1e-73
1hx8_A		299	Synapse-enriched clathrin adaptor protein LAP; all	3e-69
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1inz_A		148	EPS15-interacting portein(epsin); alpha-helix, rik	1e-08
1eyh_A		144	Epsin; superhelix of helices, cell cycle; 1.56A {R	1e-06
1xgw_A		176	Epsin 4; ENTH, enthoprotin, clathrin-associated, e	1e-06
1vdy_A		140	Hypothetical protein (RAFL09-17-B18); structural g	6e-06
3onk_A		150	Epsin-3, ENT3; helix, protein transport; 2.09A {Sa	3e-05
2grx_C		229	Protein TONB; beta barrel, outer membrane, heteroc	1e-04
2grx_C		229	Protein TONB; beta barrel, outer membrane, heteroc	6e-04

>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A* Length = 271	Back alignment and structure

 Score =  245 bits (625), Expect = 7e-77
 Identities = 60/310 (19%), Positives = 124/310 (40%), Gaps = 43/310 (13%)

Query: 2   APSTIRKAIGAVKDQTSISLAKVAGNIAPDLEVLVVKATSHDDEPADDKYVREIVSLMSY 61
           +P  I  +  ++ D+ + +   V G+    +   V KAT+H+      K++  ++   + 
Sbjct: 2   SPIGIHMSGQSLTDRITAAQHSVTGS---AVSKTVCKATTHEIMGPKKKHLDYLIQCTNE 58

Query: 62  SRGYVSACIATISKRLSKTHDWIVAVKALMLVHKLLLDGHLLFEDEIVYSTRRGMRLLNM 121
               +     ++ +R + +  W+V  K+L+  H L++ G+  F   +         L N+
Sbjct: 59  MNVNIPQLADSLFERTTNS-SWVVVFKSLITTHHLMVYGNERFIQYL----ASRNTLFNL 113

Query: 122 SDFRDEAHSNSWDHGGFVRFYAMYLDEKVEFVVYEKKMRGGEGKVEEREDRFRDDFDRGM 181
           S+F D++    +D   F+R Y+ YL+E                                 
Sbjct: 114 SNFLDKSGLQGYDMSTFIRRYSRYLNE--------------------------------- 140

Query: 182 ELRSQSYGDVSESVRREERREATPMREMRPERVLARLNQLLRILDKVLACRPTGAAKNSR 241
             ++ SY  V+    + +R     MR M  E++L  +  +   +D +L          + 
Sbjct: 141 --KAVSYRQVAFDFTKVKRGADGVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNG 198

Query: 242 LVLVALYLVVKDSFGLYVDICEALGVLLDKFTEMEYADCVRGFEAYVSAAKMIDELVGFY 301
           ++  A  L+ KD+  L+    E +  LL+K+ +M+   C  G + Y      +  +  F 
Sbjct: 199 VINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFL 258

Query: 302 GWCKDIGIAR 311
              + +GI R
Sbjct: 259 KVAEQVGIDR 268

PyMOL of 3zyl

>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus} Length = 310	Back alignment and structure

>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3 Length = 299	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1 Length = 148	Back alignment and structure

>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A Length = 144	Back alignment and structure

>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E Length = 176	Back alignment and structure

>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A Length = 140	Back alignment and structure

>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A Length = 150	Back alignment and structure

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229	Back alignment and structure

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		628
1hx8_A		299	Synapse-enriched clathrin adaptor protein LAP; all	100.0
3zym_A		310	Phosphatidylinositol-binding clathrin assembly PR	100.0
3zyl_A		271	Phosphatidylinositol-binding clathrin assembly PR;	100.0
1eyh_A		144	Epsin; superhelix of helices, cell cycle; 1.56A {R	99.44
1inz_A		148	EPS15-interacting portein(epsin); alpha-helix, rik	99.42
3onk_A		150	Epsin-3, ENT3; helix, protein transport; 2.09A {Sa	99.08
1xgw_A		176	Epsin 4; ENTH, enthoprotin, clathrin-associated, e	99.08
1vdy_A		140	Hypothetical protein (RAFL09-17-B18); structural g	98.39
1elk_A		157	Target of MYB1; superhelix of helices, endocytosis	96.29
3ldz_A		140	STAM-1, signal transducing adapter molecule 1; ubi	96.17
1x5b_A		163	Signal transducing adaptor molecule 2; VHS domain,	96.02
3g2s_A		149	C-terminal fragment of sortilin-related receptor;	96.01
3rru_A		152	TOM1L1 protein; structural genomics, PSI-biology,	96.01
1juq_A		171	ADP-ribosylation factor binding protein GGA3; prot	95.91
1mhq_A		148	ADP-ribosylation factor binding protein GGA2; supe	95.88
3zyq_A		226	Hepatocyte growth factor-regulated tyrosine kinas	95.75
1dvp_A		220	HRS, hepatocyte growth factor-regulated tyrosine k	95.27

>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3	Back alignment and structure

Probab=100.00  E-value=4.1e-74  Score=598.45  Aligned_cols=283  Identities=22%  Similarity=0.329  Sum_probs=240.8

Q ss_pred             CChhHHHHHHHHhh-hcchhhhhhhcCCCChhHHHHHHhhcCCCCCCCChhhHHHHHHHHccCCccHHHHHHHHhhhccC
Q 045671            1 MAPSTIRKAIGAVK-DQTSISLAKVAGNIAPDLEVLVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSK   79 (628)
Q Consensus         1 m~~~~~Rka~GalK-DqtsiglAkv~~~~~~dLdvAIvKATshde~PPKeKHVr~IL~~Ts~sr~~v~~~v~aLsrRL~k   79 (628)
                      |++++||+++||+| |+|+++           +++||+|||+|+++|||+||||+||.+|+.+++++++|+++|.+|+ +
T Consensus         3 ~~~~~~~~~~~a~k~~~~~~~-----------l~kaV~KAT~~~~~ppk~Khv~~ii~~t~~~~~~~~~~~~~L~~R~-~   70 (299)
T 1hx8_A            3 MAGQTINDRLLAARHSLAGQG-----------LAKSVCKATTEECIGPKKKHLDYLVHCANEPNVSIPHLANLLIERS-Q   70 (299)
T ss_dssp             -------------------CH-----------HHHHHHHHSCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHH-T
T ss_pred             CchHHHHHHHHHHhhccchhH-----------HHHHHHhccCCCCCCCCHHHHHHHHHHHcCCCCCHHHHHHHHHhhc-c
Confidence            78899999999999 988854           6679999999999999999999999999999999999999999995 7


Q ss_pred             CCChHHHHHHHHHHHHHHhcCCchHHHHHHHHHhcCcccccccccccccC-----------CCCCCcchHHHHHHHHHHH
Q 045671           80 THDWIVAVKALMLVHKLLLDGHLLFEDEIVYSTRRGMRLLNMSDFRDEAH-----------SNSWDHGGFVRFYAMYLDE  148 (628)
Q Consensus        80 TrnWiVAlKaLIlIHRLLreGdp~f~~El~~~srrg~rilnLs~F~D~s~-----------s~swdysafVR~Ya~YLde  148 (628)
                      |+||+||||+|||||||||||||.|++++.  ++  +++|+|++|+|.++           +.+||||.|||+|++||++
T Consensus        71 ~~~w~va~K~LivlH~llreG~~~~~~~l~--~~--~~~l~l~~f~D~~~~~~~~~~~~~~~~~~d~s~~Ir~Ya~yL~~  146 (299)
T 1hx8_A           71 NANWVVVYKSLITTHHLMAYGNERFMQYLA--SS--NSTFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRYAKYLNE  146 (299)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHSCHHHHHHHH--HT--TCCCCCTTCCCCCC---CCSSCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHhcCCHHHHHHHH--hC--CcccchhhhhcccccccccccccccccccchhHHHHHHHHHHHH
Confidence            999999999999999999999999999983  22  47999999999864           3578999999999999999


Q ss_pred             hhh-hHHhhhhccCCCCccccccccccCcccccccccccccCCcchhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHH
Q 045671          149 KVE-FVVYEKKMRGGEGKVEEREDRFRDDFDRGMELRSQSYGDVSESVRREERREATPMREMRPERVLARLNQLLRILDK  227 (628)
Q Consensus       149 RLe-f~~~~~~~~g~~~~~~~~~~~~~~~~~~~e~~r~rs~~~~~~~~~~~~~~~~~~~r~l~~e~LL~~L~~LQ~LLdr  227 (628)
                      |+. ||.++.+       |       ...+                     ...+.+++++|++++||++++.||+|||+
T Consensus       147 r~~~f~~~~~d-------~-------~~~~---------------------~~~~~~~~~~l~~~~lL~~l~~lQ~li~~  191 (299)
T 1hx8_A          147 KSLSYRAMAFD-------F-------CKVK---------------------RGKEEGSLRSMNAEKLLKTLPVLQAQLDA  191 (299)
T ss_dssp             HHHHHHHHSSC-------G-------GGC--------------------------CCCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCC-------c-------cccc---------------------cCccccchhhCCHHHHHHHHHHHHHHHHH
Confidence            965 9998532       2       1100                     01134678999999999999999999999


Q ss_pred             HHccccCCCccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045671          228 VLACRPTGAAKNSRLVLVALYLVVKDSFGLYVDICEALGVLLDKFTEMEYADCVRGFEAYVSAAKMIDELVGFYGWCKDI  307 (628)
Q Consensus       228 ll~crp~g~a~~N~lvl~AL~llVkDSf~LY~~i~egli~LLd~FFeM~~~Da~kaleIYkRf~kQ~e~L~~FY~~Ck~l  307 (628)
                      +++|++.+.+.+|+|+++||++||+|||+||+++|+||++|||+||||++.||++||+||+||.+|+++|++||++||++
T Consensus       192 ll~~~~~~~~~~n~~~~~Al~llv~Ds~~lY~~i~~gi~~lLe~~fem~~~d~~~al~iykrf~~q~~~L~~Fy~~c~~~  271 (299)
T 1hx8_A          192 LLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYNDGIINLLEKYFDMNKKHARDALDLYKKFLVRMDRVGEFLKVAENV  271 (299)
T ss_dssp             HHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccCCCCCCCChhhhhchhhhhhh
Q 045671          308 GIARSSEFPEVQRITDKLLGTLDGFLKE  335 (628)
Q Consensus       308 ~~~r~~eiP~L~~~P~~lL~tLEEyIrd  335 (628)
                      +|++ ++||+|+++|++||++|||||++
T Consensus       272 ~~~~-~~iP~L~~~p~~ll~~Lee~l~~  298 (299)
T 1hx8_A          272 GIDK-GDIPDLTKAPSSLLDALEQHLAT  298 (299)
T ss_dssp             TCCG-GGSCCCCCCCHHHHHHHHHHHHT
T ss_pred             CcCC-CCCCCCCCCCHHHHHHHHHHHhh
Confidence            9977 89999999999999999999986

PyMOL of 1hx8

>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}	Back alignment and structure

>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*	Back alignment and structure

>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A	Back alignment and structure

>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1	Back alignment and structure

>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A	Back alignment and structure

>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E	Back alignment and structure

>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A	Back alignment and structure

>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2	Back alignment and structure

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0	Back alignment and structure

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B	Back alignment and structure

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*	Back alignment and structure

>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}	Back alignment and structure

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*	Back alignment and structure

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2	Back alignment and structure

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*	Back alignment and structure

>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		628
d1hx8a1		133	a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosop	2e-47
d1hf8a1		132	a.7.8.2 (A:150-281) Clathrin assembly lymphoid mye	1e-46
d1hf8a2		131	a.118.9.3 (A:19-149) Clathrin assembly lymphoid my	2e-33
d1hx8a2		140	a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Droso	2e-32
d1eyha_		144	a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [T	1e-23

>d1hx8a1 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 133	Back information, alignment and structure


class: All alpha proteins
fold: Spectrin repeat-like
superfamily: GAT-like domain
family: Phosphoinositide-binding clathrin adaptor, domain 2
domain: AP180 (Lap)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  161 bits (408), Expect = 2e-47
 Identities = 26/131 (19%), Positives = 57/131 (43%), Gaps = 1/131 (0%)

Query: 206 MREMRPERVLARLNQLLRILDKVLACRPTGAAKNSRLVLVALYLVVKDSFGLYVDICEAL 265
           +R M  E++L  L  L   LD +L         ++ ++ ++  L+ +D   L+    + +
Sbjct: 4   LRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYNDGI 63

Query: 266 GVLLDKFTEMEYADCVRGFEAYVSAAKMIDELVGFYGWCKDIGIARSSEFPEVQRITDKL 325
             LL+K+ +M         + Y      +D +  F    +++GI +  + P++ +    L
Sbjct: 64  INLLEKYFDMNKKHARDALDLYKKFLVRMDRVGEFLKVAENVGIDK-GDIPDLTKAPSSL 122

Query: 326 LGTLDGFLKEM 336
           L  L+  L  +
Sbjct: 123 LDALEQHLATL 133

PyMOL of d1hx8a1

>d1hf8a1 a.7.8.2 (A:150-281) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132	Back information, alignment and structure

>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131	Back information, alignment and structure

>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 140	Back information, alignment and structure

>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 144	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		628
d1hx8a1		133	AP180 (Lap) {Fruit fly (Drosophila melanogaster) [	100.0
d1hf8a1		132	Clathrin assembly lymphoid myeloid leukaemia prote	100.0
d1hx8a2		140	AP180 (Lap) {Fruit fly (Drosophila melanogaster) [	99.97
d1hf8a2		131	Clathrin assembly lymphoid myeloid leukaemia prote	99.97
d1eyha_		144	Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.83
d1dvpa1		145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	96.41
d1elka_		153	Tom1 protein {Human (Homo sapiens) [TaxId: 9606]}	96.08
d1ujka_		145	ADP-ribosylation factor binding protein Gga1 {Huma	96.04
d1juqa_		151	ADP-ribosylation factor binding protein Gga3 {Huma	95.38
d1mhqa_		143	ADP-ribosylation factor binding protein Gga2 {Huma	94.87

>d1hx8a1 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: GAT-like domain
family: Phosphoinositide-binding clathrin adaptor, domain 2
domain: AP180 (Lap)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=1.5e-39  Score=299.29  Aligned_cols=130  Identities=20%  Similarity=0.371  Sum_probs=127.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccCCCccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHH
Q 045671          205 PMREMRPERVLARLNQLLRILDKVLACRPTGAAKNSRLVLVALYLVVKDSFGLYVDICEALGVLLDKFTEMEYADCVRGF  284 (628)
Q Consensus       205 ~~r~l~~e~LL~~L~~LQ~LLdrll~crp~g~a~~N~lvl~AL~llVkDSf~LY~~i~egli~LLd~FFeM~~~Da~kal  284 (628)
                      .+|+|++++||+++++||+||||+++|+|++.+.+|.|+++||++||+|||+||+.||+|||||||+||||+++||++||
T Consensus         3 ~lr~m~~~~LL~~l~~lQ~lld~Ll~c~p~~~~~~n~vi~~A~~llvkds~~lY~~inegiinLLd~fFem~k~da~~al   82 (133)
T d1hx8a1           3 SLRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYNDGIINLLEKYFDMNKKHARDAL   82 (133)
T ss_dssp             CTTTCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHH
T ss_pred             hhhcCCHHHHHHHHHHHHHHHHHHHcCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCccccccCCCCCCCChhhhhchhhhhhh
Q 045671          285 EAYVSAAKMIDELVGFYGWCKDIGIARSSEFPEVQRITDKLLGTLDGFLKE  335 (628)
Q Consensus       285 eIYkRf~kQ~e~L~~FY~~Ck~l~~~r~~eiP~L~~~P~~lL~tLEEyIrd  335 (628)
                      +||+||.+|+++|.+||+|||++|++| .+||+|+++|+++|++|||||++
T Consensus        83 ~iyk~~~~q~e~L~~f~~~ck~~g~~r-~e~P~l~~~p~sll~~LEe~l~~  132 (133)
T d1hx8a1          83 DLYKKFLVRMDRVGEFLKVAENVGIDK-GDIPDLTKAPSSLLDALEQHLAT  132 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCG-GGSCCCCCCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCccc-cCCCCCCCCCHHHHHHHHHHHHh
Confidence            999999999999999999999999988 69999999999999999999986

PyMOL of d1hx8a1

>d1hf8a1 a.7.8.2 (A:150-281) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure